BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045814
         (427 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/429 (60%), Positives = 320/429 (74%), Gaps = 22/429 (5%)

Query: 20  QNPNTQLRNLSIETKES-------------QQLYTEIAKQVCKITRTKPRWEQTLLSDIP 66
           QNPN+++RNL + +                QQ   EI K+V  ITRT+PRWEQTLLSD P
Sbjct: 61  QNPNSRIRNLGVVSGNQYGDVEGAHQHTQQQQHLEEIVKRVSDITRTRPRWEQTLLSDFP 120

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SFNF DP F   F++ Q N L+S+RFF WL S  GFSPD  SCNVLFD+LVEA A   A 
Sbjct: 121 SFNFLDPTFLSHFVEHQKNALISLRFFHWLSSQSGFSPDSSSCNVLFDALVEAGACNAAK 180

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
            FLDST F+P P SLE YI+CLC+ GL+EEA   F +LK +GV  SI TWNS L G ++ 
Sbjct: 181 SFLDSTNFNPKPASLEAYIRCLCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRA 240

Query: 187 DRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            R D VW+LY +++ES         GYL+QAFC++ ++S+G+ LLR+VLEDG+VP N AF
Sbjct: 241 GRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNAAF 300

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           NKLIS FC+ K +GRVS+LLH+M+ARNRAPD FTY+EV+NGLCK  K  E +RVF DLK+
Sbjct: 301 NKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKD 360

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RGY PD VMYTT+IHGLC+M WLGDARK+WFEMI KG LPNEYTYN+MIHGY +I NLEE
Sbjct: 361 RGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEE 420

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A ++++EM DKGYGE TV+YN +I GLC HG+  EA+ LFEEM+ KGI R+ ITYN L++
Sbjct: 421 AWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVR 480

Query: 418 GYCKEGKIV 426
           G+CKEGKIV
Sbjct: 481 GFCKEGKIV 489



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 9/288 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           +Q  C+   I +      ++ E GV      +N  + G  K      V  L H +I    
Sbjct: 269 VQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNR 328

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    ++   C  GK  EG+ + + + + G  P+   +  +I   C  K  G   +
Sbjct: 329 APDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARK 388

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+ +   P+ +TY  +I+G  K     EA++++ ++ ++GY   TV Y  +I GLC
Sbjct: 389 LWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLC 448

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G + +A  ++ EM HKG+L N  TYN+++ G+C+   + E   L  E+LD+G   +  
Sbjct: 449 SHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAA 508

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +Y  LI  LC  G    A  L+++M  +G+   V T++ +I G+CK+G
Sbjct: 509 SYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQG 556



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 139/296 (46%), Gaps = 14/296 (4%)

Query: 103 SPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           +PD+ +   + + L +       F+V  D  D  G++P+       I  LC    + +A 
Sbjct: 329 APDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDR-GYAPDRVMYTTMIHGLCRMKWLGDAR 387

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             + ++ + G   +  T+N+ + G  KI   +  WK+Y ++ + GY         +I+  
Sbjct: 388 KLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGL 447

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ GK+ E ++L  ++   G++  +  +N L+  FC++      + LL+ ++ +   P  
Sbjct: 448 CSHGKIKEAHDLFEEMSHKGILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSA 507

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +I+ LC+      A  +++D++ RG  P    +  +I G CK G   +  +    
Sbjct: 508 ASYAPLIDKLCQEGDMQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTT 567

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           M+   L P + ++ S+I    +ID L++A  +   ML  G+  +    N+L+  LC
Sbjct: 568 MLRSKLRPQKKSFESLIQCLSQIDRLDDALLVLDSMLKIGFRLSISICNSLVTKLC 623



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 147/344 (42%), Gaps = 17/344 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P   + N L     + +A+    D L S      +P+  + +  +  LC+ G   E 
Sbjct: 292 GVVPRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEG 351

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  F  LK+ G       + + + G  ++       KL+ ++I+ G+L         I  
Sbjct: 352 FRVFKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHG 411

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + E +++ R++ + G   +  ++N +I   C         +L   M  +    +
Sbjct: 412 YFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRN 471

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  ++ G CK  K +E   +  +L ++G  P    Y  +I  LC+ G + +A+ +W 
Sbjct: 472 HITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAKILWD 531

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M ++G+ P   T++ MI G+C+     E       ML         ++ +LI  L    
Sbjct: 532 DMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFESLIQCLSQID 591

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG-----KIVN 427
           R D+A  + + M + G    +   N+L+   C++      KIVN
Sbjct: 592 RLDDALLVLDSMLKIGFRLSISICNSLVTKLCEKNSLPILKIVN 635


>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 638

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/449 (57%), Positives = 319/449 (71%), Gaps = 29/449 (6%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIET----------KESQQL--------YTEIAKQVC 48
           S++  +RQN R  +N    +RNLS+ET          + S++L         +EIA +V 
Sbjct: 42  SLMISIRQNSRFVKNLRIHIRNLSVETNGGNNGREEIESSEKLLNLTQRKDVSEIAAEVG 101

Query: 49  KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVS 108
           K+ R+KPRWEQ+LLSD PSFNF+DP FF E LKQ NNV LS+RFF WL S   F P  VS
Sbjct: 102 KVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFLPHPVS 161

Query: 109 CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           CN LFD+L+EA+A   A  FL S  FSP P SLE YI+C+CE GL+EEA   F  LKE G
Sbjct: 162 CNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAG 221

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSE 217
               ++TWN A   C+K  RTDL+WKLY  ++E+G           YLIQAFCND KVS 
Sbjct: 222 YRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSR 281

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            YE+LRQ LEDGL P N AFNKLIS FC++KN  RV EL+HTM+ +NR PD FTY+E+IN
Sbjct: 282 AYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIIN 341

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK+   L+A+ VFN LK+RGY PD VMYTT+IHG CKMG L DA K+WFEMI KG LP
Sbjct: 342 GFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLP 401

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NEY+YN++I+G+C+I NL+EA +L+K+MLD GY ETT++ NTLI GLCLHGRTDEAY  F
Sbjct: 402 NEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFF 461

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            EM  K I  DVITYNTLIQG+C+EGK++
Sbjct: 462 REMPCKNIVCDVITYNTLIQGFCREGKVL 490



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    LI  FC  G++ +  +L  ++++ G +P   ++N LI  FC+  N     +L 
Sbjct: 367 DMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLY 426

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+         +   +I GLC   +  EAY  F ++  +  V D + Y T+I G C+ 
Sbjct: 427 KKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCRE 486

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +  +  +  E+  KGL P+  +Y  +I   C++ +++EAK +  +M ++G      T 
Sbjct: 487 GKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTR 546

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + +I+GLC  G   E       M +  +     T+  LIQ   + GK
Sbjct: 547 DHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQIGK 593



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 14/199 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF P+  S N L     +      A K+    LDS G+     S    I  LC  G  +E
Sbjct: 398 GFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDS-GYKETTLSCNTLILGLCLHGRTDE 456

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIES-----GYLIQ 207
           A+  F ++    +   + T+N+ + G  +    +  TDL+ +L    ++       +LIQ
Sbjct: 457 AYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQ 516

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G V E  E+   +   GL P     + +IS  CE+       E L TM+  N  P
Sbjct: 517 KLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKP 576

Query: 268 DNFTYEEVINGLCKSRKRL 286
              T+ ++I  L +  K L
Sbjct: 577 QKETFYKLIQSLIQIGKEL 595


>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Cucumis sativus]
          Length = 602

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/449 (57%), Positives = 319/449 (71%), Gaps = 29/449 (6%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIET----------KESQQL--------YTEIAKQVC 48
           S++  +RQN R  +N    +RNLS+ET          + S++L         +EIA +V 
Sbjct: 6   SLMISIRQNSRFVKNLRIHIRNLSVETNGGNNGREEIESSEKLLNLTQRKDVSEIAAEVG 65

Query: 49  KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVS 108
           K+ R+KPRWEQ+LLSD PSFNF+DP FF E LKQ NNV LS+RFF WL S   F P  VS
Sbjct: 66  KVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFLPHPVS 125

Query: 109 CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           CN LFD+L+EA+A   A  FL S  FSP P SLE YI+C+CE GL+EEA   F  LKE G
Sbjct: 126 CNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAG 185

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSE 217
               ++TWN A   C+K  RTDL+WKLY  ++E+G           YLIQAFCND KVS 
Sbjct: 186 YRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSR 245

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            YE+LRQ LEDGL P N AFNKLIS FC++KN  RV EL+HTM+ +NR PD FTY+E+IN
Sbjct: 246 AYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIIN 305

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK+   L+A+ VFN LK+RGY PD VMYTT+IHG CKMG L DA K+WFEMI KG LP
Sbjct: 306 GFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLP 365

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NEY+YN++I+G+C+I NL+EA +L+K+MLD GY ETT++ NTLI GLCLHGRTDEAY  F
Sbjct: 366 NEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFF 425

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            EM  K I  DVITYNTLIQG+C+EGK++
Sbjct: 426 REMPCKNIVCDVITYNTLIQGFCREGKVL 454



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 108/227 (47%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    LI  FC  G++ +  +L  ++++ G +P   ++N LI  FC+  N     +L 
Sbjct: 331 DMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLPNEYSYNTLIYGFCKIGNLDEAMKLY 390

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+         +   +I GLC   +  EAY  F ++  +  V D + Y T+I G C+ 
Sbjct: 391 KKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFFREMPCKNIVCDVITYNTLIQGFCRE 450

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +  +  +  E+  KGL P+  +Y  +I   C++ +++EAK +  +M ++G      T 
Sbjct: 451 GKVLQSTDLLKELQAKGLQPSTSSYAHLIQKLCQLGSVQEAKEMWNDMHNRGLQPMVCTR 510

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + +I+GLC  G   E       M +  +     T+  LIQ   + GK
Sbjct: 511 DHIISGLCEQGYVVEGMEWLITMLKSNLKPQKETFYKLIQSLIQIGK 557



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/199 (26%), Positives = 83/199 (41%), Gaps = 14/199 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF P+  S N L     +      A K+    LDS G+     S    I  LC  G  +E
Sbjct: 362 GFLPNEYSYNTLIYGFCKIGNLDEAMKLYKKMLDS-GYKETTLSCNTLILGLCLHGRTDE 420

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIES-----GYLIQ 207
           A+  F ++    +   + T+N+ + G  +    +  TDL+ +L    ++       +LIQ
Sbjct: 421 AYDFFREMPCKNIVCDVITYNTLIQGFCREGKVLQSTDLLKELQAKGLQPSTSSYAHLIQ 480

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G V E  E+   +   GL P     + +IS  CE+       E L TM+  N  P
Sbjct: 481 KLCQLGSVQEAKEMWNDMHNRGLQPMVCTRDHIISGLCEQGYVVEGMEWLITMLKSNLKP 540

Query: 268 DNFTYEEVINGLCKSRKRL 286
              T+ ++I  L +  K L
Sbjct: 541 QKETFYKLIQSLIQIGKEL 559


>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]
          Length = 719

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/456 (51%), Positives = 317/456 (69%), Gaps = 33/456 (7%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKE--------------------SQQLY 40
           M RA   V +  R   R  +NPN QLRNLS++ K+                    S++ Y
Sbjct: 1   MIRASSYVNSFFRHRAR--RNPNAQLRNLSVDGKDGVSEAEGSGSIGGERVSQDISRRNY 58

Query: 41  TEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHY 100
           TE+AK V  ITR KPRWEQTL+SD PSFNF DPLFFRE +  QNNVLLS+RFFQWL +++
Sbjct: 59  TEMAKIVATITREKPRWEQTLVSDFPSFNFADPLFFRELVATQNNVLLSLRFFQWLCTNH 118

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
             +PD +S N+LF++L++A+A + A    D  GF P+  SLE Y++CLC  G IEEA   
Sbjct: 119 DCTPDPISSNMLFEALLDAKAVRAAKMVRDIAGFIPDSASLEQYVKCLCGVGFIEEAIEV 178

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----------LIQAF 209
           + +LKE G+  SI   NS L GC+K  +T+L+++ Y ++I++G            LIQAF
Sbjct: 179 YFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLIQAF 238

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+V+ GYELL Q L+ GL P N  +NKLI+ FC+ KN+  +SE+LHTM+ARN  P  
Sbjct: 239 CDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTI 298

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +TY+E+INGLCK+ + LEAYRVFNDLK+RGY PD VMYTT+IHGLC+MG  G+ARK+WFE
Sbjct: 299 YTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFE 358

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ KG+ PN YTYN+M+HG  +  + E A  L+ EM +KGYG TTVT N +I+ LC  G+
Sbjct: 359 MMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGK 418

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +DEA+ +F++M++ GI  D ITYN+LI+G+CKEGK+
Sbjct: 419 SDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKV 454



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 156/348 (44%), Gaps = 45/348 (12%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           A++V  D  D  G++P+       I  LCE G   EA   + ++ + G+  +  T+N+ L
Sbjct: 317 AYRVFNDLKDR-GYAPDRVMYTTMIHGLCEMGSFGEARKLWFEMMDKGMQPNAYTYNTML 375

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G +K    +   +LY+++   GY         +I   C+ GK  E +E+ +++ E G+ 
Sbjct: 376 HGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEAFEVFKKMSETGIQ 435

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            +   +N LI  FC++        LL+ +VA++  P    YE +I   CK      A R+
Sbjct: 436 ADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDFEAAKRL 495

Query: 292 FNDLKERGYVPDTVMYTTVIHG-----------------------------------LCK 316
             D+  +G  P+   Y T++HG                                   LC 
Sbjct: 496 LGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCS 555

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G   +A +M+ +M   G+  +  TYNS+I G+C+   + ++  L  E++ +G   +  +
Sbjct: 556 RGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASS 615

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           Y +LI  LC +G  + A  L+ +M  KGI         LI G CK+G+
Sbjct: 616 YASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGR 663



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 133/305 (43%), Gaps = 12/305 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  + N +    +++  F+ A +  +   + G+     +    I  LC  G  +EA
Sbjct: 363 GMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGKSDEA 422

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           F  F K+ E G+     T+NS + G  K  + D    L ++L+             LI  
Sbjct: 423 FEVFKKMSETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIK 482

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG       LL  +   GL P    ++ ++    +  +F  V EL +    +     
Sbjct: 483 SCKDGDFEAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTT 542

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T  ++I+ LC   K  EA  +F  + E G   D + Y ++I G CK G +G +  +  
Sbjct: 543 TATCNKIISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLN 602

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E++ +GL P+  +Y S+I   C+  + E AKRL  +M+ KG          LI+GLC  G
Sbjct: 603 ELVAQGLQPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQG 662

Query: 389 RTDEA 393
           R  E 
Sbjct: 663 RATEG 667



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 113/260 (43%), Gaps = 12/260 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPN-SL-ELYIQCLCESGLI 154
           S  G   D ++ N L     +       M+ L+      P P+ SL EL I   C+ G  
Sbjct: 430 SETGIQADAITYNSLIRGFCKEGKVDERMNLLNELVAQDPQPSVSLYELLIIKSCKDGDF 489

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E A      +   G+  +  T+++ L G +K    + V +LY++    GY         +
Sbjct: 490 EAAKRLLGDMSSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKI 549

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C+ GK  E  E+ +++ E G+  +   +N LI  FC++   G+   LL+ +VA+  
Sbjct: 550 ISELCSRGKSDEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGL 609

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   +Y  +I  LC++     A R++ D+  +G  P   +   +I GLCK G   +   
Sbjct: 610 QPSASSYASLIIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMD 669

Query: 326 MWFEMIHKGLLPNEYTYNSM 345
               M+   + P +  +  +
Sbjct: 670 RLMGMLENKIKPKKAAFEDL 689



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/197 (20%), Positives = 74/197 (37%), Gaps = 12/197 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G  P+  + + +    +++  F+   +  + T   G+     +    I  LC  G  
Sbjct: 500 SSKGLHPNAYTYDTMLHGSLKSGDFEHVRELYNETCNKGYGTTTATCNKIISELCSRGKS 559

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           +EA   F K+ E G+     T+NS + G  K  +      L ++L+  G          L
Sbjct: 560 DEASEMFKKMSETGIKADAITYNSLIRGFCKEGKVGKSMNLLNELVAQGLQPSASSYASL 619

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C +G       L   ++  G+ P       LIS  C++       + L  M+    
Sbjct: 620 IIQLCQNGDAESAKRLWGDMVSKGIEPHANLREHLISGLCKQGRATEGMDRLMGMLENKI 679

Query: 266 APDNFTYEEVINGLCKS 282
            P    +E++   L +S
Sbjct: 680 KPKKAAFEDLAECLIQS 696


>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Glycine max]
          Length = 577

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/423 (56%), Positives = 296/423 (69%), Gaps = 24/423 (5%)

Query: 24  TQLRNLSIETKESQQLYTEIA---------KQVCKITRTKPRWEQTLLSDIPSFNFNDPL 74
            Q RNL+ ETK     +   A          ++C+ITRTKPRWE TLLS  PSFNF DP 
Sbjct: 22  AQFRNLTSETKNGDHEHPTKALDAKDCNFVYEICRITRTKPRWEDTLLSQYPSFNFKDPS 81

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF 134
           FF  +LK QNN  LS+RFF WL S  GFSPD  SCNVLF  LV+A A K+A   LDS GF
Sbjct: 82  FFLLYLKHQNNAFLSLRFFHWLCSSCGFSPDQSSCNVLFQVLVDAGAGKLAKSLLDSPGF 141

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P P SLE YIQCL  +G++E+A      LK +    S+ TWN++LLGC++  RTDLVW 
Sbjct: 142 TPEPASLEGYIQCLSGAGMVEDAV---DMLKRVVFCPSVATWNASLLGCLRARRTDLVWT 198

Query: 195 LYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           LY  ++ESG           YLI AFC + KV +GYELL+++LE+GL P+N  FN+LI  
Sbjct: 199 LYEQMMESGVVASINVETVGYLIMAFCAEYKVLKGYELLKELLENGLCPDNVVFNELIRG 258

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           FC++  + RVSE+LH M+A+   PD  TY+E+I GL K  K  E ++VFNDLK+RGY PD
Sbjct: 259 FCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGLLK-MKNSEGFQVFNDLKDRGYFPD 317

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            VMYTTVI GLC+M  LG+ARK+WFEMI KG  PNEYTYN M+HGYC+I +L EA+++ +
Sbjct: 318 RVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDLAEARKIFE 377

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M D+GY ETTV+Y T+I+GLCLHGRTDEA  LFEEM QKGI  D+ITYN LI+  CKE 
Sbjct: 378 DMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKALCKEV 437

Query: 424 KIV 426
           KIV
Sbjct: 438 KIV 440



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 82/192 (42%), Gaps = 9/192 (4%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           E F  F+ LK+ G F     + + + G  ++ R     KL+ ++I+ G+         ++
Sbjct: 301 EGFQVFNDLKDRGYFPDRVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMM 360

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C  G ++E  ++   + + G      ++  +IS  C          L   M  +   
Sbjct: 361 HGYCKIGDLAEARKIFEDMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIV 420

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +I  LCK  K ++A ++ N L  +G       ++ +I  LC +G    A  +
Sbjct: 421 PDLITYNCLIKALCKEVKIVKARKLLNLLLAQGLELSVFSFSPLIKQLCIVGNTKGAITL 480

Query: 327 WFEMIHKGLLPN 338
           W +M  + L P 
Sbjct: 481 WKDMHDRLLEPT 492


>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 861

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/416 (54%), Positives = 294/416 (70%), Gaps = 15/416 (3%)

Query: 26  LRNLSIETKESQ----QLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK 81
            RNL+ ET   Q    Q +T+   ++C ITR+KPRWE TL+S  PSFNF++P FF  +LK
Sbjct: 13  FRNLTTETTTKQDPKDQNFTQTLNEICTITRSKPRWENTLISQYPSFNFSNPKFFLSYLK 72

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
            QNN  LS+RF  WL SH GF PD  SCN LFD+LV+A A K A   L+   F P  +SL
Sbjct: 73  HQNNTFLSLRFLHWLTSHCGFKPDQSSCNALFDALVDAGAVKAAKSLLEYPDFVPKNDSL 132

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           E Y++ L E+G++EE F  F  LK++G   S  ++N  LL C+K+ RTDLVWKLY  +IE
Sbjct: 133 EGYVRLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKLYELMIE 192

Query: 202 SGY-----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           SG            LI+AFC + KV  GYELLRQVLE GL  +NT FN LI+ FC++K +
Sbjct: 193 SGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQY 252

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            RVSE+LH M+A    P  +TY+E+INGL K RK  EA+RVFNDLK+RGY PD VMYTTV
Sbjct: 253 DRVSEILHIMIAMKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTV 312

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I G C MG L +ARK+WFEMI KGL+PNEYTYN MI+GYC++ +  EA++L+ +M  +GY
Sbjct: 313 IKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGY 372

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            E  V+Y+T+I+GL LHG+TDEA  LF EM++KGI RD+I+YN+LI+G C+EG++ 
Sbjct: 373 AENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELA 428



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 134/263 (50%), Gaps = 9/263 (3%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELL 222
           SI T+   + G +K  + D  +++++DL + GY         +I+ FC+ G ++E  +L 
Sbjct: 270 SIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTVIKGFCDMGLLAEARKLW 329

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++++ GLVP    +N +I  +C+ ++F    +L   M  R  A +  +Y  +I+GL   
Sbjct: 330 FEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGLYLH 389

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            K  EA  +F+++  +G   D + Y ++I GLC+ G L  A  +  +++ +GL P+  ++
Sbjct: 390 GKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSVSSF 449

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             +I   C++ + E A RL K+M D+       T++ +I GL   G   +      +M  
Sbjct: 450 TPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLLKMLS 509

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
             +  ++ T+  LI    +E ++
Sbjct: 510 WKLKPNMQTFEHLIDCLKRENRL 532



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/281 (23%), Positives = 121/281 (43%), Gaps = 14/281 (4%)

Query: 103 SPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           +P + +   + + L++ R    AF+V  D  D  G+ P+       I+  C+ GL+ EA 
Sbjct: 268 NPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDR-GYFPDRVMYTTVIKGFCDMGLLAEAR 326

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             + ++ + G+  +  T+N  + G  K+       KLY D+   GY         +I   
Sbjct: 327 KLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGYAENVVSYSTMISGL 386

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              GK  E   L  ++   G+  +  ++N LI   C++    + + LL+ ++ +   P  
Sbjct: 387 YLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELAKATNLLNKLLIQGLEPSV 446

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            ++  +I  LCK      A R+  D+ +R   P    +  +I GL K G      +   +
Sbjct: 447 SSFTPLIKCLCKVGDTEGAMRLLKDMHDRHLEPIASTHDYMIIGLSKKGDFAQGMEWLLK 506

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           M+   L PN  T+  +I    R + L++   +   M  +GY
Sbjct: 507 MLSWKLKPNMQTFEHLIDCLKRENRLDDILIVLDLMFREGY 547


>gi|297812073|ref|XP_002873920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319757|gb|EFH50179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 483

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/441 (49%), Positives = 308/441 (69%), Gaps = 18/441 (4%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQ---------LYTEIAKQVCKIT 51
           M R    ++   R   R  QNPN Q+R+L++E+++S+           YTE+AK V  I 
Sbjct: 1   MSRGQSYLINFFRNRTR--QNPNAQIRSLTVESRDSESKPDEQKSAVSYTEMAKTVSTIM 58

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
           R + RW+QTL+SD PSF+F DPLFFR+ LK QNNV+ S+ FF+WL S+Y ++PD VS N+
Sbjct: 59  RQRQRWQQTLVSDFPSFDFADPLFFRQLLKSQNNVMFSLWFFRWLCSNYDYTPDSVSLNL 118

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LF +L++ +A K A  FLD+TGF P P  LE Y++CL E GL+EEA   ++ LKEMG+  
Sbjct: 119 LFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNVLKEMGISS 178

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQ 224
           S+ T NS LLGC+K  + D  W+L+ ++IES +       LIQA C+ G+VSEGYELL+Q
Sbjct: 179 SVVTCNSVLLGCLKARKLDRFWELHKEMIESEFDLERIRCLIQALCDGGEVSEGYELLKQ 238

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
            L+ GL P +  + KLIS FCE +N+  +SE+LHTM+A N  P  +TY+ +I GLC ++K
Sbjct: 239 GLKQGLDPGHDVYAKLISGFCEIENYACISEILHTMIAWNHFPSIYTYQRIIKGLCMNKK 298

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            LEAY +F +LKE+GY PD V+YTT+IHG C+ GWLG ARK+WFEMI KG+ PNE+ YN 
Sbjct: 299 ELEAYCIFKNLKEKGYAPDRVVYTTMIHGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNV 358

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+HG+ +   +   +  + EML  GYGETT++ NT+I GLC HG++DEA+ +F++M++ G
Sbjct: 359 MMHGHFKRGEISLGEAFYNEMLRNGYGETTLSCNTVIRGLCSHGKSDEAFEIFKKMSETG 418

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  + ITYN LI+G CKE K+
Sbjct: 419 VTPNAITYNALIKGLCKENKV 439



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/295 (21%), Positives = 117/295 (39%), Gaps = 51/295 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARA----FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G S  +V+CN +    ++AR     +++  + ++S     +   +   IQ LC+ G + E
Sbjct: 175 GISSSVVTCNSVLLGCLKARKLDRFWELHKEMIES---EFDLERIRCLIQALCDGGEVSE 231

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            +    +  + G+      +   + G  +I+    + ++ H +I   +         +I+
Sbjct: 232 GYELLKQGLKQGLDPGHDVYAKLISGFCEIENYACISEILHTMIAWNHFPSIYTYQRIIK 291

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C + K  E Y + + + E G  P+   +  +I  FCEK   G   +L   M+ +   P
Sbjct: 292 GLCMNKKELEAYCIFKNLKEKGYAPDRVVYTTMIHGFCEKGWLGSARKLWFEMIKKGMRP 351

Query: 268 DNFTYE-----------------------------------EVINGLCKSRKRLEAYRVF 292
           + F Y                                     VI GLC   K  EA+ +F
Sbjct: 352 NEFAYNVMMHGHFKRGEISLGEAFYNEMLRNGYGETTLSCNTVIRGLCSHGKSDEAFEIF 411

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
             + E G  P+ + Y  +I GLCK   +    K++ E+   GL P+   Y +++ 
Sbjct: 412 KKMSETGVTPNAITYNALIKGLCKENKVEKGMKLYKELKALGLKPSGAAYAALVR 466


>gi|15239614|ref|NP_197396.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635758|sp|Q8GYM2.2|PP393_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18950
 gi|332005249|gb|AED92632.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 483

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/441 (48%), Positives = 301/441 (68%), Gaps = 18/441 (4%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKE---------SQQLYTEIAKQVCKIT 51
           M R    +++  R   R  +NPNTQ+R+L++E+++         S   YTE+AK V  I 
Sbjct: 1   MSRGQSYLISFFRNRTR--KNPNTQIRSLTVESRDCESKPDEQKSAVSYTEMAKTVSTIM 58

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
           R + RW+QTL+SD PSF+F DPLFF E LK QNNVL S+ FF+WL S+Y ++P  VS N+
Sbjct: 59  RERQRWQQTLVSDFPSFDFADPLFFGELLKSQNNVLFSLWFFRWLCSNYDYTPGPVSLNI 118

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LF +L++ +A K A  FLD+TGF P P  LE Y++CL E GL+EEA   ++ LK+MG+  
Sbjct: 119 LFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNVLKDMGISS 178

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQ 224
           S+ T NS LLGC+K  + D  W+L+ +++ES +       LI+A C+ G VSEGYELL+Q
Sbjct: 179 SVVTCNSVLLGCLKARKLDRFWELHKEMVESEFDSERIRCLIRALCDGGDVSEGYELLKQ 238

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
            L+ GL P    + KLIS FCE  N+  +SE+LHTM+A N  P  + Y+++I GLC ++K
Sbjct: 239 GLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKK 298

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
           +LEAY +F +LK++GY PD V+YTT+I G C+ GWLG ARK+WFEMI KG+ PNE+ YN 
Sbjct: 299 QLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNV 358

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           MIHG+ +   +   +  + EML  GYG T ++ NT+I G C HG++DEA+ +F+ M++ G
Sbjct: 359 MIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETG 418

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  + ITYN LI+G+CKE K+
Sbjct: 419 VTPNAITYNALIKGFCKENKV 439



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 57/292 (19%), Positives = 110/292 (37%), Gaps = 45/292 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP-NPNSLELYIQCLCESGLIEEAFC 159
           G S  +V+CN +    ++AR      +       S  +   +   I+ LC+ G + E + 
Sbjct: 175 GISSSVVTCNSVLLGCLKARKLDRFWELHKEMVESEFDSERIRCLIRALCDGGDVSEGYE 234

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
              +  + G+      +   + G  +I     + ++ H +I   +         +I+  C
Sbjct: 235 LLKQGLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLC 294

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            + K  E Y + + + + G  P+   +  +I  FCEK   G   +L   M+ +   P+ F
Sbjct: 295 MNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEF 354

Query: 271 TYE-----------------------------------EVINGLCKSRKRLEAYRVFNDL 295
            Y                                     +I G C   K  EA+ +F ++
Sbjct: 355 AYNVMIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNM 414

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
            E G  P+ + Y  +I G CK   +    K++ E+   GL P+   Y +++ 
Sbjct: 415 SETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVR 466


>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]
          Length = 473

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 164/269 (60%), Gaps = 10/269 (3%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQAFCNDGKVS 216
           +G+  S++  N A+   ++  R DLV++L+           D     +L++A   +G+  
Sbjct: 143 LGIHPSLRALNFAMRSALRAARPDLVFRLFSAFSSSPDFPGDAATVAFLVRACSAEGRPL 202

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +G  LLR     G+ P+  A   L++ F    NFG+VSE LH M+A    PD   Y+ +I
Sbjct: 203 DGLRLLRDGARRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRII 262

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +GL   +   EA RVFN++K RGY  D V YTT I GLCKMG + +AR++W EM+ KG+ 
Sbjct: 263 HGLFAHKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGME 322

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PNEY Y S++  YC+  + E A++++ EML KG  E+TV+ N L+ G C HGR DEA  +
Sbjct: 323 PNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGM 382

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           FEEM +KGI  DVITYN LIQG CK G++
Sbjct: 383 FEEMVKKGIEHDVITYNILIQGLCKAGRL 411



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 79/166 (47%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D +     I   C  G + E  ++  ++++ G+ P   A+  L++ +C+  +F    ++ 
Sbjct: 289 DAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVY 348

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ +       +   ++ G C   +  EA  +F ++ ++G   D + Y  +I GLCK 
Sbjct: 349 DEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKA 408

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           G L +A +++ +++  GL P+  T+  +I   C    ++ A  L K
Sbjct: 409 GRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLK 454



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 110/252 (43%), Gaps = 20/252 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF-KVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L +   L  +   A  F KV+  +  + + G  P+    +  I  L    +  EA
Sbjct: 215 GVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRIIHGLFAHKMGSEA 274

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++K  G      T+ +A+ G  K+   D   ++++++++ G          L+  
Sbjct: 275 LRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAY 334

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVARNR 265
           +C  G      ++  ++L  GL     + N L++ FC     GRV E L     MV +  
Sbjct: 335 YCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFC---THGRVDEALGMFEEMVKKGI 391

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  +I GLCK+ +  EA +V+  L   G  P    +T +I  +C+ G +  A +
Sbjct: 392 EHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVE 451

Query: 326 MW--FEMIHKGL 335
           +   F + H+ L
Sbjct: 452 LLKPFFIAHRFL 463


>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group]
 gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]
          Length = 564

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 164/269 (60%), Gaps = 10/269 (3%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQAFCNDGKVS 216
           +G+  S++  N A+   ++  R DLV++L+           D     +L++A   +G+  
Sbjct: 143 LGIHPSLRALNFAMRSALRAARPDLVFRLFSAFSSSPDFPGDAATVAFLVRACSAEGRPL 202

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +G  LLR     G+ P+  A   L++ F    NFG+VSE LH M+A    PD   Y+ +I
Sbjct: 203 DGLRLLRDGARRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRII 262

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +GL   +   EA RVFN++K RGY  D V YTT I GLCKMG + +AR++W EM+ KG+ 
Sbjct: 263 HGLFAHKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGME 322

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PNEY Y S++  YC+  + E A++++ EML KG  E+TV+ N L+ G C HGR DEA  +
Sbjct: 323 PNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGM 382

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           FEEM +KGI  DVITYN LIQG CK G++
Sbjct: 383 FEEMVKKGIEHDVITYNILIQGLCKAGRL 411



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 148/340 (43%), Gaps = 19/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF-KVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L +   L  +   A  F KV+  +  + + G  P+    +  I  L    +  EA
Sbjct: 215 GVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRIIHGLFAHKMGSEA 274

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++K  G      T+ +A+ G  K+   D   ++++++++ G          L+  
Sbjct: 275 LRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAY 334

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVARNR 265
           +C  G      ++  ++L  GL     + N L++ FC     GRV E L     MV +  
Sbjct: 335 YCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFC---THGRVDEALGMFEEMVKKGI 391

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  +I GLCK+ +  EA +V+  L   G  P    +T +I  +C+ G +  A +
Sbjct: 392 EHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVE 451

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M  KGL P     +S+I+G+C+    E+       ML K       T+N+L+  L 
Sbjct: 452 LLKVMHAKGLEPLARINDSIINGFCKARRPEDGMAWLAGMLKKNLKPREHTFNSLVELLS 511

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             GR D+A  +   M + G     +    L++  C  GK+
Sbjct: 512 SSGRVDDALLVLNTMFKIGHELGSLACTMLVEQLCT-GKL 550


>gi|242035667|ref|XP_002465228.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
 gi|241919082|gb|EER92226.1| hypothetical protein SORBIDRAFT_01g034600 [Sorghum bicolor]
          Length = 557

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 141/385 (36%), Positives = 206/385 (53%), Gaps = 40/385 (10%)

Query: 55  PRWEQTLLSDIPSFNFNDPLFFREFLKQQ-NNVLLSIRFFQWLHSHYGF---SPDLVSCN 110
           PR++  LLS +P      P F R  L +    V  S+RF + L  H       PD    N
Sbjct: 46  PRFQFYLLSLVPRAVLLHPDFARLTLSRLLPAVAPSLRFLRSLSPHLPAPTPGPDTAQAN 105

Query: 111 VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170
           V                       SP    ++ ++  L  +   + A    S L   G+ 
Sbjct: 106 V-----------------------SPPLPGVDKFLLRLPPNLTADVAELLTSHL---GIH 139

Query: 171 GSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----------GYLIQAFCNDGKVSEGYE 220
            S++ +N A    ++  R DLV++L+     S          G L +A+  +G+  +G  
Sbjct: 140 LSLRVFNVASFFALRAARPDLVFRLFSAFSSSPDFPGNARTVGCLARAYAAEGRPLDGLG 199

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LLR     G      A   LI  F    NFG+VS+ LH M++    PD   Y+ VI+GL 
Sbjct: 200 LLRDAARRGSPLPADAAADLIGAFAADGNFGKVSDTLHLMISTGCTPDKVIYQRVIHGLF 259

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           + R   EA RVF ++K+RGY  D ++Y+TVIHGLC+M  +GDA++MW EM+ +G+ PNEY
Sbjct: 260 RRRMGGEALRVFREIKQRGYQIDRIIYSTVIHGLCEMRLIGDAQQMWDEMVDRGIQPNEY 319

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            Y S++  YCR+ +LE+A++++ EML KG+ +TTV+ N LI G C+HGR  +A  +FEEM
Sbjct: 320 AYCSLVSYYCRVGDLEKARKVYDEMLAKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEM 379

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
           + KGI  DVITY+TLI+G CK GK+
Sbjct: 380 SVKGIKHDVITYDTLIRGLCKVGKL 404



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/228 (23%), Positives = 100/228 (43%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D I    +I   C    + +  ++  ++++ G+ P   A+  L+S +C   +  +  ++ 
Sbjct: 282 DRIIYSTVIHGLCEMRLIGDAQQMWDEMVDRGIQPNEYAYCSLVSYYCRVGDLEKARKVY 341

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+A+       +   +I G C   +  +A  VF ++  +G   D + Y T+I GLCK+
Sbjct: 342 DEMLAKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSVKGIKHDVITYDTLIRGLCKV 401

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G L  A +M+   +  GL P   T++ +I   C    +  A  L   M  KG      + 
Sbjct: 402 GKLDSAIQMYEWFLSSGLEPTVSTFSPLIGAMCENGQVHAAVDLINLMRAKGLEPLVWSN 461

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +I G C   R+DE       M +  I     T++ L++     G++
Sbjct: 462 DRIINGFCKINRSDEGMAWLAGMLKDNIKPRKQTFDYLVESLSTCGRL 509



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 125/304 (41%), Gaps = 9/304 (2%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +  + STG +P+    +  I  L    +  EA   F ++K+ G       +++ + G  +
Sbjct: 236 LHLMISTGCTPDKVIYQRVIHGLFRRRMGGEALRVFREIKQRGYQIDRIIYSTVIHGLCE 295

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           +       +++ ++++ G          L+  +C  G + +  ++  ++L  G      +
Sbjct: 296 MRLIGDAQQMWDEMVDRGIQPNEYAYCSLVSYYCRVGDLEKARKVYDEMLAKGFKQTTVS 355

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            N LI  FC         E+   M  +    D  TY+ +I GLCK  K   A +++    
Sbjct: 356 CNILIKGFCVHGRVYDALEVFEEMSVKGIKHDVITYDTLIRGLCKVGKLDSAIQMYEWFL 415

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  P    ++ +I  +C+ G +  A  +   M  KGL P  ++ + +I+G+C+I+  +
Sbjct: 416 SSGLEPTVSTFSPLIGAMCENGQVHAAVDLINLMRAKGLEPLVWSNDRIINGFCKINRSD 475

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           E       ML         T++ L+  L   GR D+A  +   M + G          L+
Sbjct: 476 EGMAWLAGMLKDNIKPRKQTFDYLVESLSTCGRLDDALLVLNIMFKVGFGLGRFACTILV 535

Query: 417 QGYC 420
              C
Sbjct: 536 DKLC 539


>gi|226494779|ref|NP_001147294.1| transferase, transferring glycosyl groups [Zea mays]
 gi|195609598|gb|ACG26629.1| transferase, transferring glycosyl groups [Zea mays]
 gi|414866930|tpg|DAA45487.1| TPA: hypothetical protein ZEAMMB73_715808 [Zea mays]
          Length = 546

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 141/383 (36%), Positives = 202/383 (52%), Gaps = 38/383 (9%)

Query: 55  PRWEQTLLSDIPSFNFNDPLFFREFLK-QQNNVLLSIRFFQWLHSHY-GFSPDLVSCNVL 112
           PR E  LLS +P      P F R  L      V  S+RF + L  H  G +PD    NV 
Sbjct: 44  PRLEPRLLSLVPRAVLLHPDFARLTLSCLLPAVAPSLRFLRALSPHLPGPAPDTAPVNV- 102

Query: 113 FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
                                 SP    ++ ++  L      + A    S L+   +  S
Sbjct: 103 ----------------------SPPLPGVDKFLLRLPPHLAADVAELLSSYLR---IHLS 137

Query: 173 IKTWNSALLGCIKIDRTDLVW----------KLYHDLIESGYLIQAFCNDGKVSEGYELL 222
           ++ +N A    ++  R DLV+          +   +    G L +A+  +G+  +G  LL
Sbjct: 138 LRAFNVASCSALRAARPDLVFRFFSAFSSSPEFPGNATTVGCLARAYAAEGRPLDGLGLL 197

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           R     G  P   A   LI  F  + NFG+VS+ LH M+A    PD   Y+ VI+GL + 
Sbjct: 198 RDAARRGSPPPADAVADLIGAFAAEGNFGKVSDTLHLMIATGCTPDKVIYQRVIHGLFRR 257

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           R   EA RVF ++K+RGY  D V YTTVIHGLC+M  +G A++MW EM+ +G+ PNEY Y
Sbjct: 258 RMGGEALRVFREIKQRGYDIDGVTYTTVIHGLCEMRLIGVAQQMWDEMVGRGIAPNEYAY 317

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
            S++  YCR+ +L++A++++ EML+KG+ +TTV+ N LI G C+HGR  +A  +FEEM+ 
Sbjct: 318 CSLVTYYCRVGDLDKARKVYDEMLEKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSI 377

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KGI  DVITY+TLI G  K GK+
Sbjct: 378 KGIKHDVITYDTLINGLFKAGKL 400



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 123/288 (42%), Gaps = 9/288 (3%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +  + +TG +P+    +  I  L    +  EA   F ++K+ G      T+ + + G  +
Sbjct: 232 LHLMIATGCTPDKVIYQRVIHGLFRRRMGGEALRVFREIKQRGYDIDGVTYTTVIHGLCE 291

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           +    +  +++ +++  G          L+  +C  G + +  ++  ++LE G      +
Sbjct: 292 MRLIGVAQQMWDEMVGRGIAPNEYAYCSLVTYYCRVGDLDKARKVYDEMLEKGFKQTTVS 351

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            N LI  FC         E+   M  +    D  TY+ +INGL K+ K   A R++  L 
Sbjct: 352 CNILIKGFCVHGRVYDALEVFEEMSIKGIKHDVITYDTLINGLFKAGKLDLAMRMYEWLL 411

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  P +  +  +I  +C+ G +  A  +   M  KGL P  +T + +I G+C+I+  +
Sbjct: 412 SSGLEPTSSTFGRLICAMCENGQVHAAVDLIKSMRTKGLEPPVWTNDHIISGFCKINLSD 471

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           E       ML         T++ L+  L   GR D+   +   M + G
Sbjct: 472 EGMAWLAGMLKDNIRPQRQTFDYLVESLSTSGRLDDVLLVLNIMFKVG 519



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/241 (21%), Positives = 103/241 (42%), Gaps = 9/241 (3%)

Query: 194 KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           +++ ++ + GY         +I   C    +    ++  +++  G+ P   A+  L++ +
Sbjct: 265 RVFREIKQRGYDIDGVTYTTVIHGLCEMRLIGVAQQMWDEMVGRGIAPNEYAYCSLVTYY 324

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C   +  +  ++   M+ +       +   +I G C   +  +A  VF ++  +G   D 
Sbjct: 325 CRVGDLDKARKVYDEMLEKGFKQTTVSCNILIKGFCVHGRVYDALEVFEEMSIKGIKHDV 384

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           + Y T+I+GL K G L  A +M+  ++  GL P   T+  +I   C    +  A  L K 
Sbjct: 385 ITYDTLINGLFKAGKLDLAMRMYEWLLSSGLEPTSSTFGRLICAMCENGQVHAAVDLIKS 444

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M  KG      T + +I+G C    +DE       M +  I     T++ L++     G+
Sbjct: 445 MRTKGLEPPVWTNDHIISGFCKINLSDEGMAWLAGMLKDNIRPQRQTFDYLVESLSTSGR 504

Query: 425 I 425
           +
Sbjct: 505 L 505


>gi|222624963|gb|EEE59095.1| hypothetical protein OsJ_10946 [Oryza sativa Japonica Group]
          Length = 318

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 111/252 (44%), Positives = 155/252 (61%), Gaps = 10/252 (3%)

Query: 184 IKIDRTDLVWKLYH----------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
           ++  R DLV++L+           D     +L++A   +G+  +G  LLR     G+ P+
Sbjct: 5   LRAARPDLVFRLFSAFSSSPDFPGDAATVAFLVRACSAEGRPLDGLRLLRDGARRGVPPQ 64

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             A   L++ F    NFG+VSE LH M+A    PD   Y+ +I+GL   +   EA RVFN
Sbjct: 65  LDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRIIHGLFAHKMGSEALRVFN 124

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++K RGY  D V YTT I GLCKMG + +AR++W EM+ KG+ PNEY Y S++  YC+  
Sbjct: 125 EIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAG 184

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           + E A++++ EML KG  E+TV+ N L+ G C HGR DEA  +FEEM +KGI  DVITYN
Sbjct: 185 DFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYN 244

Query: 414 TLIQGYCKEGKI 425
            LIQG CK G++
Sbjct: 245 ILIQGLCKAGRL 256



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/166 (22%), Positives = 79/166 (47%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D +     I   C  G + E  ++  ++++ G+ P   A+  L++ +C+  +F    ++ 
Sbjct: 134 DAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMARKVY 193

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ +       +   ++ G C   +  EA  +F ++ ++G   D + Y  +I GLCK 
Sbjct: 194 DEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQGLCKA 253

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           G L +A +++ +++  GL P+  T+  +I   C    ++ A  L K
Sbjct: 254 GRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLK 299



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 59/241 (24%), Positives = 105/241 (43%), Gaps = 18/241 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF-KVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L +   L  +   A  F KV+  +  + + G  P+    +  I  L    +  EA
Sbjct: 60  GVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRIIHGLFAHKMGSEA 119

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++K  G      T+ +A+ G  K+   D   ++++++++ G          L+  
Sbjct: 120 LRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAY 179

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVARNR 265
           +C  G      ++  ++L  GL     + N L++ FC     GRV E L     MV +  
Sbjct: 180 YCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFC---THGRVDEALGMFEEMVKKGI 236

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  +I GLCK+ +  EA +V+  L   G  P    +T +I  +C+ G +  A +
Sbjct: 237 EHDVITYNILIQGLCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVE 296

Query: 326 M 326
           +
Sbjct: 297 L 297



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 69/177 (38%), Gaps = 12/177 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G++ D V+     D L +      A      +   G  PN  +    +   C++G  E A
Sbjct: 130 GYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGMEPNEYAYCSLVAYYCKAGDFEMA 189

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
              + ++   G+  S  + N  + G     R D    ++         HD+I    LIQ 
Sbjct: 190 RKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGMFEEMVKKGIEHDVITYNILIQG 249

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
            C  G++SE  ++  Q+L  GL P  + F  LI   CE+       ELL      +R
Sbjct: 250 LCKAGRLSEAIQVYEQLLSSGLEPSVSTFTPLIDTMCEEGQVDAAVELLKPFFIAHR 306


>gi|255551529|ref|XP_002516810.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543898|gb|EEF45424.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 276

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 135/327 (41%), Positives = 173/327 (52%), Gaps = 97/327 (29%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKES-------------------QQLYT 41
           M RAP S++  LRQ+P  + N +TQ R L+IE K++                   +Q +T
Sbjct: 1   MARAPSSIVIFLRQSPSRY-NSSTQTRKLNIECKDADFNRYGLNLNQNEEVFHSVKQHFT 59

Query: 42  EIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYG 101
           ++AK+V +ITRTK RWEQTLLSD PSFN  DP FF E L+                    
Sbjct: 60  DVAKEVAQITRTKARWEQTLLSDFPSFNLTDPQFFFERLRL------------------- 100

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
               +V  NV    LV+  A  V + F DS+ F                           
Sbjct: 101 ----VVKLNVCEGGLVQD-AVDVFVKFKDSSAFP-------------------------- 129

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
                     SI TWNSALLGC+ +   DL W                 NDG+V +GYEL
Sbjct: 130 ----------SIVTWNSALLGCLNVGNNDLFW-----------------NDGQVLKGYEL 162

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           LR+VLE+GLVP N AFN LIS FCE++NF RVSELLH ++A+N  PD + Y+EVI+GLCK
Sbjct: 163 LREVLENGLVPRNVAFNALISGFCEQRNFSRVSELLHIIIAKNCTPDIYRYQEVIHGLCK 222

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYT 308
           S+  LEA+RVF DLK+RGY  + V+YT
Sbjct: 223 SKMSLEAFRVFKDLKDRGYALNRVVYT 249



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/195 (30%), Positives = 85/195 (43%), Gaps = 52/195 (26%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           +CE GL+++A   F K K+   F SI TWNSALLGC+ +   DL W              
Sbjct: 106 VCEGGLVQDAVDVFVKFKDSSAFPSIVTWNSALLGCLNVGNNDLFW-------------- 151

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
              NDG+V +GYELLR+VLE+GLVP                                   
Sbjct: 152 ---NDGQVLKGYELLREVLENGLVPR---------------------------------- 174

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            N  +  +I+G C+ R       + + +  +   PD   Y  VIHGLCK     +A +++
Sbjct: 175 -NVAFNALISGFCEQRNFSRVSELLHIIIAKNCTPDIYRYQEVIHGLCKSKMSLEAFRVF 233

Query: 328 FEMIHKGLLPNEYTY 342
            ++  +G   N   Y
Sbjct: 234 KDLKDRGYALNRVVY 248



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 45/92 (48%)

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
           L+ Y +  ++ E G VP  V +  +I G C+        ++   +I K   P+ Y Y  +
Sbjct: 157 LKGYELLREVLENGLVPRNVAFNALISGFCEQRNFSRVSELLHIIIAKNCTPDIYRYQEV 216

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           IHG C+     EA R+ K++ D+GY    V Y
Sbjct: 217 IHGLCKSKMSLEAFRVFKDLKDRGYALNRVVY 248



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/143 (21%), Positives = 62/143 (43%), Gaps = 9/143 (6%)

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG----WLGDAR-----KMWFE 329
           +C+     +A  VF   K+    P  V + + + G   +G    +  D +     ++  E
Sbjct: 106 VCEGGLVQDAVDVFVKFKDSSAFPSIVTWNSALLGCLNVGNNDLFWNDGQVLKGYELLRE 165

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++  GL+P    +N++I G+C   N      L   ++ K        Y  +I GLC    
Sbjct: 166 VLENGLVPRNVAFNALISGFCEQRNFSRVSELLHIIIAKNCTPDIYRYQEVIHGLCKSKM 225

Query: 390 TDEAYHLFEEMAQKGIFRDVITY 412
           + EA+ +F+++  +G   + + Y
Sbjct: 226 SLEAFRVFKDLKDRGYALNRVVY 248



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 48/117 (41%), Gaps = 9/117 (7%)

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN---------LEEAKRLHKE 364
           +C+ G + DA  ++ +       P+  T+NS + G   + N         + +   L +E
Sbjct: 106 VCEGGLVQDAVDVFVKFKDSSAFPSIVTWNSALLGCLNVGNNDLFWNDGQVLKGYELLRE 165

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +L+ G     V +N LI+G C          L   +  K    D+  Y  +I G CK
Sbjct: 166 VLENGLVPRNVAFNALISGFCEQRNFSRVSELLHIIIAKNCTPDIYRYQEVIHGLCK 222


>gi|357119779|ref|XP_003561611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18950-like [Brachypodium distachyon]
          Length = 547

 Score =  209 bits (533), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/265 (42%), Positives = 153/265 (57%), Gaps = 10/265 (3%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIES----------GYLIQAFCNDGKVSEGYEL 221
           SI   N+A    ++  R DLV+ L+     S            L +A   D +  +G  L
Sbjct: 132 SIPALNAASRAALRAARPDLVFNLFSTFSSSPDFPGDADTVSCLARACAADRRPLDGLRL 191

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           LR     G  P + A   L+  F    NF +VS+ LH M++    PD   Y+ +I+GL  
Sbjct: 192 LRDAARRGSPPSSAAAADLVKAFAASGNFPKVSDTLHLMISAGYPPDTVVYQCIIHGLFA 251

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
            +   EA RVFN++K RGY  D V YTTVI GLCK+G + DARKMW EM+HKG+ PNEY 
Sbjct: 252 HKMGGEALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIVDARKMWDEMVHKGMEPNEYA 311

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           Y S +  YC+  + + A +++ EML KG+ E+TV+ N ++AG C+H R DEA  +FE M 
Sbjct: 312 YCSFLGYYCKAGDFDMAYKVYGEMLGKGFKESTVSCNIILAGFCVHMRVDEAISVFEGMV 371

Query: 402 QKGIFRDVITYNTLIQGYCKEGKIV 426
            +GI  DV TYNTLIQG CK G++ 
Sbjct: 372 TEGIEHDVFTYNTLIQGLCKVGRLA 396



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/299 (22%), Positives = 123/299 (41%), Gaps = 9/299 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G+ P+    +  I  L    +  EA   F+++K  G      T+ + + G  K+    
Sbjct: 232 SAGYPPDTVVYQCIIHGLFAHKMGGEALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIV 291

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              K++ +++  G           +  +C  G     Y++  ++L  G      + N ++
Sbjct: 292 DARKMWDEMVHKGMEPNEYAYCSFLGYYCKAGDFDMAYKVYGEMLGKGFKESTVSCNIIL 351

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           + FC          +   MV      D FTY  +I GLCK  +  EA R++  L   G  
Sbjct: 352 AGFCVHMRVDEAISVFEGMVTEGIEHDVFTYNTLIQGLCKVGRLAEAIRMYQRLLSSGLE 411

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P    +T +I  +C+ G +  A +++  M  KG  P   + +S+I+G+C+    ++A   
Sbjct: 412 PTVSTFTPLIDTMCEEGQVDHAVELFRLMQAKGFEPLVRSNDSVINGFCKARRADDAMAW 471

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
              ML         T+N+L+  L    R D+A  +   M + G   D +    L+   C
Sbjct: 472 LAGMLKSNLKPQKQTFNSLLELLSTSERVDDALLILNTMLKSGFGLDSLPCTILVDKLC 530



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 47/106 (44%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           D  ++  +   +G  P+      ++  +    N  +       M+  GY   TV Y  +I
Sbjct: 187 DGLRLLRDAARRGSPPSSAAAADLVKAFAASGNFPKVSDTLHLMISAGYPPDTVVYQCII 246

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            GL  H    EA  +F E+  +G   D +TY T+I G CK G IV+
Sbjct: 247 HGLFAHKMGGEALRVFNEIKLRGYDIDAVTYTTVIDGLCKVGNIVD 292


>gi|26450121|dbj|BAC42180.1| unknown protein [Arabidopsis thaliana]
          Length = 217

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 86/173 (49%), Positives = 127/173 (73%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           +SE+LHTM+A N  P  + Y+++I GLC ++K+LEAY +F +LK++GY PD V+YTT+I 
Sbjct: 1   MSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIR 60

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C+ GWLG ARK+WFEMI KG+ PNE+ YN +IHG+ +   +   +  + EML  GYG 
Sbjct: 61  GFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVIIHGHFKRGEISLVEAFYNEMLRNGYGG 120

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T ++ NT+I G C HG++DEA+ +F+ M++ G+  + ITYN LI+G+CKE K+
Sbjct: 121 TMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKV 173



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 93/196 (47%)

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           T + W  +  +     +I+  C + K  E Y + + + + G  P+   +  +I  FCEK 
Sbjct: 7   TMIAWNHFPSMYIYQKIIKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKG 66

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
             G   +L   M+ +   P+ F Y  +I+G  K  +       +N++   GY    +   
Sbjct: 67  WLGSARKLWFEMIKKGMRPNEFAYNVIIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCN 126

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I G C  G   +A +++  M   G+ PN  TYN++I G+C+ + +E+  +L+KE+   
Sbjct: 127 TMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKAL 186

Query: 369 GYGETTVTYNTLIAGL 384
           G   + + Y  L+  L
Sbjct: 187 GLKPSGMAYAALVRNL 202



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 71/160 (44%), Gaps = 9/160 (5%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L   G++P+       I+  CE G +  A   + ++ + G+  +   +N  + G  K   
Sbjct: 43  LKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNVIIHGHFKRGE 102

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
             LV   Y++++ +GY         +I+ FC+ GK  E +E+ + + E G+ P    +N 
Sbjct: 103 ISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETGVTPNAITYNA 162

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           LI  FC++    +  +L   + A    P    Y  ++  L
Sbjct: 163 LIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNL 202



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 71/179 (39%), Gaps = 9/179 (5%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I+ LC +    EA+C F  LK+ G       + + + G  +        KL+ ++I+ G 
Sbjct: 24  IKGLCMNKKQLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGM 83

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    +I      G++S       ++L +G      + N +I  FC         E
Sbjct: 84  RPNEFAYNVIIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFE 143

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +   M      P+  TY  +I G CK  K  +  +++ +LK  G  P  + Y  ++  L
Sbjct: 144 IFKNMSETGVTPNAITYNALIKGFCKENKVEKGLKLYKELKALGLKPSGMAYAALVRNL 202


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 190/349 (54%), Gaps = 19/349 (5%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---------TGFSPNPNSLELYIQ 146
           L + +GF+P ++S N + D+L+  R+     D+ D+          G SPN  +  + I+
Sbjct: 157 LANRHGFAPTVLSYNAVLDALLR-RSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIR 215

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK---------IDRTDLVWKLYH 197
            +   G +E+      K+++ G+  ++ T+N+ +    K         + R   V  +  
Sbjct: 216 GVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAA 275

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           +LI    +I   C  G++SE  EL+ ++   GLVP+   +N L++ FC++ N  +   LL
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLL 335

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             MV +  +P+  TY  +IN +CK+     A  +F+ ++ RG  P+   YTT+I G C+ 
Sbjct: 336 SEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQK 395

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + +A K+  EMI  G  P+  TYN+++HGYC +  ++EA  + + M+++G     V+Y
Sbjct: 396 GLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSY 455

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +T+IAG C      +A+ + EEM +KG+  D +TY++LIQG C + K+V
Sbjct: 456 STVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLV 504



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 175/337 (51%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ + NV+   +V     +  + F+   +  G SPN  +    I   C+   ++EA
Sbjct: 202 GVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEA 261

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   GV  ++ ++NS + G     R   V +L  ++   G          L+  
Sbjct: 262 MALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNG 321

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G + +G  LL +++  GL P    +  LI+  C+  N  R  E+   M  R   P+
Sbjct: 322 FCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPN 381

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G C+     EAY+V +++   G+ P  V Y  ++HG C +G + +A  +  
Sbjct: 382 ERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILR 441

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ +GL P+  +Y+++I G+CR   L +A ++ +EM++KG    TVTY++LI GLCL  
Sbjct: 442 GMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQ 501

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  EA+ LF EM ++G+  D +TY +LI  YC +G++
Sbjct: 502 KLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGEL 538



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 100/323 (30%), Positives = 160/323 (49%), Gaps = 35/323 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N L +   +       +  L      G SPN  +    I C+C++G +  A
Sbjct: 307 GLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRA 366

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++  G+  + +T+ +                          LI  FC  G ++E
Sbjct: 367 VEIFDQMRVRGLRPNERTYTT--------------------------LIDGFCQKGLMNE 400

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNRAPDNFTYEE 274
            Y++L +++  G  P    +N L+  +C     GRV E   +L  MV R   PD  +Y  
Sbjct: 401 AYKVLSEMIVSGFSPSVVTYNALVHGYCF---LGRVQEAVGILRGMVERGLPPDVVSYST 457

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VI G C+ R+  +A+++  ++ E+G +PDTV Y+++I GLC    L +A  ++ EM+ +G
Sbjct: 458 VIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG 517

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P+E TY S+I+ YC    L +A RLH EM+ +G+    VTY+ LI GL    RT  A 
Sbjct: 518 LPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAK 577

Query: 395 HLFEEMAQKGIFRDVITYNTLIQ 417
            L  ++  +    D +TYNTLI+
Sbjct: 578 RLLLKLFYEESVPDDVTYNTLIE 600



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/387 (22%), Positives = 161/387 (41%), Gaps = 62/387 (16%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   L + + +A     A++  D     G  PN  +    I   C+ GL+ EA
Sbjct: 342 GLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEA 401

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +   S++   G   S+ T+N+ + G   + R      +   ++E G          +I  
Sbjct: 402 YKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAG 461

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC + ++ + +++  +++E G++P+   ++ LI   C ++      +L   M+ R   PD
Sbjct: 462 FCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPD 521

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL-------------- 314
             TY  +IN  C   +  +A R+ +++ +RG++PD V Y+ +I+GL              
Sbjct: 522 EVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKRLLL 581

Query: 315 ------------------------------------CKMGWLGDARKMWFEMIHKGLLPN 338
                                               C  G + +A +++  M+ +   PN
Sbjct: 582 KLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPN 641

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YN MIHG+ R  N+ +A  L+ E+    +   TV    L+  L   G  DE   L +
Sbjct: 642 AAIYNLMIHGHSRGGNVHKAYNLYMELEHSSFACHTVAVIALVKALAREGMNDELSRLLQ 701

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + +     D      L++   KEG +
Sbjct: 702 NILRSCRLNDAKVAKVLVEVNFKEGNM 728


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 180/336 (53%), Gaps = 16/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEAR------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           GF P ++S N + D++V +R      A +V  + + S   SPN  +  + I+  C  G +
Sbjct: 172 GFMPGVLSYNSVLDAIVRSRGSVKLSAEEVYREMIRSR-VSPNVYTYNILIRGFCSVGEL 230

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           ++    F +++  G   ++ T+N+ +    K+ R D  + L           +LI    +
Sbjct: 231 QKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVI 290

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C +G + E +E+L ++   G  P+   +N L++ +C++ NF +   +   MV    
Sbjct: 291 INGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGV 350

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +P   TY  +IN +CK+R    A   F+ ++ RG  P+   YTT+I G  + G L +A +
Sbjct: 351 SPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYR 410

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM   G  P+  TYN+ IHG+C ++ +EEA  + +EM++KG     V+Y+T+I+G C
Sbjct: 411 ILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFC 470

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             G  D A+ + +EM +KG+  D +TY++LIQG C+
Sbjct: 471 RKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 506



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 195/417 (46%), Gaps = 38/417 (9%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRFFQWLHS 98
           Y  I   +C+    K  WE  +L ++    F  D + +   L   N       F Q L  
Sbjct: 287 YNVIINGLCREGSMKEAWE--ILEEMGYKGFTPDEVTYNTLL---NGYCKEGNFHQALVI 341

Query: 99  HY-----GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCE 150
           H      G SP +V+   L +S+ +AR    AM+F D     G  PN  +    I     
Sbjct: 342 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 401

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
            GL+ EA+   +++ E G   S+ T+N+ + G   ++R +    +  +++E G       
Sbjct: 402 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 461

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +I  FC  G++   +++ ++++E G+ P+   ++ LI   CE +      +L   M+
Sbjct: 462 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML 521

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                PD FTY  +IN  C      +A  + +++  +G++PD V Y+ +I+GL K     
Sbjct: 522 DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTR 581

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIH---------------GYCRIDNLEEAKRLHKEML 366
           +A+++ F++I++  +P++ TY+++I                G+C    + EA R+ + M+
Sbjct: 582 EAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMV 641

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++ +      YN +I G C  G   +A++L++EM   G     +T  TLI+   KEG
Sbjct: 642 ERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 698



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 167/333 (50%), Gaps = 14/333 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLI 154
           S  G  P+L+S NV+ + L    + K A + L+  G   F+P+  +    +   C+ G  
Sbjct: 276 SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 335

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            +A    +++   GV  S+ T+ + +    K    +   + +  +   G          L
Sbjct: 336 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 395

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  F   G ++E Y +L ++ E G  P    +N  I   C  +       ++  MV +  
Sbjct: 396 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 455

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           APD  +Y  +I+G C+  +   A+++  ++ E+G  PD V Y+++I GLC+M  L +A  
Sbjct: 456 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 515

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM+  GL P+E+TY ++I+ YC   +L +A  LH EM+ KG+    VTY+ LI GL 
Sbjct: 516 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 575

Query: 386 LHGRTDEAYH-LFEEMAQKGIFRDVITYNTLIQ 417
              RT EA   LF+ + ++ +  DV TY+TLI+
Sbjct: 576 KQARTREAKRLLFKLIYEESVPSDV-TYDTLIE 607


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  194 bits (492), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 173/336 (51%), Gaps = 16/336 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ S N++      A     A++ L+   S GF+P+  +    I  +  +G ++ A   
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAM-- 167

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              L+ MG   ++ T+ + +    +  + +   KL  ++ E G          L+ A C 
Sbjct: 168 -DHLRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              V    +++++++E G  P    FN L+  FC++ N     +LL  MVA+   P+  T
Sbjct: 227 LSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVT 286

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCKS+K LEA  V  ++K RG  PD   Y+ +IHGLCK   + +A +M   M 
Sbjct: 287 YSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMA 346

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+   Y+S+IH +C+   L EA++  +EM  +      VTYNT+I GLC  G+  
Sbjct: 347 GSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIA 406

Query: 392 EAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKIV 426
           EA  + E+M + G +  DV+TY+T+I G CK   +V
Sbjct: 407 EAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLV 442



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 169/338 (50%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ NVL D+L +      A D +      GF+PN  +    +   C+ G +++A
Sbjct: 209 GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDA 268

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G+  ++ T+++ + G  K  +     ++  ++   G          LI  
Sbjct: 269 RKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHG 328

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K+ E  ++LR++   G  P+   ++ +I  FC+        + L  M  + ++PD
Sbjct: 329 LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 388

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMW 327
             TY  VI+GLCK  K  EA  +   ++E G V PD V Y+TVI+GLCK   L +A+K+ 
Sbjct: 389 VVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 448

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  P+  TY ++I G C+   LEEA+ L + M   G     VTY TLI+GLC  
Sbjct: 449 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 508

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + DEA  + EEM   G   +++TYNT++ G C  G+I
Sbjct: 509 RKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRI 546



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/333 (30%), Positives = 161/333 (48%), Gaps = 15/333 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++++ N L D   +      A   L    + G  PN  +    I  LC+S    EA
Sbjct: 244 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 303

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++K  GV     T+++ + G  K D+ +   ++   +  SG          +I A
Sbjct: 304 KEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 363

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV-ARNRAP 267
           FC  GK+ E  + L+++ +    P+   +N +I   C+         +L  M  + +  P
Sbjct: 364 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLP 423

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  VINGLCKS   +EA ++ + + + G  PD V YTT+I GLCK G L +A  + 
Sbjct: 424 DVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 483

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  PN  TY ++I G C+   ++EA+R+ +EM + G     VTYNT++ GLC+ 
Sbjct: 484 QGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS 543

Query: 388 GRTDEAYHLFEEM--AQKGIFRDVITYNTLIQG 418
           GR  EA  L + M   +     D  TY T++  
Sbjct: 544 GRIKEAQQLVQRMKDGRAECSPDAATYRTIVNA 576



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 132/260 (50%), Gaps = 12/260 (4%)

Query: 175 TWNS---ALLGCIK------IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQV 225
           +WNS    L+ C K      + R++L+     D+     +I  FCN G +    ELL ++
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
              G  P+      +I+      +     + L +M      P+  TY  +I    +++K 
Sbjct: 139 KSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCD---PNVVTYTALIAAFARAKKL 195

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            EA ++  +++ERG  P+ V Y  ++  LCK+  +G A+ +  +MI  G  PN  T+NS+
Sbjct: 196 EEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSL 255

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           + G+C+  N+++A++L   M+ KG     VTY+ LI GLC   +  EA  + EEM  +G+
Sbjct: 256 VDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGV 315

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             D  TY+ LI G CK  KI
Sbjct: 316 TPDAFTYSALIHGLCKADKI 335



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 5/194 (2%)

Query: 234 NTAF--NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           +TAF  N L+      K      +L  + +  +  PD  +Y  VI+G C +     A  +
Sbjct: 75  HTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALEL 134

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             ++K  G+ PD   +T +I  +   G L  A      M   G  PN  TY ++I  + R
Sbjct: 135 LEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM---GCDPNVVTYTALIAAFAR 191

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              LEEA +L +EM ++G     VTYN L+  LC       A  + ++M + G   +V+T
Sbjct: 192 AKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMT 251

Query: 412 YNTLIQGYCKEGKI 425
           +N+L+ G+CK G +
Sbjct: 252 FNSLVDGFCKRGNV 265



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 128/280 (45%), Gaps = 15/280 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD  + + L   L +A   + A   L     +G +P+       I   C+SG + EA
Sbjct: 314 GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEA 373

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
                ++++      + T+N+ + G  K+ +      +   + ESG           +I 
Sbjct: 374 QKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVIN 433

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C    + E  +LL ++ + G  P+   +  +I   C+         LL  M     AP
Sbjct: 434 GLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAP 493

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+GLCK+RK  EA RV  +++  G  P+ V Y T+++GLC  G + +A+++ 
Sbjct: 494 NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLV 553

Query: 328 FEMI--HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
             M        P+  TY ++++     D ++EA++L ++M
Sbjct: 554 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 593



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 17/210 (8%)

Query: 103 SPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           SPD+V+ N + D L +    A A  +     +S    P+  +    I  LC+S ++ EA 
Sbjct: 386 SPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQ 445

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
               ++ + G    + T+ + + G  K  R +    L   +  +G          LI   
Sbjct: 446 KLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGL 505

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--- 266
           C   KV E   ++ ++   G  P    +N +++  C         +L+  M    RA   
Sbjct: 506 CKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRM-KDGRAECS 564

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           PD  TY  ++N L  S    EA ++   +K
Sbjct: 565 PDAATYRTIVNALMSSDLVQEAEQLLEQMK 594



 Score = 42.7 bits (99), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 37/99 (37%)

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           W      G     +++NS++    R     EA  L +  L         +YN +I+G C 
Sbjct: 65  WAPASIPGFSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCN 124

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G    A  L EEM   G   D  T+  +I      G +
Sbjct: 125 AGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDL 163


>gi|125542792|gb|EAY88931.1| hypothetical protein OsI_10416 [Oryza sativa Indica Group]
          Length = 796

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 114/373 (30%), Positives = 180/373 (48%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P   + N L  +       K A   ++S    GF P+  +  +    LC++G ++EA
Sbjct: 273 GIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEA 332

Query: 158 FCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           F    +++ +G     + T+N+ +  C K   +    +L  ++ + G          +++
Sbjct: 333 FRLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVK 392

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C +GK+ E    L ++ E+GL P+   +N LI  +C+  N  +   L+  MV +    
Sbjct: 393 SLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKM 452

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV----------------- 310
           D FT   V+  LCK ++  +A  + +   +RG+VPD V Y TV                 
Sbjct: 453 DTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLW 512

Query: 311 ------------------IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
                             I GLC+M  L +A     E + KGL+P+E TYN +IH YC+ 
Sbjct: 513 DQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKE 572

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            +LE A R H +M++  +    VT NTL+ GLCLHG+ D+A  LFE   +KG   DVITY
Sbjct: 573 GDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVDVITY 632

Query: 413 NTLIQGYCKEGKI 425
           NTLIQ  CK G +
Sbjct: 633 NTLIQSMCKVGDV 645



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 154/344 (44%), Gaps = 19/344 (5%)

Query: 100 YGFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +G SPD V+ N L ++      L EARA    M      G +P   +    +      G 
Sbjct: 237 FGLSPDAVTYNTLLNAHCRKGMLGEARALLARMK---RDGIAPTQPTYNTLVSAFARLGW 293

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL----------YHDLIESG 203
           I++A      +   G    ++T+N   +G  +  + D  ++L            D++   
Sbjct: 294 IKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTALPDVVTYN 353

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            L+ A       S+   LL ++ + G+ P     N ++   C++         L  +   
Sbjct: 354 TLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEE 413

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             APD  TY  +I+  CK+    +A+ + +++  +G   DT    TV++ LCKM    DA
Sbjct: 414 GLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDA 473

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++      +G +P+E +Y +++  Y +  N E A RL  +M+++    +  TYNTLI G
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           LC   R  EA     E  +KG+  D  TYN +I  YCKEG + N
Sbjct: 534 LCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHAYCKEGDLEN 577



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 1/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C+ G +++    L  +   GL P+   +N L++  C K   G    LL  M    
Sbjct: 214 LVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDG 273

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP   TY  +++   +     +A +V   +   G+ PD   Y  +  GLC+ G + +A 
Sbjct: 274 IAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAF 333

Query: 325 KMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           ++  EM   G  LP+  TYN+++    +     +A RL +EM DKG   T VT+N ++  
Sbjct: 334 RLKDEMERLGTALPDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKS 393

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC  G+ +EA    E++A++G+  DVITYNTLI  YCK G + 
Sbjct: 394 LCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVA 436



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 146/316 (46%), Gaps = 12/316 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P LV+ N++  SL +    + A+  L+     G +P+  +    I   C++G + +A
Sbjct: 379 GVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKA 438

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
           F    ++   G+     T N+ L    K+ R +   +L H         D +  G ++ A
Sbjct: 439 FTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAA 498

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +        L  Q++E  L+P  + +N LI   C  +      + L+  V +   PD
Sbjct: 499 YFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPD 558

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  CK      A+R  N + E  + PD V   T+++GLC  G L  A K++ 
Sbjct: 559 ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFE 618

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             + KG   +  TYN++I   C++ +++ A     +M  KG      TYN +++ L   G
Sbjct: 619 SWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAG 678

Query: 389 RTDEAYHLFEEMAQKG 404
           R++EA+++  ++A  G
Sbjct: 679 RSEEAHNMLHKLADSG 694



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 101/193 (52%), Gaps = 3/193 (1%)

Query: 229 GLVPENTAFNKLISRFCEKKN-FGRVS-ELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           G+ P   A N ++S      +   + S ++  +++     P+++T+  +++  C      
Sbjct: 166 GVRPSLQAANAVLSALSRSPSTLPQASLDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLA 225

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A    + ++  G  PD V Y T+++  C+ G LG+AR +   M   G+ P + TYN+++
Sbjct: 226 DALATLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKRDGIAPTQPTYNTLV 285

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI- 405
             + R+  +++A ++ + M   G+     TYN L  GLC  G+ DEA+ L +EM + G  
Sbjct: 286 SAFARLGWIKQATKVVESMTAYGFEPDLRTYNVLAMGLCQAGKVDEAFRLKDEMERLGTA 345

Query: 406 FRDVITYNTLIQG 418
             DV+TYNTL+  
Sbjct: 346 LPDVVTYNTLVDA 358



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 141/337 (41%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D  + N +  +L + + ++ A + L S    GF P+  S    +    +    E A
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPA 508

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + ++ E  +  SI T+N+ + G  +++R        ++ +E G          +I A
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNEFVEKGLVPDETTYNIIIHA 568

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G +   +    +++E+   P+    N L++  C      +  +L  + V + +  D
Sbjct: 569 YCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVD 628

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I  +CK      A   F+D++ +G  PD   Y  V+  L + G   +A  M  
Sbjct: 629 VITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLH 688

Query: 329 EMIHKGLLPNEYTYNSMIHGYC-RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           ++   G L   +    +        D  E   +   E  +K       TY   + GLC  
Sbjct: 689 KLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTG 748

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G+  EA  + +EM QKG+  D  TY TL++G  K  K
Sbjct: 749 GQLKEAKAVLDEMMQKGMPVDCSTYITLMEGLIKRQK 785



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 88/197 (44%), Gaps = 3/197 (1%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKRLE--A 288
           P +   +  +S +   +     ++LLH++  R    P       V++ L +S   L   +
Sbjct: 133 PTSPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQAS 192

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             VF  L E    P+   +  ++H  C  G L DA      M   GL P+  TYN++++ 
Sbjct: 193 LDVFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNA 252

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +CR   L EA+ L   M   G   T  TYNTL++     G   +A  + E M   G   D
Sbjct: 253 HCRKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPD 312

Query: 409 VITYNTLIQGYCKEGKI 425
           + TYN L  G C+ GK+
Sbjct: 313 LRTYNVLAMGLCQAGKV 329


>gi|297721877|ref|NP_001173302.1| Os03g0201300 [Oryza sativa Japonica Group]
 gi|108706707|gb|ABF94502.1| salt-inducible protein, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255674288|dbj|BAH92030.1| Os03g0201300 [Oryza sativa Japonica Group]
          Length = 796

 Score =  192 bits (487), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/325 (33%), Positives = 165/325 (50%), Gaps = 29/325 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D+  + R    A+  L+     G  P   +  + ++ LC+ G +EEA   
Sbjct: 347 PDVVTYNTLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGK 406

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ E G+   + T+N+                          LI A+C  G V++ + 
Sbjct: 407 LEKIAEEGLAPDVITYNT--------------------------LIDAYCKAGNVAKAFT 440

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ +++  GL  +    N ++   C+ K +    ELLH+   R   PD  +Y  V+    
Sbjct: 441 LMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYF 500

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K      A R+++ + ER  +P    Y T+I GLC+M  L +A     E++ KGL+P+E 
Sbjct: 501 KEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDET 560

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYN +IH YC+  +LE A R H +M++  +    VT NTL+ GLCLHG+ D+A  LFE  
Sbjct: 561 TYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESW 620

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            +KG   DVITYNTLIQ  CK G +
Sbjct: 621 VEKGKKVDVITYNTLIQSMCKVGDV 645



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 155/344 (45%), Gaps = 19/344 (5%)

Query: 100 YGFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +G SPD V+ N L ++      L EARA    M      G +P   +    +      G 
Sbjct: 237 FGLSPDAVTYNTLLNAHCRKGMLGEARALLARMK---RDGIAPTQPTYNTLVSAFARLGW 293

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL----------YHDLIESG 203
           I++A      +   G    ++T+N   +G  +  + D  ++L            D++   
Sbjct: 294 IKQATKVVESMTAYGFEPDLRTYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYN 353

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            L+ A       S+   LL ++ + G+ P     N ++   C++         L  +   
Sbjct: 354 TLVDACFKWRCSSDALRLLEEMRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEE 413

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             APD  TY  +I+  CK+    +A+ + +++  +G   DT    TV++ LCKM    DA
Sbjct: 414 GLAPDVITYNTLIDAYCKAGNVAKAFTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDA 473

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++      +G +P+E +Y +++  Y +  N E A RL  +M+++    +  TYNTLI G
Sbjct: 474 EELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKG 533

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           LC   R  EA     E+ +KG+  D  TYN +I  YCKEG + N
Sbjct: 534 LCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHAYCKEGDLEN 577



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 147/316 (46%), Gaps = 12/316 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P LV+ N++  SL +    + A+  L+     G +P+  +    I   C++G + +A
Sbjct: 379 GVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGNVAKA 438

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
           F    ++   G+     T N+ L    K+ R +   +L H         D +  G ++ A
Sbjct: 439 FTLMDEMVGKGLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAA 498

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +        L  Q++E  L+P  + +N LI   C  +      + L+ +V +   PD
Sbjct: 499 YFKEYNPEPALRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPD 558

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  CK      A+R  N + E  + PD V   T+++GLC  G L  A K++ 
Sbjct: 559 ETTYNIIIHAYCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFE 618

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             + KG   +  TYN++I   C++ +++ A     +M  KG      TYN +++ L   G
Sbjct: 619 SWVEKGKKVDVITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAG 678

Query: 389 RTDEAYHLFEEMAQKG 404
           R++EA+++  ++A  G
Sbjct: 679 RSEEAHNMLHKLADSG 694



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 139/302 (46%), Gaps = 26/302 (8%)

Query: 151 SGLIEEAFCAFSKLK--------------EMGVFGSIKTWNSAL-----------LGCIK 185
           S L + A  A+++L+                GV  S++  N+ L              + 
Sbjct: 135 SPLADAALSAYARLRLPHLAAQLLHSLRRRRGVRPSLQAANAVLSALSRSPSTLPQASLD 194

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           + R+ +  +L+ +      L+   C+ G +++    L  +   GL P+   +N L++  C
Sbjct: 195 VFRSLIELRLHPNHYTFNLLVHTHCSKGTLADALATLSTMQGFGLSPDAVTYNTLLNAHC 254

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
            K   G    LL  M     AP   TY  +++   +     +A +V   +   G+ PD  
Sbjct: 255 RKGMLGEARALLARMKRDGIAPTQPTYNTLVSAFARLGWIKQATKVVESMTAYGFEPDLR 314

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIH-KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            Y  +  GLC+ G + +A ++  EM      LP+  TYN+++    +     +A RL +E
Sbjct: 315 TYNVLAVGLCQAGKVDEAFRLKDEMERLSTALPDVVTYNTLVDACFKWRCSSDALRLLEE 374

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M DKG   T VT+N ++  LC  G+ +EA    E++A++G+  DVITYNTLI  YCK G 
Sbjct: 375 MRDKGVKPTLVTHNIVVKSLCKEGKLEEALGKLEKIAEEGLAPDVITYNTLIDAYCKAGN 434

Query: 425 IV 426
           + 
Sbjct: 435 VA 436



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 142/337 (42%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D  + N +  +L + + ++ A + L S    GF P+  S    +    +    E A
Sbjct: 449 GLKMDTFTLNTVLYNLCKMKRYEDAEELLHSPPQRGFVPDEVSYGTVMAAYFKEYNPEPA 508

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + ++ E  +  SI T+N+ + G  +++R        ++L+E G          +I A
Sbjct: 509 LRLWDQMIERKLIPSISTYNTLIKGLCRMERLKEAIDKLNELVEKGLVPDETTYNIIIHA 568

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G +   +    +++E+   P+    N L++  C      +  +L  + V + +  D
Sbjct: 569 YCKEGDLENAFRFHNKMVENSFKPDVVTCNTLMNGLCLHGKLDKALKLFESWVEKGKKVD 628

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I  +CK      A   F+D++ +G  PD   Y  V+  L + G   +A  M  
Sbjct: 629 VITYNTLIQSMCKVGDVDTALHFFDDMEVKGLQPDAFTYNVVLSALSEAGRSEEAHNMLH 688

Query: 329 EMIHKGLLPNEYTYNSMIHGYC-RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           ++   G L   +    +        D  E   +   E  +K       TY   + GLC  
Sbjct: 689 KLADSGKLSQSFACPLLKPSSADEADVKEHEGKPEAESSEKAQDNALETYMERLNGLCTG 748

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G+  EA  + +EM QKG+  D  TY TL++G  K  K
Sbjct: 749 GQLKEAKAVLDEMMQKGMPVDSSTYITLMEGLIKRQK 785


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  191 bits (486), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 174/337 (51%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V+ NV+ D+  +    + A D +      G  P+  +    +  LC+SG +EEA
Sbjct: 75  GCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEA 134

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F++++ +G   + ++ N+ +LG  +  + D   +++H++            G LI  
Sbjct: 135 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPDSWSYGILIDG 194

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               GK++E Y+L R++L+ G+ P    +N +I   C         EL  +M ++   P 
Sbjct: 195 LAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +I+  CK  K  EA+R+   + + G+VPD V Y+T+I GLC +  + DAR +  
Sbjct: 255 RFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +   P   T N++IHG C+   ++EA+ +   M+  G     VTYNTL+ G C  G
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +T+ A  L  +M  +G+  +V+TY  L+ G CK  ++
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 168/337 (49%), Gaps = 31/337 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LHS  G +P  V+   L   L  A +F  A +    ++  G  P+P +  + I   
Sbjct: 33  FQKLLHS--GVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVIIDAS 90

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C+ G++EEA     K+ E G    + T+N+ + G                          
Sbjct: 91  CKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDG-------------------------- 124

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V E   L  ++   G  P   + N +I   C++    +  ++ H M AR+  PD
Sbjct: 125 LCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIPPD 184

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +++Y  +I+GL K+ K  EAY++F  + + G  P  V Y  VIHG+C    L +A +++ 
Sbjct: 185 SWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFK 244

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  P+ +T+N +I  +C+   ++EA RL K M D G+    VTY+TLI+GLC   
Sbjct: 245 SMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 304

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R D+A HL E+M ++     V+T NTLI G CK G+I
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 341



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 160/349 (45%), Gaps = 32/349 (9%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFS 135
           L QQ+ +  + + F  + +     PD  S  +L D L +A     A+K+    LDS G +
Sbjct: 160 LCQQSKIDQACQVFHEMEAR-DIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDS-GIT 217

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +  + I  +C +  ++EA   F  ++  G   S  T+N                  
Sbjct: 218 PSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFN------------------ 259

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI A C  GK+ E + LL+++ +DG VP+   ++ LIS  C          
Sbjct: 260 --------ILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARH 311

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV R   P   T   +I+GLCK+ +  EA  V + +   G  PD V Y T++HG C
Sbjct: 312 LLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHC 371

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           + G    AR++  +M+ +GL PN  TY +++ G C+ + L EA  +  +M   G      
Sbjct: 372 RAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLF 431

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TY  LI G C  G+ D    LF EM   GI  D + Y TL    CK G+
Sbjct: 432 TYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 148/349 (42%), Gaps = 49/349 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P  V+ NV+   +  A     A++    + S G  P+  +  + I   C+ G ++EA
Sbjct: 215 GITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEA 274

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE---------SGYLIQA 208
           F    ++ + G    + T+++ + G   I R D    L  D+++            LI  
Sbjct: 275 FRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHG 334

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E  E+L  ++  G  P+   +N L+   C      R  ELL  MVAR  AP+
Sbjct: 335 LCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPN 394

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLCK+ +  EA  VF  +K  G  P+   YT +I G C  G +    K++ 
Sbjct: 395 VVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFG 454

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE---------------------MLD 367
           EM+  G+ P+   Y ++    C+      A  + +E                     +LD
Sbjct: 455 EMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLD 514

Query: 368 KGYGETTVTY----------------NTLIAGLCLHGRTDEAYHLFEEM 400
            G  E  + +                 +L+AGLC  G+  EA  + EE+
Sbjct: 515 AGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 101/166 (60%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  RN +PD+++Y  +I+GL K+ K  +A  +F  L   G  P TV YT++IHGLC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             DAR+++ +M  +G  P+  TYN +I   C+   LEEA  L K+M++ G+    VTYNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++ GLC  GR +EA  LF EM + G   +  ++NT+I G C++ KI
Sbjct: 121 VMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKI 166



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 96/199 (48%)

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E  + P++ ++  LI    +        +L   ++     P    Y  +I+GLC +    
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  +F D+  RG  P  V Y  +I   CK G L +A  +  +MI  G +P+  TYN+++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G C+   +EEA  L  EM   G      ++NT+I GLC   + D+A  +F EM  + I 
Sbjct: 123 DGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARDIP 182

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D  +Y  LI G  K GK+
Sbjct: 183 PDSWSYGILIDGLAKAGKL 201



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 111/285 (38%), Gaps = 14/285 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + L   L        A   L+        P   +    I  LC++G I+EA
Sbjct: 285 GHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G    + T+N+ + G  +  +T+   +L  D++  G          L+  
Sbjct: 345 REVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E   +  Q+   G  P    +  LI  FC         +L   MV    +PD
Sbjct: 405 LCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKE--RGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           +  Y  +   LCKS +   A  +  + +E  R       +Y   + GL   G +  A   
Sbjct: 465 HVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLDAGKMEMALGF 524

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             +M+  G LP      S++ G C+     EA+ + +E++D  YG
Sbjct: 525 VRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAYG 569


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 183/343 (53%), Gaps = 13/343 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEAR-AFKVAMDFLDS---TGFSPNPNSLELYIQCLCES 151
           L   YGF P ++S N + D+++  + + K+A         +G SPN  +  + I+  C +
Sbjct: 157 LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTA 216

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIES 202
           G +E     F +++  G   ++ T+N+ +    K+ +    +KL           +LI  
Sbjct: 217 GNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISY 276

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C +G++ E  E+L ++ +   VP+   FN LI+ +C   NF +   L   MV 
Sbjct: 277 NVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK 336

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
              +P+  TY  +IN +CK+     A    + +++RG  P+   YTT+I G  + G+L  
Sbjct: 337 NGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQ 396

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  EM+  G  P   TYN++I+G+C +  +E+A  L +EM+++G+    V+Y+T+I+
Sbjct: 397 AYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIIS 456

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C +   ++A+ L  EM  KGI  DV TY++LIQG CK+ ++
Sbjct: 457 GFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL 499



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 175/353 (49%), Gaps = 15/353 (4%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNS 140
           N+ + + FF  +  + G  P++V+ N + D+  + R    AFK+ +  +   G +PN  S
Sbjct: 218 NLEMGLXFFGEMERN-GCLPNVVTYNTIIDAYCKLRKIGEAFKL-LRLMALKGLNPNLIS 275

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
             + I  LC  G ++E      ++ +        T+N+ + G   +        L+ +++
Sbjct: 276 YNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMV 335

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           ++G          LI + C  G ++   E L Q+ + GL P    +  LI  F ++    
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  +++  MV     P   TY  +ING C   +  +A  +  ++ ERG++PD V Y+T+I
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G C+   L  A ++  EM+ KG+ P+  TY+S+I G C+   L E   L +EML  G  
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              VTY +LI   C+ G  D+A  L +EM QKG   D++TYN LI G+ K+ +
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSR 568



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 173/353 (49%), Gaps = 27/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   L +S+ +A     AM+FLD     G  PN  +    I    + G +++A
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           +    ++ E G   +I T+N+ + G   + R +    L  ++IE G++         I  
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC + ++ + ++L  +++  G+ P+   ++ LI   C+++  G V +L   M++    PD
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPD 517

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +IN  C      +A R+ +++ ++G+ PD V Y  +I+G  K     +A+++  
Sbjct: 518 EVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLL 577

Query: 329 EMIHKGLLPNEYTYNSMI---------------HGYCRIDNLEEAKRLHKEMLDKGYGET 373
           +++++  +PNE TYN++I                G+C    + EA R+ + ML KGY   
Sbjct: 578 KLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLN 637

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              YN +I G    G  ++AY+L++EM   G     +T   L +    EGK V
Sbjct: 638 EEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEV 690



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 164/328 (50%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G +P+L+S NV+ + L      K   + L+      + P+  +    I   C  G   +A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++ + G+  ++ T+ + +    K    +   +    + + G          LI  
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + + Y+++++++E+G  P    +N LI+  C        S LL  M+ R   PD
Sbjct: 388 FSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD 447

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+G C++++  +A+++  ++  +G  PD   Y+++I GLCK   LG+   ++ 
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQ 507

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  GL P+E TY S+I+ YC   +L++A RLH EM+ KG+    VTYN LI G     
Sbjct: 508 EMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           RT EA  L  ++  +    + ITYNTLI
Sbjct: 568 RTKEAKRLLLKLLYEESVPNEITYNTLI 595


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 183/343 (53%), Gaps = 13/343 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEAR-AFKVAMDFLDS---TGFSPNPNSLELYIQCLCES 151
           L   YGF P ++S N + D+++  + + K+A         +G SPN  +  + I+  C +
Sbjct: 157 LAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTA 216

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIES 202
           G +E     F +++  G   ++ T+N+ +    K+ +    +KL           +LI  
Sbjct: 217 GNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISY 276

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C +G++ E  E+L ++ +   VP+   FN LI+ +C   NF +   L   MV 
Sbjct: 277 NVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVK 336

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
              +P+  TY  +IN +CK+     A    + +++RG  P+   YTT+I G  + G+L  
Sbjct: 337 NGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQ 396

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  EM+  G  P   TYN++I+G+C +  +E+A  L +EM+++G+    V+Y+T+I+
Sbjct: 397 AYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIIS 456

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C +   ++A+ L  EM  KGI  DV TY++LIQG CK+ ++
Sbjct: 457 GFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRL 499



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/353 (29%), Positives = 175/353 (49%), Gaps = 15/353 (4%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNS 140
           N+ + + FF  +  + G  P++V+ N + D+  + R    AFK+ +  +   G +PN  S
Sbjct: 218 NLEMGLFFFGEMERN-GCLPNVVTYNTIIDAYCKLRKIGEAFKL-LRLMALKGLNPNLIS 275

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
             + I  LC  G ++E      ++ +        T+N+ + G   +        L+ +++
Sbjct: 276 YNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMV 335

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           ++G          LI + C  G ++   E L Q+ + GL P    +  LI  F ++    
Sbjct: 336 KNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLK 395

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  +++  MV     P   TY  +ING C   +  +A  +  ++ ERG++PD V Y+T+I
Sbjct: 396 QAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTII 455

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G C+   L  A ++  EM+ KG+ P+  TY+S+I G C+   L E   L +EML  G  
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLP 515

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              VTY +LI   C+ G  D+A  L +EM QKG   D++TYN LI G+ K+ +
Sbjct: 516 PDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSR 568



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 173/353 (49%), Gaps = 27/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   L +S+ +A     AM+FLD     G  PN  +    I    + G +++A
Sbjct: 338 GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQA 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           +    ++ E G   +I T+N+ + G   + R +    L  ++IE G++         I  
Sbjct: 398 YQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISG 457

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC + ++ + ++L  +++  G+ P+   ++ LI   C+++  G V +L   M++    PD
Sbjct: 458 FCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPD 517

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +IN  C      +A R+ +++ ++G+ PD V Y  +I+G  K     +A+++  
Sbjct: 518 EVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLL 577

Query: 329 EMIHKGLLPNEYTYNSMI---------------HGYCRIDNLEEAKRLHKEMLDKGYGET 373
           +++++  +PNE TYN++I                G+C    + EA R+ + ML KGY   
Sbjct: 578 KLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLN 637

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              YN +I G    G  ++AY+L++EM   G     +T   L +    EGK V
Sbjct: 638 EEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEV 690



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 164/328 (50%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G +P+L+S NV+ + L      K   + L+      + P+  +    I   C  G   +A
Sbjct: 268 GLNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQA 327

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++ + G+  ++ T+ + +    K    +   +    + + G          LI  
Sbjct: 328 LVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDG 387

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + + Y+++++++E+G  P    +N LI+  C        S LL  M+ R   PD
Sbjct: 388 FSQQGFLKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPD 447

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+G C++++  +A+++  ++  +G  PD   Y+++I GLCK   LG+   ++ 
Sbjct: 448 VVSYSTIISGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQ 507

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  GL P+E TY S+I+ YC   +L++A RLH EM+ KG+    VTYN LI G     
Sbjct: 508 EMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQS 567

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           RT EA  L  ++  +    + ITYNTLI
Sbjct: 568 RTKEAKRLLLKLLYEESVPNEITYNTLI 595


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 183/373 (49%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P   + N L  +       K A + +++    GF P+  +  +    LC++G ++EA
Sbjct: 275 GIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEA 334

Query: 158 FCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           F    +++ + +    + T+N+ +  C K  R+     L  ++ + G          +++
Sbjct: 335 FKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVK 394

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C +G++ E    L+ + E+GL P+   +N LI  +C+ +N  +   L+  MV      
Sbjct: 395 GLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKM 454

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV----------------- 310
           D FT   ++  LCK ++  EA  +     +RG+VPD V Y TV                 
Sbjct: 455 DTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLW 514

Query: 311 ------------------IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
                             I GLC +G L +A     E++ KGL+P++ TYN +IH YC+ 
Sbjct: 515 DEMSKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKE 574

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            +LE+A + H +ML+  +    VT NTL+ GLCLHG+ ++A  LFE  A+KG   DVITY
Sbjct: 575 GDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITY 634

Query: 413 NTLIQGYCKEGKI 425
           NTLIQ  CK+G +
Sbjct: 635 NTLIQALCKDGDV 647



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 167/373 (44%), Gaps = 50/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +PD+++ N L D+  +AR    AF V MD +  +G   +  +L   +  LC+    EE
Sbjct: 416 GLAPDVITYNTLIDAYCKARNVAKAF-VLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEE 474

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD-----LIESGY----LIQ 207
           A        + G      ++ + +    K ++ +    L+ +     L  S Y    LI+
Sbjct: 475 AEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTYNTLIK 534

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK++E  + L ++++ GLVP++T +N +I  +C++ +  +  +  + M+     P
Sbjct: 535 GLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKP 594

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T   ++NGLC   K  +A ++F    E+G   D + Y T+I  LCK G +  A   +
Sbjct: 595 DVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFF 654

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG------------------ 369
            +M  +GL P+ +TYN ++         EEA+ +  ++ + G                  
Sbjct: 655 ADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEV 714

Query: 370 ------------------YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
                              G    +YN  +  LC+ G+  EA  + +EM QKG+  D  T
Sbjct: 715 KTGKDPEVKSDCESGGNAKGGDQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSST 774

Query: 412 YNTLIQGYCKEGK 424
           Y TL++G  K  K
Sbjct: 775 YITLMEGLIKRQK 787



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 117/241 (48%), Gaps = 1/241 (0%)

Query: 182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
             + + R+ +  +L+ +      L+   C+ G +++    L  +   GL P+   +N L+
Sbjct: 193 ASLDVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLL 252

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C K   G    LL  M     AP   TY  +++   +     +A  V   +   G+ 
Sbjct: 253 KAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFE 312

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKR 360
           PD   Y  +  GLC+ G + +A K+  EM H  ++ P+  TYN+++    +     +A  
Sbjct: 313 PDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALN 372

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L +EM DKG   + VT+N ++ GLC  G+ +EA    + M ++G+  DVITYNTLI  YC
Sbjct: 373 LLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYC 432

Query: 421 K 421
           K
Sbjct: 433 K 433



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/369 (23%), Positives = 155/369 (42%), Gaps = 48/369 (13%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+ N L D+  + +    A++ L+     G   +  +  + ++ LC  G +EEA  
Sbjct: 348 SPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVKSSLVTHNIVVKGLCREGQLEEALG 407

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF---------C 210
               + E G+   + T+N+ +    K       + L  +++ SG  +  F         C
Sbjct: 408 RLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLC 467

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            + +  E  ELLR   + G VP+  ++  +++ + ++        L   M  R   P  +
Sbjct: 468 KEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIY 527

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH------------------ 312
           TY  +I GLC   K  EA    N+L ++G VPD   Y  +IH                  
Sbjct: 528 TYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKM 587

Query: 313 -----------------GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
                            GLC  G L  A K++     KG   +  TYN++I   C+  ++
Sbjct: 588 LENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEKGKKVDVITYNTLIQALCKDGDV 647

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           + A     +M  +G      TYN +++ L   GR++EA ++  ++ + G   +  +Y  L
Sbjct: 648 DTALHFFADMEARGLQPDAFTYNVVLSALSEAGRSEEAQNMLHKLDESGKLSERFSY-PL 706

Query: 416 IQGYCKEGK 424
           I+   +E K
Sbjct: 707 IKSSAEEVK 715



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 100/207 (48%), Gaps = 1/207 (0%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           ++ R ++   L P +  FN L+   C K         L TM     +PD  TY  ++   
Sbjct: 196 DVFRSLIALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAH 255

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C+     EA  +   +K+ G  P    Y T++    ++GW+  A  +   M   G  P+ 
Sbjct: 256 CRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDL 315

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           +TYN +  G C+   ++EA +L  EM          VTYNTL+     + R+ +A +L E
Sbjct: 316 WTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACFKYQRSSDALNLLE 375

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EM  KG+   ++T+N +++G C+EG++
Sbjct: 376 EMRDKGVKSSLVTHNIVVKGLCREGQL 402



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/176 (30%), Positives = 79/176 (44%), Gaps = 3/176 (1%)

Query: 253 VSELLHTMVARNRA-PDNFTYEEVINGLCKSRKR--LEAYRVFNDLKERGYVPDTVMYTT 309
            ++LLH+   R    P       V++ L +S       +  VF  L      P+   +  
Sbjct: 156 AAQLLHSFRRRGHVRPSLQAANAVLSALARSPSTSPQASLDVFRSLIALRLHPNHYTFNL 215

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           ++H  C  G L DA      M   GL P+  TYN+++  +CR   L EA+ L   M  +G
Sbjct: 216 LVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLLARMKKEG 275

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              T  TYNTL++     G   +A ++ E M   G   D+ TYN L  G C+ GK+
Sbjct: 276 IAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQAGKV 331


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 108/329 (32%), Positives = 173/329 (52%), Gaps = 9/329 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G  PD    N +  +L +AR    A+D+  S     N  +  + I  LC++  + EA   
Sbjct: 89  GPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNVITWTIMIDGLCKANRLPEATTY 148

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F+K+K+ G   +  T+N  + G  K+ +    + L  ++ ESG          +I  FC 
Sbjct: 149 FAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCR 208

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             KV   Y+L RQ++E+G +P    +N L+S  C         ELL  M  R   PD F+
Sbjct: 209 QTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 268

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y+ ++ GLCK+ K   A +VF D       PD V Y+T+I GLCK G L +A K++ +M 
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR 328

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                P+  T+ +++ G C+ D L+EA+++ + M D+      +TY++LI GLC  G+  
Sbjct: 329 ENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVR 388

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +A  +F+ M  +GI  +V+TYN+LI G+C
Sbjct: 389 DAQEVFKRMIVRGIEPNVVTYNSLIHGFC 417



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 174/346 (50%), Gaps = 9/346 (2%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYI 145
           ++RFF W     GF  ++ + N LF++L+ AR        L +    G +PN  +  + I
Sbjct: 7   ALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYAVVI 66

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------DL 199
           Q LC+SG +++A     +++E G       +N  +    K   T      +       ++
Sbjct: 67  QGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYFRSMECEKNV 126

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           I    +I   C   ++ E      ++ + G VP    +N LI+ FC+     R   LL  
Sbjct: 127 ITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 186

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M     AP+  TY  VI+G C+  K   AY++F  + E G +P+ V Y T++ GLC+ G 
Sbjct: 187 MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 246

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A ++  EM  +GL P++++Y++++ G C+   ++ A ++ ++  +       V Y+T
Sbjct: 247 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYST 306

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LIAGLC  GR DEA  LFE+M +     DV+T+  L+ G CK  ++
Sbjct: 307 LIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 352



 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+ + +            A      +   G  PN  +    +  LC +GL++EA
Sbjct: 191 GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 250

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------LIESGYLIQA 208
           +    +++E G+     ++++ + G  K  + D+  K++ D         ++    LI  
Sbjct: 251 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAG 310

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E  +L  ++ E+   P+   F  L+   C+        ++L TM  RN  P+
Sbjct: 311 LCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 370

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+ +  +A  VF  +  RG  P+ V Y ++IHG C    +  A  +  
Sbjct: 371 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 430

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G LP+  TYN++I G C+     EA RL  +M  K      +TY+ LI G C   
Sbjct: 431 EMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 490

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R D A  LF++M ++ +  DV+T++TL++GYC  G +
Sbjct: 491 RIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 527



 Score =  171 bits (434), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 166/336 (49%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  PD  S + L   L +     +A+   +       P  +  Y   I  LC++G ++EA
Sbjct: 261 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEA 320

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F K++E      + T+ + + G  K DR     ++           ++I    LI  
Sbjct: 321 CKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDG 380

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V +  E+ ++++  G+ P    +N LI  FC          L+  M A    PD
Sbjct: 381 LCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD 440

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+ +  EA R+F D+K +   PD + Y+ +I G CK+  +  AR ++ 
Sbjct: 441 IITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFD 500

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ + +LP+  T+++++ GYC    +++A+RL +EM+         TY +L+ G C  G
Sbjct: 501 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVG 560

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           R  EA  + + MA++G   +V+TY  LI  +C+ GK
Sbjct: 561 RMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 596



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 145/338 (42%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L            A   M+ + +TG  P+  +    I  LC++G   EA
Sbjct: 401 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 460

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F  +K       + T++  + G  K++R D+   L+ D+++   L         ++ 
Sbjct: 461 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 520

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN G V +   LL +++     P+   +  L+  FC+         +L  M  R   P+
Sbjct: 521 YCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 580

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C++ K   AYR+  ++   G  P+ + Y ++I G C  G L +ARK+  
Sbjct: 581 VVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILE 640

Query: 329 EMIH-KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +   +    + + Y  M+ G CR   +  A  L + +   G       Y  LI GLC  
Sbjct: 641 RLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQG 700

Query: 388 GRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGK 424
               +A  + EEM      R +   Y  +IQ   +EG+
Sbjct: 701 KELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGR 738



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 125/290 (43%), Gaps = 15/290 (5%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R F  + + +  +PD+++ + L     +     +A    D        P+  +    ++ 
Sbjct: 462 RLFGDMKAKF-CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 520

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
            C +GL+++A     ++        + T+ S + G  K+ R     ++   + + G    
Sbjct: 521 YCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 580

Query: 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI AFC  GK +  Y LL +++ +G+ P    +  LI  FC   +     ++L 
Sbjct: 581 VVTYTALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILE 640

Query: 259 TMVA-RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            +    N   D F Y  +++GLC++ +   A  +   +K+ G  P   +Y  +I GLC+ 
Sbjct: 641 RLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQG 700

Query: 318 GWLGDARKMWFEM-IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
             LG A ++  EM + +   PN   Y ++I    R    EEA  L  E+L
Sbjct: 701 KELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 750


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  187 bits (476), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 175/334 (52%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ NV+ D+   A   + AM  +DS    G  P   +    ++ LC SG+ ++A+  
Sbjct: 189 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 248

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F ++ + GV   ++++   + G  ++   +   K+Y          DL+    LI  F  
Sbjct: 249 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 308

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+      LR++   GLVP+   +  +I  FC          +   MV     PD  T
Sbjct: 309 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 368

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLCK R+ L+A  + N+++ERG  PD   +TT+IHG C  G L  A +++  M+
Sbjct: 369 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 428

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           ++ L P+  TYN++I G CR  +L++A  L  +M  +      VTY+ LI   C  G+ +
Sbjct: 429 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 488

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A+   +EM  KGI  +++TYN++I+GYC+ G +
Sbjct: 489 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNV 522



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           H G  PDLVS + L            AM +L      G  P+     + I   C +GL+ 
Sbjct: 289 HRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMS 348

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A     ++   G    + T+N+ L G  K  R      L +++ E G          LI
Sbjct: 349 DALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLI 408

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C +GK+ +  +L   +L   L P+   +N LI   C + +  + ++L   M +R   
Sbjct: 409 HGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIF 468

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P++ TY  +I+  C+  +  +A+   +++  +G +P+ + Y ++I G C+ G +   +K 
Sbjct: 469 PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 528

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+   + P+  TYN++IHGY + D + +A +L   M  +      VTYN LI G  +
Sbjct: 529 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 588

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           HG   EA  +FE+M  KGI  D  TY ++I G+   G
Sbjct: 589 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 625



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 12/283 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L + L + R    A   L+     G  P+  +    I   C  G +++A
Sbjct: 361 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 420

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVW------KLYHDLIESGYLIQA 208
              F  +    +   I T+N+ + G  +   +D+ + +W      +++ + +    LI +
Sbjct: 421 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 480

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V + +  L +++  G++P    +N +I  +C   N  +  + L  M+    +PD
Sbjct: 481 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 540

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G  K  K  +A+++ N +++    PD V Y  +I+G    G + +A  ++ 
Sbjct: 541 LITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 600

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           +M  KG+ P+ YTY SMI+G+    N +EA +LH EML +G+ 
Sbjct: 601 KMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 643



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 115/231 (49%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           ++ D++    ++ A    G       L+  ++  GL P    +N ++   C    + +  
Sbjct: 187 VFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAW 246

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           E+   M     APD  ++  +I G C+  +  EA +++ +++ RG  PD V ++ +I   
Sbjct: 247 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLF 306

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            + G +  A     EM   GL+P+   Y  +I G+CR   + +A R+  EM+  G     
Sbjct: 307 ARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDV 366

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           VTYNTL+ GLC   R  +A  L  EM ++G+  D+ T+ TLI GYC EGK+
Sbjct: 367 VTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKL 417



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 9/302 (2%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P P   +L I+   +S    EAF AF  + +  V       N+ L    +     L   
Sbjct: 83  TPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAAD 142

Query: 195 LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
            Y  +  S           ++  +C   +  +   ++ ++ +  + P+    N ++    
Sbjct: 143 AYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF 202

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              +      L+ +MV++   P   TY  V+ GLC+S    +A+ VF ++ + G  PD  
Sbjct: 203 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 262

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +T +I G C++G + +A K++ EM H+G+ P+  +++ +I  + R   ++ A    +EM
Sbjct: 263 SFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 322

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G     V Y  +I G C  G   +A  + +EM   G   DV+TYNTL+ G CKE ++
Sbjct: 323 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 382

Query: 426 VN 427
           ++
Sbjct: 383 LD 384



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 29/239 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D +        A D  D   S    PN  +  + I   CE G +E+AF  
Sbjct: 434 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 493

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             ++   G+  +I T+NS                          +I+ +C  G VS+G +
Sbjct: 494 LDEMINKGILPNIMTYNS--------------------------IIKGYCRSGNVSKGQK 527

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
            L++++ + + P+   +N LI  + ++       +LL+ M      PD  TY  +ING  
Sbjct: 528 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 587

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
                 EA  +F  +  +G  PD   Y ++I+G    G   +A ++  EM+ +G  P++
Sbjct: 588 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 646



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 93/221 (42%), Gaps = 36/221 (16%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN-DLKER 298
           L+ R   ++   R  E++ +++  +  P    ++ +I    +SRK  EA+  F   L  R
Sbjct: 58  LLLRMSRRRGACR-REIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHR 116

Query: 299 GYVP----------------------------------DTVMYTTVIHGLCKMGWLGDAR 324
             +P                                  +T     ++H  CK        
Sbjct: 117 VPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVD 176

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM  + + P+  T+N M+    R  + E A  L   M+ KG     VTYN+++ GL
Sbjct: 177 AVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGL 236

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G  D+A+ +F+EM   G+  DV ++  LI G+C+ G+I
Sbjct: 237 CRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEI 277


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 104/334 (31%), Positives = 175/334 (52%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ NV+ D+   A   + AM  +DS    G  P   +    ++ LC SG+ ++A+  
Sbjct: 128 PDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEV 187

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F ++ + GV   ++++   + G  ++   +   K+Y          DL+    LI  F  
Sbjct: 188 FKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFAR 247

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+      LR++   GLVP+   +  +I  FC          +   MV     PD  T
Sbjct: 248 RGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVT 307

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLCK R+ L+A  + N+++ERG  PD   +TT+IHG C  G L  A +++  M+
Sbjct: 308 YNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTML 367

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           ++ L P+  TYN++I G CR  +L++A  L  +M  +      VTY+ LI   C  G+ +
Sbjct: 368 NQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVE 427

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A+   +EM  KGI  +++TYN++I+GYC+ G +
Sbjct: 428 DAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNV 461



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           H G  PDLVS + L            AM +L      G  P+     + I   C +GL+ 
Sbjct: 228 HRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMS 287

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A     ++   G    + T+N+ L G  K  R      L +++ E G          LI
Sbjct: 288 DALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLI 347

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C +GK+ +  +L   +L   L P+   +N LI   C + +  + ++L   M +R   
Sbjct: 348 HGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIF 407

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P++ TY  +I+  C+  +  +A+   +++  +G +P+ + Y ++I G C+ G +   +K 
Sbjct: 408 PNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKF 467

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+   + P+  TYN++IHGY + D + +A +L   M  +      VTYN LI G  +
Sbjct: 468 LQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSV 527

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           HG   EA  +FE+M  KGI  D  TY ++I G+   G
Sbjct: 528 HGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 564



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 121/248 (48%), Gaps = 6/248 (2%)

Query: 184 IKIDRTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           ++ D+ D V        ++ D++    ++ A    G       L+  ++  GL P    +
Sbjct: 109 LEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTY 168

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N ++   C    + +  E+   M     APD  ++  +I G C+  +  EA +++ +++ 
Sbjct: 169 NSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRH 228

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG  PD V ++ +I    + G +  A     EM   GL+P+   Y  +I G+CR   + +
Sbjct: 229 RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSD 288

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A R+  EM+  G     VTYNTL+ GLC   R  +A  L  EM ++G+  D+ T+ TLI 
Sbjct: 289 ALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIH 348

Query: 418 GYCKEGKI 425
           GYC EGK+
Sbjct: 349 GYCIEGKL 356



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 139/281 (49%), Gaps = 12/281 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L + L + R    A   L+     G  P+  +    I   C  G +++A
Sbjct: 300 GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 359

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVW------KLYHDLIESGYLIQA 208
              F  +    +   I T+N+ + G  +   +D+ + +W      +++ + +    LI +
Sbjct: 360 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 419

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V + +  L +++  G++P    +N +I  +C   N  +  + L  M+    +PD
Sbjct: 420 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 479

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G  K  K  +A+++ N +++    PD V Y  +I+G    G + +A  ++ 
Sbjct: 480 LITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 539

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +M  KG+ P+ YTY SMI+G+    N +EA +LH EML +G
Sbjct: 540 KMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 139/302 (46%), Gaps = 9/302 (2%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P P   +L I+   +S    EAF AF  + +  V       N+ L    +     L   
Sbjct: 22  TPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALSRAGWPHLAAD 81

Query: 195 LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
            Y  +  S           ++  +C   +  +   ++ ++ +  + P+    N ++    
Sbjct: 82  AYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARF 141

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              +      L+ +MV++   P   TY  V+ GLC+S    +A+ VF ++ + G  PD  
Sbjct: 142 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 201

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +T +I G C++G + +A K++ EM H+G+ P+  +++ +I  + R   ++ A    +EM
Sbjct: 202 SFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 261

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G     V Y  +I G C  G   +A  + +EM   G   DV+TYNTL+ G CKE ++
Sbjct: 262 RCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRL 321

Query: 426 VN 427
           ++
Sbjct: 322 LD 323



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 87/206 (42%), Gaps = 35/206 (16%)

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN-DLKERGYVP----------- 302
           E++ +++  +  P    ++ +I    +SRK  EA+  F   L  R  +P           
Sbjct: 11  EIVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAAL 70

Query: 303 -----------------------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
                                  +T     ++H  CK         +  EM  + + P+ 
Sbjct: 71  SRAGWPHLAADAYRLVFSSNSEVNTYTLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDV 130

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T+N M+    R  + E A  L   M+ KG     VTYN+++ GLC  G  D+A+ +F+E
Sbjct: 131 VTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKE 190

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M   G+  DV ++  LI G+C+ G+I
Sbjct: 191 MDDFGVAPDVRSFTILIGGFCRVGEI 216


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  187 bits (475), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 166/339 (48%), Gaps = 28/339 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           ++   + + S  GF+PD  +   +  ++  A     AMD L S G  PN  +    I   
Sbjct: 9   ALELLEEMKSA-GFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAF 67

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
             +  +EEA     +++E G   ++ T+N                           L+ A
Sbjct: 68  ARAKKLEEAMKLLEEMRERGCPPNLVTYN--------------------------VLVDA 101

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    V    +++++++E G  P    FN L+  FC++ N     +LL  MVA+   P+
Sbjct: 102 LCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPN 161

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCKS+K LEA  V  ++K  G  PD   Y+ +IHGLCK   + +A +M  
Sbjct: 162 VVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLR 221

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  P+   Y+S+IH +C+   L EA++  +EM  +      VTYNT+I GLC  G
Sbjct: 222 RMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLG 281

Query: 389 RTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKIV 426
           +  EA  + ++M + G +  DV+TY+T+I G CK   +V
Sbjct: 282 KIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLV 320



 Score =  185 bits (469), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 171/338 (50%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ NVL D+L +      A D +      GF+PN  +    +   C+ G +++A
Sbjct: 87  GCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDA 146

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G+  ++ T+++ + G  K  +     ++  ++  SG          LI  
Sbjct: 147 RKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHG 206

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K+ E  ++LR++   G  P+   ++ +I  FC+        + L  M  + ++PD
Sbjct: 207 LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPD 266

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMW 327
             TY  VI+GLCK  K  EA  + + ++E G V PD V Y+TVI+GLCK   L +A+K+ 
Sbjct: 267 VVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLL 326

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  P+  TY ++I G C+   LEEA+ L + M   G     VTY TLI+GLC  
Sbjct: 327 DRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKA 386

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + DEA  + EEM   G   +++TYNT++ G C  G+I
Sbjct: 387 RKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRI 424



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 161/331 (48%), Gaps = 15/331 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++++ N L D   +      A   L    + G  PN  +    I  LC+S    EA
Sbjct: 122 GFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEA 181

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++K  GV     T+++ + G  K D+ +   ++   +  SG          +I A
Sbjct: 182 KEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHA 241

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV-ARNRAP 267
           FC  GK+ E  + L+++ +    P+   +N +I   C+         +L  M  + +  P
Sbjct: 242 FCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLP 301

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  VINGLCKS   +EA ++ + + + G  PD V YTT+I GLCK G L +A  + 
Sbjct: 302 DVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLL 361

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  PN  TY ++I G C+   ++EA+R+ +EM + G     VTYNT++ GLC+ 
Sbjct: 362 QGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVS 421

Query: 388 GRTDEAYHLFEEM--AQKGIFRDVITYNTLI 416
           GR  EA  L + M   +     D  TY T++
Sbjct: 422 GRIKEAQQLVQRMKDGRAECSPDAATYRTIV 452



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/216 (31%), Positives = 113/216 (52%), Gaps = 3/216 (1%)

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           CN G +    ELL ++   G  P+      +I+      N G +   +  + +    P+ 
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAM---ANAGDLDGAMDHLRSMGCDPNV 57

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I    +++K  EA ++  +++ERG  P+ V Y  ++  LCK+  +G A+ +  +
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKK 117

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           MI  G  PN  T+NS++ G+C+  N+++A++L   M+ KG     VTY+ LI GLC   +
Sbjct: 118 MIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQK 177

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  + EEM   G+  D  TY+ LI G CK  KI
Sbjct: 178 FLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKI 213



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 128/280 (45%), Gaps = 15/280 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD  + + L   L +A   + A   L     +G +P+       I   C+SG + EA
Sbjct: 192 GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEA 251

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
                ++++      + T+N+ + G  K+ +      +   + ESG           +I 
Sbjct: 252 QKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVIN 311

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C    + E  +LL ++ + G  P+   +  +I   C+         LL  M     AP
Sbjct: 312 GLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAP 371

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+GLCK+RK  EA RV  +++  G  P+ V Y T+++GLC  G + +A+++ 
Sbjct: 372 NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLV 431

Query: 328 FEMI--HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
             M        P+  TY ++++     D ++EA++L ++M
Sbjct: 432 QRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 173/337 (51%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V+ NV+ D+  +    + A D +      G  P+  +    +  LC+S  +EEA
Sbjct: 75  GCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEA 134

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F++++ +G   + ++ N+ +LG  +  + D   +++H++            G LI  
Sbjct: 135 LLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPDSWSYGILIDG 194

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               GK++E Y+L +++L+ G+ P    +N +I   C         EL  +M ++   P 
Sbjct: 195 LAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPS 254

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +I+  CK  K  EA+R+   + + G+VPD V Y+T+I GLC +  + DAR +  
Sbjct: 255 RFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLE 314

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +   P   T N++IHG C+   ++EA+ +   M+  G     VTYNTL+ G C  G
Sbjct: 315 DMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAG 374

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +T+ A  L  +M  +G+  +V+TY  L+ G CK  ++
Sbjct: 375 QTERARELLSDMVARGLAPNVVTYTALVSGLCKANRL 411



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 167/337 (49%), Gaps = 31/337 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LHS  G +P  V+   L   L  A +F  A +    ++  G  P+P +  + I   
Sbjct: 33  FQKLLHS--GVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDAS 90

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C+ G++EEA     K+ E G    + T+N+ + G                          
Sbjct: 91  CKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDG-------------------------- 124

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E   L  ++   G  P   + N +I   C++    +  ++ H M A++  PD
Sbjct: 125 LCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIPPD 184

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +++Y  +I+GL K+ K  EAY++F  + + G  P  V Y  VIHG+C    L +A +++ 
Sbjct: 185 SWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFK 244

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  P+ +T+N +I  +C+   L+EA RL K M D G+    VTY+TLI+GLC   
Sbjct: 245 SMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 304

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R D+A HL E+M ++     V+T NTLI G CK G+I
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRI 341



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 175/393 (44%), Gaps = 38/393 (9%)

Query: 40  YTEIAKQVCKITRTKPRW----EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQW 95
           Y  +   +CK +R +       E   L   P+   ++ +     L QQ+ +  + + F  
Sbjct: 118 YNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIIL--GLCQQSKIDQACQVFHE 175

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           + +     PD  S  +L D L +A     A+K+    LDS G +P+  +  + I  +C +
Sbjct: 176 MEAK-DIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDS-GITPSAVTYNVVIHGMCLA 233

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
             ++EA   F  ++  G   S  T+N                           LI A C 
Sbjct: 234 YTLDEALELFKSMRSKGCRPSRFTFN--------------------------ILIDAHCK 267

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+ E + LL+++ +DG VP+   ++ LIS  C          LL  MV R   P   T
Sbjct: 268 RGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVT 327

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +I+GLCK+ +  EA  V + +   G  PD V Y T++HG C+ G    AR++  +M+
Sbjct: 328 QNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMV 387

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +GL PN  TY +++ G C+ + L EA  +  +M   G      TY  LI G C  G+ D
Sbjct: 388 ARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVD 447

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               LF EM   GI  D + Y TL    CK G+
Sbjct: 448 GGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 480



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 171/404 (42%), Gaps = 51/404 (12%)

Query: 46  QVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPD 105
           Q  KI +    + +    DIP  +++  +   + L +   +  + + FQ +    G +P 
Sbjct: 162 QQSKIDQACQVFHEMEAKDIPPDSWSYGILI-DGLAKAGKLNEAYKLFQRMLDS-GITPS 219

Query: 106 LVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
            V+ NV+   +  A     A++    + S G  P+  +  + I   C+ G ++EAF    
Sbjct: 220 AVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLK 279

Query: 163 KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE---------SGYLIQAFCNDG 213
           ++ + G    + T+++ + G   I R D    L  D+++            LI   C  G
Sbjct: 280 RMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAG 339

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           ++ E  E+L  ++  G  P+   +N L+   C      R  ELL  MVAR  AP+  TY 
Sbjct: 340 RIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYT 399

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +++GLCK+ +  EA  VF  +K  G  P+   YT +I G C  G +    K++ EM+  
Sbjct: 400 ALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCA 459

Query: 334 GLLPNEYTYNSMIHGYCR-------------------------------IDNLEEAKRLH 362
           G+ P+   Y ++    C+                               +D L EA ++ 
Sbjct: 460 GISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKME 519

Query: 363 ------KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
                 ++M+  G         +L+AGLC  G+  EA  + EE+
Sbjct: 520 MALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 563



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/166 (40%), Positives = 100/166 (60%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  RN +PD+++Y  +I+GL K+ K  +A  +F  L   G  P TV YT++IHGLC    
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             DAR+++ +M  +G  P+  TYN MI   C+   LEEA  L K+M++ G+    VTYNT
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++ GLC   R +EA  LF EM + G   +  ++NT+I G C++ KI
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKI 166



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/199 (31%), Positives = 95/199 (47%)

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E  + P++ ++  LI    +         L   ++     P    Y  +I+GLC +    
Sbjct: 3   ERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFD 62

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  +F D+  RG  P  V Y  +I   CK G L +A  +  +MI  G +P+  TYN+++
Sbjct: 63  DARELFADMNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVM 122

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G C+   +EEA  L  EM   G      ++NT+I GLC   + D+A  +F EM  K I 
Sbjct: 123 DGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKDIP 182

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D  +Y  LI G  K GK+
Sbjct: 183 PDSWSYGILIDGLAKAGKL 201



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 14/285 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + L   L        A   L+        P   +    I  LC++G I+EA
Sbjct: 285 GHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G    + T+N+ + G  +  +T+   +L  D++  G          L+  
Sbjct: 345 REVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E   +  Q+   G  P    +  LI  FC         +L   MV    +PD
Sbjct: 405 LCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 464

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKE--RGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           +  Y  +   LCKS +   A  +  + +E  R       +Y   + GL + G +  A   
Sbjct: 465 HVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGF 524

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             +M+  G LP      S++ G C+     EA+ + +E++D  YG
Sbjct: 525 VRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAYG 569


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/337 (31%), Positives = 174/337 (51%), Gaps = 45/337 (13%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLV 192
           +  +P   +++ Q L E+GL+ EA   F KL   GV  S+ + N  L       D     
Sbjct: 177 WGAHPLVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTA 236

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           ++++ +  E G          ++   C  GKV E + LL Q+   G VP+  +++ ++  
Sbjct: 237 FRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDG 296

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA--------------- 288
           +C+ +  G+V +L+  +  +   P+ +TY  +I+ LCK+ + +EA               
Sbjct: 297 YCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPD 356

Query: 289 --------------------YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                               Y++F+++K +  VPD V YT++IHGLC+ G + +ARK++ 
Sbjct: 357 NVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFS 416

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KGL P+E TY ++I GYC+   ++EA  LH +M++KG     VTY  L+ GLC  G
Sbjct: 417 EMLSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCG 476

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  L  EM++KG+  +V TYN LI G CK G I
Sbjct: 477 EVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNI 513



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 171/342 (50%), Gaps = 15/342 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEA-----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +YG    + SCN+    L  +      AF+V  ++    G   N  S  + +  LC+ G 
Sbjct: 209 NYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFREY-SEVGVCWNTVSYNIILHLLCQLGK 267

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           ++EA     +++  G    + +++  + G  ++++   V KL  +L   G          
Sbjct: 268 VKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNS 327

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C  G+V E  ++LR +    + P+N  +  LIS F +  N     +L   M  + 
Sbjct: 328 IISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKK 387

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +I+GLC++ K +EA ++F+++  +G  PD V YT +I G CK G + +A 
Sbjct: 388 IVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAGEMKEAF 447

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M+ KGL PN  TY +++ G C+   ++ A  L  EM +KG      TYN LI GL
Sbjct: 448 SLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGL 507

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G  ++A  L EEM   G F D ITY T++  YCK G++ 
Sbjct: 508 CKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMA 549



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 177/389 (45%), Gaps = 54/389 (13%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF-KVA--MDFLDSTGFSP 136
           +K+ +++L+ + F        G  PD+VS +V+ D   +     KV   M+ L   G  P
Sbjct: 268 VKEAHSLLIQMEF-------RGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKP 320

Query: 137 NPNSLELYIQCLCESGLIEEA-----------------------------------FCAF 161
           N  +    I  LC++G + EA                                   +  F
Sbjct: 321 NQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLF 380

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
            ++K   +     T+ S + G  +  +     KL+ +++  G          LI  +C  
Sbjct: 381 DEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKA 440

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G++ E + L  Q++E GL P    +  L+   C+       +ELLH M  +   P+  TY
Sbjct: 441 GEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTY 500

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +INGLCK     +A ++  ++   G+ PDT+ YTT++   CKMG +  A ++   M+ 
Sbjct: 501 NALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLD 560

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KGL P   T+N +++G+C    LE+ +RL K MLDKG      T+N+L+   C+      
Sbjct: 561 KGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRA 620

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +++ M  +G+  D  TYN LI+G+CK
Sbjct: 621 TIEIYKGMHAQGVVPDTNTYNILIKGHCK 649



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/406 (24%), Positives = 186/406 (45%), Gaps = 19/406 (4%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK---QQNNVLLSI 90
           K +Q  Y  I   +CK  R     EQ L        F D + +   +    +  NV +  
Sbjct: 319 KPNQYTYNSIISFLCKTGRV-VEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEY 377

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           + F  +       PD V+   +   L +A     A K+  + L S G  P+  +    I 
Sbjct: 378 KLFDEMKRK-KIVPDFVTYTSMIHGLCQAGKVVEARKLFSEML-SKGLKPDEVTYTALID 435

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
             C++G ++EAF   +++ E G+  ++ T+ + + G  K    D+  +L H++ E G   
Sbjct: 436 GYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQP 495

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI   C  G + +  +L+ ++   G  P+   +  ++  +C+     +  ELL
Sbjct: 496 NVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELL 555

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ +   P   T+  ++NG C S    +  R+   + ++G +P+   + +++   C  
Sbjct: 556 RIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIR 615

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +    +++  M  +G++P+  TYN +I G+C+  N++EA  LHKEM++KG+  T  +Y
Sbjct: 616 NNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASY 675

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           N+LI G     + +EA  LFEEM   G   +   Y+  +    +EG
Sbjct: 676 NSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEG 721



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 153/340 (45%), Gaps = 13/340 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
           L Q   V+ + + F  + S  G  PD V+   L D   +A   K A      +   G +P
Sbjct: 402 LCQAGKVVEARKLFSEMLSK-GLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTP 460

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  +    +  LC+ G ++ A     ++ E G+  ++ T+N+ + G  K+   +   KL 
Sbjct: 461 NVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLM 520

Query: 197 HDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
            ++  +G+         ++ A+C  G++++ +ELLR +L+ GL P    FN L++ FC  
Sbjct: 521 EEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMS 580

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                   L+  M+ +   P+  T+  ++   C          ++  +  +G VPDT  Y
Sbjct: 581 GMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTY 640

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             +I G CK   + +A  +  EM+ KG      +YNS+I G+ +    EEA++L +EM  
Sbjct: 641 NILIKGHCKARNMKEAWFLHKEMVEKGFSLTAASYNSLIKGFYKRKKFEEARKLFEEMRT 700

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            G+      Y+  +      G  +    L +E  +K + +
Sbjct: 701 HGFIAEKEIYDIFVDVNYEEGNWENTLELCDEAIEKCLVK 740


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 176/350 (50%), Gaps = 13/350 (3%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQ 146
           ++F   +   +G   +    N L + LV+    K   +A   + S G  P+ ++  + I+
Sbjct: 144 LQFVDAMEVEFGVVANTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIK 203

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--- 203
            LC +  I  A     ++++ G+    KT+ + + G I+    D   ++   ++E+G   
Sbjct: 204 ALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVV 263

Query: 204 ------YLIQAFCNDGKVSEGYELLRQV-LEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                  L+  FC +G++ E    + ++ L +G  P+   FN L++   +  +     E+
Sbjct: 264 TNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEV 323

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+     PD +TY  +I+GLCK  +  EA +V N + ER   P+TV Y T+I  LCK
Sbjct: 324 MDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCK 383

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A K+   +  KG+LP+  TYNS+I G C   N   A  L+KEM  KG      T
Sbjct: 384 ENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFT 443

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YN LI  LC  G+  EA +L +EM   G  R+VITYNTLI G+CK  +I 
Sbjct: 444 YNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIA 493



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 161/340 (47%), Gaps = 29/340 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++RF + +    GF PD  + N+L + L +    K A++ +D     GF P+  +    I
Sbjct: 284 ALRFIEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLI 343

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             LC+ G ++EA    +++ E     +  T+N+                          +
Sbjct: 344 SGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNT--------------------------I 377

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C + +V E  +L   +   G++P+   +N LI   C  +N     EL   M  +  
Sbjct: 378 ISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGC 437

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FTY  +I+ LC   K  EA  +  +++  G   + + Y T+I G CK   + +A +
Sbjct: 438 HPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEE 497

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M  +G+  N  TYN++I G C+ + +EEA +L  +M+ +G      TYN+L+   C
Sbjct: 498 IFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFC 557

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G   +A  + + MA  G   D++TY TLI G CK G++
Sbjct: 558 KAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRV 597



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 174/395 (44%), Gaps = 54/395 (13%)

Query: 85  NVLLS---IRFFQWLHSHY---GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFS 135
           NVL+    ++  +  HS+    G  PD+ + N+L  +L  A   + A   M+ ++  G  
Sbjct: 168 NVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLL 227

Query: 136 PNPNSLELYIQCLCESGLIEEA-------------------------FCAFSKLKEM--- 167
           P+  +    +Q   E G ++ A                         FC   +++E    
Sbjct: 228 PDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRF 287

Query: 168 --------GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
                   G F    T+N  + G  K        ++   ++  G+         LI   C
Sbjct: 288 IEEMSLREGFFPDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLC 347

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+V E  ++L Q++E    P    +N +IS  C++      ++L   +  +   PD  
Sbjct: 348 KLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVC 407

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I GLC SR    A  ++ ++K +G  PD   Y  +I  LC  G L +A  +  EM
Sbjct: 408 TYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEM 467

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G   N  TYN++I G+C+   + EA+ +  +M  +G    +VTYNTLI GLC   R 
Sbjct: 468 EVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERV 527

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EA  L ++M  +G+  D  TYN+L+  +CK G I
Sbjct: 528 EEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDI 562



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 153/336 (45%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+ + N L   L +      A+  L+       SPN  +    I  LC+   +EEA
Sbjct: 331 GFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEA 390

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 L   G+   + T+NS + G C+  + T +  +LY ++   G          LI 
Sbjct: 391 TKLALVLTGKGILPDVCTYNSLIQGLCLSRNHT-VAMELYKEMKTKGCHPDEFTYNMLID 449

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C  GK+ E   LL+++   G       +N LI  FC+ K      E+   M  +  + 
Sbjct: 450 SLCFRGKLQEALNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSR 509

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           ++ TY  +I+GLCKS +  EA ++ + +   G  PD   Y +++   CK G +  A  + 
Sbjct: 510 NSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIV 569

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  P+  TY ++I G C+   +E A +L + +  KG   T   YN +I  L   
Sbjct: 570 QTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRR 629

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            R+ EA  LF EM +K    D +TY  + +G C+ G
Sbjct: 630 KRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGG 665



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 153/337 (45%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L   L  +R   VAM+    + + G  P+  +  + I  LC  G ++EA
Sbjct: 401 GILPDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEA 460

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++  G   ++ T+N+ + G  K  R     +++  +   G          LI  
Sbjct: 461 LNLLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDG 520

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E  +L+ Q++ +GL P+   +N L++ FC+  +  + ++++ TM +    PD
Sbjct: 521 LCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPD 580

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I GLCK+ +   A ++   ++ +G       Y  VI  L +     +A +++ 
Sbjct: 581 IVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFR 640

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           EMI K   P+  TY  +  G C+    + EA     EML++GY     ++  L  GL   
Sbjct: 641 EMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSL 700

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                   L + + +K  F D     T+I+G+ K  K
Sbjct: 701 AMVGTLIKLIDMVMEKAKFSD--NEVTMIRGFLKISK 735



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 132/309 (42%), Gaps = 29/309 (9%)

Query: 68  FNFN---DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           F +N   D L FR  L++  N+L  +          G + ++++ N L D   + +    
Sbjct: 442 FTYNMLIDSLCFRGKLQEALNLLKEMEV-------SGCARNVITYNTLIDGFCKNKRIAE 494

Query: 125 AMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL- 180
           A +  D     G S N  +    I  LC+S  +EEA     ++   G+     T+NS L 
Sbjct: 495 AEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSLLT 554

Query: 181 ----LGCIKIDRTDLVWKLYHD-----LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV 231
                G IK    D+V  +  D     ++  G LI   C  G+V    +LLR +   G+ 
Sbjct: 555 YFCKAGDIK-KAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGIN 613

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL-EAYR 290
               A+N +I     +K       L   M+ +  APD  TY+ V  GLC+    + EA  
Sbjct: 614 LTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAVD 673

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-NEYTYNSMIHGY 349
              ++ ERGYVP+   +  +  GL  +  +G   K+   ++ K     NE T   MI G+
Sbjct: 674 FVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKAKFSDNEVT---MIRGF 730

Query: 350 CRIDNLEEA 358
            +I   ++A
Sbjct: 731 LKISKYQDA 739



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 27/217 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N L     +A   K A D +    S G  P+  +    I  LC++G +E A
Sbjct: 541 GLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAA 600

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 ++  G+  +   +N  +    +  R+    +L+ ++IE            + + 
Sbjct: 601 TKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRG 660

Query: 209 FCNDG-KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            C  G  + E  + + ++LE G VPE ++F  L          G + +L+  ++ + +  
Sbjct: 661 LCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKAKFS 720

Query: 268 DN-----------FTYEEV---INGLCKSRKRLEAYR 290
           DN             Y++    + G+  SRK   AYR
Sbjct: 721 DNEVTMIRGFLKISKYQDALATLGGILDSRKPNRAYR 757


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 177/339 (52%), Gaps = 15/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEAR-----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           GF P ++S N + DS+V  R     A KV  + + ++G S N  S  + I+  C +G +E
Sbjct: 162 GFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMI-ASGVSLNVFSYNILIRGFCAAGNLE 220

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
                F +++      ++ T+N+ +    K+ R D  +KL           +L+    +I
Sbjct: 221 MGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVI 280

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G++ E   +L ++   G  P+   +N L++ +C+  NF +   L   M+     
Sbjct: 281 NGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLP 340

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +IN +CK+     A   F+ +  RG  P+ V YT++I+G  + G++ +A ++
Sbjct: 341 PDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRI 400

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           W EMI  G  P   TYN++++G+C    +EEA  L + M  KG     V+Y+T+IAG C 
Sbjct: 401 WDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCR 460

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +   D A+ +  EM +KG+  D ITY++LIQG C++ ++
Sbjct: 461 YQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRL 499



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/352 (29%), Positives = 164/352 (46%), Gaps = 13/352 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSL 141
           N+ + +RFF+ +  +    P++V+ N +  +  + +    A   L S G     PN  + 
Sbjct: 218 NLEMGLRFFEEMERNRCL-PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTY 276

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + I  LC  G IEE     +++   G      T+N+ + G  K+        L+ +++ 
Sbjct: 277 NMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLR 336

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           +G          LI   C  G ++   E   Q+   GL P    +  LI+ F +K     
Sbjct: 337 NGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDE 396

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M+     P   TY  ++NG C S +  EA  +   ++ +G  PD V Y+T+I 
Sbjct: 397 AYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIA 456

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C+   L  A +M  EM+ KG+ P+  TY+S+I G C    L EA  L +EML+K    
Sbjct: 457 GFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLP 516

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              TY +LI G C  G  +EA +L +EM +KG   D +TYN LI G  K+ +
Sbjct: 517 DEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQAR 568



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L++ N++ + L      +     L   D  GF+P+  +    +   C+ G   +A
Sbjct: 268 GLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQA 327

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               S++   G+   + T+ S +    K    +   + +  +   G          LI  
Sbjct: 328 LVLHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLING 387

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + E Y +  +++  G  P    +N L++  C          LL  M  +  +PD
Sbjct: 388 FSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPD 447

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I G C+ ++   A+++  ++ E+G  PD + Y+++I GLC+   L +A  ++ 
Sbjct: 448 VVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQ 507

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM++K LLP+E+TY S+I+GYC+  +L EA  LH EM+ KG+   TVTYN LI GL    
Sbjct: 508 EMLNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQA 567

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           RT EA  L  ++       + ITY+TLI+
Sbjct: 568 RTREAKRLLLKLFYDESIPNGITYDTLIE 596



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 175/377 (46%), Gaps = 31/377 (8%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSP--DLVSCNVLFDSLVEARAFKVAMDF-------- 128
            L+ QN+  L+++F  +   H  F+P    ++ ++L    +   A  +A D         
Sbjct: 54  LLQTQNDRTLTLKFINFAKPHQFFNPHCKCIALHILTKFKLYKTAQNLAQDLAENSVDEK 113

Query: 129 -------LDSTGFSPNPNS--LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
                  L  T F  N +S   +L ++       IE+A       K  G    + ++N A
Sbjct: 114 GNYFFQCLKDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYN-A 172

Query: 180 LLGCIKIDRTDLVW--KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLED 228
           +L  I   R  +++  K+Y ++I SG          LI+ FC  G +  G     ++  +
Sbjct: 173 ILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERN 232

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
             +P    +N +I  +C+ K      +LL +M      P+  TY  VINGLC+  +  E 
Sbjct: 233 RCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEET 292

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             V  ++  +G+ PD V Y T+++G CK+G    A  +  EM+  GL P+  TY S+I+ 
Sbjct: 293 SGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINT 352

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+  NL  A     +M  +G     VTY +LI G    G  DEAY +++EM + G    
Sbjct: 353 MCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPT 412

Query: 409 VITYNTLIQGYCKEGKI 425
           ++TYN L+ G+C  G++
Sbjct: 413 IVTYNALLNGHCVSGRM 429



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 168/358 (46%), Gaps = 30/358 (8%)

Query: 96  LHSHY---GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
           LHS     G  PD+V+   L +++ +A     AM+F D     G  PN  +    I    
Sbjct: 330 LHSEMLRNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFS 389

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW--------KLYHDLI 200
           + G ++EA+  + ++   G   +I T+N+ L G C+     + +          L  D++
Sbjct: 390 QKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVV 449

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I  FC   ++   +++  +++E G+ P+   ++ LI   CE++      +L   M
Sbjct: 450 SYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEM 509

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           + ++  PD FTY  +ING CK     EA  + +++ ++G++PDTV Y  +I+GL K    
Sbjct: 510 LNKSLLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQART 569

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIH---------------GYCRIDNLEEAKRLHKEM 365
            +A+++  ++ +   +PN  TY+++I                G+C    + EA ++ + M
Sbjct: 570 REAKRLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESM 629

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + +        YN +I G C  G   +A+ L++EM   G     +T   L++    EG
Sbjct: 630 IKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSEG 687


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 119/369 (32%), Positives = 180/369 (48%), Gaps = 17/369 (4%)

Query: 73  PLFFR---EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL-VEARAFKVAMDF 128
           PL F    + L +   VL + + F  L   YG    + SCN+    L       K+A+  
Sbjct: 171 PLVFDLYFQVLVENGFVLEAQKLFHKL-LRYGVVVSVDSCNLFLSRLSCNFEGIKIAVKV 229

Query: 129 LDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
            +     G   N  S  + + CLC+ G + EA     ++ + G F  + ++   + G  +
Sbjct: 230 FEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCR 289

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           I   D V KL  +L   G          +I   C +G+V E  +LLR + + G+ P+N  
Sbjct: 290 IGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVV 349

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +  +IS FC+  N     +L   M  +   PD  TY  VI+G+CKS K +EA  +FN++ 
Sbjct: 350 YTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEML 409

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +G  PD V YT +I G CK G + +A  +  +M+ KGL PN  TY ++  G C+   ++
Sbjct: 410 VKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEID 469

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A  L  EM  KG      TYNT++ GLC  G  ++   L EEM   G + D ITY TL+
Sbjct: 470 VANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLM 529

Query: 417 QGYCKEGKI 425
             YCK G++
Sbjct: 530 DAYCKMGEM 538



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 110/335 (32%), Positives = 162/335 (48%), Gaps = 47/335 (14%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL--LGCIKIDRTDLVWK 194
           +P   +LY Q L E+G + EA   F KL   GV  S+ + N  L  L C   +   +  K
Sbjct: 170 HPLVFDLYFQVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSC-NFEGIKIAVK 228

Query: 195 LYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLE------------------ 227
           ++ +  E G          ++   C  GKV E + LL Q+ +                  
Sbjct: 229 VFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYC 288

Query: 228 -----------------DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
                             GL P+   +N +I   C+        +LL  M      PDN 
Sbjct: 289 RIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  VI+G CK      A ++F++++ +  VPD V YT+VIHG+CK G + +AR+M+ EM
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEM 408

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + KGL P+E TY ++I GYC+   ++EA  +H +M+ KG     VTY  L  GLC +G  
Sbjct: 409 LVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEI 468

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D A  L  EM++KG+  +V TYNT++ G CK G I
Sbjct: 469 DVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNI 503



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 147/298 (49%), Gaps = 9/298 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+       I   C+ G +  A   F +++   +   I T+ S + G  K  +    
Sbjct: 342 GVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEA 401

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +++++++  G          LI  +C  G++ E + +  Q+++ GL P    +  L   
Sbjct: 402 REMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADG 461

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C+       +ELLH M  +   P+ +TY  ++NGLCK     +  ++  ++   G+ PD
Sbjct: 462 LCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPD 521

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T+ YTT++   CKMG +  A ++   M++K L P   T+N +++G+C    LE+ +RL +
Sbjct: 522 TITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIE 581

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            ML+KG      T+N+L+   C+         +++ M  +G+  D  TYN LI+G+CK
Sbjct: 582 WMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCK 639



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/332 (23%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+   +   + ++     A +  +     G  P+  +    I   C++G ++EAF  
Sbjct: 380 PDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSV 439

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +++ + G+  ++ T+ +   G  K    D+  +L H++   G          ++   C 
Sbjct: 440 HNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCK 499

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G + +  +L+ ++   G  P+   +  L+  +C+     +  ELL  M+ +   P   T
Sbjct: 500 IGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVT 559

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  ++NG C S    +  R+   + E+G +P+   + +++   C    +    +++  M 
Sbjct: 560 FNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMH 619

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G++P+  TYN +I G+C+  N++EA  LHKEM++KGY  T  TY+ LI G     +  
Sbjct: 620 DRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFV 679

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EA  LFEEM + G+  +   Y+  +    +EG
Sbjct: 680 EARKLFEEMRKHGLVAEKDIYDIFVDVNYEEG 711



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/295 (26%), Positives = 127/295 (43%), Gaps = 12/295 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L D L +     VA + L      G  PN  +    +  LC+ G IE+ 
Sbjct: 447 GLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQT 506

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKID---------RTDLVWKLYHDLIESGYLIQA 208
                ++   G +    T+ + +    K+          R  L  +L   L+    L+  
Sbjct: 507 VKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNG 566

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + +G  L+  +LE G++P  T FN L+ ++C K N    +E+   M  R   PD
Sbjct: 567 FCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPD 626

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I G CK+R   EA+ +  ++ E+GY      Y  +I G  K     +ARK++ 
Sbjct: 627 SNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFE 686

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           EM   GL+  +  Y+  +       N E    L  E + +  G   V Y     G
Sbjct: 687 EMRKHGLVAEKDIYDIFVDVNYEEGNWEITLELCDEFMTELSGTIFVVYICFFIG 741



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/231 (31%), Positives = 115/231 (49%), Gaps = 2/231 (0%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF-CEKKNFGRVSE 255
           H L+   Y  Q    +G V E  +L  ++L  G+V    + N  +SR  C  +      +
Sbjct: 170 HPLVFDLYF-QVLVENGFVLEAQKLFHKLLRYGVVVSVDSCNLFLSRLSCNFEGIKIAVK 228

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +           +  +   V++ LC+  K  EA+ +   + +RG  PD V Y  V+ G C
Sbjct: 229 VFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYC 288

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           ++G L    K+  E+  KGL P+EY YN++I   C+   + EA++L + M   G     V
Sbjct: 289 RIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNV 348

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            Y T+I+G C  G    A  LF+EM +K I  D++TY ++I G CK GK+V
Sbjct: 349 VYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMV 399


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 184/383 (48%), Gaps = 47/383 (12%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQ 146
           +I  F++L ++ G  P + +C  L  SLV+A   + +    ++   G SP+       I 
Sbjct: 196 AIGVFRFL-ANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 254

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
             C+ G +E+A   F  ++++GV  ++ T+N+ + G  K    D  ++    +++ G   
Sbjct: 255 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 314

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI       K +E   +L++ LE G  P    +N LI  +C+  N G    + 
Sbjct: 315 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 374

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH----- 312
             MV++   P++ T   +I G CK  +  +A  +  ++  RG+  +   +TT+IH     
Sbjct: 375 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 434

Query: 313 ------------------------------GLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
                                         GLCK G   DA ++WF ++ KG   N  T 
Sbjct: 435 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTT 494

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N++IHG C+  N++EA RL K+ML++G+    +TYNTLI+G C  G+ +E + L  EM +
Sbjct: 495 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 554

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           +GI  D  TYN LI G C+ GK+
Sbjct: 555 QGIEPDTFTYNLLIHGMCRIGKL 577



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/378 (31%), Positives = 180/378 (47%), Gaps = 52/378 (13%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF+P+ V  N L D   +      A ++  D + S G +PN  +L   IQ  C+ G +E+
Sbjct: 346 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV-SKGINPNSVTLNSIIQGFCKIGQMEQ 404

Query: 157 AFCAFSKLKEMG------VFGSIKTW------------------------NSALL----- 181
           A C   ++   G       F +I  W                        N  LL     
Sbjct: 405 AECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVG 464

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K  +     +L+  L+E G+         LI   C  G + E   LL+++LE G V 
Sbjct: 465 GLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVL 524

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +N LIS  C++       +L   MV +   PD FTY  +I+G+C+  K  EA  ++
Sbjct: 525 DKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLW 584

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           N+ K R  VP+   Y  +I G CK   + +  K++ E++ + L  N   YN++I  YCR 
Sbjct: 585 NECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRN 644

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N  EA +LH +M  KG   TT TY++LI G+C  GR ++A  L +EM ++G+  +V+ Y
Sbjct: 645 GNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCY 704

Query: 413 NTLIQGYCKEG---KIVN 427
             LI GYCK G   K+VN
Sbjct: 705 TALIGGYCKLGQMDKVVN 722



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 150/302 (49%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF  N  +    I  LC++G ++EA     K+ E G      T+N+ + GC K  + +  
Sbjct: 486 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEG 545

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           +KL  ++++ G          LI   C  GK+ E   L  +     LVP    +  +I  
Sbjct: 546 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 605

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+        +L   ++ +N   ++  Y  +I   C++   +EA+++ +D++ +G  P 
Sbjct: 606 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 665

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T  Y+++IHG+C +G + DA+ +  EM  +GLLPN   Y ++I GYC++  +++   + +
Sbjct: 666 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQ 725

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM         +TY  +I G    G    A  L  EM  KGI  D +TYN L  G+CKEG
Sbjct: 726 EMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEG 785

Query: 424 KI 425
           KI
Sbjct: 786 KI 787



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF  +LV+ N L   L +    + A+  L      GF  +  +    I   C+ G +EE 
Sbjct: 486 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEG 545

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIES----GYLIQA 208
           F    ++ + G+     T+N  + G  +I + D    L++     DL+ +    G +I  
Sbjct: 546 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 605

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+ EG +L  ++L   L   +  +N LI  +C   N     +L   M ++   P 
Sbjct: 606 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 665

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G+C   +  +A  + +++++ G +P+ V YT +I G CK+G +     +  
Sbjct: 666 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQ 725

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    + PN+ TY  MI GY +  +++ A +L  EM+ KG    TVTYN L  G C  G
Sbjct: 726 EMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEG 785

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + +E + + + M+Q+G+  D ITY TL+ G+ +   + N
Sbjct: 786 KIEEGFKICDYMSQEGLPLDEITYTTLVHGWQQPSALTN 824



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 162/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GFS +  +   +   L     F+ A+ FL         PN   L   +  LC+ G   +A
Sbjct: 416 GFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDA 475

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + +L E G   ++ T N+ + G  K        +L   ++E G+         LI  
Sbjct: 476 VELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISG 535

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV EG++L  ++++ G+ P+   +N LI   C          L +   +R+  P+
Sbjct: 536 CCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 595

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I+G CK+ K  E  ++F +L  +    ++V+Y T+I   C+ G   +A K+  
Sbjct: 596 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHD 655

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  KG+ P   TY+S+IHG C I  +E+AK L  EM  +G     V Y  LI G C  G
Sbjct: 656 DMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 715

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D+  ++ +EM+   I  + ITY  +I GY K G +
Sbjct: 716 QMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 752


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 110/383 (28%), Positives = 184/383 (48%), Gaps = 47/383 (12%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQ 146
           +I  F++L ++ G  P + +C  L  SLV+A   + +    ++   G SP+       I 
Sbjct: 263 AIGVFRFL-ANKGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQGVSPDVYLFSTAIN 321

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
             C+ G +E+A   F  ++++GV  ++ T+N+ + G  K    D  ++    +++ G   
Sbjct: 322 AFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNA 381

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI       K +E   +L++ LE G  P    +N LI  +C+  N G    + 
Sbjct: 382 TLITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 441

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH----- 312
             MV++   P++ T   +I G CK  +  +A  +  ++  RG+  +   +TT+IH     
Sbjct: 442 GDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMN 501

Query: 313 ------------------------------GLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
                                         GLCK G   DA ++WF ++ KG   N  T 
Sbjct: 502 SRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGANLVTT 561

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N++IHG C+  N++EA RL K+ML++G+    +TYNTLI+G C  G+ +E + L  EM +
Sbjct: 562 NALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRGEMVK 621

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           +GI  D  TYN LI G C+ GK+
Sbjct: 622 QGIEPDTFTYNLLIHGMCRIGKL 644



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 120/379 (31%), Positives = 182/379 (48%), Gaps = 54/379 (14%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF+P+ V  N L D   +      A ++  D + S G +PN  +L   IQ  C+ G +E+
Sbjct: 413 GFTPNEVVYNTLIDGYCKMGNLGDALRIRGDMV-SKGINPNSVTLNSIIQGFCKIGQMEQ 471

Query: 157 AFCAFSKLKEMG------VFGSIKTW------------------------NSALLG---- 182
           A C   ++   G       F +I  W                        N  LL     
Sbjct: 472 AECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVG 531

Query: 183 --CIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
             C +   +D V +L+  L+E G+         LI   C  G + E   LL+++LE G V
Sbjct: 532 GLCKEGKHSDAV-ELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFV 590

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            +   +N LIS  C++       +L   MV +   PD FTY  +I+G+C+  K  EA  +
Sbjct: 591 LDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNL 650

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           +N+ K R  VP+   Y  +I G CK   + +  K++ E++ + L  N   YN++I  YCR
Sbjct: 651 WNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCR 710

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             N  EA +LH +M  KG   TT TY++LI G+C  GR ++A  L +EM ++G+  +V+ 
Sbjct: 711 NGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVC 770

Query: 412 YNTLIQGYCKEG---KIVN 427
           Y  LI GYCK G   K+VN
Sbjct: 771 YTALIGGYCKLGQMDKVVN 789



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 150/302 (49%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF  N  +    I  LC++G ++EA     K+ E G      T+N+ + GC K  + +  
Sbjct: 553 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEG 612

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           +KL  ++++ G          LI   C  GK+ E   L  +     LVP    +  +I  
Sbjct: 613 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 672

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+        +L   ++ +N   ++  Y  +I   C++   +EA+++ +D++ +G  P 
Sbjct: 673 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 732

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T  Y+++IHG+C +G + DA+ +  EM  +GLLPN   Y ++I GYC++  +++   + +
Sbjct: 733 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQ 792

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM         +TY  +I G    G    A  L  EM  KGI  D +TYN L  G+CKEG
Sbjct: 793 EMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEG 852

Query: 424 KI 425
           KI
Sbjct: 853 KI 854



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 162/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GFS +  +   +   L     F+ A+ FL         PN   L   +  LC+ G   +A
Sbjct: 483 GFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDA 542

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + +L E G   ++ T N+ + G  K        +L   ++E G+         LI  
Sbjct: 543 VELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISG 602

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV EG++L  ++++ G+ P+   +N LI   C          L +   +R+  P+
Sbjct: 603 CCKEGKVEEGFKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPN 662

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I+G CK+ K  E  ++F +L  +    ++V+Y T+I   C+ G   +A K+  
Sbjct: 663 VYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHD 722

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  KG+ P   TY+S+IHG C I  +E+AK L  EM  +G     V Y  LI G C  G
Sbjct: 723 DMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLG 782

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D+  ++ +EM+   I  + ITY  +I GY K G +
Sbjct: 783 QMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSGDM 819



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 148/311 (47%), Gaps = 12/311 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF  +LV+ N L   L +    + A+  L      GF  +  +    I   C+ G +EE 
Sbjct: 553 GFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEG 612

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIES----GYLIQA 208
           F    ++ + G+     T+N  + G  +I + D    L++     DL+ +    G +I  
Sbjct: 613 FKLRGEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDG 672

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+ EG +L  ++L   L   +  +N LI  +C   N     +L   M ++   P 
Sbjct: 673 YCKADKIEEGEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPT 732

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G+C   +  +A  + +++++ G +P+ V YT +I G CK+G +     +  
Sbjct: 733 TATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQ 792

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    + PN+ TY  MI GY +  +++ A +L  EM+ KG    TVTYN L  G C  G
Sbjct: 793 EMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEG 852

Query: 389 RTDEAYHLFEE 399
           + +E   L E+
Sbjct: 853 KIEEGKLLAED 863


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 178/377 (47%), Gaps = 47/377 (12%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESG 152
           L +  G  P L +C  L  SLV+A   K +    DF+   G  P+ +     I   C+  
Sbjct: 211 LLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGH 270

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI------------ 200
             ++A   FSK++++GV  ++ T+N+ + G  K  R D  ++    ++            
Sbjct: 271 REDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYS 330

Query: 201 -----------------------ESGY---------LIQAFCNDGKVSEGYELLRQVLED 228
                                  E G+         LI  +C  G +SE  ++   +L  
Sbjct: 331 VFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSK 390

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+ P +   N LI  FC+    G+   +L  M+ R    +  ++  VIN LC   + + A
Sbjct: 391 GISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTA 450

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                ++  R   P+  + TT++ GLCK G  G+A ++W  ++ KG +PN  T N++IHG
Sbjct: 451 LHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHG 510

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+  N++E  +L ++ML++G     +TYNTLI+G C  G+  E + L EEM +KGI  D
Sbjct: 511 LCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPD 570

Query: 409 VITYNTLIQGYCKEGKI 425
           + T+N L+ G C   KI
Sbjct: 571 IYTFNLLLHGLCNADKI 587



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 153/334 (45%), Gaps = 44/334 (13%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN   L   +  LC++G   EA   + +L   G   +I T N+ + G  K        KL
Sbjct: 464 PNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKL 523

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             D++E G          LI   C +GKV EG+EL  ++++ G+ P+   FN L+   C 
Sbjct: 524 LRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCN 583

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK--------------RLE----- 287
                  S L H        P+ +TY  +I+G CK+ K              +LE     
Sbjct: 584 ADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVV 643

Query: 288 ----------------AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
                           A+R+ +D+K RG +     Y++++HGLC +G + DA+ +  EM 
Sbjct: 644 YNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMR 703

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +GLLPN   Y ++I GY ++  + +   + +EM          TY  +I G C  G+T 
Sbjct: 704 KEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTK 763

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  L  EM +KGI  D +TYN    G CKEGK+
Sbjct: 764 EAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKV 797



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/379 (31%), Positives = 177/379 (46%), Gaps = 55/379 (14%)

Query: 98  SHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S  GF P+ V  N L D   +    + A K+  D L S G SPN  +L   IQ  C+S  
Sbjct: 353 SELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDML-SKGISPNSVTLNSLIQGFCKSDQ 411

Query: 154 IEEAFCAFSKLKEM---------GVFGSIKTW------------------------NSAL 180
           I +A    + L+EM         G F  +  W                        N  L
Sbjct: 412 IGQAE---NVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGL 468

Query: 181 L-----GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVL 226
           L     G  K  +     +L+  L+  G+         LI   C  G + E  +LLR +L
Sbjct: 469 LTTLVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDML 528

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E GLV +   +N LIS  C++       EL   MV +   PD +T+  +++GLC + K  
Sbjct: 529 ERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKID 588

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA R++++ K+ GYVP+   Y  +I G CK   + +   +  E++ K L  N   YNS+I
Sbjct: 589 EASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLI 648

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
             YC   N+  A RL  +M  +G   +  TY++L+ GLC  G  D+A HL +EM ++G+ 
Sbjct: 649 RAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLL 708

Query: 407 RDVITYNTLIQGYCKEGKI 425
            +V+ Y T+I GY K G++
Sbjct: 709 PNVVCYTTIIGGYSKLGQM 727



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 162/331 (48%), Gaps = 14/331 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF P++V+ N L   L +A       K+  D L+  G   +  +    I   C+ G ++E
Sbjct: 496 GFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLER-GLVFDRITYNTLISGCCKEGKVKE 554

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F    ++ + G+   I T+N  L G    D+ D   +L+H+  ++GY         +I 
Sbjct: 555 GFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMID 614

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C   KV EG  LL +++   L   +  +N LI  +C   N      L   M +R    
Sbjct: 615 GYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLL 674

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +++GLC      +A  + +++++ G +P+ V YTT+I G  K+G +     + 
Sbjct: 675 SCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVL 734

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM    + PN++TY  MI G+C++   +EA +L  EM +KG     VTYN    GLC  
Sbjct: 735 QEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKE 794

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           G+ +EA+ + +EM+   +  D ITY TLI G
Sbjct: 795 GKVEEAFKVCDEMSSGAVCLDEITYTTLIDG 825



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 133/274 (48%), Gaps = 9/274 (3%)

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            FS L + G+F S+KT    L   +K +     +++Y  +   G          +I AFC
Sbjct: 208 VFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFC 267

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              +  +   L  ++ + G+ P    +N +I   C+             MV    +P   
Sbjct: 268 KGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLI 327

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY   INGL K  K  EA  V  ++ E G+VP+ V+Y T+I G CKMG + +A K+  +M
Sbjct: 328 TYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDM 387

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + KG+ PN  T NS+I G+C+ D + +A+ + +EM+ +G      +++ +I  LCL  R 
Sbjct: 388 LSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRF 447

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             A H   EM  + +  +     TL+ G CK GK
Sbjct: 448 VTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGK 481



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/232 (29%), Positives = 121/232 (52%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L+  L    +L+ +     ++ + YE+   +   G++P+   F+ +I+ FC+        
Sbjct: 217 LFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAI 276

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            L   M     AP+  TY  +I+GLCKS +  EAYR    + +    P  + Y+  I+GL
Sbjct: 277 GLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGL 336

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K+  + +A  +  EM   G +PNE  YN++I GYC++ N+ EA ++  +ML KG    +
Sbjct: 337 IKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGISPNS 396

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           VT N+LI G C   +  +A ++ EEM  +G+  +  +++ +I   C + + V
Sbjct: 397 VTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFV 448



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/176 (31%), Positives = 98/176 (55%)

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
           FG  +++   +  +   P   T   +++ L K+ +  ++Y V++ +   G +PD  +++T
Sbjct: 202 FGFAADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFST 261

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+  CK     DA  ++ +M   G+ PN  TYN++IHG C+   L+EA R  ++M+ + 
Sbjct: 262 MINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEK 321

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + +TY+  I GL    + DEA  + +EM++ G   + + YNTLI GYCK G I
Sbjct: 322 VSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNI 377


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 160/296 (54%), Gaps = 9/296 (3%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           SPN  +  + I+  C  G +++    F +++  G   ++ T+N+ +    K+ R D  + 
Sbjct: 7   SPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFG 66

Query: 195 LYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           L           +LI    +I   C +G + E +E+L ++   G  P+   +N L++ +C
Sbjct: 67  LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 126

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           ++ NF +   +   MV    +P   TY  +IN +CK+R    A   F+ ++ RG  P+  
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            YTT+I G  + G L +A ++  EM   G  P+  TYN+ IHG+C ++ +EEA  + +EM
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM 246

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++KG     V+Y+T+I+G C  G  D A+ + +EM +KG+  D +TY++LIQG C+
Sbjct: 247 VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCE 302



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 165/335 (49%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP++ + N+L   F S+ E +        ++  G  PN  +    I   C+ G I+EAF 
Sbjct: 7   SPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGRIDEAFG 66

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
               +   G+  ++ ++N  + G  +       W++  ++   G+         L+  +C
Sbjct: 67  LLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYC 126

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +G   +   +  +++ +G+ P    +  LI+  C+ +N  R  E    M  R   P+  
Sbjct: 127 KEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNER 186

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+G  +     EAYR+ N++ E G+ P  V Y   IHG C +  + +A  +  EM
Sbjct: 187 TYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEM 246

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + KGL P+  +Y+++I G+CR   L+ A ++ +EM++KG     VTY++LI GLC   R 
Sbjct: 247 VEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRL 306

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA  L +EM   G+  D  TY TLI  YC EG +
Sbjct: 307 TEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDL 341



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 106/417 (25%), Positives = 195/417 (46%), Gaps = 38/417 (9%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRFFQWLHS 98
           Y  I   +C+    K  WE  +L ++    F  D + +   L   N       F Q L  
Sbjct: 83  YNVIINGLCREGSMKEAWE--ILEEMGYKGFTPDEVTYNTLL---NGYCKEGNFHQALVI 137

Query: 99  HY-----GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCE 150
           H      G SP +V+   L +S+ +AR    AM+F D     G  PN  +    I     
Sbjct: 138 HAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSR 197

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
            GL+ EA+   +++ E G   S+ T+N+ + G   ++R +    +  +++E G       
Sbjct: 198 QGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVS 257

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +I  FC  G++   +++ ++++E G+ P+   ++ LI   CE +      +L   M+
Sbjct: 258 YSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEML 317

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                PD FTY  +IN  C      +A  + +++  +G++PD V Y+ +I+GL K     
Sbjct: 318 DMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQARTR 377

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIH---------------GYCRIDNLEEAKRLHKEML 366
           +A+++ F++I++  +P++ TY+++I                G+C    + EA R+ + M+
Sbjct: 378 EAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFESMV 437

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++ +      YN +I G C  G   +A++L++EM   G     +T  TLI+   KEG
Sbjct: 438 ERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 494



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 155/336 (46%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L D+  +      A   L    S G  PN  S  + I  LC  G ++EA
Sbjct: 40  GCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEA 99

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +    ++   G      T+N+ L G  K         ++ +++ +G          LI +
Sbjct: 100 WEILEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINS 159

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    ++   E   Q+   GL P    +  LI  F  +        +L+ M     +P 
Sbjct: 160 MCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPS 219

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY   I+G C   +  EA  V  ++ E+G  PD V Y+T+I G C+ G L  A +M  
Sbjct: 220 VVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQ 279

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG+ P+  TY+S+I G C +  L EA  L +EMLD G      TY TLI   C+ G
Sbjct: 280 EMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEG 339

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             ++A HL +EM  KG   D +TY+ LI G  K+ +
Sbjct: 340 DLNKALHLHDEMIHKGFLPDAVTYSVLINGLNKQAR 375



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 167/333 (50%), Gaps = 14/333 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           S  G  P+L+S NV+ + L    + K A + L+     GF+P+  +    +   C+ G  
Sbjct: 72  SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNTLLNGYCKEGNF 131

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            +A    +++   GV  S+ T+ + +    K    +   + +  +   G          L
Sbjct: 132 HQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTL 191

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  F   G ++E Y +L ++ E G  P    +N  I   C  +       ++  MV +  
Sbjct: 192 IDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGL 251

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           APD  +Y  +I+G C+  +   A+++  ++ E+G  PD V Y+++I GLC+M  L +A  
Sbjct: 252 APDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACD 311

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM+  GL P+E+TY ++I+ YC   +L +A  LH EM+ KG+    VTY+ LI GL 
Sbjct: 312 LSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYSVLINGLN 371

Query: 386 LHGRTDEAYH-LFEEMAQKGIFRDVITYNTLIQ 417
              RT EA   LF+ + ++ +  DV TY+TLI+
Sbjct: 372 KQARTREAKRLLFKLIYEESVPSDV-TYDTLIE 403



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 88/162 (54%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+    +P+ +TY  +I G C   +  +    F +++  G +P+ V Y T+I   CKMG 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A  +   M  KG+ PN  +YN +I+G CR  +++EA  + +EM  KG+    VTYNT
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L+ G C  G   +A  +  EM + G+   V+TY  LI   CK
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 162



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/96 (41%), Positives = 56/96 (58%)

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           MI   + PN YTYN +I G+C +  L++      EM   G     VTYNTLI   C  GR
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEA+ L + M+ KG+  ++I+YN +I G C+EG +
Sbjct: 61  IDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSM 96


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/396 (30%), Positives = 190/396 (47%), Gaps = 39/396 (9%)

Query: 62  LSDIPSFNFNDPLFF------------REFLKQQNNVLLS---IRFFQWLHSHYGF---- 102
           L D PSF     LFF            +  L Q N   LS   I     L S Y      
Sbjct: 33  LPDFPSF-----LFFNHHHITTSTCTKKRSLPQNNGGFLSNNSISIDDALASFYRMLRMN 87

Query: 103 -SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             P +V       S+ + + +   +     +D  G + N  SL + I CLC    +  A 
Sbjct: 88  PRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAI 147

Query: 159 CAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               K+ ++G+     T+N+ + G CI+ +  + V  L+++++  G+         +I  
Sbjct: 148 SVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVG-LFNEMVRRGHQPDVISYSTVING 206

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G  S   +LLR++ E G  P   A+  +I   C+        +LL  MV R   PD
Sbjct: 207 LCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPD 266

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C      EA  +FN++  R  +P+TV +T ++ GLCK G + +AR ++ 
Sbjct: 267 VVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFE 326

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  PN YTYN+++ GYC  + ++EA+++   M+DKG      +YN LI G C   
Sbjct: 327 AMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRR 386

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           R DEA  L  EM++K +  D +TY+TL+QG C+ G+
Sbjct: 387 RLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGR 422



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 167/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S + + + L ++    +A+  L   +  G  PN  +    I  LC+  L+ +A
Sbjct: 192 GHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDA 251

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               S++ + G+   + T+++ L G   +   +    L+++++             L+  
Sbjct: 252 MDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDG 311

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G VSE   +   + + G  P    +N L+  +C         ++L  MV +  AP 
Sbjct: 312 LCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPV 371

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK R+  EA  +  ++ E+   PDTV Y+T++ GLC++G   +A  ++ 
Sbjct: 372 VHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFK 431

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   GLLP+  TY++++ G C+  +L+EA +L K M +       V YN LI G+ + G
Sbjct: 432 EMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAG 491

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + + A  LF ++   GI   + TY  +I+G  KEG
Sbjct: 492 KLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEG 526



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 169/373 (45%), Gaps = 47/373 (12%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G + ++ S N+L + L        A+  L      G  P+  +    I   C  G I+E
Sbjct: 121 FGVTHNVYSLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKE 180

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A   F+++   G    + ++++ + G  K   T +  +L   + E G          +I 
Sbjct: 181 AVGLFNEMVRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIID 240

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C D  V++  +LL ++++ G+ P+   ++ ++  FC   +    + L + MV RN  P
Sbjct: 241 SLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMP 300

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  T+  +++GLCK     EA  VF  + ++G  P+   Y  ++ G C    + +A+K+ 
Sbjct: 301 NTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVL 360

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL- 386
             M+ KG  P  ++YN +I+GYC+   L+EAK L  EM +K     TVTY+TL+ GLC  
Sbjct: 361 DIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQV 420

Query: 387 ----------------------------------HGRTDEAYHLFEEMAQKGIFRDVITY 412
                                             HG  DEA  L + M +  I  D++ Y
Sbjct: 421 GRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLY 480

Query: 413 NTLIQGYCKEGKI 425
           N LI+G    GK+
Sbjct: 481 NILIEGMFIAGKL 493



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 113/227 (49%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++E G  + +     + S    L  Q+   G+     + N LI+  C   +      +L 
Sbjct: 92  VVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISVLG 151

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M      PD  T+  +ING C   +  EA  +FN++  RG+ PD + Y+TVI+GLCK G
Sbjct: 152 KMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCKSG 211

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A ++  +M  KG  PN   Y ++I   C+   + +A  L  EM+D+G     VTY+
Sbjct: 212 NTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYS 271

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T++ G C  G  +EA  LF EM  + +  + +T+  L+ G CKEG +
Sbjct: 272 TILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMV 318



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 100/194 (51%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F + +    +KK +  V  L + M       + ++   +IN LC+    + A  V
Sbjct: 90  PSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNILINCLCRLNHVVFAISV 149

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + G  PD + + T+I+G C  G + +A  ++ EM+ +G  P+  +Y+++I+G C+
Sbjct: 150 LGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVISYSTVINGLCK 209

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             N   A +L ++M +KG     V Y T+I  LC     ++A  L  EM  +GI  DV+T
Sbjct: 210 SGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVT 269

Query: 412 YNTLIQGYCKEGKI 425
           Y+T++ G+C  G +
Sbjct: 270 YSTILHGFCSLGHL 283



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 39/188 (20%), Positives = 86/188 (45%), Gaps = 12/188 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD V+ + L   L +    + A++      S+G  P+  +    +  LC+ G ++EA 
Sbjct: 403 LTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEAL 462

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
                ++E  +   I  +N  + G     + ++  +L+  L   G          +I+  
Sbjct: 463 KLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGL 522

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
             +G   E YEL R++ +DG +P + ++N +I  F + ++      L+  MV +  + D+
Sbjct: 523 LKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRFSADS 582

Query: 270 FTYEEVIN 277
            T++ +++
Sbjct: 583 STFQMLLD 590



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 43/106 (40%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA   ++ M+     P+   +   +    +         L  +M   G      + N 
Sbjct: 73  IDDALASFYRMLRMNPRPSVVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVYSLNI 132

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI  LC       A  +  +M + GI  D IT+NTLI G C EG+I
Sbjct: 133 LINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEI 178


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 175/338 (51%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+ + N +      +   + A +    +  +G+ P+  S  + I  L + G ++E+
Sbjct: 40  GCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDES 99

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               S++   G   S++ ++S +    K  R D    L+ ++I  G+         LI  
Sbjct: 100 LKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILG 159

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GKV +  E  +Q+ + G  P    +N L+   C      + + L   M + + +PD
Sbjct: 160 LCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPD 219

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ +CK+R+  E  ++F  ++  GYVP+ + ++T+IHGLC+ G L  A +++ 
Sbjct: 220 VVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFG 279

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  G  PN+YTY ++I G CR + + +A+ L ++M         V YN+LIAG C  G
Sbjct: 280 SMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRG 339

Query: 389 RTDEAYHLFEEMA-QKGIFRDVITYNTLIQGYCKEGKI 425
             DEA  L+ EM+   G+   ++T+NTLI G+CK GK+
Sbjct: 340 SMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKL 377



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 138/292 (47%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I+ L +    EE++    ++   G    +  +N  + G  + +  +   ++Y  ++ESGY
Sbjct: 17  IKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGY 76

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI      GK+ E  ++L +++  G  P   A++ L+    + +     S 
Sbjct: 77  KPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASS 136

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+     PD   + E+I GLC++ K  +A   F  + + G  P+  +Y  ++HGLC
Sbjct: 137 LFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLC 196

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G L  A  ++ EM      P+  TYN+++   C+   +EE  +L + M   GY    +
Sbjct: 197 SSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVI 256

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           T++TLI GLC  G  ++A  +F  M + G   +  TY TLI G C+  K++ 
Sbjct: 257 TFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQ 308



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 152/338 (44%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD +    L   L +A   K A +    +   G  PN     + +  LC SG +E+A
Sbjct: 145 GHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQA 204

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++K       + T+N+ L    K  R +   KL+  +  +GY         LI  
Sbjct: 205 NTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHG 264

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ +  E+   +LE G  P    +  LIS  C  +   +  EL   M      PD
Sbjct: 265 LCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPD 324

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              Y  +I G CK     EA +++ ++    G  P  V + T+I G CK+G LG A ++ 
Sbjct: 325 AVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELV 384

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  KGL  +  TY  +I G  R   L+EA  ++K+M +K +    V+  + + GLC  
Sbjct: 385 AEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKT 444

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D+AY +FE   + G   +  T+  L +   K G++
Sbjct: 445 GNIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRV 482



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 111/221 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I++   + K  E Y++L +++  G  P+  AFN ++  F    N  +  E+   MV   
Sbjct: 16  IIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 75

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PDN +Y  +I+GL K  K  E+ ++ +++  RG  P    Y++++  L K   +  A 
Sbjct: 76  YKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHAS 135

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ EMI  G  P+   +  +I G C+   +++A    K+M   G       YN L+ GL
Sbjct: 136 SLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGL 195

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G+ ++A  LF EM       DV+TYNTL+   CK  ++
Sbjct: 196 CSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRV 236



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 134/283 (47%), Gaps = 14/283 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCL 148
            F  + SH   SPD+V+ N L D++ +AR  +      ++    G+ PN  +    I  L
Sbjct: 207 LFAEMKSH-SCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGL 265

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DL 199
           C +G +E+A   F  + E G   +  T+ + + G  + ++     +L+          D 
Sbjct: 266 CRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDA 325

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +    LI  +C  G + E  +L R++    GL P    FN LI  FC+    GR +EL+ 
Sbjct: 326 VAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVA 385

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +  A D+ TY  +I GL ++ K  EA  V+  ++E+ ++ D V   + + GLCK G
Sbjct: 386 EMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTG 445

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
            +  A  ++      G +PN  T+  +     ++  +E+A++L
Sbjct: 446 NIDQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKL 488



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/166 (30%), Positives = 87/166 (52%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  +N A + FTY  +I  L K  K  E+Y+V  ++   G  PD   +  V+ G  +   
Sbjct: 1   MRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNN 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  AR+++  M+  G  P+  +Y+ +IHG  +I  L+E+ ++  EM+ +G   +   Y++
Sbjct: 61  MEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSS 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L+  L    R D A  LF+EM + G   D + +  LI G C+ GK+
Sbjct: 121 LVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKV 166


>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Brachypodium distachyon]
          Length = 787

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/409 (29%), Positives = 188/409 (45%), Gaps = 83/409 (20%)

Query: 100 YGFSPDLVSCNVLFDS------LVEARAFKVAM--------------------------- 126
           +G SPD V+ N L ++      L EARA    M                           
Sbjct: 233 FGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQ 292

Query: 127 -----DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSAL 180
                + + + GF P+  +  +    LC++G ++EAF    +++ +G +   + T+N+  
Sbjct: 293 ATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLA 352

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
             C K   +    +L  ++ E G          +I+  C DG++      L ++ +DGL 
Sbjct: 353 DACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLA 412

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+   +N LI   C+  N  +   L+  MV R    D FT   V+  LCK ++  EA  +
Sbjct: 413 PDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCKEKRYEEAQGL 472

Query: 292 FNDLKERGYVPD-----TVM------------------------------YTTVIHGLCK 316
                +RG++PD     TVM                              Y T+I GL +
Sbjct: 473 LQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIKGLSR 532

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           MG L +A     E++ KGL+P++ TYN +IH YC+  +LE A + H +M++  +    VT
Sbjct: 533 MGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMVENSFKPDVVT 592

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            NTL+ GLCL+G+ D+A  LFE   +KG   DVITYNTLIQ  CK+G +
Sbjct: 593 CNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDV 641



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 74/240 (30%), Positives = 116/240 (48%), Gaps = 1/240 (0%)

Query: 188 RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
           R+ +  +L+ +      L+   C+ G +++    L  +   GL P+   +N L++  C K
Sbjct: 193 RSIVALRLHPNHYTFNLLVHTHCSKGTLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRK 252

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
              G    LL  M     AP   TY  +++   +     +A +V   +   G+ PD   Y
Sbjct: 253 GMLGEARALLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTY 312

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
             +  GLC+ G + +A ++  EM   G LLP+  TYN++     +     +A RL +EM 
Sbjct: 313 NVLAAGLCQAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMR 372

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +KG   T VT+N +I GLC  G  + A     +MA  G+  DVITYNTLI  +CK G I 
Sbjct: 373 EKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGNIA 432



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 148/338 (43%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D  + N +  +L + + ++ A   L S    GF P+  S    +    +    E A
Sbjct: 445 GLKLDTFTLNTVLYNLCKEKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPA 504

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + ++ E  +  SI T+N+ + G  ++ R        ++L+E G          +I A
Sbjct: 505 LRLWDEMIEKKLTPSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHA 564

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G +   ++   +++E+   P+    N L++  C      +  +L  + V + +  D
Sbjct: 565 YCKEGDLENAFQFHNKMVENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVD 624

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I  +CK      A   F D++ RG  PD   Y  V+  L + G   +A+ M  
Sbjct: 625 VITYNTLIQTMCKDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLH 684

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK--RLHKEMLDKGYGETTVTYNTLIAGLCL 386
           ++   G L    +++S +     +D  E  K  +  +E ++      +  Y  L+ GLC 
Sbjct: 685 KLAESGTL--SQSFSSPLLKPSSVDEAESGKDAKTEEETVENPQDSASEAYTKLVNGLCT 742

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            G+  EA  + +EM QKG+  D  TY TL++G  K  K
Sbjct: 743 SGQFKEAKAILDEMMQKGMSVDSSTYITLMEGLVKRQK 780



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/350 (22%), Positives = 146/350 (41%), Gaps = 47/350 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D+  + R    A+  L+     G      +  + I+ LC+ G +E A   
Sbjct: 343 PDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGC 402

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF---------CN 211
            +K+ + G+   + T+N+ +    K       + L  +++  G  +  F         C 
Sbjct: 403 LNKMADDGLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMVRRGLKLDTFTLNTVLYNLCK 462

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + +  E   LL+   + G +P+  ++  +++ + ++ N      L   M+ +   P   T
Sbjct: 463 EKRYEEAQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSIST 522

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH------------------- 312
           Y  +I GL +  +  EA    N+L E+G VPD   Y  +IH                   
Sbjct: 523 YNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQFHNKMV 582

Query: 313 ----------------GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                           GLC  G L  A K++   + KG   +  TYN++I   C+  +++
Sbjct: 583 ENSFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMCKDGDVD 642

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            A     +M  +G      TYN +++ L   GRT+EA ++  ++A+ G  
Sbjct: 643 TALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAESGTL 692



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 98/190 (51%), Gaps = 3/190 (1%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSEL--LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           P   A N ++S      +    + L    ++VA    P+++T+  +++  C      +A 
Sbjct: 165 PSLQAANAVLSALARSPSTSPQASLDAFRSIVALRLHPNHYTFNLLVHTHCSKGTLADAL 224

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
              + ++  G  PD V Y T+++  C+ G LG+AR +   M   G+ P   TYN+++  Y
Sbjct: 225 STLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYNTLVSAY 284

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRD 408
            R+  +++A ++ + M   G+     TYN L AGLC  G+ DEA+ L +EM + G +  D
Sbjct: 285 ARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMERLGTLLPD 344

Query: 409 VITYNTLIQG 418
           V+TYNTL   
Sbjct: 345 VVTYNTLADA 354


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/340 (30%), Positives = 173/340 (50%), Gaps = 17/340 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+  V+ + L   +    A   L+     G  P+  +  ++I  LC++  +++AF 
Sbjct: 4   SPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQ 63

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
              K+ E     +  T+ + + G +K  R D    +   ++E G          +I    
Sbjct: 64  LLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLS 123

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----A 266
             G+V E   +   +L +G  P+   +  LI   C+         L     AR       
Sbjct: 124 KAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAV 183

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFND-LKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           PD  TY  +I+GLCK+ + LEA +VF+D   ERG++PD V YT++I GLCK+G + +  +
Sbjct: 184 PDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCE 243

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            + EM ++G  P+  TY ++I G+ +   + +A R++++ML  G   +TVTYN ++ GLC
Sbjct: 244 RFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             GR  EAY  F  M ++G    V+TY+ L+ G+C EG +
Sbjct: 304 KAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNV 343



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 158/347 (45%), Gaps = 23/347 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ NV  D L +A     A   L   D     P   +    +  L ++G ++EA
Sbjct: 37  GCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEA 96

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ E G   ++KT+   + G  K  R +   +++ D++ +G          LI+ 
Sbjct: 97  MAVLEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKG 156

Query: 209 FCNDGKVSEGYELLRQV----LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM---- 260
            C  GK  E Y L ++          VP+   +  LI   C+    GR+ E         
Sbjct: 157 LCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKA---GRILEARQVFDDEA 213

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           V R   PD  TY  +I+GLCK  +  E    F++++ RGY PD V Y  +I G  K   +
Sbjct: 214 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 273

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+  G + +  TYN ++ G C+   + EA      M ++G   T VTY+ L
Sbjct: 274 PKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSAL 333

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + G C  G    A  LF  M  +G   ++++YN +I+G C+ GK+  
Sbjct: 334 MDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAK 380



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 15/334 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEA-RAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           H    PD+V+   L D L +A R  +    F D     GF P+  +    I  LC+ G +
Sbjct: 179 HATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRV 238

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ------- 207
           EE    F +++  G      T+ + + G +K        ++Y  +++SG ++        
Sbjct: 239 EEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNII 298

Query: 208 --AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
               C  G+V+E Y     + E G V     ++ L+  FC + N     EL   M+ R  
Sbjct: 299 LDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGC 358

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC-KMGWLGDAR 324
            P+  +Y  +I GLC++ K  +AY  F  L +R   PD   +   +HGLC ++  + D  
Sbjct: 359 EPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGV 418

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++  M+ +G  PN ++Y+ ++ G CR   LE A  + +EM+ +G     V +NTLI  L
Sbjct: 419 ELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWL 478

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           C+ GR DEA  +F E+ ++    D  +Y +L+ G
Sbjct: 479 CIAGRVDEALEVFRELERRSA-PDAWSYWSLLDG 511



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/379 (25%), Positives = 167/379 (44%), Gaps = 55/379 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP L +  V+ D L +A     A ++ +D L   G  P+       I+ LC+SG  EE
Sbjct: 107 GNSPTLKTYTVVIDGLSKAGRVEEARRIFVDML-GNGCRPDAFVYTALIKGLCKSGKPEE 165

Query: 157 AFCAF----SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD-LIESGYL------ 205
           A+  +    ++         + T+ S + G  K  R     +++ D  +E G++      
Sbjct: 166 AYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTY 225

Query: 206 ---IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
              I   C  G+V EG E   ++   G  P+   +  LI  F + K   +   +   M+ 
Sbjct: 226 TSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQ 285

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--------------------- 301
                   TY  +++GLCK+ +  EAY  F  ++ERG V                     
Sbjct: 286 SGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSA 345

Query: 302 --------------PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
                         P+ V Y  +I GLC+ G L  A   + +++ + L P+ YT+N+ +H
Sbjct: 346 AVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLH 405

Query: 348 GYC-RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           G C R+D + +   L + M+ +G      +Y+ L+ G+C  G  + A  +F EM  +G+ 
Sbjct: 406 GLCQRLDTVSDGVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVA 465

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DV+ +NTLI+  C  G++
Sbjct: 466 PDVVVFNTLIRWLCIAGRV 484



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 4/199 (2%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+  AF  +I+  C +K       +L   V     PD  TY   I+GLCK+ +  +A+++
Sbjct: 5   PDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQL 64

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + E+  +P TV YT ++ GL K G L +A  +  +M+ KG  P   TY  +I G  +
Sbjct: 65  LKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDGLSK 124

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK----GIFR 407
              +EEA+R+  +ML  G       Y  LI GLC  G+ +EAY L++E   +        
Sbjct: 125 AGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVP 184

Query: 408 DVITYNTLIQGYCKEGKIV 426
           DV+TY +LI G CK G+I+
Sbjct: 185 DVVTYTSLIDGLCKAGRIL 203



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 117/289 (40%), Gaps = 51/289 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ PD V+   L D  ++A+    A +V    L S G   +  +  + +  LC++G + E
Sbjct: 252 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQS-GTVVSTVTYNIILDGLCKAGRVAE 310

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A+  F  ++E G   ++ T+++ + G           +L+  +++ G          +I+
Sbjct: 311 AYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIR 370

Query: 208 AFCNDGK------------------------------------VSEGYELLRQVLEDGLV 231
             C  GK                                    VS+G EL   ++  G  
Sbjct: 371 GLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTS 430

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P   +++ L+   C         E+   MV+R  APD   +  +I  LC + +  EA  V
Sbjct: 431 PNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEV 490

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           F +L ER   PD   Y +++ GL +   + +AR + F M  +G  P  Y
Sbjct: 491 FREL-ERRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAPRHY 538


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 166/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + ++L D     +   +A          G  P+  +    I  LC+ G   +A
Sbjct: 125 GLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQA 184

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F   +  G   ++ T+ + + G  KI  T     L+  + E+G          LI +
Sbjct: 185 VEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDS 244

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C D  V+E  ++   +    + P+   +N LI   C  + +   S LL+ M + N  P+
Sbjct: 245 LCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPN 304

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +++ +CK  K  EA  VF  + E G  PD V Y+++++G      + +ARK++ 
Sbjct: 305 IFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFD 364

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI KG  P+ ++YN +I GYC+   ++EAK+L  EM+ +G     V YNTLI GLC  G
Sbjct: 365 AMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLG 424

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R  EA  LF+ M   G   D+ TY+ L+ G+CKEG
Sbjct: 425 RLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEG 459



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 152/306 (49%), Gaps = 9/306 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           ++  G SP+  +L + I C      ++ AF  FSK+ ++G+     T+N+ + G  K+ +
Sbjct: 121 MELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGK 180

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                + + D   SG          +I   C  G+ +    L +++ E G  P    +N 
Sbjct: 181 FAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNI 240

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C+ K      ++   M A+  +PD FTY  +I GLC  R+  EA  + N++    
Sbjct: 241 LIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLN 300

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            +P+   +  ++  +CK G + +A+ ++  M   G+ P+  TY+S+++GY     + EA+
Sbjct: 301 IMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEAR 360

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +L   M+ KG      +YN LI G C   R DEA  LF EM  +G+  D + YNTLI G 
Sbjct: 361 KLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGL 420

Query: 420 CKEGKI 425
           C+ G++
Sbjct: 421 CQLGRL 426



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 167/374 (44%), Gaps = 55/374 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS----------------------------- 131
           G  PD V+ N L + L +   F  A++F D                              
Sbjct: 160 GLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAA 219

Query: 132 ---------TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
                     G  PN  +  + I  LC+  L+ EA   FS +K   +   I T+NS + G
Sbjct: 220 AGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQG 279

Query: 183 CIKIDRTDLVWK-------------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
                R    WK             +  ++     L+ A C +GKVSE   + + + E G
Sbjct: 280 LCNFRR----WKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKTMTEMG 335

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           + P+   ++ L+  +  +       +L   M+ +   PD F+Y  +I G CK+++  EA 
Sbjct: 336 VEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAK 395

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           ++FN++  +G  PD V Y T+IHGLC++G L +A+ ++  M   G LP+ +TY+ ++ G+
Sbjct: 396 QLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGF 455

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   L +A RL + M           YN LI  +C  G   +A  LF E+  +G+  +V
Sbjct: 456 CKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDARKLFSELFVQGLLPNV 515

Query: 410 ITYNTLIQGYCKEG 423
             Y T+I   CKEG
Sbjct: 516 QIYTTIINNLCKEG 529



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 40  YTEIAKQVCKITRT-------KPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           YT I   +CKI  T       K   E     ++ ++N        + L +   V  ++  
Sbjct: 203 YTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNI-----LIDSLCKDKLVNEALDI 257

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
           F ++ +    SPD+ + N L   L   R +K A   L+   S    PN  +  + +  +C
Sbjct: 258 FSYMKAKR-ISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAIC 316

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESG----- 203
           + G + EA   F  + EMGV   + T++S + G  ++++  +   KL+  +I  G     
Sbjct: 317 KEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVE-ARKLFDAMITKGCKPDA 375

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI+ +C   ++ E  +L  +++  GL P+N  +N LI   C+        +L   
Sbjct: 376 FSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKN 435

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M +    PD FTY  +++G CK     +A+R+F  ++     PD  MY  +I  +CK G 
Sbjct: 436 MHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGN 495

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DARK++ E+  +GLLPN   Y ++I+  C+   L+EA    + M   G      +YN 
Sbjct: 496 LKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPDEFSYNV 555

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +I G   +     A  L  EM  +G   +  T
Sbjct: 556 IIRGFLQYKDESRAAQLIGEMRDRGFVAEAGT 587



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 72/232 (31%), Positives = 115/232 (49%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  D+     LI  F +  +V   + +  ++++ GL P+   FN LI+  C+   F +  
Sbjct: 126 LSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAV 185

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           E      A    P  +TY  +INGLCK  +   A  +F  ++E G  P+ V Y  +I  L
Sbjct: 186 EFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSL 245

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK   + +A  ++  M  K + P+ +TYNS+I G C     +EA  L  EM         
Sbjct: 246 CKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNI 305

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            T+N L+  +C  G+  EA  +F+ M + G+  DV+TY++L+ GY    +IV
Sbjct: 306 FTFNVLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIV 357



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/205 (34%), Positives = 98/205 (47%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L +Q+   GL P+    + LI  F   +       +   M+     PD  T+  +INGLC
Sbjct: 117 LSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLC 176

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  K  +A   F+D +  G  P    YTT+I+GLCK+G    A  ++ +M   G  PN  
Sbjct: 177 KVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAGCQPNVV 236

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYN +I   C+   + EA  +   M  K       TYN+LI GLC   R  EA  L  EM
Sbjct: 237 TYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEM 296

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
               I  ++ T+N L+   CKEGK+
Sbjct: 297 TSLNIMPNIFTFNVLVDAICKEGKV 321



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 1/191 (0%)

Query: 231 VPENTAFNKLISRFCE-KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           +P    F KL+S   +  + +G V  L   M     +PD +T   +I+     ++   A+
Sbjct: 91  LPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSILIDCFSHLQRVDLAF 150

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            VF+ + + G  PD V + T+I+GLCK+G    A + + +    G  P  YTY ++I+G 
Sbjct: 151 SVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGL 210

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+I     A  L K+M + G     VTYN LI  LC     +EA  +F  M  K I  D+
Sbjct: 211 CKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDI 270

Query: 410 ITYNTLIQGYC 420
            TYN+LIQG C
Sbjct: 271 FTYNSLIQGLC 281



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG-WLGDARKMWFEMIHKGLLPNEYTYNSM 345
           +A   FN +  R  +P  + +T ++  + KMG + G    +  +M   GL P+ YT + +
Sbjct: 77  DALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSIL 136

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I  +  +  ++ A  +  +M+  G     VT+NTLI GLC  G+  +A   F++    G 
Sbjct: 137 IDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGC 196

Query: 406 FRDVITYNTLIQGYCKEGK 424
              V TY T+I G CK G+
Sbjct: 197 QPTVYTYTTIINGLCKIGE 215


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 170/335 (50%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  P++ + N+L +S         AF V    L   G  P+P +    I+ LC  G I 
Sbjct: 85  FGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL-KLGHQPDPTTFTTLIRGLCVEGKIG 143

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
           EA   F K+ + G   ++ T+ + + G  K+  T    +L           D++    +I
Sbjct: 144 EALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSII 203

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + L  Q++  G+ P+   +  L+   C    +  V+ LL+ MV     
Sbjct: 204 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKIL 263

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD   +  V++ LCK  K  EA+ + + + +RG  PD V YTT++ G C    + +A K+
Sbjct: 264 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 323

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+ KG  P+  +Y ++I+GYC+I  +++A  L +EM  K +   T TYNTL+ GLC 
Sbjct: 324 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCH 383

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR  +A  LF EM  +G   D++TY+ L+   CK
Sbjct: 384 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCK 418



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 163/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L + L +      A+  L S       P+       I  LC+   + EA
Sbjct: 156 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 215

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+   I T+ S +     +     V  L + ++ S  L         + A
Sbjct: 216 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 275

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV+E +E++  +++ G+ P+   +  L+   C +       ++   MV +  APD
Sbjct: 276 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 335

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK  K  +A  +F ++  + ++PDT  Y T++HGLC +G L DA  ++ 
Sbjct: 336 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFH 395

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G +P+  TY+ ++   C+  +LEEA  L K +           YN +I G+C  G
Sbjct: 396 EMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAG 455

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  ++ KG+   V TYN +I G CK G
Sbjct: 456 ELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 490



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 162/346 (46%), Gaps = 14/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P +V    L  S+ + + +   +     +DS G  PN  +L + I   
Sbjct: 44  FNRLLHMHP--PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSF 101

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C    +  AF   +K+ ++G      T+ + + G     +      L+  +I+ G+    
Sbjct: 102 CHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNV 161

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C  G  S    LLR + +    P+   +  +I   C+ +       L   
Sbjct: 162 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQ 221

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV +  +PD FTY  +++ LC   +      + N +     +PD V+++TV+  LCK G 
Sbjct: 222 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 281

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A ++   MI +G+ P+  TY +++ G+C    ++EA ++   M+ KG+    ++Y T
Sbjct: 282 VTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTT 341

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C   + D+A +LFEEM +K    D  TYNTL+ G C  G++
Sbjct: 342 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRL 387



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 146/335 (43%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ +   L  +L     +K     L+   ++   P+       +  LC+ G + EA
Sbjct: 226 GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEA 285

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + GV   + T+ + + G       D   K++  ++  G+         LI  
Sbjct: 286 HEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLING 345

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+ +   L  ++     +P+   +N L+   C          L H MVAR + PD
Sbjct: 346 YCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPD 405

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+    EA  +   ++     PD  +Y  +I G+C+ G L  AR ++ 
Sbjct: 406 LVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFS 465

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL P+ +TYN MIHG C+   L EA +L  EM          TYNT+  G   + 
Sbjct: 466 NLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNN 525

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            T  A  L EEM  +G   DV T   L++    +G
Sbjct: 526 ETLRAIQLLEEMLARGFSADVSTTTLLVEMLSDDG 560



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 71/137 (51%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN L      P  V +  ++  + KM        +  +M   G+ PN YT N +I
Sbjct: 39  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 98

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C ++ +  A  +  ++L  G+     T+ TLI GLC+ G+  EA HLF++M  +G  
Sbjct: 99  NSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQ 158

Query: 407 RDVITYNTLIQGYCKEG 423
            +V+TY TLI G CK G
Sbjct: 159 PNVVTYGTLINGLCKVG 175



 Score = 42.7 bits (99), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 45/106 (42%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DA   +  ++H    P+   +  ++    ++ +      L  +M   G      T N 
Sbjct: 37  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 96

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI   C   R   A+ +  ++ + G   D  T+ TLI+G C EGKI
Sbjct: 97  LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKI 142


>gi|115486223|ref|NP_001068255.1| Os11g0607100 [Oryza sativa Japonica Group]
 gi|77551887|gb|ABA94684.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645477|dbj|BAF28618.1| Os11g0607100 [Oryza sativa Japonica Group]
          Length = 671

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 13/340 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
            YGFS D  +C V+  SL E   FK   +F      TG  PN  +   +I  LC+   ++
Sbjct: 209 RYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVK 268

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YL 205
           +AF    ++   G+  ++ T  + + G  KI  T+  ++L+  LI+S            +
Sbjct: 269 QAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVM 328

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C +GK++    LL +++E GL P    +  LI   C+  +F R  EL++ M     
Sbjct: 329 IGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 388

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+ +TY  VI+G CK  K  EAY+V      +G   D + YT +I   CK G +  A  
Sbjct: 389 LPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALD 448

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M+  G  P+   Y S+I  YC+   +EE+++   + L  G   T  TY ++IAG C
Sbjct: 449 LFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYC 508

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             GR+  A  +FE M Q G F D ITY  LI G CKE ++
Sbjct: 509 KVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 548



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 10/286 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           E+G + EA     +++  G+   ++T N  L   ++        K++  +  +G      
Sbjct: 123 EAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAGVCPDER 182

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+   C +GKV E   LL  +   G   +N     ++   CEK  F  VSE    M
Sbjct: 183 SFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRM 242

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +     P+   Y   I+GLCK R   +A+ V  ++  RG  P+   +TT+I GLCK+GW 
Sbjct: 243 LETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWT 302

Query: 321 GDARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             A +++ ++I      PN +TY  MI GYCR   L  A+ L   M+++G    T TY T
Sbjct: 303 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTT 362

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C  G  D A+ L  +M Q+G   ++ TYN +I G+CK+GKI
Sbjct: 363 LIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI 408



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 158/345 (45%), Gaps = 20/345 (5%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMD 127
           D L  R ++KQ  +VL  +          G  P++ +   L D L +     RAF++ + 
Sbjct: 259 DGLCKRRYVKQAFHVLEEM-------VGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLK 311

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            + S+ + PN ++  + I   C  G +  A     ++ E G+  +  T+ + + G  K  
Sbjct: 312 LIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGG 371

Query: 188 RTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             D  ++L + + + G+L         I  FC  GK+ E Y++LR     GL  +   + 
Sbjct: 372 SFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYT 431

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI+  C++ +     +L   MV     PD   Y  +I+  C+ R+  E+ + F+     
Sbjct: 432 ILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMI 491

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G +P    YT++I G CK+G    A +++  M+  G   +  TY ++I G C+   LEEA
Sbjct: 492 GLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEA 551

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           K L++ MLDK      VT  TL    C   +T  A  + + + ++
Sbjct: 552 KALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKR 596



 Score = 44.7 bits (104), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 17/260 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF P++ + N + D   +      A+KV +    S G   +  +  + I   C+ G I  
Sbjct: 387 GFLPNIYTYNAVIDGFCKKGKIQEAYKV-LRMATSQGLKFDKITYTILITEHCKQGHITY 445

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F ++ E G    I+ + S +    +  + +   K +   +  G L         I 
Sbjct: 446 ALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIA 505

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G+ +    +  +++++G   ++  +  LIS  C++        L   M+ +   P
Sbjct: 506 GYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVP 565

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              T   +    C+  K   A  V + L +R  V        V+  L  +G +  A    
Sbjct: 566 CEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVHTV---DVVVRKLSALGDVDAASLFL 622

Query: 328 FEMIHKGLLPNEYTYNSMIH 347
            +++ +    +  TY   I+
Sbjct: 623 KKVLDEDYAVDHATYTGFIN 642


>gi|125569916|gb|EAZ11431.1| hypothetical protein OsJ_01299 [Oryza sativa Japonica Group]
          Length = 563

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 13/340 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
            YGFS D  +C V+  SL E   FK   +F      TG  PN  +   +I  LC+   ++
Sbjct: 101 RYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLETGTPPNVVNYTAWIDGLCKRRYVK 160

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YL 205
           +AF    ++   G+  ++ T  + + G  KI  T+  ++L+  LI+S            +
Sbjct: 161 QAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVM 220

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C +GK++    LL +++E GL P    +  LI   C+  +F R  EL++ M     
Sbjct: 221 IGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGF 280

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+ +TY  VI+G CK  K  EAY+V      +G   D + YT +I   CK G +  A  
Sbjct: 281 LPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALD 340

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M+  G  P+   Y S+I  YC+   +EE+++   + L  G   T  TY ++IAG C
Sbjct: 341 LFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYC 400

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             GR+  A  +FE M Q G F D ITY  LI G CKE ++
Sbjct: 401 KVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRL 440



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/224 (37%), Positives = 118/224 (52%), Gaps = 1/224 (0%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G L+   C +GKV E   LL  +   G   +N     ++   CEK  F  VSE    M+ 
Sbjct: 77  GALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLE 136

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               P+   Y   I+GLCK R   +A+ V  ++  RG  P+   +TT+I GLCK+GW   
Sbjct: 137 TGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTER 196

Query: 323 ARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           A +++ ++I      PN +TY  MI GYCR   L  A+ L   M+++G    T TY TLI
Sbjct: 197 AFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLI 256

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G C  G  D A+ L  +M Q+G   ++ TYN +I G+CK+GKI
Sbjct: 257 GGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKI 300



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 158/345 (45%), Gaps = 20/345 (5%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMD 127
           D L  R ++KQ  +VL  +          G  P++ +   L D L +     RAF++ + 
Sbjct: 151 DGLCKRRYVKQAFHVLEEM-------VGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLK 203

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            + S+ + PN ++  + I   C  G +  A     ++ E G+  +  T+ + + G  K  
Sbjct: 204 LIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGG 263

Query: 188 RTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             D  ++L + + + G+L         I  FC  GK+ E Y++LR     GL  +   + 
Sbjct: 264 SFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYT 323

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI+  C++ +     +L   MV     PD   Y  +I+  C+ R+  E+ + F+     
Sbjct: 324 ILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMI 383

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G +P    YT++I G CK+G    A +++  M+  G   +  TY ++I G C+   LEEA
Sbjct: 384 GLLPTKQTYTSMIAGYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEA 443

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           K L++ MLDK      VT  TL    C   +T  A  + + + ++
Sbjct: 444 KALYEGMLDKRLVPCEVTRVTLTFEYCRREKTSIAVSVLDRLDKR 488



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 105/223 (47%), Gaps = 1/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ AF   G++ E  +++ ++   GL       N ++    E  +F    ++   M    
Sbjct: 9   MVAAFGEAGRLPEAADMVLEMRSHGLPLCVETANWVLRVGLETGSFVYARKVFDGMTRAG 68

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P N  +  ++   C+  K  E   +   +   G+  D    T V+  LC+ G   D  
Sbjct: 69  VSPMNRGFGALVVVCCREGKVEEVDALLAAMWRYGFSLDNATCTVVVRSLCEKGRFKDVS 128

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           + +  M+  G  PN   Y + I G C+   +++A  + +EM+ +G      T+ TLI GL
Sbjct: 129 EFFRRMLETGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEMVGRGLKPNVYTHTTLIDGL 188

Query: 385 CLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKIV 426
           C  G T+ A+ LF ++ +   ++ +V TY  +I GYC+EGK+ 
Sbjct: 189 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGKLA 231



 Score = 45.1 bits (105), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 49/260 (18%), Positives = 99/260 (38%), Gaps = 17/260 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF P++ + N + D   +      A+KV +    S G   +  +  + I   C+ G I  
Sbjct: 279 GFLPNIYTYNAVIDGFCKKGKIQEAYKV-LRMATSQGLKFDKITYTILITEHCKQGHITY 337

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F ++ E G    I+ + S +    +  + +   K +   +  G L         I 
Sbjct: 338 ALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIA 397

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G+ +    +  +++++G   ++  +  LIS  C++        L   M+ +   P
Sbjct: 398 GYCKVGRSTLALRVFERMVQNGCFADSITYGALISGLCKESRLEEAKALYEGMLDKRLVP 457

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              T   +    C+  K   A  V + L +R  V        V+  L  +G +  A    
Sbjct: 458 CEVTRVTLTFEYCRREKTSIAVSVLDRLDKRQQVHTV---DVVVRKLSALGDVDAASLFL 514

Query: 328 FEMIHKGLLPNEYTYNSMIH 347
            +++ +    +  TY   I+
Sbjct: 515 KKVLDEDYAVDHATYTGFIN 534


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 170/348 (48%), Gaps = 13/348 (3%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQ 146
           +    W+   +G  PD    N + + LV+  + K   ++   +   G  P+ ++  + I+
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--- 203
            LC +  +  A      +   G+    KT+ + + G I+    D   ++   ++E G   
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257

Query: 204 ------YLIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                  ++  FC +G+V +    ++++  +DG  P+   FN L++  C+  +     E+
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+     PD +TY  VI+GLCK  +  EA  V + +  R   P+TV Y T+I  LCK
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A ++   +  KG+LP+  T+NS+I G C   N   A  L +EM  KG      T
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           YN LI  LC  G+ DEA ++ ++M   G  R VITYNTLI G+CK  K
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/400 (26%), Positives = 185/400 (46%), Gaps = 20/400 (5%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNF-NDPLFFREFLK---QQNNVLLSIRFFQWLHS 98
           + K +C+  + +P     +L D+PS+    D   F   ++   ++ ++  ++R  + +  
Sbjct: 195 LIKALCRAHQLRPAI--LMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQM-V 251

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLI 154
            +G S   VS NV+     +    + A++F+    +  GF P+  +    +  LC++G +
Sbjct: 252 EFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYL 205
           + A      + + G    + T+NS + G  K+       ++   +I             L
Sbjct: 312 KHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTL 371

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C + +V E  EL R +   G++P+   FN LI   C  +N     EL   M ++  
Sbjct: 372 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGC 431

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FTY  +I+ LC   K  EA  +   ++  G     + Y T+I G CK     +A +
Sbjct: 432 EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEE 491

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM   G+  N  TYN++I G C+   +E+A +L  +M+ +G      TYN+L+   C
Sbjct: 492 IFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFC 551

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G   +A  + + M   G   D++TY TLI G CK G++
Sbjct: 552 RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 164/348 (47%), Gaps = 12/348 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++ F Q + +  GF PD  + N L + L +A   K A++ +D     G+ P+  +    I
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             LC+ G ++EA     ++       +  T+N+ +    K ++ +   +L   L   G L
Sbjct: 338 SGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 206 ---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                    IQ  C         EL  ++   G  P+   +N LI   C K        +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M     A    TY  +I+G CK+ K  EA  +F++++  G   ++V Y T+I GLCK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + DA ++  +MI +G  P++YTYNS++  +CR  ++++A  + + M   G     VT
Sbjct: 518 SRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVT 577

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           Y TLI+GLC  GR + A  L   +  KGI      YN +IQG  ++ K
Sbjct: 578 YGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRK 625



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 152/336 (45%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+ + N +   L +    K A++ LD   +   SPN  +    I  LC+   +EEA
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G+   + T+NS + G        +  +L+ ++   G          LI +
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ GK+ E   +L+Q+   G       +N LI  FC+        E+   M     + +
Sbjct: 445 LCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRN 504

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GLCKSR+  +A ++ + +   G  PD   Y +++   C+ G +  A  +  
Sbjct: 505 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQ 564

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  P+  TY ++I G C+   +E A +L + +  KG   T   YN +I GL    
Sbjct: 565 AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKR 624

Query: 389 RTDEAYHLFEEM-AQKGIFRDVITYNTLIQGYCKEG 423
           +T EA +LF EM  Q     D ++Y  + +G C  G
Sbjct: 625 KTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGG 660



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 84/195 (43%), Gaps = 1/195 (0%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           PE   + +++ R     +F  + ++L  M +        T+  +I    +   + E   V
Sbjct: 81  PEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQFELQDEILSV 140

Query: 292 FN-DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            +  + E G  PDT  Y  +++ L     L        +M   G+ P+  T+N +I   C
Sbjct: 141 VDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALC 200

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R   L  A  + ++M   G      T+ T++ G    G  D A  + E+M + G     +
Sbjct: 201 RAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNV 260

Query: 411 TYNTLIQGYCKEGKI 425
           + N ++ G+CKEG++
Sbjct: 261 SVNVIVHGFCKEGRV 275


>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
          Length = 793

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/373 (29%), Positives = 177/373 (47%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P   + N L  +       K A D +++    GF P+  +  +    LC++G ++EA
Sbjct: 274 GIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEA 333

Query: 158 FCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           F    +++++G+    + T+N+ +  C K  R+     L  ++ E G          +++
Sbjct: 334 FKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVK 393

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C +G++ E    L  + E+GL P+   +N LI   C+  N  +   L+  MV      
Sbjct: 394 GLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKM 453

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV----------------- 310
           D FT   ++  LCK ++  EA  +     +RG+VPD V Y TV                 
Sbjct: 454 DTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLW 513

Query: 311 ------------------IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
                             I GL  MG L +A     E++  GL+P++ TYN +IH YC+ 
Sbjct: 514 DEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKE 573

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            +LE+A + H +M++  +    VT NTL+ GLCL+GR ++A  LFE   +KG   DVITY
Sbjct: 574 GDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITY 633

Query: 413 NTLIQGYCKEGKI 425
           NTLIQ  CK+  +
Sbjct: 634 NTLIQALCKDNDV 646



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 154/340 (45%), Gaps = 35/340 (10%)

Query: 94  QWLHS---HYGFSPDLVSCNVLFDSLVEA-----RAFKVAMDFLDSTGFSPNPNSLELYI 145
           Q LHS        P L + N +  +L  +     +A   A   L +    PN  +  L +
Sbjct: 157 QLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFNLLV 216

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
              C  G + +A    SK++  G+     T+N+                          L
Sbjct: 217 HTHCSKGTLADALSTLSKMQGFGLSPDAVTYNT--------------------------L 250

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + A C  G + E   LL ++ ++G+VP    +N L+S +       + ++++  M A   
Sbjct: 251 LNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGF 310

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDAR 324
            PD +TY  +  GLC++ K  EA+++ +++++ G V PD V Y T++    K     DA 
Sbjct: 311 EPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEQLGIVSPDVVTYNTLVDACFKCQRSSDAL 370

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM  KG+  +  T+N ++ G CR   LEEA    + M ++G     +TYNTLI   
Sbjct: 371 NLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVITYNTLIDAS 430

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           C  G   +A+ L +EM + G+  D  T NTL+   CKE +
Sbjct: 431 CKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKR 470



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 47/349 (13%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+ N L D+  + +    A++ L+     G   +  +  + ++ LC  G +EEA  
Sbjct: 347 SPDVVTYNTLVDACFKCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALG 406

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF---------C 210
               + E G+   + T+N+ +    K       + L  +++ SG  +  F         C
Sbjct: 407 RLEMMTEEGLTPDVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLC 466

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            + +  E  ELLR   + G VP+  ++  +++ + ++        L   M+ R   P   
Sbjct: 467 KEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMIKRKLTPSIS 526

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH------------------ 312
           TY  +I GL    K  EA    N+L E G VPD   Y  +IH                  
Sbjct: 527 TYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAYCKEGDLEKAFQFHNKM 586

Query: 313 -----------------GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
                            GLC  G L  A K++   + KG   +  TYN++I   C+ +++
Sbjct: 587 VENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKVDVITYNTLIQALCKDNDV 646

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           + A R   +M  +G      TYN L++ L   GR+ EA  +  ++ + G
Sbjct: 647 DTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKMLHKLNESG 695



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 84/338 (24%), Positives = 157/338 (46%), Gaps = 15/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D  + N L  +L + + ++ A + L +    GF P+  S    +    +    E A
Sbjct: 450 GLKMDTFTLNTLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPA 509

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR-TDLVWKLYHDLIESGY---------LIQ 207
            C + ++ +  +  SI T+N+ + G   + + T+ + KL ++L+E G          +I 
Sbjct: 510 LCLWDEMIKRKLTPSISTYNTLIKGLSTMGKLTEAIDKL-NELMEMGLVPDDTTYNIIIH 568

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A+C +G + + ++   +++E+   P+    N L++  C      +  +L  + V + +  
Sbjct: 569 AYCKEGDLEKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVEKGKKV 628

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I  LCK      A R F D++ RG  PD   Y  ++  L + G   +A+KM 
Sbjct: 629 DVITYNTLIQALCKDNDVDTALRFFADMEVRGLQPDVFTYNVLLSALSEAGRSVEAQKML 688

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK-RLHKEMLDKGYGETTVTYNTLIAGLCL 386
            ++   G L   + Y S+      ++  ++ + +   E +    G+   +YN  I  LC+
Sbjct: 689 HKLNESGKLYGRFFYPSIKSSVEAVETGKDPEVKSDIESVGNTQGDDQESYNKYIKELCI 748

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            G+  EA  + +EM QKG+  D  TY TL++G  K  K
Sbjct: 749 GGQLKEAKAVLDEMMQKGMSVDNSTYITLMEGLIKRQK 786



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 90/200 (45%), Gaps = 9/200 (4%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKS-----RKR 285
           P +   +  +S +   +     ++LLH+   R    P       V++ L +S     +  
Sbjct: 134 PTSALADAALSTYARLRLPHLAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQAS 193

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
           L+A+     L+     P+   +  ++H  C  G L DA     +M   GL P+  TYN++
Sbjct: 194 LDAFHSLIALRLH---PNHYTFNLLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTL 250

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           ++ +CR   L EA+ L   M  +G   T  TYNTL++     G   +A  + E M   G 
Sbjct: 251 LNAHCRKGMLGEARTLLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGF 310

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             D+ TYN L  G C+ GK+
Sbjct: 311 EPDLWTYNVLAAGLCQAGKV 330


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 170/338 (50%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G + ++ S NVL + L        A+  +      G  P+  +    I  LC  G I+E
Sbjct: 125 FGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKE 184

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   F+++   G   ++ ++N+ + G  K   T +  +++          +++    +I 
Sbjct: 185 AVGLFNEMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIID 244

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C D  V+E  E L ++++ G+ P+   +N ++  FC        + L   MV RN  P
Sbjct: 245 SLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMP 304

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  +++GLCK     EA  V   + E+G  P+   Y  ++ G C    + +A K+ 
Sbjct: 305 DTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVL 364

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI KG  PN  +YN +I+GYC+   + EAKRL  EM +K     TVTY+TL+ GLC  
Sbjct: 365 GIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQV 424

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR  EA +LF+EM   G+  D++ Y+ L+ G+CK G +
Sbjct: 425 GRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHL 462



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 165/333 (49%), Gaps = 12/333 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V       S+ + + +  A+     +D  G + N  SL + I CLC    ++ A   
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G+     T+N+ + G     +      L+++++ SG+         +I   C 
Sbjct: 154 MGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCK 213

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G       + R++ ++   P    +N +I   C+ +      E L  MV R   PD  T
Sbjct: 214 NGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVT 273

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++G C   +  EA R+F ++  R  +PDTV +  ++ GLCK G + +AR +   M 
Sbjct: 274 YNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMT 333

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN YTYN+++ GYC  + ++EA ++   M+ KG      +YN LI G C   R +
Sbjct: 334 EKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMN 393

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           EA  L  EM++K +  D +TY+TL+QG C+ G+
Sbjct: 394 EAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGR 426



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 171/347 (49%), Gaps = 30/347 (8%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L +  N ++++R F+ +  + G  P++V+ N + DSL + R    A++FL      G  P
Sbjct: 211 LCKNGNTIMAVRVFRKMEQNRG-KPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPP 269

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +    +   C  G + EA   F ++    V     T+N                   
Sbjct: 270 DVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFN------------------- 310

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+   C +G VSE   +   + E G  P    +N L+  +C         ++
Sbjct: 311 -------ILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKV 363

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M+ +  AP+  +Y  +ING CKS++  EA R+ +++ E+   PDTV Y+T++ GLC+
Sbjct: 364 LGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQ 423

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G   +A  ++ EM   GLLP+   Y+ ++ G+C+  +L+EA +L KEM ++      + 
Sbjct: 424 VGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIIL 483

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           Y  LI G+ + G+ + A  LF +++  GI  D+ TYN +I+G  KEG
Sbjct: 484 YTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEG 530



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/227 (32%), Positives = 115/227 (50%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++E G  + +     + S    L  Q+   G+     + N LI+  C   +      ++ 
Sbjct: 96  VVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMG 155

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M      PD  T+  +INGLC   K  EA  +FN++   G+ P+ + Y TVI+GLCK G
Sbjct: 156 KMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCKNG 215

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A +++ +M      PN  TYN++I   C+   + EA     EM+D+G     VTYN
Sbjct: 216 NTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYN 275

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T++ G C  G+ +EA  LF+EM  + +  D +T+N L+ G CKEG +
Sbjct: 276 TILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMV 322



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 97/194 (50%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F K +    +KK +     L + M       + ++   +IN LC+      A  V
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + G  PD + + T+I+GLC  G + +A  ++ EM+  G  PN  +YN++I+G C+
Sbjct: 154 MGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCK 213

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             N   A R+ ++M         VTYNT+I  LC     +EA     EM  +GI  DV+T
Sbjct: 214 NGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVT 273

Query: 412 YNTLIQGYCKEGKI 425
           YNT++ G+C  G++
Sbjct: 274 YNTILHGFCSLGQL 287



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%)

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P  V +   +  + K      A  +  +M   G+  N Y+ N +I+  CR+ +++ A  +
Sbjct: 94  PSVVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSV 153

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             +M   G     +T+NTLI GLC  G+  EA  LF EM   G   +VI+YNT+I G CK
Sbjct: 154 MGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLCK 213

Query: 422 EGKIV 426
            G  +
Sbjct: 214 NGNTI 218



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/192 (19%), Positives = 88/192 (45%), Gaps = 12/192 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S    +PD V+ + L   L +    + A++      S+G  P+  +  + +   C+ G +
Sbjct: 403 SEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHL 462

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           +EA     ++ E  +  +I  +   + G     + ++  +L+  L   G          +
Sbjct: 463 DEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVM 522

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+    +G   E YE  R++ +DG +P++ ++N +I  F + ++     +L+  MV +  
Sbjct: 523 IKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEMVGKRF 582

Query: 266 APDNFTYEEVIN 277
           + D+ T++ +++
Sbjct: 583 SADSSTFQMLLD 594


>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 623

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 181/382 (47%), Gaps = 31/382 (8%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------- 129
           R  L+ Q++ + ++ FF W+ +  G  P + +   L   L  ++ FK AM FL       
Sbjct: 96  RVLLRCQSDSISALTFFSWVKNDLGLQPSIQNYCFLVHILAWSKEFKEAMKFLTELIKLV 155

Query: 130 DSTGFSPN---------------PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
               F+ +               P   ++ ++     G+I+E F  F K+ E+G   S+ 
Sbjct: 156 KDCSFNEDVFQTLLFCCQDCNWDPVIFDMLVKAYVREGMIKEGFTTFRKIVEVGCVPSVI 215

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
           + N  L G +K++R D  W++Y ++   G          L   FC DG V +  + L ++
Sbjct: 216 SCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNILTHVFCQDGDVDKVNDFLERM 275

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
            E+G  P+   +N LIS +C K        L   M  RN  PD  +Y  ++NGLCK  K 
Sbjct: 276 EEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKV 335

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            EA+++F+ +  RG  PD V + T+I G CK G + ++R +  EMI  G+ P++ T   +
Sbjct: 336 REAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVL 395

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I GY +   +  A  L  E+   G   +T  Y+ L+  +C  GR   A  L + ++Q+G 
Sbjct: 396 IEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGY 455

Query: 406 FRDVITYNTLIQGYCKEGKIVN 427
              V  YN LI+  CK   I +
Sbjct: 456 VPGVEIYNKLIESLCKSDSIAD 477



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 183/411 (44%), Gaps = 18/411 (4%)

Query: 30  SIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK---QQNNV 86
           S E KE+ +  TE+ K V   +  +  + QTLL      N+ DP+ F   +K   ++  +
Sbjct: 138 SKEFKEAMKFLTELIKLVKDCSFNEDVF-QTLLFCCQDCNW-DPVIFDMLVKAYVREGMI 195

Query: 87  LLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLEL 143
                 F+ +    G  P ++SCN L + L++             +   G  PN  +  +
Sbjct: 196 KEGFTTFRKI-VEVGCVPSVISCNCLLNGLLKLNRIDQCWQVYKEMARVGIHPNSYTFNI 254

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------ 197
                C+ G +++      +++E G    I T+N+ +    +  R D  + LY       
Sbjct: 255 LTHVFCQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRN 314

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
              DL+    L+   C +GKV E ++L  +++  GL P+  +FN LI  +C++       
Sbjct: 315 VLPDLVSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESR 374

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LLH M+     PD  T + +I G  K  + + A  +  +L+  G    T +Y  ++  +
Sbjct: 375 SLLHEMIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSI 434

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C+ G    A+ +   +  +G +P    YN +I   C+ D++ +A  +  EM  +    + 
Sbjct: 435 CEEGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSA 494

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +TY  LI  LC   R+ EA  L EEM Q G+  D      L+  YCKE  I
Sbjct: 495 ITYKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDI 545



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/331 (21%), Positives = 127/331 (38%), Gaps = 47/331 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ N L            A      +      P+  S    +  LC+ G + EA
Sbjct: 279 GFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDLVSYTALMNGLCKEGKVREA 338

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
              F ++   G+   I ++N+ + G  K  +      L H++I SG              
Sbjct: 339 HQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHEMIGSGICPDKVTCQVLIEG 398

Query: 204 ------------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                         YL+ + C +G+      LL+++ + G VP 
Sbjct: 399 YRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGRPFAAKSLLQRISQRGYVPG 458

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +NKLI   C+  +      +   M  RN  P   TY+ +I  LC++ + +EA  +  
Sbjct: 459 VEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLME 518

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ + G +PD  +   ++H  CK   +G A  +      +  + +  +YN+++  YC   
Sbjct: 519 EMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVKTYCEDA 578

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +      L   ML  G+     T+  +I GL
Sbjct: 579 DATRLMELQDRMLKVGFAPNIQTFRQMIHGL 609



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 80/176 (45%), Gaps = 11/176 (6%)

Query: 118 EARAF--KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           E R F  K  +  +   G+ P        I+ LC+S  I +A    S++    +  S  T
Sbjct: 437 EGRPFAAKSLLQRISQRGYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAIT 496

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVL 226
           + + +    +  R+     L  ++++SG L         +  +C +  + +   LL+   
Sbjct: 497 YKALICCLCRTSRSMEAESLMEEMLQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFA 556

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           ++  + ++ ++N L+  +CE  +  R+ EL   M+    AP+  T+ ++I+GL K+
Sbjct: 557 KEFQIFDSESYNTLVKTYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGLWKA 612


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 170/339 (50%), Gaps = 17/339 (5%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
            G  PDL + N+L       RA              GF P+  ++   ++ +     I +A
Sbjct: 976  GIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDA 1035

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------DLIESGYLIQAF 209
               F ++ + G+ G  KT+   + G  K  +T L  KL+         D+   G +I A 
Sbjct: 1036 VQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGDVFTYGMIIDAL 1095

Query: 210  CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH---TMVARNRA 266
            C DG  +E  ++  +++  G++P+   ++ L+   C    FGR+ E L     M  R  +
Sbjct: 1096 CKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCR---FGRLKEALEFFKEMEGRGIS 1152

Query: 267  PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
             D +TY  +I+GL ++    E     N + +RG+ PD   +T +I GLCK G +G+A+++
Sbjct: 1153 ADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQI 1212

Query: 327  WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
               M HKG  P+  TYN++++G C +  LE+A +L + + D+G      +YN LI G C 
Sbjct: 1213 LELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCK 1272

Query: 387  HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + DEA+  FEEM  KG+    +TYNTLI   C+ G++
Sbjct: 1273 DQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRV 1311



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 160/331 (48%), Gaps = 12/331 (3%)

Query: 105  DLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
            D+ +  ++ D+L +      A+D        G  P+       +  LC  G ++EA   F
Sbjct: 1084 DVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 1143

Query: 162  SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
             +++  G+   + T+NS + G  +      V    + +++ G+         LI   C +
Sbjct: 1144 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 1203

Query: 213  GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            GKV E  ++L  +   G  P+   +N L++  C        ++L  ++  R    + F+Y
Sbjct: 1204 GKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 1263

Query: 273  EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
              +ING CK +K  EA+R F +++ +G  P TV Y T+I  LC+ G +  A+K++ EM  
Sbjct: 1264 NILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT 1323

Query: 333  KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
             G      TY  ++ G C+  +LEEA  L + +    +      ++ L+ G+C  G+ +E
Sbjct: 1324 CGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEE 1383

Query: 393  AYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A+  F+E+++ G+  D I YN LI G C +G
Sbjct: 1384 AWKQFDEISKNGLEPDTIAYNILINGLCNKG 1414



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 155/340 (45%), Gaps = 13/340 (3%)

Query: 89   SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
            ++ FF+ +    G S D+ + N L   L  A  +K    FL+     GFSP+  +  + I
Sbjct: 1139 ALEFFKEMEGR-GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 1197

Query: 146  QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              LC+ G + EA      ++  G    I T+N+ + G   + + +   KL+  L + G  
Sbjct: 1198 DGLCKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK 1257

Query: 205  --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                    LI  +C D K+ E +    ++   GL P    +N LI   C+        +L
Sbjct: 1258 LNVFSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 1317

Query: 257  LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
               M    +     TY  +++GLCK+    EA  +F  +K+  + P+  +++ ++ G+C+
Sbjct: 1318 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCR 1377

Query: 317  MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
             G L +A K + E+   GL P+   YN +I+G C    L EA +L  +M +KG    ++T
Sbjct: 1378 AGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSIT 1437

Query: 377  YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            +N +I  L       EA  L EEM  +    D    + L+
Sbjct: 1438 FNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 108/256 (42%), Gaps = 34/256 (13%)

Query: 204  YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +L+ +    G  S  + + R++ + G+ P+    N LI   C  +  G    +    + R
Sbjct: 951  HLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCCCSLRAVGCGFGVFGGFLKR 1010

Query: 264  NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM------ 317
               PD  T   ++ G+       +A ++F+++ ++G + D   Y  +I+GLCK       
Sbjct: 1011 GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLA 1070

Query: 318  ----------------------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
                                        G   +A  M+ EMI  G+LP+   Y+S++ G 
Sbjct: 1071 IKLHEKMKGNCKGDVFTYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL 1130

Query: 350  CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            CR   L+EA    KEM  +G      TYN+LI GL   G   E       M  +G   D 
Sbjct: 1131 CRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDA 1190

Query: 410  ITYNTLIQGYCKEGKI 425
             T+  LI G CKEGK+
Sbjct: 1191 FTFTILIDGLCKEGKV 1206



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 1/212 (0%)

Query: 214  KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
            K+++  +L  + L    +P    FN L++   +   +  V  +   +      PD +T  
Sbjct: 926  KLNDAIKLFDRSLCSEPMPCTDTFNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLN 985

Query: 274  EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
             +I+  C  R     + VF    +RG+ PD V  TT++ G+     + DA +++ EM  K
Sbjct: 986  ILIHCCCSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKK 1045

Query: 334  GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
            GLL +  TY  +I+G C+      A +LH++M     G+   TY  +I  LC  G T EA
Sbjct: 1046 GLLGDAKTYGILINGLCKARKTGLAIKLHEKMKGNCKGD-VFTYGMIIDALCKDGMTTEA 1104

Query: 394  YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +F EM   GI  DV+ Y++L+ G C+ G++
Sbjct: 1105 LDMFSEMIGAGILPDVVVYSSLMDGLCRFGRL 1136


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 172/338 (50%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P++ + N+L  +L        A  V  D +   G +PN  +    +   C +G ++ 
Sbjct: 149 GVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDA 208

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A      ++E GV  S+ T+N+ + G  K  R +   K++ ++   G          L+ 
Sbjct: 209 AERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVS 268

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G + E   +  ++ + G+VP+   F  LI   C   N  R   L+  M  R    
Sbjct: 269 GYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRM 328

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + FT+  +I+G C++    +A     +++E    P  V Y  +I+G CK+G + +AR++ 
Sbjct: 329 NEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELI 388

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  KG+ P+  TY++++ GYC+I + + A  L+++ML KG     +TY++LI GLC  
Sbjct: 389 HEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEE 448

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            R  +A  LFE+M Q G+  D  TY TLI G+CKEG +
Sbjct: 449 RRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNV 486



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 163/329 (49%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P LV+ N + + L +A   + A    D     G +P+  S    +   C++G + EA
Sbjct: 220 GVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEA 279

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++ + GV   + T+ S +    +    +    L   + E G          LI  
Sbjct: 280 LAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDG 339

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G + +    ++++ E  + P    +N LI+ +C+        EL+H M A+   PD
Sbjct: 340 FCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPD 399

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G CK      A+ +   + ++G VPD + Y+++I GLC+   LGDA +++ 
Sbjct: 400 VVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFE 459

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  GL P+E+TY ++I G+C+  N+++A  LH EM+ KG     VTY+ LI GL    
Sbjct: 460 KMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSA 519

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           RT EA  L  ++  +    D I Y  L+ 
Sbjct: 520 RTKEAQRLLFKLYYEDPVPDNIKYEALMH 548



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 167/356 (46%), Gaps = 27/356 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+   L  ++  A   + A+  +      G   N  +    I   C +G +
Sbjct: 287 AQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCRNGFL 346

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           ++A  A  +++E  +  S+  +N  + G  K+ R D   +L H         D++    +
Sbjct: 347 DDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTI 406

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +  +C  G     +EL R++L+ G+VP+   ++ LI   CE++  G   EL   M+    
Sbjct: 407 LSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGL 466

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FTY  +I+G CK     +A  + +++ ++G +PD V Y+ +I GL K     +A++
Sbjct: 467 QPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYSVLIDGLSKSARTKEAQR 526

Query: 326 MWFEMIHKGLLPNEYTYNSMIH---------------GYCRIDNLEEAKRLHKEMLDKGY 370
           + F++ ++  +P+   Y +++H               G+     + +A ++++ MLD+ +
Sbjct: 527 LLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHW 586

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                 Y+ LI G C  G   +A    +++ + G   +  +  +L++G  +EG  V
Sbjct: 587 KLDGSVYSVLIHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTV 642



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 108/198 (54%), Gaps = 2/198 (1%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P   A+N ++    +  +      LL +M+    AP+ +TY  ++  LC   +R EA
Sbjct: 115 GYAPSLLAYNAVLLALSDA-SLPSARRLLASMLRDGVAPNVYTYNILVRALCARGQREEA 173

Query: 289 YRVF-NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
             V  +D++  G  P+ V Y T++   C+ G +  A ++   M   G+ P+  T+N++++
Sbjct: 174 LGVVGDDMRGAGCAPNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVN 233

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G C+   +E+A+++  EM  +G     V+YNTL++G C  G   EA  +F EMAQKG+  
Sbjct: 234 GLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVP 293

Query: 408 DVITYNTLIQGYCKEGKI 425
           DV+T+ +LI   C+ G +
Sbjct: 294 DVVTFTSLIHAMCRAGNL 311


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 109/342 (31%), Positives = 171/342 (50%), Gaps = 17/342 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIE 155
           YGF   L+SCN L   LV+  +    M+F    +       N  S  + +  LC+ G + 
Sbjct: 114 YGFKLSLISCNPLLSGLVK-ESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLN 172

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK---LYHDLIESGY-------- 204
            A      +K  GV  ++ T+N+ + G  K+ R   ++K   +  +++  G         
Sbjct: 173 RAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYN 232

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI  FC D  VS    +  ++   GL P    +N LI+  C          L   MV+ 
Sbjct: 233 ILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSS 292

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  P+  T+  +ING CK++   EA  +FND++++G  P+ + YTT+I   CK G + DA
Sbjct: 293 DLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDA 352

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++  MI +G+ P   TYN +I G CR  +++ A+ L  EM+ K      VTYN LI  
Sbjct: 353 FALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDS 412

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC  G + +A  L +EM +KG+    +TYNTL+ GYC+EG +
Sbjct: 413 LCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNL 454



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 176/384 (45%), Gaps = 33/384 (8%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS--- 131
             ++ L    +  L +R+F W    +  S  L     + +SL   + +     FLD    
Sbjct: 1   LLQQLLNSGADPELILRYFTWSQKEFKLSHSLELTFRILNSLAHTKKYSKIRSFLDKFVK 60

Query: 132 ----------------TGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
                           +G S   NS+  ++ +     +  I   F AF +  + G   S+
Sbjct: 61  YEKDYSVSAIFHAISMSGDSFCVNSILADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSL 120

Query: 174 KTWNSALLGCIK---------IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
            + N  L G +K         + R  +  K+  ++I    ++   C  GK++   +++  
Sbjct: 121 ISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIED 180

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRV---SELLHTMVARNRAPDNFTYEEVINGLCK 281
           +   G+ P    +N LI  +C+    G++     +L  MVA+   P+  TY  +I+G CK
Sbjct: 181 MKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCK 240

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
                 A RVF +++ +G  P+ V Y  +I+GLC  G + +A  +  +M+   L PN  T
Sbjct: 241 DENVSGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVT 300

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           +N +I+G+C+   + EA  L  +M  +G     +TY TLI   C  GR ++A+ L+  M 
Sbjct: 301 HNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMI 360

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
            +GIF +V TYN LI G C++G +
Sbjct: 361 DRGIFPEVSTYNCLIAGLCRKGDV 384



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 163/369 (44%), Gaps = 50/369 (13%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           +++S N++ + L +      A D ++     G SPN  +    I   C+ G I + + A 
Sbjct: 154 NVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKAD 213

Query: 162 SKLKEM---GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
           + LKEM   G+  +  T+N  + G  K +      +++ ++   G          LI   
Sbjct: 214 AILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGLRPNVVTYNILINGL 273

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+DGKV E   L  Q++   L P     N LI+ FC+ K       L + M  +   P+ 
Sbjct: 274 CSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNA 333

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR----- 324
            TY  +I+  CK  +  +A+ ++N + +RG  P+   Y  +I GLC+ G +  AR     
Sbjct: 334 MTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNE 393

Query: 325 ------------------------------KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
                                         K+  EM  KGL P+  TYN+++ GYCR  N
Sbjct: 394 MVSKKLSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGN 453

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L  A  +   M  KG     VT+N LI G CL GR ++A  L  EM ++G+  +  TY  
Sbjct: 454 LRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEI 513

Query: 415 LIQGYCKEG 423
           + +   ++G
Sbjct: 514 IKEEMMEKG 522



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/234 (25%), Positives = 113/234 (48%), Gaps = 14/234 (5%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             P++V+ NVL +   + +    A++    ++  G  PN  +    I   C+ G +E+AF
Sbjct: 294 LEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAF 353

Query: 159 CAFSKLKEMGVFGSIKTWNSALLG-CIKID-------RTDLVWK-LYHDLIESGYLIQAF 209
             ++ + + G+F  + T+N  + G C K D         ++V K L  D++    LI + 
Sbjct: 354 ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSL 413

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G+  +  +LL ++ E GL P +  +N L+  +C + N  R + ++ T + R     N
Sbjct: 414 CKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNL-RAALIVRTRMERKGKQAN 472

Query: 270 F-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
             T+  +I G C   +  +A  + N++ ERG VP+   Y  +   + + G++ D
Sbjct: 473 VVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYEIIKEEMMEKGFVPD 526


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 162/336 (48%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY--IQCLCESGLIEEAF 158
           G SPD V  N +   L +AR    AM   D        N    Y  I  LC++ L++EA 
Sbjct: 41  GLSPDPVELNTILAELCDARDTTTAMALFDKMAELGAVNHTTYYNLIHPLCKARLLDEAM 100

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------DLIESGYLIQAFC 210
                +K  G+       N  + G  +  R      +Y         D +    L+    
Sbjct: 101 GLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLS 160

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G++ +  ++L++++    VP+NT    ++   C         EL+  M+ R  A +  
Sbjct: 161 KAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAI 220

Query: 271 TYEEVINGLCKSRKRLEAYR-VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           TY  +++GLCK  +  EA   +  ++  RG+ PD V Y+TVI GLCK G L DA  ++ E
Sbjct: 221 TYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEE 280

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M      P   TYNS+I GYCR  +++EA RL  +M+D       +TY TL++  C  GR
Sbjct: 281 M---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGR 337

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            D+AY LF++M    +  DV+T+ +L+ G C EG++
Sbjct: 338 LDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRM 373



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 158/336 (47%), Gaps = 18/336 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++   L   L +A   + A+  L    S    P+  +L + +Q LC    +++A   
Sbjct: 147 PDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 206

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY----------HDLIESGYLIQAFC 210
             ++   G+  +  T+++ + G  K +R D    L            D++    +I   C
Sbjct: 207 VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLC 266

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G++ +  ++  ++      P    +N LI  +C   +      LL  MV  N APD  
Sbjct: 267 KAGRLRDAVDIFEEM---SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVI 323

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +++  CK  +  +AY +F  +      PD V +T+++ GLC  G + DA ++  E+
Sbjct: 324 TYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEI 383

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             +G  P  YTYN ++ GYC+ + + +A+ L  +   +G+   TVTYN L+AG C  GRT
Sbjct: 384 TRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRT 443

Query: 391 DEAYHLFEEMAQKG--IFRDVITYNTLIQGYCKEGK 424
           D+A    +++  +G      V  Y  ++   C++G+
Sbjct: 444 DQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGR 479



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 158/342 (46%), Gaps = 18/342 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLI 154
           H G + + ++ + L D L +      A+  L       GF+P+  +    I  LC++G +
Sbjct: 212 HRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRL 271

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
            +A   F   +EM    +  T+NS + G  +    D   +L           D+I    L
Sbjct: 272 RDAVDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTL 328

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + AFC  G++ + YEL +Q++ + L P+   F  L+   C +       ELL  +  R  
Sbjct: 329 MSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGC 388

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P  +TY  V++G CKS +  +A  +  D + RG+VP+TV Y  ++ G C+ G    A +
Sbjct: 389 PPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQ 448

Query: 326 MWFEM-IHKGLLPNEYT-YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              ++    G  P     Y  ++   CR    ++A + ++EM+ +GY     T+ T++  
Sbjct: 449 YLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFA 508

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC   +  +A+ L EEM + G      T + ++  YC+ G I
Sbjct: 509 LCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMI 550



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 146/311 (46%), Gaps = 11/311 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           GF+PD+V+ + + D L +A   + A+D  +    +P   +    I   C +G ++EA   
Sbjct: 250 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRL 309

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
             K+ +      + T+ + +    K+ R D  ++L+          D++    L+   C 
Sbjct: 310 LGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCG 369

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G++ +  ELL ++   G  P    +N ++  +C+     +  EL+    +R   P+  T
Sbjct: 370 EGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVT 429

Query: 272 YEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFE 329
           Y  ++ G C++ +  +A +  + L  E G  P +V MY  ++  LC+ G   DA + + E
Sbjct: 430 YNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEE 489

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           MI +G +P   T+ +++   C+    ++A  L +EM+  G+     T + +++  C  G 
Sbjct: 490 MIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGM 549

Query: 390 TDEAYHLFEEM 400
             +A  L  E+
Sbjct: 550 IQKADELASEL 560



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/204 (31%), Positives = 107/204 (52%), Gaps = 2/204 (0%)

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G  LL ++ + GL P+    N +++  C+ ++      L   M A   A ++ TY  +I+
Sbjct: 30  GPLLLDEIRDRGLSPDPVELNTILAELCDARDTTTAMALFDKM-AELGAVNHTTYYNLIH 88

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK+R   EA  +  D+K RG  P T+++  VI GLC+ G L  A  ++ +M +    P
Sbjct: 89  PLCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQM-NDAHPP 147

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  ++HG  +   L +A ++ +EM+   +     T   ++  LCL  R D+A  L 
Sbjct: 148 DFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELV 207

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
           EEM  +G+  + ITY+ L+ G CK
Sbjct: 208 EEMLHRGMAANAITYSALVDGLCK 231



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/219 (20%), Positives = 90/219 (41%), Gaps = 15/219 (6%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
            FQ + ++   SPD+V+   L D L      + A++ L+     G  P   +    +   
Sbjct: 344 LFQQMVANK-LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 402

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C+S  + +A    +  +  G   +  T+N  + GC +  RTD   +    L   G     
Sbjct: 403 CKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPT 462

Query: 204 ------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  ++ A C DG+  +  +   ++++ G VP    F  ++   C+     +  ELL
Sbjct: 463 SVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELL 522

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M+     P   T + V++  C++    +A  + ++L+
Sbjct: 523 EEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 561



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%)

Query: 297 ERGYVPDTVMYTTVIHGL---CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           + GY  D+  +  V+ GL    K+  LG    +  E+  +GL P+    N+++   C   
Sbjct: 3   DAGYPSDSSTFAVVLRGLHASAKLRHLGPL--LLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +   A  L  +M + G    T  YN LI  LC     DEA  L  +M  +G+    + +N
Sbjct: 61  DTTTAMALFDKMAELGAVNHTTYYN-LIHPLCKARLLDEAMGLLLDMKSRGMNPGTLLHN 119

Query: 414 TLIQGYCKEGKI 425
            +I G C+ G++
Sbjct: 120 VVIGGLCRAGRL 131


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  181 bits (458), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 17/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+   N +   L +A   + A  +L      G  P+  +   +I    ++G + EA
Sbjct: 414 GVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEA 473

Query: 158 FCAFSKLKEMGVF-----------GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
              F ++ + G+            G  K  N  L+  + I R      +  D+      I
Sbjct: 474 AKYFDEMLDHGLMPNNPLYTVLINGHFKAGN--LMEALSIFRHLHALGVLPDVQTCSAFI 531

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
                +G+V E  ++  ++ E GLVP+   ++ LIS FC++    +  EL   M  +  A
Sbjct: 532 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 591

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+ F Y  +++GLCKS     A ++F+ + E+G  PD+V Y+T+I G CK   + +A  +
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM  KG+ P+ + YN+++HG C+  ++E+A  L +EML KG+  TT+++NTLI G C 
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCK 710

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  EA  LF+EM  K I  D +TY T+I  +CK GK+
Sbjct: 711 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM 749



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 178/350 (50%), Gaps = 14/350 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           + ++F  +  H G  P+     VL +   +A     A+     L + G  P+  +   +I
Sbjct: 473 AAKYFDEMLDH-GLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFI 531

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             L ++G ++EA   FS+LKE G+   + T++S + G  K    +  ++L+ ++   G  
Sbjct: 532 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 591

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+   C  G +    +L   + E GL P++  ++ +I  +C+ +N      L
Sbjct: 592 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 651

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            H M ++   P +F Y  +++G CK     +A  +F ++ ++G+   T+ + T+I G CK
Sbjct: 652 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCK 710

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A +++ EMI K ++P+  TY ++I  +C+   +EEA  L KEM ++     TVT
Sbjct: 711 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVT 770

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           Y +L+ G    G++ E + LFE+M  KG+  D +TY  +I  +CKE  +V
Sbjct: 771 YTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV 820



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 160/335 (47%), Gaps = 14/335 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  VS   + + L   +   +A   L+    +G  PN       I      G IEEA   
Sbjct: 347 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRL 406

Query: 161 FSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVW------KLYHDLIESGYLIQAFC 210
              +   GV   I  +N A++ C+    K++             L  D +  G  I  + 
Sbjct: 407 LDGMSCSGVAPDIFCYN-AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYS 465

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK++E  +   ++L+ GL+P N  +  LI+   +  N      +   + A    PD  
Sbjct: 466 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQ 525

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T    I+GL K+ +  EA +VF++LKE+G VPD   Y+++I G CK G +  A ++  EM
Sbjct: 526 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 585

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG+ PN + YN+++ G C+  +++ A++L   M +KG    +VTY+T+I G C     
Sbjct: 586 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENV 645

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA+ LF EM  KG+      YN L+ G CKEG +
Sbjct: 646 AEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 680



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 176/362 (48%), Gaps = 14/362 (3%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--- 132
           F   L +   V  +++ F  L    G  PD+ + + L     +    + A +  D     
Sbjct: 530 FIHGLLKNGRVQEALKVFSELKEK-GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK 588

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +PN       +  LC+SG I+ A   F  + E G+     T+++ + G  K +     
Sbjct: 589 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 648

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L+H++   G          L+   C +G + +   L R++L+ G      +FN LI  
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDG 707

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+       S+L   M+A+   PD+ TY  VI+  CK+ K  EA  +F +++ER  + D
Sbjct: 708 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 767

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           TV YT++++G  K+G   +   ++ +M+ KG+ P+E TY  +I+ +C+ DNL EA +L  
Sbjct: 768 TVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRD 827

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E++ KG       ++ LI  LC      EA  L +EM + G+   +   +TL++ + + G
Sbjct: 828 EVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAG 887

Query: 424 KI 425
           K+
Sbjct: 888 KM 889



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 10/312 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
            RA ++ +D ++     P+  S    I  LC    +  A     K+   G+  ++  +++
Sbjct: 331 GRALEL-LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYST 389

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND---------GKVSEGYELLRQVLEDG 229
            ++G     R +   +L   +  SG     FC +         GK+ E    L ++   G
Sbjct: 390 LIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 449

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           L P+   F   I  + +       ++    M+     P+N  Y  +ING  K+   +EA 
Sbjct: 450 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 509

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F  L   G +PD    +  IHGL K G + +A K++ E+  KGL+P+ +TY+S+I G+
Sbjct: 510 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 569

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   +E+A  LH EM  KG       YN L+ GLC  G    A  LF+ M +KG+  D 
Sbjct: 570 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 629

Query: 410 ITYNTLIQGYCK 421
           +TY+T+I GYCK
Sbjct: 630 VTYSTMIDGYCK 641



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/379 (25%), Positives = 165/379 (43%), Gaps = 42/379 (11%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE-----------ARAFKVA----- 125
             +++L S+ F  W  ++ G SP      V+FD L++           A  F VA     
Sbjct: 136 SSSSILDSVLF--WFRNYGGSSP------VVFDILIDSYKRMGMLDEAANVFFVAKNDSI 187

Query: 126 ---------MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
                    +  +   G  PN  +  +    LC +  + EA   F ++++ G+       
Sbjct: 188 LISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNAC 247

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLE 227
           ++ + G ++    D V ++   ++  G          LI   C  GK+ +  E+L+ ++ 
Sbjct: 248 SALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMIT 307

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            G  P +  F  LI  +C + N GR  ELL  M  RN  P   +Y  +INGLC  +    
Sbjct: 308 LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSL 367

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A ++   +   G  P+ V+Y+T+I G    G + +AR++   M   G+ P+ + YN++I 
Sbjct: 368 ANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIIS 427

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
              +   +EEA     E+  +G     VT+   I G    G+  EA   F+EM   G+  
Sbjct: 428 CLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMP 487

Query: 408 DVITYNTLIQGYCKEGKIV 426
           +   Y  LI G+ K G ++
Sbjct: 488 NNPLYTVLINGHFKAGNLM 506



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 165/396 (41%), Gaps = 49/396 (12%)

Query: 79  FLKQQNNVLLSIRFFQWLHS--HYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTG 133
           F+ + +++L+S+     L S    G  P+  +  ++   L  A+     K+  + +  TG
Sbjct: 180 FVAKNDSILISLIRCNSLRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTG 239

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             P+ N+    I      G I+E       +   G+  ++ T+N  + G  K  + +   
Sbjct: 240 LKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAA 299

Query: 194 KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++   +I  G          LI+ +C +  +    ELL ++ +  LVP   ++  +I+  
Sbjct: 300 EILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGL 359

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C  K+    ++LL  M      P+   Y  +I G     +  EA R+ + +   G  PD 
Sbjct: 360 CHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDI 419

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y  +I  L K G + +A     E+  +GL P+  T+ + I GY +   + EA +   E
Sbjct: 420 FCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 479

Query: 365 MLDKGYGETTVTYNTL-----------------------------------IAGLCLHGR 389
           MLD G       Y  L                                   I GL  +GR
Sbjct: 480 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 539

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  +F E+ +KG+  DV TY++LI G+CK+G++
Sbjct: 540 VQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEV 575



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 76/347 (21%), Positives = 147/347 (42%), Gaps = 46/347 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++   N L D L ++   + A    D     G  P+  +    I   C+S  + EA
Sbjct: 589 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 648

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAF 209
           F  F ++   GV      +N+ + GC K    +    L+ ++++ G+        LI  +
Sbjct: 649 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 708

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-----EKKNF-------------- 250
           C   K+ E  +L ++++   ++P++  +  +I   C     E+ N               
Sbjct: 709 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 768

Query: 251 -------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
                        G+ SE   L   MVA+   PD  TY  VI   CK    +EA+++ ++
Sbjct: 769 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 828

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +  +G +    ++  +I  LCK   L +A K+  EM   GL P+    ++++  +     
Sbjct: 829 VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGK 888

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           ++EA R+ + +   G    T T   L+ G      +++A +L +++ 
Sbjct: 889 MDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ NVL D+   A     A+  +DS    G  P   +    ++ LC+    ++A   
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEV 249

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  + +  V   ++++N  + G  ++   +   K Y ++ + G          LI  F  
Sbjct: 250 FRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFST 309

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+      LR++   GLVP+   +  +I  FC   +      +   MV     PD  T
Sbjct: 310 RGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVT 369

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLCK  + L+A  + N++KERG  PD   +TT+IHG C+ G    A +++  ++
Sbjct: 370 YNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLL 429

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           H+ L P+   YNS+I G CR  +L +A  L  +M  +      VTY+ LI   C  G+ +
Sbjct: 430 HQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVE 489

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA+   +EM  KG   +++TYN++I+GYC+ G +
Sbjct: 490 EAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNV 523



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 185/407 (45%), Gaps = 33/407 (8%)

Query: 40  YTEIAKQVCKITRTKPRWEQ-------TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           +  + K +CK  R     E        ++  D+ SFN     F R        V  +++F
Sbjct: 230 FNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCR-----VGEVEEAMKF 284

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF-------LDSTGFSPNPNSLELYI 145
           ++ +    G +PD+VS    F  L+   + +  MD        +   G  P+     + I
Sbjct: 285 YKEMQQR-GVTPDVVS----FSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVI 339

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C +G + EA     ++  +G    + T+N+ L G  K  R     +L +++ E G  
Sbjct: 340 GGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVT 399

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C DG   +  +L   +L   L P+  A+N LI   C K +  + +EL
Sbjct: 400 PDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANEL 459

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M AR   P++ TY  +I+  C+  +  EA+   +++  +G +P+ + Y ++I G C+
Sbjct: 460 WDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCR 519

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +   ++   +M+   +LP+  T+N++IHGY + +N+  A  +   M  +      VT
Sbjct: 520 SGNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVT 579

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           YN +I G    G  +EA  +F++M   GI  D  TY +LI G+   G
Sbjct: 580 YNMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAG 626



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/246 (30%), Positives = 123/246 (50%), Gaps = 6/246 (2%)

Query: 184 IKIDRTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           ++ D+ D V        ++ D++    LI A    G V     L+  +   GL P    F
Sbjct: 171 LEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTF 230

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N ++   C+ + F +  E+   M   + APD  ++  +I G C+  +  EA + + ++++
Sbjct: 231 NSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQ 290

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG  PD V ++ +I      G +  A     EM   GL+P+   Y  +I G+CR  ++ E
Sbjct: 291 RGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSE 350

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A R+  EM+  G     VTYNTL+ GLC   R  +A  L  EM ++G+  D+ T+ TLI 
Sbjct: 351 ALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIH 410

Query: 418 GYCKEG 423
           GYC++G
Sbjct: 411 GYCRDG 416



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 137/283 (48%), Gaps = 12/283 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L + L +      A + L+     G +P+  +    I   C  G  E+A
Sbjct: 362 GCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKA 421

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKID--RTDLVW------KLYHDLIESGYLIQA 208
              F  L    +   +  +NS + G C K D  + + +W      +++ + +    LI +
Sbjct: 422 LQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDS 481

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V E +  L +++  G +P    +N +I  +C   N  +  + L  M+  N  PD
Sbjct: 482 HCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKMMQDNILPD 541

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+G  K      A+ VFN +++    PD V Y  +I+G  + G + +A +++ 
Sbjct: 542 LITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMIINGFSEQGNMEEAGRVFK 601

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           +M   G+ P+ YTY S+I+G+    N +EA +LH EM+ +G+ 
Sbjct: 602 KMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGFA 644



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 73/302 (24%), Positives = 134/302 (44%), Gaps = 9/302 (2%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P P   +L I+   +S    EAF AF  L +  V       N+ L    +     L  +
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAALSRAGWPHLAEE 143

Query: 195 LYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
            Y  ++ S           ++ ++C   +  +   ++ ++ +  + P+    N LI    
Sbjct: 144 AYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              +      L+ +M  +   P   T+  V+ GLCK R+  +A  VF  + +    PD  
Sbjct: 204 RAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVR 263

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +  +I G C++G + +A K + EM  +G+ P+  +++ +I  +     ++ A    +EM
Sbjct: 264 SFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREM 323

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G     V Y  +I G C  G   EA  + +EM   G   DV+TYNTL+ G CK+ ++
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRL 383

Query: 426 VN 427
           ++
Sbjct: 384 LD 385



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/244 (25%), Positives = 107/244 (43%), Gaps = 29/244 (11%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H    PD+V+ N L D +        A +  D   +    PN  +  + I   CE G +E
Sbjct: 430 HQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVE 489

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EAF    ++   G   +I T+NS                          +I+ +C  G V
Sbjct: 490 EAFGFLDEMVSKGNLPNIMTYNS--------------------------IIKGYCRSGNV 523

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +G + L+++++D ++P+   FN LI  + +++N      + + M      PD  TY  +
Sbjct: 524 KKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYNMI 583

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ING  +     EA RVF  +   G  PD   Y ++I+G    G   +A ++  EM+H+G 
Sbjct: 584 INGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMHRGF 643

Query: 336 LPNE 339
            P++
Sbjct: 644 APDD 647



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/221 (23%), Positives = 93/221 (42%), Gaps = 36/221 (16%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           L+ R   ++   R  E++ +++A +  P    ++ +I    +SRK  EA+  F  L +  
Sbjct: 59  LLLRMSRRRGASR-REIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHR 117

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC--------- 350
                     ++  L + GW   A + +  ++      N YT N M+H YC         
Sbjct: 118 VPVPASASNALLAALSRAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKAD 177

Query: 351 --------------------------RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
                                     R  +++ A  L   M +KG     VT+N+++ GL
Sbjct: 178 TVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANKGLKPGIVTFNSVLKGL 237

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C H R D+A  +F  M Q  +  DV ++N LI G+C+ G++
Sbjct: 238 CKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 170/338 (50%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G + ++ S NVL + L        A+  L      G  P  ++    I  LC  G I+E
Sbjct: 117 FGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKE 176

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   F+++   G   ++ ++N+ + G  K   T +   ++          D++    +I 
Sbjct: 177 AVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIID 236

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C D  V++  E L ++L+ G+ P    +N ++  FC        + L   MV R+  P
Sbjct: 237 SLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMP 296

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T   +++GLCK     EA  VF  + E+G  P+   Y  ++ G C    + +A+K++
Sbjct: 297 DTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVF 356

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI +G  P  ++YN +I+G+C+   ++EAK L  EM  K     TVTY+TL+ GLC  
Sbjct: 357 EIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQF 416

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR  EA ++F+EM   G+  +++TY+ L+ G+CK G +
Sbjct: 417 GRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHL 454



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 159/305 (52%), Gaps = 9/305 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           +D  G + N  SL + I CLC    ++ A     K+ ++G+  +  T+N+ + G     +
Sbjct: 114 MDLFGVTHNVYSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGK 173

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                +L+++++  G+         +I   C  G  S   ++ +++ ++G  P+   +N 
Sbjct: 174 IKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNT 233

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +I   C+ +      E L  M+ R   P+ FTY  +++G C   +  EA R+F ++  R 
Sbjct: 234 IIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRD 293

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            +PDTV  T ++ GLCK G + +AR ++  M  KG+ PN  TYN+++ GYC    + EAK
Sbjct: 294 VMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAK 353

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           ++ + M+ +G      +YN LI G C   R DEA  L  EM  K +  D +TY+TL+QG 
Sbjct: 354 KVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGL 413

Query: 420 CKEGK 424
           C+ G+
Sbjct: 414 CQFGR 418



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 136/256 (53%), Gaps = 4/256 (1%)

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
           K +G F   K +++ +  C ++D    ++ + H++     LI   C    V     +L +
Sbjct: 93  KFLGSFAKKKQYSTVVSLCNQMD----LFGVTHNVYSLNVLINCLCRLNHVDFAVSILGK 148

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + + G+ P  + FN LI+  C +       EL + MV R   P+  +Y  +INGLCK+  
Sbjct: 149 MFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCKTGN 208

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A  VF  +++ G  PD V Y T+I  LCK   + DA +   EM+ +G+ PN +TYN 
Sbjct: 209 TSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNC 268

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+HG+C +  L EA RL KEM+ +     TVT   L+ GLC  G   EA  +FE M +KG
Sbjct: 269 MVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKG 328

Query: 405 IFRDVITYNTLIQGYC 420
           +  ++ TYN L+ GYC
Sbjct: 329 VEPNISTYNALMDGYC 344



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 169/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+++S N + + L +     +A+D    ++  G  P+  +    I  LC+  L+ +A
Sbjct: 188 GHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDA 247

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
               S++ + G+  ++ T+N  + G   + + +   +L+          D +    L+  
Sbjct: 248 MEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTILVDG 307

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G VSE   +   + E G+ P  + +N L+  +C ++      ++   M+ +  AP 
Sbjct: 308 LCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPG 367

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CKSR+  EA  +  ++  +   PDTV Y+T++ GLC+ G   +A  ++ 
Sbjct: 368 VHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFK 427

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   GLLPN  TY+ ++ G+C+  +L+EA +L K M +K      V +  LI G+ + G
Sbjct: 428 EMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAG 487

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + + A  LF ++   GI   + TY  +I+G  KEG
Sbjct: 488 KLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEG 522



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 96/194 (49%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F K +  F +KK +  V  L + M       + ++   +IN LC+      A  +
Sbjct: 86  PSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCLCRLNHVDFAVSI 145

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + G  P    +  +I+GLC  G + +A +++ EM+ +G  PN  +YN++I+G C+
Sbjct: 146 LGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNVISYNTIINGLCK 205

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             N   A  + K+M   G     VTYNT+I  LC     ++A     EM  +GI  +V T
Sbjct: 206 TGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFLSEMLDRGIPPNVFT 265

Query: 412 YNTLIQGYCKEGKI 425
           YN ++ G+C  G++
Sbjct: 266 YNCMVHGFCILGQL 279



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 62/233 (26%), Positives = 110/233 (47%), Gaps = 22/233 (9%)

Query: 216 SEGYELLRQVLEDGLVPENTAF---NKLISRFCEKK------NFGRVSE----------- 255
           +  + +L+Q +E G+ P +  F   + + +  C +K      N G VS            
Sbjct: 14  ASDFRILQQHMEMGIFPSSFLFFNHHHISTSACTRKPSLPQNNGGFVSNNSTNISIDDAL 73

Query: 256 -LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
              + MV  N  P    + + +    K ++      + N +   G   +      +I+ L
Sbjct: 74  ASFYRMVRMNPRPSVAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVLINCL 133

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C++  +  A  +  +M   G+ P   T+N++I+G C    ++EA  L  EM+ +G+    
Sbjct: 134 CRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMVRRGHEPNV 193

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           ++YNT+I GLC  G T  A  +F++M Q G   DV+TYNT+I   CK+ ++VN
Sbjct: 194 ISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKD-RLVN 245



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/191 (19%), Positives = 84/191 (43%), Gaps = 12/191 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H   +PD V+ + L   L +    K A++      S G  PN  +  + +   C+ G ++
Sbjct: 396 HKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLD 455

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           EA      ++E  +  +I      + G     + ++  +L+  L   G          +I
Sbjct: 456 EALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMI 515

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +    +G   E Y+L R++ +DG +P + ++N +I  F + ++      L+  MV +  +
Sbjct: 516 KGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFS 575

Query: 267 PDNFTYEEVIN 277
            +  T++ +++
Sbjct: 576 ANLSTFQMLLD 586


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 170/334 (50%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+++ +VL D+  +A     A++ L    S G +PN  +    I  LC+S    EA
Sbjct: 425 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEA 484

Query: 158 FCAFSKLK-EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFCN 211
           F  F  +  + G+     T+ + + G  +  R      L   + +         I     
Sbjct: 485 FQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSK 544

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G VS   ++  ++LE  LVP+   FN LI+  C+  NF + S L   MVA+N  PD  T
Sbjct: 545 LGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMT 604

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+GLCK+ +   A  + + +   G  P+ V Y  ++HGLCK G + +A +   EM+
Sbjct: 605 FGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMV 664

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G +P+  TY S+++  CR    ++A +L  E+   G+   TVTYN L+ GL   G+T+
Sbjct: 665 SSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGQTE 724

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  + EEM  KG   DV+TYNTLI   CK G +
Sbjct: 725 QAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDL 758



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/445 (27%), Positives = 204/445 (45%), Gaps = 69/445 (15%)

Query: 40   YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFR---EFLKQQNNVLLSIRFFQW 95
            Y  +   +C+ +RT    +  L+S++ SF ++ D + +    + L +      +I   + 
Sbjct: 675  YGSLVYALCRASRTDDALQ--LVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEE 732

Query: 96   LHSHYGFSPDLVSCNVLFDSLV------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLC 149
            +    G  PD+V+ N L DSL       EAR     M    S    PN  +  + I  LC
Sbjct: 733  MVGK-GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLC 791

Query: 150  ESGLIEEA---------------------------FCAFSKLKEMGVF------GSIK-- 174
            + G I+EA                            C  S + E          GS++  
Sbjct: 792  KVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVS 851

Query: 175  ----TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL 221
                T+++ + G  K  +TD    ++ D+I  GY         L+   C   K+   + +
Sbjct: 852  PDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAM 911

Query: 222  LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
            +  +++ G+ P+   ++ L+  FC+  +     ELLH M +R   P+  T+  +I+GLCK
Sbjct: 912  IESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCK 971

Query: 282  SRKRLEAYRVFNDLK-ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
            S +  EA+++F+D+  + G  PD + Y T+I GL + GW G A  +   M      P+ Y
Sbjct: 972  SDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMPD----PDTY 1027

Query: 341  TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
             +N  I+G  ++ ++  A  LH+ ML+       VT+N LIAG C  G  ++A  LFEEM
Sbjct: 1028 AFNCCINGLSKLGDVSRA--LHR-MLELELVPDKVTFNILIAGACKAGNFEQASALFEEM 1084

Query: 401  AQKGIFRDVITYNTLIQGYCKEGKI 425
              K +  DV+T+  LI G CK G++
Sbjct: 1085 VAKNLQPDVMTFGALIDGLCKAGQV 1109



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 148/296 (50%), Gaps = 14/296 (4%)

Query: 143 LYIQCLCESGLIEEAFCAF-SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           + +Q LC +G    A   F  ++   GV  +I T+N+ + G  K +      +L+ +L+E
Sbjct: 185 IVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVE 244

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+         LI + C  G + E   L   +     VP    ++ LI+  C+      
Sbjct: 245 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDE 304

Query: 253 VSELLHTMVAR--NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--YVPDTVMYT 308
             EL+  M  +  +  P+  TY   ++GLCK     EA  +   L++      PDTV ++
Sbjct: 305 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 364

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I GLCK G + +A  ++ +MI  G +PN  TYN++++G C+ D +E A  + + M+DK
Sbjct: 365 TLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 424

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G     +TY+ L+   C   R DEA  L   MA +G   +V+T+N++I G CK  +
Sbjct: 425 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDR 480



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 177/374 (47%), Gaps = 21/374 (5%)

Query: 69  NFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKV 124
           +F      R   K   +V  ++ FF+ + S      D    N++  SL  A    RA ++
Sbjct: 146 HFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSVADY---NIVLQSLCRAGETARALEI 202

Query: 125 AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
               +   G +P   +    I  LC+S  +      F +L E G    + T+N+ +    
Sbjct: 203 FRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLC 262

Query: 185 KIDRTDLVWKLYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDG--LVPE 233
           K    +   +L+ D+         +    LI   C  G++ E  EL++++      ++P 
Sbjct: 263 KAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPN 322

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
              +N  +   C++       EL+ ++   +   +PD  T+  +I+GLCK  +  EA  V
Sbjct: 323 IITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSV 382

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F+D+   GYVP+ + Y  +++GLCK   +  A  M   M+ KG+ P+  TY+ ++  +C+
Sbjct: 383 FDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCK 442

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVI 410
              ++EA  L   M  +G     VT+N++I GLC   R+ EA+ +F++MA K G+  D I
Sbjct: 443 ASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALKHGLVPDKI 502

Query: 411 TYNTLIQGYCKEGK 424
           TY TLI G  + G+
Sbjct: 503 TYCTLIDGLFRTGR 516



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 164/369 (44%), Gaps = 71/369 (19%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+++   L D L +A   + A D LD   + G  PN  +    +  LC+SG IEEA 
Sbjct: 598 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEA- 656

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
           C F  L+EM   G +                        D I  G L+ A C   +  + 
Sbjct: 657 CQF--LEEMVSSGCVP-----------------------DSITYGSLVYALCRASRTDDA 691

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            +L+ ++   G  P+   +N L+    +     +   +L  MV +   PD  TY  +I+ 
Sbjct: 692 LQLVSELKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDS 751

Query: 279 LCKSRKRLEAYRVFNDLKER---GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG- 334
           LCK+    EA R+  D+  R     VP+ V Y+ +I+GLCK+G + +AR++  EM+ K  
Sbjct: 752 LCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSC 811

Query: 335 -LLPNEYTYNSMIHGYCR-------------------------------IDNL------E 356
            +LPN  TYNS + G C+                               ID L      +
Sbjct: 812 DVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTD 871

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  +  +M+  GY    VTYN L+ GLC   + + A+ + E M  KG+  DVITY+ L+
Sbjct: 872 EACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLV 931

Query: 417 QGYCKEGKI 425
             +CK   +
Sbjct: 932 DAFCKASHV 940



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 173/355 (48%), Gaps = 21/355 (5%)

Query: 89   SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
            + +F + + S  G  PD ++   L  +L  A     A+     L S G+ P+  +  + +
Sbjct: 656  ACQFLEEMVSS-GCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILV 714

Query: 146  QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------ 199
              L +SG  E+A     ++   G    + T+N+ +    K    +   +L+ D+      
Sbjct: 715  DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSR 774

Query: 200  ------IESGYLIQAFCNDGKVSEGYELLRQVLEDG--LVPENTAFNKLISRFCEKKNFG 251
                  +    LI   C  G++ E  EL+++++     ++P    +N  +   C++    
Sbjct: 775  CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMA 834

Query: 252  RVSELLHTM--VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               EL+ ++   +   +PD  T+  +I+GLCK  +  EA  VF+D+   GYVP+ V Y  
Sbjct: 835  EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNV 894

Query: 310  VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            +++GLCK   +  A  M   M+ KG+ P+  TY+ ++  +C+  +++EA  L   M  +G
Sbjct: 895  LMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRG 954

Query: 370  YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEG 423
                 VT+N++I GLC   ++ EA+ +F++M  K G+  D ITY TLI G  + G
Sbjct: 955  CTPNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTG 1009



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 127/261 (48%), Gaps = 40/261 (15%)

Query: 205 LIQAFCNDGKVSEGYELLR-QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           ++Q+ C  G+ +   E+ R ++  DG+ P    +N +I+  C+    G   EL   +V R
Sbjct: 186 VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVER 245

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  TY  +I+ LCK+    EA R+  D+  R  VP+ V Y+ +I+GLCK+G + +A
Sbjct: 246 GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEA 305

Query: 324 RKMWFEMIHKG--LLPNEYTYNS------------------------------------- 344
           R++  EM  K   +LPN  TYNS                                     
Sbjct: 306 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 365

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G C+   ++EA  +  +M+  GY    +TYN L+ GLC   + + A+ + E M  KG
Sbjct: 366 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKG 425

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  DVITY+ L+  +CK  ++
Sbjct: 426 VTPDVITYSVLVDAFCKASRV 446



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 6/193 (3%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF--N 293
           +FNK ++   +  +  +  +L  + +     P++FTY  ++    K+   +E    F   
Sbjct: 113 SFNKYLNLLVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRR 172

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW-FEMIHKGLLPNEYTYNSMIHGYCRI 352
                  V D   Y  V+  LC+ G    A +++  EM   G+ P   TYN++I+G C+ 
Sbjct: 173 IRSSSRSVAD---YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKS 229

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           + L     L +E++++G+    VTYNTLI  LC  G  +EA  L  +M+ +    +V+TY
Sbjct: 230 NELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTY 289

Query: 413 NTLIQGYCKEGKI 425
           + LI G CK G+I
Sbjct: 290 SVLINGLCKVGRI 302


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 17/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+   N +   L +A   + A  +L      G  P+  +   +I    ++G + EA
Sbjct: 503 GVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEA 562

Query: 158 FCAFSKLKEMGVF-----------GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
              F ++ + G+            G  K  N  L+  + I R      +  D+      I
Sbjct: 563 AKYFDEMLDHGLMPNNPLYTVLINGHFKAGN--LMEALSIFRRLHALGVLPDVQTCSAFI 620

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
                +G+V E  ++  ++ E GLVP+   ++ LIS FC++    +  EL   M  +  A
Sbjct: 621 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 680

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+ F Y  +++GLCKS     A ++F+ + E+G  PD+V Y+T+I G CK   + +A  +
Sbjct: 681 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 740

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM  KG+ P+ + YN+++HG C+  ++E+A  L +EML KG+  TT+++NTLI G C 
Sbjct: 741 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCK 799

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  EA  LF+EM  K I  D +TY T+I  +CK GK+
Sbjct: 800 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM 838



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 178/350 (50%), Gaps = 14/350 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           + ++F  +  H G  P+     VL +   +A     A+     L + G  P+  +   +I
Sbjct: 562 AAKYFDEMLDH-GLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFI 620

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             L ++G ++EA   FS+LKE G+   + T++S + G  K    +  ++L+ ++   G  
Sbjct: 621 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 680

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+   C  G +    +L   + E GL P++  ++ +I  +C+ +N      L
Sbjct: 681 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 740

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            H M ++   P +F Y  +++G CK     +A  +F ++ ++G+   T+ + T+I G CK
Sbjct: 741 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCK 799

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A +++ EMI K ++P+  TY ++I  +C+   +EEA  L KEM ++     TVT
Sbjct: 800 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDTVT 859

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           Y +L+ G    G++ E + LFE+M  KG+  D +TY  +I  +CKE  +V
Sbjct: 860 YTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV 909



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 161/335 (48%), Gaps = 14/335 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  VS   + + L   +   +A   L+    +G  PN     + I      G IEEA   
Sbjct: 436 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRL 495

Query: 161 FSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVW------KLYHDLIESGYLIQAFC 210
              +   GV   I  +N A++ C+    K++             L  D +  G  I  + 
Sbjct: 496 LDGMSCSGVAPDIFCYN-AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYS 554

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK++E  +   ++L+ GL+P N  +  LI+   +  N      +   + A    PD  
Sbjct: 555 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQ 614

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T    I+GL K+ +  EA +VF++LKE+G VPD   Y+++I G CK G +  A ++  EM
Sbjct: 615 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 674

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG+ PN + YN+++ G C+  +++ A++L   M +KG    +VTY+T+I G C     
Sbjct: 675 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENV 734

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA+ LF EM  KG+      YN L+ G CKEG +
Sbjct: 735 AEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 769



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/362 (27%), Positives = 176/362 (48%), Gaps = 14/362 (3%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--- 132
           F   L +   V  +++ F  L    G  PD+ + + L     +    + A +  D     
Sbjct: 619 FIHGLLKNGRVQEALKVFSELKEK-GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK 677

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +PN       +  LC+SG I+ A   F  + E G+     T+++ + G  K +     
Sbjct: 678 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 737

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L+H++   G          L+   C +G + +   L R++L+ G      +FN LI  
Sbjct: 738 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDG 796

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+       S+L   M+A+   PD+ TY  VI+  CK+ K  EA  +F +++ER  + D
Sbjct: 797 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 856

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           TV YT++++G  K+G   +   ++ +M+ KG+ P+E TY  +I+ +C+ DNL EA +L  
Sbjct: 857 TVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRD 916

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E++ KG       ++ LI  LC      EA  L +EM + G+   +   NTL++ + + G
Sbjct: 917 EVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAG 976

Query: 424 KI 425
           K+
Sbjct: 977 KM 978



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 172/397 (43%), Gaps = 36/397 (9%)

Query: 57  WEQTLLSD-IPSFNFNDPLFFREFLKQQNNVLLSIR---FFQWLHSHYGFSPDLVSCNVL 112
           W+  ++S  IPS   N P   R  L  QN V    R   FF W  S  G    L S ++L
Sbjct: 56  WKTIMVSSHIPS-KLN-PDVIRAVL-HQNQVGDPKRLLDFFYWSQSQMGVPQFLDSFSIL 112

Query: 113 FDSLVEARAFKVA--------------MDFLDSTGF------SPNPNSLELYIQCLCESG 152
              L  +  F +A                 LDS  F        +P   ++ I      G
Sbjct: 113 AVQLCNSELFGLANGVLTQMIRTPYSSSSILDSVLFWFRNYGGSSPVVFDILIDSYKRMG 172

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------G 203
           +++EA   F   K   +  S+   NS L   +K    +L WK+Y+ ++++          
Sbjct: 173 MLDEAANVFFVAKNDSILISLIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYT 232

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           YL+ A C  G +     +L ++ E GL P    ++ +I   C+  +     EL  +M  +
Sbjct: 233 YLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSMGEK 292

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+ +TY  +  GLC++++  EA   F ++++ G  PD    + +I G  + G + + 
Sbjct: 293 GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 352

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++   M+  G+  N  TYN +IHG C+   +E+A  + K M+  G    + T+  LI G
Sbjct: 353 LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEG 412

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            C       A  L +EM ++ +    ++Y  +I G C
Sbjct: 413 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC 449



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 149/372 (40%), Gaps = 79/372 (21%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +  +    LC +  + EA   F ++++ G+       ++ + G ++    D V
Sbjct: 293 GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 352

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++   ++  G          LI   C  GK+ +  E+L+ ++  G  P +  F  LI  
Sbjct: 353 LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEG 412

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC----------------------- 280
           +C + N GR  ELL  M  RN  P   +Y  +INGLC                       
Sbjct: 413 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 472

Query: 281 -----------KSRKRL-EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                       S  R+ EA R+ + +   G  PD   Y  +I  L K G + +A     
Sbjct: 473 VVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 532

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL-------- 380
           E+  +GL P+  T+ + I GY +   + EA +   EMLD G       Y  L        
Sbjct: 533 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 592

Query: 381 ---------------------------IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
                                      I GL  +GR  EA  +F E+ +KG+  DV TY+
Sbjct: 593 NLMEALSIFRRLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYS 652

Query: 414 TLIQGYCKEGKI 425
           +LI G+CK+G++
Sbjct: 653 SLISGFCKQGEV 664



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/347 (22%), Positives = 147/347 (42%), Gaps = 46/347 (13%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
            G +P++   N L D L ++   + A    D     G  P+  +    I   C+S  + EA
Sbjct: 678  GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 737

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAF 209
            F  F ++   GV      +N+ + GC K    +    L+ ++++ G+        LI  +
Sbjct: 738  FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 797

Query: 210  CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-----EKKNF-------------- 250
            C   K+ E  +L ++++   ++P++  +  +I   C     E+ N               
Sbjct: 798  CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 857

Query: 251  -------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
                         G+ SE   L   MVA+   PD  TY  VI   CK    +EA+++ ++
Sbjct: 858  VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 917

Query: 295  LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
            +  +G +    ++  +I  LCK   L +A K+  EM   GL P+    N+++  +     
Sbjct: 918  VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGK 977

Query: 355  LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
            ++EA R+ + +   G    T T   L+ G      +++A +L +++ 
Sbjct: 978  MDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 1024


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/342 (30%), Positives = 172/342 (50%), Gaps = 17/342 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIE 155
           Y +   ++SCN L  +LV+   F   ++F    +     SPN  +    I  LC+ G + 
Sbjct: 189 YRYKLSVLSCNPLLSALVKENEFG-GVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLN 247

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK---LYHDLIES---------G 203
           +A      +K  G + ++ T+N+ + G  K+ R   ++K   +  +++E+          
Sbjct: 248 KAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFN 307

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI  FC D  +S   ++  ++   GL P    +N L++  C +        LL  M++ 
Sbjct: 308 VLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSS 367

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N  P+  TY  +ING CK +   EA  +F+++ ++G  P+ + + T++HG CK G + +A
Sbjct: 368 NLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEA 427

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +   M+ KG LPN  TYN +I G+CR   +EE K L  EM  +G    TVTYN LI+ 
Sbjct: 428 FLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISA 487

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C      +A  L +EM  KG+    +TYN L+ GYC EG +
Sbjct: 488 WCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNL 529



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 167/372 (44%), Gaps = 50/372 (13%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SP+L++ N + + L +      A D +D     GF PN  +    I   C+ G + + +
Sbjct: 226 ISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGKMY 285

Query: 159 CAFSKLKEM---GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A + LKEM    V  +  T+N  + G  K +      K++ ++   G          L+
Sbjct: 286 KADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSLV 345

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK------------------ 248
              CN+GK++E   LL ++L   L P    +N LI+ +C+KK                  
Sbjct: 346 NGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGLT 405

Query: 249 --------------NFGRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
                          FG++ E   L   M+ +   P+  TY  +I G C+  K  E   +
Sbjct: 406 PNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNL 465

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            N+++ RG   DTV Y  +I   C+      A ++  EM+ KGL P+  TYN +++GYC 
Sbjct: 466 LNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNILLNGYCM 525

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             NL  A  L K+M  +G     VTYN LI G C  G+ ++A  L  EM +KG+  +  T
Sbjct: 526 EGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKGLIPNRTT 585

Query: 412 YNTLIQGYCKEG 423
           Y  + +   ++G
Sbjct: 586 YEIIKEEMMEKG 597



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 123/288 (42%), Gaps = 48/288 (16%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNP 138
           +  N+  +++ F+ + S  G  P +V+ N L + L         KV +D + S+   PN 
Sbjct: 315 KDENLSAALKVFEEMQSQ-GLKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLKPNV 373

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+  L+EEA   F  + + G+  ++ T+N+ L G  K  + +  + L   
Sbjct: 374 ITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKV 433

Query: 199 LIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           ++E G+L         I  FC +GK+ E   LL ++   G+  +   +N LIS +CEKK 
Sbjct: 434 MLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKE 493

Query: 250 FGRVSELLHTMVARNRAPDNFTYE-----------------------------------E 274
             + + L+  M+ +   P + TY                                     
Sbjct: 494 PKKAARLIDEMLDKGLKPSHLTYNILLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNV 553

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +I G C+  K  +A  + N++ E+G +P+   Y  +   + + G+L D
Sbjct: 554 LIQGYCRKGKLEDANGLLNEMLEKGLIPNRTTYEIIKEEMMEKGFLPD 601


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 168/345 (48%), Gaps = 13/345 (3%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCE 150
            W+   +G  PD    N + + LV+    K   +A   +   G  P+ ++  + I+ LC 
Sbjct: 142 HWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCR 201

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------- 203
           +  +  A      +   G+    KT+ + + G I+    D   ++   ++E G       
Sbjct: 202 AHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVS 261

Query: 204 --YLIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
              ++  FC +G+V +    ++++  +DG  P+   FN L++  C+  +     E++  M
Sbjct: 262 VNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVM 321

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +     PD +TY  VI+GLCK  +  EA    + +  R   P+TV Y T+I  LCK   +
Sbjct: 322 LQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQV 381

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A ++   +  KG+LP+  T+NS+I G C   N   A  L +EM  KG      TYN L
Sbjct: 382 EEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNML 441

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I  LC  G+ DEA ++ ++M   G  R VITYNTLI G+CK  KI
Sbjct: 442 IDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKI 486



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 186/403 (46%), Gaps = 20/403 (4%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNF-NDPLFFREFLK---QQNNVLLSIRFFQW 95
           +  + K +C+  + +P     +L D+PS+    D   F   ++   ++ ++  ++R  + 
Sbjct: 192 FNVLIKALCRAHQLRPAI--LMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQ 249

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCES 151
           +   +G S   VS NV+     +    + A++F+    +  GF P+  +    +  LC++
Sbjct: 250 M-VEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKA 308

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--------- 202
           G ++ A      + + G    + T+NS + G  K+       +    +I           
Sbjct: 309 GHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTY 368

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI   C + +V E  EL R +   G++P+   FN LI   C  +N     EL   M +
Sbjct: 369 NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRS 428

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   PD FTY  +I+ LC   K  EA  +   ++  G     + Y T+I G CK   + +
Sbjct: 429 KGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIRE 488

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM   G+  N  TYN++I G C+   +E+A +L  +M+ +G      TYN+L+ 
Sbjct: 489 AEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLT 548

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             C  G   +A  + + M   G   D++TY TLI G CK G++
Sbjct: 549 HFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRV 591



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 164/348 (47%), Gaps = 12/348 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++ F Q + +  GF PD  + N L + L +A   K A++ +D     G+ P+  +    I
Sbjct: 278 ALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVI 337

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             LC+ G ++EA     ++       +  T+N+ +    K ++ +   +L   L   G L
Sbjct: 338 SGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGIL 397

Query: 206 ---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                    IQ  C         EL  ++   G  P+   +N LI   C K        +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M     A    TY  +I+G CK+ K  EA  +F++++  G   ++V Y T+I GLCK
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + DA ++  +MI +G  P+++TYNS++  +CR  ++++A  + + M   G     VT
Sbjct: 518 SRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVT 577

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           Y TLI+GLC  GR + A  L   +  KGI      YN +IQG  ++ K
Sbjct: 578 YGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRK 625



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 153/336 (45%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+ + N +   L +    K A++FLD   +   SPN  +    I  LC+   +EEA
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G+   + T+NS + G        +  +L+ ++   G          LI +
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ GK+ E   +L+Q+   G       +N LI  FC+        E+   M     + +
Sbjct: 445 LCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRN 504

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GLCKSR+  +A ++ + +   G  PD   Y +++   C+ G +  A  +  
Sbjct: 505 SVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQ 564

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  P+  TY ++I G C+   +E A +L + +  KG   T   YN +I GL    
Sbjct: 565 AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKR 624

Query: 389 RTDEAYHLFEEM-AQKGIFRDVITYNTLIQGYCKEG 423
           +T EA +LF EM  Q     D ++Y  + +G C  G
Sbjct: 625 KTTEAINLFREMLEQNEAAPDAVSYRIVFRGLCNGG 660



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/216 (27%), Positives = 104/216 (48%), Gaps = 6/216 (2%)

Query: 216 SEGYELLRQVLED----GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-NRAPDNF 270
           S  ++ +R++LED    G     + F  LI  + + +    +  ++H M+      PD  
Sbjct: 96  SGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEILGVVHWMIDDFGLKPDTH 155

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  ++N L               +   G  PD   +  +I  LC+   L  A  M  +M
Sbjct: 156 FYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDM 215

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              GL+P+E T+ +++ GY    +L+ A R+ ++M++ G   + V+ N ++ G C  GR 
Sbjct: 216 PSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRV 275

Query: 391 DEAYHLFEEMA-QKGIFRDVITYNTLIQGYCKEGKI 425
           ++A +  +EM+ Q G F D  T+NTL+ G CK G +
Sbjct: 276 EDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHV 311



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 75/163 (46%), Gaps = 1/163 (0%)

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N +P+   YEE++  L +S    +  ++  D+K  G    T  +  +I    +     + 
Sbjct: 78  NFSPEPALYEEILLRLGRSGSFDDMRKILEDMKNSGCEMGTSPFLILIESYAQFELQDEI 137

Query: 324 RKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
             +   MI   GL P+ + YN M++     +NL+  +  H +M   G      T+N LI 
Sbjct: 138 LGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNVLIK 197

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LC   +   A  + E+M   G+  D  T+ T++QGY +EG +
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDL 240


>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/349 (32%), Positives = 161/349 (46%), Gaps = 52/349 (14%)

Query: 130 DSTGFSPNPNSLELYIQCLCESGLIE--EAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
           D+   +P+   LE +++  C+SG I+  EAF  F+ L +M     I ++N+ L    KI 
Sbjct: 47  DTVSNAPDRGQLENFLKSNCKSGHIKRSEAFSVFNHLIDMQPTPPISSFNTLLGAVAKIK 106

Query: 188 RTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           R   V  LY          D I    LI  +CN  KV  G  +L ++L  G  P    F 
Sbjct: 107 RYFDVISLYKRMSLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFT 166

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR-------- 290
            L+   C        + LL  MV     P+  TY  ++NGLC +   + A +        
Sbjct: 167 SLVKGLCLGSRISEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNG 226

Query: 291 ---------------------------------VFNDLKERGYVPDTVMYTTVIHGLCKM 317
                                            +F ++K RG  PD V Y+++IHG+C  
Sbjct: 227 NGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHT 286

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G    A+ ++ EM+ +G+ PN  T+N +I   C+   +EEA  L K M+ +G    T TY
Sbjct: 287 GRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTY 346

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           NTLI G CL GR D+A  LF  M  KGI  D ++YN LI GYCK G++V
Sbjct: 347 NTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMV 395



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 166/342 (48%), Gaps = 18/342 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G +PD ++ N+L +           +  L      G SPN  +    ++ LC    I
Sbjct: 119 SLIGLAPDFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRI 178

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--GY-------- 204
            EA     K+  MG   ++ T+ + L G      T L  KL+ +++    G+        
Sbjct: 179 SEATGLLRKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNL 238

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +I + C DG + +G EL  ++   G+ P+  A++ +I   C    +     L + 
Sbjct: 239 VCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNE 298

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P+  T+  +I+ LCK+ K  EA  +   + +RG  PDT  Y T+I G C  G 
Sbjct: 299 MVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGR 358

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DAR ++  M  KG+  +  +YN +I+GYC+   + EAK+L++EM+ K    T +TYNT
Sbjct: 359 IDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNT 418

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L+ GL   G+  +A++LF EM    +  +  TYN L+ G CK
Sbjct: 419 LLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCK 460



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 169/345 (48%), Gaps = 18/345 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTG-----FSPNPNSLELYIQCLCES 151
           G+ P++V+   L + L        A K+  + L+  G       PN       I  LC+ 
Sbjct: 192 GYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKD 251

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           GLI++    F ++K  G+   +  ++S + G     R +    L++++++ G        
Sbjct: 252 GLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTF 311

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI A C  GK+ E   LL+ +++ G  P+   +N LI  FC +       +L  +M +
Sbjct: 312 NVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMES 371

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +    D  +Y  +ING CKS + +EA +++ ++  +  +P  + Y T++ GL + G + D
Sbjct: 372 KGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRD 431

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++ EM    L P   TYN ++ G C+ ++L EA  L   + +  +  +   +N LI 
Sbjct: 432 AWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLID 491

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           GLC   + + A  LF  ++ +G+  +VITY  +I G CK G++ N
Sbjct: 492 GLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLEN 536



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 156/336 (46%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ + +   +     ++ A    +     G  PN  +  + I  LC++G +EEA
Sbjct: 268 GISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEEA 327

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
                 + + G      T+N+ + G     R D    L+          D +    LI  
Sbjct: 328 NHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLING 387

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G++ E  +L R+++   ++P    +N L++    +        L   M   +  P+
Sbjct: 388 YCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPE 447

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +++GLCK+    EA  +F+ L+   + P   ++  +I GLCK   +  AR+++ 
Sbjct: 448 SCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKIEIARELFN 507

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            + H+GL PN  TY  MIHG C+   LE AK L   M +KG     VT+NTL+ G C + 
Sbjct: 508 RLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQND 567

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              +   L +EMA+K    D  T + ++    K+ K
Sbjct: 568 EMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEK 603



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 149/316 (47%), Gaps = 12/316 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ NVL D+L +A   + A   +  +   G SP+  +    I   C  G I++A
Sbjct: 303 GVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDA 362

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
              F  ++  G+     ++N  + G  K  R     KLY ++         I    L+  
Sbjct: 363 RDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTG 422

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GKV + + L  ++    L PE+  +N L+   C+  +     EL H +   +  P 
Sbjct: 423 LFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPS 482

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              +  +I+GLCK+RK   A  +FN L   G  P+ + YT +IHGLCK G L +A+ ++ 
Sbjct: 483 IQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFL 542

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  PN  T+N+++ G+C+ D +++   L +EM +K +     T + ++  L    
Sbjct: 543 GMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDE 602

Query: 389 RTDEAYHLFEEMAQKG 404
           +  E  HL      +G
Sbjct: 603 KYREYLHLLPTFPAQG 618



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/190 (22%), Positives = 83/190 (43%), Gaps = 30/190 (15%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
           L + N++  ++  F +L +H  F P +   N L D L +AR  ++A +    L   G  P
Sbjct: 458 LCKNNHLSEAMELFHYLENH-DFQPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEP 516

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  +  + I  LC+SG +E A   F  ++E G   ++ T+N+                  
Sbjct: 517 NVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNT------------------ 558

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L++ FC + ++ +  ELL+++ E    P+ +  + ++    + + +     L
Sbjct: 559 --------LMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHL 610

Query: 257 LHTMVARNRA 266
           L T  A+ + 
Sbjct: 611 LPTFPAQGQT 620


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 108/354 (30%), Positives = 163/354 (46%), Gaps = 22/354 (6%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
            FQ L  H G +P  V+   L   L  A +F  A +    ++  G  P+P +  + I   
Sbjct: 345 LFQKLL-HSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDAS 403

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--- 205
           C+ G++EEA     K+ E G    + T+N+ + G  K  R +    L++++   G     
Sbjct: 404 CKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNR 463

Query: 206 ---------------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                          I   C  GK+ E + LL+++ +DG VP+   ++ LIS  C     
Sbjct: 464 RSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARV 523

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                LL  MV R   P   T   +I+GLCK+ +  EA  V + +   G  PD V Y T+
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTL 583

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +HG C+ G    AR++  +M+ +GL PN  TY +++ G C+ + L EA  +  +M   G 
Sbjct: 584 VHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGC 643

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                TY  LI G C  G+ D    LF EM   GI  D + Y TL    CK G+
Sbjct: 644 APNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGR 697



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 47/336 (13%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N ++  + +  LC++  +++A      + E  +  +  + +S L+G +   R D   ++Y
Sbjct: 144 NSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVY 203

Query: 197 HD------LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA-------------- 236
            +      L+    L++ FC+ G+V +  ELLR + ++   P+  +              
Sbjct: 204 RENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRV 263

Query: 237 ---------------------------FNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
                                      +N +I   C+        ++   M  RN +PD+
Sbjct: 264 EEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDS 323

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           ++Y  +I+GL K+ K  +A  +F  L   G  P TV YT++IHGLC      DAR+++ +
Sbjct: 324 WSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFAD 383

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +G  P+  TYN MI   C+   LEEA  L K+M++ G+    VTYNT++ GLC   R
Sbjct: 384 MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 443

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA  LF EM + G   +  ++NT+I G C++ KI
Sbjct: 444 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKI 479



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 153/358 (42%), Gaps = 58/358 (16%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCES------ 151
           G  PD+V+ N + D L ++   + A+   + ++  G +PN  S    I  LC+       
Sbjct: 423 GHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQA 482

Query: 152 ---GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE------- 201
              G ++EAF    ++ + G    + T+++ + G   I R D    L  D+++       
Sbjct: 483 CQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTV 542

Query: 202 --SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C  G++ E  E+L  ++  G  P+   +N L+   C      R  ELL  
Sbjct: 543 VTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSD 602

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MVAR  AP+  TY  +++GLCK+ +  EA  VF  +K  G  P+   YT +I G C  G 
Sbjct: 603 MVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQ 662

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR---------------------------- 351
           +    K++ EM+  G+ P+   Y ++    C+                            
Sbjct: 663 VDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVY 722

Query: 352 ---IDNLEEAKRLH------KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
              +D L EA ++       ++M+  G         +L+AGLC  G+  EA  + EE+
Sbjct: 723 RFAVDGLLEAGKMEMALGFVRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEI 780



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 111/221 (50%), Gaps = 8/221 (3%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +IQ +CN G+  E  ++   ++E+   P    +N LI    +++    V +++  MV R 
Sbjct: 16  VIQGWCNVGRTFEAVKIF-SLMEECHSPYPDVYNVLIDSLSKRQETEAVKKMVQVMVDRG 74

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+FT+  ++ GLCK+ K  EA  V ++++ R   P     + + H LC  G +  A 
Sbjct: 75  CFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCLRGSMERA- 133

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
              F+++    + N   YN ++   C+   +++A  L + M +K       + ++++ GL
Sbjct: 134 ---FQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGL 190

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              GR DEA  ++ E  ++      +T N L++G+C  G++
Sbjct: 191 MDSGRIDEALQVYRENRREPCL---VTLNVLLEGFCSRGQV 228



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 112/285 (39%), Gaps = 14/285 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + L   L        A   L+        P   +    I  LC++G I+EA
Sbjct: 502 GHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEA 561

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G    + T+N+ + G  +  +T+   +L  D++  G          L+  
Sbjct: 562 REVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSG 621

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E   +  Q+   G  P    +  LI  FC         +L   MV    +PD
Sbjct: 622 LCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPD 681

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKE--RGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           +  Y  +   LCKS +   A  +  + +E  R       +Y   + GL + G +  A   
Sbjct: 682 HVVYGTLAAELCKSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGF 741

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             +M+  G LP      S++ G C+     EA+ + +E++D  YG
Sbjct: 742 VRDMVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDLAYG 786



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 5/159 (3%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P    +  VI G C   +  EA ++F+ L E  + P   +Y  +I  L K       +KM
Sbjct: 8   PAPLLFTSVIQGWCNVGRTFEAVKIFS-LMEECHSPYPDVYNVLIDSLSKRQETEAVKKM 66

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M+ +G  P+ +T+ +++ G C+   ++EA+ +  EM  +       T + L   LCL
Sbjct: 67  VQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSFLAHELCL 126

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  + A+ L E M       +   YN ++   CK  ++
Sbjct: 127 RGSMERAFQLLEIMP----VANSSAYNIVVVALCKAARV 161


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 176/339 (51%), Gaps = 17/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+   N +   L +A   + A  +L      G  P+  +   +I    ++G + EA
Sbjct: 215 GVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEA 274

Query: 158 FCAFSKLKEMGVF-----------GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
              F ++ + G+            G  K  N  L+  + I R      +  D+      I
Sbjct: 275 AKYFDEMLDHGLMPNNPLYTVLINGHFKAGN--LMEALSIFRHLHALGVLPDVQTCSAFI 332

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
                +G+V E  ++  ++ E GLVP+   ++ LIS FC++    +  EL   M  +  A
Sbjct: 333 HGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIA 392

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+ F Y  +++GLCKS     A ++F+ + E+G  PD+V Y+T+I G CK   + +A  +
Sbjct: 393 PNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSL 452

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM  KG+ P+ + YN+++HG C+  ++E+A  L +EML KG+  TT+++NTLI G C 
Sbjct: 453 FHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFA-TTLSFNTLIDGYCK 511

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  EA  LF+EM  K I  D +TY T+I  +CK GK+
Sbjct: 512 SCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKM 550



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 166/355 (46%), Gaps = 30/355 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+         +      A  + D     G  PN     + I    ++G + EA
Sbjct: 250 GLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEA 309

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  L  +GV   ++T ++ + G +K  R     K++ +L E G          LI  
Sbjct: 310 LSIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISG 369

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G+V + +EL  ++   G+ P    +N L+   C+  +  R  +L   M  +   PD
Sbjct: 370 FCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPD 429

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+G CKS    EA+ +F+++  +G  P + +Y  ++HG CK G +  A  ++ 
Sbjct: 430 SVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFR 489

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG      ++N++I GYC+   ++EA +L +EM+ K      VTY T+I   C  G
Sbjct: 490 EMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAG 548

Query: 389 RTDEA-----------------YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + +EA                 + LFE+M  KG+  D +TY  +I  +CKE  +V
Sbjct: 549 KMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLV 603



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 160/335 (47%), Gaps = 14/335 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  VS   + + L   +   +A   L+    +G  PN       I      G IEEA   
Sbjct: 148 PSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRL 207

Query: 161 FSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVW------KLYHDLIESGYLIQAFC 210
              +   GV   I  +N A++ C+    K++             L  D +  G  I  + 
Sbjct: 208 LDGMSCSGVAPDIFCYN-AIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYS 266

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK++E  +   ++L+ GL+P N  +  LI+   +  N      +   + A    PD  
Sbjct: 267 KTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQ 326

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T    I+GL K+ +  EA +VF++LKE+G VPD   Y+++I G CK G +  A ++  EM
Sbjct: 327 TCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEM 386

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG+ PN + YN+++ G C+  +++ A++L   M +KG    +VTY+T+I G C     
Sbjct: 387 CLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENV 446

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA+ LF EM  KG+      YN L+ G CKEG +
Sbjct: 447 AEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDM 481



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/312 (29%), Positives = 148/312 (47%), Gaps = 10/312 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
            RA ++ +D ++     P+  S    I  LC    +  A     K+   G+  ++  +++
Sbjct: 132 GRALEL-LDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYST 190

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND---------GKVSEGYELLRQVLEDG 229
            ++G     R +   +L   +  SG     FC +         GK+ E    L ++   G
Sbjct: 191 LIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRG 250

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           L P+   F   I  + +       ++    M+     P+N  Y  +ING  K+   +EA 
Sbjct: 251 LKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEAL 310

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F  L   G +PD    +  IHGL K G + +A K++ E+  KGL+P+ +TY+S+I G+
Sbjct: 311 SIFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGF 370

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   +E+A  LH EM  KG       YN L+ GLC  G    A  LF+ M +KG+  D 
Sbjct: 371 CKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 430

Query: 410 ITYNTLIQGYCK 421
           +TY+T+I GYCK
Sbjct: 431 VTYSTMIDGYCK 442



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 175/373 (46%), Gaps = 31/373 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           +  N++ ++  F+ LH+  G  PD+ +C+     L++    + A+     L   G  P+ 
Sbjct: 302 KAGNLMEALSIFRHLHA-LGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDV 360

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G +E+AF    ++   G+  +I  +N+ + G  K        KL+  
Sbjct: 361 FTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDG 420

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           + E G          +I  +C    V+E + L  ++   G+ P +  +N L+   C++ +
Sbjct: 421 MPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGD 480

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             +   L   M+ +  A    ++  +I+G CKS K  EA ++F ++  +  +PD V YTT
Sbjct: 481 MEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 539

Query: 310 VIHGLCKMGWLGDARKMWFEM-----------------IHKGLLPNEYTYNSMIHGYCRI 352
           VI   CK G + +A  ++ EM                 + KG+ P+E TY  +I+ +C+ 
Sbjct: 540 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKE 599

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           DNL EA +L  E++ KG       ++ LI  LC      EA  L +EM + G+   +   
Sbjct: 600 DNLVEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAAC 659

Query: 413 NTLIQGYCKEGKI 425
           +TL++ + + GK+
Sbjct: 660 STLVRSFHEAGKM 672



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 164/372 (44%), Gaps = 31/372 (8%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--- 132
           F   L +   V  +++ F  L    G  PD+ + + L     +    + A +  D     
Sbjct: 331 FIHGLLKNGRVQEALKVFSELKEK-GLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLK 389

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +PN       +  LC+SG I+ A   F  + E G+     T+++ + G  K +     
Sbjct: 390 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 449

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L+H++   G          L+   C +G + +   L R++L+ G      +FN LI  
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDG 508

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----- 298
           +C+       S+L   M+A+   PD+ TY  VI+  CK+ K  EA  +F +++ER     
Sbjct: 509 YCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVD 568

Query: 299 ------------GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
                       G  PD V Y  VI+  CK   L +A K+  E++ KG+L     ++ +I
Sbjct: 569 TVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLI 628

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
              C+ ++L EA +L  EM + G   +    +TL+      G+ DEA  +FE +   G+ 
Sbjct: 629 TALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLV 688

Query: 407 RDVITYNTLIQG 418
            D  T   L+ G
Sbjct: 689 PDTTTLIDLVNG 700



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 139/303 (45%), Gaps = 9/303 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +  +    LC +  + EA   F ++++ G+       ++ + G ++    D V
Sbjct: 5   GLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEV 64

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++   ++  G          LI   C  GK+ +  E+L+ ++  G  P +  F  LI  
Sbjct: 65  LRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEG 124

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C + N GR  ELL  M  RN  P   +Y  +INGLC  +    A ++   +   G  P+
Sbjct: 125 YCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLKPN 184

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V+Y+T+I G    G + +AR++   M   G+ P+ + YN++I    +   +EEA     
Sbjct: 185 VVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLL 244

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E+  +G     VT+   I G    G+  EA   F+EM   G+  +   Y  LI G+ K G
Sbjct: 245 EIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAG 304

Query: 424 KIV 426
            ++
Sbjct: 305 NLM 307



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/199 (30%), Positives = 89/199 (44%)

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E GLVP    +  + +  C  K           M      PD      +I+G  +     
Sbjct: 3   EKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDID 62

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           E  R+ + +   G   + + Y  +IHGLCK G +  A ++   MI  G  PN  T+  +I
Sbjct: 63  EVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLI 122

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GYCR  N+  A  L  EM  +    + V+Y  +I GLC       A  L E+M   G+ 
Sbjct: 123 EGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSGLK 182

Query: 407 RDVITYNTLIQGYCKEGKI 425
            +V+ Y+TLI GY  EG+I
Sbjct: 183 PNVVVYSTLIMGYASEGRI 201



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 144/328 (43%), Gaps = 28/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++   N L D L ++   + A    D     G  P+  +    I   C+S  + EA
Sbjct: 390 GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEA 449

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAF 209
           F  F ++   GV      +N+ + GC K    +    L+ ++++ G+        LI  +
Sbjct: 450 FSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTLSFNTLIDGY 509

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-----EKKNF------------GR 252
           C   K+ E  +L ++++   ++P++  +  +I   C     E+ N               
Sbjct: 510 CKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNLIVDT 569

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           V  L   MVA+   PD  TY  VI   CK    +EA+++ +++  +G +    ++  +I 
Sbjct: 570 VFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHDLLIT 629

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            LCK   L +A K+  EM   GL P+    ++++  +     ++EA R+ + +   G   
Sbjct: 630 ALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGKMDEATRVFEGVKSLGLVP 689

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            T T   L+ G      +++A +L +++
Sbjct: 690 DTTTLIDLVNGNLNDTDSEDARNLIKQL 717



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 80/161 (49%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  +   P+ +TY  +  GLC++++  EA   F ++++ G  PD    + +I G  + G 
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +  ++   M+  G+  N  TYN +IHG C+   +E+A  + K M+  G    + T+  
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCL 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           LI G C       A  L +EM ++ +    ++Y  +I G C
Sbjct: 121 LIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLC 161


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 170/335 (50%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  P++ + N+L +S         AF V    L   G  P+P +    I+ LC  G I 
Sbjct: 94  FGVPPNVYTLNILINSFCHLNRVGFAFSVLAKIL-KLGHQPDPTTFTTLIRGLCVEGKIG 152

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
           EA   F K+ + G   ++ T+ + + G  K+  T    +L           D++    +I
Sbjct: 153 EALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSII 212

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + L  Q++  G+ P+   +  L+   C    +  V+ LL+ MV     
Sbjct: 213 DSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKIL 272

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD   +  V++ LCK  K  EA+ + + + +RG  PD V YTT++ G C    + +A K+
Sbjct: 273 PDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKV 332

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+ KG  P+  +Y ++I+GYC+I  +++A  L +EM  K +   T TYNTL+ GLC 
Sbjct: 333 FDMMVRKGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCH 392

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR  +A  LF EM  +G   D++TY+ L+   CK
Sbjct: 393 VGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCK 427



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 164/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           GF P++V+   L + L +      A+  L S         + +Y   I  LC+   + EA
Sbjct: 165 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEA 224

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+   I T+ S +     +     V  L + ++ S  L         + A
Sbjct: 225 FNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDA 284

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV+E +E++  +++ G+ P+   +  L+   C +       ++   MV +  APD
Sbjct: 285 LCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPD 344

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK  K  +A  +F ++  + ++PDT  Y T+++GLC +G L DA  ++ 
Sbjct: 345 VISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFH 404

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G +P+  TY+ ++   C+  +LEEA  L K +           YN +I G+C  G
Sbjct: 405 EMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAG 464

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  ++ KG+   V TYN +I G CK G
Sbjct: 465 ELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 499



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 162/346 (46%), Gaps = 14/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P +V    L  S+ + + +   +     +DS G  PN  +L + I   
Sbjct: 53  FNRLLHMHP--PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILINSF 110

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C    +  AF   +K+ ++G      T+ + + G     +      L+  +I+ G+    
Sbjct: 111 CHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQPNV 170

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C  G  S    LLR + +    P+   +  +I   C+ +       L   
Sbjct: 171 VTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQ 230

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV +  +PD FTY  +++ LC   +      + N +     +PD V+++TV+  LCK G 
Sbjct: 231 MVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGK 290

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A ++   MI +G+ P+  TY +++ G+C    ++EA ++   M+ KG+    ++Y T
Sbjct: 291 VTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTT 350

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C   + D+A +LFEEM +K    D  TYNTL+ G C  G++
Sbjct: 351 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRL 396



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 145/321 (45%), Gaps = 14/321 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ +   L  +L     +K     L+   ++   P+       +  LC+ G + EA
Sbjct: 235 GISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEA 294

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                 + + GV   + T+ + + G C++ +  + V K++  ++  G+         LI 
Sbjct: 295 HEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAV-KVFDMMVRKGFAPDVISYTTLIN 353

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C   K+ +   L  ++     +P+   +N L+   C          L H MVAR + P
Sbjct: 354 GYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMP 413

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++ LCK+R   EA  +   ++     PD  +Y  +I G+C+ G L  AR ++
Sbjct: 414 DLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLF 473

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KGL P+ +TYN MIHG C+   L EA +L  EM          TYNT+  G   +
Sbjct: 474 SNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQN 533

Query: 388 GRTDEAYHLFEEMAQKGIFRD 408
             T  A  L EEM  +G   D
Sbjct: 534 NETLRAIQLLEEMLARGFSAD 554



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/137 (32%), Positives = 71/137 (51%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN L      P  V +  ++  + KM        +  +M   G+ PN YT N +I
Sbjct: 48  DALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNILI 107

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C ++ +  A  +  ++L  G+     T+ TLI GLC+ G+  EA HLF++M  +G  
Sbjct: 108 NSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMIDEGFQ 167

Query: 407 RDVITYNTLIQGYCKEG 423
            +V+TY TLI G CK G
Sbjct: 168 PNVVTYGTLINGLCKVG 184



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/216 (19%), Positives = 86/216 (39%), Gaps = 12/216 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF+PD++S   L +   +      AM   +      + P+  +    +  LC  G +++A
Sbjct: 340 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDA 399

Query: 158 FCAFSKLKEMGVFGSIKTW---------NSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
              F ++   G    + T+         N  L   + + +      L  D+     +I  
Sbjct: 400 IALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIIDG 459

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++    +L   +   GL P    +N +I   C++      ++L   M   + +PD
Sbjct: 460 MCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPD 519

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
             TY  +  G  ++ + L A ++  ++  RG+  D+
Sbjct: 520 GCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADS 555



 Score = 42.0 bits (97), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 45/106 (42%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DA   +  ++H    P+   +  ++    ++ +      L  +M   G      T N 
Sbjct: 46  LDDALSSFNRLLHMHPPPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTLNI 105

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI   C   R   A+ +  ++ + G   D  T+ TLI+G C EGKI
Sbjct: 106 LINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKI 151


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 190/403 (47%), Gaps = 23/403 (5%)

Query: 40  YTEIAKQVCKITRTKPRWEQTL--LSDIPSFNFNDPLFFREFLKQQ---NNVLLSIRFFQ 94
           YT + + +CK+     R EQ L  L  + S  F+  ++    +       N L   R F 
Sbjct: 14  YTSLIQGLCKV----KRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLEL--YIQCLCESG 152
              ++   +P++V+  VL D L +      A+  L        P ++     I  LC++ 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAE 129

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
              EA+    ++   G    I T+ + + G  K  ++D   +++  L+  G+        
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
            LI   C +G++ E  +L  ++++ G  +P    +N LIS FC          LL  M  
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
              +PD  TY  ++NG CK  +  +AY + N +  +G  PD V +T+++ GLC+   L D
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  EM  K   P  YTYN+++ GYCR + LEEA++   E +D       V++N +I 
Sbjct: 310 AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIR 367

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC   R+ EA  L EE  ++    DV+ Y T+I G C+E K+
Sbjct: 368 GLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKV 410



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 2/229 (0%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D +    LIQ  C   ++ +    L +++  G  P+   +  +I   C +       + L
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  RN  P+  TY  +I+GLCK  +  EA  + + ++++  VP  V Y ++I GLCK 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKA 128

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
               +A  +  EM++ G +P+ +TY ++I G+C+    ++A R+ ++++ +G+    VTY
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
           + LI GLC  GR  EA  LF  M + G    + +TYN+LI G+C+ GK+
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 93/167 (55%), Gaps = 4/167 (2%)

Query: 260 MVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVF-NDLKERGYVPDTVMYTTVIHGLCKM 317
           MVA N    +F TY  +I GLCK  KRLE   +F   +  +G+ PD   YT VIH LC  
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKV-KRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVE 59

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             L +ARK   EM ++ L PN  TY  +I G C+   ++EA  L  +M  K    T VTY
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTY 118

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           N+LI+GLC   R  EAY L EEM   G   D+ TY TLI G+CK  K
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 165



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 153/330 (46%), Gaps = 21/330 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELY 144
           ++R F+ L +  GF PD+V+ + L D L +    K A+D     + S    PN  +    
Sbjct: 169 ALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 227

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C  G ++EA     ++ E G    + T+ + + G  K+ R D  + L + +   G 
Sbjct: 228 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+   C + ++S+   +L ++      P    +N ++  +C         +
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK 347

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
            +  +   +  P+  ++  +I GLCK  +  EA  +  + + R   PD VMYTTVI GLC
Sbjct: 348 FM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLC 405

Query: 316 KMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           +   + +A +++ +M+ + G LPN  TY++++ G C    L+ A    +  ++KG     
Sbjct: 406 REKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGMLDRA----RGYIEKGCVPNI 461

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
            TYN LI       R ++A  L ++M Q+G
Sbjct: 462 GTYNLLIDAFRKANRDEDARELLDDMVQRG 491


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 162/304 (53%), Gaps = 14/304 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF P+  ++   ++ +     I +A   F ++ E G+FG  KT+   + G  K  +T L 
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 193 WKLYH--------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            KL+         D+   G +I + C DG  +E  ++  +++  G++P+   ++ L+   
Sbjct: 132 IKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGL 191

Query: 245 CEKKNFGRVSELLH---TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           C    FGR+ E L     M  R  + D +TY  +I+GL ++    E     N + +RG+ 
Sbjct: 192 CR---FGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 248

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD   +T +I GLCK G +G+A+++   M HKG  P+  TYN++++G C +  LE+A +L
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKL 308

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            + + D+G      +YN LI G C   + DEA+ LFEEM  KG+    +TYNTLI   C+
Sbjct: 309 FESLADRGIKLNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQ 368

Query: 422 EGKI 425
            G++
Sbjct: 369 SGRV 372



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 162/333 (48%), Gaps = 12/333 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+ +  ++ DSL +      A+D        G  P+       +  LC  G ++EA   F
Sbjct: 145 DVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFF 204

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
            +++  G+   + T+NS + G  +      V    + +++ G+         LI   C +
Sbjct: 205 KEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKE 264

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           GKV E  ++L  +   G  P+   +N L++  C        ++L  ++  R    + F+Y
Sbjct: 265 GKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 324

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +ING CK +K  EA+R+F +++ +G  P TV Y T+I  LC+ G +  A+K++ EM  
Sbjct: 325 NILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQT 384

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G      TY  ++ G C+  +LEEA  L + +    +      ++ L+ G+C  G+ +E
Sbjct: 385 CGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEE 444

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A+  F+E+++ G+  D I YN LI G C +G +
Sbjct: 445 AWKQFDEISKNGLEPDTIAYNILINGLCNKGML 477



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 155/340 (45%), Gaps = 13/340 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++ FF+ +    G S D+ + N L   L  A  +K    FL+     GFSP+  +  + I
Sbjct: 200 ALEFFKEMEGR-GISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILI 258

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC+ G + EA      +   G    I T+N+ + G   + + +   KL+  L + G  
Sbjct: 259 DGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIK 318

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C D K+ E + L  ++   GL P    +N LI   C+        +L
Sbjct: 319 LNVFSYNILINGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKL 378

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M    +     TY  +++GLCK+    EA  +F  +K+  + P+  +++ ++ G+C+
Sbjct: 379 FVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCR 438

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L +A K + E+   GL P+   YN +I+G C    L EA +L  +M +KG    ++T
Sbjct: 439 AGKLEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSIT 498

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +N +I  L       EA  L EEM  +    D    + L+
Sbjct: 499 FNVIIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 34/234 (14%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK- 284
           L+ G  P+      L+     +       +L   M  +    D  TY  +INGLCK+RK 
Sbjct: 69  LKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKT 128

Query: 285 ---------------------------------RLEAYRVFNDLKERGYVPDTVMYTTVI 311
                                              EA  +F+++   G +PD V+Y++++
Sbjct: 129 GLAIKLHEKMKGNCKGDVFTYGMIIDSLCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 188

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLC+ G L +A + + EM  +G+  + YTYNS+IHG  R    +E       M+D+G+ 
Sbjct: 189 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFS 248

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+  LI GLC  G+  EA  + E M  KG   D++TYNTL+ G C  G++
Sbjct: 249 PDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQL 302


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  179 bits (454), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 190/403 (47%), Gaps = 23/403 (5%)

Query: 40  YTEIAKQVCKITRTKPRWEQTL--LSDIPSFNFNDPLFFREFLKQQ---NNVLLSIRFFQ 94
           YT + + +CK+     R EQ L  L  + S  F+  ++    +       N L   R F 
Sbjct: 14  YTSLIQGLCKV----KRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLEL--YIQCLCESG 152
              ++   +P++V+  VL D L +      A+  L        P ++     I  LC++ 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCVPTAVTYNSLISGLCKAE 129

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
              EA+    ++   G    I T+ + + G  K  ++D   +++  L+  G+        
Sbjct: 130 RASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYS 189

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
            LI   C +G++ E  +L  ++++ G  +P    +N LIS FC          LL  M  
Sbjct: 190 CLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAE 249

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
              +PD  TY  ++NG CK  +  +AY + N +  +G  PD V +T+++ GLC+   L D
Sbjct: 250 TGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSD 309

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  EM  K   P  YTYN+++ GYCR + LEEA++   E +D       V++N +I 
Sbjct: 310 AVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEEMD--CPPNVVSFNIMIR 367

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC   R+ EA  L EE  ++    DV+ Y T+I G C+E K+
Sbjct: 368 GLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKV 410



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 123/229 (53%), Gaps = 2/229 (0%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D +    LIQ  C   ++ +    L +++  G  P+   +  +I   C +       + L
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  RN  P+  TY  +I+GLCK  +  EA  + + ++++  VP  V Y ++I GLCK 
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNSLISGLCKA 128

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
               +A  +  EM++ G +P+ +TY ++I G+C+    ++A R+ ++++ +G+    VTY
Sbjct: 129 ERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTY 188

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
           + LI GLC  GR  EA  LF  M + G    + +TYN+LI G+C+ GK+
Sbjct: 189 SCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKM 237



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 153/330 (46%), Gaps = 21/330 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELY 144
           ++R F+ L +  GF PD+V+ + L D L +    K A+D     + S    PN  +    
Sbjct: 169 ALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 227

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C  G ++EA     ++ E G    + T+ + + G  K+ R D  + L + +   G 
Sbjct: 228 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 287

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+   C + ++S+   +L ++      P    +N ++  +C         +
Sbjct: 288 TPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARK 347

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
            +  +   +  P+  ++  +I GLCK  +  EA  +  + + R   PD VMYTTVI GLC
Sbjct: 348 FM--LEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLC 405

Query: 316 KMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           +   + +A +++ +M+ + G LPN  TY+++I G C    L+ A    +  ++KG     
Sbjct: 406 REKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGMLDRA----RGYIEKGCVPNI 461

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
            TYN LI       R ++A  L ++M Q+G
Sbjct: 462 GTYNLLIDAFRKANRDEDARELLDDMVQRG 491



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/167 (44%), Positives = 93/167 (55%), Gaps = 4/167 (2%)

Query: 260 MVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVF-NDLKERGYVPDTVMYTTVIHGLCKM 317
           MVA N    +F TY  +I GLCK  KRLE   +F   +  +G+ PD   YT VIH LC  
Sbjct: 1   MVATNSCSADFVTYTSLIQGLCKV-KRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVE 59

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             L +ARK   EM ++ L PN  TY  +I G C+   ++EA  L  +M  K    T VTY
Sbjct: 60  NRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTY 118

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           N+LI+GLC   R  EAY L EEM   G   D+ TY TLI G+CK  K
Sbjct: 119 NSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 165


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 165/341 (48%), Gaps = 15/341 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF   L SCN L  +LV+       +     +       N N+  ++I  LC +G + +
Sbjct: 159 YGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNK 218

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD------------LVWKLYHDLIESGY 204
           A  A   +K  G+  ++ T+N+ + G  K                 L  K+  + +    
Sbjct: 219 AEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNT 278

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC D  V+   +   ++ + GL P    +N LI+  C         +L   MV   
Sbjct: 279 LIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLG 338

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +ING CK +   EA +VF+D+ ++  VP+ + + T+I   CK G + +  
Sbjct: 339 LKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGF 398

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M+ +G+LPN  TYN +I G CR  +L+ AK L  EM +KG     VTYN LI GL
Sbjct: 399 SLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGL 458

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C + ++  A  L  EM   G+  + +TYNTL+ GYC EGK+
Sbjct: 459 CKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKL 499



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 181/390 (46%), Gaps = 33/390 (8%)

Query: 66  PSFNFNDPL-FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           P      P  F  + L    +  L +RFF+W    Y  S  L   + +   L  ++ +  
Sbjct: 37  PHLRVTKPATFLDQLLNAGVDSELVLRFFKWSQKEYRLSYGLEPTSKVLHFLANSKRYSK 96

Query: 125 AMDFLDS------------------TGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKL 164
              FLDS                   G  P   +L  ++ +    ++  +  A+ AF++ 
Sbjct: 97  VRSFLDSFVKNEKHTVSSVFHSLLLDGGRPGATALIIDMLVLAYVKNLELHCAYEAFTRA 156

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKV 215
           K+ G   S+ + N  L   +K ++   V  +Y ++I+             I   C  GK+
Sbjct: 157 KDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKL 216

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV---SELLHTMVARNRAPDNFTY 272
           ++  + +  +   G+ P    +N L+  +C++ + G++      +  M+A    P+  T+
Sbjct: 217 NKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANKICPNEVTF 276

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G CK      A + F +++++G  P+ V Y ++I+GLC  G L +A  +W +M+ 
Sbjct: 277 NTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVG 336

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            GL PN  TYN++I+G+C+   ++EA ++  ++  +      +T+NT+I   C  G  +E
Sbjct: 337 LGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEE 396

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            + L   M  +GI  +V TYN LI G C++
Sbjct: 397 GFSLCSSMLDEGILPNVSTYNCLIAGLCRK 426



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 144/289 (49%), Gaps = 12/289 (4%)

Query: 104 PDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ V+ N L D   +     A K A + +   G  PN  +    I  LC +G +EEA   
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
           + K+  +G+  +I T+N+ + G  K        K++ D+         I    +I A+C 
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G + EG+ L   +L++G++P  + +N LI+  C K++     ELL+ M  +    D  T
Sbjct: 391 EGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVT 450

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK+ K   A ++ N++   G  P+ V Y T++ G C  G L  A  +   M 
Sbjct: 451 YNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRME 510

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +   PN  TYN +I GYC+I+ LE A  L  EML+KG      TY+ +
Sbjct: 511 KERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 21/334 (6%)

Query: 100 YGFSPDLVSCNVLFDS---------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           +G SP++V+ N L D          + +A AF   M  + +    PN  +    I   C+
Sbjct: 229 WGISPNVVTYNTLVDGYCKRGSAGKMYKAEAF---MKEMLANKICPNEVTFNTLIDGFCK 285

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVWK------LYHDLIE 201
              +  A  AF ++++ G+  +I T+NS + G     K++    +W       L  +++ 
Sbjct: 286 DENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVT 345

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI  FC    + E  ++   V +  LVP    FN +I  +C++        L  +M+
Sbjct: 346 YNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSML 405

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P+  TY  +I GLC+ +    A  + N+++ +G   D V Y  +I GLCK     
Sbjct: 406 DEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSR 465

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A K+  EM + GL PN  TYN+++ GYC    L+ A  +   M  +      VTYN LI
Sbjct: 466 NAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLI 525

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            G C   + + A  L  EM +KG+  +  TY+ +
Sbjct: 526 KGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV 559



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 59/250 (23%), Positives = 103/250 (41%), Gaps = 28/250 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L +   + +  K A    D        PN  +    I   C+ G++EE 
Sbjct: 338 GLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEG 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKID---RTDLVWKLYH-----DLIESGYLIQA 208
           F   S + + G+  ++ T+N  + G C K D     +L+ ++ +     D++    LI  
Sbjct: 398 FSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDG 457

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C + K     +LL ++   GL P +  +N L+  +C +        +   M    + P+
Sbjct: 458 LCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPN 517

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G CK  K   A  + N++ E+G  P+   Y  V                  
Sbjct: 518 VVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIV----------------RL 561

Query: 329 EMIHKGLLPN 338
           EM+ KG  P+
Sbjct: 562 EMLEKGFSPD 571



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/142 (30%), Positives = 68/142 (47%), Gaps = 3/142 (2%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           AY  F   K+ G+         ++  L K   +GD   ++ EMI + +  N  T+N  I+
Sbjct: 149 AYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGDVEYVYKEMIKRRIHTNLNTFNIFIN 208

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH---LFEEMAQKG 404
           G CR   L +A+   ++M   G     VTYNTL+ G C  G   + Y      +EM    
Sbjct: 209 GLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEAFMKEMLANK 268

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           I  + +T+NTLI G+CK+  + 
Sbjct: 269 ICPNEVTFNTLIDGFCKDENVA 290


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 173/338 (51%), Gaps = 14/338 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           +  GF PD+V+ + +   L +      A++ ++     G +P+  +  + +  LC +G +
Sbjct: 2   AEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKV 61

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           +EA   F K+ E G   +   +N+ + G  K +  +  +KL  ++   GY         +
Sbjct: 62  DEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTI 121

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +   C  GKVSE  +    +   G  P+  A+N L+    ++        L  TM   +R
Sbjct: 122 LSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADR 181

Query: 266 --APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             APD  TY  +I+G C+  K  EA ++F D+  +GY+PDTV Y +++ GL +   + +A
Sbjct: 182 KVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEA 241

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +M+ +M+  G  PN  TY+ ++ G+CR+ N+     L++EM +K +    +  N +I  
Sbjct: 242 EEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDM 301

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           LC   + D+A+ + EEM++ G   DV+TYN L+ G CK
Sbjct: 302 LCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK 339



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/351 (30%), Positives = 171/351 (48%), Gaps = 17/351 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLELY 144
           +FF  + S  G+SPD+V+ N L D+L       EA      MD  D    +P+  +    
Sbjct: 136 QFFDSMPSR-GYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRK-VAPDLITYNTL 193

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I   C     +EA   F  +   G      T+NS LLG  +    D   +++  +++SG 
Sbjct: 194 IDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGC 253

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    ++   C  G ++   EL  ++ E    P+    N +I   C+ K      +
Sbjct: 254 APNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHK 313

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M      PD  TY  +++GLCK+    +A+ +F+ + + G  PD V Y+ V++GLC
Sbjct: 314 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 373

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   + DAR ++  MI + L+P+  T+N ++ G C+   L+EAK L   M +       V
Sbjct: 374 KTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGV 433

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           T  TL+ GLC   RTDEA  LF+ M +KG   DV+ +N ++ G C+EGK+ 
Sbjct: 434 TCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLA 484



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 16/340 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G S + V+ N L + L +     RA+K+ ++ + S G+ P+  +    +  LC  G + E
Sbjct: 75  GCSANTVAYNALINGLCKDENIERAYKL-LEEMASKGYEPDNITYNTILSGLCRMGKVSE 133

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----------DLIESGYL 205
           A   F  +   G    +  +N  L    K  +    W L+            DLI    L
Sbjct: 134 AKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTL 193

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC   K  E  +L + V+  G +P+   +N ++     K N     E+   MV    
Sbjct: 194 IDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGC 253

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           AP+  TY  V++G C+         ++ ++ E+ + PD ++   VI  LCK   + DA K
Sbjct: 254 APNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHK 313

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM   G +P+  TYN ++ G C+ + +++A  L   M+D G     V+Y+ ++ GLC
Sbjct: 314 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLC 373

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +  +A  LF+ M ++ +  DV+T+N L+ G CK GK+
Sbjct: 374 KTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKL 413



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 131/266 (49%), Gaps = 37/266 (13%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    +I   C  GKV+E  E++ ++ E G+ P+   +  ++ R C         EL 
Sbjct: 9   DVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELF 68

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           H M+ R  + +   Y  +INGLCK      AY++  ++  +GY PD + Y T++ GLC+M
Sbjct: 69  HKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCRM 128

Query: 318 GWLGDARKMWFEMIHKG-------------------------------------LLPNEY 340
           G + +A++ +  M  +G                                     + P+  
Sbjct: 129 GKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLI 188

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYN++I G+CR++  +EA +L K+++ KGY   TVTYN+++ GL      DEA  +F++M
Sbjct: 189 TYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKM 248

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIV 426
              G   +  TY+ ++ G+C+ G + 
Sbjct: 249 VDSGCAPNGATYSIVLSGHCRVGNMA 274



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 63/167 (37%), Positives = 99/167 (59%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  +   PD  TY  +I+GLCK+ K  EA  +  ++ E+G  PD   YT ++  LC+ G 
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A +++ +MI +G   N   YN++I+G C+ +N+E A +L +EM  KGY    +TYNT
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +++GLC  G+  EA   F+ M  +G   DV+ YN L+    KEGK+ 
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVA 167



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 133/286 (46%), Gaps = 11/286 (3%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
           FSP+       I  LC++  +++A     ++ ++G    + T+N  L G  K +  D   
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 347

Query: 194 KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           +L+  ++++G          ++   C   KV +   L  +++E  LVP+   FN L+   
Sbjct: 348 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGL 407

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+        +LL  M   N  PD  T   +++GLC+ ++  EA R+F  + E+G V D 
Sbjct: 408 CKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADV 467

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + +  V+ GLC+ G L  A   +  M+       P+  TY ++++       +++A    
Sbjct: 468 LPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYF 527

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           ++M   G     V YNTL+ GL   GR  +A  L + M +KG   D
Sbjct: 528 QQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 130/283 (45%), Gaps = 14/283 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           FSPD++ CN + D L +A+    A   L+     G  P+  +  + +  LC++ L+++A 
Sbjct: 288 FSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAH 347

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYLIQAF 209
             FS + + G    I +++  L G  K ++           +  KL  D++    L+   
Sbjct: 348 ELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGL 407

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK+ E  +LL  + E  ++P+      L+   C  K       L   MV +    D 
Sbjct: 408 CKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADV 467

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDL-KERG-YVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             +  V+ GLC+  K  +A   F  + K  G + PD V YTT+++ L + G +  A   +
Sbjct: 468 LPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYF 527

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
            +M   G  P+   YN++++G  +     +A RL + M +KG+
Sbjct: 528 QQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGF 570



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 47/214 (21%), Positives = 79/214 (36%), Gaps = 49/214 (22%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N+L D L +A     A D LD        P+  +    +  LC     +EA   
Sbjct: 395 PDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRL 454

Query: 161 FSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVWK--------LYHDLIESGYLIQAF 209
           F  + E G    +   N  L G     K+ +  L +K           D++    L+ A 
Sbjct: 455 FQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNAL 514

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G+V +  +  +Q+   G  P+  A+N L                             
Sbjct: 515 IEAGRVDQAVDYFQQMTGSGCAPDYVAYNTL----------------------------- 545

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
                 +NGL K  + ++A R+   +KE+G++ D
Sbjct: 546 ------MNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 171/335 (51%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D +S   L   L +    + A+D L   D     PN       I  +C+  L+ EA
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CI--KI-DRTDLVWKLY-----HDLIESGYLIQA 208
           F  FS++   G+   + T+++ + G CI  K+ D  DL  K+       D+     L+ A
Sbjct: 245 FDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC DGK+ EG  +   +++ G+ P    +N L+  +C  K   +   + +TM      PD
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +K  EA  +F ++  +  +PD V Y+++I GL K G +  A ++  
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +G+ PN  TYNS++   C+   +++A  L  +  DKG+     TY+ LI GLC  G
Sbjct: 425 QMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSG 484

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + ++A  +FE++  KG   DV  Y  +IQG+C EG
Sbjct: 485 KLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEG 519



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 166/335 (49%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P     N +  SLV+++ +   +     ++  G  PN  +  + I C C+ GLI  AF 
Sbjct: 82  TPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFS 141

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIK-------IDRTDLVWKLYH-DLIESGYLIQAFC 210
            F+K+ +MG      T+ +   G C+K       +    +V   +H D I  G LI   C
Sbjct: 142 VFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC 201

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+     +LL++V  + + P    +N +I   C+ K      +L   MV++  +PD  
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVV 261

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+G C   K  +A  +FN +      PD   +  +++  CK G + + + ++  M
Sbjct: 262 TYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G+ PN  TYNS++ GYC +  + +AK +   M   G      +Y+ +I G C   + 
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           DEA +LF+EM +K I  DV+TY++LI G  K G+I
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRI 416



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 181/373 (48%), Gaps = 18/373 (4%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARA 121
           P+F FN  L      K  + VL    +        G  P+LV+CN+L +   +      A
Sbjct: 84  PAFEFNKILGSLVKSKHYHTVL----YLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFA 139

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F V    L   G+ P+  +     + LC  G I++AF    K+  +G      ++ + + 
Sbjct: 140 FSVFAKIL-KMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 182 GCIKIDRT----DLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K+  T    DL+ ++  +L++        +I + C    V+E ++L  +++  G+ P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISP 258

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   ++ LIS FC         +L + M+  N  PD +T+  ++N  CK  K  E   VF
Sbjct: 259 DVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + + ++G  P+ V Y +++ G C +  +  A+ ++  M   G+ P+  +Y+ MI+G+C+I
Sbjct: 319 DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKI 378

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              +EA  L KEM  K      VTY++LI GL   GR   A  L ++M  +G+  ++ TY
Sbjct: 379 KKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTY 438

Query: 413 NTLIQGYCKEGKI 425
           N+++   CK  ++
Sbjct: 439 NSILDALCKTHQV 451



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 12/317 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ + L          K A+D  +        P+  +  + +   C+ G ++E 
Sbjct: 255 GISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEG 314

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  + + G+  +  T+NS + G   +   +    +++ + + G          +I  
Sbjct: 315 KTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   K  E   L +++    ++P+   ++ LI    +        +L+  M  R   P+
Sbjct: 375 FCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPN 434

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+ +  +A  +    K++G+ PD   Y+ +I GLC+ G L DARK++ 
Sbjct: 435 ICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFE 494

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ KG   + Y Y  MI G+C      EA  L  +M D G      TY  +I  L    
Sbjct: 495 DLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKD 554

Query: 389 RTDEAYHLFEEMAQKGI 405
             D A  L  EM  +G+
Sbjct: 555 ENDMAEKLLREMIARGL 571



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/218 (30%), Positives = 106/218 (48%)

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F ++  V +   L  ++L     P    FNK++    + K++  V  L   M  R   P
Sbjct: 59  TFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKP 118

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +      +IN  C+      A+ VF  + + GYVPDT+ +TT+  GLC  G +  A    
Sbjct: 119 NLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFH 178

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++  G   ++ +Y ++IHG C++     A  L + +         V YNT+I  +C  
Sbjct: 179 DKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV 238

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +EA+ LF EM  KGI  DV+TY+ LI G+C  GK+
Sbjct: 239 KLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKL 276



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 103/252 (40%), Gaps = 12/252 (4%)

Query: 101 GFSPDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L D    + E    K   + +   G +P+  S  + I   C+    +EA
Sbjct: 325 GIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDEA 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++    +   + T++S + G  K  R     +L   + + G          ++ A
Sbjct: 385 MNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDA 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V +   LL +  + G  P+ + ++ LI   C+        ++   ++ +    D
Sbjct: 445 LCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLD 504

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            + Y  +I G C      EA  + + +++ G +PD   Y  +I  L K      A K+  
Sbjct: 505 VYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKDENDMAEKLLR 564

Query: 329 EMIHKGLLPNEY 340
           EMI +GL  N Y
Sbjct: 565 EMIARGLPLNFY 576


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 174/337 (51%), Gaps = 32/337 (9%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           FQ L    GF   + +CN L  ++V+      A+KV  DF+ S G   N  +L + +  L
Sbjct: 177 FQLLRKR-GFCVSINACNALLGAIVKVGWVDLAWKVYEDFVKS-GNIVNVYTLNIMVNAL 234

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C+ G ++      S+++E GV+  + T+N+                          L+ A
Sbjct: 235 CKDGKLDNVGVYLSEMEEKGVYADLVTYNT--------------------------LVNA 268

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G VSE + L+  +   GL P    +N LI+  C++ ++ R   +L  M+     P+
Sbjct: 269 YCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPN 328

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++   C+     EA RVFN++ +RG VPD + +++++    + G LG A   + 
Sbjct: 329 AATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFE 388

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   GL+P+   Y  +I+GYCR D++  A ++  EM+++G     VTYNTL+ GLC   
Sbjct: 389 KMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGK 448

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D+A  LF+EM ++G+F D  T  TLI GYCK+G +
Sbjct: 449 MLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNM 485



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 171/342 (50%), Gaps = 22/342 (6%)

Query: 101 GFSPDLVSCNVLFDSL----VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G   DLV+ N L ++     + + AF + +D +   G  P   +    I  LC+ G  E 
Sbjct: 254 GVYADLVTYNTLVNAYCRRGLVSEAFGL-VDCMAGKGLKPGLFTYNALINGLCKEGSYER 312

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALL-GCIKIDRTDLVWK------------LYHDLIESG 203
           A     ++  +G+  +  T+N  L+  C K D    VW+            +  DLI   
Sbjct: 313 AKRVLDEMLGVGLCPNAATFNPMLVESCRKED----VWEAERVFNEMLQRGVVPDLISFS 368

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            ++  F  +G++        ++   GLVP+   +  LI+ +C   +     ++ + MV R
Sbjct: 369 SIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVER 428

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
               D  TY  ++NGLC+ +   +A  +F ++ ERG  PD    TT+IHG CK G +  A
Sbjct: 429 GCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKA 488

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++  M  + L P+  TYN+++ G+C++  +E+AK L  +M+ +    + ++++ LI G
Sbjct: 489 LSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILING 548

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  G   EA+ L++EM +KGI   ++T NT+I+GY + G +
Sbjct: 549 FCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNL 590



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 163/335 (48%), Gaps = 14/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L + N L + L +  +++ A   LD     G  PN  +    +   C    + EA
Sbjct: 289 GLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEA 348

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVWK------LYHDLIESGYLIQ 207
              F+++ + GV   + ++ S+++G      ++ R    ++      L  D +    LI 
Sbjct: 349 ERVFNEMLQRGVVPDLISF-SSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILIN 407

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C +  VS   ++  +++E G V +   +N L++  C  K      EL   MV R   P
Sbjct: 408 GYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFP 467

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +T   +I+G CK     +A  +F  +  R   PD V Y T++ G CK+G +  A+++W
Sbjct: 468 DFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELW 527

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           ++MI + + P+  +++ +I+G+C +  + EA RL  EM +KG   T VT NT+I G    
Sbjct: 528 YDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRA 587

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G   +A      M  +G+  D ITYNTLI  + KE
Sbjct: 588 GNLSKANDFLNTMISEGVPPDCITYNTLINSFVKE 622



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 144/302 (47%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  S    +     +G +  A   F K+K +G+      +   + G  + D     
Sbjct: 359 GVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGA 418

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            K+ ++++E G          L+   C    + +  EL ++++E G+ P+      LI  
Sbjct: 419 LKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHG 478

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+  N  +   L  TM  R+  PD  TY  +++G CK  +  +A  ++ D+  R   P 
Sbjct: 479 YCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPS 538

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + ++ +I+G C +G + +A ++W EM  KG+ P   T N++I GY R  NL +A     
Sbjct: 539 YISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLN 598

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            M+ +G     +TYNTLI         D A+ L   M ++G+  +++TYN ++ G+ + G
Sbjct: 599 TMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHG 658

Query: 424 KI 425
           ++
Sbjct: 659 RM 660



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL+S + +            A+ + +     G  P+     + I   C +  +  A
Sbjct: 359 GVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGA 418

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++ E G    + T+N+ L G  +    D   +L+ +++E G          LI  
Sbjct: 419 LKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHG 478

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C DG +++   L   +    L P+   +N L+  FC+     +  EL + M++R   P 
Sbjct: 479 YCKDGNMTKALSLFETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPS 538

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             ++  +ING C      EA+R+++++KE+G  P  V   T+I G  + G L  A     
Sbjct: 539 YISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLN 598

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G+ P+  TYN++I+ + + +N + A  L   M ++G     VTYN ++ G   HG
Sbjct: 599 TMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHG 658

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           R  EA  +  +M  KGI  D  TY +LI GY  +
Sbjct: 659 RMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSK 692



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 138/278 (49%), Gaps = 12/278 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ N L + L   +    A +        G  P+  +L   I   C+ G + +A   F
Sbjct: 433 DVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLF 492

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCND 212
             +    +   + T+N+ + G  K+   +   +L++D+I             LI  FC+ 
Sbjct: 493 ETMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSL 552

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G VSE + L  ++ E G+ P     N +I  +    N  + ++ L+TM++    PD  TY
Sbjct: 553 GLVSEAFRLWDEMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITY 612

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +IN   K      A+ + N+++ERG +P+ V Y  ++ G  + G + +A  +  +MI 
Sbjct: 613 NTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMID 672

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           KG+ P++ TY S+I+GY   DN++EA R+H EML +G+
Sbjct: 673 KGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGF 710



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 78/153 (50%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            ++ +I    ++RK  E    F  L++RG+         ++  + K+GW+  A K++ + 
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +  G + N YT N M++  C+   L+       EM +KG     VTYNTL+   C  G  
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLV 275

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            EA+ L + MA KG+   + TYN LI G CKEG
Sbjct: 276 SEAFGLVDCMAGKGLKPGLFTYNALINGLCKEG 308



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 112/241 (46%), Gaps = 29/241 (12%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+V+ N L D   +    + A +    + S    P+  S  + I   C  GL+ EAF
Sbjct: 500 LKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAF 559

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             + ++KE G+  ++ T N+                          +I+ +   G +S+ 
Sbjct: 560 RLWDEMKEKGIKPTLVTCNT--------------------------IIKGYLRAGNLSKA 593

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            + L  ++ +G+ P+   +N LI+ F +++NF R   L++ M  R   P+  TY  ++ G
Sbjct: 594 NDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGG 653

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             +  +  EA  V + + ++G  PD   YT++I+G      + +A ++  EM+ +G +P+
Sbjct: 654 FSRHGRMQEAEMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVPD 713

Query: 339 E 339
           +
Sbjct: 714 D 714


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/366 (27%), Positives = 179/366 (48%), Gaps = 17/366 (4%)

Query: 76  FREFLK---QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD-- 130
           FR  LK   +Q  +    + F+ +  + G SPD +  N+L D   +      A    +  
Sbjct: 11  FRVVLKSFCKQGKLRDGYKLFEQMLDN-GISPDGIEYNILIDGYAKKGRVDEANRLYEEM 69

Query: 131 -STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR- 188
            S G  P+  +    +   C+   ++EA   F  + E G    + T+++ + G  K  + 
Sbjct: 70  VSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTGKV 129

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
           T+ +  L+H +IE G          LI   C D  +   Y+LL ++   G VP+N  +N 
Sbjct: 130 TEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNT 189

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           ++S  C         +   +M +R  +PD   Y  +++ L K  K  EA ++F D+  +G
Sbjct: 190 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKG 249

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           Y+PDTV Y +++ GL +   + +A +M+ +M+  G  PN  TY+ ++ G+CR   +++A 
Sbjct: 250 YMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAH 309

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           ++ +EM   G     VTYN L+ GLC     D+A+ LF  M   G   D+++Y+ ++ G 
Sbjct: 310 KVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGL 369

Query: 420 CKEGKI 425
           CK  K+
Sbjct: 370 CKTNKV 375



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 166/335 (49%), Gaps = 51/335 (15%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           SPN  +  + ++  C+ G + + +  F ++ + G+      +N  + G  K  R D   +
Sbjct: 5   SPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANR 64

Query: 195 LYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           LY +++  G          L+ AFC + K+ E  EL + + E G  P+   ++ +IS  C
Sbjct: 65  LYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLC 124

Query: 246 EKKNFGRVSE----LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           +    G+V+E    L H M+ R  + +   Y  +INGLCK      AY++  ++  +GYV
Sbjct: 125 KT---GKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYV 181

Query: 302 PDTVMYTTVIHGLCKMGWLGDAR-----------------------------------KM 326
           PD + Y T++ GLC+MG + +A+                                   K+
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + ++I KG +P+  TYNS++ G  R  N++EA+ + K+M+  G      TY+ +++G C 
Sbjct: 242 FKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCR 301

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             + D+A+ + EEM++ G   DV+TYN L+ G CK
Sbjct: 302 AKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCK 336



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 171/349 (48%), Gaps = 14/349 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELY 144
           ++  F+ + +  GF PD+V+ + +   L +      A++ L       G S N  +    
Sbjct: 97  AMELFKTM-AEKGFEPDVVTYSTIISGLCKTGKVTEALEMLFHKMIERGCSANTVAYNAL 155

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IE A+    ++   G      T+N+ L G  ++ +     + +  +   GY
Sbjct: 156 INGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGY 215

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ A   +GK  E  +L + V+  G +P+   +N ++     K N     E
Sbjct: 216 SPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEE 275

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   MVA   AP+  TY  V++G C+++K  +A++V  ++ + G VPD V Y  ++ GLC
Sbjct: 276 MFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLC 335

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   +  A +++  M+  G  P+  +Y+ +++G C+ + + +A+ L   M+++      V
Sbjct: 336 KTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVV 395

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           T+N L+ GLC  G+ DEA  L ++M   G   D + YNTL+ G  K+G+
Sbjct: 396 TFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGR 444



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/321 (28%), Positives = 155/321 (48%), Gaps = 14/321 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G S + V+ N L + L +     RA+K+ ++ + S G+ P+  +    +  LC  G + E
Sbjct: 144 GCSANTVAYNALINGLCKDENIERAYKL-LEEMASKGYVPDNITYNTILSGLCRMGKVSE 202

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F  +   G    +  +N  L    K  +TD   KL+ D+I  GY+         + 
Sbjct: 203 AKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILL 262

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                  + E  E+ ++++  G  P    ++ ++S  C  K      ++L  M      P
Sbjct: 263 GLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVP 322

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++GLCK+    +A+ +F+ + + G  PD V Y+ V++GLCK   + DAR ++
Sbjct: 323 DVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLF 382

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI + L+P+  T+N ++ G C+   L+EAK L  +M   G     V YNTL+ GL   
Sbjct: 383 DRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQ 442

Query: 388 GRTDEAYHLFEEMAQKGIFRD 408
           GR  +A  L + M +KG   D
Sbjct: 443 GRHIQADRLTQAMKEKGFLSD 463



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 97/164 (59%), Gaps = 1/164 (0%)

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R  +P+ +T+  V+   CK  K  + Y++F  + + G  PD + Y  +I G  K G + +
Sbjct: 2   RECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDE 61

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM+  GL P+ YTYNS+++ +C+   ++EA  L K M +KG+    VTY+T+I+
Sbjct: 62  ANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIIS 121

Query: 383 GLCLHGRTDEAYH-LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC  G+  EA   LF +M ++G   + + YN LI G CK+  I
Sbjct: 122 GLCKTGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENI 165



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 102/195 (52%), Gaps = 1/195 (0%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F  ++  FC++       +L   M+    +PD   Y  +I+G  K  +  EA R+
Sbjct: 6   PNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVDEANRL 65

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           + ++   G  P    Y ++++  CK   + +A +++  M  KG  P+  TY+++I G C+
Sbjct: 66  YEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCK 125

Query: 352 IDNLEEA-KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
              + EA + L  +M+++G    TV YN LI GLC     + AY L EEMA KG   D I
Sbjct: 126 TGKVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNI 185

Query: 411 TYNTLIQGYCKEGKI 425
           TYNT++ G C+ GK+
Sbjct: 186 TYNTILSGLCRMGKV 200



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 97/236 (41%), Gaps = 48/236 (20%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSP 136
           L +++N+  +   F+ + +  G +P+  + +++      A+    A   L+     G  P
Sbjct: 264 LARKSNMDEAEEMFKKMVAS-GCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVP 322

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD------ 190
           +  +  + +  LC++ L+++A   FS + + G    I +++  L G  K ++        
Sbjct: 323 DVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLF 382

Query: 191 ---LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
              +  KL  D++    L+   C  GK+ E  +LL Q+   G  P+  A+N L       
Sbjct: 383 DRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTL------- 435

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
                                       +NGL K  + ++A R+   +KE+G++ D
Sbjct: 436 ----------------------------MNGLRKQGRHIQADRLTQAMKEKGFLSD 463


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 166/334 (49%), Gaps = 10/334 (2%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           FSPD+++ N +  +  +      A+  F      SP   +  + I  LC+   I+EA+  
Sbjct: 55  FSPDVITHNTILKAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQL 114

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
             ++ +         +N  + G  K+ + D    +           D+I    LI   C 
Sbjct: 115 LDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQ 174

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              + E  +L+ ++ E GL P+  A+N L++  C++     VS+LL  MV   R PD F+
Sbjct: 175 TNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFS 234

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  V+  LC+S K  EA ++   + E+   PD V Y +++ G CK+  + +A ++  +M+
Sbjct: 235 YNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMV 294

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +   P   TY ++I G+ R D L +A R+ ++M   G     VTYN L+ GLC  G+ +
Sbjct: 295 GRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLE 354

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA+ L E M +K    DV+TY+ L+ G CK GK+
Sbjct: 355 EAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKV 388



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 156/292 (53%), Gaps = 10/292 (3%)

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           L + C C++  ++EA     K+KE G+      +N+ L G  K ++ + V KL  +++E+
Sbjct: 168 LIVGC-CQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEA 226

Query: 203 G---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          ++   C  GK  E  ++L +++E    P+   +N L+  FC+       
Sbjct: 227 GREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEA 286

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             LL  MV R  AP   TY  +I G  ++ +  +AYRV  D+ + G  PD V Y  ++ G
Sbjct: 287 ERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMEDMFKAGISPDLVTYNCLLDG 346

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G L +A ++   M+ K   P+  TY+ +++G C++  +++A+ L + ML++G    
Sbjct: 347 LCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPN 406

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            VT+NT+I G C  G+ DE + + E M +     DV+TY+TLI GYCK  ++
Sbjct: 407 LVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRM 458



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 152/346 (43%), Gaps = 35/346 (10%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPN 139
           Q N L   R         G +PD V+ N L + L +    +     L+     G  P+  
Sbjct: 174 QTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTF 233

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S    + CLCESG  EEA     K+ E      + T+NS                     
Sbjct: 234 SYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNS--------------------- 272

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+  FC   K+ E   LL  ++     P    +  LI  F           ++  
Sbjct: 273 -----LMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLADAYRVMED 327

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M     +PD  TY  +++GLCK+ K  EA+ +   + E+   PD V Y+ +++GLCK+G 
Sbjct: 328 MFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGK 387

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DAR +   M+ +G  PN  T+N+MI G+C+   ++E  ++ + M +       VTY+T
Sbjct: 388 VDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYST 447

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C   R  +A+ +       GI  D  +Y+++++G C  GK+
Sbjct: 448 LIDGYCKANRMQDAFAIL------GISPDKASYSSMLEGLCSTGKV 487



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 152/328 (46%), Gaps = 35/328 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPDLV+ N L D L +A   + A + L+       +P+  +  + +  LC+ G +++A
Sbjct: 332 GISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDA 391

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 + E G   ++ T+N+                          +I  FC  GKV E
Sbjct: 392 RLLLEMMLERGCQPNLVTFNT--------------------------MIDGFCKAGKVDE 425

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G+++L  + E    P+   ++ LI  +C+         +L        +PD  +Y  ++ 
Sbjct: 426 GHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGI------SPDKASYSSMLE 479

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC + K  EA  V + + ++G  P +  Y  +I GLC +    +A KM   M  +G  P
Sbjct: 480 GLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEP 539

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N YTY+ +I+G C+   +E+A  +   ML+KG      TY +LI G C   + D AY  F
Sbjct: 540 NLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCF 599

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + M   G   D + YN LI G+C+ G +
Sbjct: 600 KTMRDSGCEPDKLAYNILISGFCQSGNV 627



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 120/223 (53%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C   ++ E Y+LL ++++    P+   +N LI+  C+         +L  M+ R+
Sbjct: 98  LIHGLCQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERS 157

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +I G C++    EA ++   +KE G  PDTV Y  +++GLCK   L +  
Sbjct: 158 CVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVS 217

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+  EM+  G  P+ ++YN+++   C     EEA ++ ++M++K  G   VTYN+L+ G 
Sbjct: 218 KLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGF 277

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C   + DEA  L E+M  +     VITY TLI G+ +  ++ +
Sbjct: 278 CKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADRLAD 320



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/241 (31%), Positives = 120/241 (49%), Gaps = 33/241 (13%)

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD-------- 268
           EGY   R+   D   P N+ +  LI+ F    N   V E+ + M+AR  +PD        
Sbjct: 7   EGYSFFRERFSDPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVITHNTIL 66

Query: 269 -------------------------NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
                                     FTY  +I+GLC+ ++  EAY++ +++ ++   PD
Sbjct: 67  KAYCQIGDLDRALSHFRGKMWCSPTAFTYCILIHGLCQCQRIDEAYQLLDEMIQKDCHPD 126

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
             +Y  +I GLCKMG +  AR +   M+ +  +P+  TY S+I G C+ + L+EA++L +
Sbjct: 127 AAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDVITYTSLIVGCCQTNALDEARKLME 186

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M + G    TV YN L+ GLC   + +E   L EEM + G   D  +YNT++   C+ G
Sbjct: 187 KMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESG 246

Query: 424 K 424
           K
Sbjct: 247 K 247


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 174/337 (51%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++   L + +      KVA++  +    +G  P+  S    I  LC SG    A
Sbjct: 158 GIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSGNTNMA 217

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKLYH-----DLIESGYLIQA 208
              F K+++ G   ++ T+N+ +    K     D  D + ++       D I    ++  
Sbjct: 218 VHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHG 277

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+++E   L +++ ++G  P+   +N +I    + +     ++ L  MV +   PD
Sbjct: 278 LCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPD 337

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLC   +  EA R+F  ++++G  PD V Y T+I  LCK   + DA +   
Sbjct: 338 VVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLS 397

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G+ PN  TY++++HG+C +  L+EA +L KEM+ +     T+T++ L+ GLC  G
Sbjct: 398 EMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEG 457

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA  +FE M +KG+  ++ TYN L+ GYC   K+
Sbjct: 458 MVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKM 494



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 186/360 (51%), Gaps = 13/360 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L    N  +++  F+ +  + G  P++V+ N + DSL + R    AMDFL      G  P
Sbjct: 208 LCNSGNTNMAVHVFKKMEQN-GCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPP 266

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLV 192
           +  +    +  LC  G + EA   F ++++ G    + T+N  +    K     D  D +
Sbjct: 267 DAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFL 326

Query: 193 WKLYH-----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
            ++       D++    ++   C  G+++E   L +++ + G  P+  A+N +I   C+ 
Sbjct: 327 SEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKD 386

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           +      E L  MV R   P+  TY  +++G C   +  EA ++F ++  R  +P+T+ +
Sbjct: 387 RLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTF 446

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           + ++ GLC+ G + +AR ++  M  KG+ PN YTYN++++GYC    + EA+++ + M+ 
Sbjct: 447 SILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVG 506

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           KG      +YN LI G C   R D+A  L  +M+ K +  + +TYNT+++G C  G++++
Sbjct: 507 KGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLD 566



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 163/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V       S+ + + +   +   + +D  G +    SL + I CLC    ++ A   
Sbjct: 91  PSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSV 150

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           + K+ ++G+   + T+ + + G     +  +  +LY++++ SG+         LI   CN
Sbjct: 151 WGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCN 210

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G  +    + +++ ++G  P    +N +I   C+ +      + L  MV R   PD  T
Sbjct: 211 SGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAIT 270

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++GLC   +  EA R+F  +++ G  PD V Y  +I  L K   + DA     EM+
Sbjct: 271 YNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMV 330

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ P+  TY +++HG C +  L EA RL K+M  KG     V YNT+I  LC     +
Sbjct: 331 DQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVN 390

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A     EM  +GI  + +TY+T++ G+C  G++
Sbjct: 391 DAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQL 424



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 171/349 (48%), Gaps = 13/349 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           + R F+ +  + G  PD+V+ N++ DSL + R    A DFL      G  P+  +    +
Sbjct: 287 ATRLFKRMEQN-GCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTIL 345

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC  G + EA   F K+++ G    +  +N+ +    K    +   +   ++++ G  
Sbjct: 346 HGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIP 405

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   ++  FCN G++ E  +L ++++   ++P    F+ L+   C++        +
Sbjct: 406 PNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWV 465

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             TM  +   P+ +TY  ++NG C   K  EA +VF  +  +G  PD   Y  +I+G C 
Sbjct: 466 FETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILINGYCN 525

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              +  A+ +  +M  K L PN  TYN+++ G C +  L +A+ L K+M   G   T +T
Sbjct: 526 SRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMT 585

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y+ L+ GLC HG  DEA  LF+ M +K +  D+I Y  LI+G    GK+
Sbjct: 586 YSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKL 634



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 162/338 (47%), Gaps = 30/338 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +IR F+ +    G  PD+V+ N + DSL + R    AM+FL      G  PN  +    +
Sbjct: 357 AIRLFKKMEQK-GCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTIL 415

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
              C  G ++EA   F ++    V  +  T++                           L
Sbjct: 416 HGFCNLGQLDEATQLFKEMVGRNVMPNTLTFS--------------------------IL 449

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +   C +G VSE   +   + E G+ P    +N L++ +C +       ++   MV +  
Sbjct: 450 VDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGC 509

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           APD  +Y  +ING C SR+  +A  +   +  +   P+TV Y T++ GLC +G L DA++
Sbjct: 510 APDLHSYNILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQE 569

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M   G+LP   TY+ +++G C+  +L+EA +L K M +K      + Y  LI G+ 
Sbjct: 570 LFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMF 629

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + G+ + A  LF +++  GI     TYN +I+G  KEG
Sbjct: 630 IGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEG 667



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 112/229 (48%), Gaps = 1/229 (0%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++E G  + +     + S    L  Q+   G+     + N LI+  C   +      +  
Sbjct: 93  IVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRLNHVDFAVSVWG 152

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M      PD  T+  +ING+C   K   A  ++N++   G+ PD + Y T+I+GLC  G
Sbjct: 153 KMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISYNTLINGLCNSG 212

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A  ++ +M   G  PN  TYN++I   C+   + +A     EM+ +G     +TYN
Sbjct: 213 NTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYN 272

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +++ GLC  G+ +EA  LF+ M Q G   DV+TYN +I    K+ ++VN
Sbjct: 273 SIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYKD-RLVN 320



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 49/170 (28%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M   N  P    + + +  + K ++      + N +   G          +I+ LC++
Sbjct: 82  YRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILINCLCRL 141

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A  +W +M   G+ P+  T+ ++I+G C    ++ A  L+ EM+  G+    ++Y
Sbjct: 142 NHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVRSGHEPDVISY 201

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           NTLI GLC  G T+ A H+F++M Q G   +V+TYNT+I   CK+ ++VN
Sbjct: 202 NTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKD-RLVN 250



 Score = 47.8 bits (112), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 45/104 (43%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA   ++ M      P+   +   +    ++        L  +M   G   T  + N LI
Sbjct: 76  DALASFYRMARMNPRPSIVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYSLNILI 135

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             LC     D A  ++ +M + GI  DVIT+ TLI G C EGKI
Sbjct: 136 NCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKI 179


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 166/341 (48%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+   L   L        A+DF      T   PN  +    +  LC  G I
Sbjct: 141 TKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKID---------RTDLVWKLYHDLIESGY 204
            EA     ++ E G+  +  T+ + + G C K D         + + V  +  +++    
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I + C DG+ S+   L  ++ E G+ P+   +N +I  FC    +    +LL  M+ R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  +IN   K  K  EA  +++++  RG +P+T+ Y ++I G CK   L  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 380

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M++ M  KG  P+ +T+ ++I GYC    +++   L  EM  +G    TVTYNTLI G 
Sbjct: 381 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 440

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           CL G  + A  L ++M   G+  D++T NTL+ G C  GK+
Sbjct: 441 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 481



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 10/296 (3%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F K+ ++G+   + T+ + L G    DR       +H +
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 200 IES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            E+           L+   C +G++ E   LL +++EDGL P    +  ++   C+K + 
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 251 GRVSELLHTM-VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                LL  M    +  P+   Y  +I+ LCK  +  +A  +F +++E+G  PD   Y +
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C  G   DA ++  EM+ + + P+  TYN++I+ + +     EA  L+ EML +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRG 355

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+TYN++I G C   R D A  +F  MA KG   DV T+ TLI GYC   +I
Sbjct: 356 IIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRI 411



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 164/341 (48%), Gaps = 41/341 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P  ++   + D + +      A++ L    + +   PN       I  LC+ G   +
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A   F++++E G+F  + T+NS ++G                          FC+ G+ S
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVG--------------------------FCSSGRWS 307

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +  +LL+++LE  + P+   +N LI+ F ++  F   +EL   M+ R   P+  TY  +I
Sbjct: 308 DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 367

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G CK  +   A  +F  +  +G  PD   +TT+I G C    + D  ++  EM  +GL+
Sbjct: 368 DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 427

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            N  TYN++IHG+C + +L  A  L ++M+  G     VT NTL+ GLC +G+  +A  +
Sbjct: 428 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEM 487

Query: 397 FEEMAQK-----------GIFRDVITYNTLIQGYCKEGKIV 426
           F+ M +            G+  DV+TYN LI G   EGK +
Sbjct: 488 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFL 528



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 161/348 (46%), Gaps = 23/348 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL + N +      +  +  A   L        SP+  +    I    + G   EA
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              + ++   G+  +  T+NS + G  K DR D    +++ +   G          LI  
Sbjct: 345 AELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++   GLV     +N LI  FC   +     +L   M++    PD
Sbjct: 405 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 464

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER-----------GYVPDTVMYTTVIHGLCKM 317
             T   +++GLC + K  +A  +F  +++            G  PD + Y  +I GL   
Sbjct: 465 IVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINE 524

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +    VT+
Sbjct: 525 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 584

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NTLI G C  GR D+   LF EM ++GI  D I Y TLI G+ K G I
Sbjct: 585 NTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNI 632



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 153/341 (44%), Gaps = 23/341 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 380

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G    + T+ + + G     R D   +L H++   G          LI  F
Sbjct: 381 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 440

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
           C  G ++   +L +Q++  G+ P+    N L+   C+        E+   M         
Sbjct: 441 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 500

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 501 SHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+N++I+GYC+   +++   L  EM  +G     + Y 
Sbjct: 561 RLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYI 620

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           TLI G    G  + A  +F+EM   G++ D IT   ++ G+
Sbjct: 621 TLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 661



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 143/317 (45%), Gaps = 45/317 (14%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +E+A   FS +       S+  +   +   ++++R DLV  LY          D+     
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+ FC+  K+        ++ + GL P+   F  L+   C +       +  H M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  ++NGLC+  + +EA  + + + E G  P  + Y T++ G+CK G      
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 321 --------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                            DA+ ++ EM  KG+ P+ +TYNSMI G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C      +A++L +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 359

Query: 409 VITYNTLIQGYCKEGKI 425
            ITYN++I G+CK+ ++
Sbjct: 360 TITYNSMIDGFCKQDRL 376



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 145/323 (44%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ N + D   +      A D    + + G SP+  +    I   C +  I++ 
Sbjct: 355 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDG 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G+  +  T+N+ + G   +   +    L   +I SG          L+  
Sbjct: 415 MELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 474

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LI     +  F    EL 
Sbjct: 475 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELY 534

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F  +  + + P+ V + T+I+G CK 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 594

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ +   Y ++I+G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 595 GRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 654

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
             ++ G       + A  + E++
Sbjct: 655 RNMLTGFWSKEELERAVAMLEDL 677



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 49  KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +  +I   C    L  A   + ++   GL P+  T+ +++HG C  D + EA
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEA 168

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                +M +       VT+ TL+ GLC  GR  EA  L + M + G+    ITY T++ G
Sbjct: 169 LDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 419 YCKEGKIVN 427
            CK+G  V+
Sbjct: 229 MCKKGDTVS 237



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 23/219 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----------LDST----GFSPNPNSLELYIQ 146
           G  PD+V+CN L D L +    K A++           LD++    G  P+  +  + I 
Sbjct: 460 GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 519

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            L   G   EA   + ++   G+     T++S + G  K  R D   +++  +    +  
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 579

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI  +C  G+V +G EL  ++   G+V +   +  LI  F +  N     ++ 
Sbjct: 580 NVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIF 639

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M++    PD  T   ++ G     +   A  +  DL+
Sbjct: 640 QEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 678


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 168/349 (48%), Gaps = 12/349 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYI 145
           ++     +   +G   D  + N L + LV+    K   +    + S G  P+  +  + I
Sbjct: 159 AVAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILI 218

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
           + LC +  I  A     ++   G+    KT+ + + G I+    +   ++   ++ +G  
Sbjct: 219 KALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCP 278

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+  +C +G++ E    + ++  +G  P+   FN L++  C   +     E+
Sbjct: 279 SSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEI 338

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M+     PD FTY  +I GLCK  +  EA  + N +  R + P+TV Y T+I  LCK
Sbjct: 339 LDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCK 398

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A ++   +  KG+LP+  T+NS+I G C  +N   A  L +EM  KG      T
Sbjct: 399 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFT 458

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           YN LI  LC  GR +EA  L +EM   G  R+V+TYNTLI G+CK  +I
Sbjct: 459 YNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRI 507



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 159/338 (47%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNS---LELYIQCLCESGLIEE 156
           YG SPD  +   L    +E      A+   +    +  P+S   + + +   C+ G IEE
Sbjct: 240 YGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEE 299

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                 ++   G      T+NS + G  +I       ++   +++ G+         LI 
Sbjct: 300 VLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIF 359

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G+V E  E+L Q++     P    +N LIS  C++      +EL   + ++   P
Sbjct: 360 GLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILP 419

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  +I GLC +     A  +F ++K +G  PD   Y  +I  LC  G L +A  + 
Sbjct: 420 DVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLL 479

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G   N  TYN++I G+C+   +EEA+ +  EM  +G     VTYNTLI GLC +
Sbjct: 480 KEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCKN 539

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            R +EA  L ++M  +G+  D  TYN+L+  +C+ G I
Sbjct: 540 RRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDI 577



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 157/332 (47%), Gaps = 14/332 (4%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           V+ NVL     +    +  + F+D   + GF P+  +    +  LC  G ++ A      
Sbjct: 282 VTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDV 341

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           + + G    I T+NS + G  K+   +   ++ + +I   +         LI   C + +
Sbjct: 342 MLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQ 401

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V E  EL R +   G++P+   FN LI   C   N     EL   M  +   PD FTY  
Sbjct: 402 VEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNM 461

Query: 275 VINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
           +I+ LC SR RLE A  +  +++  G   + V Y T+I G CK   + +A +++ EM  +
Sbjct: 462 LIDSLC-SRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQ 520

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G+  N  TYN++I G C+   +EEA +L  +ML +G      TYN+L+   C  G   +A
Sbjct: 521 GISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKA 580

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + + M   G   D +TY TLI G  K G++
Sbjct: 581 ADIVQTMTSNGCEPDSVTYGTLILGLSKAGRV 612



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 153/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+ + N L   L +    + A++ L+      FSPN  +    I  LC+   +EEA
Sbjct: 346 GFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEA 405

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G+   + T+NS + G    +   L  +L+ ++   G          LI +
Sbjct: 406 TELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDS 465

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G++ E   LL+++   G       +N LI  FC+ K      E+   M  +  + +
Sbjct: 466 LCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRN 525

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+R+  EA ++ + +   G  PD   Y +++   C+ G +  A  +  
Sbjct: 526 VVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQ 585

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  P+  TY ++I G  +   +E A RL + +  KG      TYN +I  L    
Sbjct: 586 TMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREK 645

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           RT EA  LF EM +KG   D +TY  + +G C  G
Sbjct: 646 RTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGG 680



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/355 (25%), Positives = 163/355 (45%), Gaps = 16/355 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSP 136
           L ++N V  +    + L S  G  PD+ + N L   L      ++AM+  +   + G  P
Sbjct: 396 LCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHP 454

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +  + I  LC  G +EEA     +++  G   ++ T+N+ + G  K  R +   +++
Sbjct: 455 DEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIF 514

Query: 197 HDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
            ++   G          LI   C + +V E  +L+ Q+L +GL P+   +N L++ FC  
Sbjct: 515 DEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRA 574

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
            +  + ++++ TM +    PD+ TY  +I GL K+ +   A R+   ++ +G V     Y
Sbjct: 575 GDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTY 634

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEML 366
             VI  L +     +A +++ EM+ KG  P+  TY  +  G C     + EA     EM 
Sbjct: 635 NPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMT 694

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           DKG+     ++  L  GLC     D    L   + ++  F D  +  ++I G+ K
Sbjct: 695 DKGFLPDFSSFLMLAEGLCALSMEDTLIKLVNRVMKQANFSD--SEVSMIMGFLK 747



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/198 (24%), Positives = 73/198 (36%), Gaps = 36/198 (18%)

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK------- 316
           N  P +  YEEV+  L K        RV  ++K  G       +  +I    K       
Sbjct: 100 NFVPSSVIYEEVLRKLGKDGSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEA 159

Query: 317 -----------------------MGWLGDARKMWF------EMIHKGLLPNEYTYNSMIH 347
                                  +  L D  K+         M+ +G+ P+  T+N +I 
Sbjct: 160 VAVVDIMEEEFGLKLDAFTYNFLLNVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIK 219

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             CR   +  A  + +EM   G      T+ TL+ G    G  + A  + E+M   G   
Sbjct: 220 ALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPS 279

Query: 408 DVITYNTLIQGYCKEGKI 425
             +T N L+ GYCKEG+I
Sbjct: 280 SNVTVNVLVHGYCKEGRI 297



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 43/199 (21%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDL----KERGYVPDTVMYTTVIHGLCKMGWLGD 322
           P NFT +++ + L   R++ +   + + L    K+  +VP +V+Y  V+  L K G  G 
Sbjct: 67  PQNFTPKQLRDAL---RRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKDGSFGS 123

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA------------------------ 358
            R++  EM H G      T+  +I  Y + +  +EA                        
Sbjct: 124 MRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLL 183

Query: 359 ------------KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
                       + ++  M+ +G      T+N LI  LC   +   A  + EEM   G+ 
Sbjct: 184 NVLVDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLS 243

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D  T+ TL+QG+ +EG +
Sbjct: 244 PDEKTFTTLMQGFIEEGNM 262


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 165/335 (49%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  PD+ + N+L +S    R    AF V    L   G  P+  +    I+ LC  G I 
Sbjct: 141 FGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL-KLGCQPDNTTFNTLIRGLCVEGKIG 199

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           EA   F K    G    + T+ + + G  K+  T    +L   +++            +I
Sbjct: 200 EALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTII 259

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + L  +++  G+ P+   +N LI   C    +  V+ LL+ MV     
Sbjct: 260 DSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIM 319

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+   +  V++ LCK      A+ V + + +RG  PD V YT ++ G C    + +A K+
Sbjct: 320 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 379

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+HKG +PN  +YN +I+GYC+I  +++A  L ++M  +G    TVTYNTLI GLC 
Sbjct: 380 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 439

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR   A  LF EM   G   D++TY  L+   CK
Sbjct: 440 VGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 474



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 165/347 (47%), Gaps = 16/347 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P  V    L  S+ + + +   +     +DS G  P+  +L + I   
Sbjct: 100 FNRMLHMHP--PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSF 157

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIK---------IDRTDLVWKLYHD 198
           C    +  AF   +KL ++G      T+N+ + G C++          D+T +      D
Sbjct: 158 CHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKT-IGEGFQPD 216

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++  G L+   C  G  S    LLR +++    P   A+N +I   C+ +       L  
Sbjct: 217 VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFS 276

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ +  +PD FTY  +I+ LC   +      + N++     +P+ V+++TV+  LCK G
Sbjct: 277 EMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 336

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A  +   MI +G+ P+  TY +++ G+C    ++EA ++   M+ KG      +YN
Sbjct: 337 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 396

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LI G C   R D+A  L E+M+ +G+  D +TYNTLI G C  G++
Sbjct: 397 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRL 443



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/316 (25%), Positives = 148/316 (46%), Gaps = 12/316 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+   L + L +      A+  L S       PN  +    I  LC+   + EA
Sbjct: 212 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 271

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+   I T+NS +     +     V  L ++++ S  +         + A
Sbjct: 272 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 331

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G ++  ++++  +++ G+ P+   +  L+   C +       ++  TMV +   P+
Sbjct: 332 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 391

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING C+ ++  +A  +   +  +G + DTV Y T+IHGLC +G L  A  ++ 
Sbjct: 392 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 451

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  ++   C+  +L EA  L K +         + YN  I G+C  G
Sbjct: 452 EMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAG 511

Query: 389 RTDEAYHLFEEMAQKG 404
             + A  LF  ++ +G
Sbjct: 512 ELEAARDLFSNLSCQG 527


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 174/334 (52%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSL-VEARAFK--VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDLV+ + L + L ++ R  +  V +D +   GF P+  +    +  LC+SG    A   
Sbjct: 202 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 261

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F K++E  +  S+  ++  +    K    D    L++         D++    LI   CN
Sbjct: 262 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 321

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGK  +G ++LR+++   ++P+   F+ LI  F ++       EL + M+ R  APD  T
Sbjct: 322 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 381

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK     EA ++F+ +  +G  PD V Y+ +I+  CK   + D  +++ E+ 
Sbjct: 382 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 441

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL+PN  TYN+++ G+C+   L  AK L +EM+ +G   + VTY  L+ GLC +G  +
Sbjct: 442 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 501

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  +FE+M +  +   +  YN +I G C   K+
Sbjct: 502 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 535



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 172/368 (46%), Gaps = 47/368 (12%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
            YGF PD V+   + + L ++    +A+D    ++      +     + I  LC+ G  +
Sbjct: 232 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 291

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGC---------IKIDRTDLVWKLYHDLIESGYLI 206
           +A   F++++  G+   + T++S + G           K+ R  +   +  D++    LI
Sbjct: 292 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 351

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             F  +GK+ E  EL  +++  G+ P+   +N LI  FC++      +++   MV++   
Sbjct: 352 DVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCE 411

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +IN  CK+++  +  R+F ++  +G +P+T+ Y T++ G C+ G L  A+++
Sbjct: 412 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 471

Query: 327 WFEMIHKGLLPNEYTY-----------------------------------NSMIHGYCR 351
           + EM+ +G+ P+  TY                                   N +IHG C 
Sbjct: 472 FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 531

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +++A  L   + DKG     VTYN +I GLC  G   EA  LF +M + G   D  T
Sbjct: 532 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFT 591

Query: 412 YNTLIQGY 419
           YN LI+ +
Sbjct: 592 YNILIRAH 599



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/236 (36%), Positives = 123/236 (52%), Gaps = 8/236 (3%)

Query: 192 VWKLYH--DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
            WKL +  D I    L+  FC +G+VSE   L+ +++E    P+    + LI+  C K  
Sbjct: 160 AWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK-- 217

Query: 250 FGRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            GRVSE   L+  MV     PD  TY  V+N LCKS     A  +F  ++ER      V 
Sbjct: 218 -GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQ 276

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+ VI  LCK G   DA  ++ EM  KG+  +  TY+S+I G C     ++  ++ +EM+
Sbjct: 277 YSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 336

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            +      VT++ LI      G+  EA  L+ EM  +GI  D ITYN+LI G+CKE
Sbjct: 337 GRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 392



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE- 255
           HD+     +I  +C   K+   + +L +  + G  P+   F+ L++ FC +   GRVSE 
Sbjct: 132 HDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE---GRVSEA 188

Query: 256 --LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L+  MV   + PD  T   +INGLC   +  EA  + + + E G+ PD V Y  V++ 
Sbjct: 189 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 248

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G    A  ++ +M  + +  +   Y+ +I   C+  + ++A  L  EM  KG    
Sbjct: 249 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 308

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            VTY++LI GLC  G+ D+   +  EM  + I  DV+T++ LI  + KEGK++
Sbjct: 309 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 361



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 29/284 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD ++ N L D   +      A    D + S G  P+  +  + I   C++  +++ 
Sbjct: 374 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 433

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F ++   G+  +  T+N+ +LG                          FC  GK++ 
Sbjct: 434 MRLFREISSKGLIPNTITYNTLVLG--------------------------FCQSGKLNA 467

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             EL ++++  G+ P    +  L+   C+     +  E+   M           Y  +I+
Sbjct: 468 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 527

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G+C + K  +A+ +F  L ++G  PD V Y  +I GLCK G L +A  ++ +M   G  P
Sbjct: 528 GMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 587

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +++TYN +I  +     L  +  L +EM   G+   + T   +I
Sbjct: 588 DDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVI 631



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 35/248 (14%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D KV++  +L   +++   +P    FN+L S     K +  V      M       D +T
Sbjct: 77  DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 136

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY------------------------ 307
              +IN  C+ +K L A+ V     + GY PDT+ +                        
Sbjct: 137 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 196

Query: 308 -----------TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                      +T+I+GLC  G + +A  +   M+  G  P+E TY  +++  C+  N  
Sbjct: 197 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 256

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A  L ++M ++    + V Y+ +I  LC  G  D+A  LF EM  KGI  DV+TY++LI
Sbjct: 257 LALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 316

Query: 417 QGYCKEGK 424
            G C +GK
Sbjct: 317 GGLCNDGK 324


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 168/337 (49%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAF 158
           GF+PD ++   L + L +      A D        P P S+     I      G +++A 
Sbjct: 311 GFTPDDITYGYLMNGLCKIGRVDAAKDLFYRI---PKPTSVIFNTLIHGFVTHGRLDDAK 367

Query: 159 CAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              S +    G+   + T+NS + G  K     L  ++  D+   G          L+  
Sbjct: 368 AVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDG 427

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ E Y LL ++  DGL P    FN LIS FC++       E+   M  +   PD
Sbjct: 428 FCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 487

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +I+GLC+  +   A  +  D+   G V +TV Y T+I+   + G + +ARK+  
Sbjct: 488 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 547

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G L +E TYNS+I G CR   +++A+ L ++ML  G   ++++ N LI GLC  G
Sbjct: 548 EMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSG 607

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +EA    +EM  +G   D++T+N+LI G C+ G+I
Sbjct: 608 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 644



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 160/332 (48%), Gaps = 12/332 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           + YG  PD+ + N L     +     +A++ L    + G  PN  S  + +   C+ G I
Sbjct: 375 TSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKI 434

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           +EA+   +++   G+  +   +N  +    K  R     +++ ++   G          L
Sbjct: 435 DEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 494

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   ++     LLR ++ +G+V     +N LI+ F  +       +L++ MV +  
Sbjct: 495 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 554

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  +I GLC++ +  +A  +F  +   G VP ++    +I+GLC+ G + +A +
Sbjct: 555 LLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVE 614

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
              EM+ +G  P+  T+NS+I+G CR   +E+   + +++  +G    TVTYNTL++ LC
Sbjct: 615 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLC 674

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             G   +A  L +E  + G   +  T++ L+Q
Sbjct: 675 KGGFVYDACLLLDEGIEDGFVPNDRTWSILLQ 706



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 32/264 (12%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           K+   L   G +++A C   +V     +LR + + G VP +  +  LI    +       
Sbjct: 206 KIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEA 265

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +LL  M      PD  T+ +VI GLCK  +  EA ++ N +  RG+ PD + Y  +++G
Sbjct: 266 LQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNG 325

Query: 314 LCKMGWLGDARKMWFE-----------MIHK---------------------GLLPNEYT 341
           LCK+G +  A+ +++            +IH                      G++P+  T
Sbjct: 326 LCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCT 385

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YNS+I+GY +   +  A  + ++M +KG      +Y  L+ G C  G+ DEAY+L  EM+
Sbjct: 386 YNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMS 445

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G+  + + +N LI  +CKE +I
Sbjct: 446 ADGLKPNTVGFNCLISAFCKEHRI 469



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ S  +L D   +      A + L+   + G  PN       I   C+   I EA
Sbjct: 413 GCKPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 472

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++   G    + T+NS + G  ++D       L  D+I  G          LI A
Sbjct: 473 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 532

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G++ E  +L+ +++  G + +   +N LI   C      +   L   M+     P 
Sbjct: 533 FLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGLVPS 592

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + +   +INGLC+S    EA     ++  RG  PD V + ++I+GLC+ G + D   M+ 
Sbjct: 593 SISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 652

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +G+ P+  TYN+++   C+   + +A  L  E ++ G+     T++ L+  L
Sbjct: 653 KLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSILLQSL 708



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 155/360 (43%), Gaps = 27/360 (7%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SF+   P    + L+   +V  S+  F W  S  G+        VL   L     FK   
Sbjct: 66  SFHKITPFQLCKLLELPLDVSTSMELFSWTGSQKGYRHSFDVYQVLIGKLGSNGEFK--- 122

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
                        +++  +  + + G++ +     S +++    G        +L    +
Sbjct: 123 -------------TIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNV 169

Query: 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +  +K Y+ ++E   L+   C+    +  Y++L + +     P    F  ++   C 
Sbjct: 170 YSCEPTFKSYNVVLE--ILVSGNCHKVAANVFYDMLSRKIP----PTLFTFGVVMKALCA 223

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    +L  M      P++  Y+ +I+ L K  +  EA ++  ++   G VPD   
Sbjct: 224 VNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAET 283

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +  VI GLCK   + +A KM   M+ +G  P++ TY  +++G C+I  ++ AK L   + 
Sbjct: 284 FNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLFYRIP 343

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
                 T+V +NTLI G   HGR D+A  +  +M    GI  DV TYN+LI GY K+G +
Sbjct: 344 KP----TSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLV 399



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 121/271 (44%), Gaps = 12/271 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  P+ V  N L  +  +      A++    +   G  P+  +    I  LCE   I
Sbjct: 445 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 504

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------- 205
           + A      +   GV  +  T+N+ +   ++        KL ++++  G L         
Sbjct: 505 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSL 564

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+  C  G+V +   L  ++L DGLVP + + N LI+  C         E    MV R  
Sbjct: 565 IKGLCRAGEVDKARSLFEKMLRDGLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGS 624

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  T+  +INGLC++ +  +   +F  L+  G  PDTV Y T++  LCK G++ DA  
Sbjct: 625 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACL 684

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           +  E I  G +PN+ T++ ++      + L+
Sbjct: 685 LLDEGIEDGFVPNDRTWSILLQSLVPQETLD 715



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 29/155 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  +SCN+L + L  +   + A++F       G +P+  +    I  LC +G IE+ 
Sbjct: 588 GLVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDG 647

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F KL+  G+     T+N+                          L+   C  G V +
Sbjct: 648 LTMFRKLQAEGIPPDTVTYNT--------------------------LMSWLCKGGFVYD 681

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
              LL + +EDG VP +  ++ L+     ++   R
Sbjct: 682 ACLLLDEGIEDGFVPNDRTWSILLQSLVPQETLDR 716


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/335 (31%), Positives = 165/335 (49%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  PD+ + N+L +S    R    AF V    L   G  P+  +    I+ LC  G I 
Sbjct: 179 FGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL-KLGCQPDNTTFNTLIRGLCVEGKIG 237

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           EA   F K    G    + T+ + + G  K+  T    +L   +++            +I
Sbjct: 238 EALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTII 297

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + L  +++  G+ P+   +N LI   C    +  V+ LL+ MV     
Sbjct: 298 DSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIM 357

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+   +  V++ LCK      A+ V + + +RG  PD V YT ++ G C    + +A K+
Sbjct: 358 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 417

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+HKG +PN  +YN +I+GYC+I  +++A  L ++M  +G    TVTYNTLI GLC 
Sbjct: 418 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 477

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR   A  LF EM   G   D++TY  L+   CK
Sbjct: 478 VGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCK 512



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 165/347 (47%), Gaps = 16/347 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P  V    L  S+ + + +   +     +DS G  P+  +L + I   
Sbjct: 138 FNRMLHMHP--PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSF 195

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIK---------IDRTDLVWKLYHD 198
           C    +  AF   +KL ++G      T+N+ + G C++          D+T +      D
Sbjct: 196 CHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKT-IGEGFQPD 254

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++  G L+   C  G  S    LLR +++    P   A+N +I   C+ +       L  
Sbjct: 255 VVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEAFNLFS 314

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ +  +PD FTY  +I+ LC   +      + N++     +P+ V+++TV+  LCK G
Sbjct: 315 EMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEG 374

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A  +   MI +G+ P+  TY +++ G+C    ++EA ++   M+ KG      +YN
Sbjct: 375 MIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYN 434

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LI G C   R D+A  L E+M+ +G+  D +TYNTLI G C  G++
Sbjct: 435 ILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRL 481



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+   L + L +      A+  L S       PN  +    I  LC+   + EA
Sbjct: 250 GFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKDRQVTEA 309

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+   I T+NS +     +     V  L ++++ S  +         + A
Sbjct: 310 FNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDA 369

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G ++  ++++  +++ G+ P+   +  L+   C +       ++  TMV +   P+
Sbjct: 370 LCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPN 429

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING C+ ++  +A  +   +  +G + DTV Y T+IHGLC +G L  A  ++ 
Sbjct: 430 VRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFH 489

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  ++   C+  +L EA  L K +         + YN  I G+C  G
Sbjct: 490 EMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAG 549

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  ++ KG+  DV TYN +I G CK G
Sbjct: 550 ELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRG 584



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 148/335 (44%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + N L  +L     +K     L+   ++   PN       +  LC+ G+I  A
Sbjct: 320 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIA 379

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + + GV   + T+ + + G       D   K++  ++  G          LI  
Sbjct: 380 HDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILING 439

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +   LL Q+   GL+ +   +N LI   C          L H MVA  + PD
Sbjct: 440 YCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPD 499

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+    EA  +   ++      D ++Y   I G+C+ G L  AR ++ 
Sbjct: 500 LVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFS 559

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL P+  TYN MIHG C+   L+EA +L ++M + G       YNT+I G     
Sbjct: 560 NLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSN 619

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            T  A  L +EM  +G   DV T   +++    +G
Sbjct: 620 ETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDDG 654


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  178 bits (451), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 4/256 (1%)

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
           K +G F   K +++ +  C ++D    ++++ H++     LI   C    V     +L +
Sbjct: 98  KFLGSFAKKKQYSTVVSLCNQMD----LFRVTHNVYSLNILINCLCRLNHVDFSVSVLGK 153

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + + G+ P+   FN LI+  C +       EL + MV R   P+  +Y  VINGLCK+  
Sbjct: 154 MFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGN 213

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A  VF  +++ G  P+ V Y+T+I  LCK   + DA +   EM+ +G+ PN +TYNS
Sbjct: 214 TSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNS 273

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++HG+C +  L EA RL KEM+ +     TVT+  L+ GLC  G   EA  +FE M +KG
Sbjct: 274 IVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKG 333

Query: 405 IFRDVITYNTLIQGYC 420
           +  D+ TYN L+ GYC
Sbjct: 334 VEPDISTYNALMDGYC 349



 Score =  177 bits (450), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 182/363 (50%), Gaps = 27/363 (7%)

Query: 81  KQQNNVLLSI----RFFQWLHSHYGFSPDLVSC-----NVLFDSLVEARAFKVAMDFLDS 131
           K+Q + ++S+      F+  H+ Y  +  L++C     +V F   V  + FK+       
Sbjct: 106 KKQYSTVVSLCNQMDLFRVTHNVYSLNI-LINCLCRLNHVDFSVSVLGKMFKL------- 157

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P+  +    I  LC  G I+EA   F+++ + G   ++ ++ + + G  K   T +
Sbjct: 158 -GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSM 216

Query: 192 VWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
              ++  + ++G          +I + C D  V++  E L +++E G+ P    +N ++ 
Sbjct: 217 AVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVH 276

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC        + L   MV R+  P+  T+  +++GLCK     EA  VF  + E+G  P
Sbjct: 277 GFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEP 336

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   Y  ++ G C    + +A+K++  MI KG  P  ++YN +I+GYC+   ++EAK L 
Sbjct: 337 DISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLL 396

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            EM  K     TVTY+TL+ GLC  GR  EA +LF+EM   G   +++TY  L+ G+CK 
Sbjct: 397 AEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKH 456

Query: 423 GKI 425
           G +
Sbjct: 457 GHL 459



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 169/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+++S   + + L +     +A+D    ++  G  PN  +    I  LC+  L+ +A
Sbjct: 193 GHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDA 252

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               S++ E G+  ++ T+NS + G   + + +   +L+ +++             L+  
Sbjct: 253 MEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDG 312

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G VSE   +   + E G+ P+ + +N L+  +C ++      ++   M+ +  AP 
Sbjct: 313 LCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPG 372

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CKSR+  EA  +  ++  +   PDTV Y+T++ GLC++G   +A  ++ 
Sbjct: 373 AHSYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFK 432

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G  PN  TY  ++ G+C+  +L+EA +L K M +K      V Y  LI G+ + G
Sbjct: 433 EMCSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAG 492

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + + A  LF ++   G   D+ TY  +I+G  KEG
Sbjct: 493 KLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEG 527



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 159/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD ++ N L + L      K A++  +     G  PN  S    I  LC++G    A
Sbjct: 158 GIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLCKTGNTSMA 217

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F K+++ G   ++ T+++ +    K    +   +   +++E G          ++  
Sbjct: 218 VDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHG 277

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FCN G+++E   L ++++   ++P    F  L+   C++        +  TM  +   PD
Sbjct: 278 FCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPD 337

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C  R   EA +VF  +  +G  P    Y  +I+G CK   + +A+ +  
Sbjct: 338 ISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLA 397

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM HK L P+  TY++++ G C++   +EA  L KEM   G     VTY  L+ G C HG
Sbjct: 398 EMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHG 457

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             DEA  L + M +K +  +++ Y  LI+G    GK+
Sbjct: 458 HLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKL 494



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 93/387 (24%), Positives = 166/387 (42%), Gaps = 54/387 (13%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L +  N  +++  F+ +  + G  P++V+ + + DSL + R    AM+FL      G  P
Sbjct: 208 LCKTGNTSMAVDVFKKMEQN-GCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPP 266

Query: 137 N---------------------------------PNSLE--LYIQCLCESGLIEEAFCAF 161
           N                                 PN++   + +  LC+ G++ EA   F
Sbjct: 267 NVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVF 326

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCND 212
             + E GV   I T+N+ + G       +   K++  +I  G          LI  +C  
Sbjct: 327 ETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKS 386

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNRAPDN 269
            ++ E   LL ++    L P+   ++ L+   C+    GR  E   L   M +    P+ 
Sbjct: 387 RRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQ---LGRPKEALNLFKEMCSYGPHPNL 443

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++G CK     EA ++   +KE+   P+ V YT +I G+   G L  A++++ +
Sbjct: 444 VTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSK 503

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +   G  P+  TY  MI G  +    +EA  L ++M D G+   + +YN +I G   +  
Sbjct: 504 LFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQD 563

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +  A  L +EM  K    ++ T+  L+
Sbjct: 564 SSTAIRLIDEMVGKRFSVNLSTFQMLL 590



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/216 (27%), Positives = 107/216 (49%), Gaps = 4/216 (1%)

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C D  ++  Y ++R        P    F K +  F +KK +  V  L + M       + 
Sbjct: 73  CVDDALASFYRMVRI----NPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNV 128

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           ++   +IN LC+      +  V   + + G  PD + +  +I+GLC  G + +A +++ E
Sbjct: 129 YSLNILINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNE 188

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ +G  PN  +Y ++I+G C+  N   A  + K+M   G     VTY+T+I  LC    
Sbjct: 189 MVKRGHEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRL 248

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++A     EM ++GI  +V TYN+++ G+C  G++
Sbjct: 249 VNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQL 284



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/171 (26%), Positives = 86/171 (50%), Gaps = 1/171 (0%)

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + MV  N  P    + + +    K ++      + N +       +      +I+ LC+
Sbjct: 81  FYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNILINCLCR 140

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +  +  +  +  +M   G+ P+  T+N++I+G C    ++EA  L  EM+ +G+    ++
Sbjct: 141 LNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVIS 200

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           Y T+I GLC  G T  A  +F++M Q G   +V+TY+T+I   CK+ ++VN
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKD-RLVN 250



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/191 (20%), Positives = 88/191 (46%), Gaps = 12/191 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLE--LYIQCLCESGLIE 155
           H   +PD V+ + L   L +    K A++ F +   + P+PN +   + +   C+ G ++
Sbjct: 401 HKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLD 460

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           EA      +KE  +  +I  +   + G     + ++  +L+  L   G          +I
Sbjct: 461 EALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYTVMI 520

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +    +G   E Y+L R++ +DG +P + ++N +I  F + ++      L+  MV +  +
Sbjct: 521 KGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGFLQNQDSSTAIRLIDEMVGKRFS 580

Query: 267 PDNFTYEEVIN 277
            +  T++ +++
Sbjct: 581 VNLSTFQMLLD 591


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 171/336 (50%), Gaps = 16/336 (4%)

Query: 103 SPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           SP +V+ N L D L       RA  +  + LD    S +  S  + +  LC +G IE A 
Sbjct: 42  SPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRR--SHDVISFNILVTGLCRAGKIETAL 99

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
             F K+ +     ++ T++  + G  K +R     +L           D+I    L+   
Sbjct: 100 EFFRKMDDR-CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGL 158

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C + KV+  +E+LR++L+ G VP    +N L+   C  +       L+  M  R   P+ 
Sbjct: 159 CKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNV 218

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+GLCK  +  +A  +  D+ ++G  PD ++Y  +I+GLCK   + ++  +   
Sbjct: 219 VTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRR 278

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
            +  G+ P+  TY+S+I+G CR + L+EA RL   +  +G     + Y+TLI GLC  G+
Sbjct: 279 AVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGK 338

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEA+ L+E M   G   DV+TY+TLI G CK G++
Sbjct: 339 VDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRV 374



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 110/374 (29%), Positives = 181/374 (48%), Gaps = 19/374 (5%)

Query: 64  DIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
           D+ SFN          L +   +  ++ FF+ +      SP++++ +VL D L +A    
Sbjct: 78  DVISFNI-----LVTGLCRAGKIETALEFFRKMDDR--CSPNVITYSVLIDGLCKANRVS 130

Query: 124 VAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
            A++ L+S    G SP+  +  + +  LC+   +  A+    ++ + G   ++ T+NS L
Sbjct: 131 QAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLL 190

Query: 181 LGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  +  R      L  D+         +  G LI   C  G+V +   +L  +++ G  
Sbjct: 191 HGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGT 250

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+   +N LI+  C+         LL   V+    PD  TY  VI GLC+S +  EA R+
Sbjct: 251 PDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRL 310

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              +K RG  PD ++Y+T+I GLCK G + +A  ++  M   G   +  TY+++I G C+
Sbjct: 311 LLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCK 370

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              ++EA  L   M+  G   +T+TYN+LI GLC     DEA  L EEM +       +T
Sbjct: 371 AGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVT 430

Query: 412 YNTLIQGYCKEGKI 425
           YN LI G C+  ++
Sbjct: 431 YNILIHGMCRMERV 444



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 171/353 (48%), Gaps = 16/353 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFS 135
           L + N V  ++   + + +  G SPD+++  +L D L +    A A++V  + LD+ G  
Sbjct: 123 LCKANRVSQAVELLESMKAR-GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA-GCV 180

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    +  LC +  + +A      +   G   ++ T+ + + G  K+ R      +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             D+I+ G          LI   C   +V E   LLR+ +  G+ P+   ++ +I   C 
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 300

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    LL  + +R   PD   Y  +I+GLCK+ K  EA+ ++  +   G   D V 
Sbjct: 301 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVT 360

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T+I GLCK G + +A  +   M+  G  P+  TYNS+I G C +++L+EA  L +EM 
Sbjct: 361 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEME 420

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDE-AYHLFEEMAQKGIFRDVITYNTLIQG 418
                 + VTYN LI G+C   R D  A   F+EM   G+  D ITY+ L++G
Sbjct: 421 RSNCAPSAVTYNILIHGMCRMERVDSAALDYFQEMIDNGVIPDHITYSILLEG 473



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 151/301 (50%), Gaps = 9/301 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC++   + A   F  +K +    S+ T+N+ L G  +  + +  
Sbjct: 5   GCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERA 64

Query: 193 WKLY--------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
             L+        HD+I    L+   C  GK+    E  R+ ++D   P    ++ LI   
Sbjct: 65  MALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRK-MDDRCSPNVITYSVLIDGL 123

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+     +  ELL +M AR  +PD  TY  +++GLCK  K   A+ V  ++ + G VP+ 
Sbjct: 124 CKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 183

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V Y +++HGLC+   + DA  +  +M  +G  PN  TY ++I G C++  +++A  +  +
Sbjct: 184 VTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLAD 243

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M+DKG     + YN LI GLC   + DE+  L       GI  DV+TY+++I G C+  +
Sbjct: 244 MIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNR 303

Query: 425 I 425
           +
Sbjct: 304 L 304



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 157/354 (44%), Gaps = 31/354 (8%)

Query: 40  YTEIAKQVCKITRTKPRWE--QTLLSD--IPSF-NFNDPLFFREFLKQQNNVLLSIRFFQ 94
           YT +   +CK ++    WE  + +L    +P+   +N  L      ++ ++ L  +R   
Sbjct: 151 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 210

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVA----MDFLDSTGFSPNPNSLELYIQCLCE 150
                 G +P++V+   L D L +    K A     D +D  G +P+     + I  LC+
Sbjct: 211 C----RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLINGLCK 265

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIE 201
           +  ++E+     +    G+   + T++S + G  + +R D   +L           D+I 
Sbjct: 266 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVIL 325

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLH 258
              LI   C  GKV E ++L   +  DG   +   ++ LI   C+    GRV E   LL 
Sbjct: 326 YSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKA---GRVDEAHLLLA 382

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            MV     P   TY  +I GLC      EA  +  +++     P  V Y  +IHG+C+M 
Sbjct: 383 RMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 442

Query: 319 WLGDARKMWF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL-HKEMLDKGY 370
            +  A   +F EMI  G++P+  TY+ ++ G  +  +L E + L   +M+  GY
Sbjct: 443 RVDSAALDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGY 496



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 103/232 (44%), Gaps = 33/232 (14%)

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           + G  P    +N LI   C+     R  EL   M +   +P   TY  +++GL ++ K  
Sbjct: 3   DHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLE 62

Query: 287 EAYRVFNDLKER------------------GYV---------------PDTVMYTTVIHG 313
            A  +F ++ +R                  G +               P+ + Y+ +I G
Sbjct: 63  RAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLIDG 122

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK   +  A ++   M  +G  P+  TY  ++ G C+   +  A  + +EMLD G    
Sbjct: 123 LCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPN 182

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            VTYN+L+ GLC   R  +A  L  +M  +G   +V+TY TLI G CK G++
Sbjct: 183 LVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRV 234



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/164 (31%), Positives = 74/164 (45%), Gaps = 33/164 (20%)

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +++ G  P+ V Y ++I GLCK      A++++  M      P+  TYN+++ G  R   
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 355 LEEAKRLHKEMLDK------------------GYGETT---------------VTYNTLI 381
           LE A  L +EMLD+                  G  ET                +TY+ LI
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDRCSPNVITYSVLI 120

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GLC   R  +A  L E M  +G   DVITY  L+ G CKE K+
Sbjct: 121 DGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 164


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 175/336 (52%), Gaps = 16/336 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGL--IEEAF 158
           P +V  N L  SLV+ + +   +     +D +   PN  +L + I CLC S    +  AF
Sbjct: 67  PPVVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAF 126

Query: 159 CAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQA 208
            A  K+ ++G+  +  T+ + L G C K    D V KL+ ++ + G+         +I+ 
Sbjct: 127 SALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAV-KLFDEIGKMGFAPSLITYTTIIKG 185

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G  +   +LL+++ E G  P+  A+N +I   C+ +           MV +   P+
Sbjct: 186 LCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPN 245

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C   +  EA  +F  +  R  +P+TV +T ++ GLCK G + +AR+++ 
Sbjct: 246 VVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFE 305

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G+ P+ YTY++++ GYC    ++EA++L   M+ KG+  +   YN LI G C   
Sbjct: 306 MMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSR 365

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           R +EA  L  EM  + +  D +TY+TL+QG+C+ G+
Sbjct: 366 RLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGR 401



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 172/356 (48%), Gaps = 13/356 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSP 136
           L  +  ++ +++ F  +    GF+P L++   +   L +      A+  L   +  G  P
Sbjct: 151 LCSKAKIIDAVKLFDEI-GKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKP 209

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +    I  LC+     EA   FS++ + G+  ++ T++S L G   + + +    L+
Sbjct: 210 DVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLF 269

Query: 197 HDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
             +I             L+   C +G + E   +   + E+G+ P+   ++ L+  +C +
Sbjct: 270 KQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQ 329

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                  +L   MV +  AP    Y  +ING CKSR+  EA  + +++ +R   PDTV Y
Sbjct: 330 SQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTY 389

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           +T++ G C+ G    A+K++ EM   GLLP+  TY+ ++ G C+  +L+EA RL K M +
Sbjct: 390 STLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQE 449

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                    YN LI G+C  G+ + A  LF  +  KGI   V+TY  +I G  KEG
Sbjct: 450 SKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEG 505



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 164/352 (46%), Gaps = 23/352 (6%)

Query: 97  HSHYGFS-----------PDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLE 142
           H H+ FS           P  V+   L + L        A+   D  G   F+P+  +  
Sbjct: 121 HVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYT 180

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             I+ LC+ G    A     K++E G    +  +N+ +    K  R +     + ++++ 
Sbjct: 181 TIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQ 240

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          ++  FCN G+++E   L +Q++   ++P    F  L+   C++      
Sbjct: 241 GIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEA 300

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             +   M      PD +TY  +++G C   +  EA ++F+ +  +G+ P   +Y  +I+G
Sbjct: 301 RRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILING 360

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            CK   L +A+ +  EM  + L P+  TY++++ G+C+    + A++L KEM   G    
Sbjct: 361 HCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPD 420

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++TY+ L+ GLC HG  DEA+ L + M +  I   +  YN LIQG C  GK+
Sbjct: 421 SITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKL 472



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 154/363 (42%), Gaps = 47/363 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPN-------------------- 137
           G  PD+V+ N + DSL + R    AM F       G  PN                    
Sbjct: 206 GCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEA 265

Query: 138 -------------PNSLE--LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
                        PN++   + +  LC+ G+I EA   F  + E GV     T+++ + G
Sbjct: 266 TSLFKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDG 325

Query: 183 CIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                + D   KL+  ++  G+         LI   C   +++E   LL ++ +  L P+
Sbjct: 326 YCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDLTPD 385

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              ++ L+  FC+        +L   M +    PD+ TY  +++GLCK     EA+R+  
Sbjct: 386 TVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLK 445

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            ++E    P   +Y  +I G+C  G L  AR+++  +  KG+ P+  TY  MI G  +  
Sbjct: 446 AMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEG 505

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
              EA  + ++M+  G    + TYN  I G   +G    A  L EEM  +G   D  T+ 
Sbjct: 506 LSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQ 565

Query: 414 TLI 416
            L+
Sbjct: 566 MLL 568



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 123/264 (46%), Gaps = 37/264 (14%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           I +G     + N   V++      Q+L    +P    FNKL+    +KK++  V  L   
Sbjct: 35  ITNGGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSLVKKKHYSTVISLCKQ 94

Query: 260 MVARNRAPDNFT-------------------------------------YEEVINGLCKS 282
           M   N  P+ +T                                     +  ++NGLC  
Sbjct: 95  MDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSK 154

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            K ++A ++F+++ + G+ P  + YTT+I GLCK+G   +A ++  +M  KG  P+   Y
Sbjct: 155 AKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKGCKPDVVAY 214

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N++I   C+     EA     EM+D+G     VTY++++ G C  G+ +EA  LF++M  
Sbjct: 215 NTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIG 274

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
           + +  + +T+  L+ G CKEG I+
Sbjct: 275 RNVMPNTVTFTILVDGLCKEGMIL 298



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 76/175 (43%), Gaps = 10/175 (5%)

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRL----EAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           T    N +P + T      G C +   L    +A   FN L     +P  V++  ++  L
Sbjct: 24  TASTTNISPSSITN----GGFCSNYNNLHSVADAVASFNQLLGIRPLPPVVVFNKLLGSL 79

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI--DNLEEAKRLHKEMLDKGYGE 372
            K         +  +M    + PN YT   +I+  C    D++  A     +M   G   
Sbjct: 80  VKKKHYSTVISLCKQMDLSNIRPNVYTLTILINCLCHSNRDHVHFAFSALGKMFKLGLQP 139

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           T VT+ TL+ GLC   +  +A  LF+E+ + G    +ITY T+I+G CK G   N
Sbjct: 140 THVTFGTLLNGLCSKAKIIDAVKLFDEIGKMGFAPSLITYTTIIKGLCKIGHTTN 194


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 174/334 (52%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSL-VEARAFK--VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDLV+ + L + L ++ R  +  V +D +   GF P+  +    +  LC+SG    A   
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F K++E  +  S+  ++  +    K    D    L++         D++    LI   CN
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGK  +G ++LR+++   ++P+   F+ LI  F ++       EL + M+ R  APD  T
Sbjct: 293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK     EA ++F+ +  +G  PD V Y+ +I+  CK   + D  +++ E+ 
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL+PN  TYN+++ G+C+   L  AK L +EM+ +G   + VTY  L+ GLC +G  +
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  +FE+M +  +   +  YN +I G C   K+
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 172/368 (46%), Gaps = 47/368 (12%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
            YGF PD V+   + + L ++    +A+D    ++      +     + I  LC+ G  +
Sbjct: 203 EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFD 262

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGC---------IKIDRTDLVWKLYHDLIESGYLI 206
           +A   F++++  G+   + T++S + G           K+ R  +   +  D++    LI
Sbjct: 263 DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALI 322

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             F  +GK+ E  EL  +++  G+ P+   +N LI  FC++      +++   MV++   
Sbjct: 323 DVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCE 382

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +IN  CK+++  +  R+F ++  +G +P+T+ Y T++ G C+ G L  A+++
Sbjct: 383 PDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKEL 442

Query: 327 WFEMIHKGLLPNEYTY-----------------------------------NSMIHGYCR 351
           + EM+ +G+ P+  TY                                   N +IHG C 
Sbjct: 443 FQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCN 502

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +++A  L   + DKG     VTYN +I GLC  G   EA  LF +M + G   D  T
Sbjct: 503 ASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFT 562

Query: 412 YNTLIQGY 419
           YN LI+ +
Sbjct: 563 YNILIRAH 570



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 86/235 (36%), Positives = 123/235 (52%), Gaps = 8/235 (3%)

Query: 193 WKLYH--DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           WKL +  D I    L+  FC +G+VSE   L+ +++E    P+    + LI+  C K   
Sbjct: 132 WKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLK--- 188

Query: 251 GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           GRVSE   L+  MV     PD  TY  V+N LCKS     A  +F  ++ER      V Y
Sbjct: 189 GRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQY 248

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           + VI  LCK G   DA  ++ EM  KG+  +  TY+S+I G C     ++  ++ +EM+ 
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +      VT++ LI      G+  EA  L+ EM  +GI  D ITYN+LI G+CKE
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKE 363



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 6/233 (2%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE- 255
           HD+     +I  +C   K+   + +L +  + G  P+   F+ L++ FC +   GRVSE 
Sbjct: 103 HDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE---GRVSEA 159

Query: 256 --LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L+  MV   + PD  T   +INGLC   +  EA  + + + E G+ PD V Y  V++ 
Sbjct: 160 VALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNR 219

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G    A  ++ +M  + +  +   Y+ +I   C+  + ++A  L  EM  KG    
Sbjct: 220 LCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKAD 279

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            VTY++LI GLC  G+ D+   +  EM  + I  DV+T++ LI  + KEGK++
Sbjct: 280 VVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLL 332



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 110/248 (44%), Gaps = 35/248 (14%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D KV++  +L   +++   +P    FN+L S     K +  V      M       D +T
Sbjct: 48  DIKVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYT 107

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY------------------------ 307
              +IN  C+ +K L A+ V     + GY PDT+ +                        
Sbjct: 108 MTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMV 167

Query: 308 -----------TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                      +T+I+GLC  G + +A  +   M+  G  P+E TY  +++  C+  N  
Sbjct: 168 EMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSA 227

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A  L ++M ++    + V Y+ +I  LC  G  D+A  LF EM  KGI  DV+TY++LI
Sbjct: 228 LALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLI 287

Query: 417 QGYCKEGK 424
            G C +GK
Sbjct: 288 GGLCNDGK 295



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 29/284 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD ++ N L D   +      A    D + S G  P+  +  + I   C++  +++ 
Sbjct: 345 GIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDG 404

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F ++   G+  +  T+N+ +LG                          FC  GK++ 
Sbjct: 405 MRLFREISSKGLIPNTITYNTLVLG--------------------------FCQSGKLNA 438

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             EL ++++  G+ P    +  L+   C+     +  E+   M           Y  +I+
Sbjct: 439 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIH 498

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G+C + K  +A+ +F  L ++G  PD V Y  +I GLCK G L +A  ++ +M   G  P
Sbjct: 499 GMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTP 558

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +++TYN +I  +     L  +  L +EM   G+   + T   +I
Sbjct: 559 DDFTYNILIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVI 602


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/380 (30%), Positives = 188/380 (49%), Gaps = 28/380 (7%)

Query: 74  LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL-----------VEARAF 122
           L  R     +N  ++++RFF+W     GF    +S +V+ D L           V  +  
Sbjct: 49  LLVRVLNTVRNRPVVALRFFRWAERQTGFKRSEISYSVILDILARNGLMRSAYCVMEKVV 108

Query: 123 KVAM-----DFLDSTGFS-PNPN-SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
            V M     D + S+  S P+    L+L +    +  L+E+    F K+   G+   +K 
Sbjct: 109 SVKMENGVIDVVSSSEVSMPSVKLILDLLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKN 168

Query: 176 WNSAL-LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
            N  L L   + +  D+  ++Y+ ++E G          ++ +FC  G V E  +LL Q+
Sbjct: 169 CNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQM 228

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
              G  P +  +N L++         +  EL+  M+        +TY+ +I G C+  + 
Sbjct: 229 QAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQI 288

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            EA R+  ++  RG VP  V Y T+++GLCK G + DARK+   M++K L+P+  +YN++
Sbjct: 289 EEASRLGEEMLSRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTL 348

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I+GY R+ N+ EA  L  E+  +    + VTYNTLI GLC  G  D A  L +EM + G 
Sbjct: 349 IYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGP 408

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             DV T+ T ++G+CK G +
Sbjct: 409 DPDVFTFTTFVRGFCKMGNL 428



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 162/341 (47%), Gaps = 19/341 (5%)

Query: 101 GFSPDLVSCN----VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+ +CN    +L D        +   + +   G  P   +    +   C+ G+++E
Sbjct: 161 GLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQE 220

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A     +++ MG   +  T+N  + G       +   +L  D++  G          LI+
Sbjct: 221 ALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIR 280

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARN 264
            +C  G++ E   L  ++L  G VP    +N ++   C+   +GRVS+   LL  MV +N
Sbjct: 281 GYCEKGQIEEASRLGEEMLSRGAVPTVVTYNTIMYGLCK---WGRVSDARKLLDVMVNKN 337

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  +Y  +I G  +     EA+ +F +L+ R   P  V Y T+I GLC++G L  A 
Sbjct: 338 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAM 397

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EMI  G  P+ +T+ + + G+C++ NL  AK L  EML++G       Y T I G 
Sbjct: 398 RLKDEMIKHGPDPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGE 457

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G   +A+ + EEM  +G   D+ITYN  I G  K G +
Sbjct: 458 LKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNL 498



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 156/338 (46%), Gaps = 18/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N +   L +      A   LD   +    P+  S    I      G I EA
Sbjct: 302 GAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEA 361

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           F  F++L+   +  S+ T+N+ + G  ++   D+  +L  ++I+ G           ++ 
Sbjct: 362 FLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTFVRG 421

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
           FC  G +    EL  ++L  GL P+  A+   I+R   +   G  S+   +   M+AR  
Sbjct: 422 FCKMGNLPMAKELFDEMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQEEMLARGF 478

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY   I+GL K     EA  +   +   G VPD V YT++IH     G L  AR 
Sbjct: 479 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 538

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG+ P+  TY  +IH Y     L+ A     EM +KG     +TYN LI GLC
Sbjct: 539 LFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLC 598

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              + D+AY+ F EM  KGI  +  TY  LI   C  G
Sbjct: 599 KVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLG 636


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 169/332 (50%), Gaps = 12/332 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           ++++  ++ D L +A     A  +   +   G  PN  +  + I   C+   +  A+   
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCND 212
            ++KE G+  ++ T+++ + G  +  + D  +KL+  ++E+G          L+   C +
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRN 125

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G + E YELL ++ E GL P+  +++ L++  C+        ++       +  PD   Y
Sbjct: 126 GLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAY 185

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I GLCK+ +  EA ++F  ++E    PD V +T ++ GLCK   L +A+++   M  
Sbjct: 186 STLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMED 245

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +   PN  TY+S+I G C+   + +A+ + K M+ +G     VTYN+LI G C+    D 
Sbjct: 246 RNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDS 305

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           A  L EEM   G   D+ITYNTLI G CK G+
Sbjct: 306 ALLLMEEMTATGCLPDIITYNTLIDGLCKTGR 337



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+ + +            A      +   G  PN  +    +  LC +GL++EA
Sbjct: 72  GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEA 131

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------LIESGYLIQA 208
           +    +++E G+     ++++ + G  K  + D+  K++ D         ++    LI  
Sbjct: 132 YELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAG 191

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E  +L  ++ E+   P+   F  L+   C+        ++L TM  RN  P+
Sbjct: 192 LCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPN 251

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+ +  +A  VF  +  RG  P+ V Y ++IHG C    +  A  +  
Sbjct: 252 VITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLME 311

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G LP+  TYN++I G C+     EA RL  +M  K      +TY+ LI G C   
Sbjct: 312 EMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLE 371

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R D A  LF++M ++ +  DV+T++TL++GYC  G +
Sbjct: 372 RIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLV 408



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 166/336 (49%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  PD  S + L   L +     +A+   +       P  +  Y   I  LC++G ++EA
Sbjct: 142 GLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEA 201

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F K++E      + T+ + + G  K DR     ++           ++I    LI  
Sbjct: 202 CKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDG 261

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V +  E+ ++++  G+ P    +N LI  FC          L+  M A    PD
Sbjct: 262 LCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPD 321

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+ +  EA R+F D+K +   PD + Y+ +I G CK+  +  AR ++ 
Sbjct: 322 IITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFD 381

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ + +LP+  T+++++ GYC    +++A+RL +EM+         TY +L+ G C  G
Sbjct: 382 DMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVG 441

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           R  EA  + + MA++G   +V+TY  LI  +C+ GK
Sbjct: 442 RMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGK 477



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 151/332 (45%), Gaps = 13/332 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++++ + L D L +    + A +        G  PN  +    I   C +  ++ A  
Sbjct: 249 TPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALL 308

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFC 210
              ++   G    I T+N+ + G  K  R     +L+ D+         I    LI  FC
Sbjct: 309 LMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFC 368

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              ++     L   +L+  ++P+   F+ L+  +C          LL  MVA + +PD +
Sbjct: 369 KLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVY 428

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +++G CK  + +EA RV   + +RG  P+ V YT +I   C+ G    A K+  EM
Sbjct: 429 TYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEM 488

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM-LDKGYGETTVTYNTLIAGLCLHGR 389
           +  G+ PN  TY S+I G+C   +LEEA+++ + +  D+        Y  ++ GLC  GR
Sbjct: 489 VGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGR 548

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              A  L E + Q G       Y  LI+G C+
Sbjct: 549 MSAALELLEAIKQSGTPPRHDIYVALIRGLCQ 580



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 121/221 (54%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C   ++ E      ++ + G VP    +N LI+ FC+     R   LL  M    
Sbjct: 13  MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESG 72

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP+  TY  VI+G C+  K   AY++F  + E G +P+ V Y T++ GLC+ G + +A 
Sbjct: 73  LAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGLMDEAY 132

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM  +GL P++++Y++++ G C+   ++ A ++ ++  +       V Y+TLIAGL
Sbjct: 133 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGL 192

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR DEA  LFE+M +     DV+T+  L+ G CK  ++
Sbjct: 193 CKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRL 233



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/156 (41%), Positives = 99/156 (63%)

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            T+  +I+GLCK+ +  EA   F  +K++G VP+   Y  +I+G CK+  +  A  +  E
Sbjct: 8   ITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKE 67

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   GL PN  TY+++IHG+CR   ++ A +L ++M++ G     VTYNTL++GLC +G 
Sbjct: 68  MKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNGL 127

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEAY L +EM ++G+  D  +Y+TL+ G CK GKI
Sbjct: 128 MDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKI 163



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 145/338 (42%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L            A   M+ + +TG  P+  +    I  LC++G   EA
Sbjct: 282 GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEA 341

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F  +K       + T++  + G  K++R D+   L+ D+++   L         ++ 
Sbjct: 342 NRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 401

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN G V +   LL +++     P+   +  L+  FC+         +L  M  R   P+
Sbjct: 402 YCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 461

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C++ K   AY++  ++   G  P+ + Y ++I G C  G L +ARKM  
Sbjct: 462 VVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLE 521

Query: 329 EMIH-KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +   +    + + Y  M+ G CR   +  A  L + +   G       Y  LI GLC  
Sbjct: 522 RLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQG 581

Query: 388 GRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGK 424
               +A  + EEM      R +   Y  +IQ   +EG+
Sbjct: 582 KELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGR 619



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 126/290 (43%), Gaps = 15/290 (5%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R F  + + +  +PD+++ + L     +     +A    D        P+  +    ++ 
Sbjct: 343 RLFGDMKAKF-CNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEG 401

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
            C +GL+++A     ++        + T+ S + G  K+ R     ++   + + G    
Sbjct: 402 YCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPN 461

Query: 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI AFC  GK +  Y+LL +++ +G+ P    +  LI  FC   +     ++L 
Sbjct: 462 VVTYTALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLE 521

Query: 259 TMVA-RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            +    N   D F Y  +++GLC++ +   A  +   +K+ G  P   +Y  +I GLC+ 
Sbjct: 522 RLERDENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQG 581

Query: 318 GWLGDARKMWFEM-IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
             LG A ++  EM + +   PN   Y ++I    R    EEA  L  E+L
Sbjct: 582 KELGKAMEVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANALADELL 631



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 49/88 (55%)

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  T+  MI G C+ + L EA     +M  KG      TYN LI G C   +   AY L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EM + G+  +V+TY+T+I G+C++ K+
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKV 93


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 175/337 (51%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P + +  ++ + L +     A  V M  +      P   S  + I  LC++ L+ EA
Sbjct: 204 GYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEA 263

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---------IDRTDLVWKLYHDLIESGYLIQA 208
              F  ++ +G+  ++ T+NS + G            + +  L W +  D++    L+ A
Sbjct: 264 VDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDA 323

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V E   +  ++++  + P+   ++ LI   C+   +   S LL+ M++RN  PD
Sbjct: 324 LCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPD 383

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+   ++  CK     EA  + N + ERG  P+ V Y +++ G C    + +ARK++ 
Sbjct: 384 VVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFD 443

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M++KG  P+  +YN +I GYC+ + ++EAK+L  EM  KG    ++T+ TLI+GLC  G
Sbjct: 444 IMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAG 503

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R   A  LF++M   G   D+ITY+TL+ G+CK G +
Sbjct: 504 RPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHL 540



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++VS +++ DSL + R    A+D    + S G SP   +    I  +C SG  ++A   
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 161 FSKLKEMGVFGSIKTWN---------SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
           F ++ E  +   + T++           +L  + +    +   +  D++    LI   C 
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCK 361

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
                E   LL ++L   + P+   F+  +  FC+K        +++ M+ R   P+  T
Sbjct: 362 SSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVT 421

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++G C   +  EA +VF+ +  +G  PD + Y  +I G CK   + +A++++ EM 
Sbjct: 422 YNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMS 481

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           HKGL PN  T+ ++I G C+      AK L K+M   G     +TY+TL++G C HG  D
Sbjct: 482 HKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLD 541

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  LFE + +  +  + +    L+ G CK GK+
Sbjct: 542 EALALFEALKKSQLKPNHVICKILLGGMCKAGKL 575



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/325 (25%), Positives = 156/325 (48%), Gaps = 20/325 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP +V+ N L   +  +  +K A             P+  +  + +  LC+ G++ EA
Sbjct: 274 GISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEA 333

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-------------LYHDLIESGY 204
              F K+ ++ +   I T++S + G  K      +WK             +  D++    
Sbjct: 334 LSVFGKMIQIAMEPDIVTYSSLIHGVCKSS----LWKESSTLLNEMLSRNIRPDVVTFSI 389

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            +  FC  G VSE   ++  ++E GL P    +N L+  +C         ++   MV + 
Sbjct: 390 WVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKG 449

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            APD  +Y  +I G CKS +  EA ++F+++  +G  P+++ +TT+I GLC+ G    A+
Sbjct: 450 CAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAK 509

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ +M   G  P+  TY++++ G+C+  +L+EA  L + +         V    L+ G+
Sbjct: 510 ELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKILLGGM 569

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDV 409
           C  G+ ++A  LF  ++ + +  DV
Sbjct: 570 CKAGKLEDAKELFSSLSIEELQPDV 594



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 131/277 (47%), Gaps = 9/277 (3%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++A   F+++  M  F  I  +N  L   +++   D V  +Y  +   G          L
Sbjct: 86  DDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTIL 145

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C+   V  G+ +L ++ + G  P    FN LI+  C +       E L  +++R  
Sbjct: 146 INCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGY 205

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P  +T+  ++NGLCK  K   A      + E    P+ V Y+ +I  LCK   + +A  
Sbjct: 206 QPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVD 265

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +++ M   G+ P   TYNS+I+G C     ++A  L KEML+       VT++ L+  LC
Sbjct: 266 LFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALC 325

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             G   EA  +F +M Q  +  D++TY++LI G CK 
Sbjct: 326 KEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKS 362



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/330 (23%), Positives = 143/330 (43%), Gaps = 29/330 (8%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P +   N L  +LV  + +   +     ++  G S +  +L + I CLC   L+ 
Sbjct: 97  HMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVG 156

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
             F    K+ ++G   SI T+N+                          LI   C +G++
Sbjct: 157 LGFSVLGKIFKLGFKPSIITFNT--------------------------LINGLCIEGRI 190

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  E L  ++  G  P       +++  C+          +  MV  +  P+  +Y  +
Sbjct: 191 VEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSII 250

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ LCK+R   EA  +F  ++  G  P  V Y ++I+G+C  G    A  ++ EM+   +
Sbjct: 251 IDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASILFKEMLEWNM 310

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P+  T++ ++   C+   + EA  +  +M+        VTY++LI G+C      E+  
Sbjct: 311 KPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESST 370

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L  EM  + I  DV+T++  +  +CK+G +
Sbjct: 371 LLNEMLSRNIRPDVVTFSIWVDVFCKKGMV 400



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 81/179 (45%), Gaps = 1/179 (0%)

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           NF       + MV  N  P    + +++  L + +       ++  ++  G        T
Sbjct: 84  NFDDALAYFNQMVHMNPFPCITQFNQLLAALVRMKHYDSVVSIYRKMEFFGVSCSVYTLT 143

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            +I+ LC +  +G    +  ++   G  P+  T+N++I+G C    + EA      ++ +
Sbjct: 144 ILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIVEAMEQLDYIMSR 203

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           GY  T  T+  ++ GLC  G+T  A    ++M +     +V++Y+ +I   CK  ++VN
Sbjct: 204 GYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYSIIIDSLCKN-RLVN 261


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 209/476 (43%), Gaps = 79/476 (16%)

Query: 15  NPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPL 74
           NP + ++PN         T  S    TE  K +  + + K    + LL     F  +  +
Sbjct: 54  NPSSVEDPNQS-------TSLSDSFLTE--KVLLNLKQGKLNSLRNLL-----FRLDSVV 99

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHY-GFSPDLVSCNVLFDSLVEAR----AFKVAMDFL 129
                 K + N+ L  RF   + S+   F   L S + +   LV +R    A  V +  +
Sbjct: 100 VVDVLYKCRENLQLGQRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMV 159

Query: 130 DSTGFS----------------PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
             +G S                 NP   +L ++   ++  + E   AF  LK  G+  SI
Sbjct: 160 RKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSI 219

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
              NS L G +K+   DL W++Y +++ SG          +I A C + K+      L  
Sbjct: 220 NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSD 279

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + E G+ P+   +N LI+ +C +       EL+ +M  +   P  FTY  +INGLCK+ K
Sbjct: 280 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 339

Query: 285 RL-----------------------------------EAYRVFNDLKERGYVPDTVMYTT 309
            L                                   +A R+F+++  +G VPD V ++ 
Sbjct: 340 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSA 399

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I  L K G L  A K + +M + GL P+   Y  +I G+CR   + EA ++  EML++G
Sbjct: 400 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 459

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                VTYNT++ GLC      EA  LF EM ++G+F D  T+ TLI GY K+G +
Sbjct: 460 CVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNM 515



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 166/338 (49%), Gaps = 14/338 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G  P + + N + + L +   +  A   LD     G SP+  +  + +   C +  +
Sbjct: 316 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 375

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESGY--------- 204
            +A   F ++   GV   + ++ SAL+G + K    D   K + D+  +G          
Sbjct: 376 MDAERIFDEMPSQGVVPDLVSF-SALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTI 434

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC +G +SE  ++  ++LE G V +   +N +++  C++K      EL   M  R 
Sbjct: 435 LIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 494

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD +T+  +ING  K     +A  +F  + +R   PD V Y T+I G CK   +    
Sbjct: 495 VFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN 554

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++W +MI + + PN  +Y  +I+GYC +  + EA RL  EM++KG+  T +T NT++ G 
Sbjct: 555 ELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 614

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           C  G   +A      M  KGI  D ITYNTLI G+ KE
Sbjct: 615 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 652



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 163/347 (46%), Gaps = 30/347 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           + +N++ + R F  + S  G  PDLVS + L   L +      A+ +   + + G +P+ 
Sbjct: 371 RNDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN 429

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
               + I   C +G++ EA     ++ E G    + T+N+ L G                
Sbjct: 430 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNG---------------- 473

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                      C +  +SE  EL  ++ E G+ P+   F  LI+ + +  N  +   L  
Sbjct: 474 ----------LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 523

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ RN  PD  TY  +I+G CK  +  +   ++ND+  R   P+ + Y  +I+G C MG
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 583

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +A ++W EM+ KG      T N+++ GYCR  N  +A      ML KG     +TYN
Sbjct: 584 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 643

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G       D A+ L  +M   G+  DVITYN ++ G+ ++G++
Sbjct: 644 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRM 690



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L ++       + A + +DS    G  P   +    I  LC++G    A
Sbjct: 284 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 343

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ ++G+     T+N  L+ C + D      +++          DL+    LI  
Sbjct: 344 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 403

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G + +  +  R +   GL P+N  +  LI  FC         ++   M+ +    D
Sbjct: 404 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLD 463

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCK +   EA  +F ++ ERG  PD   +TT+I+G  K G +  A  ++ 
Sbjct: 464 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 523

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI + L P+  TYN++I G+C+   +E+   L  +M+ +      ++Y  LI G C  G
Sbjct: 524 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 583

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              EA+ L++EM +KG    +IT NT+++GYC+ G  V
Sbjct: 584 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 621



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 12/278 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ N + + L + +    A +    +   G  P+  +    I    + G + +A   F
Sbjct: 463 DVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLF 522

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCND 212
             + +  +   + T+N+ + G  K    + V +L++D+I           G LI  +CN 
Sbjct: 523 EMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNM 582

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G VSE + L  +++E G        N ++  +C   N  +  E L  M+ +   PD  TY
Sbjct: 583 GCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITY 642

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +ING  K      A+ + N ++  G +PD + Y  +++G  + G + +A  +  +MI 
Sbjct: 643 NTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIMLKMIE 702

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +G+ P+  TY S+I+G+   +NL+EA R+H EML +G+
Sbjct: 703 RGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 740



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 29/241 (12%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+V+ N L D   +    +   +    + S    PN  S  + I   C  G + EAF
Sbjct: 530 LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAF 589

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             + ++ E G   +I T N+                          +++ +C  G   + 
Sbjct: 590 RLWDEMVEKGFEATIITCNT--------------------------IVKGYCRAGNAVKA 623

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            E L  +L  G+VP+   +N LI+ F +++N  R   L++ M      PD  TY  ++NG
Sbjct: 624 DEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 683

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             +  +  EA  +   + ERG  PD   YT++I+G      L +A ++  EM+ +G +P+
Sbjct: 684 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743

Query: 339 E 339
           +
Sbjct: 744 D 744



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 71/140 (50%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+ ++ ++   G   +      +I+ LCK   + + +    +M  KG+ P+  TYN++I+
Sbjct: 238 AWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLIN 297

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            YCR   LEEA  L   M  KG      TYN +I GLC  G+   A  + +EM + G+  
Sbjct: 298 AYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSP 357

Query: 408 DVITYNTLIQGYCKEGKIVN 427
           D  TYN L+   C+   +++
Sbjct: 358 DTATYNILLVECCRNDNMMD 377



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 17/138 (12%)

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-----------------NEYTYNSMIHGY 349
           ++ +IH L +   L DA+ +   M+ K  +                  N   ++ ++  Y
Sbjct: 135 FSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTY 194

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            +   L E     + +  KG   +    N+L+ GL   G  D A+ +++E+ + G+  +V
Sbjct: 195 VQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNV 254

Query: 410 ITYNTLIQGYCKEGKIVN 427
            T N +I   CK  KI N
Sbjct: 255 YTLNIMINALCKNQKIEN 272


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/341 (31%), Positives = 169/341 (49%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSL-VEARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+ N L   L VE R  +    F  +  T   PN  +    +  LC  G I
Sbjct: 141 TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH------DLIESGY 204
            EA     ++ E G+  +  T+ + + G  KI  T    DL+ K+        +++    
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSA 260

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I + C DG+ S+   L  ++ E G+ P+   +N +I  FC    +    +LL  M+ R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  +IN   K  K  EA  +++++  RG +P+T+ Y+++I G CK   L  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M++ M  KG  PN  T+N++I GYC    +++   L  EM + G    T TYNTLI G 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L G  + A  L +EM   G+  D++T +TL+ G C  GK+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 152/296 (51%), Gaps = 10/296 (3%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F K+ ++G+   + T+N+ L G    DR      L+H +
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 200 IES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            E+           L+   C +G++ E   LL +++EDGL P    +  ++   C+  + 
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDT 235

Query: 251 GRVSELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               +LL  M   +   P+   Y  +I+ LCK  +  +A  +F +++E+G  PD   Y +
Sbjct: 236 VSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C  G   DA ++  EM+ + + P+  TYN++I+ + +     EA+ L+ EML +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+TY+++I G C   R D A H+F  MA KG   ++IT+NTLI GYC   +I
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 165/353 (46%), Gaps = 33/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL + N +      +  +  A   L        SP+  +    I    + G   EA
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              + ++   G+  +  T++S + G  K +R D    +++         +LI    LI  
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++ E GLV + T +N LI  F    +     +LL  M++    PD
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 269 NFTYEEVINGLC----------------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             T + +++GLC                KS+K L+A   FN     G  PD   Y  +I 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN-----GVEPDVQTYNILIS 519

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL   G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +  
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 579

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+ TLI G C  GR D+   LF EM ++GI  + ITY TLI G+ K G I
Sbjct: 580 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 23/340 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G   ++ T+N+ + G     R D   +L H++ E+G          LI  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
              G ++   +LL++++  GL P+    + L+   C+        E+   M    +    
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I+GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+ ++I+GYC+   +++   L  EM  +G     +TY 
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           TLI G    G  + A  +F+EM   G++ D IT   ++ G
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 145/317 (45%), Gaps = 45/317 (14%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +E+A   FS +       S+  +   +   ++++R DLV  LY          D+     
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+ FC+  K+        ++ + GL P+   FN L+   C +        L H M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  ++NGLC+  + +EA  + + + E G  P  + Y T++ G+CK+G      
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 321 --------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                            DA+ ++ EM  KG+ P+ +TYNSMI G
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C      +A++L +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 409 VITYNTLIQGYCKEGKI 425
            ITY+++I G+CK+ ++
Sbjct: 360 TITYSSMIDGFCKQNRL 376



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA--MDFLDST-GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ + + D   +      A  M +L +T G SPN  +    I   C +  I++ 
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ E G+     T+N+ + G   +   +    L  ++I SG          L+  
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F+ +  + + P+ V +TT+I+G CK 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ N  TY ++I G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 595 GRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
             ++ GL        A  + E++
Sbjct: 655 RNMLTGLWSKEELKRAVAMLEKL 677



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 86/189 (45%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 49  KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +T +I   C    L  A   + ++   GL P+  T+N+++HG C  D + EA
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEA 168

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  +M +       VT+ TL+ GLC  GR  EA  L + M + G+    ITY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 419 YCKEGKIVN 427
            CK G  V+
Sbjct: 229 MCKIGDTVS 237



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIE 155
           H G  PD ++ + + D L +      A    DS G   FSPN  +    I   C++G ++
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
           +    F ++   G+  +  T+ + + G  K+   +    ++ ++I SG
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/327 (33%), Positives = 170/327 (51%), Gaps = 31/327 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL-DSTGFSPNPNSLE--LYIQCLCESGLIEEAFCA 160
           PD+VS N + + L + +  + A+D L +  G S  PNS    + +  LC+ G +EEA   
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             ++K  G                          L  D++    LI  FC+ G +  G  
Sbjct: 68  LGEMKRKG--------------------------LEVDVVVYSTLISGFCSKGCLDRGKA 101

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L  ++LE G+ P    ++ LI+ FC+K  +   + +LHTM  R   PD +TY  +I GLC
Sbjct: 102 LFDEMLEKGISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLC 161

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  +  +A  +F+ + E+G  P TV Y  +I+GLCK G +GDA K++  M+ KG      
Sbjct: 162 KDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVV 221

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTV-TYNTLIAGLCLHGRTDEAYHLFE 398
           +YN++I G C    L+EA +L   +L+ G Y E  V T+NT+I GLC  GR D+A  +++
Sbjct: 222 SYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYD 281

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            M ++G F ++ T + LI  Y K G I
Sbjct: 282 TMIERGSFGNLFTCHILIGEYIKSGII 308



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 142/273 (52%), Gaps = 11/273 (4%)

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
           +K + +   I ++N+ + G  K  R +    L  ++  S           L+   C +G+
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGR 60

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V E   LL ++   GL  +   ++ LIS FC K    R   L   M+ +  +P+   Y  
Sbjct: 61  VEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSC 120

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +ING CK     EA  V + + ERG  PD   YT +I GLCK G    A  ++  M  KG
Sbjct: 121 LINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKG 180

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             P+  TYN +I+G C+   + +A ++ + ML+KG     V+YNTLI GLC +G+ DEA 
Sbjct: 181 EEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAM 240

Query: 395 HLFEEMAQKG--IFRDVITYNTLIQGYCKEGKI 425
            LF  + + G  +  DVIT+NT+IQG CKEG++
Sbjct: 241 KLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRL 273



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 160/344 (46%), Gaps = 16/344 (4%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           L +  G  P  V+ NVL + L +      AFK+    L+  G      S    I  LC +
Sbjct: 175 LMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEK-GKRLEVVSYNTLIMGLCNN 233

Query: 152 GLIEEAFCAFSKLKEMG--VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           G ++EA   FS L E G  V   + T+N+ + G  K  R D   ++Y  +IE G      
Sbjct: 234 GKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLF 293

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI  +   G + +  EL ++V + GLVP +T ++ +I  FC+         L   M
Sbjct: 294 TCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRM 353

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
                +P  F Y  ++  LCK     +A R+F ++KE    PDT+ +  +I G  K G +
Sbjct: 354 KISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDI 413

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A+++  +M   GL P+ YTY+S I+   ++  +EEAK     M+  G       Y++L
Sbjct: 414 HSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSL 473

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           I G  L+   +E  +L  +MA  G+  D+   N+++   C   +
Sbjct: 474 IKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAE 517



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 14/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V  + L +   +   ++ A   L +    G  P+  +    I  LC+ G   +A
Sbjct: 110 GISPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKA 169

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F  + E G   S  T+N  + G  K       +K++  ++E G          LI  
Sbjct: 170 LDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMG 229

Query: 209 FCNDGKVSEGYELLRQVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            CN+GK+ E  +L   +LEDG  + P+   FN +I   C++    +  E+  TM+ R   
Sbjct: 230 LCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSF 289

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            + FT   +I    KS    +A  ++  + + G VP +  Y+ +I G CKM  L  A+ +
Sbjct: 290 GNLFTCHILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGL 349

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M   GL P  + YN+++   C+  +LE+A+RL +EM +      T+++N +I G   
Sbjct: 350 FSRMKISGLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLK 409

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G    A  L  +M Q G+  D  TY++ I    K G++
Sbjct: 410 AGDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQM 448



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 118/283 (41%), Gaps = 17/283 (6%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F   L       PD+++ N +   L +      A++  D+    G   N  +  + I   
Sbjct: 243 FSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEY 302

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
            +SG+I++A   + ++ ++G+  S  T++  + G  K+   +    L+  +  SG     
Sbjct: 303 IKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTL 362

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+ + C +  + +   L +++ E    P+  +FN +I    +  +     ELL+ 
Sbjct: 363 FDYNTLMASLCKESSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLND 422

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M      PD +TY   IN L K  +  EA   F+ +   G  PD  +Y ++I G      
Sbjct: 423 MQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDE 482

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + +   +  +M   G++ +    NS++   C       A+ LH
Sbjct: 483 IEEVINLLRQMADMGVILDLEITNSILTFLCN-----SAEHLH 520



 Score = 41.6 bits (96), Expect = 0.85,   Method: Compositional matrix adjust.
 Identities = 40/200 (20%), Positives = 81/200 (40%), Gaps = 30/200 (15%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R FQ +       PD +S N++ D  ++A     A + L+     G +P+  +   +I  
Sbjct: 383 RLFQEMKES-NCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTYSSFINR 441

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           L + G +EEA  AF  +   G+      ++S                          LI+
Sbjct: 442 LSKLGQMEEAKGAFDSMIASGITPDNHVYDS--------------------------LIK 475

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F  + ++ E   LLRQ+ + G++ +    N +++  C       V ELL    + +   
Sbjct: 476 GFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSSESSGG 535

Query: 268 DNFTYEEVINGLCKSRKRLE 287
            + + ++++  + K   +L+
Sbjct: 536 TSISCDKLLMKIQKFNPKLQ 555


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 152/306 (49%), Gaps = 14/306 (4%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L+S+ F+PN     + I    E GL+EEA   + K   M V  +++  N  L G +K  R
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYK---MDVLPAMQACNMVLDGLVKKGR 173

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D +WK+Y D++  G          LI   C  G   + + L  +++E  + P    +  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C +        +  TM      P+ +TY  +++G CK     +A  ++ ++   G
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG 293

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            +P+ V +  +I GLCK   +  ARK   +M   G++PN + YN +I GYC+  NL EA 
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            LH E+          TY+ LI GLC   R +EA  L +EM +KG   + +TYNTLI GY
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 420 CKEGKI 425
           CKEG +
Sbjct: 414 CKEGNM 419



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 167/342 (48%), Gaps = 14/342 (4%)

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           W++      P + +CN++ D LV+   F    KV  D + + G SPN  +    I   C 
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMV-ARGASPNVVTYGTLIDGCCR 205

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----- 205
            G   +AF  F ++ E  +F ++  +   + G     R      ++  +  SG L     
Sbjct: 206 QGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 206 ----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
               +  +C    V +  EL +++L DGL+P    F  LI   C+        + L  M 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +    P+ F Y  +I+G CK+    EA  + +++++   +PD   Y+ +I GLC +  + 
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +  EM  KG LPN  TYN++I GYC+  N+E+A  +  +M +KG     +T++TLI
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G C  G+ + A  L+ EM  KG+  DV+ Y  LI G+ K+G
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP++V+   L D         +AF++  + ++   F P      + I+ LC    I E
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF-PTVVIYTILIRGLCGESRISE 246

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F  ++  G+  ++ T+N+ + G  KI       +LY +++  G L         I 
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILID 306

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   ++    + L  +   G+VP    +N LI  +C+  N      L   +      P
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP 366

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FTY  +I GLC   +  EA  +  ++K++G++P+ V Y T+I G CK G +  A ++ 
Sbjct: 367 DVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVC 426

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M  KG+ PN  T++++I GYC+   +E A  L+ EM+ KG     V Y  LI G    
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKD 486

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T EA+ L +EM + G+  +V T + LI G CK+G+I
Sbjct: 487 GNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRI 524



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 3/192 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F  LI  F E    G V E L      +  P       V++GL K  +    ++V+ D+
Sbjct: 128 VFGVLIIAFSE---MGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
             RG  P+ V Y T+I G C+ G    A +++ EMI K + P    Y  +I G C    +
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRI 244

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA+ + + M + G      TYNT++ G C      +A  L++EM   G+  +V+T+  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGIL 304

Query: 416 IQGYCKEGKIVN 427
           I G CK  ++V+
Sbjct: 305 IDGLCKTDEMVS 316



 Score = 46.2 bits (108), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 133/338 (39%), Gaps = 35/338 (10%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+V+   L D   +      AF++  + +   G  PN  +L   I  LC+ G I +
Sbjct: 468 GLLPDVVAYTALIDGHFKDGNTKEAFRLHKE-MQEAGLHPNVFTLSCLIDGLCKDGRISD 526

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-----DLVWKLYHDLIESGYLIQAFCN 211
           A   F  L + G   +    N       ++DR+      L   L+  + E    +     
Sbjct: 527 AIKLF--LAKTGTDTTGSKTN-------ELDRSLYQMCSLALSLFRGISEPCICVI---- 573

Query: 212 DGKVSEGYELLRQV---LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP- 267
             +V++ +    Q    L   L P  +  N+ + R+ +  N  +V      ++ +N +  
Sbjct: 574 --RVTKLFATNNQPKAHLHTHLKPPKS--NQTLKRYLQSSNTSKVLLFFRILLRKNPSSI 629

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D+F+    +         +E  ++   +   G+ P   + T++I      G + DA  M+
Sbjct: 630 DSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMF 689

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            E+  K L+    ++ S+I  Y       +A +L ++M         VT    ++     
Sbjct: 690 DEIPSKNLI----SWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADL 745

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D    +   +  +G+  D+   N+LI  Y K G+I
Sbjct: 746 GALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEI 783



 Score = 38.5 bits (88), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 40/221 (18%), Positives = 85/221 (38%), Gaps = 11/221 (4%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           + ++A      + EG ++   V+  G  P       LIS +    N      +   + ++
Sbjct: 636 FALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMFDEIPSK 695

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N      ++  VI+    +++  +A ++F  ++     PD V  T  +     +G L   
Sbjct: 696 NL----ISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVALSACADLGALDMG 751

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +   + H+GL  +    NS+I+ Y +   +  A+R    +         VT+  ++  
Sbjct: 752 EWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRFSLVL------PNDVTFMGVLMA 805

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT-YNTLIQGYCKEG 423
               G  +E    F  M +    R  I+ +  ++   C+ G
Sbjct: 806 CSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAG 846


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/476 (27%), Positives = 209/476 (43%), Gaps = 79/476 (16%)

Query: 15  NPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPL 74
           NP + ++PN         T  S    TE  K +  + + K    + LL     F  +  +
Sbjct: 158 NPSSVEDPNQS-------TSLSDSFLTE--KVLLNLKQGKLNSLRNLL-----FRLDSVV 203

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHY-GFSPDLVSCNVLFDSLVEAR----AFKVAMDFL 129
                 K + N+ L  RF   + S+   F   L S + +   LV +R    A  V +  +
Sbjct: 204 VVDVLYKCRENLQLGQRFIDSITSNCPNFKHSLQSFSAMIHILVRSRRLPDAQAVILRMV 263

Query: 130 DSTGFS----------------PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
             +G S                 NP   +L ++   ++  + E   AF  LK  G+  SI
Sbjct: 264 RKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSI 323

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
              NS L G +K+   DL W++Y +++ SG          +I A C + K+      L  
Sbjct: 324 NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSD 383

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + E G+ P+   +N LI+ +C +       EL+ +M  +   P  FTY  +INGLCK+ K
Sbjct: 384 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 443

Query: 285 RL-----------------------------------EAYRVFNDLKERGYVPDTVMYTT 309
            L                                   +A R+F+++  +G VPD V ++ 
Sbjct: 444 YLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSA 503

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I  L K G L  A K + +M + GL P+   Y  +I G+CR   + EA ++  EML++G
Sbjct: 504 LIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG 563

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                VTYNT++ GLC      EA  LF EM ++G+F D  T+ TLI GY K+G +
Sbjct: 564 CXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNM 619



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 163/347 (46%), Gaps = 30/347 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           + +N++ + R F  + S  G  PDLVS + L   L +      A+ +   + + G +P+ 
Sbjct: 475 RNDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN 533

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
               + I   C +G++ EA     ++ E G    + T+N+ L G                
Sbjct: 534 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNG---------------- 577

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                      C +  +SE  EL  ++ E G+ P+   F  LI+ + +  N  +   L  
Sbjct: 578 ----------LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFE 627

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ RN  PD  TY  +I+G CK  +  +   ++ND+  R   P+ + Y  +I+G C MG
Sbjct: 628 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 687

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +A ++W EM+ KG      T N+++ GYCR  N  +A      ML KG     +TYN
Sbjct: 688 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 747

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G       D A+ L  +M   G+  DVITYN ++ G+ ++G++
Sbjct: 748 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRM 794



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G  P + + N + + L +   +  A   LD     G SP+  +  + +   C +  +
Sbjct: 420 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 479

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESGY--------- 204
            +A   F ++   GV   + ++ SAL+G + K    D   K + D+  +G          
Sbjct: 480 MDAERIFDEMPSQGVVPDLVSF-SALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTI 538

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC +G +SE  ++  ++LE G   +   +N +++  C++K      EL   M  R 
Sbjct: 539 LIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 598

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD +T+  +ING  K     +A  +F  + +R   PD V Y T+I G CK   +    
Sbjct: 599 VFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN 658

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++W +MI + + PN  +Y  +I+GYC +  + EA RL  EM++KG+  T +T NT++ G 
Sbjct: 659 ELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 718

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           C  G   +A      M  KGI  D ITYNTLI G+ KE
Sbjct: 719 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 756



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L ++       + A + +DS    G  P   +    I  LC++G    A
Sbjct: 388 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 447

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ ++G+     T+N  L+ C + D      +++          DL+    LI  
Sbjct: 448 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 507

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G + +  +  R +   GL P+N  +  LI  FC         ++   M+ +    D
Sbjct: 508 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLD 567

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCK +   EA  +F ++ ERG  PD   +TT+I+G  K G +  A  ++ 
Sbjct: 568 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFE 627

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI + L P+  TYN++I G+C+   +E+   L  +M+ +      ++Y  LI G C  G
Sbjct: 628 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 687

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              EA+ L++EM +KG    +IT NT+++GYC+ G  V
Sbjct: 688 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 725



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 136/282 (48%), Gaps = 12/282 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+ N + + L + +    A +    +   G  P+  +    I    + G + +A
Sbjct: 563 GCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKA 622

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F  + +  +   + T+N+ + G  K    + V +L++D+I           G LI  
Sbjct: 623 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 682

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN G VSE + L  +++E G        N ++  +C   N  +  E L  M+ +   PD
Sbjct: 683 YCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD 742

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING  K      A+ + N ++  G +PD + Y  +++G  + G + +A  +  
Sbjct: 743 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 802

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +MI +G+ P+  TY S+I+G+   +NL+EA R+H EML +G+
Sbjct: 803 KMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 844



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 29/241 (12%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+V+ N L D   +    +   +    + S    PN  S  + I   C  G + EAF
Sbjct: 634 LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAF 693

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             + ++ E G   +I T N+                          +++ +C  G   + 
Sbjct: 694 RLWDEMVEKGFEATIITCNT--------------------------IVKGYCRAGNAVKA 727

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            E L  +L  G+VP+   +N LI+ F +++N  R   L++ M      PD  TY  ++NG
Sbjct: 728 DEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 787

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             +  +  EA  +   + ERG  PD   YT++I+G      L +A ++  EM+ +G +P+
Sbjct: 788 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847

Query: 339 E 339
           +
Sbjct: 848 D 848



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F+ L+  + + +      E    + ++           ++ GL K      A+ ++ ++
Sbjct: 290 VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 349

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
              G   +      +I+ LCK   + + +    +M  KG+ P+  TYN++I+ YCR   L
Sbjct: 350 VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 409

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           EEA  L   M  KG      TYN +I GLC  G+   A  + +EM + G+  D  TYN L
Sbjct: 410 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 469

Query: 416 IQGYCKEGKIVN 427
           +   C+   +++
Sbjct: 470 LVECCRNDNMMD 481



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 59/138 (42%), Gaps = 17/138 (12%)

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-----------------NEYTYNSMIHGY 349
           ++ +IH L +   L DA+ +   M+ K  +                  N   ++ ++  Y
Sbjct: 239 FSAMIHILVRSRRLPDAQAVILRMVRKSGVSRVEIVESLVLTYGNCGSNPLVFDLLVRTY 298

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            +   L E     + +  KG   +    N+L+ GL   G  D A+ +++E+ + G+  +V
Sbjct: 299 VQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNV 358

Query: 410 ITYNTLIQGYCKEGKIVN 427
            T N +I   CK  KI N
Sbjct: 359 YTLNIMINALCKNQKIEN 376


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAF 158
           GF+PD ++   L + L +      A D        P P  +     I      G +++A 
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI---PKPEIVIFNTLIHGFVTHGRLDDAK 373

Query: 159 CAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              S +    G+   + T+NS + G  K     L  ++ HD+   G          L+  
Sbjct: 374 AVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDG 433

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ E Y +L ++  DGL P    FN LIS FC++       E+   M  +   PD
Sbjct: 434 FCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 493

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +I+GLC+  +   A  +  D+   G V +TV Y T+I+   + G + +ARK+  
Sbjct: 494 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 553

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G   +E TYNS+I G CR   +++A+ L ++ML  G+  + ++ N LI GLC  G
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +EA    +EM  +G   D++T+N+LI G C+ G+I
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 159/332 (47%), Gaps = 12/332 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           + YG  PD+ + N L     +     +A++ L    + G  PN  S  + +   C+ G I
Sbjct: 381 TSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           +EA+   +++   G+  +   +N  +    K  R     +++ ++   G          L
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   ++     LLR ++ +G+V     +N LI+ F  +       +L++ MV +  
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  +I GLC++ +  +A  +F  +   G+ P  +    +I+GLC+ G + +A +
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVE 620

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
              EM+ +G  P+  T+NS+I+G CR   +E+   + +++  +G    TVT+NTL++ LC
Sbjct: 621 FQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLC 680

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             G   +A  L +E  + G   +  T++ L+Q
Sbjct: 681 KGGFVYDACLLLDEGIEDGFVPNHRTWSILLQ 712



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 126/264 (47%), Gaps = 32/264 (12%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           K+   L   G +++AFC   ++     LLR + + G VP +  +  LI    +       
Sbjct: 212 KIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEA 271

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +LL  M      PD  T+ +VI GLCK  +  EA ++ N +  RG+ PD + Y  +++G
Sbjct: 272 LQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNG 331

Query: 314 LCKMGWLGDARKMWFE-----------MIHK---------------------GLLPNEYT 341
           LCK+G +  A+ +++            +IH                      G++P+  T
Sbjct: 332 LCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCT 391

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YNS+I+GY +   +  A  +  +M +KG      +Y  L+ G C  G+ DEAY++  EM+
Sbjct: 392 YNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMS 451

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G+  + + +N LI  +CKE +I
Sbjct: 452 ADGLKPNTVGFNCLISAFCKEHRI 475



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 155/360 (43%), Gaps = 27/360 (7%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SF+   P    + L+   NV  S+  F W  S  G+        VL   L     FK   
Sbjct: 72  SFHKITPFQLYKLLELPLNVSTSMELFSWTGSQNGYRHSFDVYQVLIGKLGANGEFKT-- 129

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
             +D            L IQ + + G++ +     S +++    G        +L    +
Sbjct: 130 --ID-----------RLLIQ-MKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEMRNV 175

Query: 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +  +K Y+ ++E   L+   C+    +  Y++L + +     P    F  ++  FC 
Sbjct: 176 YSCEPTFKSYNVVLE--ILVSGNCHKVAANVFYDMLSRKIP----PTLFTFGVVMKAFCA 229

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    LL  M      P++  Y+ +I+ L K  +  EA ++  ++   G VPD   
Sbjct: 230 VNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAET 289

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +  VI GLCK   + +A KM   M+ +G  P++ TY  +++G C+I  ++ AK L   + 
Sbjct: 290 FNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP 349

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
                   V +NTLI G   HGR D+A  +  +M    GI  DV TYN+LI GY KEG +
Sbjct: 350 KP----EIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLV 405



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/296 (25%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ S  +L D   +      A + L+   + G  PN       I   C+   I EA
Sbjct: 419 GCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEA 478

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++   G    + T+NS + G  ++D       L  D+I  G          LI A
Sbjct: 479 VEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINA 538

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G++ E  +L+ +++  G   +   +N LI   C      +   L   M+    AP 
Sbjct: 539 FLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPS 598

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N +   +INGLC+S    EA     ++  RG  PD V + ++I+GLC+ G + D   M+ 
Sbjct: 599 NISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFR 658

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +G+ P+  T+N+++   C+   + +A  L  E ++ G+     T++ L+  +
Sbjct: 659 KLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILLQSI 714



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 119/274 (43%), Gaps = 12/274 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  P+ V  N L  +  +      A++    +   G  P+  +    I  LCE   I
Sbjct: 451 SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEI 510

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           + A      +   GV  +  T+N+ +   ++        KL ++++  G          L
Sbjct: 511 KHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSL 570

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+  C  G+V +   L  ++L DG  P N + N LI+  C         E    MV R  
Sbjct: 571 IKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGS 630

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  T+  +INGLC++ +  +   +F  L+  G  PDTV + T++  LCK G++ DA  
Sbjct: 631 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACL 690

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           +  E I  G +PN  T++ ++      + L+  +
Sbjct: 691 LLDEGIEDGFVPNHRTWSILLQSIIPQETLDRRR 724


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P LV+ N L   L        A+   D     G  P+  +    I  LC+ G    A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K++E G   ++  +N+ +    K          + ++++ G          ++  
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHG 124

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FCN G+V+E   L +Q++E  ++P    F  LI   C+K+       +  TM  +   PD
Sbjct: 125 FCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPD 184

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++G C   +  EA ++FN +  +G  P+   Y  +I+G CK G + +A+ +  
Sbjct: 185 VYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLA 244

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM HK L P+ +TY++++ G+C++   +EA+ L KEM   G     +TY+ ++ GLC HG
Sbjct: 245 EMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHG 304

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             DEA+ L + M +  I  ++  Y  LI+G C  GK+
Sbjct: 305 HLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKL 341



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 164/360 (45%), Gaps = 13/360 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L +  N  ++++  + +    G  P++V+ N + DSL + R    AMDF       G  P
Sbjct: 55  LCKMGNTTMALQLLKKMEEK-GCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPP 113

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +    +   C  G + EA   F ++ E  V  +  T+   + G  K       W ++
Sbjct: 114 DVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVF 173

Query: 197 HDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
             + E G          L+  +C+  ++ E  +L   +   G  P   ++N LI+  C+ 
Sbjct: 174 ETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKS 233

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                   LL  M  ++  PD FTY  ++ G C+  +  EA  +  ++   G +P+ + Y
Sbjct: 234 GRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITY 293

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           + V+ GLCK G L +A ++   M    + PN + Y  +I G C    LE A+ L   +  
Sbjct: 294 SIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFV 353

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           KG   T VTY  +I+GL   G ++EA  LF EMA  G   +  TYN +IQG+ + G   N
Sbjct: 354 KGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPN 413



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   GL P   T+N+++ G C    + +A +L  EM+  G+    +TY+T+I GLC  G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           T  A  L ++M +KG   +V+ YNT+I   CK+
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAYNTIIDSLCKD 93



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 37/59 (62%)

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           M   G   T VT+NTL++GLC   +  +A  LF+EM + G   DVITY+T+I G CK G
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMG 59



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 37/176 (21%), Positives = 71/176 (40%), Gaps = 29/176 (16%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEE 156
           YG  P+L++ +++ D L +      A + L +   +   PN     + I+ +C  G +E 
Sbjct: 284 YGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEA 343

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A   FS L   G+  ++ T+   + G +K                           G  +
Sbjct: 344 ARELFSNLFVKGIQPTVVTYTVMISGLLK--------------------------GGLSN 377

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           E  EL R++  +G +P +  +N +I  F    +      L+  MV +  + D+ T+
Sbjct: 378 EACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTF 433


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 166/339 (48%), Gaps = 14/339 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  PD+ + N+L +S         AF V    L   G  P+  +    I+ LC  G I 
Sbjct: 96  FGIPPDVYTLNILINSFCHLNRPGFAFSVLAKIL-KLGLQPDTATFTTLIRGLCVEGKIG 154

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
           +A   F K+   G   ++ T+ + + G  K+  T+   +L           D++    +I
Sbjct: 155 DALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSII 214

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + L  +++  G+ P+   +  LI   C    +  V+ LL+ M+     
Sbjct: 215 DSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIM 274

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD   +  V++ LCK  K  EA+ V + +  RG  P+ V Y  ++ G C    + +A K+
Sbjct: 275 PDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKV 334

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+H G  PN  +YN++I+GYC+I  +++A  L +EM  K     TVTYNTL+ GLC 
Sbjct: 335 FDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCH 394

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GR  +A  LF EM   G   D+ TY  L+   CK+  +
Sbjct: 395 VGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHL 433



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 14/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P  V  N L  S+ + + +         +DS G  P+  +L + I   
Sbjct: 55  FNRMLHMHP--PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSF 112

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C       AF   +K+ ++G+     T+ + + G     +      L+  +I  G+    
Sbjct: 113 CHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNV 172

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C  G  +    LLR + +    P+   +  +I   C+ +       L   
Sbjct: 173 VTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSK 232

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV +  +PD FTY  +I+ LC   +      + N +     +PD V+++TV+  LCK G 
Sbjct: 233 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGK 292

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A  +   MI +G+ PN  TYN+++ G+C    ++EA ++   M+  GY    ++YNT
Sbjct: 293 ITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNT 352

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C   R D+A +LFEEM QK +  + +TYNTL+ G C  G++
Sbjct: 353 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRL 398



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L + L +      A+  L S       P+       I  LC+   + EA
Sbjct: 167 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 226

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
           F  FSK+   G+   I T+ S +     +     V  L + +I S           ++ A
Sbjct: 227 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 286

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK++E ++++  ++  G+ P    +N L+   C +       ++  TMV    AP+
Sbjct: 287 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPN 346

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK ++  +A  +F ++ ++  +P+TV Y T++HGLC +G L DA  ++ 
Sbjct: 347 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFH 406

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  ++   C+  +L+EA  L K +           Y  +I G+C  G
Sbjct: 407 EMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAG 466

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  +F  ++ KG+  +V TY  +I G C+ G
Sbjct: 467 ELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG 501



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 148/334 (44%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ +   L  SL     +K     L+   ++   P+       +  LC+ G I EA
Sbjct: 237 GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEA 296

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   GV  ++ T+N+ + G       D   K++  ++ +GY         LI  
Sbjct: 297 HDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLING 356

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +   L  ++ +  L+P    +N L+   C          L H MVA  + PD
Sbjct: 357 YCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPD 416

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK     EA  +   ++     PD  +YT VI G+C+ G L  AR ++ 
Sbjct: 417 LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFS 476

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL PN  TY  MI+G CR   L+EA +L  EM   G      TYNT+  GL  + 
Sbjct: 477 NLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNK 536

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
               A  L +EM  +G   DV T   L++  C +
Sbjct: 537 EALRAIQLLQEMLARGFSADVSTTTLLVEMLCDD 570



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           +I  F  + +H G  PDL +  +L D L +      AM  L   + +   P+     + I
Sbjct: 401 AIALFHEMVAH-GQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 459

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             +C +G +E A   FS L   G+  +++T+                            +
Sbjct: 460 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYT--------------------------IM 493

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C  G + E  +L  ++  +G  P+   +N +     + K   R  +LL  M+AR  
Sbjct: 494 INGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGF 553

Query: 266 APDNFTYEEVINGLCKSR 283
           + D  T   ++  LC  +
Sbjct: 554 SADVSTTTLLVEMLCDDK 571



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 45/106 (42%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DA   +  M+H    P+   +N ++    +         L  +M   G      T N 
Sbjct: 48  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 107

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI   C   R   A+ +  ++ + G+  D  T+ TLI+G C EGKI
Sbjct: 108 LINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKI 153


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 174/369 (47%), Gaps = 18/369 (4%)

Query: 69  NFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF 128
            F    F +  L+  ++  +   F + L +  G++PD  + +++  SL +      A   
Sbjct: 125 TFTRNCFLQTLLENGSSDRIPAMFERMLDA--GYAPDSYTYHLVIKSLCQMNQIDKAFTM 182

Query: 129 LDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           LD     GF P  +   +  +  C++G +++A   F  +           +N+ + G  +
Sbjct: 183 LDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIA----YNAIIHGHCR 238

Query: 186 IDRTDLVW---------KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
            +  D            K+  D+     LI   C   K  +  E+L ++++ G+ P+   
Sbjct: 239 KNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVT 298

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FN ++   C+   F R   LL  M  RN  P   TY  +I+GLCK +    A  + ++  
Sbjct: 299 FNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFV 358

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G+VPD V Y+ +  GLCK G + +A ++  EM  KG  PN  TYN++I G C+    E
Sbjct: 359 SSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTE 418

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +A  L + ++  G+    VTY  ++ GLC  GR D+A  + E M ++G    VITY  L+
Sbjct: 419 KAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALM 478

Query: 417 QGYCKEGKI 425
           +G C+ G++
Sbjct: 479 EGLCRTGRV 487



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 189/430 (43%), Gaps = 70/430 (16%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK---QQNNVLLSI 90
           K    +YT + +  CK  R K   E  +  +IPS    D + +   +    ++N+   ++
Sbjct: 192 KPEVSVYTILTRAFCKTGRLKDALE--IFRNIPS---PDAIAYNAIIHGHCRKNDCDGAL 246

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
            F + ++     +PD+ + N+L D L +A     A + L      G +P+  +    +  
Sbjct: 247 EFLKEMNERK-VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDG 305

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           LC++G  E A    + + E     S  T+N+                          LI 
Sbjct: 306 LCKAGKFERAHSLLAVMAERNCRPSCCTYNT--------------------------LIS 339

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C    V    +L+ + +  G VP+   ++ L    C++       EL+  M  +   P
Sbjct: 340 GLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTP 399

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+GLCK+ K  +AY +   L   G+VPD V YT ++ GLCK G L  A KM 
Sbjct: 400 NLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMV 459

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--------------GYGET 373
             M+ +G  P+  TY +++ G CR   ++EA  + KEM+ K              GY ++
Sbjct: 460 EGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKS 519

Query: 374 TVT------------------YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           + T                  YN L+ G C  GR DE  ++FE+MA +G   ++ TYN +
Sbjct: 520 SRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIV 579

Query: 416 IQGYCKEGKI 425
           + G CK GK+
Sbjct: 580 MDGLCKHGKV 589



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 166/341 (48%), Gaps = 20/341 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           S  G +P+LV+ N L D L +A   + A + L+S   +GF P+  +  + +  LC+ G +
Sbjct: 393 SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRL 452

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           ++A      + + G   S+ T+ + + G  +  R D    ++ +++             L
Sbjct: 453 DKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSL 512

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGL--VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +  +C   +  E  +++     DG+   P    +N L+  +C++     +  +   M  R
Sbjct: 513 VNGYCKSSRTKEAQKVV-----DGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACR 567

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  V++GLCK  K  EA+     +   G VPD V Y  +I GL K     +A
Sbjct: 568 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEA 627

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           R++  +MI  G+ P+  TYN+++  +C+ +  ++A  + K M+  G     VTYNTLI+G
Sbjct: 628 RQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 687

Query: 384 LCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEG 423
           L    R  +AY L  EM + G +     TYNT+I   CKEG
Sbjct: 688 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 728



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 167/369 (45%), Gaps = 50/369 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P   + N L   L + +    A D +D   S+GF P+  +  +    LC+ G I+EAF  
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 388

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++   G   ++ T+N+ + G  K  +T+  ++L   L+ SG+         ++   C 
Sbjct: 389 VKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCK 448

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT---MVARNRAPD 268
           +G++ +  +++  +L+ G  P    +  L+   C     GRV E  H    MV+++   D
Sbjct: 449 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRT---GRVDEAHHIFKEMVSKDCTAD 505

Query: 269 NFTYEEVINGLCKSRKRLEAYRV--------------------------------FNDLK 296
              Y  ++NG CKS +  EA +V                                F D+ 
Sbjct: 506 ALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMA 565

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            RG VP+   Y  V+ GLCK G + +A      M   G +P+  +YN +I G  +    +
Sbjct: 566 CRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPK 625

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA+++  +M+  G     VTYNTL+A  C   R D+A  + + M + G+  D +TYNTLI
Sbjct: 626 EARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLI 685

Query: 417 QGYCKEGKI 425
            G  +  ++
Sbjct: 686 SGLSQTNRL 694



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 164/338 (48%), Gaps = 17/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N++ D L +      A  FL+S    G  P+  S  + I  L ++   +EA
Sbjct: 568 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEA 627

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ + G+     T+N+ +    K +R D    +  ++I++G          LI  
Sbjct: 628 RQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 687

Query: 209 FCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                ++ + YEL+ ++L +G +V   T +N +I R C++    +   L+  M       
Sbjct: 688 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 747

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY   I+ LCK  +  EA  +   L E   + D V YTTVI GLCK   L  A K+ 
Sbjct: 748 NTVTYNIFIDRLCKEGRLDEASSL---LSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLA 804

Query: 328 FEMIH-KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
            EM+  KGL    +T+N +I  + +   L+EA  L   M+ +G   + +TYN +I  LC 
Sbjct: 805 REMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLCK 864

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             + D+A+ LF+EMA +GI    ++Y  LI G C +G+
Sbjct: 865 LDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGR 902



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 145/305 (47%), Gaps = 16/305 (5%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +  + +  LC+ G ++EAF     +   G    + ++N  + G  K  +    
Sbjct: 568 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEA 627

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++   +I++G          L+  FC + +  +   +L+ +++ G+ P+N  +N LIS 
Sbjct: 628 RQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 687

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNF--TYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             +    G   EL+H M+ RN    +   TY  +I+ LCK     +A  + + +   G  
Sbjct: 688 LSQTNRLGDAYELMHEML-RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVE 746

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
            +TV Y   I  LCK G L +A  +  EM     L +E +Y ++I G C+ + L+ A +L
Sbjct: 747 ANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKL 803

Query: 362 HKEMLD-KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            +EM+  KG   T+ T+N LI       R DEA  L   M Q+G    VITYN +I   C
Sbjct: 804 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITYNMVITCLC 863

Query: 421 KEGKI 425
           K  K+
Sbjct: 864 KLDKV 868



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 149/325 (45%), Gaps = 18/325 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCL 148
           F + +HS  G  PD+VS N++ D L +A   K A   LD     G  P+  +    +   
Sbjct: 595 FLESMHSA-GCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 653

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C+    ++A      + + GV     T+N+ + G  + +R    ++L H+++ +G ++ A
Sbjct: 654 CKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSA 713

Query: 209 ----------FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                      C +G + +   L+  +   G+      +N  I R C++      S LL 
Sbjct: 714 CTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLS 773

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKM 317
            M   +   D  +Y  VI GLCK+ +   A ++  ++   +G    +  +  +I    K 
Sbjct: 774 EM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 830

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             L +A  +   M+ +G  P+  TYN +I   C++D +++A  L  EM  +G   ++V+Y
Sbjct: 831 KRLDEALTLLGLMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSY 890

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQ 402
             LI GLC  GR  EA  + EEMA 
Sbjct: 891 TVLIYGLCGQGRGKEALQVLEEMAS 915



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/294 (25%), Positives = 122/294 (41%), Gaps = 66/294 (22%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H        +Q    +G       +  ++L+ G  P++  ++ +I   C+     +   +
Sbjct: 123 HSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTM 182

Query: 257 L--------------HTMVARN-----------------RAPDNFTYEEVING------- 278
           L              +T++ R                   +PD   Y  +I+G       
Sbjct: 183 LDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFRNIPSPDAIAYNAIIHGHCRKNDC 242

Query: 279 ----------------------------LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                                       LCK+ K  +A  + +++ +RG  PDTV + ++
Sbjct: 243 DGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSI 302

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           + GLCK G    A  +   M  +   P+  TYN++I G C+  N++ AK L  E +  G+
Sbjct: 303 MDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGF 362

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               VTY+ L  GLC  GR DEA+ L +EM+ KG   +++TYNTLI G CK  K
Sbjct: 363 VPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASK 416



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 33/206 (16%)

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVIN--GLCKS----RKRLEAYR--------- 290
           + K+ G     LH   AR  A      ++V++  GL +S    R+RLE +R         
Sbjct: 38  DGKSSGIPHRQLHLSTARKLARSESLQQDVLDLLGLLQSGSNIRERLEQWRGTLQPAVVS 97

Query: 291 -VFNDLKE-------------RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            V   LK+             RG+   T      +  L + G       M+  M+  G  
Sbjct: 98  RVLQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYA 157

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+ YTY+ +I   C+++ +++A  +  +   +G+      Y  L    C  GR  +A  +
Sbjct: 158 PDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEI 217

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKE 422
           F  +       D I YN +I G+C++
Sbjct: 218 FRNIPSP----DAIAYNAIIHGHCRK 239


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 169/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S DL S  +L         F +A+  L      GF P+  +L   +   C+    +EA
Sbjct: 645 GISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEA 704

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + E+G+  ++  +N+ + G  K    +   ++++ + + G          LI  
Sbjct: 705 VSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISG 764

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ ++   LLR +++  + P    F  LI  F ++ N      L   M+ R+  P+
Sbjct: 765 LCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPN 824

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C   +  +A  +F+ +  +G  PD V Y T+I G CK   + D  K++ 
Sbjct: 825 ILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFC 884

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM H+GL+ + +TYN++IHGYC+   L  A+++   M+D G     VTYN L+  LC +G
Sbjct: 885 EMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNG 944

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  + E++ +  +  D+ITYN +IQG C+  K+
Sbjct: 945 KIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKV 981



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 146/280 (52%), Gaps = 9/280 (3%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           ++AF  F ++ +     SI  +   L    K+++ D+V  L+H         DL     L
Sbjct: 597 DDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTIL 656

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC   + S    LL ++++ G  P       L++ FC+   F     L+ +M     
Sbjct: 657 IHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGL 716

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+   Y  VINGLCK+R    A  +F  ++++G V D V Y T+I GLC  G   DA +
Sbjct: 717 EPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAAR 776

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M+ + + PN   + ++I  + +  NL EAK L+KEM+ +      +TYN+LI G C
Sbjct: 777 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFC 836

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + GR  +A H+F+ M  KG F DV+TYNTLI G+CK  ++
Sbjct: 837 IQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 876



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 151/325 (46%), Gaps = 29/325 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V    +  ++ +   F + +     +++ G S +  S  + I C C       A   
Sbjct: 613 PSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFSLALAL 672

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ ++G   SI T                           G L+  FC   +  E   
Sbjct: 673 LGKMMKLGFQPSIVTL--------------------------GSLLNGFCQGNRFQEAVS 706

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+  + E GL P    +N +I+  C+ ++     E+ + M  +    D  TY  +I+GLC
Sbjct: 707 LVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLC 766

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
            S +  +A R+  D+ +R   P+ + +T +I    K G L +A+ ++ EMI + + PN  
Sbjct: 767 NSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNIL 826

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYNS+I+G+C    L +AK +   M+ KG     VTYNTLI G C   R ++   LF EM
Sbjct: 827 TYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEM 886

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
             +G+  D  TYNTLI GYC+ GK+
Sbjct: 887 THQGLVGDAFTYNTLIHGYCQAGKL 911



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 161/351 (45%), Gaps = 15/351 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++ +F      +G S DL S  +L           +A+  L      G+ P+  +    +
Sbjct: 83  TVIYFSQQMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLL 142

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----------KIDRTDLVWK 194
              C    I +AF   + + + G   ++  +N+ L+ C+            ++  +   +
Sbjct: 143 HGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNT-LIDCLCKNGDVNIALELLNEMEKKGR 201

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  DL+    L+   C  G+  +   +LR + +  + P+   F  LI  F ++ N     
Sbjct: 202 LAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQ 261

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           EL   M+  +  P+  TY  +INGLC   +   A + F+ +  +G  P+ V Y T+I+G 
Sbjct: 262 ELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGF 321

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK   + D  K++  M  +GL+ + +TYN++IHGYC++  L  AK +   M+  G     
Sbjct: 322 CKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDI 381

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +T+  L+ GLC++G    A   F +M     +  ++ YN +I G CK  K+
Sbjct: 382 ITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKV 432



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 153/336 (45%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P +V+   L            A   + S   +G+ PN       I CLC++G +  A
Sbjct: 130 GYDPSIVTFGSLLHGFCLRNRIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIA 189

Query: 158 FCAFSKLKEMGVFGS-IKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQ 207
               +++++ G   + + T+N+ L G           +I R     ++  D+     LI 
Sbjct: 190 LELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALID 249

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF   G + E  EL +Q+L+  + P    +N LI+  C         +    M ++   P
Sbjct: 250 AFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFP 309

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +ING CKSR+  +  ++F  +   G V DT  Y T+IHG C++G L  A+ ++
Sbjct: 310 NVVTYNTLINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIF 369

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  G+ P+  T+  ++HG C    +  A     +M         V YN +I GLC  
Sbjct: 370 SWMVSCGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKA 429

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            + +EA+ LF  +  +G+  D  TY  +I G CK G
Sbjct: 430 DKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNG 465



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 151/351 (43%), Gaps = 47/351 (13%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
            GF P +V+   L +   +   F+ A+  +DS    G  PN       I  LC++  +  A
Sbjct: 680  GFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNA 739

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               F  +++ G+     T+N+ + G     R     +L  D+++            LI  
Sbjct: 740  LEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDT 799

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            F  +G + E   L ++++   + P    +N LI+ FC +   G    +   MV++   PD
Sbjct: 800  FVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPD 859

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +I G CKS++  +  ++F ++  +G V D   Y T+IHG C+ G L  A+K++ 
Sbjct: 860  VVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFN 919

Query: 329  EMIHKGLLPNEYTYNSM-----------------------------------IHGYCRID 353
             M+  G+ P+  TYN +                                   I G CR D
Sbjct: 920  RMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRND 979

Query: 354  NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
             ++EA  L + +  KG     + Y T+I+GLC +G   EA  L   M + G
Sbjct: 980  KVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMKEDG 1030



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 104/213 (48%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K  + + L  ++L+   +P    F ++++   +   F  V  L H M     + D +++ 
Sbjct: 595 KFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFT 654

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+  C+  +   A  +   + + G+ P  V   ++++G C+     +A  +   M   
Sbjct: 655 ILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAEL 714

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           GL PN   YN++I+G C+  +L  A  +   M  KG     VTYNTLI+GLC  GR  +A
Sbjct: 715 GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDA 774

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             L  +M ++ I  +VI +  LI  + KEG ++
Sbjct: 775 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 807



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 4/228 (1%)

Query: 202 SGY---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           SGY   L   F +  +  +  +L  ++++   +P    F +L++     + +  V     
Sbjct: 30  SGYREKLRTGFLHSIRFEDALDLFLEMVQSQPLPSVVDFTRLLTAIANLRRYETVIYFSQ 89

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M     + D +++  +I+  C+  +   A  +   + + GY P  V + +++HG C   
Sbjct: 90  QMELFGISHDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRN 149

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTY 377
            + DA  +   M+  G  PN   YN++I   C+  ++  A  L  EM  KG      VTY
Sbjct: 150 RIHDAFSLVASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTY 209

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NTL+ GLC  G   +A  +  +M ++ I  DV T+  LI  + K+G +
Sbjct: 210 NTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNL 257



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 116/271 (42%), Gaps = 29/271 (10%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+ +   L D+ V+      A +    +  +   PN  +    I  LC  G +  A 
Sbjct: 237 INPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAK 296

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             F  +   G F ++ T+N+                          LI  FC   +V +G
Sbjct: 297 KTFDLMASKGCFPNVVTYNT--------------------------LINGFCKSRRVEDG 330

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            +L +++  +GLV +   +N LI  +C+        ++   MV+    PD  T+  +++G
Sbjct: 331 MKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHG 390

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LC + +   A   FND++        V Y  +IHGLCK   + +A +++  +  +G+ P+
Sbjct: 391 LCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPD 450

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
             TY  MI G C+     EA  L + M + G
Sbjct: 451 ARTYTIMILGLCKNGPRREADELFRRMKEDG 481



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 120/272 (44%), Gaps = 12/272 (4%)

Query: 104  PDLVSCNVLFDSLV-EARAFKVAMDFLDSTGFSPNPNSLEL--YIQCLCESGLIEEAFCA 160
            P+++    L D+ V E    +    + +    S +PN L     I   C  G + +A   
Sbjct: 788  PNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHM 847

Query: 161  FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            F  +   G F  + T+N+ + G  K  R +   KL+ ++   G          LI  +C 
Sbjct: 848  FDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQ 907

Query: 212  DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             GK++   ++  ++++ G+ P+   +N L+   C      +   ++  +       D  T
Sbjct: 908  AGKLNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIIT 967

Query: 272  YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
            Y  +I G+C++ K  EA+ +F  L  +G   D + Y T+I GLC+ G   +A K+   M 
Sbjct: 968  YNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNGLRREADKLCTRMK 1027

Query: 332  HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              G +P+E  Y+  +  +    + E  K +H+
Sbjct: 1028 EDGFMPSERIYDETLRDHYTSLSAELIKAVHE 1059



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 162/377 (42%), Gaps = 47/377 (12%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
            F W+ S  G +PD+++  +L   L    E  +  V  + + S        +  + I  L
Sbjct: 368 IFSWMVS-CGVTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGL 426

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C++  +EEA+  F +L   GV    +T+   +LG  K        +L+  + E G + QA
Sbjct: 427 CKADKVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGIICQA 486

Query: 209 FCNDG---------KVSEGYELL-----RQVLEDGLV----PENTAFNKL-----ISRFC 245
              DG         +VS G  ++     R ++E G +     + T ++ L     I+   
Sbjct: 487 --EDGHLGEHGTNNQVSLGTIIICPKRRRSIMESGDLYYYYSDTTLWSSLVGLIPIASSS 544

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFT---------------YEEVINGLCKSRKRLEAYR 290
             K F R   LL   + R   P++ +               Y E +       K  +A+ 
Sbjct: 545 SVKGFVRRHLLL---LERGNNPESRSFSGASHHHHHHHHHHYRERLRSELHCIKFDDAFG 601

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +   +P  V +T V+  + KM        ++ +M + G+  + Y++  +IH +C
Sbjct: 602 LFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLFHKMENLGISHDLYSFTILIHCFC 661

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R      A  L  +M+  G+  + VT  +L+ G C   R  EA  L + MA+ G+  +V+
Sbjct: 662 RCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVV 721

Query: 411 TYNTLIQGYCKEGKIVN 427
            YNT+I G CK   + N
Sbjct: 722 IYNTVINGLCKNRDLNN 738



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 86/444 (19%), Positives = 161/444 (36%), Gaps = 82/444 (18%)

Query: 57  WEQT--LLSDIPSFNFNDPLF-----FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSC 109
           W Q   +L D+     N  +F        F+KQ N       + Q L S  G  P+ V+ 
Sbjct: 222 WRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIG--PNTVTY 279

Query: 110 NVLFDSL-VEARAF--KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N L + L +  R +  K   D + S G  PN  +    I   C+S  +E+    F ++  
Sbjct: 280 NSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYR 339

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSE 217
            G+ G   T+N+ + G  ++ +  +   ++          D+I    L+   C +G++  
Sbjct: 340 EGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGS 399

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                  +          A+N +I   C+        EL   +      PD  TY  +I 
Sbjct: 400 AMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTYTIMIL 459

Query: 278 GLCKS---RKRLEAYRVFND-----------LKERG------------------------ 299
           GLCK+   R+  E +R   +           L E G                        
Sbjct: 460 GLCKNGPRREADELFRRMKEDGIICQAEDGHLGEHGTNNQVSLGTIIICPKRRRSIMESG 519

Query: 300 ----YVPDTVMYTTVIHGLCKMGWLGDAR---KMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
               Y  DT ++++++ GL  +      +   +    ++ +G  P   +++   H +   
Sbjct: 520 DLYYYYSDTTLWSSLV-GLIPIASSSSVKGFVRRHLLLLERGNNPESRSFSGASHHHHHH 578

Query: 353 DNLEEAKRLHKEM----LDKGYG-----------ETTVTYNTLIAGLCLHGRTDEAYHLF 397
            +    +RL  E+     D  +G            + V +  ++  +    + D   +LF
Sbjct: 579 HHHHYRERLRSELHCIKFDDAFGLFCEMLQSRPIPSIVDFTRVLTAIAKMNKFDIVIYLF 638

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
            +M   GI  D+ ++  LI  +C+
Sbjct: 639 HKMENLGISHDLYSFTILIHCFCR 662


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++  N LF ++ + + +++ +     ++S G + +  +L + I C C    +  AF  
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G       +N+ L G     R     +L   ++E G+         L+   C 
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKVS+   L+ +++E G  P    +  +++  C+        ELL  M  RN   D   
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK      A+ +FN+++ +G+  D + Y T+I G C  G   D  K+  +MI
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + PN  T++ +I  + +   L EA +L KEM+ +G    T+TYN+LI G C   R +
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  + + M  KG   D++T+N LI GYCK  +I
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V  N L + L        A++ +D     G  P   +L   +  LC +G + +A
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ E G   +  T+   L    K  +T L  +L           D ++   +I  
Sbjct: 213 VVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG +   + L  ++   G   +   +N LI  FC    +   ++LL  M+ R  +P+
Sbjct: 273 LCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPN 332

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K  EA ++  ++ +RG  P+T+ Y ++I G CK   L +A +M  
Sbjct: 333 VVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVD 392

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI KG  P+  T+N +I+GYC+ + +++   L +EM  +G    TVTYNTL+ G C  G
Sbjct: 393 LMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSG 452

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + + A  LF+EM  + +  D+++Y  L+ G C  G++
Sbjct: 453 KLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGEL 489



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 167/339 (49%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
             G  P L++ N L + L    +     V +D +  TGF PN  +    +  +C+SG   
Sbjct: 186 EMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTA 245

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
            A     K++E  +      ++  + G  K    D  + L++         D+I    LI
Sbjct: 246 LAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLI 305

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FCN G+  +G +LLR +++  + P    F+ LI  F ++       +LL  M+ R  A
Sbjct: 306 GGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIA 365

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I+G CK  +  EA ++ + +  +G  PD + +  +I+G CK   + D  ++
Sbjct: 366 PNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLEL 425

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM  +G++ N  TYN+++ G+C+   LE AK+L +EM+ +      V+Y  L+ GLC 
Sbjct: 426 FREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCD 485

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +G  ++A  +F ++ +  +  D+  Y  +I G C   K+
Sbjct: 486 NGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKV 524



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 149/329 (45%), Gaps = 14/329 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D+++ N L      A       K+  D +     SPN  +  + I    + G + E
Sbjct: 293 GFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK-ISPNVVTFSVLIDSFVKEGKLRE 351

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A     ++ + G+  +  T+NS + G  K +R +   ++   +I  G          LI 
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C   ++ +G EL R++   G++     +N L+  FC+        +L   MV+R   P
Sbjct: 412 GYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRP 471

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y+ +++GLC + +  +A  +F  +++     D  +Y  +IHG+C    + DA  ++
Sbjct: 472 DIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLF 531

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+  +   YN MI   CR D+L +A  L ++M ++G+    +TYN LI      
Sbjct: 532 CSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGD 591

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
                A  L EEM   G   DV T   +I
Sbjct: 592 DDATTAAELIEEMKSSGFPADVSTVKMVI 620



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 118/264 (44%), Gaps = 41/264 (15%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y D + SG +        K  +  +L R +++   +P    FN+L S   + K +  V  
Sbjct: 56  YRDKLSSGLV------GIKADDAVDLFRDMIQSRPLPTVIDFNRLFSAIAKTKQYELVLA 109

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M ++  A   +T   +IN  C+ RK   A+     + + GY PDTV++ T+++GLC
Sbjct: 110 LCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLC 169

Query: 316 -------------KM----------------------GWLGDARKMWFEMIHKGLLPNEY 340
                        +M                      G + DA  +   M+  G  PNE 
Sbjct: 170 LECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEV 229

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY  +++  C+      A  L ++M ++      V Y+ +I GLC  G  D A++LF EM
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEM 289

Query: 401 AQKGIFRDVITYNTLIQGYCKEGK 424
             KG   D+ITYNTLI G+C  G+
Sbjct: 290 EIKGFKADIITYNTLIGGFCNAGR 313



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/279 (19%), Positives = 105/279 (37%), Gaps = 51/279 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ ++ N L D   +    + A+  +D   S G  P+  +  + I   C++  I++ 
Sbjct: 363 GIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDG 422

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI----------------- 200
              F ++   GV  +  T+N+ + G  +  + ++  KL+ +++                 
Sbjct: 423 LELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDG 482

Query: 201 --ESGYL-------------------------IQAFCNDGKVSEGYELLRQVLEDGLVPE 233
             ++G L                         I   CN  KV + ++L   +   G+  +
Sbjct: 483 LCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLD 542

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             A+N +IS  C K +  +   L   M     APD  TY  +I           A  +  
Sbjct: 543 ARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIE 602

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
           ++K  G+  D      VI+ L      G+  K + +M+ 
Sbjct: 603 EMKSSGFPADVSTVKMVINMLSS----GELDKSFLDMLS 637


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/335 (31%), Positives = 171/335 (51%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D +S   L   L +    + A+D L   D     PN       I  +C+  L+ EA
Sbjct: 185 GFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEA 244

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CI--KI-DRTDLVWKLY-----HDLIESGYLIQA 208
           F  FS++   G+   + T+++ + G CI  K+ D  DL  K+       D+     L+ A
Sbjct: 245 FDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNA 304

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC DGK+ EG  +   +++ G+ P    +N L+  +C  K   +   + +TM      PD
Sbjct: 305 FCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPD 364

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +K  EA  +F ++  +  +PD V Y+++I GL K G +  A ++  
Sbjct: 365 IQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVD 424

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +G+ P   TYNS++   C+I  +++A  L  ++ DKG      TY+ LI GLC  G
Sbjct: 425 QMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSG 484

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + ++A  +FE +  KG   +V TY  +IQG+C EG
Sbjct: 485 KLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEG 519



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 167/335 (49%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P     N +  SLV+++ +   +     ++  G  PN  +  + I C C+ GLI  AF 
Sbjct: 82  TPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFS 141

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIK-------IDRTDLVWKLYH-DLIESGYLIQAFC 210
            F+K+ +MG      T+ + + G C+K       +    +V   +H D I  G LI   C
Sbjct: 142 VFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIHGLC 201

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+     +LL++V  + + P    +N +I   C+ K      +L   M+++  +PD  
Sbjct: 202 KVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVV 261

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+G C   K  +A  +FN +      PD   +  +++  CK G + + + ++  M
Sbjct: 262 TYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMM 321

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G+ PN  TYNS++ GYC +  + +AK +   M   G      +Y+ +I G C   + 
Sbjct: 322 MKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKF 381

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           DEA +LF+EM +K I  DV+TY++LI G  K G+I
Sbjct: 382 DEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRI 416



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 179/369 (48%), Gaps = 18/369 (4%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARA 121
           P+F FN  L      K  + VL    +        G  P+LV+CN+L +   +      A
Sbjct: 84  PAFEFNKILGSLVKSKHYHTVL----YLSQKMEFRGIKPNLVNCNILINCFCQLGLIPFA 139

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F V    L   G+ P+  +    I+ LC  G I++AF    K+  +G      ++ + + 
Sbjct: 140 FSVFAKIL-KMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYGTLIH 198

Query: 182 GCIKIDRT----DLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K+  T    DL+ ++  +L++        +I + C    V+E ++L  +++  G+ P
Sbjct: 199 GLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISP 258

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   ++ LIS FC         +L + M+  N  PD +T+  ++N  CK  K  E   VF
Sbjct: 259 DVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVF 318

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + + ++G  P+ V Y +++ G C +  +  A+ ++  M   G+ P+  +Y+ MI+G+C+I
Sbjct: 319 DMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKI 378

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              +EA  L KEM  K      VTY++LI GL   GR   A  L ++M  +G+   + TY
Sbjct: 379 KKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTY 438

Query: 413 NTLIQGYCK 421
           N+++   CK
Sbjct: 439 NSILDALCK 447



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 136/317 (42%), Gaps = 12/317 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ + L            A+D  +        P+  +  + +   C+ G ++E 
Sbjct: 255 GISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKMKEG 314

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  + + G+  +  T+NS + G   +   +    +++ + + G          +I  
Sbjct: 315 KTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMING 374

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   K  E   L +++    ++P+   ++ LI    +        +L+  M  R   P 
Sbjct: 375 FCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPT 434

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK  +  +A  +   LK++G  P+   Y+ +I GLC+ G L DARK++ 
Sbjct: 435 IRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFE 494

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ KG   N  TY  MI G+C      EA  L  +M D G      TY  +I  L    
Sbjct: 495 GLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEIIILSLFKKD 554

Query: 389 RTDEAYHLFEEMAQKGI 405
             D A  L  EM  +G+
Sbjct: 555 ENDMAEKLLREMIARGV 571



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 107/218 (49%)

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F ++  V +   L  ++L     P    FNK++    + K++  V  L   M  R   P
Sbjct: 59  TFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKP 118

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +      +IN  C+      A+ VF  + + GYVPDT+ +TT+I GLC  G +  A    
Sbjct: 119 NLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFH 178

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++  G   ++ +Y ++IHG C++     A  L + +         V YNT+I  +C  
Sbjct: 179 DKVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKV 238

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +EA+ LF EM  KGI  DV+TY+ LI G+C  GK+
Sbjct: 239 KLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKL 276



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 113/283 (39%), Gaps = 47/283 (16%)

Query: 104 PDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L ++  +    +  K   D +   G  PN  +    +   C    + +A   
Sbjct: 293 PDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSI 352

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F+ + + GV   I++++  + G  KI + D    L+          D++    LI     
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSK 412

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++S   +L+ Q+ + G+ P    +N ++   C+     +   LL  +  +   P+ +T
Sbjct: 413 SGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYT 472

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA-------- 323
           Y  +I GLC+S K  +A +VF  L  +G+  +   YT +I G C  G   +A        
Sbjct: 473 YSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKME 532

Query: 324 ---------------------------RKMWFEMIHKGLLPNE 339
                                       K+  EMI +G+ P +
Sbjct: 533 DNGCIPDAKTYEIIILSLFKKDENDMAEKLLREMIARGVRPRQ 575


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 180/379 (47%), Gaps = 50/379 (13%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEAR-----AFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           L   +GF P ++S N + D+ + ++     A  V  + L+S   SPN  +  + I+  C 
Sbjct: 159 LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ-VSPNVFTYNILIRGFCF 217

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIE 201
           +G I+ A   F K++  G   ++ T+N+ + G  K+ + D  +KL           +LI 
Sbjct: 218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS 277

Query: 202 SGYLIQAFCNDGKVSE-----------GYEL------------------------LRQVL 226
              +I   C +G++ E           GY L                          ++L
Sbjct: 278 YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEML 337

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             GL P    +  LI   C+  N  R  E L  M  R   P+  TY  +++G  +     
Sbjct: 338 RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMN 397

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EAYRV  ++ + G+ P  V Y  +I+G C  G + DA  +  +M  KGL P+  +Y++++
Sbjct: 398 EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVL 457

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G+CR  +++EA R+ +EM++KG    T+TY++LI G C   RT EA  L+EEM + G+ 
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLP 517

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D  TY  LI  YC EG +
Sbjct: 518 PDEFTYTALINAYCMEGDL 536



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 165/352 (46%), Gaps = 13/352 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSL 141
           N+ +++  F  + +  G  P++V+ N L D   + R        L S    G  PN  S 
Sbjct: 220 NIDVALTLFDKMETK-GCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISY 278

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + I  LC  G ++E     +++   G      T+N+ + G  K         ++ +++ 
Sbjct: 279 NVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLR 338

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          LI + C  G ++   E L Q+   GL P    +  L+  F +K     
Sbjct: 339 HGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNE 398

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +L  M     +P   TY  +ING C + K  +A  V  D+KE+G  PD V Y+TV+ 
Sbjct: 399 AYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLS 458

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C+   + +A ++  EM+ KG+ P+  TY+S+I G+C     +EA  L++EML  G   
Sbjct: 459 GFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPP 518

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              TY  LI   C+ G  ++A  L  EM +KG+  DV+TY+ LI G  K+ +
Sbjct: 519 DEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSR 570



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 172/366 (46%), Gaps = 32/366 (8%)

Query: 92  FFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLEL 143
           F Q L  H     +G +P +++   L  S+ +A     AM+FLD     G  PN  +   
Sbjct: 326 FHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTT 385

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW--------K 194
            +    + G + EA+    ++ + G   S+ T+N+ + G C+     D +          
Sbjct: 386 LVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKG 445

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  D++    ++  FC    V E   + R+++E G+ P+   ++ LI  FCE++      
Sbjct: 446 LSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +L   M+     PD FTY  +IN  C      +A ++ N++ E+G +PD V Y+ +I+GL
Sbjct: 506 DLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYN---------------SMIHGYCRIDNLEEAK 359
            K     +A+++  ++ ++  +P++ TY+               S+I G+C    + EA 
Sbjct: 566 NKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEAD 625

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           ++ + ML K +      YN +I G C  G   +AY L++EM + G     +T   L++  
Sbjct: 626 QVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKAL 685

Query: 420 CKEGKI 425
            KEGK+
Sbjct: 686 HKEGKV 691



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 166/329 (50%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L+S NV+ + L  E R  +V+  +  ++  G+S +  +    I+  C+ G   +A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQA 329

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++   G+  S+ T+ S +    K    +   +    +   G          L+  
Sbjct: 330 LVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G ++E Y +LR++ ++G  P    +N LI+  C          +L  M  +  +PD
Sbjct: 390 FSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPD 449

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  V++G C+S    EA RV  ++ E+G  PDT+ Y+++I G C+     +A  ++ 
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYE 509

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  GL P+E+TY ++I+ YC   +LE+A +LH EM++KG     VTY+ LI GL    
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQS 569

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           RT EA  L  ++  +      +TY+TLI+
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIE 598



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 182/423 (43%), Gaps = 71/423 (16%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN-VLFDSLVEARAFK-- 123
           S NF         LK QN+  L ++F  W + H  F+   + C  +    L + + +K  
Sbjct: 43  SANFTPEAASNLLLKSQNDQALILKFLNWANPHQFFT---LRCKCITLHILTKFKLYKTA 99

Query: 124 ------VAMDFLDSTGFSPNPNSL-ELYIQCLCESGLIEEAFCAFSKL------------ 164
                 VA   LD    S    SL E Y  C   S + +    ++S+L            
Sbjct: 100 QILAEDVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHL 159

Query: 165 -KEMGVFGSIKTWNSALLGCIKIDRT-DLVWKLYHDLIES---------GYLIQAFCNDG 213
            +  G    + ++N+ L   I+  R       ++ +++ES           LI+ FC  G
Sbjct: 160 AQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAG 219

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
            +     L  ++   G +P    +N LI  +C+ +      +LL +M  +   P+  +Y 
Sbjct: 220 NIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYN 279

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            VINGLC+  +  E   V  ++  RGY  D V Y T+I G CK G    A  M  EM+  
Sbjct: 280 VVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRH 339

Query: 334 GLLPNEYTYNSMIHGYCRIDN-----------------------------------LEEA 358
           GL P+  TY S+IH  C+  N                                   + EA
Sbjct: 340 GLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEA 399

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            R+ +EM D G+  + VTYN LI G C+ G+ ++A  + E+M +KG+  DV++Y+T++ G
Sbjct: 400 YRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSG 459

Query: 419 YCK 421
           +C+
Sbjct: 460 FCR 462



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-SRFCEKKNFGRVSELLHTMVAR 263
           +++++     + +   ++      G +P   ++N ++ +    K+N      +   M+  
Sbjct: 140 VVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLES 199

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             +P+ FTY  +I G C +     A  +F+ ++ +G +P+ V Y T+I G CK+  + D 
Sbjct: 200 QVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDG 259

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K+   M  KGL PN  +YN +I+G CR   ++E   +  EM  +GY    VTYNTLI G
Sbjct: 260 FKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKG 319

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  G   +A  +  EM + G+   VITY +LI   CK G +
Sbjct: 320 YCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 103/341 (30%), Positives = 165/341 (48%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+   L   L        A+DF      T   PN  +    +  LC  G I
Sbjct: 141 TKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKID---------RTDLVWKLYHDLIESGY 204
            EA     ++ E G+  +  T+ + + G C K D         + + V  +  +++    
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I + C DG+ S+   L  ++ E G+ P+   +N +I  FC    +    +LL  M+ R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  +IN   K  K  EA  +++++  RG +P+T+ Y+++I G CK   L  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M++ M  KG  PN  T+N++I GYC    +++   L  EM + G    T TYNTLI G 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L G  + A  L +EM   G+  D++T +TL+ G C  GK+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 150/296 (50%), Gaps = 10/296 (3%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F K+ ++G+   + T+ + L G    DR       +H +
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQM 175

Query: 200 IES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            E+           L+   C +G++ E   LL +++EDGL P    +  ++   C+K + 
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 251 GRVSELLHTM-VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                LL  M    +  P+   Y  +I+ LCK  +  +A  +F +++E+G  PD   Y +
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C  G   DA ++  EM+ + + P+  TYN++I+ + +     EA+ L+ EML +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+TY+++I G C   R D A H+F  MA KG   ++IT+NTLI GYC   +I
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 165/353 (46%), Gaps = 33/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL + N +      +  +  A   L        SP+  +    I    + G   EA
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              + ++   G+  +  T++S + G  K +R D    +++         +LI    LI  
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++ E GLV + T +N LI  F    +     +LL  M++    PD
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 269 NFTYEEVINGLC----------------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             T + +++GLC                KS+K L+A   FN     G  PD   Y  +I 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN-----GVEPDVQTYNILIS 519

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL   G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +  
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 579

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+ TLI G C  GR D+   LF EM ++GI  + ITY TLI G+ K G I
Sbjct: 580 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 23/340 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G   ++ T+N+ + G     R D   +L H++ E+G          LI  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
              G ++   +LL++++  GL P+    + L+   C+        E+   M    +    
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I+GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+ ++I+GYC+   +++   L  EM  +G     +TY 
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           TLI G    G  + A  +F+EM   G++ D IT   ++ G
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/317 (26%), Positives = 143/317 (45%), Gaps = 45/317 (14%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +E+A   FS +       S+  +   +   ++++R DLV  LY          D+     
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+ FC+  K+        ++ + GL P+   F  L+   C +       +  H M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  ++NGLC+  + +EA  + + + E G  P  + Y T++ G+CK G      
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 321 --------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                            DA+ ++ EM  KG+ P+ +TYNSMI G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C      +A++L +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 409 VITYNTLIQGYCKEGKI 425
            ITY+++I G+CK+ ++
Sbjct: 360 TITYSSMIDGFCKQNRL 376



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA--MDFLDST-GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ + + D   +      A  M +L +T G SPN  +    I   C +  I++ 
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ E G+     T+N+ + G   +   +    L  ++I SG          L+  
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F+ +  + + P+ V +TT+I+G CK 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ N  TY ++I G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 595 GRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
             ++ GL        A  + E++
Sbjct: 655 RNMLTGLWSKEELKRAVAMLEKL 677



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 84/189 (44%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 49  KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +  +I   C    L  A   + ++   GL P+  T+ +++HG C  D + EA
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEA 168

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                +M +       VT+ TL+ GLC  GR  EA  L + M + G+    ITY T++ G
Sbjct: 169 LDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 419 YCKEGKIVN 427
            CK+G  V+
Sbjct: 229 MCKKGDTVS 237



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIE 155
           H G  PD ++ + + D L +      A    DS G   FSPN  +    I   C++G ++
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
           +    F ++   G+  +  T+ + + G  K+   +    ++ ++I SG
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 152/306 (49%), Gaps = 14/306 (4%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L+S+ F+PN     + I    E GL+EEA   + K   M V  +++  N  L G +K  R
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYK---MDVLPAMQACNMVLDGLVKKGR 173

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D +WK+Y D++  G          LI   C  G   + + L  +++E  + P    +  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C +        +  TM      P+ +TY  +++G CK     +A  ++ ++   G
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDG 293

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            +P+ V +  +I GLCK   +  ARK   +M   G++PN + YN +I GYC+  NL EA 
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            LH E+          TY+ LI GLC   R +EA  L +EM +KG   + +TYNTLI GY
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 420 CKEGKI 425
           CKEG +
Sbjct: 414 CKEGNM 419



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 167/342 (48%), Gaps = 14/342 (4%)

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           W++      P + +CN++ D LV+   F    KV  D + + G SPN  +    I   C 
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMV-ARGASPNVVTYGTLIDGCCR 205

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----- 205
            G   +AF  F ++ E  +F ++  +   + G     R      ++  +  SG L     
Sbjct: 206 QGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 206 ----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
               +  +C    V +  EL +++L DGL+P    F  LI   C+        + L  M 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +    P+ F Y  +I+G CK+    EA  + +++++   +PD   Y+ +I GLC +  + 
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +  EM  KG LPN  TYN++I GYC+  N+E+A  +  +M +KG     +T++TLI
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G C  G+ + A  L+ EM  KG+  DV+ Y  LI G+ K+G
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP++V+   L D         +AF++  + ++   F P      + I+ LC    I E
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF-PTVVIYTILIRGLCGESRISE 246

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F  ++  G+  ++ T+N+ + G  KI       +LY +++  G L         I 
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILID 306

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   ++    + L  +   G+VP    +N LI  +C+  N      L   +      P
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP 366

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FTY  +I GLC   +  EA  +  ++K++G++P+ V Y T+I G CK G +  A ++ 
Sbjct: 367 DVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVC 426

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M  KG+ PN  T++++I GYC+   +E A  L+ EM+ KG     V Y  LI G    
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKD 486

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T EA+ L +EM + G+  +V T + LI G CK+G+I
Sbjct: 487 GNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRI 524



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 144/368 (39%), Gaps = 66/368 (17%)

Query: 101 GFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P++V+  +L D L      V AR F + M    S G  PN       I   C++G +
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA---SFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------- 205
            EA    S++++  +   + T++  + G   +DR +    L  ++ + G+L         
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTL 409

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C +G + +  E+  Q+ E G+ P    F+ LI  +C+         L   MV +  
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT--------------------- 304
            PD   Y  +I+G  K     EA+R+  +++E G  P+                      
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 305 ---------------------------VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                                      VMYT +I GLC  G +  A K + +M   GL P
Sbjct: 530 LFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRP 589

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +T   +I G+ R  +L +   L  ++L  G    +  Y  L  G    G    A    
Sbjct: 590 DVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCS 649

Query: 398 EEMAQKGI 405
           E+++  GI
Sbjct: 650 EDLSGIGI 657



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 92/192 (47%), Gaps = 3/192 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F  LI  F E    G V E L      +  P       V++GL K  +    ++V+ D+
Sbjct: 128 VFGVLIIAFSE---MGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
             RG  P+ V Y T+I G C+ G    A +++ EMI K + P    Y  +I G C    +
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRI 244

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA+ + + M + G      TYNT++ G C      +A  L++EM   G+  +V+T+  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGIL 304

Query: 416 IQGYCKEGKIVN 427
           I G CK  ++V+
Sbjct: 305 IDGLCKTDEMVS 316



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 125/296 (42%), Gaps = 31/296 (10%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + ++L   L      + A   L      GF PN  +    I   C+ G +E+A   
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCN 211
            S++ E G+  +I T+++ + G  K  + +    LY +++  G L         I     
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR------ 265
           DG   E + L +++ E GL P     + LI   C+    GR+S+ +   +A+        
Sbjct: 486 DGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKD---GRISDAIKLFLAKTGTDTTGS 542

Query: 266 ----------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
                     +P++  Y  +I GLC   +  +A + F+D++  G  PD      +I G  
Sbjct: 543 KTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHF 602

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           +   L D   +  +++  G++PN   Y  +  GY     L+ A R  +++   G G
Sbjct: 603 RAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSALRCSEDLSGIGIG 658


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 167/335 (49%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP++++ +VL D L +A     A++ L+S    G SP+  +  + +  LC+   +  A+ 
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWE 247

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFC 210
              ++ + G   ++ T+NS L G  +  R      L  D+         +  G LI   C
Sbjct: 248 VLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLC 307

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+V +   +L  +++ G  P+   +N LI+  C+         LL   V+    PD  
Sbjct: 308 KVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVV 367

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  VI GLC+S +  EA R+   +K RG  PD ++Y+T+I GLCK G + +A  ++  M
Sbjct: 368 TYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVM 427

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G   +  TY+++I G C+   ++EA  L   M+  G   +T+TYN+LI GLC     
Sbjct: 428 AGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHL 487

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           DEA  L EEM +       +TYN LI G C+  ++
Sbjct: 488 DEAIELVEEMERSNCAPSAVTYNILIHGMCRMERV 522



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/364 (29%), Positives = 175/364 (48%), Gaps = 20/364 (5%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFS 135
           L + N V  ++   + + +  G SPD+++  +L D L +    A A++V  + LD+ G  
Sbjct: 201 LCKANRVSQAVELLESMKAR-GCSPDVITYTILVDGLCKESKVAAAWEVLREMLDA-GCV 258

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    +  LC +  + +A      +   G   ++ T+ + + G  K+ R      +
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             D+I+ G          LI   C   +V E   LLR+ +  G+ P+   ++ +I   C 
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 378

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    LL  + +R   PD   Y  +I+GLCK+ K  EA+ ++  +   G   D V 
Sbjct: 379 SNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVT 438

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T+I GLCK G + +A  +   M+  G  P+  TYNS+I G C +++L+EA  L +EM 
Sbjct: 439 YSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEME 498

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE-----MAQKGIFRDVITYNTLIQGYCK 421
                 + VTYN LI G+C   R D A  L E+     +A  G   D I Y++LI G CK
Sbjct: 499 RSNCAPSAVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCK 558

Query: 422 EGKI 425
            G++
Sbjct: 559 AGRV 562



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 160/333 (48%), Gaps = 36/333 (10%)

Query: 103 SPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGF------SPNPNSLELYIQCLCESG 152
           SP +V+ N L D L       RA  +  + LD          SPN  +  + I  LC++ 
Sbjct: 146 SPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKAN 205

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
            + +A      +K  G    + T+                            L+   C +
Sbjct: 206 RVSQAVELLESMKARGCSPDVITYT--------------------------ILVDGLCKE 239

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            KV+  +E+LR++L+ G VP    +N L+   C  +       L+  M  R   P+  TY
Sbjct: 240 SKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+GLCK  +  +A  +  D+ ++G  PD ++Y  +I+GLCK   + ++  +    + 
Sbjct: 300 GTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVS 359

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G+ P+  TY+S+I+G CR + L+EA RL   +  +G     + Y+TLI GLC  G+ DE
Sbjct: 360 GGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDE 419

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A+ L+E MA  G   DV+TY+TLI G CK G++
Sbjct: 420 AFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRV 452



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 141/315 (44%), Gaps = 16/315 (5%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D + S    PN     + I  LC++    +A   F  ++  G+      + + L G  K 
Sbjct: 33  DEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKE 92

Query: 187 DRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            R D    + H++ + G          LI   C + +     EL   +      P    +
Sbjct: 93  KRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTY 152

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNR-------APDNFTYEEVINGLCKSRKRLEAYR 290
           N L+          R   L   M+ R         +P+  TY  +I+GLCK+ +  +A  
Sbjct: 153 NTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVE 212

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +   +K RG  PD + YT ++ GLCK   +  A ++  EM+  G +PN  TYNS++HG C
Sbjct: 213 LLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLC 272

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R   + +A  L ++M  +G     VTY TLI GLC  GR  +A  +  +M  KG   D++
Sbjct: 273 RARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLM 332

Query: 411 TYNTLIQGYCKEGKI 425
            YN LI G CK  ++
Sbjct: 333 IYNMLINGLCKADQV 347



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 73/236 (30%), Positives = 103/236 (43%), Gaps = 42/236 (17%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+   +  L+  FC      +       M ++N  P+ F    +I+GLCK+++ ++A R 
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC- 350
           F  ++  G V DTV+YT ++ GL K   L  A  +  EM   G  PN  TYNS+I G C 
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 351 ----------------------------------RIDNLEEAKRLHKEMLDKGYGE---- 372
                                             R   LE A  L +EMLD+   +    
Sbjct: 127 NNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDR 186

Query: 373 ---TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                +TY+ LI GLC   R  +A  L E M  +G   DVITY  L+ G CKE K+
Sbjct: 187 CSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKV 242



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 168/392 (42%), Gaps = 35/392 (8%)

Query: 40  YTEIAKQVCKITRTKPRWE--QTLLSD--IPSF-NFNDPLFFREFLKQQNNVLLSIRFFQ 94
           YT +   +CK ++    WE  + +L    +P+   +N  L      ++ ++ L  +R   
Sbjct: 229 YTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMT 288

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVA----MDFLDSTGFSPNPNSLELYIQCLCE 150
                 G +P++V+   L D L +    K A     D +D  G +P+     + I  LC+
Sbjct: 289 C----RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGG-TPDLMIYNMLINGLCK 343

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIE 201
           +  ++E+     +    G+   + T++S + G  + +R D   +L           D+I 
Sbjct: 344 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVIL 403

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLH 258
              LI   C  GKV E ++L   +  DG   +   ++ LI   C+    GRV E   LL 
Sbjct: 404 YSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKA---GRVDEAHLLLA 460

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            MV     P   TY  +I GLC      EA  +  +++     P  V Y  +IHG+C+M 
Sbjct: 461 RMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRME 520

Query: 319 WLGDARKMWFE-----MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            +  A  +  +     +   G   +   Y+S+I G C+   + EA    +EM+D G    
Sbjct: 521 RVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPD 580

Query: 374 TVTYNTLIAGLCLHGRTDEAYHL-FEEMAQKG 404
            +TY+ L+ GL       E  HL  ++M Q G
Sbjct: 581 HITYSILLEGLKKSKDLHELRHLVLDQMVQLG 612



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 133/288 (46%), Gaps = 18/288 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PDL+  N+L + L +A     ++  L    S G  P+  +    I  LC S  ++EA
Sbjct: 326 GGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEA 385

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 +K  G    +  +++ + G  K  + D  + LY          D++    LI  
Sbjct: 386 CRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDG 445

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V E + LL +++  G  P    +N LI   C+  +     EL+  M   N AP 
Sbjct: 446 LCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPS 505

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER-----GYVPDTVMYTTVIHGLCKMGWLGDA 323
             TY  +I+G+C+  +   A  +    K R     G   DT+ Y+++I GLCK G + +A
Sbjct: 506 AVTYNILIHGMCRMERVDSAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEA 565

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL-HKEMLDKGY 370
              + EMI  G++P+  TY+ ++ G  +  +L E + L   +M+  GY
Sbjct: 566 LDYFQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQLGY 613



 Score = 39.7 bits (91), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY  L+ G C  G  D+A   F+EM  K +  +V   + LI G CK  + ++
Sbjct: 11  TYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSID 62


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 167/350 (47%), Gaps = 35/350 (10%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFS 135
           NVL+     + L S Y      G  PD+V+ N L  +L  A   + A+  L+   S G +
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVA 213

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    +Q   E G IE A    +++ EMG   +  T N                  
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN------------------ 255

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  +C  G+V +    ++Q + DG  P+   +N  ++  C+  + G   +
Sbjct: 256 --------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           ++  MV     PD FTY  V+N LCK+ +  EA  + N + +RG +PD   + T+I  LC
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               L +A  +  ++  KG+ P+ YT+N +I+  C++ +   A RL +EM + G     V
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TYNTLI  LC  G+  +A  L ++M   G  R  ITYNT+I G CK+ +I
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD ++ N   + L +      A KV MD +   G  P+  +  + + CLC++G +EE
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKV-MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ + G    I T+N+ +      +R +    L   +   G          LI 
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G       L  ++   G  P+   +N LI   C     G+  +LL  M +     
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+GLCK  +  EA  VF+ +  +G   + + + T+I GLCK   + DA ++ 
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 519

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +GL PN  TYNS++  YC+  ++++A  + + M   G+    VTY TLI GLC  
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GRT  A  +   M  KG+      YN ++Q   +   I
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 156/338 (46%), Gaps = 33/338 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELY 144
           L++R F+ + +  G +PD V+ N L D+L        A+D L   +STG   +  +    
Sbjct: 409 LALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 467

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IEEA   F ++   G+  +  T+N+                          
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT-------------------------- 501

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C D K+ + +EL+ Q++ +GL P N  +N +++ +C++ +  + +++L TM A  
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK+ +   A +V   ++ +G  P    Y  V+  L +   + DA 
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++ EM   G  P+  TY  +  G CR    ++EA     EM+DKG+     ++  L  G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 681

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L   G  D      E + +K   R+  +  + I+GY K
Sbjct: 682 LLNLGMDDYFIRAIEIIMEKVDLRE--SDVSAIRGYLK 717



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 142/336 (42%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L  +L      + A+D    +   G SP+  +  + I  LC+ G    A
Sbjct: 351 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 410

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++K  G      T+N+ +     + +      L  D+  +G          +I  
Sbjct: 411 LRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+  Q+   G+      FN LI   C+ K      EL++ M++    P+
Sbjct: 471 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPN 530

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK G    A K+  
Sbjct: 531 NITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+ P    YN ++    R +N+ +A  L +EM + G     +TY  +  GLC  G
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650

Query: 389 -RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               EA+    EM  KG   +  ++  L +G    G
Sbjct: 651 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 11/303 (3%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG---VFGSIKTWNSALLGC-IKIDRT 189
           F+P P   E  I+ L   G ++      ++++  G     G + ++  +  G  +  D  
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 190 DLV-------WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           DL+       + +  D +   +L+       K+     +  ++   G+ P+   FN L+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C          +L  M +R  APD  T+  ++ G  +      A RV   + E G   
Sbjct: 190 ALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSA 249

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
             V    +I+G CK+G + DA     + I  G  P++ TYN+ ++G C+ D++  A ++ 
Sbjct: 250 TKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+ +G+     TYN ++  LC +G+ +EA  +  +M  +G   D+ T+NTLI   C  
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 423 GKI 425
            ++
Sbjct: 370 NRL 372


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 161/338 (47%), Gaps = 11/338 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  GF PD+V+ + L   L        A+D        PN  +    +  LC  G + EA
Sbjct: 139 TKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM-CRPNVVTFTTLMNGLCREGRVVEA 197

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
                ++ E G+  +  T+ + + G  KI  T     L   + E  ++          I 
Sbjct: 198 VALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIYSAIID 257

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               DG+ S+ + L  ++ E G+ P+   +N +I  FC    +     LL  M+ R   P
Sbjct: 258 GLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINP 317

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +IN   K RK  EA  +++++  RG +P+T+ Y ++I G CK   L  A  M+
Sbjct: 318 NVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMF 377

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           + M  KG  P+ +T+N++I GYC    +++   L  EM + G    T TYNTLI G CL 
Sbjct: 378 YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLV 437

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + A  L ++M   G+  D++T NTL+ G C  GK+
Sbjct: 438 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 475



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/353 (30%), Positives = 166/353 (47%), Gaps = 33/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL + N + D    +  +  A   L        +PN  +    I    +     EA
Sbjct: 279 GIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEA 338

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              + ++   G+  +  T+NS + G  K +R D    +++ +   G          LI  
Sbjct: 339 EELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDG 398

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++ E GLV + T +N LI  FC   +     +L   M++    PD
Sbjct: 399 YCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 458

Query: 269 NFTYEEVINGLC----------------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             T   +++GLC                KS+  L+A R FN     G  PD   Y  +I 
Sbjct: 459 IVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFN-----GVEPDVQTYNILIS 513

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL   G   +A +++ EM H+G++PN  TY+SMI+G C+   L+EA ++   M  K +  
Sbjct: 514 GLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 573

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+NTL++G C  GR D+   LF EM ++GI  D ITY TLI G+ K G I
Sbjct: 574 DVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNI 626



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-- 197
           S  + I+C C    +  A   F K+ ++G    + T+++ L G    DR      L+H  
Sbjct: 114 SFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM 173

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
              +++    L+   C +G+V E   LL +++EDGL P    +  ++   C+  +     
Sbjct: 174 CRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSAL 233

Query: 255 ELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            LL  M   +   P+   Y  +I+GL K  +  +A+ ++ +++E+G  PD   Y  +I G
Sbjct: 234 NLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDG 293

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            C  G   +A+++  EM+ + + PN  TY+++I+ Y +     EA+ L+ EML +G    
Sbjct: 294 FCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPN 353

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T+TYN++I G C   R D A H+F  MA KG   DV T+NTLI GYC   +I
Sbjct: 354 TITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRI 405



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 24/352 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLV-EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P++V+   L + L  E R  +    +D +   G  PN  +    +  +C+ G   
Sbjct: 171 HQMCRPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTV 230

Query: 156 EAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            A     K++EM  +  ++  +++ + G  K  R      LY ++ E G          +
Sbjct: 231 SALNLLRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCM 290

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC+ G+ SE   LL+++LE  + P    ++ LI+ + +++ F    EL   M+ R  
Sbjct: 291 IDGFCSSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGI 350

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +I+G CK  +   A  +F  +  +G  PD   + T+I G C    + D  +
Sbjct: 351 IPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTE 410

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM   GL+ +  TYN++IHG+C + +L  A  L ++M+  G     VT NTL+ GLC
Sbjct: 411 LLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLC 470

Query: 386 LHGRTDEAYHLFEEMAQK-----------GIFRDVITYNTLIQGYCKEGKIV 426
            +G+  +A  +F+ M +            G+  DV TYN LI G   EGK +
Sbjct: 471 DNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFL 522



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 163/341 (47%), Gaps = 29/341 (8%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            +P++V+ + L ++ V+ R F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 315 INPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDAAE 374

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G    + T+N+ + G     R D   +L H++ E+G          LI  F
Sbjct: 375 HMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGF 434

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--- 266
           C  G ++   +L +Q++  G+ P+    N L+   C+    G++ + L    A  ++   
Sbjct: 435 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDN---GKLKDALEMFKAMQKSKMD 491

Query: 267 -----------PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
                      PD  TY  +I+GL    K LEA  ++ ++  RG VP+T+ Y+++I+GLC
Sbjct: 492 LDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLC 551

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   L +A +M+  M  K   P+  T+N+++ GYC+   +++   L  EM  +G     +
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAI 611

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           TY TLI G    G  + A  +F+EM   G++ D IT  +++
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSML 652



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 146/313 (46%), Gaps = 41/313 (13%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +E+A   FS +       S+  +N  +   ++++R DLV  LY          D+     
Sbjct: 58  LEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNI 117

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF-------------- 250
           LI+ FC+  K+        ++ + G  P+   F+ L+   C +                 
Sbjct: 118 LIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQMCRPN 177

Query: 251 --------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                         GRV E   LL  MV     P+  TY  +++G+CK    + A  +  
Sbjct: 178 VVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLR 237

Query: 294 DLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            ++E  ++ P+ V+Y+ +I GL K G   DA  ++ EM  KG+ P+ +TYN MI G+C  
Sbjct: 238 KMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSS 297

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
               EA+RL +EML++      VTY+ LI       +  EA  L++EM  +GI  + ITY
Sbjct: 298 GRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITY 357

Query: 413 NTLIQGYCKEGKI 425
           N++I G+CK+ ++
Sbjct: 358 NSMIDGFCKQNRL 370



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/323 (23%), Positives = 146/323 (45%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ N + D   +      A      + + G SP+  +    I   C +  I++ 
Sbjct: 349 GIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDG 408

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ E G+     T+N+ + G   +   +    L   +I SG          L+  
Sbjct: 409 TELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 468

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL 
Sbjct: 469 LCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELY 528

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   P+  TY  +INGLCK  +  EA ++F+ +  + + PD V + T++ G CK 
Sbjct: 529 KEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKA 588

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ +  TY ++IHG+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 589 GRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITI 648

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
            +++  L        A  + E++
Sbjct: 649 RSMLTVLWSKEELKRAVAMLEDL 671



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 4/189 (2%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   MV     P    + +++  + +  +      ++  ++ +
Sbjct: 47  KLRSGFHEIKGLEDAIDLFSDMVRSRPLPSVIDFNKLMGVVVRMERPDLVISLYQKMERK 106

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +  +I   C    L  A   + ++   G  P+  T+++++HG C  D + EA
Sbjct: 107 QIPCDVYSFNILIKCFCSCSKLPFALSTFGKITKLGFQPDVVTFSTLLHGLCVEDRVSEA 166

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  +M         VT+ TL+ GLC  GR  EA  L + M + G+  + ITY T++ G
Sbjct: 167 LDLFHQMCRP----NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 222

Query: 419 YCKEGKIVN 427
            CK G  V+
Sbjct: 223 MCKIGDTVS 231



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 91/219 (41%), Gaps = 23/219 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----------LDST----GFSPNPNSLELYIQ 146
           G  PD+V+CN L D L +    K A++           LD++    G  P+  +  + I 
Sbjct: 454 GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILIS 513

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------- 197
            L   G   EA   + ++   G+  +  T++S + G  K  R D   +++          
Sbjct: 514 GLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 573

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    L+  +C  G+V +G EL  ++   G+V +   +  LI  F +  N     ++ 
Sbjct: 574 DVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIF 633

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M++    PD  T   ++  L    +   A  +  DL+
Sbjct: 634 QEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 152/306 (49%), Gaps = 14/306 (4%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L+S+ F+PN     + I    E GL+EEA   + K   M V  +++  N  L G +K  R
Sbjct: 119 LESSKFTPN--VFGVLIIAFSEMGLVEEALWVYYK---MDVLPAMQACNMVLDGLVKKGR 173

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D +WK+Y D++  G          LI   C  G   + + L  +++E  + P    +  
Sbjct: 174 FDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTI 233

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C +        +  TM      P+ +TY  +++G CK     +A  ++ ++   G
Sbjct: 234 LIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDG 293

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            +P+ V +  +I GLCK   +  ARK   +M   G++PN + YN +I GYC+  NL EA 
Sbjct: 294 LLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEAL 353

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            LH E+          TY+ LI GLC   R +EA  L +EM +KG   + +TYNTLI GY
Sbjct: 354 SLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGY 413

Query: 420 CKEGKI 425
           CKEG +
Sbjct: 414 CKEGNM 419



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/342 (29%), Positives = 166/342 (48%), Gaps = 14/342 (4%)

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           W++      P + +CN++ D LV+   F    KV  D + + G SPN  +    I   C 
Sbjct: 147 WVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDMV-ARGASPNVVTYGTLIDGCCR 205

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----- 205
            G   +AF  F ++ E  +F ++  +   + G     R      ++  +  SG L     
Sbjct: 206 QGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYT 265

Query: 206 ----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
               +  +C    V +  EL  ++L DGL+P    F  LI   C+        + L  M 
Sbjct: 266 YNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA 325

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +    P+ F Y  +I+G CK+    EA  + +++++   +PD   Y+ +I GLC +  + 
Sbjct: 326 SFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRME 385

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +  EM  KG LPN  TYN++I GYC+  N+E+A  +  +M +KG     +T++TLI
Sbjct: 386 EADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLI 445

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G C  G+ + A  L+ EM  KG+  DV+ Y  LI G+ K+G
Sbjct: 446 DGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDG 487



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP++V+   L D         +AF++  + ++   F P      + I+ LC    I E
Sbjct: 188 GASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIF-PTVVIYTILIRGLCGESRISE 246

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F  ++  G+  ++ T+N+ + G  KI       +LY +++  G L         I 
Sbjct: 247 AESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILID 306

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   ++    + L  +   G+VP    +N LI  +C+  N      L   +      P
Sbjct: 307 GLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILP 366

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FTY  +I GLC   +  EA  +  ++K++G++P+ V Y T+I G CK G +  A ++ 
Sbjct: 367 DVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVC 426

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M  KG+ PN  T++++I GYC+   +E A  L+ EM+ KG     V Y  LI G    
Sbjct: 427 SQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKD 486

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T EA+ L +EM + G+  +V T + LI G CK+G+I
Sbjct: 487 GNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRI 524



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 152/347 (43%), Gaps = 31/347 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L + N + D   +    K A++    +   G  PN  +  + I  LC++  +  A
Sbjct: 258 GMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSA 317

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 +   GV  +I  +N  + G  K         L+          D+     LI+ 
Sbjct: 318 RKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKG 377

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E   LL+++ + G +P    +N LI  +C++ N  +  E+   M  +   P+
Sbjct: 378 LCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPN 437

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+G CK+ K   A  ++ ++  +G +PD V YT +I G  K G   +A ++  
Sbjct: 438 IITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHK 497

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT-------------- 374
           EM   GL PN +T + +I G C+   + +A +L    L K   +TT              
Sbjct: 498 EMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKL---FLAKTGTDTTGSKTNELDRSLCSP 554

Query: 375 --VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             V Y  LI GLC  GR  +A   F +M   G+  DV T   +IQG+
Sbjct: 555 NHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGH 601



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 91/192 (47%), Gaps = 3/192 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F  LI  F E    G V E L      +  P       V++GL K  +    ++V+ D+
Sbjct: 128 VFGVLIIAFSE---MGLVEEALWVYYKMDVLPAMQACNMVLDGLVKKGRFDTMWKVYGDM 184

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
             RG  P+ V Y T+I G C+ G    A +++ EMI K + P    Y  +I G C    +
Sbjct: 185 VARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGESRI 244

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA+ + + M + G      TYNT++ G C      +A  L+ EM   G+  +V+T+  L
Sbjct: 245 SEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGIL 304

Query: 416 IQGYCKEGKIVN 427
           I G CK  ++V+
Sbjct: 305 IDGLCKTDEMVS 316



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 136/346 (39%), Gaps = 66/346 (19%)

Query: 101 GFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P++V+  +L D L      V AR F + M    S G  PN       I   C++G +
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMVSARKFLIDMA---SFGVVPNIFVYNCLIDGYCKAGNL 349

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------- 205
            EA    S++++  +   + T++  + G   +DR +    L  ++ + G+L         
Sbjct: 350 SEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTL 409

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C +G + +  E+  Q+ E G+ P    F+ LI  +C+         L   MV +  
Sbjct: 410 IDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT--------------------- 304
            PD   Y  +I+G  K     EA+R+  +++E G  P+                      
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 305 ---------------------------VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                                      VMYT +I GLC  G +  A K + +M   GL P
Sbjct: 530 LFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRP 589

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           + +T   +I G+ R  +L +   L  ++L  G    +  Y  L  G
Sbjct: 590 DVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKG 635



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 31/274 (11%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + ++L   L      + A   L      GF PN  +    I   C+ G +E+A   
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCN 211
            S++ E G+  +I T+++ + G  K  + +    LY +++  G L         I     
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR------ 265
           DG   E + L +++ E GL P     + LI   C+    GR+S+ +   +A+        
Sbjct: 486 DGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKD---GRISDAIKLFLAKTGTDTTGS 542

Query: 266 ----------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
                     +P++  Y  +I GLC   +  +A + F+D++  G  PD      +I G  
Sbjct: 543 KTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHF 602

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           +   L D   +  +++  G++PN   Y  +  GY
Sbjct: 603 RAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGY 636



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 52/248 (20%), Positives = 101/248 (40%), Gaps = 25/248 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+ V+ N L D   +    + A++    +   G  PN  +    I   C++G +E A
Sbjct: 398 GFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAA 457

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              ++++   G+   +  + + + G  K   T   ++L+ ++ E+G          LI  
Sbjct: 458 MGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDG 517

Query: 209 FCNDGKVSEGYELL------------RQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSE 255
            C DG++S+  +L                L+  L  P +  +  LI   C      + S+
Sbjct: 518 LCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASK 577

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
               M      PD FT   +I G  ++    +   +  D+ + G +P++ +Y  +  G  
Sbjct: 578 FFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYE 637

Query: 316 KMGWLGDA 323
           + G+L  A
Sbjct: 638 ESGYLKSA 645



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 139/347 (40%), Gaps = 51/347 (14%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVAMDFLDSTGF---------------SPNPNSLELY 144
           G  P++ + + L D L  + R       FL  TG                SPN       
Sbjct: 503 GLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTNELDRSLCSPNHVMYTAL 562

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           IQ LC  G I +A   FS ++  G+   + T    + G  +      V  L  D+++ G 
Sbjct: 563 IQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGI 622

Query: 205 LIQAFCNDGKVSEGYE---LLRQVLE---DGLVPENTAFNK------LISRF-----CEK 247
           +  +      +++GYE    L+  L    +G+ P +   ++      + SRF      EK
Sbjct: 623 IPNSSVYR-VLAKGYEESGYLKSALSFCGEGVQPLDRVNSEPWGSYTIRSRFQLCVVTEK 681

Query: 248 KN--------FGRVSELL----HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           K         FG  S +L    HT++ +  +P     +    G    ++  +A ++F  +
Sbjct: 682 KECHSSYLTAFGIHSFVLLWYFHTIL-KPPSPHEILKKVPFIGQKGDQRPNKALQLFRQM 740

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +     PD V  T  +     +G L     +   + H+GL  +    NS+I+ Y +   +
Sbjct: 741 QMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEI 800

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             A+RL     D    +   T+ ++I G  LHG+ +EA  LF EM +
Sbjct: 801 GTARRL----FDGTQKKDVTTWTSMIVGHALHGQAEEALQLFTEMKE 843


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 167/350 (47%), Gaps = 35/350 (10%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFS 135
           NVL+     + L S Y      G  PD+V+ N L  +L  A   + A+  L+   S G +
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    +Q   E G IE A    +++ EMG   +  T N                  
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN------------------ 255

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  +C  G+V +    ++Q + DG  P+   +N  ++  C+  + G   +
Sbjct: 256 --------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           ++  MV     PD FTY  V+N LCK+ +  EA  + N + +RG +PD   + T+I  LC
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               L +A  +  ++  KG+ P+ YT+N +I+  C++ +   A RL +EM + G     V
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TYNTLI  LC  G+  +A  L ++M   G  R  ITYNT+I G CK+ +I
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD ++ N   + L +      A KV MD +   G  P+  +  + + CLC++G +EE
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKV-MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ + G    I T+N+ +      +R +    L   +   G          LI 
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G       L  ++   G  P+   +N LI   C     G+  +LL  M +     
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+GLCK  +  EA  VF+ +  +G   + + + T+I GLCK   + DA ++ 
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 519

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +GL PN  TYNS++  YC+  ++++A  + + M   G+    VTY TLI GLC  
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GRT  A  +   M  KG+      YN ++Q   +   I
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 156/338 (46%), Gaps = 33/338 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELY 144
           L++R F+ + +  G +PD V+ N L D+L        A+D L   +STG   +  +    
Sbjct: 409 LALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 467

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IEEA   F ++   G+  +  T+N+                          
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT-------------------------- 501

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C D K+ + +EL+ Q++ +GL P N  +N +++ +C++ +  + +++L TM A  
Sbjct: 502 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK+ +   A +V   ++ +G  P    Y  V+  L +   + DA 
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++ EM   G  P+  TY  +  G CR    ++EA     EM+DKG+     ++  L  G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 681

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L   G  D      E + +K   R+  +  + I+GY K
Sbjct: 682 LLNLGMDDYFIRAIEIIMEKVDLRE--SDVSAIRGYLK 717



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 142/336 (42%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L  +L      + A+D    +   G SP+  +  + I  LC+ G    A
Sbjct: 351 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 410

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++K  G      T+N+ +     + +      L  D+  +G          +I  
Sbjct: 411 LRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+  Q+   G+      FN LI   C+ K      EL++ M++    P+
Sbjct: 471 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPN 530

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK G    A K+  
Sbjct: 531 NITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+ P    YN ++    R +N+ +A  L +EM + G     +TY  +  GLC  G
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650

Query: 389 -RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               EA+    EM  KG   +  ++  L +G    G
Sbjct: 651 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 11/303 (3%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG---VFGSIKTWNSALLGC-IKIDRT 189
           F+P P   E  I+ L   G ++      ++++  G     G + ++  +  G  +  D  
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 190 DLV-------WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           DL+       + +  D +   +L+       K+     +  ++   G+ P+   FN L+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C          +L  M +R  APD  T+  ++ G  +      A RV   + E G   
Sbjct: 190 ALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSA 249

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
             V    +I+G CK+G + DA     + I  G  P++ TYN+ ++G C+ D++  A ++ 
Sbjct: 250 TKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+ +G+     TYN ++  LC +G+ +EA  +  +M  +G   D+ T+NTLI   C  
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 423 GKI 425
            ++
Sbjct: 370 NRL 372


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 167/350 (47%), Gaps = 35/350 (10%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFS 135
           NVL+     + L S Y      G  PD+V+ N L  +L  A   + A+  L+   S G +
Sbjct: 62  NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 121

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    +Q   E G IE A    +++ EMG   +  T N                  
Sbjct: 122 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN------------------ 163

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  +C  G+V +    ++Q + DG  P+   +N  ++  C+  + G   +
Sbjct: 164 --------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 215

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           ++  MV     PD FTY  V+N LCK+ +  EA  + N + +RG +PD   + T+I  LC
Sbjct: 216 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 275

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               L +A  +  ++  KG+ P+ YT+N +I+  C++ +   A RL +EM + G     V
Sbjct: 276 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 335

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TYNTLI  LC  G+  +A  L ++M   G  R  ITYNT+I G CK+ +I
Sbjct: 336 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 385



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 157/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD ++ N   + L +      A KV MD +   G  P+  +  + + CLC++G +EE
Sbjct: 189 GFEPDQITYNTFVNGLCQNDHVGHALKV-MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 247

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ + G    I T+N+ +      +R +    L   +   G          LI 
Sbjct: 248 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 307

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G       L  ++   G  P+   +N LI   C     G+  +LL  M +     
Sbjct: 308 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 367

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+GLCK  +  EA  VF+ +  +G   + + + T+I GLCK   + DA ++ 
Sbjct: 368 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELI 427

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +GL PN  TYNS++  YC+  ++++A  + + M   G+    VTY TLI GLC  
Sbjct: 428 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 487

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GRT  A  +   M  KG+      YN ++Q   +   I
Sbjct: 488 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 525



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 156/338 (46%), Gaps = 33/338 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELY 144
           L++R F+ + +  G +PD V+ N L D+L        A+D L   +STG   +  +    
Sbjct: 317 LALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 375

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IEEA   F ++   G+  +  T+N+                          
Sbjct: 376 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT-------------------------- 409

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C D K+ + +EL+ Q++ +GL P N  +N +++ +C++ +  + +++L TM A  
Sbjct: 410 LIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 469

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK+ +   A +V   ++ +G  P    Y  V+  L +   + DA 
Sbjct: 470 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 529

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++ EM   G  P+  TY  +  G CR    ++EA     EM+DKG+     ++  L  G
Sbjct: 530 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 589

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L   G  D      E + +K   R+  +  + I+GY K
Sbjct: 590 LLNLGMDDYFIRAIEIIMEKVDLRE--SDVSAIRGYLK 625



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 142/336 (42%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L  +L      + A+D    +   G SP+  +  + I  LC+ G    A
Sbjct: 259 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 318

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++K  G      T+N+ +     + +      L  D+  +G          +I  
Sbjct: 319 LRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 378

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+  Q+   G+      FN LI   C+ K      EL++ M++    P+
Sbjct: 379 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMISEGLQPN 438

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK G    A K+  
Sbjct: 439 NITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLR 498

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+ P    YN ++    R +N+ +A  L +EM + G     +TY  +  GLC  G
Sbjct: 499 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 558

Query: 389 -RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               EA+    EM  KG   +  ++  L +G    G
Sbjct: 559 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 594



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 97/197 (49%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+  +   +N L++   E      +  +   M AR   PD  T+  ++  LC++ +   A
Sbjct: 49  GIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTA 108

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +  ++  RG  PD   +TT++ G  + G +  A ++   M+  G    + T N +I+G
Sbjct: 109 VLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLING 168

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC++  +E+A    ++ +  G+    +TYNT + GLC +     A  + + M Q+G   D
Sbjct: 169 YCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPD 228

Query: 409 VITYNTLIQGYCKEGKI 425
           V TYN ++   CK G++
Sbjct: 229 VFTYNIVVNCLCKNGQL 245


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 152/296 (51%), Gaps = 10/296 (3%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F KL ++G+   + T+N+ L G    DR      L+H +
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 200 IES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            E+           L+   C +G++ E   LL +++EDGL P    +  ++   C+K + 
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 251 GRVSELLHTM-VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                LL  M    +  P+   Y  +I+ LCK  +  +A  +F +++E+G  PD   Y +
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C  G   DA ++  EM+ + + P+  TYN++I+ + +     EA+ L+ EML +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+TY+++I G C   R D A H+F  MA KG   ++IT+NTLI GYC   +I
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 168/341 (49%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSL-VEARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+ N L   L VE R  +    F  +  T   PN  +    +  LC  G I
Sbjct: 141 TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKID---------RTDLVWKLYHDLIESGY 204
            EA     ++ E G+  +  T+ + + G C K D         + + V  +  +++    
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I + C DG+ S+   L  ++ E G+ P+   +N +I  FC    +    +LL  M+ R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  +IN   K  K  EA  +++++  RG +P+T+ Y+++I G CK   L  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M++ M  KG  PN  T+N++I GYC    +++   L  EM + G    T TYNTLI G 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L G  + A  L +EM   G+  D++T +TL+ G C  GK+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 165/353 (46%), Gaps = 33/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL + N +      +  +  A   L        SP+  +    I    + G   EA
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              + ++   G+  +  T++S + G  K +R D    +++         +LI    LI  
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++ E GLV + T +N LI  F    +     +LL  M++    PD
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 269 NFTYEEVINGLC----------------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             T + +++GLC                KS+K L+A   FN     G  PD   Y  +I 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN-----GVEPDVQTYNILIS 519

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL   G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +  
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 579

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+ TLI G C  GR D+   LF EM ++GI  + ITY TLI G+ K G I
Sbjct: 580 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 23/340 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G   ++ T+N+ + G     R D   +L H++ E+G          LI  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
              G ++   +LL++++  GL P+    + L+   C+        E+   M    +    
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I+GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+ ++I+GYC+   +++   L  EM  +G     +TY 
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           TLI G    G  + A  +F+EM   G++ D IT   ++ G
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 144/317 (45%), Gaps = 45/317 (14%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +E+A   FS +       S+  +   +   ++++R DLV  LY          D+     
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+ FC+  K+        ++ + GL P+   FN L+   C +        L H M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  ++NGLC+  + +EA  + + + E G  P  + Y T++ G+CK G      
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 321 --------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                            DA+ ++ EM  KG+ P+ +TYNSMI G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C      +A++L +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 409 VITYNTLIQGYCKEGKI 425
            ITY+++I G+CK+ ++
Sbjct: 360 TITYSSMIDGFCKQNRL 376



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA--MDFLDST-GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ + + D   +      A  M +L +T G SPN  +    I   C +  I++ 
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ E G+     T+N+ + G   +   +    L  ++I SG          L+  
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F+ +  + + P+ V +TT+I+G CK 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ N  TY ++I G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 595 GRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
             ++ GL        A  + E++
Sbjct: 655 RNMLTGLWSKEELKRAVAMLEKL 677



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 87/189 (46%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 49  KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +T +I   C    L  A   + ++   GL P+  T+N+++HG C  D + EA
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEA 168

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  +M +       VT+ TL+ GLC  GR  EA  L + M + G+    ITY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 419 YCKEGKIVN 427
            CK+G  V+
Sbjct: 229 MCKKGDTVS 237



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIE 155
           H G  PD ++ + + D L +      A    DS G   FSPN  +    I   C++G ++
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
           +    F ++   G+  +  T+ + + G  K+   +    ++ ++I SG
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646


>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
 gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Cucumis sativus]
          Length = 783

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 115/419 (27%), Positives = 189/419 (45%), Gaps = 84/419 (20%)

Query: 93  FQWLH--SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQC 147
             W++  S +G  PD VS N + D+L++ R  + A D L    S G SPN ++  + +  
Sbjct: 233 LDWVNKMSEFGCVPDTVSYNTILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCG 292

Query: 148 LCESGLIEEA-------------------------FCAFSKLKE----------MGVFGS 172
            C  GL++EA                         FC   K+ E          M V   
Sbjct: 293 YCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPD 352

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
           + T+N+ + GC +   +  V+ L  ++ + G          +++  C  G ++E    L 
Sbjct: 353 VVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLD 412

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++ E+GL P+   +N LI  +C+    G+   ++  M ++    D +T   +++ LC  +
Sbjct: 413 KMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCVEK 472

Query: 284 KRLEAYRV-----------------------------------FNDLKERGYVPDTVMYT 308
           K  EAY +                                   ++++KER  +P T+ Y 
Sbjct: 473 KLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYN 532

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           +VI GLC+   +  A     EM+  GL+P+E TYN +IHG+C   N+E+A + H EM++ 
Sbjct: 533 SVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIEN 592

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +     T N L+ GLC  G  ++A  LF  +  KG   DV+TYNT+I   CKEGK  N
Sbjct: 593 LFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFEN 651



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/210 (33%), Positives = 110/210 (52%), Gaps = 4/210 (1%)

Query: 221 LLRQVLED----GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           L RQVL+D    G+VP   +FN LI  +C +       + ++ M      PD  +Y  ++
Sbjct: 196 LARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMSEFGCVPDTVSYNTIL 255

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           + L K R   EA  +  D+K +G  P+   Y  ++ G C++G L +A K+   M    LL
Sbjct: 256 DALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLVCGYCRLGLLKEATKVIEIMTRNNLL 315

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P  +TYN +++G+C    ++EA R+  EM         VTYNTLI G      + E Y L
Sbjct: 316 PTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMNVLPDVVTYNTLIDGCSQWRDSSEVYSL 375

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            EEM +KG+  + +TYN +++  CK+G + 
Sbjct: 376 IEEMDKKGVKCNAVTYNIILKWMCKKGNMT 405



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 143/352 (40%), Gaps = 47/352 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D   + R        ++ +D  G   N  +  + ++ +C+ G + EA   
Sbjct: 351 PDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTT 410

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K++E G+     T+N+ +    K  +    +++  ++   G          ++   C 
Sbjct: 411 LDKMEENGLSPDCVTYNTLIGAYCKAGKMGKAFRMMDEMTSKGLKIDTWTLNTILHCLCV 470

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + K+ E Y LL    + G + +  ++  LI  + + +   R   L   M  R   P   T
Sbjct: 471 EKKLDEAYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTIT 530

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG------------------ 313
           Y  VI GLC+SRK  +A    N++ E G VPD   Y  +IHG                  
Sbjct: 531 YNSVIGGLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMI 590

Query: 314 -----------------LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                            LC+ G L  A K++  ++ KG   +  TYN++I   C+    E
Sbjct: 591 ENLFKPDVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFE 650

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            A  L  EM  K  G    TY  +IA L   GR  EA     +M + GI  D
Sbjct: 651 NAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHD 702



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 157/372 (42%), Gaps = 61/372 (16%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SPD V+ N L  +  +A    +AF++ MD + S G   +  +L   + CLC    ++E
Sbjct: 418 GLSPDCVTYNTLIGAYCKAGKMGKAFRM-MDEMTSKGLKIDTWTLNTILHCLCVEKKLDE 476

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQ 207
           A+       + G      ++   +LG  K ++ D    L+ ++         I    +I 
Sbjct: 477 AYNLLCSASKRGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIG 536

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN------------------ 249
             C   KV +  + L ++LE+GLVP+ T +N +I  FC + N                  
Sbjct: 537 GLCQSRKVDQAIDKLNEMLENGLVPDETTYNIIIHGFCLEGNVEKAFQFHNEMIENLFKP 596

Query: 250 -----------------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
                              +  +L +T+V++ +  D  TY  +I+ LCK  K   AY + 
Sbjct: 597 DVYTCNILLRGLCREGMLEKALKLFNTLVSKGKDIDVVTYNTIISSLCKEGKFENAYDLL 656

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            +++ +   PD   Y  +I  L   G + +A +   +M+  G++ ++             
Sbjct: 657 TEMEAKKLGPDQYTYKVIIAALTDAGRIKEAEEFTLKMVESGIVHDQNL----------- 705

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             L + + +    + + +   ++ Y+  I  LC   +  +A HLF E+ ++G+  +  TY
Sbjct: 706 -KLGKGQNVLTSEVSEHFDFKSIAYSDQINELCNQHKYKDAMHLFVEVTKEGVALNKYTY 764

Query: 413 NTLIQGYCKEGK 424
             L++G  K  K
Sbjct: 765 LNLMEGLIKRRK 776


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 167/350 (47%), Gaps = 35/350 (10%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFS 135
           NVL+     + L S Y      G  PD+V+ N L  +L  A   + A+  L+   S G +
Sbjct: 154 NVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVA 213

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    +Q   E G IE A    +++ EMG   +  T N                  
Sbjct: 214 PDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVN------------------ 255

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  +C  G+V +    ++Q + DG  P+   +N  ++  C+  + G   +
Sbjct: 256 --------VLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALK 307

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           ++  MV     PD FTY  V+N LCK+ +  EA  + N + +RG +PD   + T+I  LC
Sbjct: 308 VMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALC 367

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               L +A  +  ++  KG+ P+ YT+N +I+  C++ +   A RL +EM + G     V
Sbjct: 368 TGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEV 427

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TYNTLI  LC  G+  +A  L ++M   G  R  ITYNT+I G CK+ +I
Sbjct: 428 TYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDGLCKKMRI 477



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 156/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD ++ N   + L +      A KV MD +   G  P+  +  + + CLC++G +EE
Sbjct: 281 GFEPDQITYNTFVNGLCQNDHVGHALKV-MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 339

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ + G    I T+N+ +      +R +    L   +   G          LI 
Sbjct: 340 AKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILIN 399

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G       L  ++   G  P+   +N LI   C     G+  +LL  M +     
Sbjct: 400 ALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPR 459

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+GLCK  +  EA  VF+ +  +G   + + + T+I GLCK   + DA  + 
Sbjct: 460 STITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLI 519

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +GL PN  TYNS++  YC+  ++++A  + + M   G+    VTY TLI GLC  
Sbjct: 520 NQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKA 579

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GRT  A  +   M  KG+      YN ++Q   +   I
Sbjct: 580 GRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNI 617



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 155/338 (45%), Gaps = 33/338 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELY 144
           L++R F+ + +  G +PD V+ N L D+L        A+D L   +STG   +  +    
Sbjct: 409 LALRLFEEMKNS-GCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTI 467

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IEEA   F ++   G+  +  T+N+                          
Sbjct: 468 IDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNT-------------------------- 501

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C D K+ + + L+ Q++ +GL P N  +N +++ +C++ +  + +++L TM A  
Sbjct: 502 LIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANG 561

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK+ +   A +V   ++ +G  P    Y  V+  L +   + DA 
Sbjct: 562 FEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDAL 621

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++ EM   G  P+  TY  +  G CR    ++EA     EM+DKG+     ++  L  G
Sbjct: 622 SLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEG 681

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L   G  D      E + +K   R+  +  + I+GY K
Sbjct: 682 LLNLGMDDYFIRAIEIIMEKVDLRE--SDVSAIRGYLK 717



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 141/336 (41%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L  +L      + A+D    +   G SP+  +  + I  LC+ G    A
Sbjct: 351 GCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVGDPHLA 410

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++K  G      T+N+ +     + +      L  D+  +G          +I  
Sbjct: 411 LRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITYNTIIDG 470

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+  Q+   G+      FN LI   C+ K       L++ M++    P+
Sbjct: 471 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMISEGLQPN 530

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK G    A K+  
Sbjct: 531 NITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQVALKVLR 590

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+ P    YN ++    R +N+ +A  L +EM + G     +TY  +  GLC  G
Sbjct: 591 GMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVGEPPDALTYKIVFRGLCRGG 650

Query: 389 -RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               EA+    EM  KG   +  ++  L +G    G
Sbjct: 651 GPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLG 686



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/303 (23%), Positives = 135/303 (44%), Gaps = 11/303 (3%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG---VFGSIKTWNSALLGC-IKIDRT 189
           F+P P   E  I+ L   G ++      ++++  G     G + ++  +  G  +  D  
Sbjct: 70  FAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQVKLGVVHSFLDSYEGQQLFDDAV 129

Query: 190 DLV-------WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           DL+       + +  D +   +L+       K+     +  ++   G+ P+   FN L+ 
Sbjct: 130 DLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMK 189

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C          +L  M +R  APD  T+  ++ G  +      A RV   + E G   
Sbjct: 190 ALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSA 249

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
             V    +I+G CK+G + DA     + I  G  P++ TYN+ ++G C+ D++  A ++ 
Sbjct: 250 TKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVM 309

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+ +G+     TYN ++  LC +G+ +EA  +  +M  +G   D+ T+NTLI   C  
Sbjct: 310 DVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTG 369

Query: 423 GKI 425
            ++
Sbjct: 370 NRL 372


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V    L   + + + F V +   +     G SP   +  + + C+C S     A C 
Sbjct: 80  PSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCF 139

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G    + T+ S L G    +R +    L+  ++  G+         LI   C 
Sbjct: 140 LGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCK 199

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +  ++   E+  Q+ ++G+ P    +N L+S  CE   +   + LL  M+ R   P+  T
Sbjct: 200 NRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVIT 259

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+   K  K +EA  ++  + +    PD   YT +I+GLC  G L +AR+M++ M 
Sbjct: 260 FTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLME 319

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  PNE TY ++IHG+C+   +E+  ++  EM  KG    T+TY  LI G CL GR D
Sbjct: 320 SNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPD 379

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  +F +M  +    D+ TYN L+ G C  G +
Sbjct: 380 VAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYV 413



 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 159/328 (48%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PDLV+   L          + A+   D     GF PN  +    I CLC++  +  A
Sbjct: 147 GFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHA 206

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F+++ + G+  ++ T+NS                          L+   C  G+ S+
Sbjct: 207 VEIFNQMGDNGIRPNVVTYNS--------------------------LVSGLCEIGRWSD 240

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LLR +++ G+ P    F  LI  F +        EL   M+  +  PD FTY  +IN
Sbjct: 241 AAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALIN 300

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC   +  EA ++F  ++  GY P+ V YTT+IHG CK   + D  K+++EM  KGL+ 
Sbjct: 301 GLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKGLVA 360

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY  +I GYC +   + A+ +  +M  +       TYN L+ GLC +G  ++A  +F
Sbjct: 361 NTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYVEKALMIF 420

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + M ++ +  +++TY  +IQG CK GK+
Sbjct: 421 KYMRKREMDINIVTYTIIIQGMCKVGKV 448



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------LIESGYLI 206
           EA   F+++       SI  +   L    K+ R D+V  L+           L     ++
Sbjct: 65  EALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNIVM 124

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C   +       L ++++ G  P+   F  L+  FC          L   +V     
Sbjct: 125 NCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMGFR 184

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I+ LCK+R    A  +FN + + G  P+ V Y +++ GLC++G   DA  +
Sbjct: 185 PNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLVSGLCEIGRWSDAAWL 244

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+ +G+ PN  T+ ++I  + ++  + EAK L+K M+         TY  LI GLC 
Sbjct: 245 LRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTALINGLCT 304

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +GR DEA  +F  M   G + + +TY TLI G+CK  ++
Sbjct: 305 YGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRV 343



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 10/233 (4%)

Query: 204 YLIQAFCNDGKV----------SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           + I+AF N  K+          +E  +L  +++    +P    F +L+S   + K F  V
Sbjct: 42  FWIRAFSNYRKILRNGLHNLQFNEALDLFTRMVHSRPLPSIVDFTRLLSVIAKMKRFDVV 101

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L   M     +P  +T   V+N +C+S +   A      + + G+ PD V +T+++HG
Sbjct: 102 ISLFEQMQILGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHG 161

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            C    + DA  ++ +++  G  PN  TY ++IH  C+  +L  A  +  +M D G    
Sbjct: 162 FCHWNRIEDALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPN 221

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            VTYN+L++GLC  GR  +A  L  +M ++GI  +VIT+  LI  + K GKI+
Sbjct: 222 VVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIM 274



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 133/282 (47%), Gaps = 12/282 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L   L E   +  A   L      G  PN  +    I    + G I EA
Sbjct: 217 GIRPNVVTYNSLVSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEA 276

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              +  + +M V+  + T+ + + G     R D   ++++ +  +GY         LI  
Sbjct: 277 KELYKVMIQMSVYPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHG 336

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   +V +G ++  ++ + GLV     +  LI  +C         E+ + M +R   PD
Sbjct: 337 FCKSKRVEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPD 396

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLC +    +A  +F  +++R    + V YT +I G+CK+G + DA  ++ 
Sbjct: 397 IRTYNVLLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFC 456

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
            +  KG+ PN  TY +MI G+CR   + EA  L K+M + G+
Sbjct: 457 SLFSKGMKPNVITYTTMISGFCRRGFIHEADALFKKMKEDGF 498



 Score = 45.1 bits (105), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 12/151 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLI 154
           S  G   + ++  VL           VA +  +  G    P  +  Y   +  LC +G +
Sbjct: 354 SQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNVLLDGLCYNGYV 413

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E+A   F  +++  +  +I T+   + G  K+ + +  + L+  L   G          +
Sbjct: 414 EKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTM 473

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           I  FC  G + E   L +++ EDG +P  + 
Sbjct: 474 ISGFCRRGFIHEADALFKKMKEDGFLPNESV 504


>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 105/377 (27%), Positives = 177/377 (46%), Gaps = 47/377 (12%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESG 152
           L ++ G  P L +CN L  SLV+A   K++    D +   G +P+       +   C  G
Sbjct: 152 LLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGG 211

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESG 203
            +++A   F K++++GV  ++ T+N+ + G  K  R D  +         ++   L+  G
Sbjct: 212 RVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYG 271

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI       +  E   +L+++ + G  P N  +N LI  +C   N     ++   M++ 
Sbjct: 272 VLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISN 331

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH----------- 312
             +P++ T   +I G CKS +   A  +  ++   G V +   +T+VIH           
Sbjct: 332 GISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKCRFDSA 391

Query: 313 ------------------------GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                   GLC+ G   +A ++W+ ++ KG   N  T N++IHG
Sbjct: 392 LLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHG 451

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C   + EEA +L KEML++G    +++YNTLI   C  G+ +E + L EEM ++GI  D
Sbjct: 452 LCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPD 511

Query: 409 VITYNTLIQGYCKEGKI 425
           + TYN L+ G C  GKI
Sbjct: 512 MYTYNMLLHGLCNMGKI 528



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 147/302 (48%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF+ N  +    I  LCE+G  EEA     ++ E G+     ++N+ +L C K  + +  
Sbjct: 437 GFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEG 496

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           +KL  +++  G          L+   CN GK+ E   L  +  ++G  P+   +  +I  
Sbjct: 497 FKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDG 556

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+        +L   MV      +   Y  +I   C++    EA+R+ +D++ RG    
Sbjct: 557 YCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQT 616

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           +  Y+++IHGL  +G +  A ++  EM  +GL PN   Y ++I GYC++  + +   + +
Sbjct: 617 SATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQ 676

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM         +TY  +I G C  G    A  L  EMAQKGI  D +TYN L  G+CKEG
Sbjct: 677 EMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEG 736

Query: 424 KI 425
           K+
Sbjct: 737 KM 738



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 166/376 (44%), Gaps = 49/376 (13%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G++P+ V  N L D          A+   D   S G SPN  +    IQ  C+S  +
Sbjct: 294 SDRGYAPNNVVYNTLIDGYCRIGNISTALQIRDDMISNGISPNSVTCNSLIQGYCKSNQM 353

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY--------- 204
           E A     ++   G   +  T+ S +   C+K  R D       +++   +         
Sbjct: 354 EHAEHLLEEMLTGGGVINQGTFTSVIHRLCLKC-RFDSALLFIMEMLLRNFKPNDGLLTL 412

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +GK SE  EL  ++LE G        N LI   CE  +    ++LL  M+ R 
Sbjct: 413 LVSGLCQNGKQSEAIELWYRLLEKGFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERG 472

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D+ +Y  +I   CK  K  E +++  ++  RG  PD   Y  ++HGLC MG + +A 
Sbjct: 473 LVLDSISYNTLILACCKEGKVEEGFKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAG 532

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML------------------ 366
            +W E    G  P+ YTY  MI GYC+ + +EE ++L +EM+                  
Sbjct: 533 GLWHECKKNGNFPDAYTYGIMIDGYCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAY 592

Query: 367 -----------------DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
                             +G  +T+ TY++LI GL   G  D A  L +EM ++G+  +V
Sbjct: 593 CENGNMREAFRLRDDMRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNV 652

Query: 410 ITYNTLIQGYCKEGKI 425
           + Y  LI GYCK G++
Sbjct: 653 VCYTALIGGYCKLGQM 668



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 155/333 (46%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF+ + V+ N L   L EA + + A   L      G   +  S    I   C+ G +EE 
Sbjct: 437 GFAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLVLDSISYNTLILACCKEGKVEEG 496

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
           F    ++   G+   + T+N  L G   + + +    L+H         D    G +I  
Sbjct: 497 FKLKEEMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDG 556

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   +V EG +L ++++   +      +  LI  +CE  N      L   M +R     
Sbjct: 557 YCKANRVEEGEKLFQEMVTMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQT 616

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GL        A ++ +++++ G  P+ V YT +I G CK+G +     +  
Sbjct: 617 SATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQ 676

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    + PN+ TY  MI+G+C++ N++ A +L  EM  KG     VTYN L  G C  G
Sbjct: 677 EMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAVTYNALTNGFCKEG 736

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           + +EA  + + M+  GI  D ITY TLI G+ K
Sbjct: 737 KMEEALKVCDLMSTGGISLDDITYTTLIDGWHK 769



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 142/311 (45%), Gaps = 44/311 (14%)

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F  FS L   G+F S+KT N  L   +K +   + ++++  +   G          ++ 
Sbjct: 146 VFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVN 205

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AFC  G+V +  EL R++ + G+ P    +N +I   C+        +    M      P
Sbjct: 206 AFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKP 265

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +INGL K  +  EA  +  ++ +RGY P+ V+Y T+I G C++G +  A ++ 
Sbjct: 266 SLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIR 325

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT-------- 379
            +MI  G+ PN  T NS+I GYC+ + +E A+ L +EML  G      T+ +        
Sbjct: 326 DDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSVIHRLCLK 385

Query: 380 ---------------------------LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
                                      L++GLC +G+  EA  L+  + +KG   + +T 
Sbjct: 386 CRFDSALLFIMEMLLRNFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKGFAANTVTS 445

Query: 413 NTLIQGYCKEG 423
           N LI G C+ G
Sbjct: 446 NALIHGLCEAG 456



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/207 (30%), Positives = 104/207 (50%)

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           +EL   +   GL P     N L+S   +        ++   M      PD + +  ++N 
Sbjct: 147 FELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNA 206

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            C   +  +A  +F  +++ G  P+ V Y  +IHGLCK G L +A +   +M  + + P+
Sbjct: 207 FCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPS 266

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TY  +I+G  +++  +EA  + KEM D+GY    V YNTLI G C  G    A  + +
Sbjct: 267 LVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRD 326

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +M   GI  + +T N+LIQGYCK  ++
Sbjct: 327 DMISNGISPNSVTCNSLIQGYCKSNQM 353



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 59/176 (33%), Positives = 98/176 (55%)

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
           FG V EL   +  +   P   T   +++ L K+ +   +Y+VF+ +   G  PD  +++T
Sbjct: 143 FGVVFELFSLLANKGLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFST 202

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +++  C  G + DA +++ +M   G+ PN  TYN++IHG C+   L+EA +  ++M  + 
Sbjct: 203 MVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKER 262

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + VTY  LI GL    R DEA  + +EM+ +G   + + YNTLI GYC+ G I
Sbjct: 263 VKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNI 318


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 161/335 (48%), Gaps = 44/335 (13%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
             NP   +L ++   ++  + E   AF  LK  G+  SI   NS L G +K+   DL W+
Sbjct: 24  GSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWE 83

Query: 195 LYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +Y +++ SG          +I A C + K+      L  + E G+ P+   +N LI+ +C
Sbjct: 84  IYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYC 143

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL------------------- 286
            +       EL+ +M  +   P  FTY  +INGLCK+ K L                   
Sbjct: 144 RQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTA 203

Query: 287 ----------------EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
                           +A R+F+++  +G VPD V ++ +I  L K G L  A K + +M
Sbjct: 204 TYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDM 263

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
            + GL P+   Y  +I G+CR   + EA ++  EML++G     VTYNT++ GLC     
Sbjct: 264 KNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKML 323

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA  LF EM ++G+F D  T+ TLI GY K+G +
Sbjct: 324 SEADELFTEMTERGVFPDFYTFTTLINGYSKDGNM 358



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 166/338 (49%), Gaps = 14/338 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G  P + + N + + L +   +  A   LD     G SP+  +  + +   C +  +
Sbjct: 159 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 218

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESGY--------- 204
            +A   F ++   GV   + ++ SAL+G + K    D   K + D+  +G          
Sbjct: 219 MDAERIFDEMPSQGVVPDLVSF-SALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTI 277

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC +G +SE  ++  ++LE G V +   +N +++  C++K      EL   M  R 
Sbjct: 278 LIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERG 337

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD +T+  +ING  K     +A  +F  + +R   PD V Y T+I G CK   +    
Sbjct: 338 VFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVN 397

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++W +MI + + PN  +Y  +I+GYC +  + EA RL  EM++KG+  T +T NT++ G 
Sbjct: 398 ELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGY 457

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           C  G   +A      M  KGI  D ITYNTLI G+ KE
Sbjct: 458 CRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKE 495



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 163/347 (46%), Gaps = 30/347 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           + +N++ + R F  + S  G  PDLVS + L   L +      A+ +   + + G +P+ 
Sbjct: 214 RNDNMMDAERIFDEMPSQ-GVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN 272

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
               + I   C +G++ EA     ++ E G    + T+N+ L G                
Sbjct: 273 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNG---------------- 316

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                      C +  +SE  EL  ++ E G+ P+   F  LI+ + +  N  +   L  
Sbjct: 317 ----------LCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 366

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ RN  PD  TY  +I+G CK  +  +   ++ND+  R   P+ + Y  +I+G C MG
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 426

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +A ++W EM+ KG      T N+++ GYCR  N  +A      ML KG     +TYN
Sbjct: 427 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYN 486

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G       D A+ L  +M   G+  DVITYN ++ G+ ++G++
Sbjct: 487 TLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRM 533



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L ++       + A + +DS    G  P   +    I  LC++G    A
Sbjct: 127 GVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRA 186

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ ++G+     T+N  L+ C + D      +++          DL+    LI  
Sbjct: 187 KGVLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGL 246

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G + +  +  R +   GL P+N  +  LI  FC         ++   M+ +    D
Sbjct: 247 LSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLD 306

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCK +   EA  +F ++ ERG  PD   +TT+I+G  K G +  A  ++ 
Sbjct: 307 VVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFE 366

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI + L P+  TYN++I G+C+   +E+   L  +M+ +      ++Y  LI G C  G
Sbjct: 367 MMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMG 426

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              EA+ L++EM +KG    +IT NT+++GYC+ G  V
Sbjct: 427 CVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAV 464



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 136/282 (48%), Gaps = 12/282 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+ N + + L + +    A +    +   G  P+  +    I    + G + +A
Sbjct: 302 GCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKA 361

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F  + +  +   + T+N+ + G  K    + V +L++D+I           G LI  
Sbjct: 362 VTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILING 421

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN G VSE + L  +++E G        N ++  +C   N  +  E L  M+ +   PD
Sbjct: 422 YCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPD 481

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING  K      A+ + N ++  G +PD + Y  +++G  + G + +A  +  
Sbjct: 482 GITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFSRQGRMQEAELIML 541

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +MI +G+ P+  TY S+I+G+   +NL+EA R+H EML +G+
Sbjct: 542 KMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGF 583



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 92/180 (51%), Gaps = 3/180 (1%)

Query: 247 KKNFGRVSELLHTMVAR--NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           K    RV E++ ++V    N   +   ++ ++    ++RK  E    F  LK +G     
Sbjct: 4   KSGVSRV-EIVESLVLTYGNCGSNPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSI 62

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
               +++ GL K+GW+  A +++ E++  G+  N YT N MI+  C+   +E  K    +
Sbjct: 63  NACNSLLGGLVKVGWVDLAWEIYQEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSD 122

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M +KG     VTYNTLI   C  G  +EA+ L + M+ KG+   V TYN +I G CK GK
Sbjct: 123 MEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGK 182



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 60/241 (24%), Positives = 105/241 (43%), Gaps = 29/241 (12%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+V+ N L D   +    +   +    + S    PN  S  + I   C  G + EAF
Sbjct: 373 LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAF 432

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             + ++ E G   +I T N+                          +++ +C  G   + 
Sbjct: 433 RLWDEMVEKGFEATIITCNT--------------------------IVKGYCRAGNAVKA 466

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            E L  +L  G+VP+   +N LI+ F +++N  R   L++ M      PD  TY  ++NG
Sbjct: 467 DEFLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNG 526

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             +  +  EA  +   + ERG  PD   YT++I+G      L +A ++  EM+ +G +P+
Sbjct: 527 FSRQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586

Query: 339 E 339
           +
Sbjct: 587 D 587



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F+ L+  + + +      E    + ++           ++ GL K      A+ ++ ++
Sbjct: 29  VFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIYQEV 88

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
              G   +      +I+ LCK   + + +    +M  KG+ P+  TYN++I+ YCR   L
Sbjct: 89  VRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLL 148

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           EEA  L   M  KG      TYN +I GLC  G+   A  + +EM + G+  D  TYN L
Sbjct: 149 EEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 208

Query: 416 IQGYCKEGKIVN 427
           +   C+   +++
Sbjct: 209 LVECCRNDNMMD 220



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 43/90 (47%)

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N   ++ ++  Y +   L E     + +  KG   +    N+L+ GL   G  D A+ ++
Sbjct: 26  NPLVFDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +E+ + G+  +V T N +I   CK  KI N
Sbjct: 86  QEVVRSGVQVNVYTLNIMINALCKNQKIEN 115


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 104/343 (30%), Positives = 168/343 (48%), Gaps = 19/343 (5%)

Query: 104 PDLVSCNVLFDSLVE----ARAFKVAMDFLD-STGFSPNPNSLELYIQCLCESGLIEEAF 158
           P++++ N   D L +    A A ++     D S   SP+  +    I  LC+ G I+EA 
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G   ++ T+N+ + G  K D+ +    +   +++ G          L+ AF
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 261

Query: 210 CNDGKVSEGYELLRQVLEDG-----LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           C   +V E  ELL  +   G     LVP+   FN LI+  C+  NF + S L   MVA+N
Sbjct: 262 CKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN 321

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +I+GLCK+ +   A  + + +   G  P+ V Y  ++HGLCK G + +A 
Sbjct: 322 LQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEAC 381

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +   EM+  G +P+  TY S+++  CR    ++A +L  E+   G+   TVTYN L+ GL
Sbjct: 382 QFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGL 441

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              G+T++A  + EEM  KG   D  T+     G  + G +  
Sbjct: 442 WKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAG 484



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 171/370 (46%), Gaps = 23/370 (6%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GF 134
           + L +  +   ++  F+   +  G +P +V+ N + + L ++      M+  +     G 
Sbjct: 9   QSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGH 68

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            P+  +    I  LC++G +EEA      +   G   ++ T++  + G  K+ R D   +
Sbjct: 69  HPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARE 128

Query: 195 LYHDL-----------IESGYLIQAFCNDGKVSEGYELLRQVLEDG---LVPENTAFNKL 240
           L  ++           I     +   C     +E  EL+R  L DG   + P+   F+ L
Sbjct: 129 LIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGSLRVSPDTVTFSTL 187

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I   C+         +   M+A    P+  TY  ++NGLCK+ K   A+ +   + ++G 
Sbjct: 188 IDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGV 247

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-----LLPNEYTYNSMIHGYCRIDNL 355
            PD + Y+ ++   CK   + +A ++   M  +G     L+P++ T+N +I G C+  N 
Sbjct: 248 TPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNF 307

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           E+A  L +EM+ K      +T+  LI GLC  G+ + A  + + M   G+  +V+TYN L
Sbjct: 308 EQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNAL 367

Query: 416 IQGYCKEGKI 425
           + G CK G+I
Sbjct: 368 VHGLCKSGRI 377



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 84/226 (37%), Positives = 126/226 (55%), Gaps = 5/226 (2%)

Query: 205 LIQAFCNDGKVSEGYELLR-QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           ++Q+ C  G  +   E+ R ++  DG+ P    +N +I+  C+  + G   EL   +V R
Sbjct: 7   VLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVER 66

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  TY  +I+ LCK+    EA R+  D+  RG VP+ V Y+ +I+GLCK+G + +A
Sbjct: 67  GHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEA 126

Query: 324 RKMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG--YGETTVTYNT 379
           R++  EM  K   +LPN  TYNS + G C+     EA  L + + D        TVT++T
Sbjct: 127 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 186

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC  G+ DEA  +F++M   G   +VITYN L+ G CK  K+
Sbjct: 187 LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 232



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 148/300 (49%), Gaps = 19/300 (6%)

Query: 143 LYIQCLCESGLIEEAFCAF-SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           + +Q LC +G    A   F  ++   GV  +I T+N+ + G  K +      +L+ +L+E
Sbjct: 6   IVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVE 65

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+         LI + C  G + E   L   +   G VP    ++ LI+  C+      
Sbjct: 66  RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDE 125

Query: 253 VSELLHTMVAR--NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--YVPDTVMYT 308
             EL+  M  +  +  P+  TY   ++GLCK     EA  +   L++      PDTV ++
Sbjct: 126 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 185

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I GLCK G + +A  ++ +MI  G +PN  TYN++++G C+ D +E A  + + M+DK
Sbjct: 186 TLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDK 245

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG-----IFRDVITYNTLIQGYCKEG 423
           G     +TY+ L+   C   R DEA  L   MA +G     +  D +T+N LI G CK G
Sbjct: 246 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAG 305



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 161/338 (47%), Gaps = 22/338 (6%)

Query: 110 NVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           N++  SL  A    RA ++    +   G +P   +    I  LC+S  +      F +L 
Sbjct: 5   NIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELV 64

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVS 216
           E G    + T+N+ +    K    +   +L+ D+   G          LI   C  G++ 
Sbjct: 65  ERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRID 124

Query: 217 EGYELLRQVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTY 272
           E  EL++++      ++P    +N  +   C++       EL+ ++   +   +PD  T+
Sbjct: 125 EARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTF 184

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+GLCK  +  EA  VF+D+   GYVP+ + Y  +++GLCK   +  A  M   M+ 
Sbjct: 185 STLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVD 244

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT-----VTYNTLIAGLCLH 387
           KG+ P+  TY+ ++  +C+   ++EA  L   M  +G          VT+N LIAG C  
Sbjct: 245 KGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKA 304

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  ++A  LFEEM  K +  DV+T+  LI G CK G++
Sbjct: 305 GNFEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 342



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 90/154 (58%), Gaps = 3/154 (1%)

Query: 272 YEEVINGLCKSRKRLEAYRVF-NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           Y  V+  LC++     A  +F  ++   G  P  V Y T+I+GLCK   LG   +++ E+
Sbjct: 4   YNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEEL 63

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G  P+  TYN++I   C+  +LEEA+RLH +M  +G     VTY+ LI GLC  GR 
Sbjct: 64  VERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRI 123

Query: 391 DEAYHLFEEMAQKG--IFRDVITYNTLIQGYCKE 422
           DEA  L +EM +K   +  ++ITYN+ + G CK+
Sbjct: 124 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ 157



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/316 (23%), Positives = 143/316 (45%), Gaps = 17/316 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++++ N L + L +A   + A   ++S    G +P+  +  + +   C++  ++EA
Sbjct: 211 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 270

Query: 158 FCAFSKLKEMGVFGSI-----KTWNSALLGCIKIDRTDLVWKLYHDLIES---------G 203
                 +   G   ++      T+N  + G  K    +    L+ +++           G
Sbjct: 271 LELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNLQPDVMTFG 330

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C  G+V    ++L  +   G+ P    +N L+   C+        + L  MV+ 
Sbjct: 331 ALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSS 390

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD+ TY  ++  LC++ +  +A ++ ++LK  G+ PDTV Y  ++ GL K G    A
Sbjct: 391 GCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQA 450

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +  EM+ KG  P+ +T+ +   G  R  NL     L + +L KG      T ++++  
Sbjct: 451 ITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELLRVVLAKGMLPDATTCSSILDW 510

Query: 384 LCLHGRTDEAYHLFEE 399
           +C  G+ D+   + +E
Sbjct: 511 VCRSGKLDDVKAMIKE 526


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 152/296 (51%), Gaps = 10/296 (3%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F K+ ++G+   + T+N+ L G    DR      L+H +
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 200 IES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            E+           L+   C +G++ E   LL +++EDGL P    +  ++   C+K + 
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 251 GRVSELLHTM-VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                LL  M    +  P+   Y  +I+ LCK  +  +A  +F +++E+G  PD   Y +
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C  G   DA ++  EM+ + + P+  TYN++I+ + +     EA+ L+ EML +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+TY+++I G C   R D A H+F  MA KG   ++IT+NTLI GYC   +I
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 168/341 (49%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSL-VEARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+ N L   L VE R  +    F  +  T   PN  +    +  LC  G I
Sbjct: 141 TKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKID---------RTDLVWKLYHDLIESGY 204
            EA     ++ E G+  +  T+ + + G C K D         + + V  +  +++    
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I + C DG+ S+   L  ++ E G+ P+   +N +I  FC    +    +LL  M+ R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  +IN   K  K  EA  +++++  RG +P+T+ Y+++I G CK   L  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M++ M  KG  PN  T+N++I GYC    +++   L  EM + G    T TYNTLI G 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L G  + A  L +EM   G+  D++T +TL+ G C  GK+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 165/353 (46%), Gaps = 33/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL + N +      +  +  A   L        SP+  +    I    + G   EA
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              + ++   G+  +  T++S + G  K +R D    +++         +LI    LI  
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++ E GLV + T +N LI  F    +     +LL  M++    PD
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 269 NFTYEEVINGLC----------------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             T + +++GLC                KS+K L+A   FN     G  PD   Y  +I 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN-----GVEPDVQTYNILIS 519

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL   G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +  
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 579

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+ TLI G C  GR D+   LF EM ++GI  + ITY TLI G+ K G I
Sbjct: 580 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 23/340 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G   ++ T+N+ + G     R D   +L H++ E+G          LI  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
              G ++   +LL++++  GL P+    + L+   C+        E+   M    +    
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I+GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+ ++I+GYC+   +++   L  EM  +G     +TY 
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           TLI G    G  + A  +F+EM   G++ D IT   ++ G
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 144/317 (45%), Gaps = 45/317 (14%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +E+A   FS +       S+  +   +   ++++R DLV  LY          D+     
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+ FC+  K+        ++ + GL P+   FN L+   C +        L H M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  ++NGLC+  + +EA  + + + E G  P  + Y T++ G+CK G      
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 321 --------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                            DA+ ++ EM  KG+ P+ +TYNSMI G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C      +A++L +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 409 VITYNTLIQGYCKEGKI 425
            ITY+++I G+CK+ ++
Sbjct: 360 TITYSSMIDGFCKQNRL 376



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA--MDFLDST-GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ + + D   +      A  M +L +T G SPN  +    I   C +  I++ 
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ E G+     T+N+ + G   +   +    L  ++I SG          L+  
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F+ +  + + P+ V +TT+I+G CK 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ N  TY ++I G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 595 GRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
             ++ GL        A  + E++
Sbjct: 655 RNMLTGLWSKEELKRAVAMLEKL 677



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 87/189 (46%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 49  KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +T +I   C    L  A   + ++   GL P+  T+N+++HG C  D + EA
Sbjct: 109 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEA 168

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  +M +       VT+ TL+ GLC  GR  EA  L + M + G+    ITY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 419 YCKEGKIVN 427
            CK+G  V+
Sbjct: 229 MCKKGDTVS 237



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIE 155
           H G  PD ++ + + D L +      A    DS G   FSPN  +    I   C++G ++
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
           +    F ++   G+  +  T+ + + G  K+   +    ++ ++I SG
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 168/348 (48%), Gaps = 11/348 (3%)

Query: 89   SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELYIQC 147
            ++ FF W  S  G++ D  +CN L  +L+  +  K A+  + +    SPN  +  + I  
Sbjct: 827  ALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYRNKLCCSPNMFTFTILIHG 886

Query: 148  LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
            LC +G I  A+    ++   GV  ++   N  + G     + D   +L+ ++ ESG    
Sbjct: 887  LCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPP 946

Query: 204  ------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                   ++ +    GKV +   L+  ++  G  P    ++ L+   C+       + LL
Sbjct: 947  DVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALL 1006

Query: 258  HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
              M     +P+  TY  +I+G CK  +  EAY +  ++ + G  P+ V YT ++   CK 
Sbjct: 1007 QRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKC 1066

Query: 318  GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
            G   DA  +   M+ KG +PN +TYNS++  +C+ D +E A +L   M+ KG     V+Y
Sbjct: 1067 GKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 1126

Query: 378  NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            NT+IAGLC   +  E   L E+M       D++T+NT+I   CK  ++
Sbjct: 1127 NTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRV 1174



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 167/348 (47%), Gaps = 11/348 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++ FF+W  +  G+  ++  CN L + LV+A  +  A D   S     +  +  +    I
Sbjct: 109 ALVFFEWAETRDGYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLI 168

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYH------- 197
                +G I  A+  F ++   G+        S L G C     +D V            
Sbjct: 169 SGFIRAGKILPAYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKTCPP 228

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D +    +I       ++ +   LL +++++G  P   ++N ++  FC+         LL
Sbjct: 229 DSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLL 288

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             MV R   PD  +Y  VINGLCK  +  EA RV + + +RG  P+ + Y T++ G C++
Sbjct: 289 EQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRV 348

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G L  A ++  +M  +G  PN  TYN+++H +CR +++E A ++ + M+  G     + Y
Sbjct: 349 GDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINY 408

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +T+I+G C  G+  EA+ L E+M ++G   DV   +TLI   CK   I
Sbjct: 409 STIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAI 456



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 160/333 (48%), Gaps = 13/333 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
            G  P++V+  VL D+  +    + A+  ++     G+ PN  +    +   C+   +E A
Sbjct: 1048 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERA 1107

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYLIQA 208
                S + + G   ++ ++N+ + G  K  +           L      D++    +I A
Sbjct: 1108 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 1167

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-AP 267
             C   +V   YEL   + E G  P    +N L+   C+ + F +   LL  M  +   +P
Sbjct: 1168 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 1227

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            D  TY  VI+GLCKS++   AY++F  +   G  PD V Y+ VI  LCK  ++ +A  + 
Sbjct: 1228 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVL 1287

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              M+  G  P   TY ++I G+C+  NL++A  + + +L KG     VT++  I  L   
Sbjct: 1288 ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 1347

Query: 388  GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            GR  +A  L E M + G+  D +TYNTL++G+C
Sbjct: 1348 GRLRQAGELLETMLRAGLVPDTVTYNTLLKGFC 1380



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+VS   + + L +      A   MD +   G  PN  +    +   C  G ++ A
Sbjct: 295 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGA 354

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                K+ E G   +  T+N+ +    + +  +   ++   +I++G          +I  
Sbjct: 355 VELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISG 414

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ E ++LL Q++  G  P+    + LI   C+        ELL   +  + APD
Sbjct: 415 FCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPD 474

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+ LCK+++  EA    + + +    PD V Y +V+ GLCK   + DA  ++ 
Sbjct: 475 VVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFD 534

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G++P+  TY+ +IH +C+ +NL+ A ++ + M +       VTY+ LI GLC  G
Sbjct: 535 RMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAG 594

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D+A+ +F+EM   G   +++TYNTLI G CK  K+
Sbjct: 595 TVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKV 631



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 165/341 (48%), Gaps = 13/341 (3%)

Query: 98   SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
            +  G SP++V+ N + D   +      A   L+     G  PN  +  + +   C+ G  
Sbjct: 1010 TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA 1069

Query: 155  EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            E+A      + E G   ++ T+NS L    K D  +   +L   +I+ G          +
Sbjct: 1070 EDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 1129

Query: 206  IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
            I   C   KV EG  LL Q+L +  VP+   FN +I   C+        EL + +     
Sbjct: 1130 IAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGC 1189

Query: 266  APDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +++GLCKSR+  +A  +  ++ +++G  PD + Y TVI GLCK   +  A 
Sbjct: 1190 TPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAY 1249

Query: 325  KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            K++ +M+  GL P++ TY+ +I   C+   ++EA  + + ML  G+    +TY TLI G 
Sbjct: 1250 KLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 1309

Query: 385  CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  G  D+A  + + +  KG + DV+T++  I    K G++
Sbjct: 1310 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 1350



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 150/337 (44%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++++   L D          A++    +   G+ PN  +    +   C    +E A
Sbjct: 330 GCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERA 389

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + + G       +++ + G  K  +      L   +I  G          LI A
Sbjct: 390 HQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDA 449

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    +    ELLR  +     P+  A++ LI   C+ K        L  MV     PD
Sbjct: 450 LCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPD 509

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  V++GLCKSR+  +A+ +F+ ++  G +PD V Y+ VIH  CK   L  A KM  
Sbjct: 510 VVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLE 569

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M     +P+  TY+++I+G C+   +++A  + +EML  G     VTYNTLI GLC   
Sbjct: 570 RMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKIN 629

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  + E M ++    D ITY  LI G C   ++
Sbjct: 630 KVEQAAEMLEIMRKQSCTPDSITYTCLINGLCNASRL 666



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 162/341 (47%), Gaps = 30/341 (8%)

Query: 89   SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
            ++  F+ +       PD+ + + + DSLV++     A   ++   S G SPN  +    +
Sbjct: 931  ALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLL 990

Query: 146  QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
              LC++G ++EA     ++   G   +I T+N+                          +
Sbjct: 991  HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT--------------------------I 1024

Query: 206  IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
            I   C  G++ E Y LL ++++ G  P    +  L+  FC+         L+  MV +  
Sbjct: 1025 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 1084

Query: 266  APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             P+ FTY  +++  CK  +   A ++ + + ++G VP+ V Y TVI GLCK   + +   
Sbjct: 1085 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 1144

Query: 326  MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            +  +M+    +P+  T+N++I   C+   ++ A  L   + + G     VTYN+L+ GLC
Sbjct: 1145 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 1204

Query: 386  LHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
               R D+A +L  EM +K G   D+ITYNT+I G CK  ++
Sbjct: 1205 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRV 1245



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 139/303 (45%), Gaps = 29/303 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD-STGF--SPNPNSLELYIQCLCESGLIEEA 157
           G  PD+   + L D+L +A A   A + L  S G   +P+  +  + I  LC++  + EA
Sbjct: 435 GCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEA 494

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                           ++W   ++            + Y D++    ++   C   ++++
Sbjct: 495 ----------------ESWLDVMVK----------NRCYPDVVTYNSVVDGLCKSRRIND 528

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            + L  ++   G++P+   ++ +I  FC+  N     ++L  M      PD  TY  +IN
Sbjct: 529 AFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALIN 588

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK+    +A+ VF ++   G  P+ V Y T+I GLCK+  +  A +M   M  +   P
Sbjct: 589 GLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTP 648

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  +I+G C    LEEA R+ +EM DKG     +TY TL+  L      +    L 
Sbjct: 649 DSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLL 708

Query: 398 EEM 400
           +EM
Sbjct: 709 KEM 711



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 15/309 (4%)

Query: 91   RFFQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
            R  Q L S    G  P++VS N +   L +A      +  L+   S    P+  +    I
Sbjct: 1106 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 1165

Query: 146  QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
              +C++  ++ A+  F+ ++E G   ++ T+NS + G  K  R D    L          
Sbjct: 1166 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGC 1225

Query: 198  --DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
              D+I    +I   C   +V   Y+L  Q+L DGL P++  ++ +IS  C+ +     + 
Sbjct: 1226 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANN 1285

Query: 256  LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
            +L  M+     P   TY  +I+G CK+    +A  +   L  +G  PD V ++  I  L 
Sbjct: 1286 VLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLS 1345

Query: 316  KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            K G L  A ++   M+  GL+P+  TYN+++ G+C     E+A  L + M   G      
Sbjct: 1346 KRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNA 1405

Query: 376  TYNTLIAGL 384
            TY TL+  L
Sbjct: 1406 TYTTLVGHL 1414



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 82/153 (53%), Gaps = 1/153 (0%)

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           ++N L K+ +  +A+ +F    E  +  DTV Y+T+I G  + G +  A +++ EM  KG
Sbjct: 132 LLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPAYELFDEMNRKG 191

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L  +   + S++ G C      +A  LH   + K     +VTYNT+I GL    R D+A 
Sbjct: 192 LKAHAGVHKSILRGLCDAGQCSDAV-LHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAI 250

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L EEM   G   +V +YNT++ G+CK  ++ N
Sbjct: 251 RLLEEMVDNGFAPNVFSYNTVLHGFCKANRVEN 283



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 78/174 (44%), Gaps = 12/174 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ +++  S  +      A   L+        P+  +    I  LC++G +++A
Sbjct: 540 GVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKA 599

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
           F  F ++   G   ++ T+N+ + G  KI++ +   ++           D I    LI  
Sbjct: 600 FDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTCLING 659

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
            CN  ++ E + +LR++ + G +P+   +  L+    +  N   V +LL  M A
Sbjct: 660 LCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 65/323 (20%), Positives = 129/323 (39%), Gaps = 36/323 (11%)

Query: 92   FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
            F Q L    G +PD V+ +++  SL + R    A + L+     GF P   +    I   
Sbjct: 1252 FLQMLSD--GLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 1309

Query: 149  CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
            C++G +++A      L   G +  + T++  +    K  R     +L   ++ +G     
Sbjct: 1310 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDT 1369

Query: 205  -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 L++ FC+     +  +L   + + G  P+N  +  L+    +KK++    + L  
Sbjct: 1370 VTYNTLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSY----KDLLA 1425

Query: 260  MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
             V+++     F     ++   ++   +EA              D  +   ++    K G 
Sbjct: 1426 EVSKSMVDTGFKLNHELSSKLEASIEVEA--------------DVRLGCAIVDMFGKCGS 1471

Query: 320  LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              DARK++  M  +    N   +++M+  Y      E+A  L + M  +G     VT+ +
Sbjct: 1472 PQDARKVFEGMDQR----NVVLWSAMLGVYVFHKQEEQAFGLWRVMGLEGVEPDAVTFLS 1527

Query: 380  LIAGLCLHGRTDEAYHLFEEMAQ 402
            L+   C  G  D A   F  +++
Sbjct: 1528 LLTMCCHAGLLDAAVDEFVSISR 1550


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 168/351 (47%), Gaps = 15/351 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVL----FDSLVEARAFKVAMDFLDSTGFSPNPNSLELY 144
           +I  F  L S  G SP + +  +L    F     A AF +    L S G+ PN  +    
Sbjct: 74  AISLFTQLQSK-GISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNLVTFNTI 131

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C +G+I +A      L   G      T+ + + G  K  +      L  ++ +S  
Sbjct: 132 INGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSV 191

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C DG VS+   L  Q+ E G++ +   +N LI   C    +  V++
Sbjct: 192 QPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQ 251

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV  N  PD++T+  +I+ LCK  + LEA  V   + +RG  PD V Y  ++ G C
Sbjct: 252 LLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYC 311

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               + +AR+++  M+ +GL P+   YN +I GYC+   ++EA  L KE+ +K    T  
Sbjct: 312 SRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIA 371

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +YN+LI GLC  GR      L +EM       DV+TYN LI   CKEG+I+
Sbjct: 372 SYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRIL 422



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 166/372 (44%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+  D  +   L + L +    K A+  L   + +   PN       I  LC+ G + +A
Sbjct: 155 GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDA 214

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR----TDLVWKLYHDLIES-----GYLIQA 208
               S++ E G+     T+NS + GC  + R    T L+ K+  + ++        LI A
Sbjct: 215 LGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDA 274

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G++ E   +L  + + G  P+   +N L+  +C ++N     EL + MV R   PD
Sbjct: 275 LCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPD 334

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+G CK++   EA  +F +L  +  VP    Y ++I GLC  G +   +K+  
Sbjct: 335 VLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLD 394

Query: 329 EM-----------------------------------IHKGLLPNEYTYNSMIHGYCRID 353
           EM                                   + KG+ PN  TYN+M+ GYC  +
Sbjct: 395 EMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRN 454

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           N+  AK +   M+  G     + YN LI G C     DEA  LF+EM  K +  D+ +YN
Sbjct: 455 NVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYN 514

Query: 414 TLIQGYCKEGKI 425
           +LI G C  G+I
Sbjct: 515 SLIDGLCNLGRI 526



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 151/333 (45%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D V+ N L D       ++     L         P+  +  + I  LC+ G I EA
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               + + + G    I T+N+ + G    +      +L++ +++ G          LI  
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C    V E   L +++    LVP   ++N LI   C       V +LL  M    + PD
Sbjct: 345 YCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+ LCK  + LEA  V   + ++G  P+ V Y  ++ G C    +  A+ ++ 
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  GL P+   YN +I+GYC+ + ++EA  L KEM  K       +YN+LI GLC  G
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           R      L +EM   G   DVITYN L+  +CK
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCK 557



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 155/340 (45%), Gaps = 13/340 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESG 152
           + S  G  PD+V+ N L +          A +  +     G  P+  +  + I   C++ 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESG 203
           +++EA   F +L    +  +I ++NS + G     R   V KL           D++   
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI A C +G++ E   +L  +++ G+ P    +N ++  +C + N     ++ + MV  
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD   Y  +ING CK+    EA  +F +++ +  +PD   Y ++I GLC +G +   
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++  EM   G  P+  TYN ++  +C+    ++A  L +++++ G      T + ++  
Sbjct: 530 QELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDN 588

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           LC   +   A    + +   G   +V TY  LI   CK+G
Sbjct: 589 LCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDG 628



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 106/222 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A    G       L  Q+   G+ P    F  LI+ +  + +      LL T++   
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSG 120

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  T+  +ING C +    +A     +L  +GY+ D   Y T+I+GL K G +  A 
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM    + PN   Y+++I G C+   + +A  L  ++ ++G     VTYN+LI G 
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGC 240

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  GR  E   L  +M ++ +  D  T+N LI   CKEG+I+
Sbjct: 241 CSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 118/272 (43%), Gaps = 30/272 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N + D         VA D  +    +G  P+  +  + I   C++ +++EA
Sbjct: 435 GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEA 494

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++   +   I ++NS                          LI   CN G++  
Sbjct: 495 IVLFKEMRHKNLIPDIASYNS--------------------------LIDGLCNLGRIPH 528

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             ELL ++ + G  P+   +N L+  FC+ + F +   L   +V     PD +T   +++
Sbjct: 529 VQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVD 587

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK  K   A      L   G  P+   YT +I+ LCK G  G+A  +  +M      P
Sbjct: 588 NLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPP 647

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +  T+  +I    + +  ++A++L +EM+ +G
Sbjct: 648 DAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 93/193 (48%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P  + F+KL+       ++     L   + ++  +P   T+  +IN          A+ +
Sbjct: 53  PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + GY P+ V + T+I+G C  G +  A      ++ +G L +++TY ++I+G  +
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              ++ A  L +EM         V Y+ LI GLC  G   +A  L  ++ ++GI  D +T
Sbjct: 173 NGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVT 232

Query: 412 YNTLIQGYCKEGK 424
           YN+LI G C  G+
Sbjct: 233 YNSLIDGCCSVGR 245



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%)

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C  +N        + MV     P    +++++  + +      A  +F  L+ +G  P  
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             +T +I+          A  +   ++  G  PN  T+N++I+G+C    + +A    + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +L +GY     TY TLI GL  +G+   A HL +EM +  +  +++ Y+ LI G CK+G
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDG 209



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%)

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C+ R   +A   FN +      P T ++  ++  + +MG    A  ++ ++  KG+ P+ 
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T+  +I+ Y    +   A  L   +L  GY    VT+NT+I G C++G   +A    + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  +G   D  TY TLI G  K G+I
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQI 176



 Score = 45.1 bits (105), Expect = 0.068,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 49/114 (42%)

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           H  C+   + DA   +  M+     P    ++ ++    R+ +   A  L  ++  KG  
Sbjct: 28  HKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS 87

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  T+  LI        T  A+ L   + + G   +++T+NT+I G+C  G I
Sbjct: 88  PSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMI 141


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/333 (31%), Positives = 161/333 (48%), Gaps = 12/333 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+ + N+L  +L +A   + A   M+ + S G SP+  +    +Q   E G ++ A    
Sbjct: 202 DVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIK 261

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
            ++ E G   +  T N  + G  K  R D       + +  G+         L+   C  
Sbjct: 262 EQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKI 321

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G      E++  +L  GL P+   +N LIS  C+        ++L  MV+R+ +P+  TY
Sbjct: 322 GHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTY 381

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+ LCK  +  EA  +   L  +G +PD   + ++I GLC       A  ++ EM  
Sbjct: 382 NAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKG 441

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KG  P+E+TYN +I   C    LEEA  L KEM   G     V YNTLI G C + R +E
Sbjct: 442 KGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEE 501

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A  +F+EM  +G+ RD +TYNTLI G CK  ++
Sbjct: 502 AEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRV 534



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 188/399 (47%), Gaps = 19/399 (4%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLK---QQNNVLLSIRFFQWLHS 98
           + K +CK  + +P     ++ ++PS+  + D   F   ++   +  N+  ++R  + +  
Sbjct: 209 LIKALCKAHQVRPAI--LMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQM-V 265

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
            YG     V+ NVL +   +      A+ F+    S GF P+  +    +  LC+ G  +
Sbjct: 266 EYGCPCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAK 325

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLI 206
            A      +   G+   I T+NS + G  K+   +   K+   ++             +I
Sbjct: 326 HAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAII 385

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C + +V E  E+ R +   G++P+   FN LI   C   N     +L   M  +   
Sbjct: 386 SSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCR 445

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD FTY  +I+ LC SRK  EA  +  +++  G   + V+Y T+I G CK   + +A ++
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEI 505

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM  +G+  +  TYN++I G C+   +E+A +L  +M+ +G      TYN+L+   C 
Sbjct: 506 FDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCK 565

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G   +A  + + M   G   D++TY TLI G CK G++
Sbjct: 566 TGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRV 604



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 166/368 (45%), Gaps = 16/368 (4%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA 125
           P F    P    E L++Q + + ++R F W      F P       +   L +A +F+  
Sbjct: 60  PDFT---PKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYM 116

Query: 126 MDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK-EMGVFGSIKTWNSALL 181
              L+    +G   +     ++++   +  L +E       ++ E  +    + +N  L 
Sbjct: 117 RRVLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLN 176

Query: 182 GCIKIDRTDLV---------WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
             +  ++  LV          ++ HD+     LI+A C   +V     ++ ++   GL P
Sbjct: 177 VLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSP 236

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           + T F  ++  + E  N      +   MV       + T   +ING CK  +  +A    
Sbjct: 237 DETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFI 296

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            +    G+ PD   Y T+++GLCK+G    A ++   M+  GL P+ YTYNS+I G C++
Sbjct: 297 QEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKL 356

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +EEA ++  +M+ +      VTYN +I+ LC   R DEA  +   +  KGI  DV T+
Sbjct: 357 GEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTF 416

Query: 413 NTLIQGYC 420
           N+LIQG C
Sbjct: 417 NSLIQGLC 424



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 148/335 (44%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L   L +    + A+  LD   S   SPN  +    I  LC+   ++EA
Sbjct: 338 GLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEA 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G+   + T+NS + G            L+ ++   G          LI +
Sbjct: 398 TEIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDS 457

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+  K+ E   LL+++  +G       +N LI  FC+ K      E+   M  +  + D
Sbjct: 458 LCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRD 517

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GLCKS++  +A ++ + +   G  PD   Y +++   CK G +  A  +  
Sbjct: 518 SVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQ 577

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  P+  TY ++I G C+   ++ A RL + +  KG   T   YN +I  L    
Sbjct: 578 TMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRN 637

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           RT EA  LF EM  K    D ITY  + +G C  G
Sbjct: 638 RTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGG 672



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 156/341 (45%), Gaps = 19/341 (5%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESG 152
           L +  G  PD+ + N L   L  +   K AMD  +     G  P+  +  + I  LC S 
Sbjct: 403 LLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSR 462

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            +EEA     +++  G   ++  +N+ + G  K  R +   +++ ++   G         
Sbjct: 463 KLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYN 522

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C   +V +  +L+ Q++ +GL P+   +N L++ FC+  +  + ++++ TM + 
Sbjct: 523 TLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSS 582

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  TY  +I+GLCK+ +   A R+   ++ +G V     Y  VI  L K     +A
Sbjct: 583 GCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEA 642

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIA 382
            +++ EM+ K   P+  TY  +  G C     + EA     EM+++G      ++  L  
Sbjct: 643 MRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAE 702

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIF--RDVITYNTLIQGYCK 421
           GLC     D    L + + +K  F  R++ T    I+G+ K
Sbjct: 703 GLCTLSMDDTLVKLVDMIMEKAKFSEREIST----IRGFLK 739



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 102/204 (50%), Gaps = 2/204 (0%)

Query: 224 QVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           +V+ED   + P+   +N L++   +      V     +MV R    D  T+  +I  LCK
Sbjct: 156 KVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCK 215

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
           + +   A  +  ++   G  PD   +TT++ G  + G L  A ++  +M+  G    + T
Sbjct: 216 AHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVT 275

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
            N +I+G+C+   +++A    +E + +G+     TYNTL+ GLC  G    A  + + M 
Sbjct: 276 VNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAML 335

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G+  D+ TYN+LI G CK G+I
Sbjct: 336 LGGLDPDIYTYNSLISGLCKLGEI 359



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 45/196 (22%), Positives = 78/196 (39%), Gaps = 37/196 (18%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFN-DLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           P +FT +++I  L +    + A RVFN   K+  +VP + +Y  ++  L K G     R+
Sbjct: 59  PPDFTPKQLIETLRRQTDEVAALRVFNWASKQPNFVPSSSVYEEILRKLGKAGSFEYMRR 118

Query: 326 MWFEMIHKG------------------------------------LLPNEYTYNSMIHGY 349
           +  EM   G                                    + P+   YN +++  
Sbjct: 119 VLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVL 178

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
              + L+  +  H  M+ +       T+N LI  LC   +   A  + EEM   G+  D 
Sbjct: 179 VDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMPSYGLSPDE 238

Query: 410 ITYNTLIQGYCKEGKI 425
            T+ T++QGY + G +
Sbjct: 239 TTFTTIMQGYIEGGNL 254


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/306 (33%), Positives = 156/306 (50%), Gaps = 14/306 (4%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L S+ F+PN    EL I  LC+  L+EEA   + K+   G   +I+  N  L   +K  R
Sbjct: 108 LKSSKFTPNVYG-ELII-VLCKMELVEEALSMYHKV---GAALTIQACNVLLYVLVKTGR 162

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            +L+W++Y ++I +G          LI   C  G +    E+  ++   G+VP    +  
Sbjct: 163 FELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTI 222

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C          +   M      P+ +TY  +++G CK     +A R++ D+   G
Sbjct: 223 LIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEG 282

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            VPD V +  +I GLCK G +  AR ++  MI   + PN   YNS+I  YC++ ++ EA 
Sbjct: 283 LVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAM 342

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L  E+          TY+ LI GLC   RT+EA ++FE+M ++GI  + +TYN+LI G 
Sbjct: 343 ALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGC 402

Query: 420 CKEGKI 425
           CKEGK+
Sbjct: 403 CKEGKM 408



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 169/350 (48%), Gaps = 19/350 (5%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R ++ + S+ G SP +++   L D          A +  D     G  P      + I+ 
Sbjct: 168 RIYEEMISN-GLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVKGIVPTVIVYTILIRG 226

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-------- 199
           LC    IEEA      ++E+GV+ ++ T+N+ + G  K+       +LY D+        
Sbjct: 227 LCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPD 286

Query: 200 -IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +  G LI   C  G++     L   +++  + P    +N LI  +C+    G VSE + 
Sbjct: 287 VVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDAYCK---VGDVSEAMA 343

Query: 259 TMVARNR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             +   R   +PD FTY  +I GLC   +  EA  +F  + + G + ++V Y ++I G C
Sbjct: 344 LFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCC 403

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A ++  +M   G+ PN  T++++I GYC+I NL+ A  ++ EM+ K      V
Sbjct: 404 KEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVV 463

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TY  +I G C +G   EA  L+ +M   GI  +  T + L+ G CK+GKI
Sbjct: 464 TYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLCKDGKI 513



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 28/322 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELY--- 144
           ++R +Q +    G  PD+V+  +L D L +    K A + F++   FS  PN + +Y   
Sbjct: 271 ALRLYQDMLGE-GLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPN-IAVYNSL 328

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C+ G + EA   F +L+   V   + T++  + G   + RT+    ++  + + G 
Sbjct: 329 IDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGI 388

Query: 205 L---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           L         I   C +GK+ +  E+  Q+ E+G+ P    F+ LI  +C+ +N      
Sbjct: 389 LANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMG 448

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   MV ++ +PD  TY  +I+G CK     EA ++++D+ + G  P+    + ++ GLC
Sbjct: 449 IYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLLDGLC 508

Query: 316 KMGWLGDARKMWFEMIH-------------KGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           K G + DA +++ E I              K  L N   Y ++IHG C+     +A +L 
Sbjct: 509 KDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSKAVKLF 568

Query: 363 KEMLDKGYGETTVTYNTLIAGL 384
            +M   G     V Y  ++ GL
Sbjct: 569 SDMRRYGLQPDEVIYVVMLRGL 590



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 29/181 (16%)

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            + T + +I  +   R   +A   FN   E+    +  +Y+ +IH L     L  AR + 
Sbjct: 26  SSLTPDSLITTVLNCRSPWKALEFFNAAPEK----NIQLYSAIIHVLVGSKLLSHARYLL 81

Query: 328 FEMI------HKG-------------LLPNEYT---YNSMIHGYCRIDNLEEAKRLHKEM 365
            +++      HK              L  +++T   Y  +I   C+++ +EEA  ++ ++
Sbjct: 82  NDLVQNLVKSHKPYHACQLAFSELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKV 141

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G   T    N L+  L   GR +  + ++EEM   G+   VIT+ TLI G C++G +
Sbjct: 142 ---GAALTIQACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDL 198

Query: 426 V 426
           +
Sbjct: 199 L 199


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 104/354 (29%), Positives = 177/354 (50%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQ- 146
           +++RFF+W     GF    ++  V+ D L      + A   ++        N +   +  
Sbjct: 63  VALRFFRWAERQTGFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLIL 122

Query: 147 -----CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-DLVWKLYHDLI 200
                   +  ++E+    F K+   G+   +K  N  L      D + D+  ++Y+ ++
Sbjct: 123 DLLLWIYAKKSMLEKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMV 182

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           E G          ++ +FC  GKV E  +LL Q+ + G +P +  +N L++         
Sbjct: 183 ECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELE 242

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  EL+  M+        +TY+ +I G C+  +  EA R+  ++  RG VP  V Y T++
Sbjct: 243 QAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIM 302

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           +GLCK G + DARK+   M++K L+P+  +YN++I+GY R+ N+ EA  L  E+  +G  
Sbjct: 303 YGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLV 362

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + VTYNTLI GLC  G  D A  L +EM + G   DV T+  L++G+CK G +
Sbjct: 363 PSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNL 416



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 164/341 (48%), Gaps = 19/341 (5%)

Query: 101 GFSPDLVSCN----VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PDL +CN    +L D        +   + +   G  P   +    +   C+ G ++E
Sbjct: 149 GMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQE 208

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A     ++++MG   +  T+N  + G       +   +L  +++  G          LI+
Sbjct: 209 ALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIR 268

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARN 264
            +C  G++ E   L  ++L  G VP    +N ++   C+   +GRVS+   LL  MV +N
Sbjct: 269 GYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCK---WGRVSDARKLLDVMVNKN 325

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  +Y  +I G  +     EA+ +F +L+ RG VP  V Y T+I GLC+MG L  A 
Sbjct: 326 LMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAM 385

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EMI  G  P+ +T+  ++ G+C++ NL  AK L  EML++G       Y T I G 
Sbjct: 386 RLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGE 445

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G   +A+ + EEM  +G   D+ITYN  I G  K G +
Sbjct: 446 LKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNL 486



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 157/338 (46%), Gaps = 18/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P LV+ N +   L +      A   LD   +    P+  S    I      G I EA
Sbjct: 290 GAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEA 349

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           F  F++L+  G+  S+ T+N+ + G  ++   D+  +L  ++I+ G          L++ 
Sbjct: 350 FLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRG 409

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
           FC  G +    EL  ++L  GL P+  A+   I+R   +   G  S+   +   M+AR  
Sbjct: 410 FCKLGNLPMAKELFDEMLNRGLQPDRFAY---ITRIVGELKLGDPSKAFGMQEEMLARGF 466

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY   I+GL K     EA  +   +   G VPD V YT++IH     G L  AR 
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARA 526

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG+ P+  TY  +IH Y     L+ A     EM +KG     +TYN LI GLC
Sbjct: 527 VFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLC 586

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              + D+AY  F EM  KGI  +  TY  LI   C  G
Sbjct: 587 KVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLG 624



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 146/309 (47%), Gaps = 14/309 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L D L       VAM   D     G  P+  +  + ++  C+ G +  A
Sbjct: 360 GLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMA 419

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++   G+      + + ++G +K+      + +  +++  G+          I  
Sbjct: 420 KELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDG 479

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G + E  EL++++L +GLVP++  +  +I       +  +   +   M+++   P 
Sbjct: 480 LHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPS 539

Query: 269 NFTYEEVINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             TY  +I+     R RL+ A   F ++ E+G  P+ + Y  +I+GLCK+  +  A K +
Sbjct: 540 VVTYTVLIHSYA-VRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFF 598

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  KG+ PN+YTY  +I+  C + + +EA RL+K+MLD+     + T++ L+  L   
Sbjct: 599 TEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKHLNKD 658

Query: 388 GRTDEAYHL 396
            ++    HL
Sbjct: 659 YKSHVVRHL 667


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 13/366 (3%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---L 129
           P +    L   +  L S R F      +G +P++ + N+L  +L      + A+     +
Sbjct: 119 PAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDM 178

Query: 130 DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDR 188
              G +PN  +    +   C +G ++ A    S ++E G    ++ T+NS + G  K  R
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            +   K++ +++  G          L+  +C  G + E   +  ++ + GLVP+   F  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C+  N  +   L+  M  R    +  T+  +I+G CK     +A     ++++ G
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P  V Y  +I+G CK+G +  AR++  EM  K + P+  TY+++I GYC++ NL+ A 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +L+++ML KG     +TY++LI GLC   R ++A  LFE M Q G+  D  TY TLI G+
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGH 478

Query: 420 CKEGKI 425
           CKEG +
Sbjct: 479 CKEGNV 484



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 163/338 (48%), Gaps = 12/338 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R    +       P+LV+ N + + L +A   + A    D     G +P+  S    +  
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C+ G + E+   FS++ + G+   + T+ S +    K    +    L   + E G    
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  FC  G + +    + ++ + G+ P    +N LI+ +C+        EL+ 
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M A+   PD  TY  +I+G CK      A+++   + ++G +PD + Y+++I GLC+  
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L DA +++  M+  G+ P+E+TY ++I G+C+  N+E+A  LH EM+ KG     VTY+
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            LI GL    RT EA+ L  ++  +    D I Y+ L+
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/356 (23%), Positives = 171/356 (48%), Gaps = 27/356 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+   L  +  +A   + A+  +      G   N  +    I   C+ G +
Sbjct: 285 TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFL 344

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           ++A  A  ++++ G+  S+  +N+ + G  K+ R DL  +L           D++    +
Sbjct: 345 DDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTI 404

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C  G +   ++L +++L+ G++P+   ++ LI   CE+K      EL   M+    
Sbjct: 405 ISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGV 464

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FTY  +I+G CK     +A  + +++  +G +PD V Y+ +I+GL K     +A +
Sbjct: 465 QPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHR 524

Query: 326 MWFEMIHKGLLPNEYTYNSM---------------IHGYCRIDNLEEAKRLHKEMLDKGY 370
           + F++ H+  +P+   Y+++               + G+C    ++EA ++++ MLD+ +
Sbjct: 525 LLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNW 584

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                 Y+ LI G C  G   +A    ++M + G   +  +  +L++G  +EG +V
Sbjct: 585 KLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVV 640


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + L  ++ + + F + + F   ++  G S N  +  + I CLC    +  A   
Sbjct: 63  PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G   SI T NS L G    +R      L   ++E GY         L+     
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K SE   L+ +++  G  P+   +  +I+  C++        LL+ M       D   
Sbjct: 183 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+ LCK R   +A  +F ++  +G  PD   Y+++I  LC  G   DA ++  +M+
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + PN  T+NS+I  + +   L EA++L  EM+ +      VTYN+LI G C+H R D
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           EA  +F  M  K    DV+TYNTLI G+CK  K+V+
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVD 398



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 177/337 (52%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  PDLV+   + + L +     +A++ L+          + +Y   I  LC+   +++A
Sbjct: 200 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDA 259

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F+++   G+   + T+ S+L+ C+    R     +L  D++E            LI 
Sbjct: 260 LNLFTEMDNKGIRPDVFTY-SSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLID 318

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK+ E  +L  ++++  + P    +N LI+ FC         ++   MV+++  P
Sbjct: 319 AFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 378

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +ING CK++K ++   +F D+  RG V +TV YTT+IHG  +     +A+ ++
Sbjct: 379 DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF 438

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTLIAGLCL 386
            +M+  G+ PN  TYN+++ G C+   LE+A  +  E L K   E  + TYN +  G+C 
Sbjct: 439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF-EYLQKSKMEPDIYTYNIMSEGMCK 497

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G+ ++ + LF  ++ KG+  DVI YNT+I G+CK+G
Sbjct: 498 AGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKG 534



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+   L   L +      A+  ++     G  P+  +    I  LC+ G  + A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +K+++  +   +  +++ +    K    D    L+ ++   G          LI  
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISC 284

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  +LE  + P    FN LI  F ++       +L   M+ R+  P+
Sbjct: 285 LCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 344

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C   +  EA ++F  +  +  +PD V Y T+I+G CK   + D  +++ 
Sbjct: 345 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELFR 404

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +GL+ N  TY ++IHG+ +  + + A+ + K+M+  G     +TYNTL+ GLC +G
Sbjct: 405 DMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 464

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +FE + +  +  D+ TYN + +G CK GK+
Sbjct: 465 KLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKV 501



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 150/338 (44%), Gaps = 15/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+ + + L   L      + A ++  D L+    +PN  +    I    + G + E
Sbjct: 270 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERK-INPNVVTFNSLIDAFAKEGKLIE 328

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   F ++ +  +  +I T+NS + G    DR D   +++          D++    LI 
Sbjct: 329 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIN 388

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   KV +G EL R +   GLV     +  LI  F +  +      +   MV+    P
Sbjct: 389 GFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHP 448

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++GLCK+ K  +A  VF  L++    PD   Y  +  G+CK G + D   ++
Sbjct: 449 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLF 508

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ P+   YN+MI G+C+    EEA  L  +M + G    + TYNTLI      
Sbjct: 509 CSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIRAHLRD 568

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G    +  L +EM       D  TY  L+     +G++
Sbjct: 569 GDKAASAELIKEMRSCRFAGDASTYG-LVTDMLHDGRL 605



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 101/208 (48%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K+ E  +L  ++++    P    F+KL+S   + K F  V      M     + + +TY 
Sbjct: 45  KLDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYN 104

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +IN LC+  +   A  +   + + GY P  V   ++++G C    + +A  +  +M+  
Sbjct: 105 IMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEM 164

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  P+  T+ +++HG  + +   EA  L + M+ KG     VTY  +I GLC  G  D A
Sbjct: 165 GYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLA 224

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +L  +M +  I  DV+ Y+T+I   CK
Sbjct: 225 LNLLNKMEKGKIEADVVIYSTVIDSLCK 252



 Score = 40.0 bits (92), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 22/106 (20%), Positives = 47/106 (44%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L +A  ++ EM+     P+   ++ ++    ++   +      ++M   G      TYN 
Sbjct: 46  LDEAVDLFGEMVKSRPFPSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I  LC   +   A  +  +M + G    ++T N+L+ G+C   +I
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRI 151


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 167/334 (50%), Gaps = 37/334 (11%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMD-----FLD--STGFSPNPNSLELYIQCLCES 151
           H G SPDL+S    F SL+   +    +D     F D  ++G  P+     + I   C +
Sbjct: 318 HRGVSPDLIS----FSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRN 373

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
           G++ EA     K+ E G    +  +N+ L G                           C 
Sbjct: 374 GMMSEALEIRDKMLEQGCALDVVAYNTILNG--------------------------LCK 407

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +++   L  +++E G+VP+   F  LI   C++ N G+   L   M  +N  PD  T
Sbjct: 408 KKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVT 467

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK+ +  +A  ++N++  R   P+ + Y  +++G C +G++ +A ++W EMI
Sbjct: 468 YNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMI 527

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG+ P   T N++I GYCR  +L +A     +M+ +G G  ++TYNTLI G       D
Sbjct: 528 RKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMD 587

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A+ L  +M  KG+  DV+TYN ++ G+C++G++
Sbjct: 588 KAFFLINKMETKGLQPDVVTYNVILNGFCRQGRM 621



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 157/328 (47%), Gaps = 44/328 (13%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +L I+   ++  + E    F  L+  G   SI   NS L G +K+   DL W++Y+++  
Sbjct: 119 DLLIRSYVQARKLNEGTDTFKILRRKGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIAR 178

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           SG          ++ A C D K+ +    L  + + G+  +   +N LI+ +C +   G 
Sbjct: 179 SGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGE 238

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             E++++M  +   P  FTY  VINGLCK  + + A  VFN++   G  PDT  Y T++ 
Sbjct: 239 AFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLV 298

Query: 313 GLCKMGWLGDARKMWFEMIHKG-----------------------------------LLP 337
             C+     +A+ ++ +M+H+G                                   L+P
Sbjct: 299 ESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVP 358

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +   Y  +I+GYCR   + EA  +  +ML++G     V YNT++ GLC      +A  LF
Sbjct: 359 DNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALF 418

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EM ++G+  D  T+ TLI G+CKEG +
Sbjct: 419 DEMVERGVVPDFCTFTTLIHGHCKEGNM 446



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 160/333 (48%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF   + +CN L   LV+     +A +    +  +G   N  +L + +  LC+   I++ 
Sbjct: 145 GFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDV 204

Query: 158 FCAFSKLKEMGVFGSIKTWNS--------ALLG-CIKIDRTDLVWKLYHDLIESGYLIQA 208
                 +++ G+F  I T+N+         LLG   ++  +     L   L     +I  
Sbjct: 205 KPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVING 264

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+      +  ++L  GL P+ T +N L+   C   NF    ++   M+ R  +PD
Sbjct: 265 LCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPD 324

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             ++  +I    ++    +A   F D+K  G VPD V+YT +I+G C+ G + +A ++  
Sbjct: 325 LISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRD 384

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G   +   YN++++G C+   L +A  L  EM+++G      T+ TLI G C  G
Sbjct: 385 KMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEG 444

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +A  LF  M QK I  D++TYN LI G+CK
Sbjct: 445 NMGKALSLFGIMTQKNIKPDIVTYNILIDGFCK 477



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 140/282 (49%), Gaps = 12/282 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G + D+V+ N + + L + +    A    D     G  P+  +    I   C+ G + +A
Sbjct: 390 GCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKA 449

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVW------KLYHDLIESGYLIQA 208
              F  + +  +   I T+N  + G  K   +++ + +W      K++ + I    L+  
Sbjct: 450 LSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNG 509

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN G VSE + L  +++  G+ P     N +I  +C   +  +  E L  M++    PD
Sbjct: 510 YCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPD 569

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +ING  K     +A+ + N ++ +G  PD V Y  +++G C+ G + +A  +  
Sbjct: 570 SITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILR 629

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +MI +G+ P+  TY ++I+GY   DNL+EA R H EML +G+
Sbjct: 630 KMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQRGF 671



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/189 (30%), Positives = 98/189 (51%), Gaps = 3/189 (1%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           LI R   +    RV E++ ++++ +     DN  ++ +I    ++RK  E    F  L+ 
Sbjct: 85  LILRMIRRSGVSRV-EIVESLISMSSTCGVDNLVFDLLIRSYVQARKLNEGTDTFKILRR 143

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +G++       +++ GL KMGW+  A +++ E+   G+  N YT N M++  C+   +++
Sbjct: 144 KGFLVSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDD 203

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            K    +M  KG     VTYNTLI   C  G   EA+ +   M+ KG+   + TYN +I 
Sbjct: 204 VKPFLIDMEQKGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVIN 263

Query: 418 GYCKEGKIV 426
           G CK+G+ V
Sbjct: 264 GLCKKGRYV 272



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 29/247 (11%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESG 152
           + +     PD+V+ N+L D   +    + A +    + S    PN  S  + +   C  G
Sbjct: 455 IMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLG 514

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
            + EAF  + ++   G+  ++ T N+                          +I+ +C  
Sbjct: 515 FVSEAFRLWDEMIRKGIKPTLVTCNT--------------------------VIKGYCRS 548

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G +S+  E L +++ +G+ P++  +N LI+ F + +   +   L++ M  +   PD  TY
Sbjct: 549 GDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKGLQPDVVTY 608

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             ++NG C+  +  EA  +   + ERG  PD   YTT+I+G      L +A +   EM+ 
Sbjct: 609 NVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYTTLINGYVSQDNLKEAFRFHDEMLQ 668

Query: 333 KGLLPNE 339
           +G +P++
Sbjct: 669 RGFVPDD 675


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 106/358 (29%), Positives = 178/358 (49%), Gaps = 34/358 (9%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG- 133
           F  + L +   +  ++  F+ + S     P LV+ NVL +S   A  F  A+D   S   
Sbjct: 15  FVVQSLAKAGMLAQALEVFETMKSE-SCVPSLVTYNVLINSRCNAGEFGKALDLFQSMKR 73

Query: 134 ---FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
                P+  +    I  LC SG  E A    S++++  +  ++ T++S            
Sbjct: 74  EKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSS------------ 121

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                         +I++   + K  E Y++L +++  G  P+  AFN ++  F    N 
Sbjct: 122 --------------IIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNM 167

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVMYT 308
            +  E+   MV     PDN +Y  +I+GL K  K  E+ ++ +++  R  GYVP+ + ++
Sbjct: 168 EKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFS 227

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+IHGLC+ G L  A +++  M+  G  PN+YTY ++I G CR + + +A+ L ++M   
Sbjct: 228 TLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQA 287

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA-QKGIFRDVITYNTLIQGYCKEGKI 425
                 V YN+LIAG C  G  DEA  L+ EM+   G+   ++T+NTLI G+CK GK+
Sbjct: 288 CIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKL 345



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/292 (27%), Positives = 137/292 (46%), Gaps = 29/292 (9%)

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
           ++ +  +Q L ++G++ +A   F  +K      S+ T+N                     
Sbjct: 11  DAYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYN--------------------- 49

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELL 257
                 LI + CN G+  +  +L + +  +  V P+   +N LIS  C   N     +LL
Sbjct: 50  -----VLINSRCNAGEFGKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLL 104

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  +N A + FTY  +I  L K  K  E+Y+V  ++   G  PD   +  V+ G  + 
Sbjct: 105 SEMRDKNIAANVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARS 164

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETTV 375
             +  AR+++  M+  G  P+  +Y+ +IHG  +I  L+E+ ++  EM  +  GY    +
Sbjct: 165 NNMEKAREVYQHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVI 224

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           T++TLI GLC  G  ++A  +F  M + G   +  TY TLI G C+  K++ 
Sbjct: 225 TFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQ 276



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 22/341 (6%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLF----FREFLKQQNNVLLSIRFFQW 95
           Y+ I K + K    KP     +L ++ +   N  +F      +   + NN+  +   +Q 
Sbjct: 119 YSSIIKSLVK--EAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQH 176

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD-----STGFSPNPNSLELYIQCLCE 150
           +    G+ PD VS ++L   L +      ++  L      + G+ PN  +    I  LC 
Sbjct: 177 M-VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCR 235

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIE 201
           +G +E+A   F  + E G   +  T+ + + G  + ++     +L+          D + 
Sbjct: 236 TGELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVA 295

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
              LI  +C  G + E  +L R++    GL P    FN LI  FC+    GR +EL+  M
Sbjct: 296 YNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEM 355

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             +  A D  TY  +I GL ++ K  EA  V+  ++E+ ++ D V   + + GLCK G +
Sbjct: 356 GTKGLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNI 415

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
             A  ++      G +PN  T+  +     ++  +E+A++L
Sbjct: 416 DQAYAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKL 456


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 112/351 (31%), Positives = 168/351 (47%), Gaps = 15/351 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVL----FDSLVEARAFKVAMDFLDSTGFSPNPNSLELY 144
           +I  F  L S  G SP + +  +L    F     A AF +    L S G+ PN  +    
Sbjct: 74  AISLFTQLQSK-GISPSIATFTILINCYFHQSHTAFAFSLLATILKS-GYQPNLVTFNTI 131

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C +G+I +A      L   G      T+ + + G  K  +      L  ++ +S  
Sbjct: 132 INGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSV 191

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C DG VS+   L  Q+ E G++ +   +N LI   C    +  V++
Sbjct: 192 QPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQ 251

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV  N  PD++T+  +I+ LCK  + LEA  V   + +RG  PD V Y  ++ G C
Sbjct: 252 LLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYC 311

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               + +AR+++  M+ +GL P+   YN +I GYC+   ++EA  L KE+ +K    T  
Sbjct: 312 SRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIA 371

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +YN+LI GLC  GR      L +EM       DV+TYN LI   CKEG+I+
Sbjct: 372 SYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRIL 422



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 172/384 (44%), Gaps = 48/384 (12%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           ++ F Q L +  G+  D  +   L + L +    K A+  L   + +   PN       I
Sbjct: 144 ALDFCQNLLAQ-GYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALI 202

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR----TDLVWKLYHDLIE 201
             LC+ G + +A    S++ E G+     T+NS + GC  + R    T L+ K+  + ++
Sbjct: 203 DGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVD 262

Query: 202 S-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI A C +G++ E   +L  + + G  P+   +N L+  +C ++N     EL
Sbjct: 263 PDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEAREL 322

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + MV R   PD   Y  +I+G CK++   EA  +F +L  +  VP    Y ++I GLC 
Sbjct: 323 FNRMVKRGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCN 382

Query: 317 MGWLGDARKMWFEM-----------------------------------IHKGLLPNEYT 341
            G +   +K+  EM                                   + KG+ PN  T
Sbjct: 383 SGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVT 442

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN+M+ GYC  +N+  AK +   M+  G     + YN LI G C     DEA  LF+EM 
Sbjct: 443 YNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMR 502

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
            K +  D+ +YN+LI G C  G+I
Sbjct: 503 HKNLIPDIASYNSLIDGLCNLGRI 526



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 151/333 (45%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D V+ N L D       ++     L         P+  +  + I  LC+ G I EA
Sbjct: 225 GILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEA 284

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               + + + G    I T+N+ + G    +      +L++ +++ G          LI  
Sbjct: 285 QGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDG 344

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C    V E   L +++    LVP   ++N LI   C       V +LL  M    + PD
Sbjct: 345 YCKTKMVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPD 404

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+ LCK  + LEA  V   + ++G  P+ V Y  ++ G C    +  A+ ++ 
Sbjct: 405 VVTYNILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFN 464

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  GL P+   YN +I+GYC+ + ++EA  L KEM  K       +YN+LI GLC  G
Sbjct: 465 RMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLG 524

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           R      L +EM   G   DVITYN L+  +CK
Sbjct: 525 RIPHVQELLDEMCDSGQSPDVITYNILLDAFCK 557



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 155/340 (45%), Gaps = 13/340 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESG 152
           + S  G  PD+V+ N L +          A +  +     G  P+  +  + I   C++ 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESG 203
           +++EA   F +L    +  +I ++NS + G     R   V KL           D++   
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI A C +G++ E   +L  +++ G+ P    +N ++  +C + N     ++ + MV  
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD   Y  +ING CK+    EA  +F +++ +  +PD   Y ++I GLC +G +   
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++  EM   G  P+  TYN ++  +C+    ++A  L +++++ G      T + ++  
Sbjct: 530 QELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIVE-GIWPDFYTNHAIVDN 588

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           LC   +   A    + +   G   +V TY  LI   CK+G
Sbjct: 589 LCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDG 628



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 106/222 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A    G       L  Q+   G+ P    F  LI+ +  + +      LL T++   
Sbjct: 61  LLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSLLATILKSG 120

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  T+  +ING C +    +A     +L  +GY+ D   Y T+I+GL K G +  A 
Sbjct: 121 YQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSKNGQIKAAL 180

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM    + PN   Y+++I G C+   + +A  L  ++ ++G     VTYN+LI G 
Sbjct: 181 HLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGC 240

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  GR  E   L  +M ++ +  D  T+N LI   CKEG+I+
Sbjct: 241 CSVGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRIL 282



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/272 (23%), Positives = 118/272 (43%), Gaps = 30/272 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N + D         VA D  +    +G  P+  +  + I   C++ +++EA
Sbjct: 435 GVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTEMVDEA 494

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++   +   I ++NS                          LI   CN G++  
Sbjct: 495 IVLFKEMRHKNLIPDIASYNS--------------------------LIDGLCNLGRIPH 528

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             ELL ++ + G  P+   +N L+  FC+ + F +   L   +V     PD +T   +++
Sbjct: 529 VQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLFRQIV-EGIWPDFYTNHAIVD 587

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK  K   A      L   G  P+   YT +I+ LCK G  G+A  +  +M      P
Sbjct: 588 NLCKGEKLKMAEDALKHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPP 647

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +  T+  +I    + +  ++A++L +EM+ +G
Sbjct: 648 DAITFEIIIGVLLQRNETDKAEKLREEMIARG 679



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 93/193 (48%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P  + F+KL+       ++     L   + ++  +P   T+  +IN          A+ +
Sbjct: 53  PPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTILINCYFHQSHTAFAFSL 112

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + GY P+ V + T+I+G C  G +  A      ++ +G L +++TY ++I+G  +
Sbjct: 113 LATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQGYLFDQFTYGTLINGLSK 172

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              ++ A  L +EM         V Y+ LI GLC  G   +A  L  ++ ++GI  D +T
Sbjct: 173 NGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVT 232

Query: 412 YNTLIQGYCKEGK 424
           YN+LI G C  G+
Sbjct: 233 YNSLIDGCCSVGR 245



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/179 (25%), Positives = 83/179 (46%)

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C  +N        + MV     P    +++++  + +      A  +F  L+ +G  P  
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             +T +I+          A  +   ++  G  PN  T+N++I+G+C    + +A    + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +L +GY     TY TLI GL  +G+   A HL +EM +  +  +++ Y+ LI G CK+G
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSSVQPNLVMYSALIDGLCKDG 209



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/146 (28%), Positives = 70/146 (47%)

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C+ R   +A   FN +      P T ++  ++  + +MG    A  ++ ++  KG+ P+ 
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T+  +I+ Y    +   A  L   +L  GY    VT+NT+I G C++G   +A    + 
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  +G   D  TY TLI G  K G+I
Sbjct: 151 LLAQGYLFDQFTYGTLINGLSKNGQI 176



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 26/114 (22%), Positives = 49/114 (42%)

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           H  C+   + DA   +  M+     P    ++ ++    R+ +   A  L  ++  KG  
Sbjct: 28  HKNCRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGIS 87

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  T+  LI        T  A+ L   + + G   +++T+NT+I G+C  G I
Sbjct: 88  PSIATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMI 141


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 164/335 (48%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  PD+ +  ++ +SL        A   L      G  P+  +    I+ LC  G I E
Sbjct: 99  FGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGE 158

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLI 206
           A   F K+   G   ++ T+ + + G  K+  T    +L   + E G           LI
Sbjct: 159 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM-EQGNCQPNVVVFSTLI 217

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + +  +++  G+ P    +N LI   C+   +  V+ L++ MV     
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 277

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD FT   V++ LCK     EA+ V + +  RG  P+ V Y  ++ G C    +  A K+
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 337

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+HK  + N  +YN++I+GYC+I ++++A  L +EM  +     TVTYNTLI GLC 
Sbjct: 338 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCH 397

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR  +A  LF EM  +G   D++TY TL    CK
Sbjct: 398 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 169/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L + L +      A+  L S       PN       I  LC+   + EA
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+  +I T+NS + G  K+     V  L +++++S  +         + A
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V+E ++++  ++  G+ P    +N L+   C +       ++  TMV ++   +
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVAN 349

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +   +A  +F ++  +   P+TV Y T+IHGLC +G L DA  ++ 
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G +P+  TY ++    C+  +L++A  L K +    +      Y T++ G+C  G
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             ++A  LF  ++ KG+  +V TYN +I G CK+G
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG 504



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 160/339 (47%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P  V  N L  S+ + +     +     +DS G  P+  +L + I  LC    ++
Sbjct: 63  HKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVD 122

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            AF A +K+ ++G      T+ + + G     +      L+  +I  G+         LI
Sbjct: 123 FAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G  S    LLR + +    P    F+ LI   C+ +       +   M+ +  +
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I+GLCK  +      + N++ +   +PD     TV+  LCK G + +A  +
Sbjct: 243 PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              MIH+G+ PN  TYN+++ G+C  + ++ A ++   M+ K      ++YNTLI G C 
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               D+A +LFEEM+++ +  + +TYNTLI G C  G++
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRL 401



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+ N L   L    E +     M+ +  +   P+  +L   +  LC+ G++ EA
Sbjct: 240 GISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEA 299

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 +   GV  ++ T+N+ + G    +  D+  K++          ++I    LI  
Sbjct: 300 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C    V +   L  ++    L P    +N LI   C          L H MVAR + PD
Sbjct: 360 YCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 419

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  + + LCK+R   +A  +   ++   + PD  +YTT++ G+C+ G L DAR ++ 
Sbjct: 420 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL PN +TYN MIHG C+   L EA +L  EM   G      TYN +  G   + 
Sbjct: 480 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 539

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                  L EEM  +G   DV T   L+     +G
Sbjct: 540 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 107/207 (51%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + E      ++L     P    FN+L++   + K+   +  L   M +    PD +T   
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VIN LC   +   A+     + + G+ PD   +TT+I GLC  G +G+A  ++ +MI +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN  TY ++I+G C++ N   A RL + M         V ++TLI  LC   +  EA+
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++F EM  KGI  +++TYN+LI G CK
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCK 257



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 3/180 (1%)

Query: 249 NFGRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +F  + E L T   M+ +   P    +  ++  + K++       +   +   G  PD  
Sbjct: 47  HFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVY 106

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
               VI+ LC +  +  A     +++  G  P+  T+ ++I G C    + EA  L  +M
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +G+    VTY TLI GLC  G T  A  L   M Q     +V+ ++TLI   CK+ ++
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ NV+ D+   A   + AM  +DS    G  P   +    ++ L  +G  ++A   
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREV 251

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F  +   GV   ++++N  + G  +    +   + Y          D++    LI  F  
Sbjct: 252 FRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTR 311

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++    E LR++ E GL+P+   +  +I  FC          +   MVA    PD  T
Sbjct: 312 RGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVT 371

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLCK R+  +A  + N++KERG  PD   +TT+IHG C+ G +  A + +  + 
Sbjct: 372 YNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTIS 431

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + L P+  TYN++I G CR  +L +A  L  +M  +      VTY+ LI   C  G+ D
Sbjct: 432 DQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVD 491

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A+   +EM  KGI  +++TYN++I+GYC+ G +
Sbjct: 492 NAFAFLDEMVNKGIVPNIMTYNSIIKGYCRSGNV 525



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 167/347 (48%), Gaps = 13/347 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++RF++ +      +PD+VS + L            A ++L      G  P+     + I
Sbjct: 283 ALRFYKEMRGRR-VTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMVI 341

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C +GL+ EA     ++   G    + T+N+ L G  K  R     +L +++ E G  
Sbjct: 342 GGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVP 401

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C DG + +  +    + +  L P+   +N LI   C + + G+ +EL
Sbjct: 402 PDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANEL 461

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M +R   P++ TY  +I+  C+  +   A+   +++  +G VP+ + Y ++I G C+
Sbjct: 462 WDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIKGYCR 521

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +   ++   +M H  ++P+  TYN++IHGY +   + EA  L K M ++      VT
Sbjct: 522 SGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVT 581

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           YN +I+G  +HG   EA  ++++M  +GI  D  TY ++I G+   G
Sbjct: 582 YNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAG 628



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 116/231 (50%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           ++ D++    ++ A    G V     L+  ++  G+ P    +N ++        + +  
Sbjct: 190 VFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAR 249

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           E+   M A   APD  ++  +I G C++ +  EA R + +++ R   PD V ++ +I   
Sbjct: 250 EVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLF 309

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            + G +  A +   EM   GL+P+   Y  +I G+CR   + EA R+  EM+  G     
Sbjct: 310 TRRGEMDHAAEYLREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDV 369

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           VTYNTL+ GLC   R  +A  L  EM ++G+  D+ T+ TLI GYC++G I
Sbjct: 370 VTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNI 420



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 132/300 (44%), Gaps = 9/300 (3%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P P   +L I+   +S    EAF AF  L +  V       N+ L    +     L   
Sbjct: 86  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALSRAGWPHLTAD 145

Query: 195 LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
            Y  ++ S           ++ ++C   +  E   ++ ++ +  + P+    N ++    
Sbjct: 146 AYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARF 205

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              +      L+ +MV++   P   TY  V+ GL ++ +  +A  VF  +   G  PD  
Sbjct: 206 RAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVR 265

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +  +I G C+ G L +A + + EM  + + P+  +++ +I  + R   ++ A    +EM
Sbjct: 266 SFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM 325

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + G     V Y  +I G C  G   EA  + +EM   G   DV+TYNTL+ G CKE ++
Sbjct: 326 REFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRL 385



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 111/261 (42%), Gaps = 30/261 (11%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
           +  N+  +++FF  + S     PD+V+ N L D +        A +  D   S    PN 
Sbjct: 416 RDGNIEKALQFFDTI-SDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNH 474

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I   CE G ++ AF    ++   G+  +I T+NS                    
Sbjct: 475 VTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS-------------------- 514

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I+ +C  G VS+G + L ++  D ++P+   +N LI  + ++        LL 
Sbjct: 515 ------IIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLK 568

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M   N  PD  TY  +I+G        EA  V+  +  RG  PD   Y ++I+G    G
Sbjct: 569 IMENENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAG 628

Query: 319 WLGDARKMWFEMIHKGLLPNE 339
               + ++  EM+ KGL P++
Sbjct: 629 NSKKSFQLHDEMLQKGLAPDD 649



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 35/206 (16%)

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN-DLKERGYVP----------- 302
           +++ +++A +  P    ++ +I    +SRK  EA+  F   L  R  +P           
Sbjct: 75  DIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAAL 134

Query: 303 -----------------------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
                                  +T     ++H  CK    G+   +  EM  + + P+ 
Sbjct: 135 SRAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDV 194

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T+N M+    R  ++E A  L   M+ KG     VTYN+++ GL  +GR D+A  +F  
Sbjct: 195 VTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRA 254

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M   G+  DV ++N LI G+C+ G++
Sbjct: 255 MDACGVAPDVRSFNMLIGGFCRAGEL 280


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 164/335 (48%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  PD+ +  ++ +SL        A   L      G  P+  +    I+ LC  G I E
Sbjct: 99  FGIPPDVYTLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGE 158

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLI 206
           A   F K+   G   ++ T+ + + G  K+  T    +L   + E G           LI
Sbjct: 159 ALHLFDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSM-EQGNCQPNVVVFSTLI 217

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + +  +++  G+ P    +N LI   C+   +  V+ L++ MV     
Sbjct: 218 DSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 277

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD FT   V++ LCK     EA+ V + +  RG  P+ V Y  ++ G C    +  A K+
Sbjct: 278 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 337

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+HK  + N  +YN++I+GYC+I ++++A  L +EM  +     TVTYNTLI GLC 
Sbjct: 338 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCH 397

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR  +A  LF EM  +G   D++TY TL    CK
Sbjct: 398 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 432



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 169/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L + L +      A+  L S       PN       I  LC+   + EA
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+  +I T+NS + G  K+     V  L +++++S  +         + A
Sbjct: 230 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 289

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V+E ++++  ++  G+ P    +N L+   C +       ++  TMV ++   +
Sbjct: 290 LCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVAN 349

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +   +A  +F ++  +   P+TV Y T+IHGLC +G L DA  ++ 
Sbjct: 350 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 409

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G +P+  TY ++    C+  +L++A  L K +    +      Y T++ G+C  G
Sbjct: 410 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 469

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             ++A  LF  ++ KG+  +V TYN +I G CK+G
Sbjct: 470 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG 504



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 160/339 (47%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P  V  N L  S+ + +     +     +DS G  P+  +L + I  LC    ++
Sbjct: 63  HKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVD 122

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            AF A +K+ ++G      T+ + + G     +      L+  +I  G+         LI
Sbjct: 123 FAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 182

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G  S    LLR + +    P    F+ LI   C+ +       +   M+ +  +
Sbjct: 183 NGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGIS 242

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I+GLCK  +      + N++ +   +PD     TV+  LCK G + +A  +
Sbjct: 243 PNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDV 302

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              MIH+G+ PN  TYN+++ G+C  + ++ A ++   M+ K      ++YNTLI G C 
Sbjct: 303 VDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               D+A +LFEEM+++ +  + +TYNTLI G C  G++
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRL 401



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+ N L   L    E +     M+ +  +   P+  +L   +  LC+ G++ EA
Sbjct: 240 GISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEA 299

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 +   GV  ++ T+N+ + G    +  D+  K++          ++I    LI  
Sbjct: 300 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 359

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C    V +   L  ++    L P    +N LI   C          L H MVAR + PD
Sbjct: 360 YCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 419

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  + + LCK+R   +A  +   ++   + PD  +YTT++ G+C+ G L DAR ++ 
Sbjct: 420 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 479

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL PN +TYN MIHG C+   L EA +L  EM   G      TYN +  G   + 
Sbjct: 480 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 539

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                  L EEM  +G   DV T   L+     +G
Sbjct: 540 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 574



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 67/207 (32%), Positives = 107/207 (51%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + E      ++L     P    FN+L++   + K+   +  L   M +    PD +T   
Sbjct: 51  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 110

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VIN LC   +   A+     + + G+ PD   +TT+I GLC  G +G+A  ++ +MI +G
Sbjct: 111 VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 170

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN  TY ++I+G C++ N   A RL + M         V ++TLI  LC   +  EA+
Sbjct: 171 FQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEAF 230

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++F EM  KGI  +++TYN+LI G CK
Sbjct: 231 NIFSEMITKGISPNIVTYNSLIHGLCK 257



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 81/180 (45%), Gaps = 3/180 (1%)

Query: 249 NFGRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +F  + E L T   M+ +   P    +  ++  + K++       +   +   G  PD  
Sbjct: 47  HFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVY 106

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
               VI+ LC +  +  A     +++  G  P+  T+ ++I G C    + EA  L  +M
Sbjct: 107 TLAIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM 166

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +G+    VTY TLI GLC  G T  A  L   M Q     +V+ ++TLI   CK+ ++
Sbjct: 167 IGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQV 226


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 176/349 (50%), Gaps = 24/349 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + +VL D L +      A   L+     G  P+  +    ++ LC    I +A
Sbjct: 367 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKA 426

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------------IES 202
              F K++++G   ++ T  + + G  +     +  +L+ ++               I  
Sbjct: 427 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 486

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C  G+  E  EL +++   G++P+  ++  LI  FC    +     L + MV 
Sbjct: 487 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 546

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T+  +I+ LCK  K +EA  +   + +RG +P+TV YTT++ GLC    + +
Sbjct: 547 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISE 606

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKG-YGET----TVT 376
           A +++ +M   G LP+  TY +++ G C+  N++ A  LHK+ML D G YG       ++
Sbjct: 607 ATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVIS 666

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y+ +I GLC HGR DEA  LF+EM   G+  +VI+Y +LI G+C+ GK+
Sbjct: 667 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 715



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 169/340 (49%), Gaps = 41/340 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF-----LDSTGFS----PNPNSLELYIQCLCES 151
           G  P++V+C  L   L ++   K+A++       D++ +     PN  S  + I  LC+ 
Sbjct: 437 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC 496

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
           G  +EA   F ++K +GV   + ++ S                          LI  FC 
Sbjct: 497 GREDEARELFKEMKALGVIPDVISYTS--------------------------LIHGFCR 530

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  +   L  ++++ G+ P+ T F+ LI   C++      +ELL  M+ R   P+  T
Sbjct: 531 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT 590

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++ GLC + +  EA ++F  +++ G +PD V Y T++ GLC+ G +  A ++  +M+
Sbjct: 591 YTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKML 650

Query: 332 HK------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
                      P+  +Y+ +I G C+    +EA+ L KEM   G     ++Y +LI G C
Sbjct: 651 SDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFC 710

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+ ++A HLF EM  +G+  + +TY+ +I G+CKEG+I
Sbjct: 711 RSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQI 750



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 182/369 (49%), Gaps = 23/369 (6%)

Query: 80  LKQQNNVLLSIRFFQWL---HSHYGFS--PDLVSCNVLFDSLVEARAFKVAMDF---LDS 131
           L Q  N+  +++  Q +      YG    P L+S +++ D L + R    A +    + +
Sbjct: 271 LCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKA 330

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P+  S    I   C SG  E+A C F+++ ++G+   + T +  +    K  +   
Sbjct: 331 QGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIE 390

Query: 192 VWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
             KL   +I+ G          L++  C   ++S+  +L  ++ + G +P       L+ 
Sbjct: 391 ANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMK 450

Query: 243 RFCEKKNFGRVSELLHTMVAR------NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             C+  N     EL   M++       N  P+  +Y  +I+GLCK  +  EA  +F ++K
Sbjct: 451 GLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMK 510

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G +PD + YT++IHG C+ G   DA+ ++ EM+  G+ P+  T++ +I   C+   + 
Sbjct: 511 ALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVI 570

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  L + M+ +G    TVTY TL+ GLC++ R  EA  LF +M + G   DV+TY TL+
Sbjct: 571 EANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLM 630

Query: 417 QGYCKEGKI 425
           +G C+ G I
Sbjct: 631 KGLCQTGNI 639



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 24/350 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G  PD+ +  VL D   +      A + L+     G   +  +    I+ LC    I 
Sbjct: 3   HVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRIS 62

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------------LI 200
           EA   F  +K++G       + + + G  +  + ++   L+ +               L+
Sbjct: 63  EATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLV 122

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I   C D +  E  EL +++   G++P+  ++  LI  FC    + +   L + M
Sbjct: 123 SYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEM 182

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +      D  T   +I+ LCK  K +EA  +   + +RG + D V Y+T+I GLC    +
Sbjct: 183 LDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRI 242

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKG-YG----ETT 374
            +A +++  M   G  P+   Y +++ G C+  N+  A +LH+EML D G YG     T 
Sbjct: 243 SEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTL 302

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           ++Y+ +I GLC   R DEA  LF+EM  +GI  DVI+Y TLI G+C  GK
Sbjct: 303 ISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGK 352



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/269 (32%), Positives = 125/269 (46%), Gaps = 41/269 (15%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D+  SG LI  FC +GKV E  ELL  +++ G + +   ++ LI   C K      ++L 
Sbjct: 9   DVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQLF 68

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV----FNDLKERGYV--PDTVMYTTVI 311
            +M      PD   Y  ++ GLC++ K   A  +     ND  + G    P  V Y+ +I
Sbjct: 69  MSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIII 128

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK     +AR+++ EM  +G++P+  +Y S+IHG+CR    E+AK L  EMLD G  
Sbjct: 129 DGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEMLDVGIR 188

Query: 372 ETT-----------------------------------VTYNTLIAGLCLHGRTDEAYHL 396
                                                 VTY+TLI GLC+  R  EA  L
Sbjct: 189 SDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEATRL 248

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           F  M + G   D I Y TL++G C+ G I
Sbjct: 249 FMSMQKLGCRPDAIAYGTLMKGLCQTGNI 277



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/385 (25%), Positives = 167/385 (43%), Gaps = 59/385 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+ + ++L D L +      A + L+     G   +  +    I+ LC    I EA
Sbjct: 186 GIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRISEA 245

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------------LIES 202
              F  ++++G       + + + G  +    +   +L+ +               LI  
Sbjct: 246 TRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPTLISY 305

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C D +  E  EL +++   G++P+  ++  LI  FC    + +   L + M+ 
Sbjct: 306 SIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLD 365

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T   +I+ LCK  K +EA ++   + +RG +PD V  TT++ GLC    +  
Sbjct: 366 VGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISK 425

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD--KGYG----ETTVT 376
           A +++ +M   G +PN  T  +++ G C+  N++ A  LHK ML     YG       ++
Sbjct: 426 ATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAIS 485

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC---------------- 420
           Y+ +I GLC  GR DEA  LF+EM   G+  DVI+Y +LI G+C                
Sbjct: 486 YSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMV 545

Query: 421 -------------------KEGKIV 426
                              KEGK++
Sbjct: 546 DIGVQPDVTTFSVLIDMLCKEGKVI 570



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 78/242 (32%), Positives = 116/242 (47%), Gaps = 41/242 (16%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +L  G+ P+ T    LI  FC++      +ELL  MV R    D  TY  +I GLC   +
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG----------------------- 321
             EA ++F  +K+ G  PD + Y T++ GLC+ G +                        
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPT 120

Query: 322 ------------------DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
                             +AR+++ EM  +G++P+  +Y S+IHG+CR    E+AK L  
Sbjct: 121 LVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFN 180

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EMLD G      T + LI  LC  G+  EA  L E M Q+G   D++TY+TLI+G C + 
Sbjct: 181 EMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKH 240

Query: 424 KI 425
           +I
Sbjct: 241 RI 242


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 156/300 (52%), Gaps = 14/300 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTD 190
           G S N  +  ++I+ LCE G +EEA    + ++ MG + +  + T+N+ + G  K  +  
Sbjct: 241 GMSANKFTCNIWIRGLCEDGRLEEAV---ALVERMGAYVAPDVVTYNTLMRGLCKDSKVQ 297

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +    ++  G          +I  +C  G + E  ELL+  +  G VP+   +  LI
Sbjct: 298 EAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLI 357

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           +  C + +  R  EL +   A++  PD   Y  ++ GLC+    L A +V N++ E G  
Sbjct: 358 NGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCH 417

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD   Y  +I+GLCKMG + DA  +  + I KG LP+ +T+N++I GYC+   L+ A +L
Sbjct: 418 PDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQL 477

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            + M   G     +TYN+++ GLC  G+  E    FEEM  KG   + ITYN LI+ +CK
Sbjct: 478 VERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCK 537



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 11/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEAF 158
           G S +  +CN+    L E    + A+  ++  G   +P+  +    ++ LC+   ++EA 
Sbjct: 241 GMSANKFTCNIWIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAA 300

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++   G      T+N+ + G  K        +L  D +  G+         LI   
Sbjct: 301 QYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGL 360

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C +G +    EL  +     L P+   +N L+   C +       ++++ MV     PD 
Sbjct: 361 CAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDI 420

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +TY  +INGLCK     +A  V ND   +GY+PD   + T+I G CK   L  A ++   
Sbjct: 421 WTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 480

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G+ P+  TYNS+++G C+    +E     +EM+ KG     +TYN LI   C   +
Sbjct: 481 MWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQ 540

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA  +   M Q G+  D +++NTLI G+C+ G +
Sbjct: 541 LEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDL 576



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N + D   ++   + A + L      GF P+  +    I  LC  G IE A
Sbjct: 310 GCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERA 369

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F++ +   +   +  +NS + G  +        ++ ++++E G          +I  
Sbjct: 370 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIING 429

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +S+   ++   +  G +P+   FN LI  +C++       +L+  M     APD
Sbjct: 430 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD 489

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  V+NGLCK+ K  E    F ++  +G  P+ + Y  +I   CK+  L +A  +  
Sbjct: 490 VITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 549

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   GL+P+  ++N++IHG+CR  +L+ A  L +++ +KGY  T  T+N LI       
Sbjct: 550 RMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKL 609

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A  +F EM  KG   D+ TY  L+ G CK   +
Sbjct: 610 NMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANV 646



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 159/329 (48%), Gaps = 12/329 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD+V+ N L   L +    + A  +L    + G  P+  +    I   C+SG+++EA  
Sbjct: 277 APDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATE 336

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFC 210
                   G      T+ S + G       +   +L++         DL+    L++  C
Sbjct: 337 LLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLC 396

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G +    +++ +++E+G  P+   +N +I+  C+  N    + +++  + +   PD F
Sbjct: 397 RQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVF 456

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +I+G CK  K   A ++   +   G  PD + Y +V++GLCK G   +  + + EM
Sbjct: 457 TFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEM 516

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I KG  PN  TYN +I  +C+I+ LEEA  +   M   G     V++NTLI G C +G  
Sbjct: 517 ILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDL 576

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           D AY LF+++ +KG      T+N LI  Y
Sbjct: 577 DGAYLLFQKLDEKGYSATADTFNILIGAY 605



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 156/339 (46%), Gaps = 51/339 (15%)

Query: 138 PNSLE-LY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
           P+SL+ LY   IQ    +G +  A  AF ++       +   +N+ +   +     D   
Sbjct: 67  PDSLQPLYVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAH 126

Query: 194 KLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDG--------------- 229
           K+Y  ++ +G           +++FC  G+      LLR + E G               
Sbjct: 127 KVYVRMLAAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERGCDAKPAAYCTVVRGL 186

Query: 230 --------------------LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
                               + P+   FN ++   C+K +      LL  ++ R  + + 
Sbjct: 187 YAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANK 246

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWF 328
           FT    I GLC+  +  EA  +   +    YV PD V Y T++ GLCK   + +A +   
Sbjct: 247 FTCNIWIRGLCEDGRLEEAVALVERMG--AYVAPDVVTYNTLMRGLCKDSKVQEAAQYLG 304

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+++G +P+++TYN++I GYC+   L+EA  L K+ + KG+    VTY +LI GLC  G
Sbjct: 305 RMMNQGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEG 364

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             + A  LF E   K +  D++ YN+L++G C++G I++
Sbjct: 365 DIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILH 403



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 175/411 (42%), Gaps = 39/411 (9%)

Query: 23  NTQLRNLSIETK--ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPS-FNFNDPL--FFR 77
           NT +R L  ++K  E+ Q    +  Q C                IP  F +N  +  + +
Sbjct: 284 NTLMRGLCKDSKVQEAAQYLGRMMNQGC----------------IPDDFTYNTIIDGYCK 327

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN 137
             + Q+   LL    F+      GF PD V+   L + L      + A++  +       
Sbjct: 328 SGMLQEATELLKDAVFK------GFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDL 381

Query: 138 PNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
              L +Y   ++ LC  GLI  A    +++ E G    I T+N  + G  K+        
Sbjct: 382 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAV 441

Query: 195 LYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           + +D I  GYL         I  +C   K+    +L+ ++   G+ P+   +N +++  C
Sbjct: 442 VMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLC 501

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +      V+E    M+ +   P+  TY  +I   CK  +  EA  V   + + G VPD V
Sbjct: 502 KAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAV 561

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            + T+IHG C+ G L  A  ++ ++  KG      T+N +I  Y    N++ A+++  EM
Sbjct: 562 SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEM 621

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           + KGY     TY  L+ GLC     D AY    EM  KG    + T+  ++
Sbjct: 622 ISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRML 672



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/259 (23%), Positives = 113/259 (43%), Gaps = 12/259 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N++ + L +        V M+     G+ P+  +    I   C+   ++ A
Sbjct: 415 GCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSA 474

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G+   + T+NS L G  K  +   V + + ++I  G          LI+ 
Sbjct: 475 LQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIEN 534

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   ++ E   ++ ++ +DGLVP+  +FN LI  FC   +      L   +  +  +  
Sbjct: 535 FCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSAT 594

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I           A ++F ++  +GY PD   Y  ++ GLCK   +  A     
Sbjct: 595 ADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLA 654

Query: 329 EMIHKGLLPNEYTYNSMIH 347
           EMI KG +P+  T+  M++
Sbjct: 655 EMISKGFVPSMATFGRMLN 673



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/249 (22%), Positives = 112/249 (44%), Gaps = 12/249 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+ + N L D   +      A+  ++   + G +P+  +    +  LC++G  +E 
Sbjct: 450 GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEV 509

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR----TDLVWK-----LYHDLIESGYLIQA 208
              F ++   G   +  T+N  +    KI++    + ++ +     L  D +    LI  
Sbjct: 510 NETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHG 569

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G +   Y L +++ E G       FN LI  +  K N     ++   M+++   PD
Sbjct: 570 FCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 629

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++GLCK+     AY    ++  +G+VP    +  +++ L     + +A  +  
Sbjct: 630 LYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIH 689

Query: 329 EMIHKGLLP 337
            M+  G++P
Sbjct: 690 IMVRMGVVP 698


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 163/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N L  +L +      +    D     G  PN  +  ++IQ LC+ G ++ A   
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
              +   G+   + T+N+ + G  +  R     +  H ++  G+         +I  +C 
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G V +   +L+  +  G  P+   +  L++ FC+  +  +   +    + +   P    
Sbjct: 413 KGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIV 472

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I GLC+    L A ++ N++ E+G  PD   Y  +I+GLCKMG L DA  +  + I
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG +P+ +TYN+++ GYCR   L+ A  L   M  +G     +TYNTL+ GLC   +++
Sbjct: 533 TKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSE 592

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E   +F+ M +KG   ++ITYNT+I+  C   K+
Sbjct: 593 EVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKV 626



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 159/333 (47%), Gaps = 14/333 (4%)

Query: 104 PDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P + S N + + LVE     +A KV M   D      +  +  + I+  C +G    A  
Sbjct: 188 PSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKK-VESDVYTYTIRIKSFCRTGRPYAALR 246

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFC 210
               +  +G F +   + + + G  +    D   +L+ +++E            L+ A C
Sbjct: 247 LLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALC 306

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G V E   L  +VL+ G+ P    FN  I   C++ +  R   LL  +      PD  
Sbjct: 307 KKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVV 366

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  VI GLC+  + +EA    + +   G+ P+   Y ++I G CK G + DA ++  + 
Sbjct: 367 TYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRILKDA 426

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + KG  P+E+TY S+++G+C+  + ++A  + K+ L KG   + + YNTLI GLC  G  
Sbjct: 427 VFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLI 486

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             A  L  EMA+KG   D+ TYN +I G CK G
Sbjct: 487 LPALQLMNEMAEKGCKPDIWTYNLIINGLCKMG 519



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 171/380 (45%), Gaps = 18/380 (4%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           E  L  D+ +FN          L ++  VL S R F  +    G  P+L + N+    L 
Sbjct: 288 ECCLCPDVTTFNK-----LVHALCKKGFVLESERLFDKVLKR-GVCPNLFTFNIFIQGLC 341

Query: 118 EARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +  +   A+  L      G  P+  +    I  LC    + EA     K+   G   +  
Sbjct: 342 KEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDF 401

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
           T+NS + G  K        ++  D +  G+         L+  FC DG   +   + +  
Sbjct: 402 TYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDG 461

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L  GL P    +N LI   C++       +L++ M  +   PD +TY  +INGLCK    
Sbjct: 462 LGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCL 521

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            +A  +  D   +G +PD   Y T++ G C+   L  A ++   M  +G+ P+  TYN++
Sbjct: 522 SDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTL 581

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           ++G C+    EE   + K M +KG     +TYNT+I  LC   + +EA  L  EM  KG+
Sbjct: 582 LNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGL 641

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             DV+++ TLI G+CK G +
Sbjct: 642 TPDVVSFGTLITGFCKVGDL 661



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 148/307 (48%), Gaps = 9/307 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL-------- 180
           +D     P+  S    +  L E G   +A   + ++K+  V   + T+   +        
Sbjct: 181 MDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTIRIKSFCRTGR 240

Query: 181 -LGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
               +++ R   V   + + +    ++  F   G      EL  ++LE  L P+ T FNK
Sbjct: 241 PYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNK 300

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           L+   C+K        L   ++ R   P+ FT+   I GLCK      A R+   +   G
Sbjct: 301 LVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREG 360

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             PD V Y TVI GLC+   + +A +   +M++ G  PN++TYNS+I GYC+   + +A 
Sbjct: 361 LRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDAN 420

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R+ K+ + KG+     TY +L+ G C  G  D+A  +F++   KG+   +I YNTLI+G 
Sbjct: 421 RILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGL 480

Query: 420 CKEGKIV 426
           C++G I+
Sbjct: 481 CQQGLIL 487



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 166/372 (44%), Gaps = 25/372 (6%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           F FN    F + L ++ ++  ++R    + S  G  PD+V+ N +   L        A +
Sbjct: 331 FTFN---IFIQGLCKEGSLDRAVRLLGCV-SREGLRPDVVTYNTVICGLCRKSRVVEAEE 386

Query: 128 FLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK----TWNSAL 180
            L    + GF PN  +    I   C+ G++ +A    +++ +  VF   K    T+ S +
Sbjct: 387 CLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDA----NRILKDAVFKGFKPDEFTYCSLV 442

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  +    D    ++ D +  G          LI+  C  G +    +L+ ++ E G  
Sbjct: 443 NGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCK 502

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+   +N +I+  C+       + L+   + +   PD FTY  +++G C+  K   A  +
Sbjct: 503 PDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIEL 562

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            N +  +G  PD + Y T+++GLCK     +  +++  M  KG  PN  TYN++I   C 
Sbjct: 563 VNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCN 622

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM-AQKGIFRDVI 410
              + EA  L  EM  KG     V++ TLI G C  G  D AY LF  M  Q  +     
Sbjct: 623 SKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTA 682

Query: 411 TYNTLIQGYCKE 422
           TYN +I  + ++
Sbjct: 683 TYNIIISAFSEQ 694



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 146/339 (43%), Gaps = 15/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD  +   L +   +     +A  V  D L   G  P+       I+ LC+ GLI  
Sbjct: 430 GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGL-GKGLRPSIIVYNTLIKGLCQQGLILP 488

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A    +++ E G    I T+N  + G  K+        L  D I  G          L+ 
Sbjct: 489 ALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVD 548

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C   K+    EL+ ++   G+ P+   +N L++  C+      V E+   M  +  AP
Sbjct: 549 GYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAP 608

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I  LC S+K  EA  +  ++K +G  PD V + T+I G CK+G L  A  ++
Sbjct: 609 NIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLF 668

Query: 328 FEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             M  +  +     TYN +I  +    N++ A RL  EM   G      TY  LI G C 
Sbjct: 669 RGMEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCK 728

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  ++ Y    E  +KG    + T+  ++   C E K+
Sbjct: 729 TGNVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKV 767



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 133/279 (47%), Gaps = 10/279 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--IQ 207
           + G     F   S L+++G  G      + L        +++   L + L+E  Y+  ++
Sbjct: 112 KQGFKHTLFTYKSMLQKLGFHGKFNEMENLL--------SEMRSNLDNTLLEGVYVEAMR 163

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +   GK+ E  +   ++      P   ++N +++   E   F +  ++   M  +    
Sbjct: 164 FYGRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVES 223

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +TY   I   C++ +   A R+  ++   G   + V Y TV+ G  + G    AR+++
Sbjct: 224 DVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELF 283

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+   L P+  T+N ++H  C+   + E++RL  ++L +G      T+N  I GLC  
Sbjct: 284 DEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKE 343

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G  D A  L   ++++G+  DV+TYNT+I G C++ ++V
Sbjct: 344 GSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVV 382



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 125/276 (45%), Gaps = 26/276 (9%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
           G I+EA   F ++       S+ ++N+ +                + L+E GY  QA   
Sbjct: 169 GKIQEAVDTFERMDLFNCDPSVYSYNAIM----------------NILVEFGYFNQA--- 209

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
                  +++  ++ +  +  +   +   I  FC          LL  M       +   
Sbjct: 210 -------HKVYMRMKDKKVESDVYTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVA 262

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  V+ G  +      A  +F+++ E    PD   +  ++H LCK G++ ++ +++ +++
Sbjct: 263 YCTVVTGFYEFGDNDRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVL 322

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ PN +T+N  I G C+  +L+ A RL   +  +G     VTYNT+I GLC   R  
Sbjct: 323 KRGVCPNLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVV 382

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           EA     +M   G   +  TYN++I GYCK+G +V+
Sbjct: 383 EAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVD 418


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 106/366 (28%), Positives = 182/366 (49%), Gaps = 13/366 (3%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---L 129
           P +    L   +  L S R F      +G +P++ + N+L  +L      + A+     +
Sbjct: 119 PAYNAVLLALSDASLPSARRFLSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDM 178

Query: 130 DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDR 188
              G +PN  +    +   C +G ++ A    S ++E G    ++ T+NS + G  K  R
Sbjct: 179 RGAGCAPNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGR 238

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            +   K++ +++  G          L+  +C  G + E   +  ++ + GLVP+   F  
Sbjct: 239 MEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTS 298

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C+  N  +   L+  M  R    +  T+  +I+G CK     +A     ++++ G
Sbjct: 299 LIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P  V Y  +I+G CK+G +  AR++  EM  K + P+  TY+++I GYC++ NL+ A 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +L+++ML KG     +TY++LI GLC   R ++A  LFE M Q G+  D  TY TLI G+
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGH 478

Query: 420 CKEGKI 425
           CKEG +
Sbjct: 479 CKEGNV 484



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 163/338 (48%), Gaps = 12/338 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R    +       P+LV+ N + + L +A   + A    D     G +P+  S    +  
Sbjct: 208 RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 267

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C+ G + E+   FS++ + G+   + T+ S +    K    +    L   + E G    
Sbjct: 268 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 327

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  FC  G + +    + ++ + G+ P    +N LI+ +C+        EL+ 
Sbjct: 328 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 387

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M A+   PD  TY  +I+G CK      A+++   + ++G +PD + Y+++I GLC+  
Sbjct: 388 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 447

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L DA +++  M+  G+ P+E+TY ++I G+C+  N+E+A  LH EM+ KG     VTY+
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            LI GL    RT EA+ L  ++  +    D I Y+ L+
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 545



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 170/353 (48%), Gaps = 27/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   L  +  +A   + A+  +      G   N  +    I   C+ G +++A
Sbjct: 288 GLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDA 347

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             A  ++++ G+  S+  +N+ + G  K+ R DL  +L           D++    +I  
Sbjct: 348 LLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISG 407

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G +   ++L +++L+ G++P+   ++ LI   CE+K      EL   M+     PD
Sbjct: 408 YCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPD 467

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I+G CK     +A  + +++  +G +PD V Y+ +I+GL K     +A ++ F
Sbjct: 468 EFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLF 527

Query: 329 EMIHKGLLPNEYTYNSM---------------IHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           ++ H+  +P+   Y+++               + G+C    ++EA ++++ MLD+ +   
Sbjct: 528 KLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLD 587

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              Y+ LI G C  G   +A    ++M + G   +  +  +L++G  +EG +V
Sbjct: 588 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVV 640


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/354 (31%), Positives = 179/354 (50%), Gaps = 38/354 (10%)

Query: 80  LKQQNNVLLSIRFFQWL-HSHYGFS-PDLVSCNVLFDSLVEAR----AFKVAMDFLDSTG 133
           L+   +V +S+ FF+W+  SH G S  +  +CN L  +LV+AR    A+++  D L    
Sbjct: 41  LQVIKDVDVSLFFFRWVTRSHRGESIHNNFTCNCLLRTLVKARRHHQAYQIFRDELLGQH 100

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
              N  +    I   C++G +E AF   +++KE G    + T +S               
Sbjct: 101 CDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERGHSPDVVTHSS--------------- 145

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
                      ++QA CN G +S   +  R+ +E    P++  FN L+   C+       
Sbjct: 146 -----------IVQALCNTGNLSRAMQYFRESVE--CAPDSVLFNILVHGLCKANQLSEA 192

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +++  M  R   PD  TY  +I+GLCKS +  EA ++   + +R   P+ V Y T+I+G
Sbjct: 193 RQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYG 252

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLHKEMLDKGY-G 371
            CK G  G A ++   MI  G  P+  T+NS+I G+C+   +++A + LH  ++ KG   
Sbjct: 253 YCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLH--LMKKGLCA 310

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              VTYN LI+GLC  GR +EA  L  EM  +GI  D+ITYN+LI  +C+  +I
Sbjct: 311 PNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQI 364



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 168/347 (48%), Gaps = 12/347 (3%)

Query: 91  RFFQWLH--SHYGFSPDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELYIQC 147
           R FQ L      G SPD+V+ + +  +L        AM  F +S   +P+     + +  
Sbjct: 123 RAFQLLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRESVECAPDSVLFNILVHG 182

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---------TDLVWKLYHD 198
           LC++  + EA     ++ E G+   + T+NS + G  K  R         T +  K+  +
Sbjct: 183 LCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPN 242

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           L+    LI  +C  G     ++L+ ++++ G  P+   FN LIS FC+K    +  E+LH
Sbjct: 243 LVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLH 302

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M     AP+  TY  +I+GLC + +  EA  + +++  RG +PD + Y ++I   C+  
Sbjct: 303 LMKKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNF 362

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A ++   M+ +G++P+  +Y ++     + +  +EA  L   M D G      T+N
Sbjct: 363 QIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFN 422

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +L+ GLC   R DEA HL   M + G      TY  L+ G CK G++
Sbjct: 423 SLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRV 469



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 155/346 (44%), Gaps = 12/346 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R  Q+       +PD V  N+L   L +A     A   ++     G  P+  +    I  
Sbjct: 158 RAMQYFRESVECAPDSVLFNILVHGLCKANQLSEARQMIEEMSERGIVPDVVTYNSLIDG 217

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC+S  +EEA      + +  V  ++ T+N+ + G  K   T L  +L   +I+SG    
Sbjct: 218 LCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPD 277

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  FC   K+ +  E+L  + +    P    +N LIS  C+        ELL 
Sbjct: 278 VVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEACELLS 337

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  R   PD  TY  +I   C++ +  +A+++ N + ERG +PD + Y T+   L K  
Sbjct: 338 EMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYCTLAVALLKSE 397

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A  +   M   G +PN +T+NS++ G C    L+EA+ L   M   G      TY 
Sbjct: 398 RFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYE 457

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            L+ GLC  GR D+A  +   M  +GI   V +  T++    +EGK
Sbjct: 458 VLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGK 503



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 145/315 (46%), Gaps = 12/315 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G  PD+V+ N L D L ++   + A   L++       PN  +    I   C++G  
Sbjct: 200 SERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGCT 259

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
             A     ++ + G    + T+NS + G  +  + D   ++ H         +L+    L
Sbjct: 260 GLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVL 319

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C+ G+ +E  ELL ++   G++P+   +N LI  FC      +  ++ + MV R  
Sbjct: 320 ISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGV 379

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  +Y  +   L KS +  EA+ + +++ + G +P+   + +++ GLC    L +AR 
Sbjct: 380 IPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARH 439

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M   G  P   TY  ++ G C+   +++AK +   M+ +G      +  T++  L 
Sbjct: 440 LLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLA 499

Query: 386 LHGRTDEAYHLFEEM 400
             G+ D A H F+++
Sbjct: 500 REGKQDLALHYFDQV 514


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 170/336 (50%), Gaps = 13/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P + +  VL  SL  +     A++    ++ TG  PN ++  + I  LC     E+A   
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLV-----WKLYHDLIESGYLIQAFCN 211
             ++ E G+  ++ T+N+ + G  K     D  D+V      KL  +      LI+ +C 
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              V +   +L ++LE  ++P+   +N LI   C   NF     LL  M  R   PD +T
Sbjct: 441 -SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ LCKS++  EA  +F+ L+++G  P+ VMYT +I G CK G + +A  M  +M+
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            K  LPN  T+N++IHG C    L+EA  L ++M+  G   T  T   LI  L   G  D
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            AY  F++M   G   D  TY T IQ YC+EG++++
Sbjct: 620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD 655



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 3/245 (1%)

Query: 183 CIKIDRTDLVWKLYHDLIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           C K+++ D  ++L + LI   Y  L+ +    G V E  ++  ++LED + P    +NK+
Sbjct: 166 CRKMNK-DERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++ +C+  N    ++ +  +V     PD FTY  +I G C+ +    A++VFN++  +G 
Sbjct: 225 VNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGC 284

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
             + V YT +IHGLC    + +A  ++ +M      P   TY  +I   C  +   EA  
Sbjct: 285 RRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALN 344

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L KEM + G      TY  LI  LC   + ++A  L  +M +KG+  +VITYN LI GYC
Sbjct: 345 LVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYC 404

Query: 421 KEGKI 425
           K G I
Sbjct: 405 KRGMI 409



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 188/426 (44%), Gaps = 46/426 (10%)

Query: 17  RNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQT--LLSDIPSFNFNDPL 74
           R F + +  LRNL  E  +S  +   +   +     +KP W ++  L S + + +   P 
Sbjct: 40  RQFCSVSPLLRNLPEEESDSMSVPHRLLSIL-----SKPNWHKSPSLKSMVSAIS---PS 91

Query: 75  FFREFLKQQNNVLLSIRFFQWL-------HSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
                     +   ++ F  W+       HS Y ++  L    +L ++      FK+ + 
Sbjct: 92  HVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLT---LLINNGYVGVVFKIRLL 148

Query: 128 FL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
            +   DS G +       LY+  LC     +E F    +LK   + G    +N+ L    
Sbjct: 149 MIKSCDSVGDA-------LYVLDLCRKMNKDERF----ELKYKLIIG---CYNTLLNSLA 194

Query: 185 KIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           +    D + ++Y +++E            ++  +C  G V E  + + +++E GL P+  
Sbjct: 195 RFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFF 254

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +  LI  +C++K+     ++ + M  +    +   Y  +I+GLC +R+  EA  +F  +
Sbjct: 255 TYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKM 314

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           K+    P    YT +I  LC      +A  +  EM   G+ PN +TY  +I   C     
Sbjct: 315 KDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKF 374

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           E+A+ L  +ML+KG     +TYN LI G C  G  ++A  + E M  + +  +  TYN L
Sbjct: 375 EKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNEL 434

Query: 416 IQGYCK 421
           I+GYCK
Sbjct: 435 IKGYCK 440



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 150/329 (45%), Gaps = 13/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++++ N L +   +    + A+D    ++S   SPN  +    I+  C+S  + +A
Sbjct: 388 GLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCKSN-VHKA 446

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +K+ E  V   + T+NS + G  +    D  ++L   + + G          +I +
Sbjct: 447 MGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDS 506

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E  +L   + + G+ P    +  LI  +C+         +L  M+++N  P+
Sbjct: 507 LCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPN 566

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + T+  +I+GLC   K  EA  +   + + G  P     T +IH L K G    A   + 
Sbjct: 567 SLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQ 626

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G  P+ +TY + I  YCR   L +A+ +  +M + G      TY++LI G    G
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLG 686

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           +T+ A+ + + M   G      T+ +LI+
Sbjct: 687 QTNFAFDVLKRMRDTGCEPSQHTFLSLIK 715



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 135/343 (39%), Gaps = 47/343 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D    +  F  A   +  ++  G  P+  +    I  LC+S  +EEA   
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDL 519

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           F  L++ GV  ++  + +                          LI  +C  GKV E + 
Sbjct: 520 FDSLEQKGVNPNVVMYTA--------------------------LIDGYCKAGKVDEAHL 553

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +L ++L    +P +  FN LI   C        + L   MV     P   T   +I+ L 
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLL 613

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K      AY  F  +   G  PD   YTT I   C+ G L DA  M  +M   G+ P+ +
Sbjct: 614 KDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLF 673

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI---------------AGLC 385
           TY+S+I GY  +     A  + K M D G   +  T+ +LI                 LC
Sbjct: 674 TYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELC 733

Query: 386 LHGRT---DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                   D    L E+M +  +  +  +Y  LI G C+ G +
Sbjct: 734 AMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNL 776



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/473 (20%), Positives = 176/473 (37%), Gaps = 84/473 (17%)

Query: 31  IETKESQQL------YTEIAKQVCKITRTKPR------WEQTLLSDIPSFNFNDPLFFRE 78
           +E  ES++L      Y E+ K  CK    K         E+ +L D+ ++N        +
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNS-----LID 470

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFS 135
              +  N   + R    ++   G  PD  +   + DSL +++  + A D  DS    G +
Sbjct: 471 GQCRSGNFDSAYRLLSLMNDR-GLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVN 529

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN       I   C++G ++EA     K+       +  T+N+ + G     +      L
Sbjct: 530 PNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLL 589

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +++ G          LI     DG     Y   +Q+L  G  P+   +   I  +C 
Sbjct: 590 EEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCR 649

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVING---------------------------- 278
           +       +++  M     +PD FTY  +I G                            
Sbjct: 650 EGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHT 709

Query: 279 ----------------------LCKSRKRLE---AYRVFNDLKERGYVPDTVMYTTVIHG 313
                                 LC     +E      +   + E    P+   Y  +I G
Sbjct: 710 FLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILG 769

Query: 314 LCKMGWLGDARKMWFEMI-HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           +C++G L  A K++  M  ++G+ P+E  +N+++   C++    EA ++  +M+  G+  
Sbjct: 770 ICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLP 829

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +   LI GL   G  +    +F+ + Q G + D + +  +I G  K+G +
Sbjct: 830 QLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLV 882



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 78/340 (22%), Positives = 142/340 (41%), Gaps = 48/340 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + +  +L   L++   F  A        S+G  P+ ++   +IQ  C  G + +A
Sbjct: 597 GLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDA 656

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               +K++E GV   + T++S                          LI+ + + G+ + 
Sbjct: 657 EDMMAKMRENGVSPDLFTYSS--------------------------LIKGYGDLGQTNF 690

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKK------------------NFGRVSELLHT 259
            +++L+++ + G  P    F  LI    E K                   F  V ELL  
Sbjct: 691 AFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKGSEPELCAMSNMMEFDTVVELLEK 750

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMG 318
           MV  +  P+  +YE++I G+C+      A +VF+ + +  G  P  +++  ++   CK+ 
Sbjct: 751 MVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQRNEGISPSELVFNALLSCCCKLK 810

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A K+  +MI  G LP   +   +I G  +    E    + + +L  GY E  + + 
Sbjct: 811 KHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNLLQCGYYEDELAWK 870

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +I G+   G  +  Y LF  M + G      TY+ LI+G
Sbjct: 871 IIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 160/307 (52%), Gaps = 11/307 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGL--IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           +D +   P+  +L + I C C S       AF     + ++G+  +  T+++ L G    
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            +     KL+ ++++ GY         +I   C  G  +   +LL+++ E G  P    +
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVY 120

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           + +I   C+ K      E L  MV R  +P+  TY  +++G C   +  EA  +F  + E
Sbjct: 121 STIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE 180

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           R  +PDTV +  ++ GL K G + +A+ ++  MI KG+ PN  TYN+++ GYC    ++E
Sbjct: 181 RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDE 240

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A++L   M+ KG   +  +YN LI G C  GR DEA  L  EM+ K +  D +TY+TL++
Sbjct: 241 AQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMK 300

Query: 418 GYCKEGK 424
           G+C++G+
Sbjct: 301 GFCQDGR 307



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 166/340 (48%), Gaps = 22/340 (6%)

Query: 104 PDLVSCNVLFDSLVEAR------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           PD+ +  +L +    +       AF V  +     G  PN  +    +  L     I +A
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMF-KLGLQPNHVTFSTLLNGLSSKAKIIDA 66

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++ +MG    + T+++ + G  K+  T +  +L   + E G          +I +
Sbjct: 67  VKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDS 126

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
            C D  ++E  E L +++  G+ P    ++ ++  FC   N GR +E   L   MV RN 
Sbjct: 127 LCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFC---NLGRSNEATSLFKQMVERNV 183

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  T+  +++GL K    LEA  VF  + E+G  P+   Y  ++ G C    + +A+K
Sbjct: 184 MPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQK 243

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M+ KG  P+  +YN +I G+C+   ++EAK L  EM  K     TVTY+TL+ G C
Sbjct: 244 LFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFC 303

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             GR  +A  L EEM   G+  D++TY+ ++ G CK+G +
Sbjct: 304 QDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHL 343



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 168/349 (48%), Gaps = 30/349 (8%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSP 136
           L  +  ++ +++ F  +    G+ PD+++ + + + L +  +  +A+  L   +  G  P
Sbjct: 57  LSSKAKIIDAVKLFDEM-VKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKP 115

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N       I  LC+  LI EA    S++   G+  ++ T++S L G              
Sbjct: 116 NVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHG-------------- 161

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                       FCN G+ +E   L +Q++E  ++P+   FN L+    ++        +
Sbjct: 162 ------------FCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCV 209

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             TM+ +   P+  TY  +++G C   +  EA ++FN +  +G  P    Y  +I G CK
Sbjct: 210 FETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCK 269

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +A+ +  EM HK L P+  TY++++ G+C+    ++A++L +EM   G     +T
Sbjct: 270 SGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMT 329

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y+ ++ GLC  G  DEA+ L + M +  I  ++  Y  LIQG C  GK+
Sbjct: 330 YSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKL 378



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 154/339 (45%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V  + + DSL + +    AM+FL      G SPN  +    +   C  G   EA
Sbjct: 112 GCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEA 171

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ E  V     T+N  + G  K         ++  +IE G          L+  
Sbjct: 172 TSLFKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDG 231

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C+  ++ E  +L   ++  G  P   ++N LI   C+         LL  M  +   PD
Sbjct: 232 YCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKALTPD 291

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G C+  +  +A ++  +++  G +PD + Y+ V+ GLCK G L +A ++  
Sbjct: 292 TVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLK 351

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M    + PN + Y  +I G C    LE A+ L   +  KG     VTY  +I+GL   G
Sbjct: 352 AMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGG 411

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            ++EA  LF +MA  G   +  TYN +IQG+ + G   N
Sbjct: 412 LSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSN 450



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 111/197 (56%), Gaps = 2/197 (1%)

Query: 232 PENTAFNKLISRFCEKKN--FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           P+      LI+ FC   +  F     +L  M      P++ T+  ++NGL    K ++A 
Sbjct: 8   PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           ++F+++ + GY PD + Y+T+I+GLCKMG    A ++  +M  KG  PN   Y+++I   
Sbjct: 68  KLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSL 127

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   + EA     EM+++G     VTY++++ G C  GR++EA  LF++M ++ +  D 
Sbjct: 128 CKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDT 187

Query: 410 ITYNTLIQGYCKEGKIV 426
           +T+N L+ G  KEG I+
Sbjct: 188 VTFNILVDGLSKEGMIL 204



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 21/174 (12%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEE 156
           YG  PDL++ +++ D L +      A + L +   +   PN     + IQ +C  G +E 
Sbjct: 321 YGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEA 380

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   FS L   G+   + T+   + G +K   ++   +L+ D+   G L         IQ
Sbjct: 381 ARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQ 440

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAF---------NKLISRFCEKKNFGR 252
            F  +G  S    L+ +++  G   +++ F         +++IS F    + GR
Sbjct: 441 GFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSDLESRDEIISLFMHGSSQGR 494


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 169/346 (48%), Gaps = 15/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F Q LH+H    P+L + N +  +L +      A   L      G S N  +  ++I+ L
Sbjct: 174 FDQMLHTH--VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL 231

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--- 205
           CE+G + EA      ++   V   + T+N+ + G  K             ++  G L   
Sbjct: 232 CEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 290

Query: 206 ------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 I  +C    V E  ELL+  +  G VP+   +  LI+  C + +  R  EL + 
Sbjct: 291 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 350

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
             A+   PD   Y  ++ GLC     L A +V N++ E G  PD   Y  VI+GLCKMG 
Sbjct: 351 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 410

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA  +  + I KG LP+ +T+N++I GYC+   L+ A +L + M + G    T+TYN+
Sbjct: 411 ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 470

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++ GLC  G+ +E    F+EM  KG   + ITYN LI+ +C+  K+
Sbjct: 471 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM 516



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 156/336 (46%), Gaps = 11/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCLCESGLIEEAF 158
           G S +L + N+    L EA     A+  +D       P+  +    I+ LC+  + +EA 
Sbjct: 216 GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAM 275

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++   G      T+N+ + G  KI       +L  D +  G+         LI   
Sbjct: 276 HYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 335

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C +G V    EL  +    G+ P+   +N L+   C +       ++++ M      PD 
Sbjct: 336 CAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI 395

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VINGLCK     +A  V ND   +GY+PD   + T+I G CK   L  A ++   
Sbjct: 396 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 455

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G+ P+  TYNS+++G C+   + E     +EM+ KG     +TYN LI   C   +
Sbjct: 456 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 515

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA  +  +M+Q+G+  D +++NTLI G+C+ G +
Sbjct: 516 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 551



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 13/309 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MD       +P  N++   +  L ++   ++A   + ++   GV   + T    L     
Sbjct: 76  MDLFACPPAAPAYNAI---MDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCL 132

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCN-------DGKVSEGYELLRQVLEDGLVPENTAFN 238
             R  +  +L   L   G +  A+C         G   +  +L  Q+L   + P   AFN
Sbjct: 133 TARPHIALRLLRALPHRGAV--AYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFN 190

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           K++   C++ +      LL  ++ R  + + FTY   I GLC++ +  EA R+ + ++  
Sbjct: 191 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY 250

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
             VPD V Y T+I GLCK     +A      M+++G LP+++TYN++I GYC+I  ++EA
Sbjct: 251 A-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 309

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L K+ + KG+    VTY +LI GLC  G  + A  LF E   KGI  D++ YN+L++G
Sbjct: 310 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKG 369

Query: 419 YCKEGKIVN 427
            C +G I++
Sbjct: 370 LCLQGLILH 378



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 29/322 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N + D   +    + A + L      GF P+  +    I  LC  G +E A
Sbjct: 285 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F++ +  G+   I  +NS                          L++  C  G +  
Sbjct: 345 LELFNEAQAKGIKPDIVVYNS--------------------------LVKGLCLQGLILH 378

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +++ ++ E+G  P+   +N +I+  C+  N    + +++  + +   PD FT+  +I+
Sbjct: 379 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 438

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK  K   A ++   + E G  PDT+ Y +V++GLCK G + +  + + EMI KG  P
Sbjct: 439 GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHP 498

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TYN +I  +CR + +EEA ++  +M  +G     V++NTLI G C +G  + AY LF
Sbjct: 499 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 558

Query: 398 EEMAQKGIFRDVITYNTLIQGY 419
           +++ +KG      T+NTLI  +
Sbjct: 559 QKLEEKGYSATADTFNTLIGAF 580



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD V+   L + L      + A++  +   + G  P+       ++ LC  GLI  A
Sbjct: 320 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 379

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
               +++ E G    I+T+N  + G  K+        + +D I  GYL         I  
Sbjct: 380 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 439

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+    +L+ ++ E G+ P+   +N +++  C+      V+E    M+ +   P+
Sbjct: 440 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPN 499

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I   C+S K  EA +V   + + G  PD V + T+I+G C+ G L  A  ++ 
Sbjct: 500 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 559

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++  KG      T+N++I  +    N+  A+++  EML KG+   + TY  LI G C   
Sbjct: 560 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTA 619

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
             D AY    EM +KG    + T+  +I
Sbjct: 620 NVDRAYMHLVEMIKKGFIPSMSTFGRVI 647



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+A+   G++ +  +   ++      P   A+N ++    +     +  ++   M+A   
Sbjct: 57  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 116

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +PD  T+   +   C + +   A R+   L  RG     V Y TV+ GL   G   DAR+
Sbjct: 117 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQ 172

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M+H  + PN   +N ++H  C+  ++ EA  L  +++ +G      TYN  I GLC
Sbjct: 173 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 232

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             GR  EA  L + M    +  DV+TYNTLI+G CK+ 
Sbjct: 233 EAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKS 269



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 12/260 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N++ + L +        V M+     G+ P+  +    I   C+   ++ A
Sbjct: 390 GCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSA 449

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ E G+     T+NS L G  K  + + V + + ++I  G          LI+ 
Sbjct: 450 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN 509

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   K+ E  +++ ++ ++GL P+  +FN LI  FC   +      L   +  +  +  
Sbjct: 510 FCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSAT 569

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I           A ++F+++  +G+  D+  Y  +I G CK   +  A     
Sbjct: 570 ADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLV 629

Query: 329 EMIHKGLLPNEYTYNSMIHG 348
           EMI KG +P+  T+  +I+ 
Sbjct: 630 EMIKKGFIPSMSTFGRVINS 649



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)

Query: 100 YGFSPDLVSCNVLFDSLVEA-RAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEE 156
           YG +PD ++ N + + L +A +  +V   F +    G  PNP +  + I+  C S  +EE
Sbjct: 459 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 518

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     K+ + G                          L+ D +    LI  FC +G + 
Sbjct: 519 ASKVIVKMSQEG--------------------------LHPDAVSFNTLIYGFCRNGDLE 552

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
             Y L +++ E G       FN LI  F  K N     ++   M+++    D++TY  +I
Sbjct: 553 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 612

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G CK+     AY    ++ ++G++P    +  VI+ L     +  A  +   M+  G++
Sbjct: 613 DGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVV 672

Query: 337 P 337
           P
Sbjct: 673 P 673


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 164/335 (48%), Gaps = 12/335 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P  V  N L  S+ + +     +     +DS G  P+  +L + I  LC    ++
Sbjct: 38  HKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAIVINSLCHLNRVD 97

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            AF A +K+ ++G      T+ + + G     +      L+  +I  G+         LI
Sbjct: 98  FAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLI 157

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C D +V+E + +  +++  G+ P    +N LI   C+   +  V+ L++ MV     
Sbjct: 158 NGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIM 217

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD FT   V++ LCK     EA+ V + +  RG  P+ V Y  ++ G C    +  A K+
Sbjct: 218 PDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKV 277

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+HK  + N  +YN++I+GYC+I ++++A  L +EM  +     TVTYNTLI GLC 
Sbjct: 278 FDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCH 337

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR  +A  LF EM  +G   D++TY TL    CK
Sbjct: 338 VGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCK 372



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 166/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +   L   L        A+   D     GF PN  +    I  LC+   + EA
Sbjct: 110 GHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEGFQPNVVTYGTLINGLCKDRQVTEA 169

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+  +I T+NS + G  K+     V  L +++++S  +         + A
Sbjct: 170 FNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDA 229

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V+E ++++  ++  G+ P    +N L+   C +       ++  TMV ++   +
Sbjct: 230 LCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVAN 289

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +   +A  +F ++  +   P+TV Y T+IHGLC +G L DA  ++ 
Sbjct: 290 VISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFH 349

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G +P+  TY ++    C+  +L++A  L K +    +      Y T++ G+C  G
Sbjct: 350 EMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAG 409

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             ++A  LF  ++ KG+  +V TYN +I G CK+G
Sbjct: 410 ELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQG 444



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+ N L   L    E +     M+ +  +   P+  +L   +  LC+ G++ EA
Sbjct: 180 GISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEA 239

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 +   GV  ++ T+N+ + G    +  D+  K++          ++I    LI  
Sbjct: 240 HDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLING 299

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C    V +   L  ++    L P    +N LI   C          L H MVAR + PD
Sbjct: 300 YCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPD 359

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  + + LCK+R   +A  +   ++   + PD  +YTT++ G+C+ G L DAR ++ 
Sbjct: 360 LVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFS 419

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL PN +TYN MIHG C+   L EA +L  EM   G      TYN +  G   + 
Sbjct: 420 NLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNN 479

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                  L EEM  +G   DV T   L+     +G
Sbjct: 480 EALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDG 514



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 27/337 (8%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  PD+ + N+L +S    R    AF V    L   GF P+  +    +  LC      
Sbjct: 610 FGIPPDVYTLNILINSFCHLRRLGYAFSVLAKLL-KLGFQPDVVTYGTLMNGLC------ 662

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------I 206
                  K+   G+   I T+NS +     +     V  L ++++ S  +         +
Sbjct: 663 -------KMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVV 715

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            A C +G ++  ++++  +++ G+ P+   +  L+   C +       ++  TMV +   
Sbjct: 716 DALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCV 775

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +Y  +ING C+ ++  +A  +   +  +G + DTV Y T+IHGLC +G L  A  +
Sbjct: 776 PNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIAL 835

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM+  G +P+  TY  ++   C+  +L EA  L K +         + YN  I G+C 
Sbjct: 836 FHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCR 895

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G  + A  LF  ++ KG+  DV TYN +I G CK G
Sbjct: 896 AGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRG 932



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 157/337 (46%), Gaps = 9/337 (2%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P  V    L  S+ + + +   +     +DS G  P+  +L + I   
Sbjct: 569 FNRMLHMHP--PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSF 626

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C    +  AF   +KL ++G    + T+ + + G  K+    +   +  D+     LI A
Sbjct: 627 CHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKM----ITKGISPDIFTYNSLIHA 682

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  +      LL +++   ++P    F+ ++   C++       +++  M+ R   PD
Sbjct: 683 LCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPD 742

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C   +  EA +VF+ +  +G VP+   Y  +I+G C++  +  A  +  
Sbjct: 743 VVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLE 802

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +GL+ +  TYN++IHG C +  L+ A  L  EM+  G     VTY  L+  LC + 
Sbjct: 803 QMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNH 862

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA  L + +    +  D++ YN  I G C+ G++
Sbjct: 863 HLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGEL 899



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 103/211 (48%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + E      ++L     P    FN+L++   + K+   +  L   M +    PD +T   
Sbjct: 26  LDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTLAI 85

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VIN LC   +   A+     + + G+ PD   +TT+I GLC  G +G+A  ++ +MI +G
Sbjct: 86  VINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIGEG 145

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN  TY ++I+G C+   + EA  +  EM+ KG     VTYN+LI GLC         
Sbjct: 146 FQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVT 205

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L  EM    I  DV T NT++   CKEG +
Sbjct: 206 TLMNEMVDSKIMPDVFTLNTVVDALCKEGMV 236



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 105/239 (43%), Gaps = 12/239 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V  + + D+L +     +A D +D     G  P+  +    +   C    ++EA   
Sbjct: 706 PNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKV 765

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F  +   G   +++++N  + G  +I R D    L           D +    LI   C+
Sbjct: 766 FDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCH 825

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++     L  +++  G +P+   +  L+   C+  +      LL  +   N   D   
Sbjct: 826 VGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILV 885

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           Y   I+G+C++ +   A  +F++L  +G  PD   Y  +IHGLCK G L +A K++ +M
Sbjct: 886 YNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKM 944



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 141/369 (38%), Gaps = 88/369 (23%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDLV+   L D L + R    AM  L   + + + P+       +  +C +G +E+A
Sbjct: 355 GQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDA 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FS L   G+  ++ T+N                           +I   C  G ++E
Sbjct: 415 RDLFSNLSSKGLQPNVWTYN--------------------------IMIHGLCKQGLLAE 448

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI- 276
             +L  ++ ++G  P +  +N +   F       R  ELL  M+AR  + D  T   ++ 
Sbjct: 449 ASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVG 508

Query: 277 ----NGLCKSRKRL-----------------------------------------EAYRV 291
               +GL +S K++                                         +A   
Sbjct: 509 MLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHFNTLDDALSS 568

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           FN +      P TV +T ++  + KM        +  +M   G+ P+ YT N +I+ +C 
Sbjct: 569 FNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCH 628

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +  L  A  +  ++L  G+    VTY TL+ GLC             +M  KGI  D+ T
Sbjct: 629 LRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC-------------KMITKGISPDIFT 675

Query: 412 YNTLIQGYC 420
           YN+LI   C
Sbjct: 676 YNSLIHALC 684



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 78/404 (19%), Positives = 148/404 (36%), Gaps = 73/404 (18%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPN 139
           +N V ++++ F  +  H     +++S N L +   + ++   AM   +       +PN  
Sbjct: 268 RNEVDVAVKVFDTM-VHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQELTPNTV 326

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS---------------ALLGCI 184
           +    I  LC  G +++A   F ++   G    + T+ +               ALL  I
Sbjct: 327 TYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAI 386

Query: 185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           +    D   ++Y  +++        C  G++ +  +L   +   GL P    +N +I   
Sbjct: 387 EGSNWDPDIQIYTTILD------GMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGL 440

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C++      S+L   M     +P++ TY  +  G  ++ + L    +  ++  RG+  D 
Sbjct: 441 CKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGFSVD- 499

Query: 305 VMYTTVIHG--------------LCK---------------------------------M 317
           V  TT++ G              LCK                                  
Sbjct: 500 VSTTTLLVGMLSDDGLDQSVKQILCKPSSSSRPSGTQMRSLPPLFLSSSHNSLHSRSPHF 559

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             L DA   +  M+H    P+   +  ++    ++ +      L  +M   G      T 
Sbjct: 560 NTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 619

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           N LI   C   R   A+ +  ++ + G   DV+TY TL+ G CK
Sbjct: 620 NILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCK 663


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 169/346 (48%), Gaps = 15/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F Q LH+H    P+L + N +  +L +      A   L      G S N  +  ++I+ L
Sbjct: 175 FDQMLHTH--VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL 232

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--- 205
           CE+G + EA      ++   V   + T+N+ + G  K             ++  G L   
Sbjct: 233 CEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 291

Query: 206 ------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 I  +C    V E  ELL+  +  G VP+   +  LI+  C + +  R  EL + 
Sbjct: 292 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 351

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
             A+   PD   Y  ++ GLC     L A +V N++ E G  PD   Y  VI+GLCKMG 
Sbjct: 352 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 411

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA  +  + I KG LP+ +T+N++I GYC+   L+ A +L + M + G    T+TYN+
Sbjct: 412 ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 471

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++ GLC  G+ +E    F+EM  KG   + ITYN LI+ +C+  K+
Sbjct: 472 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM 517



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 156/336 (46%), Gaps = 11/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCLCESGLIEEAF 158
           G S +L + N+    L EA     A+  +D       P+  +    I+ LC+  + +EA 
Sbjct: 217 GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAM 276

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++   G      T+N+ + G  KI       +L  D +  G+         LI   
Sbjct: 277 HYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 336

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C +G V    EL  +    G+ P+   +N L+   C +       ++++ M      PD 
Sbjct: 337 CAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI 396

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VINGLCK     +A  V ND   +GY+PD   + T+I G CK   L  A ++   
Sbjct: 397 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 456

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G+ P+  TYNS+++G C+   + E     +EM+ KG     +TYN LI   C   +
Sbjct: 457 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 516

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA  +  +M+Q+G+  D +++NTLI G+C+ G +
Sbjct: 517 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 552



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 13/309 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MD       +P  N++   +  L ++   ++A   + ++   GV   + T    L     
Sbjct: 77  MDLFACPPAAPAYNAI---MDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCL 133

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCN-------DGKVSEGYELLRQVLEDGLVPENTAFN 238
             R  +  +L   L   G +  A+C         G   +  +L  Q+L   + P   AFN
Sbjct: 134 TARPHIALRLLRALPHRGAV--AYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFN 191

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           K++   C++ +      LL  ++ R  + + FTY   I GLC++ +  EA R+ + ++  
Sbjct: 192 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY 251

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
             VPD V Y T+I GLCK     +A      M+++G LP+++TYN++I GYC+I  ++EA
Sbjct: 252 A-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 310

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L K+ + KG+    VTY +LI GLC  G  + A  LF E   KGI  D++ YN+L++G
Sbjct: 311 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKG 370

Query: 419 YCKEGKIVN 427
            C +G I++
Sbjct: 371 LCLQGLILH 379



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 29/322 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N + D   +    + A + L      GF P+  +    I  LC  G +E A
Sbjct: 286 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 345

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F++ +  G+   I  +NS                          L++  C  G +  
Sbjct: 346 LELFNEAQAKGIKPDIVVYNS--------------------------LVKGLCLQGLILH 379

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +++ ++ E+G  P+   +N +I+  C+  N    + +++  + +   PD FT+  +I+
Sbjct: 380 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 439

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK  K   A ++   + E G  PDT+ Y +V++GLCK G + +  + + EMI KG  P
Sbjct: 440 GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHP 499

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TYN +I  +CR + +EEA ++  +M  +G     V++NTLI G C +G  + AY LF
Sbjct: 500 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 559

Query: 398 EEMAQKGIFRDVITYNTLIQGY 419
           +++ +KG      T+NTLI  +
Sbjct: 560 QKLEEKGYSATADTFNTLIGAF 581



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD V+   L + L      + A++  +   + G  P+       ++ LC  GLI  A
Sbjct: 321 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 380

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
               +++ E G    I+T+N  + G  K+        + +D I  GYL         I  
Sbjct: 381 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 440

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+    +L+ ++ E G+ P+   +N +++  C+      V+E    M+ +   P+
Sbjct: 441 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPN 500

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I   C+S K  EA +V   + + G  PD V + T+I+G C+ G L  A  ++ 
Sbjct: 501 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 560

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++  KG      T+N++I  +    N+  A+++  EML KG+   + TY  LI G C   
Sbjct: 561 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTA 620

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
             D AY    EM +KG    + T+  +I
Sbjct: 621 NVDRAYMHLVEMIKKGFIPSMSTFGRVI 648



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 106/218 (48%), Gaps = 5/218 (2%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+A+   G++ +  +   ++      P   A+N ++    +     +  ++   M+A   
Sbjct: 58  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 117

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +PD  T+   +   C + +   A R+   L  RG     V Y TV+ GL   G   DAR+
Sbjct: 118 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQ 173

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M+H  + PN   +N ++H  C+  ++ EA  L  +++ +G      TYN  I GLC
Sbjct: 174 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 233

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             GR  EA  L + M    +  DV+TYNTLI+G CK+ 
Sbjct: 234 EAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKS 270



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/260 (22%), Positives = 114/260 (43%), Gaps = 12/260 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N++ + L +        V M+     G+ P+  +    I   C+   ++ A
Sbjct: 391 GCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSA 450

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ E G+     T+NS L G  K  + + V + + ++I  G          LI+ 
Sbjct: 451 LQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIEN 510

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   K+ E  +++ ++ ++GL P+  +FN LI  FC   +      L   +  +  +  
Sbjct: 511 FCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSAT 570

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I           A ++F+++  +G+  D+  Y  +I G CK   +  A     
Sbjct: 571 ADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLV 630

Query: 329 EMIHKGLLPNEYTYNSMIHG 348
           EMI KG +P+  T+  +I+ 
Sbjct: 631 EMIKKGFIPSMSTFGRVINS 650



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)

Query: 100 YGFSPDLVSCNVLFDSLVEA-RAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEE 156
           YG +PD ++ N + + L +A +  +V   F +    G  PNP +  + I+  C S  +EE
Sbjct: 460 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 519

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     K+ + G                          L+ D +    LI  FC +G + 
Sbjct: 520 ASKVIVKMSQEG--------------------------LHPDAVSFNTLIYGFCRNGDLE 553

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
             Y L +++ E G       FN LI  F  K N     ++   M+++    D++TY  +I
Sbjct: 554 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 613

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G CK+     AY    ++ ++G++P    +  VI+ L     +  A  +   M+  G++
Sbjct: 614 DGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVV 673

Query: 337 P 337
           P
Sbjct: 674 P 674


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 108/346 (31%), Positives = 169/346 (48%), Gaps = 15/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F Q LH+H    P+L + N +  +L +      A   L      G S N  +  ++I+ L
Sbjct: 177 FDQMLHTH--VFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGL 234

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--- 205
           CE+G + EA      ++   V   + T+N+ + G  K             ++  G L   
Sbjct: 235 CEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDD 293

Query: 206 ------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 I  +C    V E  ELL+  +  G VP+   +  LI+  C + +  R  EL + 
Sbjct: 294 FTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNE 353

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
             A+   PD   Y  ++ GLC     L A +V N++ E G  PD   Y  VI+GLCKMG 
Sbjct: 354 AQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGN 413

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA  +  + I KG LP+ +T+N++I GYC+   L+ A +L + M + G    T+TYN+
Sbjct: 414 ISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNS 473

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++ GLC  G+ +E    F+EM  KG   + ITYN LI+ +C+  K+
Sbjct: 474 VLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKM 519



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 156/336 (46%), Gaps = 11/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCLCESGLIEEAF 158
           G S +L + N+    L EA     A+  +D       P+  +    I+ LC+  + +EA 
Sbjct: 219 GMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAM 278

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++   G      T+N+ + G  KI       +L  D +  G+         LI   
Sbjct: 279 HYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGL 338

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C +G V    EL  +    G+ P+   +N L+   C +       ++++ M      PD 
Sbjct: 339 CAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDI 398

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VINGLCK     +A  V ND   +GY+PD   + T+I G CK   L  A ++   
Sbjct: 399 QTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVER 458

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G+ P+  TYNS+++G C+   + E     +EM+ KG     +TYN LI   C   +
Sbjct: 459 MWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNK 518

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA  +  +M+Q+G+  D +++NTLI G+C+ G +
Sbjct: 519 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDL 554



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 155/309 (50%), Gaps = 13/309 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MD       +P  N++   +  L ++   ++A   + ++   GV   + T    L     
Sbjct: 79  MDLFACPPAAPAYNAI---MDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCL 135

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCN-------DGKVSEGYELLRQVLEDGLVPENTAFN 238
             R  +  +L   L   G +  A+C         G   +  +L  Q+L   + P   AFN
Sbjct: 136 TARPHIALRLLRALPHRGAV--AYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFN 193

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           K++   C++ +      LL  ++ R  + + FTY   I GLC++ +  EA R+ + ++  
Sbjct: 194 KVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAY 253

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
             VPD V Y T+I GLCK     +A      M+++G LP+++TYN++I GYC+I  ++EA
Sbjct: 254 A-VPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEA 312

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L K+ + KG+    VTY +LI GLC  G  + A  LF E   KGI  D++ YN+L++G
Sbjct: 313 TELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKG 372

Query: 419 YCKEGKIVN 427
            C +G I++
Sbjct: 373 LCLQGLILH 381



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 155/322 (48%), Gaps = 29/322 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N + D   +    + A + L      GF P+  +    I  LC  G +E A
Sbjct: 288 GCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 347

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F++ +  G+   I  +NS                          L++  C  G +  
Sbjct: 348 LELFNEAQAKGIKPDIVVYNS--------------------------LVKGLCLQGLILH 381

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +++ ++ E+G  P+   +N +I+  C+  N    + +++  + +   PD FT+  +I+
Sbjct: 382 ALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLID 441

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK  K   A ++   + E G  PDT+ Y +V++GLCK G + +  + + EMI KG  P
Sbjct: 442 GYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHP 501

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TYN +I  +CR + +EEA ++  +M  +G     V++NTLI G C +G  + AY LF
Sbjct: 502 NPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLF 561

Query: 398 EEMAQKGIFRDVITYNTLIQGY 419
           +++ +KG      T+NTLI  +
Sbjct: 562 QKLEEKGYSATADTFNTLIGAF 583



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD V+   L + L      + A++  +   + G  P+       ++ LC  GLI  A
Sbjct: 323 GFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHA 382

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
               +++ E G    I+T+N  + G  K+        + +D I  GYL         I  
Sbjct: 383 LQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDG 442

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+    +L+ ++ E G+ P+   +N +++  C+      V+E    M+ +   P+
Sbjct: 443 YCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPN 502

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I   C+S K  EA +V   + + G  PD V + T+I+G C+ G L  A  ++ 
Sbjct: 503 PITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQ 562

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++  KG      T+N++I  +    N+  A+++  EML KG+   + TY  LI G C   
Sbjct: 563 KLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTA 622

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
             D AY    EM +KG    + T+  +I
Sbjct: 623 NVDRAYMHLVEMIKKGFIPSMSTFGRVI 650



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 106/217 (48%), Gaps = 5/217 (2%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+A+   G++ +  +   ++      P   A+N ++    +     +  ++   M+A   
Sbjct: 60  IRAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGV 119

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +PD  T+   +   C + +   A R+   L  RG     V Y TV+ GL   G   DAR+
Sbjct: 120 SPDLHTHTIRLRSFCLTARPHIALRLLRALPHRG----AVAYCTVVCGLYAHGHTHDARQ 175

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M+H  + PN   +N ++H  C+  ++ EA  L  +++ +G      TYN  I GLC
Sbjct: 176 LFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNIWIRGLC 235

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             GR  EA  L + M    +  DV+TYNTLI+G CK+
Sbjct: 236 EAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKK 271



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/241 (24%), Positives = 103/241 (42%), Gaps = 29/241 (12%)

Query: 100 YGFSPDLVSCNVLFDSLVEA-RAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEE 156
           YG +PD ++ N + + L +A +  +V   F +    G  PNP +  + I+  C S  +EE
Sbjct: 462 YGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 521

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     K+ + G                          L+ D +    LI  FC +G + 
Sbjct: 522 ASKVIVKMSQEG--------------------------LHPDAVSFNTLIYGFCRNGDLE 555

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
             Y L +++ E G       FN LI  F  K N     ++   M+++    D++TY  +I
Sbjct: 556 GAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLI 615

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G CK+     AY    ++ ++G++P    +  VI+ L     +  A  +   M+  G++
Sbjct: 616 DGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVV 675

Query: 337 P 337
           P
Sbjct: 676 P 676


>gi|297806115|ref|XP_002870941.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316778|gb|EFH47200.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 719

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 186/381 (48%), Gaps = 17/381 (4%)

Query: 60  TLLSDIPSFNFNDPLF---FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL 116
           +L+S   +   ND +F    R F+ Q   +  +   F  L S  G++  + +CN L  SL
Sbjct: 143 SLVSTYSNCGSNDSVFDLLIRTFV-QARKLREAYEAFTLLRSK-GYTVSIDACNALIGSL 200

Query: 117 VEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           V     ++A      +  +G   N  +L + +  LC+ G +E+     S+++E GV+  I
Sbjct: 201 VRIGWVELAWRIYQEISRSGVGVNVYTLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDI 260

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
            T+N+ +         +  ++L H +   G+         +I   C  GK     E+  +
Sbjct: 261 VTYNTLISAYSSQGLMEEAFELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAE 320

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +L  GL P++T +  L+   C+K +      +   M +R+  PD   +  +++   +S  
Sbjct: 321 MLRSGLSPDSTTYRSLLMEACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGN 380

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             +A   FN +KE G +PD V+YT +I G C+ G + +A  +  EM+ +G   +  TYN+
Sbjct: 381 LDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNT 440

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++HG C+   L EA +L  EM ++G    + T   LI G C  G    A  LF++M +K 
Sbjct: 441 ILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKR 500

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           I  DV+TYNTL+ G+ K G I
Sbjct: 501 IKLDVVTYNTLLDGFGKVGDI 521



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 166/345 (48%), Gaps = 16/345 (4%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           F+ +H+    GFSP + + N + + L +     RA +V  + L S G SP+  +    + 
Sbjct: 280 FELMHAMPSKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLM 338

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
             C+ G   E    FS ++   V   +  ++S +    +    D     ++ + E+G   
Sbjct: 339 EACKKGDAVETENIFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIP 398

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LIQ +C  G +SE   L  ++L+ G   +   +N ++   C++K  G   +L 
Sbjct: 399 DNVIYTILIQGYCRKGMISEAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLF 458

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M  R   PD++T   +I+G CK      A  +F  +KE+    D V Y T++ G  K+
Sbjct: 459 NEMTERGLFPDSYTLTILIDGHCKLGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKV 518

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +  A+++W +M+ K +LP   +++ +++  C   +L EA R+  EM+ K    T +  
Sbjct: 519 GDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMIC 578

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           N++I G C  G   +     E+M  +G   D I+YNTLI G+ KE
Sbjct: 579 NSMIKGYCRSGNASDGEIFLEKMISEGFVPDCISYNTLIYGFVKE 623



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 157/333 (47%), Gaps = 14/333 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDLV  + +      +     A+ + +S    G  P+     + IQ  C  G+I EA   
Sbjct: 363 PDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISEAMNL 422

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +++ + G    + T+N+ L G  K        KL++++ E G          LI   C 
Sbjct: 423 RNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCK 482

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    EL +++ E  +  +   +N L+  F +  +     E+   MV++   P   +
Sbjct: 483 LGNLQNAMELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPIS 542

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  ++N LC      EA+RV++++  +   P  ++  ++I G C+ G   D      +MI
Sbjct: 543 FSILVNALCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMI 602

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNTLIAGLCLHGR 389
            +G +P+  +YN++I+G+ + +N+ +A  L K+M +K  G      TYN+++ G C   +
Sbjct: 603 SEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQ 662

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             EA  +  +M ++G+  D  TY +LI G+  +
Sbjct: 663 MKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQ 695



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 135/284 (47%), Gaps = 14/284 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G + D+V+ N +   L + +    A    +     G  P+  +L + I   C+ G ++ A
Sbjct: 430 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERGLFPDSYTLTILIDGHCKLGNLQNA 489

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F K+KE  +   + T+N+ L G  K+   D   +++ D++             L+ A
Sbjct: 490 MELFKKMKEKRIKLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNA 549

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G +SE + +  +++   + P     N +I  +C   N       L  M++    PD
Sbjct: 550 LCSKGHLSEAFRVWDEMISKSIKPTVMICNSMIKGYCRSGNASDGEIFLEKMISEGFVPD 609

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVMYTTVIHGLCKMGWLGDARKM 326
             +Y  +I G  K     +A+ +   ++E+  G VPD   Y +++HG C+   + +A  +
Sbjct: 610 CISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGFCRENQMKEAEAV 669

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
             +MI +G+ P+  TY S+I+G+   DNL EA R H EML +G+
Sbjct: 670 LRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGF 713



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 105/240 (43%), Gaps = 31/240 (12%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ N L D   +      A +    + S    P P S  + +  LC  G + EAF  +
Sbjct: 504 DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISFSILVNALCSKGHLSEAFRVW 563

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
            ++    +  ++   NS                          +I+ +C  G  S+G   
Sbjct: 564 DEMISKSIKPTVMICNS--------------------------MIKGYCRSGNASDGEIF 597

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGL 279
           L +++ +G VP+  ++N LI  F +++N  +   L+  M  +     PD FTY  +++G 
Sbjct: 598 LEKMISEGFVPDCISYNTLIYGFVKEENMSKAFGLVKKMEEKQGGLVPDVFTYNSILHGF 657

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C+  +  EA  V   + ERG  PD   YT++I+G      L +A +   EM+ +G  P++
Sbjct: 658 CRENQMKEAEAVLRKMIERGVNPDRSTYTSLINGFVSQDNLTEAFRFHDEMLQRGFSPDD 717



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/168 (22%), Positives = 62/168 (36%), Gaps = 52/168 (30%)

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY------------------ 349
           + +IH L + G L DA+     MI +  +      NS++  Y                  
Sbjct: 107 SAMIHILVRSGRLSDAQSCVLRMIRRSGVSRVEIVNSLVSTYSNCGSNDSVFDLLIRTFV 166

Query: 350 ----------------------------------CRIDNLEEAKRLHKEMLDKGYGETTV 375
                                              RI  +E A R+++E+   G G    
Sbjct: 167 QARKLREAYEAFTLLRSKGYTVSIDACNALIGSLVRIGWVELAWRIYQEISRSGVGVNVY 226

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           T N ++  LC  G+ ++      E+ +KG++ D++TYNTLI  Y  +G
Sbjct: 227 TLNIMVNALCKDGKMEKVGTFLSEVQEKGVYPDIVTYNTLISAYSSQG 274


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 167/342 (48%), Gaps = 15/342 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVE-----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +YG    + SCN+    L E       A KV ++F +  G   N  S  +    LC+ G 
Sbjct: 210 NYGLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPE-VGVCWNTASYNIITHSLCQLGR 268

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           + EA     +++  G    + ++++ + G  ++     V KL  ++   G          
Sbjct: 269 VVEAHQLLLQMELRGCIPDVISYSTVINGYCQVGELQRVLKLIEEMQIKGLKPNPYTYNG 328

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C  GKV+E   +LR+++ +G+ P+   +  LI  FC+  N      L   M  R 
Sbjct: 329 VILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRK 388

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  VI GLC++ + +EA ++F+++  +   PD V YT +I G CK G + +A 
Sbjct: 389 ISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAF 448

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M+  GL PN  TY ++  G C+   ++ A  L  EM  KG      TYN+L+ GL
Sbjct: 449 SLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGL 508

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G  D+A  L ++M   G   D +TY TL+  YCK  ++V
Sbjct: 509 CKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMV 550



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 166/337 (49%), Gaps = 45/337 (13%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-IDRTDLV 192
           +  +P   +++ Q L E+G+++EA   F K+   G+  S+ + N  +    + +D   + 
Sbjct: 178 WGSDPRVFDIFFQVLVEAGMLDEARKLFDKMLNYGLLISVDSCNLFISHLSEDLDGIKIA 237

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            K++ +  E G          +  + C  G+V E ++LL Q+   G +P+  +++ +I+ 
Sbjct: 238 LKVFVEFPEVGVCWNTASYNIITHSLCQLGRVVEAHQLLLQMELRGCIPDVISYSTVING 297

Query: 244 FCEKKNFGRVSEL-----------------------------------LHTMVARNRAPD 268
           +C+     RV +L                                   L  M++   APD
Sbjct: 298 YCQVGELQRVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPD 357

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+G CK      AYR+F+++++R   PD + YT VI GLC+ G + +A K++ 
Sbjct: 358 GVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFH 417

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ K L P+E TY ++I GYC+   ++EA  LH +ML  G     VTY  L  GLC  G
Sbjct: 418 EMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCG 477

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  L  EM +KG+  ++ TYN+L+ G CK G I
Sbjct: 478 EVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNI 514



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 9/300 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G +P+       I   C+ G +  A+  F ++++  +     T+ + + G  +  R  
Sbjct: 351 SEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVM 410

Query: 191 LVWKLYHDLI-------ESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              KL+H+++       E  Y  LI  +C +GK+ E + L  Q+L+ GL P    +  L 
Sbjct: 411 EADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALA 470

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+       +ELLH M  +    + +TY  ++NGLCK+    +A ++  D++  G+ 
Sbjct: 471 DGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH 530

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD V YTT++   CK   +  A ++  +M+ + L P   T+N +++G+C    LE+ ++L
Sbjct: 531 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKL 590

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            K ML+KG      TYN+LI   C+         ++  M  KG+  D  TYN LI+G+CK
Sbjct: 591 LKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCK 650



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 13/353 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNPNSL 141
           NV  + R F  +      SPD ++   +   L +  R  +    F  +      P+  + 
Sbjct: 373 NVSSAYRLFDEMQKR-KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 431

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
              I   C+ G ++EAF   +++ +MG+  +I T+ +   G  K    D   +L H++  
Sbjct: 432 TALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 491

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          L+   C  G + +  +L++ +   G  P+   +  L+  +C+ +   R
Sbjct: 492 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 551

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             ELL  M+ R   P   T+  ++NG C S    +  ++   + E+G +P+   Y ++I 
Sbjct: 552 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 611

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C    +    +++  M  KG++P+  TYN +I G+C+  N++EA  LH++M+ KG+  
Sbjct: 612 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNL 671

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T  +YN LI G     +  EA  LFE+M ++G+  D   YN        EGK+
Sbjct: 672 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKM 724


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 133/509 (26%), Positives = 217/509 (42%), Gaps = 95/509 (18%)

Query: 8   VLTILRQNPRNFQNPNTQLRNLSI-----ETKESQQLYTEIAKQV---------CKITRT 53
           +LT LR+ P    +P+  LR L+      +     ++Y EI +++          K+  T
Sbjct: 47  LLTALREQP----DPDAALRMLNAALAREDFAPGPEVYEEIIRKLGAAAGAADLMKVLVT 102

Query: 54  KPRWE------------------QTLLSDIPSFNFN--DPLFFREFLKQQNNVLLSI--- 90
           + R E                  Q L  D      N  DPLF  +      N LL++   
Sbjct: 103 EMRREGHQVRVGVVHSFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVE 162

Query: 91  ----RFFQWLHSHYG---FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNS 140
               +  + ++S  G     PD+V+ N L  +L  A   + A+  L+   S+G +P+  +
Sbjct: 163 GSKMKLLETVYSEMGERGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETT 222

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
               +Q   E G I+ A    +++ EMG   +  T N  + G  K+ R +         I
Sbjct: 223 FTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEI 282

Query: 201 ESGY--------------------------------------------LIQAFCNDGKVS 216
            +G+                                            ++   C +G++ 
Sbjct: 283 ANGFEPDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLE 342

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   +L Q++E G +P+ T FN LI   C         +L   +  +  +PD +T+  +I
Sbjct: 343 EAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILI 402

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           N LCK      A R+F ++K  G  PD V Y T+I  LC +G LG A  +  EM   G  
Sbjct: 403 NALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCP 462

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            +  TYN++I G C+   +EEA+ +  +M  +G     +T+NTLI GLC   R D+A  L
Sbjct: 463 RSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQL 522

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +M  +G+  + ITYN+++  YCK+G I
Sbjct: 523 ISQMISEGLQPNNITYNSILTHYCKQGDI 551



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 156/330 (47%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD ++ N   + L +      A KV MD +   G  P+  +  + + CLC++G +EE
Sbjct: 285 GFEPDQITYNTFVNGLCQNGHVGHALKV-MDVMVQEGHDPDVFTYNIVVNCLCKNGQLEE 343

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ E G    I T+N+ ++     +R +    L   +   G          LI 
Sbjct: 344 AKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILIN 403

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G       L  ++   G  P+   +N LI   C     G+  +LL  M +     
Sbjct: 404 ALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPR 463

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+GLCK  +  EA  VF+ +  +G   + + + T+I GLCK   + DA ++ 
Sbjct: 464 STVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLI 523

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +GL PN  TYNS++  YC+  ++++A  + + M   G+    VTY TLI GLC  
Sbjct: 524 SQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKA 583

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           GRT  A  L   M  KG+      YN +IQ
Sbjct: 584 GRTQVALKLLRGMRIKGMRATPKAYNPVIQ 613



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 157/334 (47%), Gaps = 15/334 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + N+L ++L +    ++A+     + S+G +P+  +    I  LC  G + +A
Sbjct: 390 GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKA 449

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++  G   S  T+N+ + G  K  R +   +++  +   G          LI  
Sbjct: 450 LDLLKEMESAGCPRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDG 509

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C D ++ +  +L+ Q++ +GL P N  +N +++ +C++ +  + +++L TM A     D
Sbjct: 510 LCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVD 569

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGLCK+ +   A ++   ++ +G       Y  VI  L +     DA  ++ 
Sbjct: 570 VVTYGTLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFR 629

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRID-NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           EM   G  P+ +TY  +  G CR   ++ EA     EM+DKG+     ++  L  GL   
Sbjct: 630 EMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNL 689

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G  D      E + +K    D  +  + I+GY K
Sbjct: 690 GMDDYFIRAIEIIIEKADLGD--SDVSAIRGYLK 721



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 140/336 (41%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L  +L      + A+D        G SP+  +  + I  LC+ G  + A
Sbjct: 355 GCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLA 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++K  G      T+N+ +     + +      L  ++  +G          +I  
Sbjct: 415 LRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDG 474

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+  Q+   G+      FN LI   C+ K     ++L+  M++    P+
Sbjct: 475 LCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPN 534

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK G    A K+  
Sbjct: 535 NITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVALKLLR 594

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+      YN +I    R +N  +A  L +EM + G      TY  +  GLC  G
Sbjct: 595 GMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEVGEPPDAFTYKIVFRGLCRGG 654

Query: 389 RT-DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +  EA+    EM  KG   +  ++  L +G    G
Sbjct: 655 GSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLG 690


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 151/296 (51%), Gaps = 10/296 (3%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F K+ ++G+   + T+ + L G    DR      L+H +
Sbjct: 116 SFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQM 175

Query: 200 IES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            E+           L+   C +G++ E   LL +++EDGL P    +  ++   C+K + 
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 251 GRVSELLHTM-VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                LL  M    +  P+   Y  +I+ LCK  +  +A  +F +++E+G  PD   Y +
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C  G   DA ++  EM+ + + P+  TYN++I+ + +     EA+ L+ EML +G
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+TY+++I G C   R D A H+F  MA KG   ++IT+NTLI GYC   +I
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRI 411



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 167/341 (48%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSL-VEARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLI 154
           +  G  PD+V+   L   L VE R  +    F  +  T   PN  +    +  LC  G I
Sbjct: 141 TKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETTCRPNVVTFTTLMNGLCREGRI 200

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKID---------RTDLVWKLYHDLIESGY 204
            EA     ++ E G+  +  T+ + + G C K D         + + V  +  +++    
Sbjct: 201 VEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I + C DG+ S+   L  ++ E G+ P+   +N +I  FC    +    +LL  M+ R 
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  +IN   K  K  EA  +++++  RG +P+T+ Y+++I G CK   L  A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M++ M  KG  PN  T+N++I GYC    +++   L  EM + G    T TYNTLI G 
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L G  + A  L +EM   G+  D++T +TL+ G C  GK+
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKL 481



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 165/353 (46%), Gaps = 33/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL + N +      +  +  A   L        SP+  +    I    + G   EA
Sbjct: 285 GIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              + ++   G+  +  T++S + G  K +R D    +++         +LI    LI  
Sbjct: 345 EELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++ E GLV + T +N LI  F    +     +LL  M++    PD
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPD 464

Query: 269 NFTYEEVINGLC----------------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             T + +++GLC                KS+K L+A   FN     G  PD   Y  +I 
Sbjct: 465 IVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFN-----GVEPDVQTYNILIS 519

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL   G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +  
Sbjct: 520 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 579

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+ TLI G C  GR D+   LF EM ++GI  + ITY TLI G+ K G I
Sbjct: 580 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNI 632



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 41/341 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P  ++   + D + +      A++ L    + +   PN       I  LC+ G   +
Sbjct: 214 GLQPTQITYGTIVDGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSD 273

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A   F++++E G+F  + T+NS ++G                          FC+ G+ S
Sbjct: 274 AQNLFTEMQEKGIFPDLFTYNSMIVG--------------------------FCSSGRWS 307

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +  +LL+++LE  + P+   +N LI+ F ++  F    EL   M+ R   P+  TY  +I
Sbjct: 308 DAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMI 367

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G CK  +   A  +F  +  +G  P+ + + T+I G C    + D  ++  EM   GL+
Sbjct: 368 DGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLV 427

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            +  TYN++IHG+  + +L  A  L +EM+  G     VT +TL+ GLC +G+  +A  +
Sbjct: 428 ADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEM 487

Query: 397 FEEMAQK-----------GIFRDVITYNTLIQGYCKEGKIV 426
           F+ M +            G+  DV TYN LI G   EGK +
Sbjct: 488 FKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFL 528



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 23/340 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDAAE 380

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G   ++ T+N+ + G     R D   +L H++ E+G          LI  F
Sbjct: 381 HMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGF 440

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
              G ++   +LL++++  GL P+    + L+   C+        E+   M    +    
Sbjct: 441 YLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDA 500

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I+GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 501 SHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 560

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+ ++I+GYC+   +++   L  EM  +G     +TY 
Sbjct: 561 RLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYI 620

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           TLI G    G  + A  +F+EM   G++ D IT   ++ G
Sbjct: 621 TLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTG 660



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 84/317 (26%), Positives = 143/317 (45%), Gaps = 45/317 (14%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +E+A   FS +       S+  +   +   ++++R DLV  LY          D+     
Sbjct: 60  LEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+ FC+  K+        ++ + GL P+   F  L+   C +        L H M    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  ++NGLC+  + +EA  + + + E G  P  + Y T++ G+CK G      
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 321 --------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                            DA+ ++ EM  KG+ P+ +TYNSMI G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C      +A++L +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 409 VITYNTLIQGYCKEGKI 425
            ITY+++I G+CK+ ++
Sbjct: 360 TITYSSMIDGFCKQNRL 376



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 151/323 (46%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA--MDFLDST-GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ + + D   +      A  M +L +T G SPN  +    I   C +  I++ 
Sbjct: 355 GIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDG 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ E G+     T+N+ + G   +   +    L  ++I SG          L+  
Sbjct: 415 MELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDG 474

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL 
Sbjct: 475 LCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELY 534

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F+ +  + + P+ V +TT+I+G CK 
Sbjct: 535 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKA 594

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ N  TY ++I G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 595 GRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGVYPDTITI 654

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
             ++ GL        A  + E++
Sbjct: 655 RNMLTGLWSKEELKRAVAMLEKL 677



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 85/189 (44%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 49  KLQSGFHEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERPDLVISLYQKMERK 108

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +  +I   C    L  A   + ++   GL P+  T+ +++HG C  D + EA
Sbjct: 109 QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEA 168

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  +M +       VT+ TL+ GLC  GR  EA  L + M + G+    ITY T++ G
Sbjct: 169 LNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDG 228

Query: 419 YCKEGKIVN 427
            CK+G  V+
Sbjct: 229 MCKKGDTVS 237



 Score = 46.2 bits (108), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIE 155
           H G  PD ++ + + D L +      A    DS G   FSPN  +    I   C++G ++
Sbjct: 539 HRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVD 598

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
           +    F ++   G+  +  T+ + + G  K+   +    ++ ++I SG
Sbjct: 599 DGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSG 646


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 167/339 (49%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSL-VEARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
            +GF P+ ++ + L +   +E R  +    +D +    + PN  ++   I  LC  G + 
Sbjct: 132 KFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVT 191

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLI 206
           EA     ++ + G   +  T+   L    K   T L   L+  +         ++   +I
Sbjct: 192 EALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQYSIVI 251

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C DG + +   L  ++   G+  +  A++ +I   C    +   +++L  M+ RN  
Sbjct: 252 DSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNII 311

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  T+  +I+   K  K LEA  ++N++  RG  PDT+ Y+++I G CK   LG+A +M
Sbjct: 312 PNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQM 371

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M+ KG  PN  TY+ +I+ YC+   ++   RL  E+  KG    TVTYNTL+ G C 
Sbjct: 372 LDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQ 431

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G+ + A  LF+EM  +G+   V+TY  L+ G C  G++
Sbjct: 432 SGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 470



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 171/336 (50%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSL-VEARAFK--VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           + P++V+ N L + L ++ R  +  V +D +   G   N  +    +  +C+SG    A 
Sbjct: 170 YRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALAL 229

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
             F K++E  +  S+  ++  +    K    D    L++         D++    +I   
Sbjct: 230 DLFRKMEERSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGL 289

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           CNDG+  +G ++LR+++   ++P    F+ LI  F ++       EL + MVAR  APD 
Sbjct: 290 CNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDT 349

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+G CK  +  EA ++ + +  +G  P+ V Y+ +I+  CK   + +  +++ E
Sbjct: 350 ITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCE 409

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +  KGL+ +  TYN+++ G+C+   L  AK L +EM+ +G   + VTY  L+ GLC +G 
Sbjct: 410 ISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGE 469

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +A  +FE+M +  +   +  YN +I G C   K+
Sbjct: 470 LQKALEIFEKMQKSRMILGIGIYNIIIHGMCNASKV 505



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 159/296 (53%), Gaps = 17/296 (5%)

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           + I  LC+ G +++A   F++++  G+   +  ++S + G     R D   K+  ++I  
Sbjct: 249 IVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGR 308

Query: 203 ---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
                      LI  F  +GK+ E  EL  +++  G+ P+   ++ LI  FC++   G  
Sbjct: 309 NIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEA 368

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           +++L  MV++   P+  TY  +IN  CK+++     R+F ++  +G V DTV Y T++ G
Sbjct: 369 NQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQG 428

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA----KRLHKEMLDKG 369
            C+ G L  A++++ EM+ +G+ P+  TY  ++ G C    L++A    +++ K  +  G
Sbjct: 429 FCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILG 488

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G     YN +I G+C   + D+A+ LF  ++ KG+  DV+TYN +I G CK+G +
Sbjct: 489 IG----IYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSL 540



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 160/336 (47%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L+  + LF ++   + + + + F   +D  G   N  ++ + I C C    +  AF  
Sbjct: 67  PSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSV 126

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             +  + G   +  T+++ + G     R      L   ++E  Y         LI   C 
Sbjct: 127 VGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCL 186

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V+E   L+ ++++ G       +  +++R C+  N     +L   M  R+       
Sbjct: 187 KGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTALALDLFRKMEERSIKASVVQ 246

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+ LCK     +A  +FN+++ +G   D V Y+++I GLC  G   D  KM  EMI
Sbjct: 247 YSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMI 306

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + ++PN  T++++I  + +   L EAK L+ EM+ +G    T+TY++LI G C   R  
Sbjct: 307 GRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLG 366

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           EA  + + M  KG   +++TY+ LI  YCK  ++ N
Sbjct: 367 EANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDN 402



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 125/297 (42%), Gaps = 30/297 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD ++ + L D   +      A   +D + S G  PN  +  + I   C++  ++  
Sbjct: 344 GIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVTYSILINSYCKAKRVDNG 403

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F ++   G+     T+N+                          L+Q FC  GK++ 
Sbjct: 404 MRLFCEISSKGLVADTVTYNT--------------------------LVQGFCQSGKLNV 437

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             EL ++++  G+ P    +  L+   C+     +  E+   M           Y  +I+
Sbjct: 438 AKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNIIIH 497

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G+C + K  +A+ +F  L  +G  PD + Y  +I GLCK G L +A  ++ +M   G  P
Sbjct: 498 GMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAP 557

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           ++ TYN +I  +     +  +  L +EM  +G+     T   ++  L   GR D+ +
Sbjct: 558 SDCTYNILIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVVVMLS-DGRLDKTF 613



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D KV+E  +L   +++   +P    F+KL S    +K +  V      M       + +T
Sbjct: 47  DIKVNEAIDLFESMIQSRPLPSLIDFSKLFSAVARRKEYDLVLGFCKEMDLNGIEHNMYT 106

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +IN  C+ RK L A+ V     + G+ P+T+ ++T+I+G C  G + +A  +   M+
Sbjct: 107 MNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLEGRVSEAVALVDRMV 166

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                PN  T N++I+G C    + EA  L   M+  G     +TY  ++  +C  G T 
Sbjct: 167 EMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITYGPVLNRMCKSGNTA 226

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  LF +M ++ I   V+ Y+ +I   CK+G +
Sbjct: 227 LALDLFRKMEERSIKASVVQYSIVIDSLCKDGNL 260


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 166/339 (48%), Gaps = 20/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N + + L    E  A    +  ++  G  PN  +    I  LC   L+ EA
Sbjct: 193 GCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEA 252

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-------------LYHDLIESGY 204
              FS +K  G+   I T+ S + G  K  R    WK             +  D++    
Sbjct: 253 LDIFSYMKAKGISPDIFTYTSLIQGLCKFSR----WKEASALLNEMTSLNIMPDIVTFNV 308

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  FC +GKVSE   +L+ + E G+ P    ++ L+  +    +     +L H M+ + 
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+ F+Y  +ING CK+++  EA ++FN++  +G  P+ V Y T+IHG C++G L +A+
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQ 428

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M   G LP+ +TY+ ++ G+C+   L +A RL + M         V Y  L+  +
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  G   +A  LF E+  +G+   V  Y T+I G CKEG
Sbjct: 489 CKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEG 527



 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/306 (29%), Positives = 156/306 (50%), Gaps = 9/306 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           ++  G SPN  +L +++ C C+   ++  F   +K+ ++G+  +I T+ + + G  K+  
Sbjct: 119 MELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGE 178

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                +L+ D++  G          +I   C  G+ +    LL+++ E G  P    ++ 
Sbjct: 179 FAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYST 238

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C  +      ++   M A+  +PD FTY  +I GLCK  +  EA  + N++    
Sbjct: 239 LIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLN 298

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            +PD V +  ++   CK G + +A  +   M   G+ PN  TY+S+++GY    ++ EA+
Sbjct: 299 IMPDIVTFNVLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEAR 358

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +L   M+ KG      +YN LI G C   R DEA  LF EM  +G+  + ++YNTLI G+
Sbjct: 359 KLFHVMITKGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGF 418

Query: 420 CKEGKI 425
           C+ GK+
Sbjct: 419 CQLGKL 424



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 156/333 (46%), Gaps = 13/333 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++  F ++ +  G SPD+ +   L   L +   +K A   L+   S    P+  +  + +
Sbjct: 252 ALDIFSYMKAK-GISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLV 310

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
              C+ G + EA      + EMGV  ++ T++S + G           KL+H +I  G  
Sbjct: 311 DTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKGCK 370

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C   ++ E  +L  +++  GL P N ++N LI  FC+        +L
Sbjct: 371 PNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDL 430

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M      PD FTY  +++G CK     +A+R+F  ++     P+ VMYT ++H +CK
Sbjct: 431 FRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAMCK 490

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G   DARK++ E+  +GL P+   Y ++I+G C+   L+EA    + M   G     ++
Sbjct: 491 SGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEIS 550

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           YN +I GL  H     A  L  EM  +G   DV
Sbjct: 551 YNVIIRGLLQHKDESRALLLVGEMRDRGFIADV 583



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 103/206 (50%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            L +Q+   GL P     +  ++ FC+ +       +L  ++     P   T+  +INGL
Sbjct: 114 SLSKQMELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGL 173

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK  +  +A  +F+D+  +G  PD   Y T+I+GLCK+G    A  +  +M   G  PN 
Sbjct: 174 CKVGEFAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNM 233

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TY+++I   CR   + EA  +   M  KG      TY +LI GLC   R  EA  L  E
Sbjct: 234 VTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNE 293

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M    I  D++T+N L+  +CKEGK+
Sbjct: 294 MTSLNIMPDIVTFNVLVDTFCKEGKV 319



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 78/155 (50%), Gaps = 1/155 (0%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR-KMWFE 329
           TY+   +     R   +A   FN +  R  +P  + +  ++  + KMG   D    +  +
Sbjct: 59  TYQHKNDASSSFRNIDDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQ 118

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   GL PN YT +  ++ +C++  ++    +  +++  G   T VT+ TLI GLC  G 
Sbjct: 119 MELVGLSPNIYTLSIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGE 178

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             +A  LF++M  KG   DV TYNT+I G CK G+
Sbjct: 179 FAQAVELFDDMVAKGCQPDVYTYNTIINGLCKIGE 213


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ NVL D+   A     A+  +DS    G  P   +    ++ LC+    ++A   
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEV 249

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F  + +  V   ++++N  + G  ++       K Y          D++    LI  F  
Sbjct: 250 FRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSR 309

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++      LR++   GLVP+   +  +I  FC   +      +   MV     PD  T
Sbjct: 310 RGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVT 369

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLCK  + L+A ++ N+++ERG  PD   +TT+IHG C+ G   +A +++  ++
Sbjct: 370 YNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLL 429

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + L P+  TYNS+I G CR  +L +A  L  +M  +      +TY+ LI   C  G+ +
Sbjct: 430 RQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVE 489

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A+   +EM +KG   ++ TYN++I+GYC+ G +
Sbjct: 490 DAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNV 523



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 178/396 (44%), Gaps = 42/396 (10%)

Query: 40  YTEIAKQVCKITRTKPRWEQ-------TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           Y  + K +CK  R     E        ++  D+ SFN     F R        V  +++F
Sbjct: 230 YNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCR-----VGEVKEAVKF 284

Query: 93  FQWLHSHYGFSPDLVS--CNV-LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLC 149
           ++ +   Y  +PD+VS  C + LF    E       +  +   G  P+     + I   C
Sbjct: 285 YKEMQHRY-VTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFC 343

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
            +G + EA     ++   G    + T+N+                          L+   
Sbjct: 344 RAGSMSEALRVRDEMVGFGCLPDVVTYNT--------------------------LLNGL 377

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C   ++ +  +LL ++ E G+ P+   F  LI  +C + NF    +L  T++ +   PD 
Sbjct: 378 CKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDV 437

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+G+C+     +A  +++D+  R  +P+ + Y+ +I   C+ G + DA     E
Sbjct: 438 VTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDE 497

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ KG LPN  TYNS+I GYCR  N+++ ++  ++M         +T+NTLI G      
Sbjct: 498 MVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEEN 557

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              A+++F  M ++ +  D +TYN +I G+ ++G +
Sbjct: 558 MHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNM 593



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 118/233 (50%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           ++ D++    LI A    G V     L+  +   GL P    +N ++   C+ + F +  
Sbjct: 188 VFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAK 247

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           E+  TM   + APD  ++  +I G C+  +  EA + + +++ R   PD V ++ +I   
Sbjct: 248 EVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLF 307

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            + G +  A     EM   GL+P+   Y  +I G+CR  ++ EA R+  EM+  G     
Sbjct: 308 SRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDV 367

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           VTYNTL+ GLC   R  +A  L  EM ++G+  D+ T+ TLI GYC++G   N
Sbjct: 368 VTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFEN 420



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 136/284 (47%), Gaps = 12/284 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G  PD+V+ N L + L +      A   ++ ++  G +P+  +    I   C  G  E 
Sbjct: 361 FGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFEN 420

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG-CIKID--RTDLVWKLYH------DLIESGYLIQ 207
           A   F  L    +   + T+NS + G C K D  + + +W   H      + I    LI 
Sbjct: 421 ALQLFDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILID 480

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C  G+V + +  L ++++ G +P    +N +I  +C   N  +  + L  M   N  P
Sbjct: 481 SHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDNVFP 540

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  +I+G  K      A+ VFN +++    PD V Y  +I+G  + G + DA +++
Sbjct: 541 DLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVF 600

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             M   G+ P+ YTY S+I+G+    N ++A +LH EM+ +G+ 
Sbjct: 601 KGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRGFA 644



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 134/302 (44%), Gaps = 9/302 (2%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P P   +L I+   +S    EAF AF  L +  V       N+ L    +     L  +
Sbjct: 84  TPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQE 143

Query: 195 LYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
            Y  ++ S           ++ ++C   +      ++ ++ +  + P+    N LI    
Sbjct: 144 AYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARF 203

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              +      L+ +M  R   P   TY  V+ GLCK R+  +A  VF  + +    PD  
Sbjct: 204 RAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVR 263

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +  +I G C++G + +A K + EM H+ + P+  +++ +I  + R   ++ A    +EM
Sbjct: 264 SFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREM 323

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G     V Y  +I G C  G   EA  + +EM   G   DV+TYNTL+ G CK+ ++
Sbjct: 324 KGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRL 383

Query: 426 VN 427
           ++
Sbjct: 384 LD 385



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 114/261 (43%), Gaps = 30/261 (11%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
           +Q N   +++ F  L       PD+V+ N L D +        A +  D   +    PN 
Sbjct: 414 RQGNFENALQLFDTLLRQR-LRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNH 472

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I   CE G +E+AF    ++ + G   +I+T+NS                    
Sbjct: 473 ITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNS-------------------- 512

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I+ +C  G V +G + L+++ +D + P+   FN LI  + +++N      + +
Sbjct: 513 ------IIKGYCRSGNVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFN 566

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M      PD  TY  +ING  +     +A RVF  + + G  PD   Y ++I+G    G
Sbjct: 567 IMEKEMVRPDAVTYNMIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTYMSLINGHVTAG 626

Query: 319 WLGDARKMWFEMIHKGLLPNE 339
               A ++  EMIH+G  P++
Sbjct: 627 NSKQAFQLHDEMIHRGFAPDD 647



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 38/222 (17%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KER 298
           L+ R   ++   R  E++ +++A +  P    ++ +I    +SRK  EA+  F  L   R
Sbjct: 59  LLLRMSRRRGASR-REIVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHR 117

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC-------- 350
             VP +     ++  L + GW   A++ +  ++      N YT N M+H YC        
Sbjct: 118 VPVPASA-SNALLAVLSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGA 176

Query: 351 ---------------------------RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
                                      R  +++ A  L   M ++G     VTYN+++ G
Sbjct: 177 DTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKG 236

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC H R D+A  +F  M Q  +  DV ++N LI G+C+ G++
Sbjct: 237 LCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEV 278


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 184/399 (46%), Gaps = 46/399 (11%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS- 131
           P      L+Q +++  +++FF W     G+     +CN L  + V  +  + A D   + 
Sbjct: 99  PSVVGRVLQQLDDLDKAVKFFDWCTGQPGYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNH 158

Query: 132 -TGF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
             G  SP+  +    I   C++   ++A+    ++++ G+      +N+ + G     R 
Sbjct: 159 RCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRV 218

Query: 190 DLVWKLYHDL--------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
           D     Y D+        I    L+ A C   ++S+   +L  ++E G  P    +N LI
Sbjct: 219 DSALVHYRDMQRNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLI 278

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           + FC+  N      L + M+  + +PD FTY  +I+G CK  +  +  ++  ++ + G  
Sbjct: 279 NGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCE 338

Query: 302 PDTVMYTTVIHGL-----------------------------------CKMGWLGDARKM 326
           P+ + Y T++  L                                   CK+G L  A ++
Sbjct: 339 PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL 398

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M  +G LP+ YTYN MI G CR + +++A++L + M + G     VTYN++++GLC 
Sbjct: 399 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 458

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + DEAY ++E +   G F DV+T +TLI G CK  ++
Sbjct: 459 ASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRL 497



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 160/338 (47%), Gaps = 14/338 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           YG  P+ ++ N L DSLV++     AF +A   L      P+  +  L I   C+ G ++
Sbjct: 335 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML-RRDCKPSHFTFNLMIDMFCKVGQLD 393

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
            A+  F  + + G    I T+N  + G  + +R D   +L   + E+G          ++
Sbjct: 394 LAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIV 453

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C   +V E YE+   +   G   +    + LI   C+ +      +LL  M     A
Sbjct: 454 SGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSA 513

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD   Y  +I+G CK+ +  ++   F+++ ++G VP  + Y+ VI  LCK   + D   +
Sbjct: 514 PDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCML 573

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M+ +G+ P+   Y S+I G C+ D+ +EA  L+K M   G   T VTYN L+  LC 
Sbjct: 574 LKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCK 633

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             R DEA HL E M   G   D +TYN++  G+ K  +
Sbjct: 634 VSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAE 671



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/366 (27%), Positives = 164/366 (44%), Gaps = 47/366 (12%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P +++  +L D+L ++     A   L+     G +PN  +    I   C+ G ++EA  
Sbjct: 233 APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVV 292

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------------- 203
            F+++ E      + T+N  + G  K +R     KL  ++++ G                
Sbjct: 293 LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 352

Query: 204 ----------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
                                        +I  FC  G++   YEL + + + G +P+  
Sbjct: 353 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 412

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +N +IS  C         +LL  M      PD  TY  +++GLCK+ +  EAY V+  L
Sbjct: 413 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 472

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +  GY  D V  +T+I GLCK   L DA K+  EM   G  P+   Y  +IHG+C+ D L
Sbjct: 473 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 532

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           +++     EMLDKG   T +TY+ +I  LC   R  +   L + M ++G+  D I Y ++
Sbjct: 533 DKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSV 592

Query: 416 IQGYCK 421
           I G CK
Sbjct: 593 IDGLCK 598



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 152/340 (44%), Gaps = 19/340 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           SH+ F       N++ D   +     +A +    +   G  P+  +  + I   C +  I
Sbjct: 375 SHFTF-------NLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRI 427

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++A     ++ E G    + T+NS + G  K  + D  +++Y  L   GY         L
Sbjct: 428 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 487

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   ++ +  +LLR++  +G  P+  A+  LI  FC+     +       M+ +  
Sbjct: 488 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGC 547

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  VI+ LCKS +  +   +   + ERG  PD ++YT+VI GLCK     +A +
Sbjct: 548 VPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYE 607

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M   G  P   TYN ++   C++  L+EA  L + M   G    TVTYN++  G  
Sbjct: 608 LYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFW 667

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                D+A+ LF+ M  +G       Y+ L+     E K+
Sbjct: 668 KSAEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKM 707



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 1/231 (0%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H       L+ AF    K  E Y+L +        P++  ++ LI+ FC+ ++F +   L
Sbjct: 130 HSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRL 189

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M  R   P N  Y  +I GLC + +   A   + D+ +R   P  + YT ++  LCK
Sbjct: 190 LDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRNCAPSVITYTILVDALCK 248

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + DA  +  +MI  G  PN  TYN++I+G+C++ N++EA  L  +ML+        T
Sbjct: 249 SARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 308

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           YN LI G C   R  +   L +EM + G   + ITYNTL+    K GK ++
Sbjct: 309 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID 359



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/365 (27%), Positives = 163/365 (44%), Gaps = 17/365 (4%)

Query: 66  PS-FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           PS F FN  L    F K    + L+   FQ L +  G  PD+ + N++      A     
Sbjct: 374 PSHFTFN--LMIDMFCKV-GQLDLAYELFQ-LMTDRGCLPDIYTYNIMISGACRANRIDD 429

Query: 125 AMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           A   L+     G  P+  +    +  LC++  ++EA+  +  L+  G F  + T ++ + 
Sbjct: 430 ARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLID 489

Query: 182 GCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K  R D   KL  ++  +G          LI  FC   ++ +      ++L+ G VP
Sbjct: 490 GLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVP 549

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               ++ +I + C+         LL TM+ R   PD   Y  VI+GLCKS    EAY ++
Sbjct: 550 TVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELY 609

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
             +K+ G  P  V Y  ++  LCK+  L +A  +   M   G LP+  TYNS+  G+ + 
Sbjct: 610 KLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKS 669

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              ++A RL + M  +G   T   Y+ L+  L    + D+A  ++EE  + G   D    
Sbjct: 670 AEHDKAFRLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIWEEALEAGADVDPEIS 729

Query: 413 NTLIQ 417
            TL Q
Sbjct: 730 RTLQQ 734


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 170/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  + VS   L + L +      A+  L   D     PN       I  +C+  L+ EA
Sbjct: 172 GFHLNKVSYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEA 231

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CI---KIDRTDLVWKLYHDLIESGY-----LIQA 208
           F  +S++   G+   + T+N+ + G CI     D TDL  K+  + I         L+  
Sbjct: 232 FDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDG 291

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC + ++ E   +L  +++ G+ P+   +N L+ R+C  K   +   + +T+  R   P+
Sbjct: 292 FCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPN 351

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+G CK +K  EA  +F ++     +PD V Y ++I GLCK+G +  A K+  
Sbjct: 352 IHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVD 411

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G+  ++ TYNS++   C+   +++A  L  +M D+G      TY TL+ GLC +G
Sbjct: 412 EMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNG 471

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R ++A  +FE++  KG   DV  Y  +IQG+C  G
Sbjct: 472 RLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHG 506



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 167/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++++   L   L        A+ F D   + GF  N  S    I  LC+ G    A
Sbjct: 137 GYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKVGQTSAA 196

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++    V  ++  +N+ +    K+   +  + LY +++  G          LI  
Sbjct: 197 LQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISG 256

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ +  +L  +++ + + P    FN L+  FC+++       +L  M+ +   PD
Sbjct: 257 FCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPD 316

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +++  C  ++  +A  +FN + +RG  P+   Y+ +IHG CK+  + +A  ++ 
Sbjct: 317 VFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFK 376

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    ++P+  TYNS+I G C++  +  A +L  EM D+G     +TYN+++  LC + 
Sbjct: 377 EMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNH 436

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D+A  L  +M  +GI  D+ TY TL+ G CK G++
Sbjct: 437 QVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRL 473



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 202/428 (47%), Gaps = 27/428 (6%)

Query: 18  NFQ--NPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLF 75
           NFQ  NPN  +R L   +  S +LY++  +           + + L    P      P  
Sbjct: 18  NFQLPNPNFLIRLLPFSSSSSTRLYSQFHENDDNKHNLVSSFNRLLHQKNPK-----PSI 72

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHY-----GFSPDLVSCNVLFDSLVE----ARAFKVAM 126
           F +F K   +++ S  +   +  H      G + DLV  ++L +   +      +F V  
Sbjct: 73  F-QFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFSQLGQNPLSFSVLA 131

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
             L   G+ PN  +L   I+ LC  G I +A     K+  +G   +  ++ + + G  K+
Sbjct: 132 KIL-KMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKVSYGTLINGLCKV 190

Query: 187 DRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            +T    +L           +++    +I + C    V+E ++L  +++  G+ P+   +
Sbjct: 191 GQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTY 250

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N LIS FC        ++L + M+  N  P+ +T+  +++G CK R+  EA  V   + +
Sbjct: 251 NALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMK 310

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +G  PD   Y +++   C +  +  A+ ++  +  +G+ PN ++Y+ MIHG+C+I  ++E
Sbjct: 311 QGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDE 370

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L KEM         VTYN+LI GLC  G+   A  L +EM  +G+  D ITYN+++ 
Sbjct: 371 AMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILD 430

Query: 418 GYCKEGKI 425
             CK  ++
Sbjct: 431 ALCKNHQV 438



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 146/318 (45%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ N L          K A D  +   F   +PN  +  + +   C+   ++EA
Sbjct: 242 GISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEA 301

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + + G+   + T+NS +     +   +    +++ + + G          +I  
Sbjct: 302 KNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHG 361

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   KV E   L +++  + ++P+   +N LI   C+        +L+  M  R    D
Sbjct: 362 FCKIKKVDEAMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHD 421

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+ +  +A  +   +K+ G  PD   YTT++ GLCK G L DAR ++ 
Sbjct: 422 KITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFE 481

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ KG + +   Y +MI G+C     +E+  L  +M + G     VTY  +I  L    
Sbjct: 482 DLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIICSLFDKD 541

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A  L  EM  +G+F
Sbjct: 542 ENDKAEKLLREMITRGLF 559


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 169/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   DLV+   L   L   + F+V M+ +D     G+ P+  ++   I+ L + G IE A
Sbjct: 290 GLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGA 349

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K+ ++GV  ++  +NS +    K  + +    L+  + E G          LI  
Sbjct: 350 FELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDG 409

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F    K+   +    +++E G+     ++N +I+  C+         L   MV +   P 
Sbjct: 410 FGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPT 469

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK     +A+++++++  +G  P+TV +T +I GLC++  + +A K++ 
Sbjct: 470 VATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFD 529

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+   +LPNE TYN +I G+CR  N   A  L  EM+ KG    T TY  LIAGLC  G
Sbjct: 530 EMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTG 589

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  EA     ++  K    D + Y  L+QG+CKEG+I
Sbjct: 590 RVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRI 626



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 160/330 (48%), Gaps = 12/330 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G+ P   + + L + L++  + + A + L+  G     PN       I  LC++G +EEA
Sbjct: 325 GYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEA 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              FS + E G+  +  T+   + G  +  + D+ +  ++ +IE G          +I  
Sbjct: 385 ELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINC 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK+     L +++++ GL P    +  LIS +C+     +  +L H M  +  AP+
Sbjct: 445 QCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPN 504

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I GLC+  K  EA ++F+++ E   +P+ V Y  +I G C+ G    A ++  
Sbjct: 505 TVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLD 564

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI KGL P+ YTY  +I G C    + EAK    ++  K      + Y  L+ G C  G
Sbjct: 565 EMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEG 624

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           R  EA    +EM  +G+  D+++Y  LI G
Sbjct: 625 RIKEALVARQEMVGRGLQMDLVSYAVLISG 654



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 103/404 (25%), Positives = 168/404 (41%), Gaps = 80/404 (19%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ V+  +L D         VA  + +     G S    S    I C C+ G ++ A
Sbjct: 395 GLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKMA 454

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+  ++ T+ S + G  K       +KLYH++   G          LI  
Sbjct: 455 ELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICG 514

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K++E  +L  +++E  ++P    +N LI   C + N  R  ELL  M+ +  +PD
Sbjct: 515 LCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPD 574

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA----- 323
            +TY  +I GLC + +  EA    NDL  +    D + YT ++ G CK G + +A     
Sbjct: 575 TYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQ 634

Query: 324 -------------------------RKMWFEMIH----KGLLPNEYTYNSMIHGYCRIDN 354
                                     ++ FE++     KG+ P+   Y  +I G+ +  N
Sbjct: 635 EMVGRGLQMDLVSYAVLISGALNQNDRILFELLREMHGKGMQPDNVIYTILIDGFIKSGN 694

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM-------------- 400
           L++A      M+ +GY   +VTY  L+ GL   G  +EA  LF+ M              
Sbjct: 695 LKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGC 754

Query: 401 --------------------AQKGIFRDVITYNTLIQGYCKEGK 424
                                 +G F + +TYN LI+GYC+ GK
Sbjct: 755 FLDHLTKEGNMENALQLHNAMLQGSFANTVTYNILIRGYCQIGK 798



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 29/333 (8%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESG 152
           L   YG  P++ + + L ++L   R F+  ++  D+    G  P+     + ++CLCE  
Sbjct: 180 LMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELK 239

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
              +A    ++ +  G   SI T+N                            I   C  
Sbjct: 240 DFNKAKEIINQAEGNGCSLSIVTYN--------------------------VFINGLCKS 273

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            +V E  E+ R + E GL  +   +  L+   C  + F    E++  M+     P     
Sbjct: 274 KRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPSEAAV 333

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I GL K      A+ + N + + G VP+  +Y ++I+ LCK G L +A  ++  M  
Sbjct: 334 SGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFSVMAE 393

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +GL PN+ TY  +I G+ R   L+ A     +M++ G   T  +YN++I   C  G+   
Sbjct: 394 RGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSMINCQCKFGKMKM 453

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A  LF+EM  KG+   V TY +LI GYCK+G +
Sbjct: 454 AELLFKEMVDKGLKPTVATYTSLISGYCKDGLV 486



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 156/337 (46%), Gaps = 14/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ V+   L   L +      A    D        PN  +  + I+  C  G    A
Sbjct: 500 GIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCREGNTTRA 559

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYHD---LIESGY--LIQA 208
           F    ++ + G+     T+   + G     R     + +  L+H    L E  Y  L+Q 
Sbjct: 560 FELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQG 619

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G++ E     ++++  GL  +  ++  LIS     +N   + ELL  M  +   PD
Sbjct: 620 FCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG-ALNQNDRILFELLREMHGKGMQPD 678

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  Y  +I+G  KS    +A+  +  +   GYVP++V YT +++GL K G++ +A+ ++ 
Sbjct: 679 NVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFK 738

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+    +PN  TY   +    +  N+E A +LH  ML   +   TVTYN LI G C  G
Sbjct: 739 RMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSFA-NTVTYNILIRGYCQIG 797

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  EA  L + M   G+  D ITY+T I  YCK G +
Sbjct: 798 KFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNV 834



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 101/437 (23%), Positives = 197/437 (45%), Gaps = 35/437 (8%)

Query: 19  FQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFRE 78
           F+   T+ RNL ++  E+   +  + +Q   I R    W+    +   S N       + 
Sbjct: 20  FRKFCTRRRNLELDN-ENDSHFVYVLEQ---IVRGNQSWKIAFNNSSISGNIEPHHVEKV 75

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF---------------- 122
            ++  ++  L++RFF +L  H  F     S  +L  SL++   F                
Sbjct: 76  LIRTLDDSRLALRFFNFLGLHRNFHHSTASFCILIHSLLQNNLFWPASSLLQTLLLRGLN 135

Query: 123 --KVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
             ++  +F +S     FS + +  ++ IQ   ++  + +     + +++ G+   ++T +
Sbjct: 136 PHQIFENFFESYKKYKFSSS-SGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLS 194

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLED 228
           + L    +I +   V +L+  L+ +G          +++  C     ++  E++ Q   +
Sbjct: 195 ALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGN 254

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G       +N  I+  C+ K      E+  ++  +    D  TY  ++ GLC+ ++    
Sbjct: 255 GCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVG 314

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             + +++ E GYVP     + +I GL KMG +  A ++  ++   G++PN + YNSMI+ 
Sbjct: 315 MEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINS 374

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+   LEEA+ L   M ++G     VTY  LI G     + D A++ F +M + GI   
Sbjct: 375 LCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISAT 434

Query: 409 VITYNTLIQGYCKEGKI 425
           V +YN++I   CK GK+
Sbjct: 435 VYSYNSMINCQCKFGKM 451



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 154/335 (45%), Gaps = 16/335 (4%)

Query: 104 PDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+ V+ NVL +         RAF++ +D +   G SP+  +    I  LC +G + EA  
Sbjct: 538 PNEVTYNVLIEGHCREGNTTRAFEL-LDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKE 596

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIK--------IDRTDLVWK-LYHDLIESGYLIQAFC 210
             + L           + + L G  K        + R ++V + L  DL+    LI    
Sbjct: 597 FINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGAL 656

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           N       +ELLR++   G+ P+N  +  LI  F +  N  +  E  + M+     P++ 
Sbjct: 657 NQND-RILFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSV 715

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  ++NGL K+    EA  +F  +     +P+ + Y   +  L K G + +A ++   M
Sbjct: 716 TYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAM 775

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G   N  TYN +I GYC+I   +EA +L   M+  G     +TY+T I   C  G  
Sbjct: 776 L-QGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNV 834

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D A  ++E M Q+G+  D + +N LI   C  G++
Sbjct: 835 DAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGEL 869



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 100/221 (45%), Gaps = 10/221 (4%)

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G IK       ++ ++ +I  GY         L+      G V+E   L +++L    +P
Sbjct: 688 GFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIP 747

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
            +  +   +    ++ N     +L H  + +    +  TY  +I G C+  K  EA ++ 
Sbjct: 748 NHITYGCFLDHLTKEGNMENALQL-HNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLL 806

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + +   G VPD + Y+T I+  CK G +  A  MW  M+ +GL P+   +N +IH  C  
Sbjct: 807 DVMIGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLN 866

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
             L+ A +L  +M+ +G   T  TY++L+  L    R  + 
Sbjct: 867 GELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQV 907


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 160/328 (48%), Gaps = 20/328 (6%)

Query: 102 FSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
             PD+V+ + L ++ V+    + A ++  + L    F P   +    I   C+   +E+A
Sbjct: 146 IDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIF-PTTITYSSMIDGFCKHSRLEDA 204

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F  +   G    I T N+ + GC +  R               +LI  FC  G V+ 
Sbjct: 205 KHMFDLMVSKGCSPDIITLNTLIDGCCRAKR---------------HLIHGFCQVGNVNV 249

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +L ++++ +G+ P+    N L++  CE     +  E+           D  T   +IN
Sbjct: 250 AQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIIN 309

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G+CK  K  EA+ +FN L   G   D V Y  +I    K G    A  ++ EM+ KG++P
Sbjct: 310 GMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIP 369

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYNSM+ G+C+ + LEEA+++   M+ +G     VT++TLI G C  GR D+   LF
Sbjct: 370 STVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELF 429

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EM Q+G+  D ITYN LI G+CK G +
Sbjct: 430 SEMCQRGLVADTITYNALIHGFCKVGDL 457



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 148/319 (46%), Gaps = 41/319 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARA-----------FKVAMDFLD---STGFSPNPNSLELYIQ 146
           G SPD+++ N L D    A+              VA D      S G SP+  +    + 
Sbjct: 215 GCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLA 274

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
            LCE+G +E+A   F   ++                           K+  D      +I
Sbjct: 275 GLCENGKLEKALEMFKVFQK--------------------------SKMDLDTATCNIII 308

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C   KV E ++L   +  +G+  +   +N LI  F ++ NF R  ++   M+ +   
Sbjct: 309 NGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGII 368

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY  +++G CK  +  EA ++ + +   G  PD V ++T+I G CK G + D  ++
Sbjct: 369 PSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLEL 428

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM  +GL+ +  TYN++IHG+C++ +L  A+ + +EM+  G    T+T+ +++AGLC 
Sbjct: 429 FSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCT 488

Query: 387 HGRTDEAYHLFEEMAQKGI 405
                +   + E++ QK +
Sbjct: 489 KAELQKGLTMLEDL-QKSV 506



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 144/314 (45%), Gaps = 20/314 (6%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
           TG   N  +    +  LC  G + +A     ++ E G      T+ + + G  K+  T  
Sbjct: 4   TGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVS 63

Query: 192 VWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
              +   + ES           ++   C DG   +   +  ++ E G+ P    +N +I 
Sbjct: 64  ALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMID 123

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            +C    +    +LL  M+ RN  PD  T+  +IN   K  K   A  ++ ++  R   P
Sbjct: 124 GYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFP 183

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS-----------MIHGYCR 351
            T+ Y+++I G CK   L DA+ M+  M+ KG  P+  T N+           +IHG+C+
Sbjct: 184 TTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQ 243

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           + N+  A+ L +EM+  G     VT NTL+AGLC +G+ ++A  +F+   +  +  D  T
Sbjct: 244 VGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTAT 303

Query: 412 YNTLIQGYCKEGKI 425
            N +I G CK  K+
Sbjct: 304 CNIIINGMCKGNKV 317



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 154/337 (45%), Gaps = 40/337 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+   + + + +      A++ L   D +    N       +  LC+ G   +A
Sbjct: 40  GHQPDAVTYGTIVNGMCKLGDTVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKA 99

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F+++ E G+F ++ T+N                           +I  +C+ GK S+
Sbjct: 100 QNIFTEMHEKGIFPNVLTYNC--------------------------MIDGYCSYGKWSD 133

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LLR ++E  + P+   F+ LI+ F ++       EL   M+ RN  P   TY  +I+
Sbjct: 134 AEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMID 193

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI-----------HGLCKMGWLGDARKM 326
           G CK  +  +A  +F+ +  +G  PD +   T+I           HG C++G +  A+ +
Sbjct: 194 GFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDL 253

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EMI  G+ P+  T N+++ G C    LE+A  + K          T T N +I G+C 
Sbjct: 254 FQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCK 313

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + DEA+ LF  +   G+  DV+TYN LI  + KEG
Sbjct: 314 GNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEG 350



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 107/232 (46%), Gaps = 35/232 (15%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++E G       F  L++  C +    +   L+  MV     PD  TY  ++NG+CK   
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            + A  +   + E     + V+Y+ ++  LCK G    A+ ++ EM  KG+ PN  TYN 
Sbjct: 61  TVSALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNC 120

Query: 345 MIHGYC------------------RID-----------------NLEEAKRLHKEMLDKG 369
           MI GYC                   ID                  +  A+ L++EML + 
Sbjct: 121 MIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRN 180

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              TT+TY+++I G C H R ++A H+F+ M  KG   D+IT NTLI G C+
Sbjct: 181 IFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCR 232



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 36/63 (57%)

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M++ G     VT+ TL+ GLC  GR  +A  L + M ++G   D +TY T++ G CK G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 425 IVN 427
            V+
Sbjct: 61  TVS 63


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 175/345 (50%), Gaps = 18/345 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFS----PNPNSLELYIQCLCES 151
           G +P+ V+   L   L +     +A+        D++ +     P   +  + I  LC+ 
Sbjct: 191 GCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKV 250

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           G  +EA   F ++K  G+   + ++++ + G     + D    L+ ++++ G        
Sbjct: 251 GREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTF 310

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI   C +GKV+E  +LL  +++ G+VP    +N LI  FC   +     EL  +M +
Sbjct: 311 SVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPS 370

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   PD  +Y  +ING CK+ K  EA  ++N++ + G  P+   Y T++ GL + G +GD
Sbjct: 371 KGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGD 430

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A+K++  M   G+  N   Y   + G C+ D L EA  L  E+    +      Y+ LI 
Sbjct: 431 AKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLID 490

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           GLC  G+ + A+ LFE+++Q+G+  DV+TYN +I G+CK G++ N
Sbjct: 491 GLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDN 535



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 168/359 (46%), Gaps = 24/359 (6%)

Query: 87  LLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPN 137
           L  I  +  L S Y      G SPDL + ++L + L           AM  +   G+ PN
Sbjct: 101 LAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPN 160

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +    I+ LC    I EA   F +++++G   +  T+ + + G  +    ++  KL+ 
Sbjct: 161 VVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHK 220

Query: 198 DLIESG---------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           +++                   +I   C  G+  E  EL  ++   G++P+  +++ LI 
Sbjct: 221 EMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIH 280

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC    + +   L   MV +   PD  T+  +I+ LCK  K  EA ++   + +RG VP
Sbjct: 281 GFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVP 340

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + + Y ++I G C +G L  AR+++  M  KGL P+E +Y ++I+GYC+   ++EA  L+
Sbjct: 341 NLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLY 400

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            EML  G      TY TL+ GL   G+  +A  LF  M   G+  +   Y   + G CK
Sbjct: 401 NEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCK 459



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 145/294 (49%), Gaps = 17/294 (5%)

Query: 149 CESGLIE--EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------- 197
           C++G I   +AF  F  +        I ++N  L G  KI+    ++ LY+         
Sbjct: 65  CKTGNITAIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           DL     L    CN  +VSE    +  +L  G +P    +  LI   C +      + L 
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV----FNDLKERGY--VPDTVMYTTVI 311
             M      P+  TY  +I GLC++     A ++     ND  + G    P  + Y+ +I
Sbjct: 185 LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIII 244

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK+G   +A++++ EM  +G++P+  +Y+++IHG+C     +++K L  EM+D+G  
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              VT++ LI  LC  G+  EA  L E M Q+GI  ++ITYN+LI G+C  G +
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDL 358



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 155/336 (46%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S + L      A  +  +    D     G  P+  +  + I  LC+ G + EA
Sbjct: 267 GMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEA 326

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + G+  ++ T+NS + G   +   +   +L+  +   G          LI  
Sbjct: 327 KKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLING 386

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   KV E   L  ++L+ G  P  T +  L+    +K   G   +L   M     + +
Sbjct: 387 YCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSAN 446

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  Y   ++GLCK+    EA  +FN+LK   +  +   Y+ +I GLCK G L  A +++ 
Sbjct: 447 SQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWELFE 506

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++  +GL P+  TYN MIHG+C++  ++ A  L ++M + G     + YNTL+ G C   
Sbjct: 507 KLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGN 566

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + +E   L  +M QK +  +  +   ++   CK+ K
Sbjct: 567 KLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEK 602



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG S +     +  D L +      AM+    L S  F  N  +    I  LC++G +E 
Sbjct: 441 YGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLET 500

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A+  F KL + G+   + T+N  + G  K+ + D    L+  + E+G          L+ 
Sbjct: 501 AWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLC 560

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            FC   K+ E  +LL ++++  + P   +   ++   C+ + + +  +LL
Sbjct: 561 GFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLL 610


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 171/340 (50%), Gaps = 15/340 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S DL +CN+L +   ++    +A  FL      GF P+  +    I   C    IEEA
Sbjct: 101 GVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEA 160

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
               +++ EMG+   +  + + +    K    D    L++         D++    L+  
Sbjct: 161 MSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNG 220

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+  +   LLR +++  + P+   FN LI  F ++       EL + M+  + AP+
Sbjct: 221 LCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPN 280

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +INGLC   +  EA ++F  ++ +G  PD V YT++I+G CK   + DA K+++
Sbjct: 281 IFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFY 340

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL  N  TY ++I G+  +     A+ +   M+ +G      TYN L+  LC +G
Sbjct: 341 EMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNG 400

Query: 389 RTDEAYHLFEEMAQK---GIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +FE+M ++   G+  ++ TYN L+ G C  GK+
Sbjct: 401 KVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKL 440



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 134/279 (48%), Gaps = 9/279 (3%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGYLI 206
           EA   FS + E     SI  +   L    K+ + D+V  L          +DL     L+
Sbjct: 54  EALDLFSHMVESRPLPSIIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNLLM 113

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC   +       L ++++ G  P+   F  LI+ FC          +++ MV     
Sbjct: 114 NCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIK 173

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD   Y  +I+ LCK+     A  +FN ++  G  PD VMYT++++GLC  G   DA  +
Sbjct: 174 PDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLL 233

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M+ + + P+  T+N++I  + +   L +AK L+ EM+         TY +LI GLC+
Sbjct: 234 LRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCM 293

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GR DEA  +F  M  KG F DV+ Y +LI G+CK  K+
Sbjct: 294 EGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKV 332



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 165/373 (44%), Gaps = 50/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+ +   L +        + AM  ++     G  P+       I  LC++G ++ A
Sbjct: 136 GFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNA 195

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---TDLVW------KLYHDLIESGYLIQA 208
              F++++  G+   +  + S + G     R    DL+       K+  D+I    LI A
Sbjct: 196 LSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDA 255

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ +  EL  ++++  + P    +  LI+  C +       ++ + M  +   PD
Sbjct: 256 FVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPD 315

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +ING CK +K  +A ++F ++ ++G   +T+ YTT+I G   +G    A++++ 
Sbjct: 316 VVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFG 375

Query: 329 EMIHKGLLPNEYTYNSM--------------------------------------IHGYC 350
            M+ +G+ PN  TYN +                                      +HG C
Sbjct: 376 HMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLC 435

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
               LE+A  +  +M  +      +TY  +I G+C  G+  +A +LF  +  KG+  +V+
Sbjct: 436 YNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSLPSKGVKPNVV 495

Query: 411 TYNTLIQGYCKEG 423
           TY T+I G  +EG
Sbjct: 496 TYTTMISGLFREG 508



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 64/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 196 YHDLIESGYLIQAFCNDGKV----------SEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +  L+   + ++AFCN  ++          +E  +L   ++E   +P    F +L++   
Sbjct: 23  FSRLLGLSFWVRAFCNYREILRNGLHSLQFNEALDLFSHMVESRPLPSIIDFTRLLNVIA 82

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           + K F  V  L   +     + D +T   ++N  C+S +   A      L + G+ PD  
Sbjct: 83  KMKKFDVVINLCKHLQIMGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIF 142

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +T++I+G C    + +A  M  +M+  G+ P+   Y ++I   C+  +++ A  L  +M
Sbjct: 143 TFTSLINGFCLGNRIEEAMSMVNQMVEMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQM 202

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + G     V Y +L+ GLC  GR  +A  L   M ++ I  DVIT+N LI  + KEGK+
Sbjct: 203 ENYGIRPDVVMYTSLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKL 262

Query: 426 VN 427
           ++
Sbjct: 263 LD 264



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 129/281 (45%), Gaps = 15/281 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++ N L D+ V+      A +  +       +PN  +    I  LC  G ++EA   
Sbjct: 244 PDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGLCMEGRLDEARQM 303

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  ++  G F  +  + S + G  K  + +   K+++++ + G          LIQ F  
Sbjct: 304 FYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNTITYTTLIQGFGL 363

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR--NRAPDN 269
            GK +   E+   ++  G+ P    +N L+   C      +   +   M  R  +  P N
Sbjct: 364 VGKPNVAQEVFGHMVSRGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPN 423

Query: 270 F-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLC + K  +A  VF D+++R      + YT +I G+CK G + DA  ++ 
Sbjct: 424 IRTYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFC 483

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            +  KG+ PN  TY +MI G  R   + EA  L ++M + G
Sbjct: 484 SLPSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKMKEDG 524


>gi|359492658|ref|XP_002281859.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Vitis vinifera]
          Length = 939

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 170/333 (51%), Gaps = 9/333 (2%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAF 158
            SP +   N L   L ++R      D L   G    +PN  +    I   C+ G++++AF
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC------ND 212
            ++ ++ E G+  +I   ++ + G  ++ R D    L   +++ G+     C        
Sbjct: 633 SSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRY 692

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
             + +  + L +  +  L+P N  +N  I+  C+             +  +   PDNFTY
Sbjct: 693 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 752

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G   +    EA+R+ +++  RG VP+ V Y  +I+GLCK   +  A++++ ++  
Sbjct: 753 CTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQ 812

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KGL PN  TYN++I GYC+I N++ A +L  +M+++G   + VTY+ LI GLC HG  + 
Sbjct: 813 KGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIER 872

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  L  +M + G+   +I Y TL+QGY + G++
Sbjct: 873 SMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEM 905



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 178/373 (47%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L SCN L ++LV   E          +   G  P+   + + +   C+ G ++EA
Sbjct: 186 GRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEA 245

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI--------------------------------- 184
                K++ +GV  +I T++S + G +                                 
Sbjct: 246 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 305

Query: 185 -----KIDRTDLVWK-------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                K+D  + V +       L  D    G LI  +C  GK+ +   LL ++L  GL  
Sbjct: 306 YCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKT 365

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
                N LI+ +C++        ++  MV  N  PD+++Y  +++G C+     EA+ + 
Sbjct: 366 NLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLC 425

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + + + G  P  + Y T++ GLC++G   DA ++W  M+ +G+ P+E  Y++++ G  ++
Sbjct: 426 DKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKM 485

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           +N E A  L K++L +G+ ++ +T+NT+I+GLC  G+  EA  +F++M   G   D ITY
Sbjct: 486 ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITY 545

Query: 413 NTLIQGYCKEGKI 425
            TLI GYCK   +
Sbjct: 546 RTLIDGYCKASNV 558



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 191/421 (45%), Gaps = 36/421 (8%)

Query: 35  ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQ 94
           ES     E+  ++C++   +     + L+    F F+D +        + N   S+ FFQ
Sbjct: 35  ESHPAPPELVSRICRLVLLRRCNAISKLN----FVFSDDIVDAVLRNLRLNPTASLGFFQ 90

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---------------------- 132
           ++     F P++ S   L   L   R +     +L+                        
Sbjct: 91  FVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYR 150

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
            F+ +P   ++ ++   E GL + A   F  + + G   S+++ NS L   +K   T   
Sbjct: 151 EFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTA 210

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             +Y  +I  G          ++ AFC DGKV E    ++++   G+ P    ++ LI+ 
Sbjct: 211 HYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLING 270

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVP 302
           +    +      +L  M  +  + +  TY  +I G CK  K  EA +V   ++E    VP
Sbjct: 271 YVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVP 330

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   Y  +I G C+ G + DA ++  EM+  GL  N +  NS+I+GYC+   + EA+ + 
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+D      + +YNTL+ G C  G T EA++L ++M Q+GI   V+TYNTL++G C+ 
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 423 G 423
           G
Sbjct: 451 G 451



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 162/341 (47%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S  G S ++V+  +L     +      A KV     +     P+  +  + I   C +G 
Sbjct: 288 SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGK 347

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLV------WKLYHDLIESGY 204
           I++A     ++  +G+  ++   NS + G  K   I   + V      W L  D      
Sbjct: 348 IDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNT 407

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  +C +G  SE + L  ++L++G+ P    +N L+   C    F    ++ H M+ R 
Sbjct: 408 LLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 467

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            APD   Y  +++GL K      A  ++ D+  RG+    + + T+I GLCKMG + +A 
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAE 527

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ +M   G  P+  TY ++I GYC+  N+ +A ++   M  +    +   YN+LI+GL
Sbjct: 528 EIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGL 587

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               R  E   L  EM  +G+  +++TY  LI G+CKEG +
Sbjct: 588 FKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 163/339 (48%), Gaps = 13/339 (3%)

Query: 101 GFSPDLVSCNVLFD---SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ + L +   SL +  A K  + F+   G S N  +  L I+  C+   ++EA
Sbjct: 256 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315

Query: 158 FCAFSKLKE-MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                 ++E   +    + +   + G  +  + D   +L  +++  G          LI 
Sbjct: 316 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G++ E   ++ ++++  L P++ ++N L+  +C + +      L   M+     P
Sbjct: 376 GYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEP 435

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  ++ GLC+     +A ++++ + +RG  PD V Y+T++ GL KM     A  +W
Sbjct: 436 TVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLW 495

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++ +G   +  T+N+MI G C++  + EA+ +  +M D G     +TY TLI G C  
Sbjct: 496 KDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKA 555

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               +A+ +   M ++ I   +  YN+LI G  K  ++V
Sbjct: 556 SNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLV 594



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 160/395 (40%), Gaps = 96/395 (24%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD V  + L D L +   F+ A      + + GF+ +  +    I  LC+ G + EA
Sbjct: 467 GVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEA 526

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F K+K++G      T+ +                          LI  +C    V +
Sbjct: 527 EEIFDKMKDLGCSPDGITYRT--------------------------LIDGYCKASNVGQ 560

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            +++   +  + + P    +N LIS   + +    V++LL  M  R   P+  TY  +I+
Sbjct: 561 AFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALID 620

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG--- 334
           G CK     +A+  + ++ E G   + ++ +T++ GL ++G + +A  +  +M+  G   
Sbjct: 621 GWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFP 680

Query: 335 -----------------------------LLPNEYTYNSMI------------------- 346
                                        LLPN   YN  I                   
Sbjct: 681 DHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSML 740

Query: 347 ----------------HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
                           HGY    N++EA RL  EML +G     VTYN LI GLC     
Sbjct: 741 SLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENV 800

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D A  LF ++ QKG+F +V+TYNTLI GYCK G +
Sbjct: 801 DRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/322 (23%), Positives = 134/322 (41%), Gaps = 46/322 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P++V+   L D   +     +AF    +  ++ G S N       +  L   G I+E
Sbjct: 607 GLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTEN-GLSANIIICSTMVSGLYRLGRIDE 665

Query: 157 AFCAFSKLKEMGVFG------------------------SIKT--------WNSALLGCI 184
           A     K+ + G F                         S KT        +N A+ G  
Sbjct: 666 ANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLC 725

Query: 185 KIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           K  + D   + +  L   G+         LI  +   G V E + L  ++L  GLVP   
Sbjct: 726 KTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIV 785

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +N LI+  C+ +N  R   L H +  +   P+  TY  +I+G CK      A+++ + +
Sbjct: 786 TYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKM 845

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            E G  P  V Y+ +I+GLCK G +  + K+  +MI  G+      Y +++ GY R   +
Sbjct: 846 IEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEM 905

Query: 356 EEAKRLHKEMLDKGYGETTVTY 377
           ++  +L+  M  +    T +++
Sbjct: 906 QKIHKLYDMMHIRCLSTTAISH 927



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T F+ ++  + EK        +   M    R P   +   ++N L K+ +   A+ V+  
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQ 216

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G VPD  M + +++  CK G + +A     +M + G+ PN  TY+S+I+GY  + +
Sbjct: 217 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGD 276

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYN 413
           +E AK + K M +KG     VTY  LI G C   + DEA  +   M ++  +  D   Y 
Sbjct: 277 VEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYG 336

Query: 414 TLIQGYCKEGKI 425
            LI GYC+ GKI
Sbjct: 337 VLIDGYCRTGKI 348



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 9/248 (3%)

Query: 187 DRTDLVWK----LYHDLIES----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           DR +++W     +Y +   S      +++ +   G       +   + + G +P   + N
Sbjct: 136 DRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCN 195

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            L++   +         +   M+     PD F    ++N  CK  K  EA      ++  
Sbjct: 196 SLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 255

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  P+ V Y ++I+G   +G +  A+ +   M  KG+  N  TY  +I GYC+   ++EA
Sbjct: 256 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315

Query: 359 KRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           +++ + M ++         Y  LI G C  G+ D+A  L +EM + G+  ++   N+LI 
Sbjct: 316 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375

Query: 418 GYCKEGKI 425
           GYCK G+I
Sbjct: 376 GYCKRGEI 383


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  171 bits (432), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 160/340 (47%), Gaps = 15/340 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+VS N L   L   +    A+    S    G+ P   +  + I  L +   + EA
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEA 312

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           F  FS L + G+     T+   + G  K  R +    +  D+ E G          +I  
Sbjct: 313 FELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVING 372

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C + +V E   LL  +   G  P   +FN LI   C    + +       M+ R   P 
Sbjct: 373 LCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPT 432

Query: 269 NFTYEEVINGLCKSRKR---LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             TY  +++GLCK+R+     EA  +F+ + E+G VPD V Y+ +I GL K G L DAR+
Sbjct: 433 VVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARR 492

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M  KG +PN YTYNS+I G C +D ++EA  L   M++KG    T+TY T+I+ LC
Sbjct: 493 LLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALC 552

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                D+A  LF+   + G+      Y +LI G C   ++
Sbjct: 553 KQEMVDKALALFDGSLEAGVVPTSGMYFSLIDGLCAVARV 592



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 166/334 (49%), Gaps = 16/334 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+ + N+    L  A     A    D     GF PN  +    +  LC  G + +A   +
Sbjct: 49  DISTFNIYISGLCRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALY 108

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
            ++ + G    + T+N+ L G  K+ + D   K++   ++ G+         LI  FC  
Sbjct: 109 ERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKA 168

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            K+ E   +L++++ + LVP+   +N L++  C+    GRV E    +V +  +P+  TY
Sbjct: 169 DKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKN---GRVDEARMLIVDKGFSPNVITY 225

Query: 273 EEVINGLCKSRKRLEAYR-VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
             +I+GLC+  +RLE+ R +   +   G  PD V Y  +IHGL +   + +A K++  ++
Sbjct: 226 STLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVL 285

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G  P   TYN +I G  + D + EA  L   ++  G     +TY   I GLC  GR +
Sbjct: 286 RQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVE 345

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  + ++M +KG   DV+++N +I G CKE ++
Sbjct: 346 DALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRV 379



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 162/336 (48%), Gaps = 47/336 (13%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEA-----------FC----------------------- 159
           +SP+  ++ + ++ L +SG IE+A            C                       
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGLCRASRIGDAQT 71

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F  +++ G + +  T+N+ L G     R      LY  +I++GY         L+  FC
Sbjct: 72  VFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFC 131

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK+ E  ++    ++ G VP+   +N LI+ FC+         +L  MV+ +  PD  
Sbjct: 132 KVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVV 191

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK-MGWLGDARKMWFE 329
           TY  ++NGLCK+ +  EA  +  D   +G+ P+ + Y+T+I GLC+ +  L  AR++  +
Sbjct: 192 TYNSLVNGLCKNGRVDEARMLIVD---KGFSPNVITYSTLISGLCRELRRLESARQLLEK 248

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+  G  P+  +YN++IHG  R   + EA +L   +L +GY     TYN LI GL    R
Sbjct: 249 MVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDR 308

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA+ LF  + + G+  D ITY   I G CK G++
Sbjct: 309 VNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRV 344



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 169/338 (50%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+SPD+V+ N L     +      A+   D     GF P+  +    I   C++  ++EA
Sbjct: 115 GYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEA 174

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------LIESGYLIQAFCN 211
                ++    +   + T+NS + G  K  R D    L  D      +I    LI   C 
Sbjct: 175 QRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCR 234

Query: 212 D-GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           +  ++    +LL +++ +G  P+  ++N LI     ++      +L  +++ +   P+  
Sbjct: 235 ELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVP 294

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GL K  +  EA+ +F+ L + G  PD + YT  I GLCK G + DA  M  +M
Sbjct: 295 TYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDM 354

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG +P+  ++N++I+G C+   ++EA+ L   M  KG     +++NTLI G C  G+ 
Sbjct: 355 DEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKW 414

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCK---EGKI 425
            +A   F+EM ++G+   V+TYN L+ G CK   EG+I
Sbjct: 415 KKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 452



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 81/234 (34%), Positives = 132/234 (56%), Gaps = 5/234 (2%)

Query: 190 DLVWKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           D + ++Y  D    G L+++    GK+ + +  + Q+L  GL   +T FN  IS  C   
Sbjct: 6   DKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDIST-FNIYISGLCRAS 64

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
             G    +   M      P+  TY  +++GLC   +  +A  ++  + + GY PD V Y 
Sbjct: 65  RIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYN 124

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T++HG CK+G L +A K++   + +G +P+  TYN++I+G+C+ D L+EA+R+ + M+ +
Sbjct: 125 TLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE 184

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                 VTYN+L+ GLC +GR DEA  L   +  KG   +VITY+TLI G C+E
Sbjct: 185 SLVPDVVTYNSLVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRE 235



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 37/206 (17%)

Query: 257 LHTM---VARNRAPDNF----------------------------------TYEEVINGL 279
           +HT+   + R  +PD +                                  T+   I+GL
Sbjct: 1   MHTVYDKLVRIYSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLCDISTFNIYISGL 60

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C++ +  +A  VF+ +++ G+ P+ + Y  ++ GLC  G + DA+ ++  MI  G  P+ 
Sbjct: 61  CRASRIGDAQTVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDV 120

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN+++HG+C++  L+EA ++    + +G+    VTYN LI G C   + DEA  + + 
Sbjct: 121 VTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQR 180

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M  + +  DV+TYN+L+ G CK G++
Sbjct: 181 MVSESLVPDVVTYNSLVNGLCKNGRV 206


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 168/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D V    L   L +    + A+D L   D     PN       I  +C+   + +A
Sbjct: 157 GFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDA 216

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKLY-----HDLIESGYLIQA 208
           F  +S++   G+  ++ T+++ + G   +    D  DL  K+       D+     L+  
Sbjct: 217 FDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDG 276

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC DGK+ EG  +   +++ G+ P    +  L+  +C  K   +   +L+TM  R   PD
Sbjct: 277 FCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPD 336

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+G CK +K  EA  +F ++  +  +PD V Y ++I GLCK+G +  A K+  
Sbjct: 337 IQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVD 396

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G+ P+  TY+S++   C+   +++A  L  ++ D+G      TY  LI GLC  G
Sbjct: 397 EMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGG 456

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R ++A+++FE++  KG    V TY  +I G+C +G
Sbjct: 457 RLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKG 491



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 152/302 (50%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT--- 189
           G+ PN  +    I+ LC  G I +A      +  MG       + + + G  K+  T   
Sbjct: 122 GYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGFQLDQVGYGTLIHGLCKVGETRAA 181

Query: 190 -DLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            DL+ ++  +L++        +I   C D  V++ ++L  +++  G+ P    ++ LIS 
Sbjct: 182 LDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 241

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           F          +L + M+  N  PD +T+  +++G CK  K  E   VF  + ++G  P+
Sbjct: 242 FFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPN 301

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y +++ G C +  +  A+ + + M  +G+ P+  +YN +I G+C+I  ++EA  L K
Sbjct: 302 VVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFK 361

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  K      VTYN+LI GLC  G+   A  L +EM  +G+  D+ITY++++   CK  
Sbjct: 362 EMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNH 421

Query: 424 KI 425
           ++
Sbjct: 422 QV 423



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/423 (24%), Positives = 189/423 (44%), Gaps = 31/423 (7%)

Query: 19  FQNPNTQLRNLSIETKESQQLYTEIAKQVCKI--TRTKPRWEQTLLSDIPSFNFN--DPL 74
           F N N  +   S+ ++  +Q  T  A +  KI  +  K +   T+LS      F   +P+
Sbjct: 51  FHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPV 110

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---S 131
            F                FQ  H   G+ P+ ++   L   L        A+ F D   +
Sbjct: 111 LFH---------------FQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVA 155

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            GF  +       I  LC+ G    A     ++    V  ++  +++ + G  K    + 
Sbjct: 156 MGFQLDQVGYGTLIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKDKHVND 215

Query: 192 VWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
            + LY +++  G          LI  F   G++ +  +L  +++ + + P+   FN L+ 
Sbjct: 216 AFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVD 275

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC+         +   M+ +   P+  TY  +++G C  ++  +A  +   + +RG  P
Sbjct: 276 GFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNP 335

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   Y  +I G CK+  + +A  ++ EM HK ++P+  TYNS+I G C++  +  A +L 
Sbjct: 336 DIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLV 395

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            EM D+G     +TY++++  LC + + D+A  L  ++  +GI  ++ TY  LI G CK 
Sbjct: 396 DEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKG 455

Query: 423 GKI 425
           G++
Sbjct: 456 GRL 458


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 164/334 (49%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L+  + LF  +   + + + +D    ++  G + N  +L + I C C    +  AF A
Sbjct: 70  PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G      T+++ + G     R     +L   ++E G+         L+   C 
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKVS+   L+ +++E G  P    +  ++   C+        ELL  M  R    D   
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK      A+ +FN+++ +G+  D ++YTT+I G C  G   D  K+  +MI
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + P+   ++++I  + +   L EA+ LHKEM+ +G    TVTY +LI G C   + D
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A H+ + M  KG   ++ T+N LI GYCK   I
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLI 403



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 158/336 (47%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ + L + L        A++ +D     G  P   +L   +  LC +G + +A
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ E G   +  T+   L    K  +T L  +L           D ++   +I  
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG +   + L  ++   G   +   +  LI  FC    +   ++LL  M+ R   PD
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              +  +I+   K  K  EA  +  ++ +RG  PDTV YT++I G CK   L  A  M  
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ KG  PN  T+N +I+GYC+ + +++   L ++M  +G    TVTYNTLI G C  G
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + + A  LF+EM  + +  D+++Y  L+ G C  G+
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 168/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L++ N L + L        A+  +D    TGF PN  +    ++ +C+SG    A
Sbjct: 172 GHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALA 231

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K++E  +      ++  + G  K    D  + L++++   G+         LI+ 
Sbjct: 232 MELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRG 291

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G+  +G +LLR +++  + P+  AF+ LI  F ++       EL   M+ R  +PD
Sbjct: 292 FCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPD 351

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  +  +A  + + +  +G  P+   +  +I+G CK   + D  +++ 
Sbjct: 352 TVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFR 411

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +G++ +  TYN++I G+C +  LE AK L +EM+ +      V+Y  L+ GLC +G
Sbjct: 412 KMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNG 471

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A  +FE++ +  +  D+  YN +I G C   K+
Sbjct: 472 EPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 508



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 178/359 (49%), Gaps = 21/359 (5%)

Query: 81  KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPN 137
           K  + VLL  R  +      GF P+ V+   +   + ++    +AM+ L   +      +
Sbjct: 192 KVSDAVLLIDRMVET-----GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD 246

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
                + I  LC+ G ++ AF  F++++  G    I  + + + G     R D   KL  
Sbjct: 247 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLR 306

Query: 198 DLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           D+I+            LI  F  +GK+ E  EL +++++ G+ P+   +  LI  FC++ 
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
              + + +L  MV++   P+  T+  +ING CK+    +   +F  +  RG V DTV Y 
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYN 426

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK-EMLD 367
           T+I G C++G L  A++++ EM+ + + P+  +Y  ++ G C  DN E  K L   E ++
Sbjct: 427 TLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC--DNGEPEKALEIFEKIE 484

Query: 368 KGYGETTV-TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           K   E  +  YN +I G+C   + D+A+ LF  +  KG+  DV TYN +I G CK+G +
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSL 543



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 142/320 (44%), Gaps = 31/320 (9%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            +P+  +    I C  + G + EA     ++ + G+     T+ S + G  K ++ D   
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 194 KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            +   ++  G          LI  +C    + +G EL R++   G+V +   +N LI  F
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           CE        EL   MV+R   PD  +Y+ +++GLC + +  +A  +F  +++     D 
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDI 492

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +Y  +IHG+C    + DA  ++  +  KG+ P+  TYN MI G C+  +L EA  L ++
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE----------------------MAQ 402
           M + G+     TYN LI      G   ++  L EE                      M +
Sbjct: 553 MEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLK 612

Query: 403 KGIFRDVITYNTLIQGYCKE 422
            G   DV T+ TL++ +C E
Sbjct: 613 AGHEPDVFTFTTLLRPFCLE 632



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 160/372 (43%), Gaps = 39/372 (10%)

Query: 90  IRFFQWLHSHY---GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLEL 143
           +R  + LH      G SPD V+   L D   +      A   +D + S G  PN  +  +
Sbjct: 333 LREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------ 197
            I   C++ LI++    F K+   GV     T+N+ + G  ++ + ++  +L+       
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
              D++    L+   C++G+  +  E+  ++ +  +  +   +N +I   C         
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAW 512

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG- 313
           +L  ++  +   PD  TY  +I GLCK     EA  +F  ++E G+ P+   Y  +I   
Sbjct: 513 DLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAH 572

Query: 314 ---------------LCKMGWLGDARKMWF------EMIHKGLLPNEYTYNSMIHGYCRI 352
                          + + G+  DA  + F       M+  G  P+ +T+ +++  +C  
Sbjct: 573 LGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLE 632

Query: 353 DNLE--EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +N    +A  L K M   GY    VTYNT+I GL       +   + ++M ++G   + +
Sbjct: 633 ENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAV 692

Query: 411 TYNTLIQGYCKE 422
           T +T I G CK+
Sbjct: 693 TKSTFISGLCKQ 704



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y + + SG +      D K  +  +L +++      P    F++L S     K +  V +
Sbjct: 40  YRERLRSGIV------DIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLD 93

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M  +  A + +T   +IN  C+ RK   A+     + + GY PDTV ++T+I+GLC
Sbjct: 94  LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G + +A ++   M+  G  P   T N++++G C    + +A  L   M++ G+    V
Sbjct: 154 LEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEV 213

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY  ++  +C  G+T  A  L  +M ++ I  D + Y+ +I G CK+G + N
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 122/304 (40%), Gaps = 36/304 (11%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G   D V+ N L     E    +VA +      S    P+  S ++ +  LC++G  
Sbjct: 414 SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEP 473

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E+A   F K+++  +   I  +N  + G     + D  W L+  L   G          +
Sbjct: 474 EKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIM 533

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL--------- 256
           I   C  G +SE   L R++ EDG  P    +N LI     + +  + ++L         
Sbjct: 534 IGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGF 593

Query: 257 -------------LHTMVARNRAPDNFTYEEVINGLC--KSRKRLEAYRVFNDLKERGYV 301
                        L  M+     PD FT+  ++   C  ++    +A  +F ++K  GY 
Sbjct: 594 SVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYK 653

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+ V Y TVI GL     +     +  +M  +G  PN  T ++ I G C+ D    A  L
Sbjct: 654 PNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILL 713

Query: 362 HKEM 365
            ++M
Sbjct: 714 LRKM 717


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 165/335 (49%), Gaps = 13/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD V+ N + + L ++     A+  L+     GF+PN  S    +   C++  +E A   
Sbjct: 42  PDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWL 101

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
             ++   G    + ++ + + G  K+D+ D   ++   +I+          G L+  FC 
Sbjct: 102 LEQMVMRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCR 161

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PDNF 270
            G +    EL+R++ E G  P    +N ++   C  +      +L   M       PD F
Sbjct: 162 VGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVF 221

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +++ L KS K  +A R+   +  +G  P+ V Y++++HGLCK G L +A  +   M
Sbjct: 222 TYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRM 281

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G  PN  TYN++I G+C++  ++EA  L +EM+D G     VTY  L+   C  G+ 
Sbjct: 282 TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA 341

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++A  L E M +KG   ++ TYN+L+  +CK+ ++
Sbjct: 342 EDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEV 376



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+  VL D+  +    + A+  ++     G+ PN  +    +   C+   +E A
Sbjct: 320 GCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERA 379

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYLIQA 208
               S + + G   ++ ++N+ + G  K  +           L      D++    +I A
Sbjct: 380 CQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDA 439

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-AP 267
            C   +V   YEL   + E G  P    +N L+   C+ + F +   LL  M  +   +P
Sbjct: 440 MCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 499

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  VI+GLCKS++   AY++F  +   G  PD V Y+ VI  LCK  ++ +A  + 
Sbjct: 500 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVL 559

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  G  P   TY ++I G+C+  NL++A  + + +L KG     VT++  I  L   
Sbjct: 560 ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKR 619

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           GR  +A  L E M + G+  D +TYNTL++G+C   +
Sbjct: 620 GRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASR 656



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 158/338 (46%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+VS   + + L +      A   MD +   G  PN  +    +   C  G ++ A
Sbjct: 109 GCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGA 168

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
                K+ E G   +  T+N+ + G     + D   +L+ ++ ESG           ++ 
Sbjct: 169 VELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVD 228

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           +    GKV +   L+  ++  G  P    ++ L+   C+       + LL  M     +P
Sbjct: 229 SLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSP 288

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+G CK  +  EAY +  ++ + G  P+ V YT ++   CK G   DA  + 
Sbjct: 289 NIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLV 348

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ KG +PN +TYNS++  +C+ D +E A +L   M+ KG     V+YNT+IAGLC  
Sbjct: 349 EVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKA 408

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  E   L E+M       D++T+NT+I   CK  ++
Sbjct: 409 TKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRV 446



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 165/341 (48%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           +  G SP++V+ N + D   +      A   L+     G  PN  +  + +   C+ G  
Sbjct: 282 TRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKA 341

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           E+A      + E G   ++ T+NS L    K D  +   +L   +I+ G          +
Sbjct: 342 EDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 401

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   KV EG  LL Q+L +  VP+   FN +I   C+        EL + +     
Sbjct: 402 IAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGC 461

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            P+  TY  +++GLCKSR+  +A  +  ++ +++G  PD + Y TVI GLCK   +  A 
Sbjct: 462 TPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAY 521

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++ +M+  GL P++ TY+ +I   C+   ++EA  + + ML  G+    +TY TLI G 
Sbjct: 522 KLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 581

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G  D+A  + + +  KG + DV+T++  I    K G++
Sbjct: 582 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRL 622



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 163/341 (47%), Gaps = 30/341 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +++ F+ +       PD+ + + + DSLV++     A   ++   S G SPN  +    +
Sbjct: 203 ALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLL 262

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             LC++G ++EA     ++   G   +I T+N+                          +
Sbjct: 263 HGLCKAGKLDEATALLQRMTRSGCSPNIVTYNT--------------------------I 296

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C  G++ E Y LL ++++ G  P    +  L+  FC+         L+  MV +  
Sbjct: 297 IDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEKGY 356

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+ FTY  +++  CK  +   A ++ + + ++G VP+ V Y TVI GLCK   + +   
Sbjct: 357 VPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVL 416

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M+    +P+  T+N++I   C+   ++ A  L   + + G     VTYN+L+ GLC
Sbjct: 417 LLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLC 476

Query: 386 LHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
              R D+A +L  EM +K G   D+ITYNT+I G CK  ++
Sbjct: 477 KSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRV 517



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 123/222 (55%), Gaps = 2/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C+ G+ S+     R+ +     P++  +N +I+   +         LL  MV   
Sbjct: 16  ILRGLCDAGQCSDAVLHFRE-MSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNG 74

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP+ F+Y  V++G CK+ +   A  +   +  RG  PD V YTTVI+GLCK+  + +A 
Sbjct: 75  FAPNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVVSYTTVINGLCKLDQVDEAC 134

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +MI +G  PN  TY +++ G+CR+ +L+ A  L ++M ++GY    +TYN ++ GL
Sbjct: 135 RVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGL 194

Query: 385 CLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
           C   + D A  LF+EM + G    DV TY+T++    K GK+
Sbjct: 195 CSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKV 236



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 15/309 (4%)

Query: 91  RFFQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           R  Q L S    G  P++VS N +   L +A      +  L+   S    P+  +    I
Sbjct: 378 RACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFNTII 437

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
             +C++  ++ A+  F+ ++E G   ++ T+NS + G  K  R D    L          
Sbjct: 438 DAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGC 497

Query: 198 --DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D+I    +I   C   +V   Y+L  Q+L DGL P++  ++ +IS  C+ +     + 
Sbjct: 498 SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANN 557

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M+     P   TY  +I+G CK+    +A  +   L  +G  PD V ++  I  L 
Sbjct: 558 VLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLS 617

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G L  A ++   M+  GL+P+  TYN+++ G+C     E+A  L + M   G      
Sbjct: 618 KRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNA 677

Query: 376 TYNTLIAGL 384
           TY TL+  L
Sbjct: 678 TYTTLVGHL 686



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KGL  +   + S++ G C      +A  LH   + K     +VTYNT+I GL    R
Sbjct: 1   MNRKGLKAHAGVHKSILRGLCDAGQCSDAV-LHFREMSKTCPPDSVTYNTMINGLSKSDR 59

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            D+A  L EEM   G   +V +YNT++ G+CK  ++ N
Sbjct: 60  LDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVEN 97



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 80/183 (43%), Gaps = 15/183 (8%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           F Q L    G +PD V+ +++  SL + R    A + L+     GF P   +    I   
Sbjct: 524 FLQMLSD--GLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGF 581

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C++G +++A      L   G +  + T++  +    K  R     +L   ++ +G     
Sbjct: 582 CKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDT 641

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR-VSELLH 258
                L++ FC+  +  +  +L   + + G  P+N  +  L+    +KK++   ++E+  
Sbjct: 642 VTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSK 701

Query: 259 TMV 261
           +MV
Sbjct: 702 SMV 704


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L   L +    + +          G  PN  +  ++IQ LC  G I+EA
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G+   + ++N+ + G  K  +        H ++ SG          +I  
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G +    ++LR  +  G +P+   ++ LI+  C   +  R   + +  + +     
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHS 390

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  ++ GL K    L+A ++  D+ E G  PD   Y  V++GLCKMG L DA  +  
Sbjct: 391 IILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN 450

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           + I KG +P+ +T+N++I GYC+  N+++A  +   ML  G     +TYNTL+ GLC   
Sbjct: 451 DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D     F+ M +KG   ++ITYN LI+ +CK+ K+
Sbjct: 511 KLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKV 547



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 154/310 (49%), Gaps = 12/310 (3%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MDF D     P+  S    +  L E G   +A   + ++K++G++  + T    +     
Sbjct: 102 MDFYDC---EPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCI 158

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R     +L +++   G          +I  F  +    E Y L  ++L+ G+ P+   
Sbjct: 159 TGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILT 218

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FNKLI   C+K N     +L   ++ R   P+ FT+   I GLC+     EA R+   + 
Sbjct: 219 FNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIV 278

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  PD + Y T+I G CK   L +A     +M++ G+ PNE+TYN++I+G+C+   ++
Sbjct: 279 SEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQ 338

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A ++ ++ + KG+     TY++LI GLC  G  + A  +F E  +KG    +I YNTL+
Sbjct: 339 NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 417 QGYCKEGKIV 426
           +G  K+G ++
Sbjct: 399 KGLSKQGLVL 408



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 14/337 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           Y   P + S N + + LVE    ++A KV M   D  G  P+  +  + ++  C +G   
Sbjct: 105 YDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKD-IGIYPDVYTHTIRMKSFCITGRPT 163

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A    + +   G   +  ++ + + G  K +     + L+ ++++ G          LI
Sbjct: 164 AALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLI 223

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G V E  +L  +V++ G+ P    FN  I   C K      + LL ++V+    
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  +Y  +I G CK  K +EA    + +   G  P+   Y T+I+G CK G + +A K+
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             + + KG +P+E+TY+S+I+G C   ++  A  +  E ++KG+  + + YNTL+ GL  
Sbjct: 344 LRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSK 403

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G   +A  L ++M + G   D+ TYN ++ G CK G
Sbjct: 404 QGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMG 440



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 173/380 (45%), Gaps = 18/380 (4%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           +Q +  DI +FN          L ++ NV  S + F  +    G  P+L + N+    L 
Sbjct: 209 KQGICPDILTFNK-----LIHVLCKKGNVQESEKLFSKVMKR-GVCPNLFTFNIFIQGLC 262

Query: 118 EARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
              A   A   L+S    G +P+  S    I   C+   + EA C   K+   GV  +  
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEF 322

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
           T+N+ + G  K        K+  D +  G+         LI   CNDG ++    +  + 
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEA 382

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           +E G       +N L+    ++    +  +L+  M+    +PD +TY  V+NGLCK    
Sbjct: 383 MEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            +A  + ND   +G +PD   + T+I G CK   +  A ++   M+  G+ P+  TYN++
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           ++G C+   L+      K ML+KG     +TYN LI   C   +  EA  LF+EM  +G+
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             D++T  TLI G C  G++
Sbjct: 563 TPDIVTLCTLICGLCSNGEL 582



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 150/304 (49%), Gaps = 9/304 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  +    I  LC+ G ++E+   FSK+ + GV  ++ T+N  + G  +    D  
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L   ++  G          LI  FC   K+ E    L +++  G+ P    +N +I+ 
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           FC+        ++L   + +   PD FTY  +INGLC       A  VF +  E+G+   
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHS 390

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            ++Y T++ GL K G +  A ++  +M+  G  P+ +TYN +++G C++  L +A  +  
Sbjct: 391 IILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN 450

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + + KG      T+NTLI G C     D+A  + + M   GI  DVITYNTL+ G CK  
Sbjct: 451 DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 424 KIVN 427
           K+ N
Sbjct: 511 KLDN 514



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 190/407 (46%), Gaps = 40/407 (9%)

Query: 33  TKESQQLYTEIAKQ-VCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIR 91
            +ES++L++++ K+ VC      P            F FN    F + L ++  +  + R
Sbjct: 232 VQESEKLFSKVMKRGVC------PNL----------FTFN---IFIQGLCRKGAIDEAAR 272

Query: 92  FFQWLHSHYGFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYI 145
             + + S  G +PD++S N L         LVEA  +   +  + ++G  PN  +    I
Sbjct: 273 LLESIVSE-GLTPDVISYNTLICGFCKHSKLVEAECY---LHKMVNSGVEPNEFTYNTII 328

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C++G+++ A          G      T++S + G       +    ++++ +E G+ 
Sbjct: 329 NGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFK 388

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L++     G V +  +L++ ++E G  P+   +N +++  C+       + +
Sbjct: 389 HSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGI 448

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L+  +A+   PD FT+  +I+G CK R   +A  + + +   G  PD + Y T+++GLCK
Sbjct: 449 LNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCK 508

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              L +    +  M+ KG  PN  TYN +I  +C+   + EA  L KEM  +G     VT
Sbjct: 509 ARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVT 568

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKE 422
             TLI GLC +G  D+AY LF  + ++  F      +N +I  +C++
Sbjct: 569 LCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEK 615



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 171/359 (47%), Gaps = 30/359 (8%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST 132
           P      ++ QN+ L +++ F  + +  GF   L +   + + L     F+   D L   
Sbjct: 7   PKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEM 66

Query: 133 GFSPNPNSLE-LYIQCLCE---SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
             + +   LE +YI  + +    G ++EA   F ++       S++++N+ +        
Sbjct: 67  RKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIM-------- 118

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
                   + L+E GY  QA          +++  ++ + G+ P+       +  FC   
Sbjct: 119 --------NILVEYGYFSQA----------HKVYMRMKDIGIYPDVYTHTIRMKSFCITG 160

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                  LL+ M  +    +  +Y  VI+G  K   ++EAY +F+++ ++G  PD + + 
Sbjct: 161 RPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFN 220

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            +IH LCK G + ++ K++ +++ +G+ PN +T+N  I G CR   ++EA RL + ++ +
Sbjct: 221 KLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSE 280

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G     ++YNTLI G C H +  EA     +M   G+  +  TYNT+I G+CK G + N
Sbjct: 281 GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 151/396 (38%), Gaps = 85/396 (21%)

Query: 95  WLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
           +LH   + G  P+  + N + +   +A   + A   L      GF P+  +    I  LC
Sbjct: 308 YLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLC 367

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
             G +  A   F +  E G   SI  +N+ + G  K        +L  D++E G      
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIW 427

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               ++   C  G +S+   +L   +  G +P+   FN LI  +C+++N  +  E+L TM
Sbjct: 428 TYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM 487

Query: 261 VARNRAPDNFTYEEVINGLCKSRKR----------------------------------- 285
           ++    PD  TY  ++NGLCK+RK                                    
Sbjct: 488 LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKV 547

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA---------------------- 323
            EA  +F ++K RG  PD V   T+I GLC  G L  A                      
Sbjct: 548 SEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNI 607

Query: 324 --------------RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
                          K++ +M      P+ YTY  MI  YC+  N++ A     E + KG
Sbjct: 608 MINAFCEKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKG 667

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
              +  T   ++  LC+  R  EA  +   M Q GI
Sbjct: 668 LVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 117/262 (44%), Gaps = 31/262 (11%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +Q N+  +I     + SH G +PD+++ N L + L +AR     +D   +    G +PN 
Sbjct: 473 KQRNMDKAIEILDTMLSH-GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNI 531

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I+  C+   + EA   F ++K  G                          L  D
Sbjct: 532 ITYNILIESFCKDRKVSEAMELFKEMKTRG--------------------------LTPD 565

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA-FNKLISRFCEKKNFGRVSELL 257
           ++    LI   C++G++ + YEL   + ++     +TA FN +I+ FCEK N     +L 
Sbjct: 566 IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLF 625

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           H M   + APDN+TY  +I+  CK+     A+    +   +G VP       V++ LC  
Sbjct: 626 HKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVT 685

Query: 318 GWLGDARKMWFEMIHKGLLPNE 339
             L +A  +   M+  G++P E
Sbjct: 686 HRLSEAVVIINLMVQNGIVPEE 707


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 159/323 (49%), Gaps = 27/323 (8%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
           SPD V+ N +  +L +A+A   AM+ L +    PN  +    +   C SG  E+A   F 
Sbjct: 43  SPDAVTYNSIIAALSKAQAMDRAMEVL-TVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFR 101

Query: 163 KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELL 222
           K+   G+   + T+NS                          L+   C +GK +E  ++ 
Sbjct: 102 KMCSDGIEPDVVTYNS--------------------------LMDYLCKNGKCTEARKIF 135

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
             +++ GL P+ T +  L+  +  K     + +LL  MV      D+  +  +I    K 
Sbjct: 136 DSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQ 195

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            K  E   VF+ ++++G  P+ V Y TVI GLCK+G L DA   + +MI KGL PN   Y
Sbjct: 196 EKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVY 255

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
            S+IH  C  D  E+A+ L  E+LD+G     V +NT++  LC  GR  E+  LF+ +  
Sbjct: 256 TSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGH 315

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
            G+  DVITY+TLI GYC  GK+
Sbjct: 316 IGVNPDVITYSTLIDGYCLAGKM 338



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 161/350 (46%), Gaps = 13/350 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I  F+ + S  G  PD+V+ N L D L +      A    DS    G  P+  +    +
Sbjct: 96  AIGIFRKMCSD-GIEPDVVTYNSLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLL 154

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
                 G + E     + + + G+      +N  +    K ++ D V  ++  + + G  
Sbjct: 155 HGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLT 214

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   +I   C  G++ +      Q+++ GL P    +  LI   C    + +  EL
Sbjct: 215 PNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVVVYTSLIHALCTYDKWEKAEEL 274

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++ +   P+   +  +++ LCK  + +E+ ++F+ L   G  PD + Y+T+I G C 
Sbjct: 275 IFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLLGHIGVNPDVITYSTLIDGYCL 334

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A K+   M+  GL P+  TY+++I+GYC+I+ +E+A  L KEM   G     +T
Sbjct: 335 AGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYCKINRMEDALALFKEMESNGVNPDIIT 394

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YN ++ GL    RT  A  L+  + + G   ++ TYN ++  + K   ++
Sbjct: 395 YNIILHGLFRTRRTAAAKELYARITESGTQLELSTYNIILMDFAKTNSLM 444



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/296 (22%), Positives = 141/296 (47%), Gaps = 5/296 (1%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  S    I  L + G +++A+  + ++ +  V     T+NS +    K    D   ++
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 196 YHDLIESG-----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              ++         ++  +C+ G+  +   + R++  DG+ P+   +N L+   C+    
Sbjct: 69  LTVMVMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKC 128

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               ++  +MV R   PD  TY  +++G       +E + +   + + G   D  ++  +
Sbjct: 129 TEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNIL 188

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I    K   + +   ++ +M  +GL PN   Y ++I G C++  L++A    ++M+DKG 
Sbjct: 189 ICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               V Y +LI  LC + + ++A  L  E+  +GI  +++ +NT++   CKEG+++
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVI 304



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 78/174 (44%), Gaps = 14/174 (8%)

Query: 39  LYTEIAKQVCKITRTKPRWEQT--LLSDIPSFNFN-DPLFFREFLK---QQNNVLLSIRF 92
           +YT +   +C    T  +WE+   L+ +I     N + +FF   L    ++  V+ S + 
Sbjct: 254 VYTSLIHALC----TYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKL 309

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
           F  L  H G +PD+++ + L D    A     AM  L    S G  P+  +    I   C
Sbjct: 310 FDLL-GHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYSTLINGYC 368

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
           +   +E+A   F +++  GV   I T+N  L G  +  RT    +LY  + ESG
Sbjct: 369 KINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESG 422


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 172/347 (49%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYI 145
           + LH H      GF  D VS   L + L    E R+    +  ++     PN       I
Sbjct: 98  KSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTII 157

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC+  L+ EA+  +S++   G+F ++ T+++ + G     +    + L +++I     
Sbjct: 158 DGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNIN 217

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+ A C +GKV E   LL  + ++G+ P   ++N L+  +C         ++
Sbjct: 218 PNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQM 277

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            HTMV +   P+ ++Y  +I+ LCKS++  EA  +  ++  +  VP+TV Y+++I G CK
Sbjct: 278 FHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCK 337

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A  +  EM H+G   +  TY S++   C+  NL++A  L  +M ++G      T
Sbjct: 338 LGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYT 397

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           Y  LI GLC  GR   A  LF+ +  KG   +V TYN +I G CKEG
Sbjct: 398 YTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEG 444



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 168/339 (49%), Gaps = 16/339 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P ++  N +  SLV+ + +  A+     +   G  P+  +L + I C C  G +  +F 
Sbjct: 7   TPPIMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLGQMTFSFT 66

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHD-LIESGY---------LIQA 208
              K+ ++G   +  T N+ + G C+K +    +   +HD ++  G+         L+  
Sbjct: 67  VLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLH--FHDKVVAQGFQMDQVSYATLLNG 124

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+     +LLR + +    P    +N +I   C+ K      +L   M AR   P+
Sbjct: 125 LCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPN 184

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C + + +EA+ + N++  +   P+   YT ++  LCK G + +A+ +  
Sbjct: 185 VITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLA 244

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  +G+ PN  +YN+++ GYC I  ++ AK++   M+ KG      +YN +I  LC   
Sbjct: 245 VMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSK 304

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           R DEA +L  E+  K +  + +TY++LI G+CK G+I +
Sbjct: 305 RVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITS 343



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 168/383 (43%), Gaps = 48/383 (12%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I  F+ +    G  PDL + N+L +          +   L      G+ PN  +L   +
Sbjct: 29  AISLFKQMQVK-GIEPDLFTLNILINCFCHLGQMTFSFTVLGKILKLGYQPNTITLNTLM 87

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
           + LC  G ++++     K+   G      ++ + L G  KI  T    KL          
Sbjct: 88  KGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLLNGLCKIGETRSALKLLRMIEDRSTR 147

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            +++    +I   C D  V+E Y+L  ++   G+ P    ++ LI  FC          L
Sbjct: 148 PNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGL 207

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L+ M+ +N  P+ +TY  +++ LCK  K  EA  +   + + G  P+ V Y T++ G C 
Sbjct: 208 LNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCL 267

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYN--------------------------------- 343
           +G + +A++M+  M+ KG+ PN Y+YN                                 
Sbjct: 268 IGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVT 327

Query: 344 --SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
             S+I G+C++  +  A  L KEM  +G     VTY +L+  LC +   D+A  LF +M 
Sbjct: 328 YSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMK 387

Query: 402 QKGIFRDVITYNTLIQGYCKEGK 424
           ++GI  +  TY  LI G CK G+
Sbjct: 388 ERGIQPNKYTYTALIDGLCKGGR 410



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 152/319 (47%), Gaps = 12/319 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++++ + L      A     A   L+       +PN  +  + +  LC+ G ++EA
Sbjct: 180 GIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEA 239

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + + GV  ++ ++N+ + G   I       +++H +++ G          +I  
Sbjct: 240 KNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDR 299

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E   LLR+VL   +VP    ++ LI  FC+        +LL  M  R +  D
Sbjct: 300 LCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPAD 359

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK++   +A  +F  +KERG  P+   YT +I GLCK G   +A+K++ 
Sbjct: 360 VVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQ 419

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ KG   N +TYN MI G C+   L+EA  +  +M + G     VT+  +I  L    
Sbjct: 420 HLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKD 479

Query: 389 RTDEAYHLFEEMAQKGIFR 407
           + D+A  L  EM  K + R
Sbjct: 480 QNDKAEKLLHEMIAKDLLR 498


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 172/353 (48%), Gaps = 12/353 (3%)

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNS 140
           N + L+  +F+ +    G  PD V+  VL  SL +A  ++      +   S G SP   +
Sbjct: 136 NKLDLAASYFERM-VQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVT 194

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---- 196
               +   C++G I++A     +LK  G   S   +++ + G  K DR D   +L+    
Sbjct: 195 YATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEARELFEMAA 254

Query: 197 ---HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
               D+I     I   C  GK+ E   +  +++E G  P+  ++N +I   C+       
Sbjct: 255 GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEA 314

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIH 312
            EL+   + R   P       +++GLCKSR+  EA  +   + E G   P  V Y+ VI 
Sbjct: 315 KELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVID 374

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GLCK   L DA  +  +M   G +P+  TY ++I  +C++  L+EA+ L + M ++G   
Sbjct: 375 GLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCAL 434

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             V YN LI G C   + DEA  + EEMA +GI  +V++ +T++ G CKE ++
Sbjct: 435 DVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRV 487



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 189/407 (46%), Gaps = 34/407 (8%)

Query: 18  NFQNPNTQL--RNLSIETKESQQLYTEIAKQVCKITRTK------PRWEQT-LLSDIPSF 68
           NF +   Q+  + + ++ K    LYT +   +CKI +         R  Q+  L D  ++
Sbjct: 101 NFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTY 160

Query: 69  NFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF 128
                  F+    +Q +     + F+ + S  G SP+LV+   + +   +A     A+  
Sbjct: 161 TVLVHSLFKACKWEQGH-----QIFEEMLSK-GHSPELVTYATVVNGYCKAGRIDQALSL 214

Query: 129 ---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM--GVFGSIKTWNSALLGC 183
              L  TG SP+ +     I  LC+    +EA     +L EM  G    +  + S + G 
Sbjct: 215 MRRLKGTGRSPSGSLYSTLIDGLCKHDRHDEA----RELFEMAAGDVQDVIVYTSFISGL 270

Query: 184 IKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            K  + D    ++  +IE+G          +I + C D +VSE  EL+ Q +E   +P  
Sbjct: 271 CKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGV 330

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMV-ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                L+   C+ +       +L  M+   +RAP   TY  VI+GLCK+ +  +AY V  
Sbjct: 331 PVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQ 390

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            ++  G VPD V YT +I   CK+G L +AR+++  M  +G   +   YN +I GYCR  
Sbjct: 391 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAA 450

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            ++EA  + +EM  +G     V+ +T++ GLC   R +EA  L E+M
Sbjct: 451 KVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/418 (24%), Positives = 182/418 (43%), Gaps = 87/418 (20%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           FFQW  +  GF  +  +CN L +  V       A++V  D L  T F P+  +    I+ 
Sbjct: 3   FFQWAKARPGFQHNTYTCNSLLEVFVNDGCHREAYRVFKDEL-VTLFRPDDFTYGTLIRG 61

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----- 202
            C++  I +A     ++K  G+  +I T+ S +    +++ TD   +++H +I+      
Sbjct: 62  FCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPD 121

Query: 203 --------GYL----------------IQAFCNDGKVS---------------EGYELLR 223
                   G+L                +Q+ C   KV+               +G+++  
Sbjct: 122 AFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFE 181

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++L  G  PE   +  +++ +C+     +   L+  +    R+P    Y  +I+GLCK  
Sbjct: 182 EMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHD 241

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +  EA  +F      G V D ++YT+ I GLCK G L +A+ +  +MI  G  P+  +YN
Sbjct: 242 RHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYN 299

Query: 344 SMIHGYCRIDNLEEAKRLHKE-----------------------------------MLDK 368
            +I+  C+ + + EAK L  +                                   ML+ 
Sbjct: 300 VIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLET 359

Query: 369 G-YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G    + VTY+ +I GLC   R D+AY + ++M + G   DV+TY  +I  +CK G++
Sbjct: 360 GDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRL 417



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 74/304 (24%), Positives = 123/304 (40%), Gaps = 39/304 (12%)

Query: 36  SQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQ--QNNVLLSIRFF 93
           S  LY+ +   +CK  R     E   L ++ + +  D + +  F+    +   L   +  
Sbjct: 226 SGSLYSTLIDGLCKHDRHDEARE---LFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAV 282

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCE 150
                  G +PD VS NV+  SL +      A + +D        P      + +  LC+
Sbjct: 283 HVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCK 342

Query: 151 SGLIEEAFCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           S  +EEA     ++ E G    S+ T+++ + G  K DR D                   
Sbjct: 343 SRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLD------------------- 383

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
                  + Y +L+++   G VP+   +  +I  FC+        EL   M  R  A D 
Sbjct: 384 -------DAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDV 436

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR----K 325
             Y  +I G C++ K  EA  +  ++  RG  P+ V  +T++ GLCK   + +AR    K
Sbjct: 437 VAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLSTIVDGLCKESRVEEARLLMEK 496

Query: 326 MWFE 329
           M FE
Sbjct: 497 MNFE 500


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 170/353 (48%), Gaps = 33/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+L + N + +    +  +  A   L        SP+  +  + I  L + G   EA
Sbjct: 278 GISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEA 337

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              ++++   G+  +  T+NS + G  K +R D   ++++         D+I    LI  
Sbjct: 338 EELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDG 397

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   +V +G +LL ++   GLV     +  LI  FC+  N     +LL  M++    P+
Sbjct: 398 YCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPN 457

Query: 269 NFTYEEVINGLC----------------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             T   +++GLC                KS+  L+A   FND++     PD   Y  +I 
Sbjct: 458 VVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVE-----PDVQTYNILIC 512

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL   G   +A +++ EM H+GL+P+  TYNS+I G C+   L+EA ++   M  KG+  
Sbjct: 513 GLINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSP 572

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+ TLI G C  GR  +   +F EM ++GI  + ITY TLI G+C+ G I
Sbjct: 573 DVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNI 625



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 160/338 (47%), Gaps = 11/338 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  GF P LV+ + L   L        A+ F       PN  +    +  LC  G + EA
Sbjct: 138 TKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI-CKPNVIAFTTLMNGLCREGRVVEA 196

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----------DLVWKLYHDLIESGYLIQ 207
                ++ E G+  +  T+ + + G  K+  T          + V ++  +++    +I 
Sbjct: 197 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIID 256

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               DG+ ++   L  ++ E G+ P    +N +I+ FC    +     LL  M  R  +P
Sbjct: 257 GLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSP 316

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  +IN L K  K  EA  ++N++  RG +P+T+ Y ++I G  K   L  A +M+
Sbjct: 317 DVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMF 376

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           + M  KG  P+  T++ +I GYC    +++  +L  EM  +G    T+TY TLI G C  
Sbjct: 377 YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQL 436

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + A  L +EM   G+  +V+T NTL+ G C  GK+
Sbjct: 437 GNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKL 474



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  S  + I+C C    +  A   F K+ ++G   S+ T+++ L G    DR       +
Sbjct: 110 NIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFF 169

Query: 197 H-----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----- 246
           H     ++I    L+   C +G+V E   LL +++EDGL P    +  ++   C+     
Sbjct: 170 HQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 229

Query: 247 ---------------KKNF-------------GRVSE---LLHTMVARNRAPDNFTYEEV 275
                          K N              GR ++   L   M  +  +P+ FTY  +
Sbjct: 230 SALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCM 289

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ING C S +  EA R+  ++ ER   PD V ++ +I+ L K G   +A +++ EM+ +G+
Sbjct: 290 INGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGI 349

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           +PN  TYNSMI G+ + + L+ A+R+   M  KG     +T++ LI G C   R D+   
Sbjct: 350 IPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMK 409

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L  EM+++G+  + ITY TLI G+C+ G +
Sbjct: 410 LLHEMSRRGLVANTITYTTLIHGFCQLGNL 439



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 170/359 (47%), Gaps = 25/359 (6%)

Query: 91  RFFQWLHS-HYGFSPDLVSCNVLFDSLV-EARAFKVA--MDFLDSTGFSPNPNSLELYIQ 146
           R  + LH  H    P++++   L + L  E R  +    +D +   G  PN  +    + 
Sbjct: 161 RVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVD 220

Query: 147 CLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
            +C+ G    A     K++E+  +  ++  +++ + G  K  R      L+ ++ E G  
Sbjct: 221 GMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGIS 280

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   +I  FC+ G+ SE   LLR++ E  + P+   F+ LI+   ++  F    EL
Sbjct: 281 PNLFTYNCMINGFCSSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEEL 340

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M+ R   P+  TY  +I+G  K  +   A R+F  +  +G  PD + ++ +I G C 
Sbjct: 341 YNEMLPRGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCG 400

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + D  K+  EM  +GL+ N  TY ++IHG+C++ NL  A  L +EM+  G     VT
Sbjct: 401 AKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVT 460

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQK-----------GIFRDVITYNTLIQGYCKEGK 424
            NTL+ GLC +G+  +A  +F+ M +             +  DV TYN LI G   EGK
Sbjct: 461 CNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGK 519



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 150/307 (48%), Gaps = 23/307 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA--MDFLDST-GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ N + D   +      A  M +L +T G SP+  +  + I   C +  +++ 
Sbjct: 348 GIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDG 407

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G+  +  T+ + + G  ++   +    L  ++I SG          L+  
Sbjct: 408 MKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDG 467

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            CN+GK+ +  E+ + + +           + + P+   +N LI     +  F    EL 
Sbjct: 468 LCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELY 527

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  VI+GLCK  +  EA ++F+ +  +G+ PD V +TT+I+G CK+
Sbjct: 528 EEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKV 587

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +GD  +++ EM  +G++ N  TY ++IHG+C++ N+  A  + +EM+  G    T+T 
Sbjct: 588 GRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITI 647

Query: 378 NTLIAGL 384
             ++ GL
Sbjct: 648 RNMLTGL 654



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 135/300 (45%), Gaps = 24/300 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +QN +  + R F +L +  G SPD+++ ++L D    A+     M  L      G   N 
Sbjct: 365 KQNRLDAAERMF-YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANT 423

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC--------------- 183
            +    I   C+ G +  A     ++   GV  ++ T N+ L G                
Sbjct: 424 ITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKV 483

Query: 184 -----IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
                + +D +     +  D+     LI    N+GK SE  EL  ++   GLVP+   +N
Sbjct: 484 MQKSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYN 543

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            +I   C++      +++  +M ++  +PD  T+  +ING CK  +  +   VF ++  R
Sbjct: 544 SVIDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRR 603

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G V + + Y T+IHG C++G +  A  ++ EMI  G+ P+  T  +M+ G    + L+ A
Sbjct: 604 GIVANAITYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRA 663



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 33/201 (16%)

Query: 257 LHTMVARNRAPDN-FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH--- 312
           LH  +   R P N +++  +I   C   K   A   F  + + G+ P  V ++T++H   
Sbjct: 98  LHRKMEMRRIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLC 157

Query: 313 ----------------------------GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
                                       GLC+ G + +A  +   M+  GL PN+ TY +
Sbjct: 158 VEDRVSEALHFFHQICKPNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 217

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++ G C++ +   A  L ++M +        V Y+ +I GL   GR  +A +LF EM +K
Sbjct: 218 IVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEK 277

Query: 404 GIFRDVITYNTLIQGYCKEGK 424
           GI  ++ TYN +I G+C  G+
Sbjct: 278 GISPNLFTYNCMINGFCSSGR 298



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   MV     P    + +++  + +  +      +   ++ R
Sbjct: 46  KLQSGFHEIKGLDDAIDLFGYMVRSRPLPCVIDFCKLLGVVVRMERPDVVISLHRKMEMR 105

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               +   +T +I   C    L  A   + ++   G  P+  T+++++HG C  D + EA
Sbjct: 106 RIPCNIYSFTILIKCFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEA 165

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                ++         + + TL+ GLC  GR  EA  L + M + G+  + ITY T++ G
Sbjct: 166 LHFFHQICKP----NVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDG 221

Query: 419 YCKEGKIVN 427
            CK G  V+
Sbjct: 222 MCKMGDTVS 230


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 183/385 (47%), Gaps = 30/385 (7%)

Query: 59  QTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHS--HYGFSPDLVSCNVLFDSL 116
           + + +DI ++N     + RE L ++         FQ L+S    G  P L++ N +   L
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEA--------FQLLNSFSSRGMEPGLLTYNAILYGL 337

Query: 117 VEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
            +   +  A D L      G +PN  +    +  +C    I EA   F ++   GV   +
Sbjct: 338 CKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDL 397

Query: 174 KTWNS-------------ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
            +++S             AL+   +++R+ +V     D +    LI  FC +G +S+  +
Sbjct: 398 VSFSSLIGVLARNGHLYQALMHFREMERSGIV----PDNVIYTILIDGFCRNGALSDALK 453

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +  ++L  G   +   +N  ++  C+KK F     L + MV R   PD +T+  +I G C
Sbjct: 454 MRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC 513

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K     +A  +F  +      PD V Y T+I G CK G +G A+++W +MI K ++P+  
Sbjct: 514 KDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI 573

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           +Y ++++G+C    L EA  L  +ML+KG     VT NTLI G C  G   +AY    +M
Sbjct: 574 SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKM 633

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
              GI  D  +YNTLI GY KE  +
Sbjct: 634 ISNGIIPDSFSYNTLIDGYLKEANL 658



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 175/353 (49%), Gaps = 13/353 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNP 138
           +++N+L +   F  + S  G  PDLVS + L   L      ++  M F  ++ +G  P+ 
Sbjct: 374 RRDNILEAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
               + I   C +G + +A     ++   G F  + T+N+ L G  K         L+++
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           ++E G          LI+ +C DG + +   L   ++   L P+   +N LI  FC+   
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
            GR  EL   M+ ++  PD+ +Y  V+NG C S    EA  + + + E+G  P+ V   T
Sbjct: 553 MGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C+ G +  A +   +MI  G++P+ ++YN++I GY +  NLE+A  L  EM  +G
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                +TYN ++ G C  G+  EA  +  +M + GI  D  TY++LI G+  +
Sbjct: 673 LQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 13/345 (3%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
           FQ L    G S  + +CN L   LV      +A +        G   N  +L + +  LC
Sbjct: 210 FQILRRK-GVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALC 268

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGYL 205
           +    E      S ++  GVF  I T+N+ +    +    +  ++L +      +E G L
Sbjct: 269 KDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLL 328

Query: 206 -----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
                +   C  GK     ++L ++L+ GL P    +N L+   C + N     E+   M
Sbjct: 329 TYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM 388

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             R   PD  ++  +I  L ++    +A   F +++  G VPD V+YT +I G C+ G L
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            DA KM  EM+ +G   +  TYN+ ++G C+     +A  L  EM+++G      T+ TL
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C  G  D+A +LFE M +  +  D +TYNTLI G+CK G++
Sbjct: 509 IRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEM 553



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 165/340 (48%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +P+  + N L       D+++EA+      D +   G  P+  S    I  L  +G +
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEI---FDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 155 EEAFCAFSKLKEMGVFGSIKTW---------NSALLGCIKIDRTDLVWKLYHDLIESGYL 205
            +A   F +++  G+      +         N AL   +K+    L    + D++     
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +   C     ++   L  +++E G+VP+   F  LI  +C+  N  +   L   MV  N 
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+G CK+ +   A  +++D+  +  +PD + Y TV++G C  G L +A  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M+ KG+ PN  T N++I GYCR  ++ +A     +M+  G    + +YNTLI G  
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                ++A+ L  EM ++G+  ++ITYN ++ G+C EGK+
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 141/290 (48%), Gaps = 9/290 (3%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +L ++   ++  + E   AF  L+  GV  SI   N  L G ++    DL W++Y +++ 
Sbjct: 191 DLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVR 250

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C D K       L  +   G+  +   +N LI+ +C +     
Sbjct: 251 GGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEE 310

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL++  +R   P   TY  ++ GLCK  K   A  V  ++ + G  P+   Y T++ 
Sbjct: 311 AFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLV 370

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            +C+   + +A++++ EM  +G+LP+  +++S+I    R  +L +A    +EM   G   
Sbjct: 371 EICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVP 430

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             V Y  LI G C +G   +A  + +EM  +G F DV+TYNT + G CK+
Sbjct: 431 DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVA-MDF--LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ N   + L + + F  A M F  +   G  P+  +    I+  C+ G +++A   F
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCND 212
             +    +     T+N+ + G  K        +L+ D+I           G ++  FC+ 
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G + E   L  Q+LE G+ P     N LI  +C   +  +  E L  M++    PD+F+Y
Sbjct: 586 GLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G  K     +A+ + N++++RG   + + Y  +++G C  G + +A ++  +MI 
Sbjct: 646 NTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            G+ P+  TY+S+I+G+   DN++EA R H EML +G
Sbjct: 706 IGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 29/239 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD V+ N L D   +A     A +  D        P+  S    +   C SGL+ EA   
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             ++ E G+  ++ T N+                          LI+ +C  G + + YE
Sbjct: 595 CDQMLEKGIRPNLVTCNT--------------------------LIKGYCRSGDMPKAYE 628

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
            L +++ +G++P++ ++N LI  + ++ N  +   L++ M  R    +  TY  ++NG C
Sbjct: 629 YLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFC 688

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
              K  EA +V   + E G  PD   Y+++I+G      + +A +   EM+ +GL+P++
Sbjct: 689 AEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%)

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y+ ++    +++K  E    F  L+ +G          ++ GL + GW+  A +++ E++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+  N YT N M++  C+    E       +M  KG     VTYNTLI   C  G  +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           EA+ L    + +G+   ++TYN ++ G CK GK
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGK 342



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 69/294 (23%), Positives = 113/294 (38%), Gaps = 46/294 (15%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEA-FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           F  +  SL   +  L     + EA  C    +++ GV   +K   S +  C       L+
Sbjct: 131 FKHSSXSLSAMVHFLVRGRRLSEAQACILRMVRKSGV-SRVKVVESLISTCFYFGSVGLI 189

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           + L         L++ +    K+ EG E  + +   G+     A NKL+           
Sbjct: 190 YDL---------LVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDL 240

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             E+   +V      + +T   ++N LCK RK        +D++ +G   D V       
Sbjct: 241 AWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIV------- 293

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
                                       TYN++I+ YCR   +EEA +L      +G   
Sbjct: 294 ----------------------------TYNTLINAYCREGLVEEAFQLLNSFSSRGMEP 325

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +TYN ++ GLC  G+ D A  +  EM Q G+  +  TYNTL+   C+   I+
Sbjct: 326 GLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL 379


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 104/338 (30%), Positives = 175/338 (51%), Gaps = 19/338 (5%)

Query: 103 SPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           SP++++ ++L D++ +     +A KV +D + S G  PN  +    I  L +SG +++AF
Sbjct: 156 SPNVITYSILIDAVCKCGGVEKALKVFLD-MKSRGCRPNIFTYTSMIDGLGKSGHVDKAF 214

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F ++   G+  +   +NS + G  +  R D   KL+ +++  G          L+   
Sbjct: 215 FLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGL 274

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G+ SE   + ++  + G   +   +N LI   C+ K      E+   +      PD 
Sbjct: 275 GVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDV 334

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +T+  +++GLCKS +  +A+ +  D+K  G  PD  +Y T+I GL K G + +A ++  E
Sbjct: 335 YTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLE 394

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G  P+  TYN++I   C+   +E+A RL +E+  KG+   TVTYNT++ GLC+ GR
Sbjct: 395 MQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAKGFA-NTVTYNTILNGLCMAGR 453

Query: 390 TDEAYHLFEEMAQKG----IFRDVITYNTLIQGYCKEG 423
            DEAY LF  M Q+     I  D +TY TL+ G  + G
Sbjct: 454 VDEAYKLFNGMKQETVDGVIDPDFVTYTTLLNGARQAG 491



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 160/337 (47%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + NVL ++  +A+           + +   SPN  +  + I  +C+ G +E+A
Sbjct: 119 GLRPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKA 178

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  +K  G   +I T+ S + G  K    D  + L+ ++   G          LI  
Sbjct: 179 LKVFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHG 238

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G+     +L R++L  GL P++  F  L+              +         A D
Sbjct: 239 LGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALD 298

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+ LCKS++  EA+ +F +L+E G VPD   +  ++ GLCK G + DA  +  
Sbjct: 299 VNLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLG 358

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G  P+   YN++I G  +   +EEA +L  EM   GY    VTYNTLI   C  G
Sbjct: 359 DMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGG 418

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  LFEE++ KG F + +TYNT++ G C  G++
Sbjct: 419 RIEDALRLFEEISAKG-FANTVTYNTILNGLCMAGRV 454



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 12/350 (3%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           ++ +FF+W+ +  G  P + +C  L + L  AR F  A + L     S       ++I+ 
Sbjct: 1   MAYKFFKWVRTQRGGVPSVRACTTLVEMLGIARRFNEAEEVLAEVEKSRYILQPRIFIEL 60

Query: 148 L---CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
                 +GL+E++  A  +++      +   +NS +   +K   T     +Y  + +SG 
Sbjct: 61  ARGYASAGLLEKSVEALKRMEGHRCALTASAYNSLIDAFVKAGYTQKALAVYRVMGQSGL 120

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ AF    +V   ++L  ++      P    ++ LI   C+     +  +
Sbjct: 121 RPDTYTFNVLMNAFKKAKRVDSVWKLFEEMQNQNCSPNVITYSILIDAVCKCGGVEKALK 180

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   M +R   P+ FTY  +I+GL KS    +A+ +F ++   G V   V+Y ++IHGL 
Sbjct: 181 VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLG 240

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           + G    A K++ EM+ KGL P+  T+ S+++G        EA+R+ +E  D G      
Sbjct: 241 RSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVN 300

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            YN LI  LC   R DEA+ +F E+ + G+  DV T+N L+ G CK G+I
Sbjct: 301 LYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRI 350


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 171/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N + + + ++    +A+D L   D      +  +    I  LC  G I+ A
Sbjct: 165 GCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCIDAA 224

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
              F +++  G+  S+ T+NS + G  K  + +   +L  D+         I    LI  
Sbjct: 225 ISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDV 284

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ E  EL ++++  G+ P    +N L+  +C +      + +L  MV  N +PD
Sbjct: 285 FVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPD 344

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I G CK ++  E  ++F  + +RG V +TV Y+ ++ G C+ G L  A +++ 
Sbjct: 345 IVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQ 404

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+LP+  TY  ++ G C    LE+A  + +++         V Y  +I G+C  G
Sbjct: 405 EMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGG 464

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A++LF  +  KG+  +V+TY  +I G CK+G +
Sbjct: 465 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 501



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 156/325 (48%), Gaps = 29/325 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P LV  +  F  +   + F + +DF   ++  G + N  +L + I C C       A+  
Sbjct: 63  PSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 122

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ ++G      T+N+                          LI   C + KVSE   
Sbjct: 123 LGKVMKLGYEPDTTTFNT--------------------------LINGLCLESKVSEAVV 156

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ +++E+G  P    +N +++  C+  +     +LL  M  RN   D FTY  +I+ LC
Sbjct: 157 LVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLC 216

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           +      A  +F +++ +G     V Y +++ GLCK G   D  ++  +M  + ++PN  
Sbjct: 217 RDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVI 276

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T+N +I  + +   L+EA  L+KEM+ KG    T+TYN+L+ G C+  R  EA ++ + M
Sbjct: 277 TFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLM 336

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            +     D++T+ +LI+GYCK  ++
Sbjct: 337 VRNNCSPDIVTFTSLIKGYCKVKRV 361



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 186/428 (43%), Gaps = 36/428 (8%)

Query: 23  NTQLRNLSIETKESQQL-----------------YTEIAKQVCKITRTKPRWEQTLLSDI 65
           NT +  L +E+K S+ +                 Y  I   +CK   T    +  LL  +
Sbjct: 139 NTLINGLCLESKVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALD--LLRKM 196

Query: 66  PSFNFNDPLF----FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARA 121
              N    +F      + L +   +  +I  F+ + +  G    LV+ N L   L +A  
Sbjct: 197 DERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETK-GIKSSLVTYNSLVGGLCKAGK 255

Query: 122 FKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           +   +  L    S    PN  +  + I    + G ++EA   + ++   G+  +  T+NS
Sbjct: 256 WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNS 315

Query: 179 ALLGCIKIDRT-------DLVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
            + G    +R        DL+ +     D++    LI+ +C   +V EG +L R++ + G
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRG 375

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           LV     ++ L+  FC+        EL   MV+    PD  TY  +++GLC + K  +A 
Sbjct: 376 LVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKAL 435

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F DL++     D VMYT +I G+CK G + DA  ++  +  KG+ PN  TY  MI G 
Sbjct: 436 EIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGL 495

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+  +L EA  L ++M + G      TYNTLI      G    +  L EEM   G   D 
Sbjct: 496 CKKGSLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADA 555

Query: 410 ITYNTLIQ 417
            +   +I 
Sbjct: 556 SSIKMVID 563



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 107/213 (50%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K  +  +L ++++    +P    F++  S     K F  V +    M     A + +T
Sbjct: 43  DIKEDDAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYT 102

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +IN  C+  K   AY V   + + GY PDT  + T+I+GLC    + +A  +   M+
Sbjct: 103 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMV 162

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  PN  TYNS+++G C+  +   A  L ++M ++       TY+T+I  LC  G  D
Sbjct: 163 ENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERNVKADVFTYSTIIDSLCRDGCID 222

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            A  LF+EM  KGI   ++TYN+L+ G CK GK
Sbjct: 223 AAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/239 (21%), Positives = 94/239 (39%), Gaps = 19/239 (7%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+   L     + +     M     +   G   N  +  + +Q  C+SG +E A  
Sbjct: 342 SPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEE 401

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F ++  +GV   + T+   L G     + +   +++ DL +S           +I+  C
Sbjct: 402 LFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMC 461

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GKV + + L   +   G+ P    +  +IS  C+K +    + LL  M      P++ 
Sbjct: 462 KGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNEPNDC 521

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           TY  +I    +      + ++  ++K  G+  D      VI  L    W       WF+
Sbjct: 522 TYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLSSAVW-------WFK 573



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 43/104 (41%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  ++ EMI    LP+   ++    G              K+M   G      T N +I
Sbjct: 48  DAIDLFQEMIRSRPLPSLVDFSRFFSGVASTKQFNLVLDFCKKMELNGIAHNIYTLNIMI 107

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C   +T  AY +  ++ + G   D  T+NTLI G C E K+
Sbjct: 108 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKV 151


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 169/331 (51%), Gaps = 32/331 (9%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEAR-----AFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           L   +GF P ++S N + D+ + ++     A  V  + L S   SPN  +  + I+  C 
Sbjct: 159 LSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQ-VSPNVFTYNILIRGFCL 217

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC 210
           +G ++ A   F ++++ G   ++ T+N+                          LI  +C
Sbjct: 218 AGNLDVALRFFDRMEKKGCLPNVVTYNT--------------------------LIDGYC 251

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              K+ +G+ELLR +   GL P   ++N +I+  C +     +S +L  M  R  + D  
Sbjct: 252 KLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEV 311

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I G CK     +A  +  ++   G  P  + YT++IH +CK G +  A +   +M
Sbjct: 312 TYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQM 371

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             +GL PNE TY +++ G+ +   + EA R+ KEM+D G+  + VTYN LI G C+ G+ 
Sbjct: 372 RVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKM 431

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +A  + E+M +KG+  DV++Y+T++ G+C+
Sbjct: 432 VDAIAVLEDMKEKGLTPDVVSYSTVLSGFCR 462



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/380 (28%), Positives = 177/380 (46%), Gaps = 14/380 (3%)

Query: 57  WEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL 116
           +++ L S +    F   +  R F     N+ +++RFF  +    G  P++V+ N L D  
Sbjct: 193 FKEMLQSQVSPNVFTYNILIRGFC-LAGNLDVALRFFDRMEKK-GCLPNVVTYNTLIDGY 250

Query: 117 VEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
            + R      + L S    G  PN  S  + I  LC  G ++E     +++ + G     
Sbjct: 251 CKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDE 310

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
            T+N+ + G  K         ++ +++  G          LI + C  G ++   E L Q
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQ 370

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +   GL P    +  L+  F +K        +L  M+    +P   TY  +ING C + K
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGK 430

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            ++A  V  D+KE+G  PD V Y+TV+ G C+   + +A ++  +M+ KG+ P+  TY+S
Sbjct: 431 MVDAIAVLEDMKEKGLTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSS 490

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G+C     +EA  L  EML  G      TY  LI   C+ G   +A  L  EM +KG
Sbjct: 491 LIQGFCEQRRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKG 550

Query: 405 IFRDVITYNTLIQGYCKEGK 424
           +  DV+TY+ LI G  K+ +
Sbjct: 551 VLPDVVTYSVLINGLNKQAR 570



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 171/366 (46%), Gaps = 32/366 (8%)

Query: 92  FFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLEL 143
           F Q L  H     +G SP +++   L  S+ +A     A +FLD     G  PN  +   
Sbjct: 326 FHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTT 385

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW--------K 194
            +    + G + EA+    ++ + G   S+ T+N+ + G CI     D +          
Sbjct: 386 LVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKG 445

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  D++    ++  FC    V E   + R+++  G+ P+   ++ LI  FCE++      
Sbjct: 446 LTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEAC 505

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +L   M+     PD FTY  +IN  C      +A ++ N++ E+G +PD V Y+ +I+GL
Sbjct: 506 DLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGL 565

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYN---------------SMIHGYCRIDNLEEAK 359
            K     +A+++  ++ ++  +P++ TY+               S+I G+C    + EA 
Sbjct: 566 NKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEAD 625

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           ++ + ML+K +      YN +I G C  G   +AY L++EM + G     +T   L++  
Sbjct: 626 QVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTL 685

Query: 420 CKEGKI 425
            KEGK+
Sbjct: 686 HKEGKV 691



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 111/391 (28%), Positives = 172/391 (43%), Gaps = 30/391 (7%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSP--DLVSCNVL----FDSLVEAR 120
           S NF         LK QNN  L ++F  W + H  F+     ++ ++L         +  
Sbjct: 43  SANFTPEAASNLLLKSQNNQELILKFLTWANPHQFFTLRCKCITLHILTRFKLYKTAQTL 102

Query: 121 AFKVAMDFLDSTGFSPNPNSL-ELYIQCLCESGLIEEAFCAFSKL-------------KE 166
           A  VA   LD    S    SL E Y  C   S + +    ++S+L             + 
Sbjct: 103 AEDVAAKTLDDEDASLVFRSLQETYDLCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQA 162

Query: 167 MGVFGSIKTWNSALLGCIKIDRT-DLVWKLYHDLIES---------GYLIQAFCNDGKVS 216
            G    + ++N+ L   I+  R       ++ ++++S           LI+ FC  G + 
Sbjct: 163 HGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLD 222

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
                  ++ + G +P    +N LI  +C+ +      ELL +M  +   P+  +Y  VI
Sbjct: 223 VALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVI 282

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NGLC+  +  E   V  ++ +RGY  D V Y T+I G CK G    A  M  EM+  GL 
Sbjct: 283 NGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLS 342

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY S+IH  C+  N+  A     +M  +G      TY TL+ G    G  +EAY +
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +EM   G    V+TYN LI G+C  GK+V+
Sbjct: 403 LKEMIDNGFSPSVVTYNALINGHCIAGKMVD 433



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 164/329 (49%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L+S NV+ + L  E R  +++  +  ++  G+S +  +    I+  C+ G   +A
Sbjct: 270 GLEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQA 329

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++   G+  S+ T+ S +    K    +   +    +   G          L+  
Sbjct: 330 LVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDG 389

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G ++E Y +L++++++G  P    +N LI+  C          +L  M  +   PD
Sbjct: 390 FSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPD 449

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  V++G C+S    EA RV   +  +G  PDT+ Y+++I G C+     +A  ++ 
Sbjct: 450 VVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFD 509

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  GL P+E+TY ++I+ YC   +L++A +LH EM++KG     VTY+ LI GL    
Sbjct: 510 EMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQA 569

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           RT EA  L  ++  +      +TY+TLI+
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIE 598


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 169/347 (48%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           + LH H      GF  D VS  +L + L +    + A+  L   +     P+       I
Sbjct: 98  KSLHFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTII 157

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC+  L++EA+  +S++   G+F  + T+ + + G     +    + L +++I     
Sbjct: 158 DGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNIN 217

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI   C +GKV E   LL  + + G+ P+   ++ L+  +C      +  ++
Sbjct: 218 PNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQI 277

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              MV     PD ++Y  +INGLCK ++  EA  +  ++  +  +PDTV Y+++I GLCK
Sbjct: 278 FLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCK 337

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +     +  EM H+G   N  TYNS++ G C+  NL++A  L  +M ++G      T
Sbjct: 338 LGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYT 397

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           Y  LI GLC  GR  +   LF+ +  KG   DV TY  +I G CKEG
Sbjct: 398 YTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEG 444



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/231 (34%), Positives = 126/231 (54%), Gaps = 6/231 (2%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           DL+    LI  FC+ G+++  + +L ++L+ G  P     N L+   C K   G V + L
Sbjct: 44  DLVTLSILINCFCHLGQMAFSFSVLGKILKLGYQPNTIILNTLMKGLCLK---GEVKKSL 100

Query: 258 H---TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           H    +VA+    D  +Y  ++NGLCK  +   A ++   +++R   PD VMY+T+I GL
Sbjct: 101 HFHDKVVAQGFQMDQVSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGL 160

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK   + +A  ++ EM  +G+ P+  TY ++I G+C    L EA  L  EM+ K      
Sbjct: 161 CKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNI 220

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TYNTLI  LC  G+  E+ +L   M +KG+  DV+ Y+ L+ GYC  G++
Sbjct: 221 YTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEV 271



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 161/326 (49%), Gaps = 12/326 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V  + + D L + +    A D    +++ G  P+  +    I   C +G + EAF  
Sbjct: 148 PDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLMEAFGL 207

Query: 161 FSKLKEMGVFGSIKTWNSAL-----LGCIKIDRTDLVWK----LYHDLIESGYLIQAFCN 211
            +++    +  +I T+N+ +      G +K  +  L       +  D++    L+  +C 
Sbjct: 208 LNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCL 267

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V +  ++   +++ G+ P+  ++N +I+  C+ K       LL  M+ +N  PD  T
Sbjct: 268 VGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVT 327

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK  +      +  ++  RG   + V Y +++ GLCK   L  A  ++ +M 
Sbjct: 328 YSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMK 387

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ PN+YTY ++I G C+   L++ + L + +L KGY     TY  +I+GLC  G  D
Sbjct: 388 ERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTVMISGLCKEGMFD 447

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQ 417
           EA  +  +M   G   + +T+  +I+
Sbjct: 448 EALAMKSKMEDNGCIPNAVTFEIIIR 473



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 143/318 (44%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++   L      A     A   L+       +PN  +    I  LC+ G ++E+
Sbjct: 180 GIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKES 239

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + + GV   +  ++  + G   +       +++  ++++G          +I  
Sbjct: 240 KNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIING 299

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E   LLR++L   ++P+   ++ LI   C+      + +L   M  R +  +
Sbjct: 300 LCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPAN 359

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLCK++   +A  +F  +KERG  P+   YT +I GLCK G L   + ++ 
Sbjct: 360 LVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQ 419

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ KG   + +TY  MI G C+    +EA  +  +M D G     VT+  +I  L    
Sbjct: 420 HLLVKGYCIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKD 479

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A  L  EM  KG+ 
Sbjct: 480 ENDKAEKLLHEMIAKGLL 497



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 103/196 (52%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           +P    F K++    + K++  V  L   M A+   PD  T   +IN  C   +   ++ 
Sbjct: 7   IPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFS 66

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           V   + + GY P+T++  T++ GLC  G +  +     +++ +G   ++ +Y  +++G C
Sbjct: 67  VLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLC 126

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +I     A +L + + D+      V Y+T+I GLC     DEAY L+ EM  +GIF DVI
Sbjct: 127 KIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVI 186

Query: 411 TYNTLIQGYCKEGKIV 426
           TY TLI G+C  G+++
Sbjct: 187 TYTTLICGFCLAGQLM 202



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 111/227 (48%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +IE G ++ +            L +Q+   G+VP+    + LI+ FC          +L 
Sbjct: 10  IIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSVLG 69

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            ++     P+      ++ GLC   +  ++    + +  +G+  D V Y  +++GLCK+G
Sbjct: 70  KILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCKIG 129

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A K+   +  +   P+   Y+++I G C+   ++EA  L+ EM  +G     +TY 
Sbjct: 130 ETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYT 189

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G CL G+  EA+ L  EM  K I  ++ TYNTLI   CKEGK+
Sbjct: 190 TLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKV 236



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 112/249 (44%), Gaps = 12/249 (4%)

Query: 101 GFSPDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V  ++L D    + E +  K     +  TG +P+  S  + I  LC+   ++EA
Sbjct: 250 GVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEA 309

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH-----DLIESGYLIQA 208
                ++    +     T++S + G  K+ R     DL  +++H     +L+    L+  
Sbjct: 310 MNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDG 369

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +  + +   L  ++ E G+ P    +  LI   C+     +   L   ++ +    D
Sbjct: 370 LCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCID 429

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I+GLCK     EA  + + +++ G +P+ V +  +I  L +      A K+  
Sbjct: 430 VWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLH 489

Query: 329 EMIHKGLLP 337
           EMI KGLLP
Sbjct: 490 EMIAKGLLP 498



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 78/163 (47%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P    + +++  L K +       +   ++ +G VPD V  + +I+  C +G 
Sbjct: 1   MLLLRHIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQ 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  +  +  +++  G  PN    N+++ G C    ++++   H +++ +G+    V+Y  
Sbjct: 61  MAFSFSVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGI 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           L+ GLC  G T  A  L   +  +    DV+ Y+T+I G CK+
Sbjct: 121 LLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKD 163



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/125 (25%), Positives = 65/125 (52%)

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           ++P  + +  ++  L KM        +  +M  KG++P+  T + +I+ +C +  +  + 
Sbjct: 6   HIPPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSF 65

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            +  ++L  GY   T+  NTL+ GLCL G   ++ H  +++  +G   D ++Y  L+ G 
Sbjct: 66  SVLGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGL 125

Query: 420 CKEGK 424
           CK G+
Sbjct: 126 CKIGE 130


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 166/339 (48%), Gaps = 15/339 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +I FF ++     F    V CN +    V      VA+     ++      N  S  + I
Sbjct: 90  AIDFFDYMVRSRPFYT-AVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           +C C+   +  +   F KL ++G    + T+N+ L G    DR      L+  ++E+G+L
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL 208

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
                      E   L  Q++E GL P    FN LI+  C +      + L++ MV +  
Sbjct: 209 -----------EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGL 257

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  ++NG+CK      A  + + ++E    PD V+Y+ +I  LCK G   DA+ 
Sbjct: 258 HIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQY 317

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG+ PN +TYN MI G+C      +A+RL ++M+++      +T+N LI+   
Sbjct: 318 LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASV 377

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G+  EA  L +EM  + IF D +TYN++I G+CK  +
Sbjct: 378 KEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 416



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 173/386 (44%), Gaps = 64/386 (16%)

Query: 101 GFSPDLVSCNVLF------DSLVEARA---FKVAMDFLDST---------GFSPNPNSLE 142
           GF PD+V+ N L       D + EA A   + V   FL++          G +P   +  
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFN 230

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----- 197
             I  LC  G + EA    +K+   G+   + T+ + + G  K+  T     L       
Sbjct: 231 TLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEET 290

Query: 198 ----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
               D++    +I   C DG  S+   L  ++LE G+ P    +N +I  FC   +FGR 
Sbjct: 291 HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFC---SFGRW 347

Query: 254 SE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
           S+   LL  M+ R   PD  T+  +I+   K  K  EA ++ +++  R   PDTV Y ++
Sbjct: 348 SDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 407

Query: 311 IHGLCKMGWLGDARKMW-------------------------------FEMIHKGLLPNE 339
           I+G CK     DA+ M+                                E+  +GL+ N 
Sbjct: 408 IYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANT 467

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN++IHG+C +DNL  A+ L +EM+  G    T+T N L+ G C + + +EA  LFE 
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           +    I  D + YN +I G CK  K+
Sbjct: 528 IQMSKIDLDTVAYNIIIHGMCKGSKV 553



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+   + + + +    K A++ L   + T   P+       I  LC+ G   +A
Sbjct: 256 GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDA 315

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              FS++ E G+  ++ T+N  + G     R     +L  D+IE            LI A
Sbjct: 316 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 375

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK+ E  +L  ++L   + P+   +N +I  FC+   F     +   M +    PD
Sbjct: 376 SVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PD 431

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+  C++++  E  ++  ++  RG V +T  Y T+IHG C++  L  A+ ++ 
Sbjct: 432 VVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQ 491

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G+ P+  T N +++G+C  + LEEA  L + +        TV YN +I G+C   
Sbjct: 492 EMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGS 551

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA+ LF  +   G+  DV TYN +I G+C +  I
Sbjct: 552 KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 588



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 151/330 (45%), Gaps = 13/330 (3%)

Query: 94  QWLHSHY---GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           Q+L S     G +P++ + N + D        + A ++  D ++    +P+  +    I 
Sbjct: 316 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE-INPDVLTFNALIS 374

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIE 201
              + G + EA     ++    +F    T+NS + G  K +R D    ++      D++ 
Sbjct: 375 ASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVT 434

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +I  +C   +V EG +LLR++   GLV   T +N LI  FCE  N     +L   M+
Sbjct: 435 FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMI 494

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +    PD  T   ++ G C++ K  EA  +F  ++      DTV Y  +IHG+CK   + 
Sbjct: 495 SHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 554

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  ++  +   G+ P+  TYN MI G+C    + +A  L  +M D G+     TYNTLI
Sbjct: 555 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 614

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            G    G  D++  L  EM   G   D  T
Sbjct: 615 RGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           VI    +M     A  ++ +M  + +  N Y++N +I  +C    L  +     ++   G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 370 YGETTVTYNTLIAGLCLHGRTDEA---------------YHLFEEMAQKGIFRDVITYNT 414
           +    VT+NTL+ GLCL  R  EA                 LF++M + G+   VIT+NT
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNT 231

Query: 415 LIQGYCKEGKIV 426
           LI G C EG+++
Sbjct: 232 LINGLCLEGRVL 243



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 30/195 (15%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP---NPNSLELYIQCL 148
            FQ + SH G  PD ++CN+L     E    + A++  +    S    +  +  + I  +
Sbjct: 489 LFQEMISH-GVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 547

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C+   ++EA+  F  L   GV   ++T+N                           +I  
Sbjct: 548 CKGSKVDEAWDLFCSLPIHGVEPDVQTYN--------------------------VMISG 581

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +S+   L  ++ ++G  P+N+ +N LI    +     +  EL+  M +   + D
Sbjct: 582 FCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 641

Query: 269 NFTYEEVINGLCKSR 283
            FT + V + +   R
Sbjct: 642 AFTIKMVADLITDGR 656


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/330 (30%), Positives = 163/330 (49%), Gaps = 13/330 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N +  +L +      +   L      G S N  +  ++I+ LCE G +EEA  A
Sbjct: 113 PDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAV-A 171

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
             +  +  +   + T+N+ + G  K  +     +    ++  G          +I  +C 
Sbjct: 172 LVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCK 231

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              + E  ELL+  +  G VP+   +  LI+  C + +  R  EL +   A++  PD   
Sbjct: 232 RDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVV 291

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++ GLC+    L A +V N++ E G  PD   Y  VI+GLCKMG + DA  +  + I
Sbjct: 292 YNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAI 351

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG LP+ +T+N+MI GYC+   L+ A +L + M   G     +TYN+++ GLC  G+  
Sbjct: 352 VKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAK 411

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           E    FEEM  KG   + ITYN LI+ +CK
Sbjct: 412 EVNETFEEMILKGCRPNAITYNILIENFCK 441



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 157/336 (46%), Gaps = 11/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEAF 158
           G S +  +CN+    L E    + A+  ++S     +P+  +    ++ LC+   ++EA 
Sbjct: 145 GMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAA 204

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++   G      T+N+ + G  K D      +L  D I  G+         LI   
Sbjct: 205 QYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGL 264

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C +G V    EL  +     L P+   +N L+   C +       ++++ MV     PD 
Sbjct: 265 CAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDI 324

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +TY  VINGLCK     +A  V ND   +GY+PD   + T+I G CK   L  A ++   
Sbjct: 325 WTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVER 384

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G+ P+  TYNS+++G C+    +E     +EM+ KG     +TYN LI   C   +
Sbjct: 385 MWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQ 444

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA  +   M+Q G+  D I++NTLI G+C+ G +
Sbjct: 445 LEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDL 480



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 155/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N + D   +    + A + L      GF P+  +    I  LC  G +E A
Sbjct: 214 GCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERA 273

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F++ +   +   +  +NS + G  +        ++ ++++E G          +I  
Sbjct: 274 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVING 333

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +S+   ++   +  G +P+   FN +I  +C++       +L+  M     APD
Sbjct: 334 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPD 393

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  V+NGLCK+ K  E    F ++  +G  P+ + Y  +I   CK+  L +A  +  
Sbjct: 394 AITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIV 453

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   GL+P+  ++N++IHG+CR  +L+ A  L +++ +KGY  T  T+N LI       
Sbjct: 454 RMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKL 513

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A  +F EM  KG   D+ TY  L+ G CK   +
Sbjct: 514 NMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANV 550



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 32/332 (9%)

Query: 100 YGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  P   + N + D+LV      +A KV +  L S G +P+  +  + I+  C +G   
Sbjct: 4   FGCPPAAPAYNAIMDALVNTAYHDQAHKVYVRML-SAGVAPDARTHTVRIKSFCITGRPH 62

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
            A      L E G                     D+    Y  ++   Y        G  
Sbjct: 63  VALRLLRSLPERG--------------------CDVKPLAYCTVVRGLY------AHGHG 96

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +   L  ++L   + P+   FN ++   C+K +      LL  ++ R  + + FT    
Sbjct: 97  YDARHLFDEMLRRDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIW 156

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLC+   RLE      +  +    PD V Y T++ GLCK   + +A +    M+++G 
Sbjct: 157 IRGLCEG-GRLEEAVALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGC 215

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           +P+++TYN++I GYC+ D L+EA  L K+ + KG+    VTY +LI GLC  G  + A  
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFKGFVPDRVTYCSLINGLCAEGDVERALE 275

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           LF E   K +  D++ YN+L++G C++G I++
Sbjct: 276 LFNEAQAKDLKPDLVVYNSLVKGLCRQGLILH 307



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 175/411 (42%), Gaps = 39/411 (9%)

Query: 23  NTQLRNLSIETK--ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPS-FNFNDPL--FFR 77
           NT +R L  ++K  E+ Q    +  Q C                IP  F +N  +  + +
Sbjct: 188 NTLMRGLCKDSKVQEAAQYLRRMMNQGC----------------IPDDFTYNTIIDGYCK 231

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN 137
             + Q+   LL    F+      GF PD V+   L + L      + A++  +       
Sbjct: 232 RDMLQEATELLKDAIFK------GFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDL 285

Query: 138 PNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
              L +Y   ++ LC  GLI  A    +++ E G    I T+N  + G  K+        
Sbjct: 286 KPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAV 345

Query: 195 LYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           + +D I  GYL         I  +C   K+    +L+ ++   G+ P+   +N +++  C
Sbjct: 346 VMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLC 405

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +      V+E    M+ +   P+  TY  +I   CK  +  EA  V   + + G VPDT+
Sbjct: 406 KAGKAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTI 465

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            + T+IHG C+ G L  A  ++ ++  KG      T+N +I  Y    N++ A+++  EM
Sbjct: 466 SFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEM 525

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           + KGY     TY  L+ G C     D AY    EM  KG    + T+  ++
Sbjct: 526 ISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVL 576



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 118/281 (41%), Gaps = 12/281 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N++ + L +        V M+     G+ P+  +    I   C+   ++ A
Sbjct: 319 GCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSA 378

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G+     T+NS L G  K  +   V + + ++I  G          LI+ 
Sbjct: 379 LQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITYNILIEN 438

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   ++ E   ++ ++ +DGLVP+  +FN LI  FC   +      L   +  +  +  
Sbjct: 439 FCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSAT 498

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I           A ++F ++  +GY PD   Y  ++ G CK   +  A     
Sbjct: 499 ADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLA 558

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           EM+ KG +P+  T+  +++       + EA  +   M+  G
Sbjct: 559 EMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMG 599



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 63/284 (22%), Positives = 124/284 (43%), Gaps = 20/284 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+ + N + D   +      A+  ++     G +P+  +    +  LC++G  +E 
Sbjct: 354 GYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEV 413

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR----TDLVWK-----LYHDLIESGYLIQA 208
              F ++   G   +  T+N  +    KI++    + ++ +     L  D I    LI  
Sbjct: 414 NETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHG 473

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G +   Y L +++ E G       FN LI  +  K N     ++   M+++   PD
Sbjct: 474 FCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 533

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++G CK+     AY    ++  +G+VP    +  V++ L     + +A  +  
Sbjct: 534 LYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIH 593

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEA--KRLHKEMLDKGY 370
            M+  G++P       ++      D  E A  K L +E++ KG+
Sbjct: 594 IMVRMGVVP------EVVDTILSTDKKEIAAPKILVEELMKKGH 631


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 183/385 (47%), Gaps = 30/385 (7%)

Query: 59  QTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHS--HYGFSPDLVSCNVLFDSL 116
           + + +DI ++N     + RE L ++         FQ L+S    G  P L++ N +   L
Sbjct: 286 KGVFADIVTYNTLINAYCREGLVEEA--------FQLLNSFSSRGMEPGLLTYNAILYGL 337

Query: 117 VEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
            +   +  A D L      G +PN  +    +  +C    I EA   F ++   GV   +
Sbjct: 338 CKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDL 397

Query: 174 KTWNS-------------ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
            +++S             AL+   +++R+ +V     D +    LI  FC +G +S+  +
Sbjct: 398 VSFSSLIGVLARNGHLYQALMHFREMERSGIV----PDNVIYTILIDGFCRNGALSDALK 453

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +  ++L  G   +   +N  ++  C+KK F     L + MV R   PD +T+  +I G C
Sbjct: 454 MRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYC 513

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K     +A  +F  +      PD V Y T+I G CK G +G A+++W +MI K ++P+  
Sbjct: 514 KDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHI 573

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           +Y ++++G+C    L EA  L  +ML+KG     VT NTLI G C  G   +AY    +M
Sbjct: 574 SYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKM 633

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
              GI  D  +YNTLI GY KE  +
Sbjct: 634 ISNGIIPDSFSYNTLIDGYLKEANL 658



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 175/353 (49%), Gaps = 13/353 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNP 138
           +++N+L +   F  + S  G  PDLVS + L   L      ++  M F  ++ +G  P+ 
Sbjct: 374 RRDNILEAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDN 432

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
               + I   C +G + +A     ++   G F  + T+N+ L G  K         L+++
Sbjct: 433 VIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNE 492

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           ++E G          LI+ +C DG + +   L   ++   L P+   +N LI  FC+   
Sbjct: 493 MVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGE 552

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
            GR  EL   M+ ++  PD+ +Y  V+NG C S    EA  + + + E+G  P+ V   T
Sbjct: 553 MGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCNT 612

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C+ G +  A +   +MI  G++P+ ++YN++I GY +  NLE+A  L  EM  +G
Sbjct: 613 LIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRG 672

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                +TYN ++ G C  G+  EA  +  +M + GI  D  TY++LI G+  +
Sbjct: 673 LQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQ 725



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 163/345 (47%), Gaps = 13/345 (3%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
           FQ L    G S  + +CN L   LV      +A +        G   N  +L + +  LC
Sbjct: 210 FQILRRK-GVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALC 268

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGYL 205
           +    E      S ++  GVF  I T+N+ +    +    +  ++L +      +E G L
Sbjct: 269 KDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLL 328

Query: 206 -----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
                +   C  GK     ++L ++L+ GL P    +N L+   C + N     E+   M
Sbjct: 329 TYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEM 388

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             R   PD  ++  +I  L ++    +A   F +++  G VPD V+YT +I G C+ G L
Sbjct: 389 SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTILIDGFCRNGAL 448

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            DA KM  EM+ +G   +  TYN+ ++G C+     +A  L  EM+++G      T+ TL
Sbjct: 449 SDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTL 508

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C  G  D+A +LFE M +  +  D +TYNTLI G+CK G++
Sbjct: 509 IRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTLIDGFCKAGEM 553



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 165/340 (48%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +P+  + N L       D+++EA+      D +   G  P+  S    I  L  +G +
Sbjct: 357 GLTPNAATYNTLLVEICRRDNILEAQEI---FDEMSRRGVLPDLVSFSSLIGVLARNGHL 413

Query: 155 EEAFCAFSKLKEMGVFGSIKTW---------NSALLGCIKIDRTDLVWKLYHDLIESGYL 205
            +A   F +++  G+      +         N AL   +K+    L    + D++     
Sbjct: 414 YQALMHFREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTF 473

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +   C     ++   L  +++E G+VP+   F  LI  +C+  N  +   L   MV  N 
Sbjct: 474 LNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+G CK+ +   A  +++D+  +  +PD + Y TV++G C  G L +A  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M+ KG+ PN  T N++I GYCR  ++ +A     +M+  G    + +YNTLI G  
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYL 653

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                ++A+ L  EM ++G+  ++ITYN ++ G+C EGK+
Sbjct: 654 KEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKM 693



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 141/290 (48%), Gaps = 9/290 (3%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +L ++   ++  + E   AF  L+  GV  SI   N  L G ++    DL W++Y +++ 
Sbjct: 191 DLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVR 250

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C D K       L  +   G+  +   +N LI+ +C +     
Sbjct: 251 GGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEE 310

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL++  +R   P   TY  ++ GLCK  K   A  V  ++ + G  P+   Y T++ 
Sbjct: 311 AFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLV 370

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            +C+   + +A++++ EM  +G+LP+  +++S+I    R  +L +A    +EM   G   
Sbjct: 371 EICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVP 430

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             V Y  LI G C +G   +A  + +EM  +G F DV+TYNT + G CK+
Sbjct: 431 DNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKK 480



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 137/277 (49%), Gaps = 12/277 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVA-MDF--LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ N   + L + + F  A M F  +   G  P+  +    I+  C+ G +++A   F
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCND 212
             +    +     T+N+ + G  K        +L+ D+I           G ++  FC+ 
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSS 585

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G + E   L  Q+LE G+ P     N LI  +C   +  +  E L  M++    PD+F+Y
Sbjct: 586 GLLPEALNLCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G  K     +A+ + N++++RG   + + Y  +++G C  G + +A ++  +MI 
Sbjct: 646 NTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIE 705

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            G+ P+  TY+S+I+G+   DN++EA R H EML +G
Sbjct: 706 IGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRG 742



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/239 (24%), Positives = 108/239 (45%), Gaps = 29/239 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD V+ N L D   +A     A +  D        P+  S    +   C SGL+ EA   
Sbjct: 535 PDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNL 594

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             ++ E G+  ++ T N+                          LI+ +C  G + + YE
Sbjct: 595 CDQMLEKGIRPNLVTCNT--------------------------LIKGYCRSGDMPKAYE 628

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
            L +++ +G++P++ ++N LI  + ++ N  +   L++ M  R    +  TY  ++NG C
Sbjct: 629 YLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKRGLQFNIITYNLILNGFC 688

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
              K  EA +V   + E G  PD   Y+++I+G      + +A +   EM+ +GL+P++
Sbjct: 689 AEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEMLQRGLVPDD 747



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 75/153 (49%)

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y+ ++    +++K  E    F  L+ +G          ++ GL + GW+  A +++ E++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+  N YT N M++  C+    E       +M  KG     VTYNTLI   C  G  +
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           EA+ L    + +G+   ++TYN ++ G CK GK
Sbjct: 310 EAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGK 342



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 106/274 (38%), Gaps = 45/274 (16%)

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
           L E   C    +++ GV   +K   S +  C       L++ L         L++ +   
Sbjct: 151 LSEAQACILRMVRKSGV-SRVKVVESLISTCFYFGSVGLIYDL---------LVRTYVQA 200

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            K+ EG E  + +   G+     A NKL+             E+   +V      + +T 
Sbjct: 201 KKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTL 260

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             ++N LCK RK        +D++ +G   D V                           
Sbjct: 261 NIMVNALCKDRKFENVMFFLSDMEGKGVFADIV--------------------------- 293

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
                   TYN++I+ YCR   +EEA +L      +G     +TYN ++ GLC  G+ D 
Sbjct: 294 --------TYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDR 345

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           A  +  EM Q G+  +  TYNTL+   C+   I+
Sbjct: 346 AKDVLIEMLQLGLTPNAATYNTLLVEICRRDNIL 379


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 162/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L   L +    + +          G  PN  +  ++IQ LC  G I+EA
Sbjct: 211 GICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEA 270

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G+   + ++N+ + G  K  +        H ++ SG          +I  
Sbjct: 271 ARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIING 330

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G +    ++LR  +  G +P+   ++ LI+  C   +  R   + +  + +     
Sbjct: 331 FCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHS 390

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  ++ GL K    L+A ++  D+ E G  PD   Y  V++GLCKMG L DA  +  
Sbjct: 391 IILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILN 450

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           + I KG +P+ +T+N++I GYC+  N+++A  +   ML  G     +TYNTL+ GLC   
Sbjct: 451 DAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKAR 510

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D     F+ M +KG   ++ITYN LI+ +CK+ K+
Sbjct: 511 KLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKV 547



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 154/310 (49%), Gaps = 12/310 (3%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MDF D     P+  S    +  L E G   +A   + ++K++G++  + T    +     
Sbjct: 102 MDFYDC---EPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTIRMKSFCI 158

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R     +L +++   G          +I  F  +    E Y L  ++L+ G+ P+   
Sbjct: 159 TGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILT 218

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FNKLI   C+K N     +L   ++ R   P+ FT+   I GLC+     EA R+   + 
Sbjct: 219 FNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIV 278

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  PD + Y T+I G CK   L +A     +M++ G+ PNE+TYN++I+G+C+   ++
Sbjct: 279 SEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQ 338

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A ++ ++ + KG+     TY++LI GLC  G  + A  +F E  +KG    +I YNTL+
Sbjct: 339 NADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLV 398

Query: 417 QGYCKEGKIV 426
           +G  K+G ++
Sbjct: 399 KGLSKQGLVL 408



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 14/337 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           Y   P + S N + + LVE    ++A KV M   D  G  P+  +  + ++  C +G   
Sbjct: 105 YDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKD-IGIYPDVYTHTIRMKSFCITGRPT 163

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A    + +   G   +  ++ + + G  K +     + L+ ++++ G          LI
Sbjct: 164 AALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFNKLI 223

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G V E  +L  +V++ G+ P    FN  I   C K      + LL ++V+    
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLT 283

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  +Y  +I G CK  K +EA    + +   G  P+   Y T+I+G CK G + +A K+
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKI 343

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             + + KG +P+E+TY+S+I+G C   ++  A  +  E ++KG+  + + YNTL+ GL  
Sbjct: 344 LRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSK 403

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G   +A  L ++M + G   D+ TYN ++ G CK G
Sbjct: 404 QGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMG 440



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 173/380 (45%), Gaps = 18/380 (4%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           +Q +  DI +FN          L ++ NV  S + F  +    G  P+L + N+    L 
Sbjct: 209 KQGICPDILTFNK-----LIHVLCKKGNVQESEKLFSKVMKR-GVCPNLFTFNIFIQGLC 262

Query: 118 EARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
              A   A   L+S    G +P+  S    I   C+   + EA C   K+   GV  +  
Sbjct: 263 RKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEF 322

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
           T+N+ + G  K        K+  D +  G+         LI   CNDG ++    +  + 
Sbjct: 323 TYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEA 382

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           +E G       +N L+    ++    +  +L+  M+    +PD +TY  V+NGLCK    
Sbjct: 383 MEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCL 442

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            +A  + ND   +G +PD   + T+I G CK   +  A ++   M+  G+ P+  TYN++
Sbjct: 443 SDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTL 502

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           ++G C+   L+      K ML+KG     +TYN LI   C   +  EA  LF+EM  +G+
Sbjct: 503 LNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGL 562

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             D++T  TLI G C  G++
Sbjct: 563 TPDIVTLCTLICGLCSNGEL 582



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 152/310 (49%), Gaps = 9/310 (2%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   G  P+  +    I  LC+ G ++E+   FSK+ + GV  ++ T+N  + G  + 
Sbjct: 205 DEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRK 264

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
              D   +L   ++  G          LI  FC   K+ E    L +++  G+ P    +
Sbjct: 265 GAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTY 324

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N +I+ FC+        ++L   + +   PD FTY  +INGLC       A  VF +  E
Sbjct: 325 NTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAME 384

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +G+    ++Y T++ GL K G +  A ++  +M+  G  P+ +TYN +++G C++  L +
Sbjct: 385 KGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSD 444

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  +  + + KG      T+NTLI G C     D+A  + + M   GI  DVITYNTL+ 
Sbjct: 445 ANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLN 504

Query: 418 GYCKEGKIVN 427
           G CK  K+ N
Sbjct: 505 GLCKARKLDN 514



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 188/405 (46%), Gaps = 40/405 (9%)

Query: 33  TKESQQLYTEIAKQ-VCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIR 91
            +ES++L++++ K+ VC      P            F FN    F + L ++  +  + R
Sbjct: 232 VQESEKLFSKVMKRGVC------PNL----------FTFN---IFIQGLCRKGAIDEAAR 272

Query: 92  FFQWLHSHYGFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYI 145
             + + S  G +PD++S N L         LVEA  +   +  + ++G  PN  +    I
Sbjct: 273 LLESIVSE-GLTPDVISYNTLICGFCKHSKLVEAECY---LHKMVNSGVEPNEFTYNTII 328

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C++G+++ A          G      T++S + G       +    ++++ +E G+ 
Sbjct: 329 NGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFK 388

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L++     G V +  +L++ ++E G  P+   +N +++  C+       + +
Sbjct: 389 HSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGI 448

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L+  +A+   PD FT+  +I+G CK R   +A  + + +   G  PD + Y T+++GLCK
Sbjct: 449 LNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCK 508

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              L +    +  M+ KG  PN  TYN +I  +C+   + EA  L KEM  +G     VT
Sbjct: 509 ARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVT 568

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYC 420
             TLI GLC +G  D+AY LF  + ++  F      +N +I  +C
Sbjct: 569 LCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFC 613



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 171/359 (47%), Gaps = 30/359 (8%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST 132
           P      ++ QN+ L +++ F  + +  GF   L +   + + L     F+   D L   
Sbjct: 7   PKHVAAVIRYQNDPLNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEM 66

Query: 133 GFSPNPNSLE-LYIQCLCE---SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
             + +   LE +YI  + +    G ++EA   F ++       S++++N+ +        
Sbjct: 67  RKNVDSKMLEGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIM-------- 118

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
                   + L+E GY  QA          +++  ++ + G+ P+       +  FC   
Sbjct: 119 --------NILVEYGYFSQA----------HKVYMRMKDIGIYPDVYTHTIRMKSFCITG 160

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                  LL+ M  +    +  +Y  VI+G  K   ++EAY +F+++ ++G  PD + + 
Sbjct: 161 RPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQGICPDILTFN 220

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            +IH LCK G + ++ K++ +++ +G+ PN +T+N  I G CR   ++EA RL + ++ +
Sbjct: 221 KLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLLESIVSE 280

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G     ++YNTLI G C H +  EA     +M   G+  +  TYNT+I G+CK G + N
Sbjct: 281 GLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 151/396 (38%), Gaps = 85/396 (21%)

Query: 95  WLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
           +LH   + G  P+  + N + +   +A   + A   L      GF P+  +    I  LC
Sbjct: 308 YLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLC 367

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
             G +  A   F +  E G   SI  +N+ + G  K        +L  D++E G      
Sbjct: 368 NDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIW 427

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               ++   C  G +S+   +L   +  G +P+   FN LI  +C+++N  +  E+L TM
Sbjct: 428 TYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM 487

Query: 261 VARNRAPDNFTYEEVINGLCKSRKR----------------------------------- 285
           ++    PD  TY  ++NGLCK+RK                                    
Sbjct: 488 LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKV 547

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA---------------------- 323
            EA  +F ++K RG  PD V   T+I GLC  G L  A                      
Sbjct: 548 SEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNI 607

Query: 324 --------------RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
                          K++ +M      P+ YTY  MI  YC+  N++ A     E + KG
Sbjct: 608 MINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKG 667

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
              +  T   ++  LC+  R  EA  +   M Q GI
Sbjct: 668 LVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGI 703



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 116/262 (44%), Gaps = 31/262 (11%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +Q N+  +I     + SH G +PD+++ N L + L +AR     +D   +    G +PN 
Sbjct: 473 KQRNMDKAIEILDTMLSH-GITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNI 531

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I+  C+   + EA   F ++K  G                          L  D
Sbjct: 532 ITYNILIESFCKDRKVSEAMELFKEMKTRG--------------------------LTPD 565

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA-FNKLISRFCEKKNFGRVSELL 257
           ++    LI   C++G++ + YEL   + ++     +TA FN +I+ FC K N     +L 
Sbjct: 566 IVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCXKLNVSMAEKLF 625

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           H M   + APDN+TY  +I+  CK+     A+    +   +G VP       V++ LC  
Sbjct: 626 HKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVT 685

Query: 318 GWLGDARKMWFEMIHKGLLPNE 339
             L +A  +   M+  G++P E
Sbjct: 686 HRLSEAVVIINLMVQNGIVPEE 707


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 163/330 (49%), Gaps = 12/330 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L+  + LF  +   + + + +D    ++  G + N  +L + I C C    +  AF A
Sbjct: 70  PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G      T+++ + G     R     +L   ++E G+         L+   C 
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKVS+   L+ +++E G  P    +  ++   C+        ELL  M  R    D   
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK      A+ +FN+++ +G+  D ++YTT+I G C  G   D  K+  +MI
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + P+   ++++I  + +   L EA+ LHKEM+ +G    TVTY +LI G C   + D
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +A H+ + M  KG   ++ T+N LI GYCK
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCK 399



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 158/336 (47%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ + L + L        A++ +D     G  P   +L   +  LC +G + +A
Sbjct: 137 GYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDA 196

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ E G   +  T+   L    K  +T L  +L           D ++   +I  
Sbjct: 197 VLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDG 256

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG +   + L  ++   G   +   +  LI  FC    +   ++LL  M+ R   PD
Sbjct: 257 LCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPD 316

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              +  +I+   K  K  EA  +  ++ +RG  PDTV YT++I G CK   L  A  M  
Sbjct: 317 VVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLD 376

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ KG  PN  T+N +I+GYC+ + +++   L ++M  +G    TVTYNTLI G C  G
Sbjct: 377 LMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 436

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + + A  LF+EM  + +  D+++Y  L+ G C  G+
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGE 472



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 168/339 (49%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
             G  P L++ N L + L        A+  +D    TGF PN  +    ++ +C+SG   
Sbjct: 170 EMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTA 229

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A     K++E  +      ++  + G  K    D  + L++++   G+         LI
Sbjct: 230 LAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLI 289

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           + FC  G+  +G +LLR +++  + P+  AF+ LI  F ++       EL   M+ R  +
Sbjct: 290 RGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGIS 349

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +I+G CK  +  +A  + + +  +G  P+   +  +I+G CK   + D  ++
Sbjct: 350 PDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLEL 409

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + +M  +G++ +  TYN++I G+C +  LE AK L +EM+ +      V+Y  L+ GLC 
Sbjct: 410 FRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCD 469

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +G  ++A  +FE++ +  +  D+  YN +I G C   K+
Sbjct: 470 NGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 508



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 102/359 (28%), Positives = 178/359 (49%), Gaps = 21/359 (5%)

Query: 81  KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPN 137
           K  + VLL  R  +      GF P+ V+   +   + ++    +AM+ L   +      +
Sbjct: 192 KVSDAVLLIDRMVET-----GFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLD 246

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
                + I  LC+ G ++ AF  F++++  G    I  + + + G     R D   KL  
Sbjct: 247 AVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLR 306

Query: 198 DLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           D+I+            LI  F  +GK+ E  EL +++++ G+ P+   +  LI  FC++ 
Sbjct: 307 DMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKEN 366

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
              + + +L  MV++   P+  T+  +ING CK+    +   +F  +  RG V DTV Y 
Sbjct: 367 QLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYN 426

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK-EMLD 367
           T+I G C++G L  A++++ EM+ + + P+  +Y  ++ G C  DN E  K L   E ++
Sbjct: 427 TLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLC--DNGEPEKALEIFEKIE 484

Query: 368 KGYGETTV-TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           K   E  +  YN +I G+C   + D+A+ LF  +  KG+  DV TYN +I G CK+G +
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSL 543



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            +P+  +    I C  + G + EA     ++ + G+     T+ S + G  K ++ D   
Sbjct: 313 ITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKAN 372

Query: 194 KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            +   ++  G          LI  +C    + +G EL R++   G+V +   +N LI  F
Sbjct: 373 HMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGF 432

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           CE        EL   MV+R   PD  +Y+ +++GLC + +  +A  +F  +++     D 
Sbjct: 433 CELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDI 492

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +Y  +IHG+C    + DA  ++  +  KG+ P+  TYN MI G C+  +L EA  L ++
Sbjct: 493 GIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRK 552

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           M + G+     TYN LI      G   ++  L EE+ + G   D  T   ++ 
Sbjct: 553 MEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 64/232 (27%), Positives = 114/232 (49%), Gaps = 6/232 (2%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y + + SG +      D K  +  +L +++      P    F++L S     K +  V +
Sbjct: 40  YRERLRSGIV------DIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLD 93

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M  +  A + +T   +IN  C+ RK   A+     + + GY PDTV ++T+I+GLC
Sbjct: 94  LCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLC 153

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G + +A ++   M+  G  P   T N++++G C    + +A  L   M++ G+    V
Sbjct: 154 LEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEV 213

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY  ++  +C  G+T  A  L  +M ++ I  D + Y+ +I G CK+G + N
Sbjct: 214 TYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDN 265


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 108/404 (26%), Positives = 187/404 (46%), Gaps = 27/404 (6%)

Query: 35  ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFN-FNDPLFFREFLKQQNNVLLSIRFF 93
           E+++L  E+ ++ C +           L +I ++N F D L  +    +   ++ S+R  
Sbjct: 169 EARELIQEMTRKSCDV-----------LPNIITYNSFLDGLCKQSMTAEACELMRSLR-- 215

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVE-ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
                    SPD V+ + L D L +  +  +   D + + G+ PN  +    +  LC++ 
Sbjct: 216 ---DGSLRVSPDTVTFSTLIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGLCKAD 272

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------- 203
            +E A      + + GV   + T++  +    K  R D   +L H +   G         
Sbjct: 273 KMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFN 332

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I   C   +  E +++  QV    LVP+   FN LI+  C+  NF + S L   MVA+
Sbjct: 333 SIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 392

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N  PD  T+  +I+GLCK+ +   A  + + +   G  P+ V Y  ++HGLCK G + + 
Sbjct: 393 NMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEP 452

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +   EM+  G +P   TY S+++  CR    ++A +L  ++   G+   TVTYN L+ G
Sbjct: 453 CEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDG 512

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           L   G+T++A  + EEM  KG   D  T+     G  + G +  
Sbjct: 513 LWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAG 556



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 169/355 (47%), Gaps = 22/355 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++  F+   +  G +P +V+ N + + L ++      M+  +     G  P+  +    I
Sbjct: 64  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKRGHHPDVVTYNTLI 123

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------ 199
             LC++G +EEA      +   G   ++ T++  + G  K+ R D   +L  ++      
Sbjct: 124 DSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 183

Query: 200 -----IESGYLIQAFCNDGKVSEGYELLRQVLEDG---LVPENTAFNKLISRFCEKKNFG 251
                I     +   C     +E  EL+R  L DG   + P+   F+ LI   C+    G
Sbjct: 184 VLPNIITYNSFLDGLCKQSMTAEACELMRS-LRDGSLRVSPDTVTFSTLIDGLCK---CG 239

Query: 252 RVSELLH-TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
           +  E  +  M+A    P+  TY  ++NGLCK+ K   A+ +   + ++G  PD + Y+ +
Sbjct: 240 QTDEACNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVL 299

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +   CK   + +A ++   M  +G  PN  T+NS+I G C+ D   EA ++  ++ ++  
Sbjct: 300 VDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRML 359

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               VT+N LIAG C  G  ++A  LFEEM  K +  DV+T+  LI G CK G++
Sbjct: 360 VPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQV 414



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/226 (36%), Positives = 125/226 (55%), Gaps = 7/226 (3%)

Query: 205 LIQAFCNDGKVSEGYELLR-QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           ++Q+ C  G+ +   E+ R ++  DG+ P    +N +I+  C+    G   EL   +V R
Sbjct: 51  VLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVKR 110

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  TY  +I+ LCK+    EA R+   +  RG VP+ V Y+ +I+GLCK+G + +A
Sbjct: 111 GHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEA 170

Query: 324 RKMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG--YGETTVTYNT 379
           R++  EM  K   +LPN  TYNS + G C+     EA  L + + D        TVT++T
Sbjct: 171 RELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFST 230

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC  G+TDEA +  ++M   G   +V+TYN L+ G CK  K+
Sbjct: 231 LIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKM 274



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 146/296 (49%), Gaps = 16/296 (5%)

Query: 143 LYIQCLCESGLIEEAFCAF-SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           + +Q LC +G    A   F  ++   GV  +I T+N+ + G  K +      +L+ +L++
Sbjct: 50  IVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVK 109

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+         LI + C  G + E   L   +   G VP    ++ LI+  C+      
Sbjct: 110 RGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDE 169

Query: 253 VSELLHTMVAR--NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--YVPDTVMYT 308
             EL+  M  +  +  P+  TY   ++GLCK     EA  +   L++      PDTV ++
Sbjct: 170 ARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFS 229

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I GLCK G   +A     +MI  G +PN  TYN++++G C+ D +E A  + + M+DK
Sbjct: 230 TLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDK 287

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G     +TY+ L+   C   R DEA  L   MA +G   +V+T+N++I G CK  +
Sbjct: 288 GVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDR 343



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 106/194 (54%), Gaps = 7/194 (3%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           +N ++   C      R  E+    +AR+  AP   TY  +INGLCKS +      +F +L
Sbjct: 48  YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEEL 107

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            +RG+ PD V Y T+I  LCK G L +AR++   M  +G +PN  TY+ +I+G C++  +
Sbjct: 108 VKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRI 167

Query: 356 EEAKRLHKEMLDKGYG--ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR---DVI 410
           +EA+ L +EM  K        +TYN+ + GLC    T EA  L   + + G  R   D +
Sbjct: 168 DEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSL-RDGSLRVSPDTV 226

Query: 411 TYNTLIQGYCKEGK 424
           T++TLI G CK G+
Sbjct: 227 TFSTLIDGLCKCGQ 240



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 81/191 (42%), Gaps = 18/191 (9%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+++   L D L +A   + A D LD   + G  PN  +  + +  LC+SG IEE  
Sbjct: 394 MQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEP- 452

Query: 159 CAFSKLKEMGVFGSIK---TWNSALLGCIKIDRTD----LVWKLYH-----DLIESGYLI 206
           C F  L+EM   G +    T+ S +    +  RTD    LV KL       D +    L+
Sbjct: 453 CEF--LEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILV 510

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
                 GK  +   +L +++  G  P++  F           N     ELL  ++A+   
Sbjct: 511 DGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELLRVVLAKGML 570

Query: 267 PDNFTYEEVIN 277
           PD  T   +++
Sbjct: 571 PDATTCSSILD 581


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 170/329 (51%), Gaps = 21/329 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F SLVE R   +  DFL           ++  +    + G I +    F   ++ 
Sbjct: 152 SASSVFISLVEMRGTPMC-DFL-----------VDALMITYMDLGFIPDVIQCFRLSRKH 199

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
                I+   + L   +K++ T  VW  Y +++++G+         L+  FC +G + + 
Sbjct: 200 NFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDA 259

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++  ++ +  L P   +FN LI+ +C+  N      L H M      PD FTY  +IN 
Sbjct: 260 QKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINA 319

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K   A+R+F ++ ERG +P+ V++TT+IHG  + G +   ++ + +M+ KGL P+
Sbjct: 320 LCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPD 379

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YN++++G+C+  +L  A+ +   M+ +G     VTY TLI G C  G  D A  + +
Sbjct: 380 IVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRK 439

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           EM Q GI  D + ++ LI G CKEG++++
Sbjct: 440 EMDQNGIELDRVGFSALICGMCKEGRVID 468



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 14/345 (4%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           L   + F   +  C  L D +++       +   M+ LD+ GF  N     + +   C+ 
Sbjct: 195 LSRKHNFVVPIRGCGNLLDRMMKLNPTGTVWGFYMEILDA-GFPLNVYVFNILMNKFCKE 253

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIES 202
           G I +A   F ++ +  +  ++ ++N+ + G  K+   D+ ++L H         D+   
Sbjct: 254 GNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTY 313

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI A C + K+   + L  ++ E GL+P +  F  LI           + E    M++
Sbjct: 314 SALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLS 373

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   PD   Y  ++NG CK+   + A  + + +  RG  PD V YTT+I G C+ G +  
Sbjct: 374 KGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDT 433

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  EM   G+  +   ++++I G C+   + +A+R  +EML  G     VTY  ++ 
Sbjct: 434 ALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMD 493

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             C  G     + L +EM   G   +V+TYN L+ G CK G++ N
Sbjct: 494 AFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKN 538



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/333 (23%), Positives = 145/333 (43%), Gaps = 15/333 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +VS N L +   +     V       ++ +   P+  +    I  LC+   ++ A   
Sbjct: 273 PTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRL 332

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F ++ E G+  +   + + + G  +  + DL+ + Y  ++  G          L+  FC 
Sbjct: 333 FYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCK 392

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G +     ++  ++  GL P+   +  LI  FC   +     E+   M       D   
Sbjct: 393 NGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVG 452

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I G+CK  + ++A R   ++   G  PD V YT ++   CK G      K+  EM 
Sbjct: 453 FSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQ 512

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G +PN  TYN +++G C++  ++ A  L   ML+ G     +TYNTL+ G   H R  
Sbjct: 513 SDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVGVVPDDITYNTLLEG---HHRHA 569

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            A   +++  + GI  D+ +Y +L+    +  K
Sbjct: 570 NASKHYKQKPEIGIVADLASYKSLVNELYRASK 602


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 174/340 (51%), Gaps = 13/340 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
            +G +P++ + N+L  +L      + A+     +   G +PN  +    +   C +G ++
Sbjct: 3   RHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELD 62

Query: 156 EAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            A    S ++E G    ++ T+NS + G  K  R +   K++ +++  G          L
Sbjct: 63  GAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTL 122

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +  +C  G + E   +  ++ + GLVP+   F  LI   C+  N  +   L+  M  R  
Sbjct: 123 LSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGL 182

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +  T+  +I+G CK     +A     ++++ G  P  V Y  +I+G CK+G +  AR+
Sbjct: 183 RMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARE 242

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM  K + P+  TY+++I GYC++ NL+ A +L+++ML KG     +TY++LI GLC
Sbjct: 243 LIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLC 302

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              R ++A  LFE M Q G+  D  TY TLI G+CKEG +
Sbjct: 303 EEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNV 342



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 163/338 (48%), Gaps = 12/338 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R    +       P+LV+ N + + L +A   + A    D     G +P+  S    +  
Sbjct: 66  RVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSG 125

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C+ G + E+   FS++ + G+   + T+ S +    K    +    L   + E G    
Sbjct: 126 YCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMN 185

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  FC  G + +    + ++ + G+ P    +N LI+ +C+        EL+ 
Sbjct: 186 EVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIR 245

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M A+   PD  TY  +I+G CK      A+++   + ++G +PD + Y+++I GLC+  
Sbjct: 246 EMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEK 305

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L DA +++  M+  G+ P+E+TY ++I G+C+  N+E+A  LH EM+ KG     VTY+
Sbjct: 306 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 365

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            LI GL    RT EA+ L  ++  +    D I Y+ L+
Sbjct: 366 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALM 403



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 175/365 (47%), Gaps = 28/365 (7%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           S+  F  + +  G  PD+V+   L  +  +A   + A+  +      G   N  +    I
Sbjct: 135 SLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALI 193

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
              C+ G +++A  A  ++++ G+  S+  +N+ + G  K+ R DL  +L          
Sbjct: 194 DGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVK 253

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    +I  +C  G +   ++L +++L+ G++P+   ++ LI   CE+K      EL
Sbjct: 254 PDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACEL 313

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M+     PD FTY  +I+G CK     +A  + +++  +G +PD V Y+ +I+GL K
Sbjct: 314 FENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSK 373

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSM---------------IHGYCRIDNLEEAKRL 361
                +A ++ F++ H+  +P+   Y+++               + G+C    ++EA ++
Sbjct: 374 SARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKV 433

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++ MLD+ +      Y+ LI G C  G   +A    ++M + G   +  +  +L++G  +
Sbjct: 434 YQSMLDRNWKLDGSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFE 493

Query: 422 EGKIV 426
           EG +V
Sbjct: 494 EGMVV 498



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/167 (34%), Positives = 93/167 (55%), Gaps = 1/167 (0%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV    AP+ +TY  ++  LC   +  EA  V  D++  G  P+ V Y T++   C+ G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 320 LGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
           L  A ++   M  +G   PN  T+NSM++G C+   +E A+++  EM+ +G     V+YN
Sbjct: 61  LDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYN 120

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TL++G C  G   E+  +F EM Q+G+  DV+T+ +LI   CK G +
Sbjct: 121 TLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNL 167


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/337 (30%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++ + NVL + L +    K A    D +  TG  P   S    I   C+SG +EE 
Sbjct: 227 GYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEG 286

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     ++E  VF  + T+++ + G  K  + +    L+ ++ + G          LI  
Sbjct: 287 FRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLING 346

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V    E+ +Q+   GL  +   +N LI   C+   F    + +  M  R   PD
Sbjct: 347 QCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPD 406

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +++G CK      A  +  ++ + G   D V +T +I GLC+ G + DA +   
Sbjct: 407 KFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAERTLR 466

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  GL P++ TY  ++ G+C+  +++   +L KEM   G+    +TYN L+ GLC  G
Sbjct: 467 EMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQG 526

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +   A  L   M   G+  D ITYN L+QG+CK GK+
Sbjct: 527 QVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKL 563



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 166/332 (50%), Gaps = 14/332 (4%)

Query: 109 CNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           C  L + +++  +  VA++F    LDS G+ PN  +  + +  LC+ G +++A   F ++
Sbjct: 200 CKCLLERMIKMSSPMVALEFYLEILDS-GYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEI 258

Query: 165 KEMGVFGSIKTWNSALLGCIKID------RTDLV---WKLYHDLIESGYLIQAFCNDGKV 215
           ++ G+  +  ++N+ + G  K        R  +V   ++++ D+     LI   C + ++
Sbjct: 259 RKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQL 318

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +   L +++ + GLVP +  F  LI+  C+        E+   M  +    D   Y  +
Sbjct: 319 EDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTL 378

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+GLCK     EA +   ++ +RG +PD   YTT++ G CK G L  A +M  EM+ +G+
Sbjct: 379 IDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGI 438

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +   + ++I G CR   + +A+R  +EML  G      TY  ++ G C  G     + 
Sbjct: 439 QLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFK 498

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           L +EM   G    VITYN L+ G CK+G++ N
Sbjct: 499 LLKEMQSDGHIPGVITYNVLMNGLCKQGQVKN 530



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 155/319 (48%), Gaps = 9/319 (2%)

Query: 118 EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
           +  A  V    L++ G   +    +  +    E G + +A   F   K+  +        
Sbjct: 142 KGSASSVFASILETKGTLSSSFVFDALMSVYTEFGYVSDAIQCFRLTKKHNLKIPFNGCK 201

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLED 228
             L   IK+    +  + Y ++++SGY         L+   C +GKV +   +  ++ + 
Sbjct: 202 CLLERMIKMSSPMVALEFYLEILDSGYPPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKT 261

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           GL P   +FN LI+ +C+  N      L   M      PD FTY  +I+GLCK  +  +A
Sbjct: 262 GLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDA 321

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +F ++ +RG VP+ V +TT+I+G CK G +  A +++ +M  KGL  +   YN++I G
Sbjct: 322 NHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDG 381

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+     EA++   EM  +G      TY TL+ G C  G  + A  + +EM ++GI  D
Sbjct: 382 LCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLD 441

Query: 409 VITYNTLIQGYCKEGKIVN 427
            + +  +I G C++GKIV+
Sbjct: 442 NVAFTAIISGLCRDGKIVD 460


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 171/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +C+ +  S+ E + F   K  + ++++ GF  +  +  + I  LC+   + EA
Sbjct: 220 GVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVSEA 279

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 L   G+   + T+ + +LG  ++ + +   +L  +++E G+         L+  
Sbjct: 280 VEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDG 339

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               GK+ + YEL+ +V   G VP    +N LI+  C+  +  +   L   M   N  P+
Sbjct: 340 LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPN 399

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C+S +   A   F+ + + G       Y ++I+G CK G L  A  ++ 
Sbjct: 400 GITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFI 459

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM +KG+ P   T+ S+I GYC+   +++A +L+ +M+D G      T+  LI+GLC   
Sbjct: 460 EMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTN 519

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  EA  LF+E+ ++ I    +TYN LI+GYC++GKI
Sbjct: 520 KMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKI 556



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 170/338 (50%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G + D+V+   L       + F+  +  +D     GFSP   ++   +  L + G I++A
Sbjct: 290 GLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDA 349

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWK------LYHDLIESGYLIQA 208
           +    K+   G   ++  +N+ +    K   +D+ +L++       L  + I    LI +
Sbjct: 350 YELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDS 409

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++        ++++DG+     A+N LI+  C+  +      L   M  +   P 
Sbjct: 410 FCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPT 469

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+G CK  +  +A++++N + + G  P+   +T +I GLC    + +A +++ 
Sbjct: 470 ATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFD 529

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E++ + + P E TYN +I GYCR   +++A  L ++M  KG    T TY  LI+GLC  G
Sbjct: 530 ELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTG 589

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           R  +A    +++ ++ +  + + Y+ L+ GYC+EG+++
Sbjct: 590 RVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLM 627



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 153/336 (45%), Gaps = 12/336 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +GF P+L   N L +SL +      A      +      PN  +  + I   C SG ++ 
Sbjct: 359 FGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDV 418

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F ++ + G+  ++  +NS + G  K         L+ ++   G          LI 
Sbjct: 419 AISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLIS 478

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C D +V + ++L  +++++G+ P    F  LIS  C        SEL   +V R   P
Sbjct: 479 GYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKP 538

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I G C+  K  +A+ +  D+ ++G VPDT  Y  +I GLC  G +  A+   
Sbjct: 539 TEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFI 598

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            ++  + +  NE  Y++++HGYC+   L EA     EM+ +G     V +  LI G    
Sbjct: 599 DDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQ 658

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                 + L ++M  +G+  D + Y ++I  Y KEG
Sbjct: 659 PDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEG 694



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 156/334 (46%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ ++ ++L DS   +    VA+ + D     G      +    I   C+ G +  A   
Sbjct: 398 PNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESL 457

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F ++   GV  +  T+ S + G  K  +    +KLY+ +I++G          LI   C+
Sbjct: 458 FIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFTALISGLCS 517

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K++E  EL  +++E  + P    +N LI  +C      +  ELL  M  +   PD +T
Sbjct: 518 TNKMAEASELFDELVERKIKPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYT 577

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLC + +  +A    +DL ++    + + Y+ ++HG C+ G L +A     EMI
Sbjct: 578 YRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMI 637

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+  +   +  +I G  +  + +    L K+M D+G     V Y ++I      G   
Sbjct: 638 QRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFK 697

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A+  ++ M  +  F +V+TY  L+ G CK G++
Sbjct: 698 KAFECWDLMVTEECFPNVVTYTALMNGLCKAGEM 731



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 13/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  V+ NVL +          A + L+     G  P+  +    I  LC +G + +A   
Sbjct: 538 PTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDF 597

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN----DGKVS 216
              L +  V  +   +++ L G  +  R         ++I+ G  +   C+    DG + 
Sbjct: 598 IDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGINMDLVCHAVLIDGALK 657

Query: 217 EG-----YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +      ++LL+ + + GL P+N  +  +I  + ++ +F +  E    MV     P+  T
Sbjct: 658 QPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVT 717

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLCK+ +   A  +F  ++     P+++ Y   +  L K G + +A  +   M+
Sbjct: 718 YTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAML 777

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGLL N  T+N +I G+C++    EA ++  EM + G     VTY+TLI   C  G   
Sbjct: 778 -KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVG 836

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  L++ M  +G+  D++ YN LI G C  G++
Sbjct: 837 ASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGEL 870



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/414 (23%), Positives = 162/414 (39%), Gaps = 41/414 (9%)

Query: 47  VCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDL 106
           +C I R K  W+        S         +  +   ++  L++RFF +L  H   +   
Sbjct: 44  LCDIVRGKQSWKVAFNDASISSTLRPHHVEQVLMNTLDDAKLALRFFNFLGLHKNMNHST 103

Query: 107 VSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
            S  ++  +LV +R F  A   L +          E + +C+    L     C FS    
Sbjct: 104 TSYAIMVHALVHSRLFWPANSLLHTLLLR------ESHPKCVFSHFLDSYKRCKFSSTLG 157

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVL 226
             +       +S +   + I +      L  ++     L+       K    +EL  + +
Sbjct: 158 FNLLVQNYVLSSRIFDAVVIVKLMFANNLLPEVRTLSALLNGLLKVRKFITVWELFDESV 217

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             G+ P+    + ++   CE K+F R  E +  M A        TY  +I+GLCK  +  
Sbjct: 218 NAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGFDLSIVTYNVLIHGLCKGDRVS 277

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----------------------------- 317
           EA  V   L  +G   D V Y T++ G C++                             
Sbjct: 278 EAVEVKRSLGGKGLAADVVTYCTLVLGFCRLQQFEAGIQLMDEMVELGFSPTEAAVSGLV 337

Query: 318 ------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
                 G + DA ++  ++   G +PN + YN++I+  C+  +L++A+ L+  M      
Sbjct: 338 DGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLR 397

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +TY+ LI   C  GR D A   F+ M Q GI   V  YN+LI G CK G +
Sbjct: 398 PNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFGDL 451



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 73/178 (41%), Gaps = 13/178 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L + L +A     A      + +    PN  +   ++  L + G ++EA   
Sbjct: 713 PNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGL 772

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
              + + G+  +  T N  + G  K+ R     K+  ++ E+G          LI  +C 
Sbjct: 773 HHAMLK-GLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCR 831

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            G V    +L   +L  GL P+  A+N LI   C      +  EL   M+ R   PDN
Sbjct: 832 SGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPDN 889



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 11/147 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           P+ ++     D+L +    K A+    +   G   N  +  + I+  C+ G   EA    
Sbjct: 748 PNSITYGCFLDNLTKEGNMKEAIGLHHAMLKGLLANTVTHNIIIRGFCKLGRFHEATKVL 807

Query: 162 SKLKEMGVFGSIKTWNSALL---------GCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
           S++ E G+F    T+++ +            +K+  T L   L  DL+    LI   C +
Sbjct: 808 SEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVN 867

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNK 239
           G++ + +EL   +L  G++P+N    K
Sbjct: 868 GELDKAFELRDDMLRRGIIPDNKYLQK 894


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 172/354 (48%), Gaps = 13/354 (3%)

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNS 140
           N+V+ ++  F  L       PD+    +L  SLV+++ +   +     ++  G  PN  +
Sbjct: 49  NDVVDAVSLFNCLLRQNPTPPDMEFGQIL-GSLVKSKHYHTVLSLFQKMEYRGIKPNFVN 107

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKID-------RTDLV 192
             + I C C+ GLI  AF   +K+ +MG      T N+ + G C+K            LV
Sbjct: 108 FNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLV 167

Query: 193 WKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
              +H D +  G LI   C  G+     ELLR+V    +  +   ++ +I   C+ KN  
Sbjct: 168 ALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVN 227

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              +L   MV+R  + +  TY  +I+G C   K  +A  +FN +      PD   +  ++
Sbjct: 228 DAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILV 287

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
              CK G + +A+     M+ +G+ P+  TYNS++ GYC ++ +  AK +   M  +G  
Sbjct: 288 DAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVT 347

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T  +YN +I G C     D+A  LF+EM  K IF +VITYN+LI G CK G+I
Sbjct: 348 ATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRI 401



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           GF  D VS   L + L +    + A++ L           + +Y   I  +C+   + +A
Sbjct: 170 GFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDA 229

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW--------KLYHDLIESGYLIQA 208
           F  +S++    +  +I T+++ + G CI     D +          +  D+     L+ A
Sbjct: 230 FDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDA 289

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G+V E    L  +++ G+ P+   +N L+  +C          +L+TM  R     
Sbjct: 290 FCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTAT 349

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  VING CK +   +A ++F ++  +   P+ + Y ++I GLCK G +  A ++  
Sbjct: 350 VRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELID 409

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  +G  P+  TY+S++   C+   +++A  L  ++ D+G      TY  LI GLC  G
Sbjct: 410 LMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGG 469

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R ++A ++FE++  KG    V TY  +IQG+C  G
Sbjct: 470 RLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHG 504



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 153/340 (45%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++ N              A++F D   + GF  +  S    I  LC+ G    A
Sbjct: 135 GYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAA 194

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
                ++    V   +  +++ +    K    +  + LY +++             LI  
Sbjct: 195 LELLRRVDGKLVQLDVVMYSTIIDSMCKDKNVNDAFDLYSEMVSRRISSNIVTYSALISG 254

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL---LHTMVARNR 265
           FC  GK+ +   L  ++  + + P+   FN L+  FC++   GRV E    L  M+ +  
Sbjct: 255 FCIVGKLKDAIGLFNKMTSENINPDVYTFNILVDAFCKE---GRVKEAKNGLAMMMKQGI 311

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +++G C   +   A  + N +  RG       Y  VI+G CK+  +  A K
Sbjct: 312 KPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMK 371

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM HK + PN  TYNS+I G C+   +  A  L   M D+G     +TY++++  LC
Sbjct: 372 LFKEMHHKQIFPNVITYNSLIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALC 431

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   D+A  L  ++  +GI  ++ TY  LI G CK G++
Sbjct: 432 KNHLVDKAIALLIKLKDQGIRPNMYTYTILIDGLCKGGRL 471



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 75/295 (25%), Positives = 133/295 (45%), Gaps = 9/295 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + S   +P+  +  + +   C+ G ++EA    + + + G+   I T+NS + G   ++ 
Sbjct: 271 MTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNE 330

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            ++   + + +   G          +I  FC    V +  +L +++    + P    +N 
Sbjct: 331 VNMAKSILNTMSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNS 390

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C+        EL+  M  R + PD  TY  +++ LCK+    +A  +   LK++G
Sbjct: 391 LIDGLCKSGRISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQG 450

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P+   YT +I GLCK G L DAR ++ +++ KG      TY  MI G+C     +EA 
Sbjct: 451 IRPNMYTYTILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEAL 510

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            L  +M D       +TY  +I  L      D+A  L  EM  +G+    + Y +
Sbjct: 511 SLLSKMKDNSCIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGS 565



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 101/218 (46%)

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F N+  V +   L   +L     P +  F +++    + K++  V  L   M  R   P
Sbjct: 44  TFHNNNDVVDAVSLFNCLLRQNPTPPDMEFGQILGSLVKSKHYHTVLSLFQKMEYRGIKP 103

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  +IN  C+      A+ V   + + GY PDT+   T I G C  G +  A    
Sbjct: 104 NFVNFNILINCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFH 163

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++  G   ++ +Y ++I+G C++     A  L + +  K      V Y+T+I  +C  
Sbjct: 164 DKLVALGFHLDQVSYGTLINGLCKVGETRAALELLRRVDGKLVQLDVVMYSTIIDSMCKD 223

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              ++A+ L+ EM  + I  +++TY+ LI G+C  GK+
Sbjct: 224 KNVNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKL 261


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/350 (31%), Positives = 170/350 (48%), Gaps = 16/350 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEAR-----AFKVAMDFLDSTGFSPNPNSLELYI 145
           +FF  L  +YG +    SCN+    L   R       KV  +F    G   N  S  + +
Sbjct: 60  KFFDKL-LNYGVALSAGSCNLYLTCLSSKRDMLGMVLKVFSEF-PQLGVCWNTESYNILM 117

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             L   G I EA     +++  G    + ++ + + G   +     V +L  ++   G  
Sbjct: 118 NSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLK 177

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   +I   C  GKV EG ++LR++++ G+ P++  +  LI  FC+  N     +L
Sbjct: 178 PNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKL 237

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M AR   PD+  +  +I GL  S K +EA ++FN++ ++G+ PD V YT +I G CK
Sbjct: 238 FSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALIDGYCK 297

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A  +  +M+  GL PN  TY ++  G C+   L+ A  L  EM  KG      T
Sbjct: 298 LGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNIST 357

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YNT++ GLC  G   +A  L EEM + G+  D ITY TL+  Y K G++V
Sbjct: 358 YNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMV 407



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 166/339 (48%), Gaps = 47/339 (13%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI--KIDRTDL 191
           +  +P+  +++ Q L E+GL+ EA   F KL   GV  S  + N   L C+  K D   +
Sbjct: 35  WGSDPHVFDVFFQVLVEAGLLNEARKFFDKLLNYGVALSAGSCN-LYLTCLSSKRDMLGM 93

Query: 192 VWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           V K++ +  + G          L+ +    GK+ E + LL ++   G +P+  ++  +I 
Sbjct: 94  VLKVFSEFPQLGVCWNTESYNILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIID 153

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            +C      +V +L+  M  +   P+ +TY  +I  LCKS K +E  +V  ++ +RG  P
Sbjct: 154 GYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFP 213

Query: 303 DTVMYTTVIHGLCKM-----------------------------------GWLGDARKMW 327
           D V+YTT+I G CK+                                   G + +A K++
Sbjct: 214 DHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLF 273

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EMI KG  P+E TY ++I GYC++  +++A  LH +M+  G     VTY  L  GLC  
Sbjct: 274 NEMIKKGFEPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKS 333

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G  D A  L  EM +KG+  ++ TYNT++ G CK G I+
Sbjct: 334 GELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNIL 372



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 178/397 (44%), Gaps = 54/397 (13%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           + LF    +++ +++L+ + F        G  PD+VS   + D        +  +  +  
Sbjct: 118 NSLFRLGKIREAHHLLMRMEF-------KGCIPDVVSYTTIIDGYCHVGELQKVVQLVKE 170

Query: 132 T---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
               G  PN  +    I  LC+SG + E      ++ + GVF     + + + G  K+  
Sbjct: 171 MQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGN 230

Query: 189 TDLVWKLY-----------------------------------HDLIESGY--------- 204
           T   +KL+                                   +++I+ G+         
Sbjct: 231 TQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTA 290

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +C  G++ + + L  Q+++ GL P    +  L    C+       +ELLH M  + 
Sbjct: 291 LIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKG 350

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              +  TY  ++NGLCK+   L+A ++  ++KE G  PDT+ YTT++    K G +  AR
Sbjct: 351 LQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKAR 410

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+ +GL P   T+N +++G C    LE+ +RL K ML+KG      TYN+++   
Sbjct: 411 ELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQY 470

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           C+      +  ++  M  +G+  D  TYN LI+G+CK
Sbjct: 471 CIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHCK 507



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 184/396 (46%), Gaps = 40/396 (10%)

Query: 39  LYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHS 98
           +YT +    CK+  T+  ++  L S++ +         RE +        SI F   +  
Sbjct: 217 IYTTLIDGFCKLGNTQAAYK--LFSEMEA---------REIVPD------SIAFSALICG 259

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             G S  +V  + LF+ +++              GF P+  +    I   C+ G +++AF
Sbjct: 260 LSG-SGKVVEADKLFNEMIKK-------------GFEPDEVTYTALIDGYCKLGEMKKAF 305

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
              +++ ++G+  ++ T+ +   G  K    D   +L H++   G          ++   
Sbjct: 306 FLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGL 365

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G + +  +L+ ++ E GL P+   +  L+  + +     +  ELL  M+ R   P  
Sbjct: 366 CKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTV 425

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            T+  ++NGLC S K  +  R+   + E+G +P+   Y +++   C    +  + +++  
Sbjct: 426 VTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRG 485

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +G++P+  TYN +I G+C+  N++EA  LHKEM++K +  T  +YN LI G     +
Sbjct: 486 MCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKK 545

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  LFEEM ++G+      YN  +    +EG +
Sbjct: 546 LLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNM 581



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 69/280 (24%), Positives = 130/280 (46%), Gaps = 12/280 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L D L ++     A + L      G   N ++    +  LC++G I +A
Sbjct: 315 GLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQA 374

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++KE G+     T+ + +    K        +L  ++++ G          L+  
Sbjct: 375 VKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTFNVLMNG 434

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK+ +G  LL+ +LE G++P    +N ++ ++C + N    +E+   M A+   PD
Sbjct: 435 LCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRNNMRISTEIYRGMCAQGVVPD 494

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I G CK+R   EA+ +  ++ E+ +      Y  +I G  K   L +AR+++ 
Sbjct: 495 SNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGFFKRKKLLEARQLFE 554

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           EM  +GL+ +   YN  +       N+E    L  E ++K
Sbjct: 555 EMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDEAIEK 594


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  P++ + N+L +S    +    A   L      G  PN  +    I+ LC  G I E
Sbjct: 88  FGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGE 147

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
               F K+   G   ++ T+ + + G  K+  T    +L           D++    +I 
Sbjct: 148 VLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID 207

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C D +V++ + L  +++  G+ P    +N LI   C    +  V+ LL+ MV     P
Sbjct: 208 SLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMP 267

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  V++ LCK  K +EA+ V + + +RG  P+ V Y  ++ G C    + +A K++
Sbjct: 268 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 327

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ KG  P+  +Y+++I+GYC+I  +E+A  L +EM  K     TVTY+TL+ GLC  
Sbjct: 328 DTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV 387

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR  +A  LF EM  +G   D ++Y  L+   CK  ++
Sbjct: 388 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRL 425



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 168/346 (48%), Gaps = 14/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P +     L  S+ + + +   +     +DS G  PN  +L + I   
Sbjct: 47  FNRMLHMHP--PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSF 104

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C    +  AF   +K+ ++G   +I T+N+ + G     +   V  L+  +I  G+    
Sbjct: 105 CHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNV 164

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C  G  S    LLR + +    P+   +  +I   C+ +   +   L   
Sbjct: 165 VTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSE 224

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+ +  +P  FTY  +I+ LC   +      + N++     +P+ V+++TV+  LCK G 
Sbjct: 225 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 284

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A  +   MI +G+ PN  TYN+++ G+C    ++EA ++   M+ KG+    V+Y+T
Sbjct: 285 VMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYST 344

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C   R ++A +LFEEM +K +  + +TY+TL+ G C  G++
Sbjct: 345 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL 390



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 167/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L + L +  +   A+  L S       P+       I  LC+   + +A
Sbjct: 159 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 218

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+  SI T+NS +     +     V  L ++++ S  +         + A
Sbjct: 219 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 278

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV E ++++  +++ G+ P    +N L+   C +       ++  TMV +  APD
Sbjct: 279 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPD 338

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK ++  +A  +F ++  +  +P+TV Y+T++HGLC +G L DA  ++ 
Sbjct: 339 VVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFH 398

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G +P+  +Y  ++   C+   L+EA  L K +           Y  +I G+C  G
Sbjct: 399 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 458

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  ++ KG+  +V TY  +I G C++G
Sbjct: 459 ELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQG 493



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 151/337 (44%), Gaps = 12/337 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G SP + + N L  +L     +K     L+   ++   PN       +  LC+ G + 
Sbjct: 227 HQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVM 286

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLI 206
           EA      + + GV  ++ T+N+ + G          +K+  T +      D++    LI
Sbjct: 287 EAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLI 346

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C   ++ +   L  ++    L+P    ++ L+   C          L H MV R + 
Sbjct: 347 NGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQI 406

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  +Y  +++ LCK+R+  EA  +   ++     PD  +YT VI G+C+ G L  AR +
Sbjct: 407 PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDL 466

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  +  KGL PN +TY  MI+G C+   L EA +L  EM  KGY     TYN +  G   
Sbjct: 467 FSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLR 526

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  T     L +EM  +G   DV T   L++    +G
Sbjct: 527 NNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG 563



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 139/311 (44%), Gaps = 12/311 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V  + + D+L +      A D +D     G  PN  +    +   C    ++EA   
Sbjct: 267 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 326

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
           F  +   G    + ++++ + G  KI R +    L+ ++         +    L+   C+
Sbjct: 327 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH 386

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++ +   L  +++  G +P+  ++  L+   C+ +       LL  +   N  PD   
Sbjct: 387 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 446

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+G+C++ +   A  +F++L  +G  P+   YT +I+GLC+ G L +A K++ EM 
Sbjct: 447 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 506

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TYN +  G+ R +      +L +EML +G+     T   L+  L   G   
Sbjct: 507 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQ 566

Query: 392 EAYHLFEEMAQ 402
               +  E  Q
Sbjct: 567 SVKQILSEFLQ 577



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 132/342 (38%), Gaps = 96/342 (28%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           +++A  +F+++  M    SI  +   L+   K+     V  L H                
Sbjct: 40  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSH---------------- 83

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
                     Q+   G+ P     N LI+ FC  +  G    +L  ++     P+  T+ 
Sbjct: 84  ----------QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFN 133

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK-------- 325
            +I GLC   K  E   +F+ +   G+ P+ V Y T+I+GLCK+G    A +        
Sbjct: 134 TLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG 193

Query: 326 ---------------------------MWFEMIHKGLLPNEYTYNSMIHGYCRI------ 352
                                      ++ EMIH+G+ P+ +TYNS+IH  C +      
Sbjct: 194 NCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHV 253

Query: 353 -----------------------------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
                                          + EA  +   M+ +G     VTYN L+ G
Sbjct: 254 TALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 313

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            CL    DEA  +F+ M  KG   DV++Y+TLI GYCK  +I
Sbjct: 314 HCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRI 355



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 3/180 (1%)

Query: 249 NFGRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           NF  + + L +   M+  +  P    + +++  + K +       + + +   G  P+  
Sbjct: 36  NFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIY 95

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
               +I+  C +  LG A  +  +++  G  PN  T+N++I G C    + E   L  +M
Sbjct: 96  TLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKM 155

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +G+    VTY TLI GLC  G T  A  L   M Q     DV+ Y ++I   CK+ ++
Sbjct: 156 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 215


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/373 (27%), Positives = 177/373 (47%), Gaps = 48/373 (12%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS----TGFSPNPNSLELYIQCLCESGLI 154
           H    P ++  N L  ++V+ R +  A+  L       G SP+  +L + I C  +   +
Sbjct: 114 HRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHMLINCFFQLQRV 173

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           +  F   +K+ ++G+  +I T+N+ + G  K+ +     +L+ D++  GY         +
Sbjct: 174 DLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGYQPDVHTYTTI 233

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C  G+      L R++ E G  P+   ++ +I   C+ +      ++   M A+  
Sbjct: 234 INGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGI 293

Query: 266 APDNFTYEEVINGLCK-SRKR----------------------------------LEAYR 290
           +P+ FTY  +I GLC  SR R                                   EA  
Sbjct: 294 SPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARG 353

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           V   + E G  P+ V Y+++++G      + +ARK++  MI KG  P+ ++YN +I+GYC
Sbjct: 354 VLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYC 413

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   + EAK+L  EM+ +G     V+YNTLI GLC  GR  EA+ LF+ M   G   D+ 
Sbjct: 414 KAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLC 473

Query: 411 TYNTLIQGYCKEG 423
           TY+ L+ G+CK+G
Sbjct: 474 TYSILLDGFCKQG 486



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 162/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+ +   + + L +      A      +   G  P+  +    I  LC+   + EA
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 281

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---------TDLVWKLYHDLIESGYLIQA 208
              FS +K  G+  +I T+NS + G     R           +   +  +++    LI  
Sbjct: 282 LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 341

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G V E   +L+ + E G+ P    ++ L++ +  +       +L   M+ +   PD
Sbjct: 342 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPD 401

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F+Y  +ING CK+++  EA ++FN++  +G  PD V Y T+I GLC++G L +A  ++ 
Sbjct: 402 VFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFK 461

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  G LP+  TY+ ++ G+C+   L +A RL + M         V YN LI  +C   
Sbjct: 462 NMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSR 521

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              EA  LF E+  +G+  +V  Y T+I G CKEG
Sbjct: 522 NLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEG 556



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 161/331 (48%), Gaps = 12/331 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + + DSL + R    A+D   ++ + G SPN  +    IQ LC      EA
Sbjct: 257 GCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREA 316

Query: 158 FCAFSKLKEMGVFGSIKTWN---------SALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
               +++  + +  +I T++           +     + +T     +  +++    L+  
Sbjct: 317 SAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNG 376

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +    +V E  +L   ++  G  P+  ++N LI+ +C+ K  G   +L + M+ +   PD
Sbjct: 377 YSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPD 436

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+GLC+  +  EA+ +F ++   G +PD   Y+ ++ G CK G+L  A +++ 
Sbjct: 437 IVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFR 496

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M    L PN   YN +I   C+  NL+EA++L  E+  +G       Y T+I GLC  G
Sbjct: 497 AMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEG 556

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             DEA   F  M + G   +  +YN +I+G+
Sbjct: 557 LLDEALEAFRNMEEDGCPPNEFSYNVIIRGF 587



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/222 (35%), Positives = 118/222 (53%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  F    +V  G+ +L ++++ GL      FN LI+  C+   FG+  EL   MVAR 
Sbjct: 163 LINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARG 222

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +INGLCK  + + A  +F  + E G  PD V Y+T+I  LCK   + +A 
Sbjct: 223 YQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNEAL 282

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M  KG+ PN +TYNS+I G C      EA  +  EM+        VT++ LI   
Sbjct: 283 DIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIF 342

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G   EA  + + M + G+  +V+TY++L+ GY  + ++V
Sbjct: 343 CKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVV 384



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 1/141 (0%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR-KMWFEMIHKGLLPNEYTYNSM 345
           +A   FN +  R   P  + +  ++  + KM    DA   +  +M   GL P+ YT + +
Sbjct: 104 DALAYFNHMLHRKPRPCIIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLHML 163

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I+ + ++  ++    +  +++  G   T VT+NTLI GLC  G+  +A  LF++M  +G 
Sbjct: 164 INCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVARGY 223

Query: 406 FRDVITYNTLIQGYCKEGKIV 426
             DV TY T+I G CK G+ V
Sbjct: 224 QPDVHTYTTIINGLCKIGETV 244


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 158/334 (47%), Gaps = 13/334 (3%)

Query: 104 PDLVSC--NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           PD   C  N+L  +L+ A   K A    D     P+  +    +   C  G +E A    
Sbjct: 251 PDKNVCSHNILLKALLSAGRLKDACQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLL 310

Query: 162 SKLKEMGVFGSIKTWNSAL-LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            ++   G+  +   + S + L C K   +D   ++  D+   G          +I  FC+
Sbjct: 311 DEMAAKGLESNATVYTSVIALLCNKGQVSD-ALRVLEDMTMHGVALDAVVFTTVISGFCS 369

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G ++    L  ++ + GL  +      LI+  C          +L  MV +    D  T
Sbjct: 370 KGDLAAARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVT 429

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK    +EA+RV N++  R   P+ V YT +  GLCK G +  A ++  EM 
Sbjct: 430 YTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMC 489

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           +KGL  N YTYNS+I+G C+  NLE+A R+  EM   G+     TY TLI  LC  G  D
Sbjct: 490 NKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFD 549

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A+++ +EM  KGI   + TYN L+ G+C  G++
Sbjct: 550 RAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRV 583



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 133/294 (45%), Gaps = 44/294 (14%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
            FS +P S +L + CL  + L+        +L++ G+  S ++ N A+L  + +D     
Sbjct: 195 AFSSDPASFDLLLLCLPSAELLR-------RLRQYGLSPSPESCN-AVLSRLPLD----- 241

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                                   E   L R++ +  +   N     L+S        GR
Sbjct: 242 ------------------------EAIALFRELPDKNVCSHNILLKALLSA-------GR 270

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           + +        +  PD  TY  +++G C   +   A ++ +++  +G   +  +YT+VI 
Sbjct: 271 LKDACQHFDEMSSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIA 330

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            LC  G + DA ++  +M   G+  +   + ++I G+C   +L  A+RL +EM  +G   
Sbjct: 331 LLCNKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAA 390

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VT+  LI GLC  G   EA  + +EM  KG+  DV+TY  LI GYCK G +V
Sbjct: 391 DRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMV 444



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 22/350 (6%)

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLEL 143
           + V L    F  + S +    DL +   LF+   E +   +A D +  T           
Sbjct: 351 HGVALDAVVFTTVISGFCSKGDLAAARRLFE---EMQKRGLAADRVTHTAL--------- 398

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES- 202
            I  LC +G ++EA     ++ + G+   + T+   + G  K       ++++++++   
Sbjct: 399 -INGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRR 457

Query: 203 --------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     L    C  G V    ELL ++   GL      +N LI+  C+  N  +  
Sbjct: 458 VAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAM 517

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            ++  M A     D +TY  +I+ LCKS +   A+ +  ++ ++G  P    Y  +++G 
Sbjct: 518 RIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGF 577

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C  G +   +K+   M+ K + PN  TYNS++  YC   N++    ++K M  +      
Sbjct: 578 CMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNE 637

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            TYN LI G C      EA +  +EM +KG+     +Y+ LI+   K+ K
Sbjct: 638 NTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKK 687



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 144/335 (42%), Gaps = 13/335 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQC 147
           R F+ +    G + D V+   L + L  A   K A   L      G   +  +  + I  
Sbjct: 378 RLFEEMQKR-GLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDG 436

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C+ G + EAF   +++    V  ++ T+ +   G  K        +L H++   G    
Sbjct: 437 YCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELN 496

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C  G + +   ++ ++   G   +   +  LI   C+   F R   +L 
Sbjct: 497 VYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQ 556

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ +   P   TY  ++NG C S +     ++   + E+   P+ V Y +++   C   
Sbjct: 557 EMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDK 616

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +    +++  M  + + PNE TYN +I G+C+  N++EA   H+EM++KG   T  +Y+
Sbjct: 617 NMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYS 676

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            LI  L    +  EA   F++M  +G+  +   Y+
Sbjct: 677 ALIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYS 711



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 127/288 (44%), Gaps = 12/288 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+   L D L +    + A + L    + G   N  +    I  LC+ G +E+A  
Sbjct: 459 APNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMR 518

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
             ++++  G    + T+ + +    K    D    +  ++++ G          L+  FC
Sbjct: 519 IMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFC 578

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+V  G +LL  +LE  + P    +N L+ ++C  KN    +E+   M ++  AP+  
Sbjct: 579 MSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNEN 638

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I G CK+R   EA     ++ E+G       Y+ +I  L K     +AR  + +M
Sbjct: 639 TYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSALIRLLNKKKKFSEARVFFDKM 698

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            ++GL      Y+  +      DNLE    L  E+++  + ++    N
Sbjct: 699 RNEGLTAEPDVYSFYMDISFNEDNLESTITLCDELVEASHVKSKAGTN 746



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 11/94 (11%)

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           GL P+  + N+++    R+  L+EA  L +E+ DK       ++N L+  L   GR  +A
Sbjct: 223 GLSPSPESCNAVL---SRLP-LDEAIALFRELPDKN----VCSHNILLKALLSAGRLKDA 274

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              F+EM+      DV+TY T++ GYC  G++ N
Sbjct: 275 CQHFDEMSSPP---DVVTYGTMVHGYCVRGELEN 305


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/407 (28%), Positives = 181/407 (44%), Gaps = 57/407 (14%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVA 125
           D + F   L    NVL+     + L S Y      G  PD+V+ N L  +L  A   + A
Sbjct: 161 DTVVFNHLL----NVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTA 216

Query: 126 MDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           +  L+   S G +P+  +    +Q   E G IE A    +K+ E G   +  T N  + G
Sbjct: 217 VLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLING 276

Query: 183 CIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVS-----------EGYE-- 220
             K+ R +         I  G+          +   C +G VS           EG++  
Sbjct: 277 YCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPD 336

Query: 221 ----------------------LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                                 ++ Q+++ G +P+ T FN LI     +       +L  
Sbjct: 337 VFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLAR 396

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +  +PD +T+  +IN LCK        R+F ++K  G  PD V Y  +I  LC MG
Sbjct: 397 ELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMG 456

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            LG+A  +  EM   G   +  TYN++I   C+   +EEA+ +  +M  +G   + VT+N
Sbjct: 457 KLGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFN 516

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI GLC   R D+A  L E+M ++G+  + ITYN+++  YCK+G I
Sbjct: 517 TLIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNI 563



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 153/330 (46%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD V+ N     L +    + A KV MD +   G  P+  +    I CL ++G ++E
Sbjct: 297 GFEPDQVTYNTFVHGLCQNGHVSHALKV-MDLMLQEGHDPDVFTYNTVINCLSKNGELDE 355

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ + G      T+N+ ++     +R +    L  +L   G          LI 
Sbjct: 356 AKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILIN 415

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G    G  L  ++   G  P+   +N LI   C     G   +LL+ M +     
Sbjct: 416 ALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPR 475

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+ LCK  +  EA  VF+ +  +G     V + T+I GLCK   + DA ++ 
Sbjct: 476 STVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELI 535

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ +GL PN  TYNS++  YC+  N+++A  + + M   G+    VTY TLI GLC  
Sbjct: 536 EQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKA 595

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           GRT  A  L   M  KGI      YN +IQ
Sbjct: 596 GRTQVALKLLRGMRIKGIRPTPKAYNPVIQ 625



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 148/340 (43%), Gaps = 35/340 (10%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKV---AMDFLDSTGFSPNPNSLELYIQCLCE 150
           Q  +  +G   D V  N L + LVE    K+     + +   G  P+  +L   I+ LC 
Sbjct: 150 QLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCR 209

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC 210
           +  +  A     ++   GV     T+ +                          L+Q F 
Sbjct: 210 AHQVRTAVLMLEEMSSHGVAPDETTFTT--------------------------LMQGFI 243

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVARNRAP 267
            +G +     +  +++E G  P     N LI+ +C+    GRV + L      +A    P
Sbjct: 244 EEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCK---MGRVEDALGYIQQEIADGFEP 300

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY   ++GLC++     A +V + + + G+ PD   Y TVI+ L K G L +A+ + 
Sbjct: 301 DQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIV 360

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ +G LP+  T+N++I      + LEEA  L +E+  KG      T+N LI  LC  
Sbjct: 361 NQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKV 420

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G       LFEEM   G   D +TYN LI   C  GK+ N
Sbjct: 421 GDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGN 460



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 153/338 (45%), Gaps = 33/338 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY--- 144
           L IR F+ + S  G +PD V+ N+L D L        A+D L+    +  P S   Y   
Sbjct: 425 LGIRLFEEMKSS-GCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTI 483

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IEEA   F ++   G+  S  T+N+                          
Sbjct: 484 IDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNT-------------------------- 517

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C   ++ +  EL+ Q++++GL P N  +N +++ +C++ N  + +++L TM A  
Sbjct: 518 LIDGLCKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANG 577

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK+ +   A ++   ++ +G  P    Y  VI  L +   L DA 
Sbjct: 578 FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDAL 637

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++ EM   G  P+  TY  +    CR    ++EA     EM++KG+     ++  L  G
Sbjct: 638 NLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEG 697

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L   G  D      E + +K  FR+  +  + I+GY K
Sbjct: 698 LLNLGMDDYLISAIELIIEKAKFRE--SDASAIRGYLK 733



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 139/336 (41%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N L  +L      + A+D    L   G SP+  +  + I  LC+ G     
Sbjct: 367 GCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 426

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++K  G      T+N  +     + +      L +++  +G          +I A
Sbjct: 427 IRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTYNTIIDA 486

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+  Q+   G+      FN LI   C+ K     +EL+  MV     P+
Sbjct: 487 LCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPN 546

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK G    A K+  
Sbjct: 547 NITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLR 606

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+ P    YN +I    R +NL +A  L +EM + G     +TY  +   LC  G
Sbjct: 607 GMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGG 666

Query: 389 -RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               EA+    EM  KG   +  ++  L +G    G
Sbjct: 667 GPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 702


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 166/339 (48%), Gaps = 15/339 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +I FF ++     F    V CN +    V      VA+     ++      N  S  + I
Sbjct: 90  AIDFFDYMVRSRPFYT-AVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           +C C+   +  +   F KL ++G    + T+N+ L G    DR      L+  ++E+G+L
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL 208

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
                      E   L  Q++E GL P    FN LI+  C +      + L++ MV +  
Sbjct: 209 -----------EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGL 257

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  ++NG+CK      A  + + ++E    PD V+Y+ +I  LCK G   DA+ 
Sbjct: 258 HIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQY 317

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG+ PN +TYN MI G+C      +A+RL ++M+++      +T+N LI+   
Sbjct: 318 LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASV 377

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G+  EA  L +EM  + IF D +TYN++I G+CK  +
Sbjct: 378 KEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 416



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/386 (29%), Positives = 173/386 (44%), Gaps = 64/386 (16%)

Query: 101 GFSPDLVSCNVLF------DSLVEARA---FKVAMDFLDST---------GFSPNPNSLE 142
           GF PD+V+ N L       D + EA A   + V   FL++          G +P   +  
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFN 230

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----- 197
             I  LC  G + EA    +K+   G+   + T+ + + G  K+  T     L       
Sbjct: 231 TLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEET 290

Query: 198 ----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
               D++    +I   C DG  S+   L  ++LE G+ P    +N +I  FC   +FGR 
Sbjct: 291 HIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFC---SFGRW 347

Query: 254 SE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
           S+   LL  M+ R   PD  T+  +I+   K  K  EA ++ +++  R   PDTV Y ++
Sbjct: 348 SDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSM 407

Query: 311 IHGLCKMGWLGDARKMW-------------------------------FEMIHKGLLPNE 339
           I+G CK     DA+ M+                                E+  +GL+ N 
Sbjct: 408 IYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANT 467

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN++IHG+C +DNL  A+ L +EM+  G    T+T N L+ G C + + +EA  LFE 
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           +    I  D + YN +I G CK  K+
Sbjct: 528 IQMSKIDLDTVAYNIIIHGMCKGSKV 553



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+   + + + +    K A++ L   + T   P+       I  LC+ G   +A
Sbjct: 256 GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDA 315

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              FS++ E G+  ++ T+N  + G     R     +L  D+IE            LI A
Sbjct: 316 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 375

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK+ E  +L  ++L   + P+   +N +I  FC+   F     +   M +    PD
Sbjct: 376 SVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PD 431

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+  C++++  E  ++  ++  RG V +T  Y T+IHG C++  L  A+ ++ 
Sbjct: 432 VVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQ 491

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G+ P+  T N +++G+C  + LEEA  L + +        TV YN +I G+C   
Sbjct: 492 EMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGS 551

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA+ LF  +   G+  DV TYN +I G+C +  I
Sbjct: 552 KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 588



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 147/329 (44%), Gaps = 8/329 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-DSTGFSPNPNSLEL--YIQCLCESGLIEEA 157
           G +P++ + N + D       +  A   L D      NP+ L     I    + G + EA
Sbjct: 326 GIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEA 385

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIESGYLIQAFCND 212
                ++    +F    T+NS + G  K +R D    ++      D++    +I  +C  
Sbjct: 386 EKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRA 445

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            +V EG +LLR++   GLV   T +N LI  FCE  N     +L   M++    PD  T 
Sbjct: 446 KRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITC 505

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             ++ G C++ K  EA  +F  ++      DTV Y  +IHG+CK   + +A  ++  +  
Sbjct: 506 NILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPI 565

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G+ P+  TYN MI G+C    + +A  L  +M D G+     TYNTLI G    G  D+
Sbjct: 566 HGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDK 625

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +  L  EM   G   D  T     +  C+
Sbjct: 626 SIELISEMRSNGFSGDAFTIKMAEEIICR 654



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 109/267 (40%), Gaps = 10/267 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           H    PD V+ N +     +   F  A    D    SP+  +    I   C +  ++E  
Sbjct: 394 HRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMA-SPDVVTFNTIIDVYCRAKRVDEGM 452

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++   G+  +  T+N+ + G  ++D  +    L+ ++I  G          L+  F
Sbjct: 453 QLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGF 512

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C + K+ E  EL   +    +  +  A+N +I   C+        +L  ++      PD 
Sbjct: 513 CENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDV 572

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+G C      +A  +F+ +K+ G+ PD   Y T+I G  K G +  + ++  E
Sbjct: 573 QTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISE 632

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           M   G   + +T        CR+ + E
Sbjct: 633 MRSNGFSGDAFTIKMAEEIICRVSDEE 659



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 15/132 (11%)

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           VI    +M     A  ++ +M  + +  N Y++N +I  +C    L  +     ++   G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 370 YGETTVTYNTLIAGLCLHGRTDEA---------------YHLFEEMAQKGIFRDVITYNT 414
           +    VT+NTL+ GLCL  R  EA                 LF++M + G+   VIT+NT
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNT 231

Query: 415 LIQGYCKEGKIV 426
           LI G C EG+++
Sbjct: 232 LINGLCLEGRVL 243


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  P++ + N+L +S    +    A   L      G  PN  +    I+ LC  G I E
Sbjct: 97  FGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGE 156

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
               F K+   G   ++ T+ + + G  K+  T    +L           D++    +I 
Sbjct: 157 VLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIID 216

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C D +V++ + L  +++  G+ P    +N LI   C    +  V+ LL+ MV     P
Sbjct: 217 SLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMP 276

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  V++ LCK  K +EA+ V + + +RG  P+ V Y  ++ G C    + +A K++
Sbjct: 277 NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVF 336

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ KG  P+  +Y+++I+GYC+I  +E+A  L +EM  K     TVTY+TL+ GLC  
Sbjct: 337 DTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHV 396

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR  +A  LF EM  +G   D ++Y  L+   CK  ++
Sbjct: 397 GRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRL 434



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 168/346 (48%), Gaps = 14/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P +     L  S+ + + +   +     +DS G  PN  +L + I   
Sbjct: 56  FNRMLHMHP--PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTLNILINSF 113

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C    +  AF   +K+ ++G   +I T+N+ + G     +   V  L+  +I  G+    
Sbjct: 114 CHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIGEGFQPNV 173

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C  G  S    LLR + +    P+   +  +I   C+ +   +   L   
Sbjct: 174 VTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQAFNLFSE 233

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+ +  +P  FTY  +I+ LC   +      + N++     +P+ V+++TV+  LCK G 
Sbjct: 234 MIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGK 293

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A  +   MI +G+ PN  TYN+++ G+C    ++EA ++   M+ KG+    V+Y+T
Sbjct: 294 VMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYST 353

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C   R ++A +LFEEM +K +  + +TY+TL+ G C  G++
Sbjct: 354 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRL 399



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 167/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L + L +  +   A+  L S       P+       I  LC+   + +A
Sbjct: 168 GFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTQA 227

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+  SI T+NS +     +     V  L ++++ S  +         + A
Sbjct: 228 FNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDA 287

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV E ++++  +++ G+ P    +N L+   C +       ++  TMV +  APD
Sbjct: 288 LCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPD 347

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK ++  +A  +F ++  +  +P+TV Y+T++HGLC +G L DA  ++ 
Sbjct: 348 VVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFH 407

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G +P+  +Y  ++   C+   L+EA  L K +           Y  +I G+C  G
Sbjct: 408 EMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 467

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  ++ KG+  +V TY  +I G C++G
Sbjct: 468 ELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQG 502



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 151/337 (44%), Gaps = 12/337 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G SP + + N L  +L     +K     L+   ++   PN       +  LC+ G + 
Sbjct: 236 HQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTVVDALCKEGKVM 295

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLI 206
           EA      + + GV  ++ T+N+ + G          +K+  T +      D++    LI
Sbjct: 296 EAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLI 355

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C   ++ +   L  ++    L+P    ++ L+   C          L H MV R + 
Sbjct: 356 NGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQI 415

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  +Y  +++ LCK+R+  EA  +   ++     PD  +YT VI G+C+ G L  AR +
Sbjct: 416 PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDL 475

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  +  KGL PN +TY  MI+G C+   L EA +L  EM  KGY     TYN +  G   
Sbjct: 476 FSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLR 535

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  T     L +EM  +G   DV T   L++    +G
Sbjct: 536 NNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG 572



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 139/311 (44%), Gaps = 12/311 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V  + + D+L +      A D +D     G  PN  +    +   C    ++EA   
Sbjct: 276 PNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKV 335

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
           F  +   G    + ++++ + G  KI R +    L+ ++         +    L+   C+
Sbjct: 336 FDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCH 395

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++ +   L  +++  G +P+  ++  L+   C+ +       LL  +   N  PD   
Sbjct: 396 VGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQI 455

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+G+C++ +   A  +F++L  +G  P+   YT +I+GLC+ G L +A K++ EM 
Sbjct: 456 YTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMK 515

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TYN +  G+ R +      +L +EML +G+     T   L+  L   G   
Sbjct: 516 RKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQ 575

Query: 392 EAYHLFEEMAQ 402
               +  E  Q
Sbjct: 576 SVKQILSEFLQ 586



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/342 (24%), Positives = 132/342 (38%), Gaps = 96/342 (28%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           +++A  +F+++  M    SI  +   L+   K+     V  L H                
Sbjct: 49  LDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSH---------------- 92

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
                     Q+   G+ P     N LI+ FC  +  G    +L  ++     P+  T+ 
Sbjct: 93  ----------QMDSFGIPPNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFN 142

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK-------- 325
            +I GLC   K  E   +F+ +   G+ P+ V Y T+I+GLCK+G    A +        
Sbjct: 143 TLIRGLCVEGKIGEVLHLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQG 202

Query: 326 ---------------------------MWFEMIHKGLLPNEYTYNSMIHGYCRI------ 352
                                      ++ EMIH+G+ P+ +TYNS+IH  C +      
Sbjct: 203 NCQPDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHV 262

Query: 353 -----------------------------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
                                          + EA  +   M+ +G     VTYN L+ G
Sbjct: 263 TALLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 322

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            CL    DEA  +F+ M  KG   DV++Y+TLI GYCK  +I
Sbjct: 323 HCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRI 364



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 3/180 (1%)

Query: 249 NFGRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           NF  + + L +   M+  +  P    + +++  + K +       + + +   G  P+  
Sbjct: 45  NFNTLDDALSSFNRMLHMHPPPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIY 104

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
               +I+  C +  LG A  +  +++  G  PN  T+N++I G C    + E   L  +M
Sbjct: 105 TLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKM 164

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +G+    VTY TLI GLC  G T  A  L   M Q     DV+ Y ++I   CK+ ++
Sbjct: 165 IGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQV 224


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 168/340 (49%), Gaps = 15/340 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S DL +CN+L +   ++    +A  FL      GF P+  +    I   C    +EEA
Sbjct: 102 GVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEA 161

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
               +++ EMG+   +  + + +    K    +    L+          D++    L+  
Sbjct: 162 MSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+  +   LLR + +  + P+   FN LI  F ++  F    EL + M+  + AP+
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPN 281

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C      EA ++F  ++ +G  PD V YT++I+G CK   + DA K+++
Sbjct: 282 IFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFY 341

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL  N  TY ++I G+ ++     A+ +   M+ +G      TYN L+  LC +G
Sbjct: 342 EMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNG 401

Query: 389 RTDEAYHLFEEMAQK---GIFRDVITYNTLIQGYCKEGKI 425
           +  +A  +FE+M ++   G+  ++ TYN L+ G C  GK+
Sbjct: 402 KVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLCYNGKL 441



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 98/367 (26%), Positives = 174/367 (47%), Gaps = 20/367 (5%)

Query: 76  FREFLKQQNNVLLSIRFFQWLH--SHYGFS---PDLVSCNVLFDSLVEARAFKVAM---D 127
           +RE L+   N L S++F + L   +H   S   P ++    L + + + + F V +   D
Sbjct: 40  YREILR---NGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKKFDVVINLCD 96

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            L   G S +  +  L + C C+S     A     K+ ++G    I T+ S + G    +
Sbjct: 97  HLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGN 156

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           R +    + + ++E G          +I + C +G V+    L  Q+   G+ P+   + 
Sbjct: 157 RMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            L++  C    +     LL  M  R   PD  T+  +I+   K  K L+A  ++N++   
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRM 276

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
              P+   YT++I+G C  G + +AR+M++ M  KG  P+   Y S+I+G+C+   +++A
Sbjct: 277 SIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDA 336

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            ++  EM  KG    T+TY TLI G    G+ + A  +F  M  +G+  ++ TYN L+  
Sbjct: 337 MKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHC 396

Query: 419 YCKEGKI 425
            C  GK+
Sbjct: 397 LCYNGKV 403



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 163/345 (47%), Gaps = 19/345 (5%)

Query: 88  LSIRFFQWLHSHY---GFSPDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNS 140
           +++RFFQ LH +    G S   +S + L D     RAF    ++  + L S  F+    +
Sbjct: 1   MAMRFFQ-LHRNRLVKGNSGKALSFSRLLDLSFWVRAFCNYREILRNGLHSLQFN---EA 56

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           L+L+   +    L   +   F+KL  + V   +K ++  +  C  +     +  + HDL 
Sbjct: 57  LDLFTHMVESRPL--PSIIDFTKL--LNVIAKMKKFDVVINLCDHLQ----IMGVSHDLY 108

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+  FC   +       L ++++ G  P+   F  LI+ FC          +++ M
Sbjct: 109 TCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQM 168

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           V     PD   Y  +I+ LCK+     A  +F+ ++  G  PD VMYT++++GLC  G  
Sbjct: 169 VEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNGLCNSGRW 228

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            DA  +   M  + + P+  T+N++I  + +     +A+ L+ EM+         TY +L
Sbjct: 229 RDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSL 288

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C+ G  DEA  +F  M  KG F DV+ Y +LI G+CK  K+
Sbjct: 289 INGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKV 333



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/373 (25%), Positives = 165/373 (44%), Gaps = 50/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+   L +        + AM  ++     G  P+       I  LC++G +  A
Sbjct: 137 GFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYA 196

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---TDLVW------KLYHDLIESGYLIQA 208
              F +++  G+   +  + S + G     R    D +       K+  D+I    LI A
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDA 256

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK  +  EL  +++   + P    +  LI+ FC +       ++ + M  +   PD
Sbjct: 257 FVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPD 316

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG---------- 318
              Y  +ING CK +K  +A ++F ++ ++G   +T+ YTT+I G  ++G          
Sbjct: 317 VVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEVFS 376

Query: 319 ----------------------WLGDARK--MWFEMIHK----GLLPNEYTYNSMIHGYC 350
                                 + G  +K  M FE + K    G+ PN +TYN ++HG C
Sbjct: 377 HMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIWTYNVLLHGLC 436

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
               LE+A  + ++M  +      +TY  +I G+C  G+   A +LF  +  KG+  +V+
Sbjct: 437 YNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSLPSKGVKPNVV 496

Query: 411 TYNTLIQGYCKEG 423
           TY T+I G  +EG
Sbjct: 497 TYTTMISGLFREG 509



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 65/242 (26%), Positives = 117/242 (48%), Gaps = 10/242 (4%)

Query: 196 YHDLIESGYLIQAFCNDGKV----------SEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +  L++  + ++AFCN  ++          +E  +L   ++E   +P    F KL++   
Sbjct: 24  FSRLLDLSFWVRAFCNYREILRNGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIA 83

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           + K F  V  L   +     + D +T   ++N  C+S +   A      + + G+ PD V
Sbjct: 84  KMKKFDVVINLCDHLQIMGVSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIV 143

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +T++I+G C    + +A  M  +M+  G+ P+   Y ++I   C+  ++  A  L  +M
Sbjct: 144 TFTSLINGFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQM 203

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + G     V Y +L+ GLC  GR  +A  L   M ++ I  DVIT+N LI  + KEGK 
Sbjct: 204 ENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKF 263

Query: 426 VN 427
           ++
Sbjct: 264 LD 265



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 129/281 (45%), Gaps = 15/281 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++ N L D+ V+   F  A +  +       +PN  +    I   C  G ++EA   
Sbjct: 245 PDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQM 304

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  ++  G F  +  + S + G  K  + D   K+++++ + G          LIQ F  
Sbjct: 305 FYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQKGLTGNTITYTTLIQGFGQ 364

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APD 268
            GK +   E+   ++  G+ P    +N L+   C      +   +   M  R     AP+
Sbjct: 365 VGKPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPN 424

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++GLC + K  +A  VF D+++R      + YT +I G+CK G + +A  ++ 
Sbjct: 425 IWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFC 484

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            +  KG+ PN  TY +MI G  R     EA  L ++M + G
Sbjct: 485 SLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKMKEDG 525


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF P +   N+L +   +    R  K+  + +   G  P   S    I  LC+S  ++E
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F     ++E  ++  + T++  + G  K  R D+  +L+ ++ + G          LI 
Sbjct: 277 GFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALID 336

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   ++        Q+L  G+ P+   +N L++  C+  +  +  +L+  M      P
Sbjct: 337 GQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKP 396

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+G CK      A  +   + E G V D V +T +I G C+ G + DA +  
Sbjct: 397 DKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTL 456

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G+ P++ TY  +I GYC+  N++   +L KEM   G+    +TYN L+ GLC  
Sbjct: 457 REMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQ 516

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G+   A  L E M   G+  D ITYN L++G+CK GK
Sbjct: 517 GQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK 553



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/320 (27%), Positives = 150/320 (46%), Gaps = 29/320 (9%)

Query: 109 CNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           C  L D ++ + +      F       GF P      + I   C+ G I +A   F++++
Sbjct: 191 CGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIR 250

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQV 225
           + G+  +  ++N+                          LI   C    + EG+ L + +
Sbjct: 251 KRGLRPTTVSFNT--------------------------LINGLCKSRNLDEGFRLKKTM 284

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
            E+ + P+   ++ LI   C++       +L   M  R   P+  T+  +I+G C+SR+ 
Sbjct: 285 EENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRI 344

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A   ++ +   G  PD VMY T+++GLCK+G +  ARK+  EM   G+ P++ TY ++
Sbjct: 345 DSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITYTTL 404

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I GYC+  +LE A  + K M ++G     V +  LI+G C  GR  +A     EM + G+
Sbjct: 405 IDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTLREMVEAGM 464

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             D  TY  +I GYCK+G +
Sbjct: 465 KPDDATYTMVIDGYCKKGNV 484



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 131/257 (50%), Gaps = 7/257 (2%)

Query: 173 IKTWNSALLG----CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED 228
           I  W+S  +     C ++ R       +H     GYL+    N       +    ++LE 
Sbjct: 161 IAYWDSGFVSDAIQCFRLVRNSNFQIPFHG---CGYLLDKMINSNSPVTIWTFYSEILEY 217

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P+   +N LI++FC++ +      + + +  R   P   ++  +INGLCKSR   E 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           +R+   ++E    PD   Y+ +IHGLCK G L  A +++ EM  +GL PN  T+ ++I G
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            CR   ++ A   + +ML  G     V YNTL+ GLC  G  ++A  L +EM   G+  D
Sbjct: 338 QCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPD 397

Query: 409 VITYNTLIQGYCKEGKI 425
            ITY TLI GYCKEG +
Sbjct: 398 KITYTTLIDGYCKEGDL 414



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 15/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  VS N L + L ++R           ++     P+  +  + I  LC+ G ++ A
Sbjct: 253 GLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVA 312

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F ++++ G+  +  T+ + + G  +  R D     YH         DL+    L+  
Sbjct: 313 EQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNG 372

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G V++  +L+ ++   G+ P+   +  LI  +C++ +     E+   M       D
Sbjct: 373 LCKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLD 432

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  +  +I+G C+  +  +A R   ++ E G  PD   YT VI G CK G +    K+  
Sbjct: 433 NVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLK 492

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G  P   TYN +++G C+   ++ A  L + ML+ G     +TYN L+ G C +G
Sbjct: 493 EMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + ++   L  E   KG+  D   Y +L+  Y K  K
Sbjct: 553 KAEDLLKLRNE---KGLIVDYAYYTSLVSEYNKSLK 585


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 163/341 (47%), Gaps = 15/341 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF    +SCN +  SLV+     V       +       N  + ++ I  LC+ G  ++
Sbjct: 188 YGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQK 247

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT--------DLVWKLYH-DLIESGYLIQ 207
           A      +K  G   S+ T+N+ + G  K  +         ++V K  H + I    LI 
Sbjct: 248 AGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC D  V+   ++  ++   GL P    +N LI+  C          L   M      P
Sbjct: 308 GFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP 367

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +ING CK +   EA  + +D+ +RG  P+ + + T+I    K G + DA  + 
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  G+ PN  TYN +I G+CR  N++EA++L KEM   G     VTYN L+  LC  
Sbjct: 428 SMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487

Query: 388 GRTDEAYHLFEEMA---QKGIFRDVITYNTLIQGYCKEGKI 425
           G T +A  L +EM    +KG   +++TYN LI+G+C +GK+
Sbjct: 488 GETRKAVRLLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKL 528



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 199/438 (45%), Gaps = 45/438 (10%)

Query: 19  FQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFRE 78
           F +PN+     +  T ++  +   IAKQ    ++ K   ++T  S +    FN       
Sbjct: 32  FSSPNSTYTTPNSHTFDTPTISQLIAKQ--HWSKLKTIVKETNPSSLLQHLFNS------ 83

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
             + Q +++L   +F+W    +G   ++     L   L  A+ +      LDS  F+ N 
Sbjct: 84  --EAQPDLILC--YFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDS--FAKNA 137

Query: 139 --------------------NSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
                               NS+  ++ +    ++G ++ A   F +  + G   S  + 
Sbjct: 138 HYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSC 197

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLE 227
           N  L+  +K  R  +V  +Y ++I             +I   C  GK  +  +++  +  
Sbjct: 198 NPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA 257

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            G  P    +N +I  +C+     +   LL  MVA+   P+  T+  +I+G C+      
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA 317

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A +VF +++ +G  P+ V Y ++I+GLC  G L +A  +  +M   GL PN  TYN++I+
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G+C+   L+EA+ +  ++  +G     +T+NTLI      GR D+A+ L   M   G+  
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 408 DVITYNTLIQGYCKEGKI 425
           +V TYN LI G+C+EG +
Sbjct: 438 NVSTYNCLIVGFCREGNV 455



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 135/325 (41%), Gaps = 31/325 (9%)

Query: 100 YGFSPDLVSCNVLFDSLVEA-RAFKV--AMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +GFSP +++ N + D   +A + FK    +  + +    PN  +  + I   C    +  
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA 317

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F +++  G+  ++ T+NS + G     + D    L   +   G          LI 
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC    + E  E+L  + + GL P    FN LI  + +         L   M+     P
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I G C+     EA ++  +++  G   D V Y  ++  LCK G    A ++ 
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 328 FEMI---HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            EM     KG   N  TYN +I G+C    LEEA RL  EML+KG      TY+      
Sbjct: 498 DEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDI----- 552

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDV 409
                      L +EM +KG   D+
Sbjct: 553 -----------LRDEMMEKGFIPDI 566


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 160/334 (47%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++    L   + +   + V +   +     G  P   +  + + C+C S     A C 
Sbjct: 81  PSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNIVMHCVCLSSQPCRASCF 140

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G    + T+ S L G    +R +    L+  ++  G+         LI+  C 
Sbjct: 141 LGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCK 200

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +  ++   EL  Q+  +G  P    +N L++  CE   +G  + LL  M+ R   P+  T
Sbjct: 201 NRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVIT 260

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+   K  K +EA  ++N + +    PD   Y ++I+GLC  G L +AR+M++ M 
Sbjct: 261 FTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLME 320

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  PNE  Y ++IHG+C+   +E+  ++  EM  KG    T+TY  LI G CL GR D
Sbjct: 321 RNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPD 380

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  +F +M+ +    D+ TYN L+ G C  GK+
Sbjct: 381 VAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKV 414



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 158/328 (48%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PDLV+   L +        + A+   D     GF PN  +    I+CLC++  +  A
Sbjct: 148 GFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHA 207

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F+++   G   ++ T+N+                          L+   C  G+  +
Sbjct: 208 VELFNQMGTNGSRPNVVTYNA--------------------------LVTGLCEIGRWGD 241

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LLR +++  + P    F  LI  F +        EL + M+  +  PD FTY  +IN
Sbjct: 242 AAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGSLIN 301

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC      EA ++F  ++  G  P+ V+YTT+IHG CK   + D  K+++EM  KG++ 
Sbjct: 302 GLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVA 361

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY  +I GYC +   + A+ +  +M  +       TYN L+ GLC +G+ ++A  +F
Sbjct: 362 NTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIF 421

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E M ++ +  +++TY  +IQG CK GK+
Sbjct: 422 EYMRKREMDINIVTYTIIIQGMCKLGKV 449



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 132/282 (46%), Gaps = 12/282 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L   L E   +  A   L         PN  +    I    + G + EA
Sbjct: 218 GSRPNVVTYNALVTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEA 277

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              ++ + +M V+  + T+ S + G       D   ++++ +  +G          LI  
Sbjct: 278 KELYNVMIQMSVYPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHG 337

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   +V +G ++  ++ + G+V     +  LI  +C         E+ + M +R   PD
Sbjct: 338 FCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPD 397

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLC + K  +A  +F  +++R    + V YT +I G+CK+G + DA  ++ 
Sbjct: 398 IRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFC 457

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
            +  KG+ PN  TY +MI G+CR   + EA  L K+M + G+
Sbjct: 458 SLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKEDGF 499



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 102/213 (47%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           + ++  +L  +++    +P    F +L+S   +   +  V  L   M      P   T  
Sbjct: 63  QFNDALDLFTRMVHSRPLPSIIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCN 122

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            V++ +C S +   A      + + G+ PD V +T++++G C    + DA  ++ +++  
Sbjct: 123 IVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGM 182

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  PN  TY ++I   C+  +L  A  L  +M   G     VTYN L+ GLC  GR  +A
Sbjct: 183 GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALVTGLCEIGRWGDA 242

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             L  +M ++ I  +VIT+  LI  + K GK++
Sbjct: 243 AWLLRDMMKRRIEPNVITFTALIDAFVKVGKLM 275



 Score = 43.1 bits (100), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 37/191 (19%), Positives = 73/191 (38%), Gaps = 12/191 (6%)

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCES 151
           +L    G  P+ V    L     +++  +  M     +   G   N  +  + IQ  C  
Sbjct: 317 YLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVWKLYH------DLIES 202
           G  + A   F+++        I+T+N  L G     K+++  ++++         +++  
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTY 436

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +IQ  C  GKV + ++L   +   G+ P    +  +IS FC +        L   M  
Sbjct: 437 TIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADSLFKKMKE 496

Query: 263 RNRAPDNFTYE 273
               P+   Y+
Sbjct: 497 DGFLPNESVYK 507


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 170/340 (50%), Gaps = 19/340 (5%)

Query: 104 PDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P   S + L +S V       AF V +  +   GF  N  +L L ++  C SG  ++A  
Sbjct: 75  PRFTSLSALTESFVNTHHPSFAFSV-LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMS 133

Query: 160 AFSKLKEM--GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
            FS++K     V     T+N+ + G  K  R      L+  + + G           LI 
Sbjct: 134 LFSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLID 193

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G+V EG  LL ++  +GL  +   ++ LIS FC + +     EL   M+ R  +P
Sbjct: 194 CYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELFDEMLRRKVSP 253

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  ++ GL ++ +  EA  +  D+  RG  PD V YT +  GLCK G  GDA K+ 
Sbjct: 254 NVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIKVL 313

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ KG  P   TYN +++G C+ D +++A  + + M+ KG     VTYNTL+ GLC  
Sbjct: 314 DLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGA 373

Query: 388 GRTDEAYHLFEEMAQKG--IFRDVITYNTLIQGYCKEGKI 425
           G+  EA  L++ +  +   +  DV T N LIQG CKEG++
Sbjct: 374 GKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRV 413



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 14/337 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP++V+ + L   L     ++ A + L    + G  P+  +  +    LC++G   +A  
Sbjct: 252 SPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGDAIK 311

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
               + + G      T+N  + G  K DR D  + +   +++ G          L++  C
Sbjct: 312 VLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTYNTLLKGLC 371

Query: 211 NDGKVSEGYELLRQVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             GK+ E  +L + +L +   + P+    N LI   C++      + +  +MV      +
Sbjct: 372 GAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVHDAARIHSSMVEMGLQGN 431

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G   +RK +EA +++    E G+ P+++ Y+ +I+GLCKM  L  AR ++ 
Sbjct: 432 IVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMINGLCKMQMLSVARGLFC 491

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+ P    YN+++   CR D+LE+A+ L +EM +  +    V++N +I G    G
Sbjct: 492 KMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAG 551

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A  L  EM    +  D +T++ LI  + K G +
Sbjct: 552 DVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGML 588



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 155/339 (45%), Gaps = 16/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+V+  VL D L +      A KV +D +   G  P   +  + +  LC+   +++
Sbjct: 285 GVRPDVVAYTVLADGLCKNGRAGDAIKV-LDLMVQKGEEPGTLTYNVVVNGLCKEDRMDD 343

Query: 157 AFCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKL-----YH---DLIESGYL 205
           AF     + + G      T+N+    L G  KI     +WKL     +H   D+     L
Sbjct: 344 AFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNL 403

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           IQ  C +G+V +   +   ++E GL      +N LI  +   +      +L    V    
Sbjct: 404 IQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGF 463

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +P++ TY  +INGLCK +    A  +F  +K+ G  P  + Y  ++  LC+   L  AR 
Sbjct: 464 SPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARS 523

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM +     +  ++N +I G  +  +++ AK L  EM         VT++ LI    
Sbjct: 524 LFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFS 583

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G  DEA  L+E+M   G    V+ +++L++GY  +G+
Sbjct: 584 KLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGE 622



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 14/317 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLEL--YIQCLCESGLIE 155
           G  PD V+ N L   L  A     AMD    L S  F   P+       IQ LC+ G + 
Sbjct: 355 GKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEGRVH 414

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A    S + EMG+ G+I T+N  + G +   +     KL+   +ESG+         +I
Sbjct: 415 DAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSPNSMTYSVMI 474

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C    +S    L  ++ + G+ P    +N L++  C + +  +   L   M   N  
Sbjct: 475 NGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHN 534

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            D  ++  +I+G  K+     A  + +++     VPD V ++ +I+   K+G L +A  +
Sbjct: 535 VDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGL 594

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + +M+  G +P    ++S++ GY      E+   L  +M DK     +   +T++A LC 
Sbjct: 595 YEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQMADKDVVLDSKLTSTILACLCH 654

Query: 387 HGRTDEAYHLFEEMAQK 403
             R  +   +  + +Q+
Sbjct: 655 MSRNLDVEKILPKFSQQ 671



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 58/127 (45%), Gaps = 2/127 (1%)

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P     +T+I  L K         ++ +M+   +LP   + +++   +    +   A  +
Sbjct: 40  PSEPACSTLIDNLRKARQYDAVVSVYHKMVSALVLPRFTSLSALTESFVNTHHPSFAFSV 99

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK--GIFRDVITYNTLIQGY 419
              M  +G+G      N ++ G C  G+ D+A  LF +M +    +  D +TYNTL+ G+
Sbjct: 100 LSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSLFSQMKRNYDCVVPDCVTYNTLVNGF 159

Query: 420 CKEGKIV 426
           CK  ++ 
Sbjct: 160 CKAKRLA 166


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ N +  +L +ARA     V +  +   G  PN  +    +   C SG   +A
Sbjct: 233 GLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDA 292

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++   GV   + T+N+ +    K  R+    K++  +++ G+         L+  
Sbjct: 293 IGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATYGTLLHG 352

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +G + + + LL  ++ +G+ P++  FN LI  + +         L   M  +   PD
Sbjct: 353 YATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPD 412

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  V++ LC   K  +A   F  L   G  PD V++  +IHGLC       A ++  
Sbjct: 413 TVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAV 472

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI +G+ PN   +N++++  C+   +  AK +   M+        +TYNTLI G CLHG
Sbjct: 473 EMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHG 532

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA  L E M   G+  + +TYNT+I GYCK G+I
Sbjct: 533 KVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRI 569



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 26/296 (8%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D +   G  P+     + I    + G +++A   FSK++  G                 
Sbjct: 366 LDMMVRNGIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQG----------------- 408

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
                    L  D +  G ++ A C  GKV +      +++ +GL P+   F  LI   C
Sbjct: 409 ---------LNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHGLC 459

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
            +  + +  EL   M+ R   P+N  +  ++N LCK      A  +F+ +       D +
Sbjct: 460 ARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRDVI 519

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T+I G C  G + +A K+   M+  G+ PNE TYN+MI+GYC+   +E+A  L ++M
Sbjct: 520 TYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTYNTMINGYCKNGRIEDAFSLFRQM 579

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             KG     VTY+T++ GL    RT  A  L+  M + GI  D+ TYN ++ G C+
Sbjct: 580 ASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMIKSGIKFDIGTYNIILLGLCQ 635



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 137/268 (51%), Gaps = 16/268 (5%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQ 224
           T++  +  C ++   DL +     +I SG+         L++A C+  + SE  ++ LR+
Sbjct: 93  TYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDIALRR 152

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-----PDNFTYEEVINGL 279
           +   G  P   ++  L+   C++    +   LLHTM+  +       PD  +Y  VINGL
Sbjct: 153 MPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTVINGL 212

Query: 280 CKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            +  ++L+ AY +F+ + ++G  PD V Y ++I  L K   +  A  +   M+  G +PN
Sbjct: 213 LREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNGAMPN 272

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             T+NS++HGYC      +A  + K M   G      TYNTL+  LC +GR+ EA  +F+
Sbjct: 273 RITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFD 332

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            M ++G   +  TY TL+ GY  EG +V
Sbjct: 333 SMVKRGHKPNSATYGTLLHGYATEGSLV 360



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 154/341 (45%), Gaps = 19/341 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF-C 159
           P+L++ +V+ D         +A   L     +G++    +    ++ LC+     EA   
Sbjct: 89  PNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGWTAEAITFSPLLKALCDKKRTSEAMDI 148

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------------DLIESGYL 205
           A  ++  +G   ++ ++   L G    +R+     L H              D++    +
Sbjct: 149 ALRRMPVLGCTPNVFSYTILLKGLCDENRSQQALHLLHTMMVADDTRGGYPPDVVSYNTV 208

Query: 206 IQAFCNDGK-VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           I     +G+ +   Y L  Q+L+ GL P+   +N +IS   + +   + + +L  MV   
Sbjct: 209 INGLLREGRQLDTAYHLFDQMLDQGLSPDVVTYNSIISALSKARAMDKAAVVLVRMVKNG 268

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  T+  +++G C S K  +A  VF  +   G  PD   Y T++  LCK G   +AR
Sbjct: 269 AMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEAR 328

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++  M+ +G  PN  TY +++HGY    +L +   L   M+  G       +N LI   
Sbjct: 329 KIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHHLLDMMVRNGIQPDHYIFNILIGTY 388

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             HG+ D+A  LF +M ++G+  D +TY  ++   C  GK+
Sbjct: 389 TKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKV 429



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/335 (23%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD    N+L  +  +      AM         G +P+  +  + +  LC  G +++A
Sbjct: 373 GIQPDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDA 432

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F +L   G+      + + + G    D+ D   +L  ++I  G          L+  
Sbjct: 433 MAQFGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNH 492

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V+    +   ++   +  +   +N LI  +C        ++LL  MV     P+
Sbjct: 493 LCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPN 552

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING CK+ +  +A+ +F  +  +G  P  V Y+T++ GL +      A++++ 
Sbjct: 553 EVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYL 612

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  G+  +  TYN ++ G C+ +  ++A R+ + +    +     T+N +I  L   G
Sbjct: 613 WMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGG 672

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R DEA  LF  +  +G+  +V+TY  +++   ++G
Sbjct: 673 RHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQG 707


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  169 bits (427), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 166/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++V+ + L +    ++    A+  +D    TG+ PN  +    I  L       EA
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGYLI-----QA 208
                ++   G    + T+   + G  K   TDL + L + +    +E G LI       
Sbjct: 206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    + +   L +++   G+ P    ++ LIS  C    +   S LL  M+ R   PD
Sbjct: 266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +I+   K  K +EA ++++++ +R   P  V Y+++I+G C    L +A++M+ 
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K   P+  TYN++I G+C+   +EE   + +EM  +G    TVTYN LI GL   G
Sbjct: 386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F+EM   G+  +++TYNTL+ G CK GK+
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 172/336 (51%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDLV+  V+ + L +     +A + L+        P        I  LC+   +++A
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 275

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 276 LNLFKEMETKGIRPNVVTY-SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK+ E  +L  ++++  + P    ++ LI+ FC         ++   MV+++  P
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I G CK ++  E   VF ++ +RG V +TV Y  +I GL + G    A++++
Sbjct: 395 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 454

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G+ PN  TYN+++ G C+   LE+A  + + +       T  TYN +I G+C  
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 514

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+ ++ + LF  ++ KG+  DV+ YNT+I G+C++G
Sbjct: 515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKG 550



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P+ V+ N L   L        AM  +D   + G  P+  +  + +  LC+ G  + A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K+++  +   +  +N+ + G  K    D    L+ ++   G          LI  
Sbjct: 241 FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  ++E  + P+   F+ LI  F ++       +L   MV R+  P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C   +  EA ++F  +  +   PD V Y T+I G CK   + +  +++ 
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 420

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TYN +I G  +  + + A+ + KEM+  G     +TYNTL+ GLC +G
Sbjct: 421 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +FE + +  +   + TYN +I+G CK GK+
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 143/296 (48%), Gaps = 13/296 (4%)

Query: 144 YIQCLCESGL----IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           Y + L  +GL    +++A   F ++ +   F SI  ++  L    K+++ D+V  L   +
Sbjct: 48  YREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQM 107

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G          LI  FC   ++     +L ++++ G  P     + L++ +C  K  
Sbjct: 108 QNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRI 167

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                L+  M      P+  T+  +I+GL    K  EA  + + +  +G  PD V Y  V
Sbjct: 168 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVV 227

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           ++GLCK G    A  +  +M    L P    YN++I G C+  ++++A  L KEM  KG 
Sbjct: 228 VNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGI 287

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               VTY++LI+ LC +GR  +A  L  +M ++ I  DV T++ LI  + KEGK+V
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLV 343



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 15/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++V+ + L   L      + A ++  D ++    +P+  +    I    + G + E
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INPDVFTFSALIDAFVKEGKLVE 344

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   + ++ +  +  SI T++S + G    DR D   +++          D++    LI+
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIK 404

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   +V EG E+ R++ + GLV     +N LI    +  +     E+   MV+    P
Sbjct: 405 GFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPP 464

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++GLCK+ K  +A  VF  L+     P    Y  +I G+CK G + D   ++
Sbjct: 465 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ P+   YN+MI G+CR  + EEA  L KEM + G    +  YNTLI      
Sbjct: 525 CNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRD 584

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + +  L +EM   G   D  T   L+     +G++
Sbjct: 585 GDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRL 621


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 175/349 (50%), Gaps = 24/349 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + +VL D L +      A   L+     G   +  +    ++ LC    I +A
Sbjct: 523 GIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKA 582

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------------IES 202
              F K++++G   ++ T  + + G  +     +  +L+ ++               I  
Sbjct: 583 TQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISY 642

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C  G+  E  EL +++   G++P+  ++  LI  FC    +     L + MV 
Sbjct: 643 SIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVD 702

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T+  +I+ LCK  K +EA  +   + +RG +P+TV YTT++ GLC    + +
Sbjct: 703 IGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISE 762

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKG-YGET----TVT 376
           A +++ +M   G LP+  TY +++ G C+  N++ A  LHK+ML D G YG       ++
Sbjct: 763 ATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVIS 822

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y+ +I GLC HGR DEA  LF+EM   G+  +VI+Y +LI G+C+ GK+
Sbjct: 823 YSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKL 871



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 23/369 (6%)

Query: 80  LKQQNNVLLSIRFFQWL---HSHYGFS--PDLVSCNVLFDSLVEARAFKVAMDF---LDS 131
           L Q  N+ ++++  Q +      YG    P L+S +++ D L + R    A +    + +
Sbjct: 427 LCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKA 486

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P+  S    I   C SG  E+A C F+++ ++G+   + T +  +    K  +   
Sbjct: 487 QGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIE 546

Query: 192 VWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
             KL   +I+ G          L++  C   ++S+  +L  ++ + G +P       L+ 
Sbjct: 547 ANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKLGCMPNVVTCATLMK 606

Query: 243 RFCEKKNFGRVSELLHTMVAR------NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             C+  N     EL   M++       N  P+  +Y  +I+GLCK  +  EA  +F ++K
Sbjct: 607 GLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMK 666

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G +PD + YT++IHG C+ G   DA+ ++ EM+  G+ P+  T++ +I   C+   + 
Sbjct: 667 ALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVI 726

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  L + M+ +G    TVTY TL+ GLC++ R  EA  LF +M + G   DV+TY TL+
Sbjct: 727 EANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLM 786

Query: 417 QGYCKEGKI 425
           +G C+ G I
Sbjct: 787 KGLCQTGNI 795



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 169/340 (49%), Gaps = 41/340 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF-----LDSTGFS----PNPNSLELYIQCLCES 151
           G  P++V+C  L   L ++   K+A++       D++ +     PN  S  + I  LC+ 
Sbjct: 593 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC 652

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
           G  +EA   F ++K +GV   + ++ S                          LI  FC 
Sbjct: 653 GREDEARELFKEMKALGVIPDVISYTS--------------------------LIHGFCR 686

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  +   L  ++++ G+ P+ T F+ LI   C++      +ELL  M+ R   P+  T
Sbjct: 687 SGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVT 746

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++ GLC + +  EA ++F  +++ G +PD V Y T++ GLC+ G +  A ++  +M+
Sbjct: 747 YTTLVKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKML 806

Query: 332 H------KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
                      P+  +Y+ +I G C+    +EA+ L KEM   G     ++Y +LI G C
Sbjct: 807 SDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFC 866

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+ ++A HLF EM  +G+  + +TY+ +I G+CKEG+I
Sbjct: 867 RSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQI 906



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/375 (29%), Positives = 182/375 (48%), Gaps = 30/375 (8%)

Query: 80  LKQQNNVLLSIRFFQWL---HSHYGFS--PDLVSCNVLFDSLVEARAFKVAMDF---LDS 131
           L Q  N+ ++++  Q +      YG    P L+S +++ D L + R    A +    + +
Sbjct: 134 LCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKA 193

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL-LGCIK---ID 187
            G  P+  S    I   C SG  E+A C F+++ ++G+   + T    + + C +   I+
Sbjct: 194 QGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIE 253

Query: 188 RTDLVWKLYH-----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
             +L+  + H     D++    LI+  C   ++SE  +L   + + G  P+  A+  L+ 
Sbjct: 254 ANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMK 313

Query: 243 RFCEKKNFGRVSELLHTMVARNRA-------PDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
             C+         L   M+            PD  T   +I+ LCK  K +EA  +   +
Sbjct: 314 GLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVM 373

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            +RG + D V Y+T+I GLC    + +A  ++  M   G  P+  TY +++ G C+  N+
Sbjct: 374 IQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNI 433

Query: 356 EEAKRLHKEML-DKG-YG----ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
             A +LH+EML D G YG     T ++Y+ +I GLC   R DEA  LFEEM  +GI  DV
Sbjct: 434 NIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDV 493

Query: 410 ITYNTLIQGYCKEGK 424
           I+Y TLI G+C  GK
Sbjct: 494 ISYTTLIHGFCLSGK 508



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 143/335 (42%), Gaps = 58/335 (17%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P+  +  + I CLC    + E   A + +   G    I T++              
Sbjct: 4   AGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYS-------------- 49

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
              +  D+  S  LI   C +GKV E  ELL  +++ G + +   ++ LI   C +    
Sbjct: 50  ---IRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRIS 106

Query: 252 RVSELLHTMVARNRAPDNFTYEE------------------------------------- 274
             + L  +M      PD  TY                                       
Sbjct: 107 EATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLI 166

Query: 275 ----VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
               +I+GLCK R+  EA  +F ++K +G +PD + YT++IHG C  G    A+ ++ EM
Sbjct: 167 SYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEM 226

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +  G+ P+  T   +I  +C+   + EA  L + M+ +G     VTY+TLI GLC+  R 
Sbjct: 227 LDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRI 286

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA  LF  M + G   D I Y TL++G C+ GKI
Sbjct: 287 SEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKI 321



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 155/341 (45%), Gaps = 42/341 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM----DFLDSTG-----FSPNPNSLELYIQCLCES 151
           G  PD ++   L   L +     +A+    + L+ TG       P   S  + I  LC+ 
Sbjct: 119 GCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKD 178

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
              +EA   F ++K  G+   + ++ S                          LI  FC+
Sbjct: 179 RREDEARELFKEMKAQGMMPDVISYTS--------------------------LIHGFCH 212

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  +   L  ++L+ G+ P+ T    LI  FC++      +ELL  MV R    D  T
Sbjct: 213 SGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVT 272

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I GLC   +  EA ++F  +K+ G  PD + Y T++ GLC+ G +  A  +  EM+
Sbjct: 273 YSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEML 332

Query: 332 H-------KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +       K + P+  T + +I   C+   + EA  L + M+ +G     VTY+TLI GL
Sbjct: 333 NDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL 392

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C+  R  EA  LF  M + G   D ITY TL++G C+ G I
Sbjct: 393 CMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNI 433



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 170/391 (43%), Gaps = 62/391 (15%)

Query: 98  SHYGFS---PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCES 151
           S YG     PD+ + ++L D L +      A + L+     G   +  +    I+ LC  
Sbjct: 336 SQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCME 395

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------------- 198
             I EA   F  ++++G      T+ + + G  +    ++  +L+ +             
Sbjct: 396 HRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCK 455

Query: 199 --LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
             LI    +I   C D +  E  EL  ++   G++P+  ++  LI  FC    + +   L
Sbjct: 456 PTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCL 515

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M+     PD  T   +I+ LCK  K +EA ++   + +RG + D V  TT++ GLC 
Sbjct: 516 FNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCM 575

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD--KGYG--- 371
              +  A +++ +M   G +PN  T  +++ G C+  N++ A  LHK ML     YG   
Sbjct: 576 KHRISKATQLFLKMQKLGCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINC 635

Query: 372 -ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC---------- 420
               ++Y+ +I GLC  GR DEA  LF+EM   G+  DVI+Y +LI G+C          
Sbjct: 636 KPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKY 695

Query: 421 -------------------------KEGKIV 426
                                    KEGK++
Sbjct: 696 LFNEMVDIGVQPDVTTFSVLIDMLCKEGKVI 726



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 160/360 (44%), Gaps = 34/360 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGF---------SPNPNSLELYIQCL 148
           G  PD  + N+L + L   +       AM  +   G+          P+  +  + I  L
Sbjct: 5   GLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDIL 64

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYH--------DL 199
           C+ G + EA      + + G    I T+++ + G C++   ++  W            D 
Sbjct: 65  CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDA 124

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDG------LVPENTAFNKLISRFCEKKNFGRV 253
           I  G L++  C  G ++   +L +++L D         P   +++ +I   C+ +     
Sbjct: 125 ITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEA 184

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            EL   M A+   PD  +Y  +I+G C S K  +A  +FN++ + G  PD      +I  
Sbjct: 185 RELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDM 244

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            CK G + +A ++   M+H+G + +  TY+++I G C    + EA +L   M   G    
Sbjct: 245 FCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPD 304

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-------KGIFRDVITYNTLIQGYCKEGKIV 426
            + Y TL+ GLC  G+ + A HL +EM         K I  DV T + LI   CKEGK++
Sbjct: 305 AIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVI 364


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 157/326 (48%), Gaps = 30/326 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G++P +++ N +  +L +A +   A  F DS    G +PN  +  + ++ LC  G  +EA
Sbjct: 118 GYAPSVLAYNAVLLALSDA-SLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 176

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 ++  G   +  T+N+                          L+ AFC  G+V  
Sbjct: 177 LSVLRDMRGAGCDPNAVTYNT--------------------------LVAAFCRAGEVDR 210

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L+  + E GL P    FN +++  C+        ++   MV    APD  +Y  ++ 
Sbjct: 211 AERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVG 270

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK     EA  VF ++  +G +PD V +T++IH +CK G L  A  +  EM  +GL  
Sbjct: 271 GYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQM 330

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NE T+ ++I G+C+   L++A    +EM       + V YN LI G C+ GR DEA  L 
Sbjct: 331 NEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELV 390

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
            EM  KG+  DV+TY+T++  YCK G
Sbjct: 391 REMEAKGVKPDVVTYSTILSAYCKNG 416



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 171/347 (49%), Gaps = 13/347 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQC 147
           RFF  + S  G +P++ + N+L  +L      K A+  L      G  PN  +    +  
Sbjct: 143 RFFDSMLSD-GVAPNVYTYNILVRALCGRGHRKEALSVLRDMRGAGCDPNAVTYNTLVAA 201

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C +G ++ A      ++E G+  ++ T+NS + G  K  R +   K++ ++++ G    
Sbjct: 202 FCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPD 261

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+  +C  G   E   +  ++   G++P+   F  LI   C+  N  R   L+ 
Sbjct: 262 GVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVR 321

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  R    +  T+  +I+G CK     +A     ++++    P  V Y  +I+G C +G
Sbjct: 322 EMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVG 381

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +AR++  EM  KG+ P+  TY++++  YC+  +   A +L+++ML+ G     +TY+
Sbjct: 382 RMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYS 441

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +LI  LC   R  +A+ LF+ M   G+  D +TY +LI G+CKEG +
Sbjct: 442 SLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNV 488



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 159/350 (45%), Gaps = 27/350 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ N + + + +A   + A    D     G +P+  S    +   C+ G   EA
Sbjct: 222 GLKPNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEA 281

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++   G+   + T+ S +    K    +    L  ++ E G          LI  
Sbjct: 282 LSVFAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDG 341

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + +    +R++ +  + P    +N LI+ +C         EL+  M A+   PD
Sbjct: 342 FCKKGFLDDALLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPD 401

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++  CK+     A+++   + E G +PD + Y+++I  LC+   LGDA  ++ 
Sbjct: 402 VVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFK 461

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  GL P+E TY S+I G+C+  N+E A  LH EM+  G     VTY+ LI GL    
Sbjct: 462 NMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSA 521

Query: 389 RTDEAYHLF-----EEMAQKGIFRDVI----------TYNTLIQGYCKEG 423
           RT EA  L      EE     I  D +          +   L++G+C +G
Sbjct: 522 RTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKG 571



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 151/336 (44%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L  +   A     A   +D +   G  PN  +    +  +C++G +E+A
Sbjct: 187 GCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDA 246

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+     ++N+ + G  K+  +     ++ ++   G          LI  
Sbjct: 247 RKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHV 306

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +     L+R++ E GL      F  LI  FC+K         +  M      P 
Sbjct: 307 MCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDALLAVREMRQCRIQPS 366

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +ING C   +  EA  +  +++ +G  PD V Y+T++   CK G    A ++  
Sbjct: 367 VVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQLNQ 426

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G+LP+  TY+S+I   C    L +A  L K M+  G     VTY +LI G C  G
Sbjct: 427 QMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEG 486

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             + A  L +EM + G+  DV+TY+ LI G  K  +
Sbjct: 487 NVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSAR 522



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 167/353 (47%), Gaps = 27/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   L   + +A   + A+     +   G   N  +    I   C+ G +++A
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCKKGFLDDA 351

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             A  ++++  +  S+  +N+ + G   + R D   +L           D++    ++ A
Sbjct: 352 LLAVREMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSA 411

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G     ++L +Q+LE+G++P+   ++ LI   CE+K  G    L   M++    PD
Sbjct: 412 YCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPD 471

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK      A  + +++ + G +PD V Y+ +I+GL K     +A+++ F
Sbjct: 472 EVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLF 531

Query: 329 EMIHKGLLPNEYTYNSMIH---------------GYCRIDNLEEAKRLHKEMLDKGYGET 373
           ++ H+  +P    Y++++                G+C    + EA ++++ +LD+ +   
Sbjct: 532 KLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLD 591

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              Y+ LI G C  G   +A    ++M Q G   +  +  +LI+G  ++G +V
Sbjct: 592 GSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVV 644


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  168 bits (426), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 172/375 (45%), Gaps = 47/375 (12%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G  PD+V+ N + D+L  AR  + A+  L+   S   +P+  +    ++   E G I
Sbjct: 188 SSQGIEPDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSI 247

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT------------------------- 189
           E A    +++ EMG   +  T N  + G  K+ R                          
Sbjct: 248 EAALRLKARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTF 307

Query: 190 ----------DLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
                     D   K+   +++ G          +I   CN+G++ E   ++ Q+++ G 
Sbjct: 308 VNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGC 367

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           +P+ T FN LI   C +       +L   +  +  +P+ +T+  +IN LCK      A R
Sbjct: 368 LPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVR 427

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++K  G  PD V Y  +I  LC  G L  A  +  EM   G   +  TYN++I G C
Sbjct: 428 LFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLC 487

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +EEA+ +  +M   G G   +T+NTLI GLC   R D+A  L ++M  +G+  + +
Sbjct: 488 KRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPNNV 547

Query: 411 TYNTLIQGYCKEGKI 425
           TYN+++  YCK+G I
Sbjct: 548 TYNSILTHYCKQGNI 562



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 148/330 (44%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD V+ +   + L +      A KV +  +   G  P+  +    I CLC +G +EE
Sbjct: 296 GFEPDRVTFSTFVNGLCQNGHVDHALKV-LGLMLQEGCEPDVYTYSTVINCLCNNGELEE 354

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ + G      T+N+ ++     ++ +    L  +L   G          LI 
Sbjct: 355 AKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILIN 414

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G       L  ++   G  P+   +N LI   C      +  +LL  M       
Sbjct: 415 ALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQ 474

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+GLCK R+  EA  VF+ +   G   + + + T+I GLC    + DA ++ 
Sbjct: 475 STVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELV 534

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +GL PN  TYNS++  YC+  N+ +A  + + M   G+    VTY TLI GLC  
Sbjct: 535 DQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKA 594

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            RT  A  L   M  KG+      YN +IQ
Sbjct: 595 RRTQAALKLLRGMRMKGMKPTPKAYNPVIQ 624



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 146/324 (45%), Gaps = 14/324 (4%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LFD      AF +  + LD  G   N       +  L E   I+    A++++   G+  
Sbjct: 140 LFDD-----AFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEP 194

Query: 172 SIKTWNSAL--LGCIKIDRTDLVW-------KLYHDLIESGYLIQAFCNDGKVSEGYELL 222
            + T+N+ +  L   +  RT ++         +  D      L++ F  +G +     L 
Sbjct: 195 DVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLK 254

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++ E G  P +   N LI+ +C+    G     +   +A    PD  T+   +NGLC++
Sbjct: 255 ARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQN 314

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
                A +V   + + G  PD   Y+TVI+ LC  G L +A+ +  +M+  G LP+  T+
Sbjct: 315 GHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTF 374

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N++I   C  + LEEA  L +E+  KG      T+N LI  LC  G    A  LFEEM  
Sbjct: 375 NTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKS 434

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
            G   D +TYN LI   C  GK+ 
Sbjct: 435 SGCTPDEVTYNILIDNLCSSGKLA 458



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 155/338 (45%), Gaps = 33/338 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY--- 144
           L++R F+ + S  G +PD V+ N+L D+L  +     A+D L     S  P S   Y   
Sbjct: 424 LAVRLFEEMKSS-GCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTI 482

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IEEA   F ++   G+  +  T+N+                          
Sbjct: 483 IDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNT-------------------------- 516

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   CN  ++ +  EL+ Q++ +GL P N  +N +++ +C++ N  + +++L TM A  
Sbjct: 517 LIDGLCNAERIDDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANG 576

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK+R+   A ++   ++ +G  P    Y  VI  L +     DA 
Sbjct: 577 FEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDAL 636

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++ EM   G  P+ +TY  +  G CR    ++EA     EM D G+     ++  L  G
Sbjct: 637 SLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEG 696

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L   G  D      E + +K  FR+  +  + I+GY +
Sbjct: 697 LLNLGMDDYLIRAIELIVEKANFRE--SDISAIRGYLR 732



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 135/336 (40%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N L  +L      + A+D    L   G SPN  +  + I  LC+ G    A
Sbjct: 366 GCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLA 425

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++K  G      T+N  +       +      L  ++  SG          +I  
Sbjct: 426 VRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDG 485

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+  Q+   G+      FN LI   C  +     +EL+  M++    P+
Sbjct: 486 LCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMISEGLQPN 545

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK      A K+  
Sbjct: 546 NVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAALKLLR 605

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+ P    YN +I    R +N  +A  L +EM + G      TY  +  GLC  G
Sbjct: 606 GMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGG 665

Query: 389 -RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               EA+    EMA  G   +  ++  L +G    G
Sbjct: 666 GPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLG 701


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 161/340 (47%), Gaps = 31/340 (9%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYI 145
           + FFQW  S   ++   +S N L + L ++      +    D L + G  PN  +    +
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDML-AAGCVPNTYTYGYLL 59

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           + LC++   EEA   F  +   G   ++ +++                           L
Sbjct: 60  RSLCQAQRFEEARSVFRGMAAQGCSPNVFSYS--------------------------IL 93

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   KV E  ELL ++++ G  P    +  L+S  C+        +L   MV R  
Sbjct: 94  IAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGC 153

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD   Y  +I+G  K     EAYR+F ++ E+G +P    Y +++ G  + G  G  + 
Sbjct: 154 PPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQS 213

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M+ +G +PN +T+N+++ G+C++ ++ EA RL  EM   G     V+YNTLI G+C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMC 273

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+  EA  L  EM + G+  D+++YN LI GY K G +
Sbjct: 274 SKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGAL 313



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 163/333 (48%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +   L  SL +A+ F+ A      + + G SPN  S  + I  LC    ++EA
Sbjct: 47  GCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEA 106

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++ + G   ++ T+ S L G  K+ +      L+  ++  G          LI  
Sbjct: 107 AELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDG 166

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + E Y L  ++LE G +P    +N L+S F  K  FGRV  L   M+ +   P+
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPN 226

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +++G CK    +EA+R+F +++  G  PD V Y T+I G+C  G   +A+++  
Sbjct: 227 IFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLR 286

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G+ P+  +YN +I GY +   L+ A +L  E+   G      +Y+T+I  LC  G
Sbjct: 287 EMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAG 346

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +   A+ +F++M   G   D      L+ G C+
Sbjct: 347 KVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCR 379



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 125/230 (54%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H  +   YL++     G+    Y     +L  G VP    +  L+   C+ + F     +
Sbjct: 15  HGTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSV 74

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M A+  +P+ F+Y  +I GLC+ +K  EA  + N++ + G+ P+ V Y +++ GLCK
Sbjct: 75  FRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCK 134

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           MG L +A  ++  M+++G  P+   YN +I G+ +  ++ EA RL +EML+KG   T  T
Sbjct: 135 MGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFT 194

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YN+L++G    G       LF++M ++G   ++ T+N L+ G+CK G +V
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMV 244



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 145/333 (43%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ S ++L   L   +    A + L+     G  PN  +    +  LC+ G ++EA
Sbjct: 82  GCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEA 141

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              FS++   G       +N  + G  K       ++L+ +++E G          L+  
Sbjct: 142 VDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSG 201

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G+      L + +L  G VP    FN L+  FC+  +      L   M +    PD
Sbjct: 202 FSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPD 261

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I G+C   K  EA R+  ++   G  PD V Y  +I G  K G L  A K+++
Sbjct: 262 VVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFY 321

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+   GL P+ ++Y+++I   CR   +  A  + K+M+  G          L+ GLC   
Sbjct: 322 EIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           R  E+  LF+ M +      +  YN L+   CK
Sbjct: 382 RLTESCELFQAMVKFECVPLIPEYNLLMYKLCK 414



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 67/317 (21%), Positives = 129/317 (40%), Gaps = 47/317 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+   L   L +    K A+D        G  P+     + I    + G + EA
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
           +  F ++ E G   ++ T+NS L G  +      V  L+ D++  G              
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 204 ------------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          LI+  C+ GK  E   LLR+++  G+ P+
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             ++N LI  + +        +L + +      PD F+Y  +I+ LC++ K   A+ VF 
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+   G  PD  +   ++ GLC+   L ++ +++  M+    +P    YN +++  C+  
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAK 416

Query: 354 NLEEAKRLHKEMLDKGY 370
             ++   +  E+ ++G+
Sbjct: 417 RSDDVCEIFHELTERGF 433



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 9/236 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    +   C+ G + EA   F +++ +G    + ++N+ + G     +    
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEA 281

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++I SG          LI  +   G +    +L  ++ + GL P+  +++ +I  
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C     G    +   M+A   APD      ++ GLC+  +  E+  +F  + +   VP 
Sbjct: 342 LCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPL 401

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
              Y  +++ LCK     D  +++ E+  +G  P+      ++    R D+ + A+
Sbjct: 402 IPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKDAAE 457


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/335 (30%), Positives = 162/335 (48%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G   ++ + NVL +S         AF V    L   G  P+  S    I+ LC  G I 
Sbjct: 103 FGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKIL-KLGCQPDTASFTTLIKGLCLEGQIG 161

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
           EA   F K+   G    +  + + + G  K   T    +L           D++  G LI
Sbjct: 162 EALHLFDKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLI 221

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D + ++ + L  +++  G+ P     N L+   C    +  V+ LL+ MV     
Sbjct: 222 HSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIM 281

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +   V++ LCK     +A+ V + + + G  PD V YT +I G C    + +A K+
Sbjct: 282 PNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKV 341

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+HKG  PN ++YN++I+GYC+I+ +++A  L +EM  +     TVTYNTLI GLC 
Sbjct: 342 FDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCH 401

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR  +A  LF EM   G   D++TY  L+   CK
Sbjct: 402 VGRLQDAIALFREMVACGQIPDLVTYRILLDYLCK 436



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V    L + L +      A+  L S       P+       I  LC+     +A
Sbjct: 174 GFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQA 233

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+  +I T NS +     +     V  L +++++S  +         + A
Sbjct: 234 FNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDA 293

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V++ ++++  + + G+ P+   +  LI   C +       ++   MV +  AP+
Sbjct: 294 LCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPN 353

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F+Y  +ING CK  +  +A  +F ++  +  +P+TV Y T+IHGLC +G L DA  ++ 
Sbjct: 354 VFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFR 413

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  ++   C+  +L++A  L K +           Y  +I G+C  G
Sbjct: 414 EMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAG 473

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             ++A  LF  ++ KG+  +V TYN +  G CK G
Sbjct: 474 ELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRG 508



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 150/335 (44%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+CN L  +L     +K     L+    +   PN  SL   +  LC+ G++ +A
Sbjct: 244 GISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKEGMVAQA 303

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + + GV   + T+ + + G       D   K++  ++  G          LI  
Sbjct: 304 HDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSYNTLING 363

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +   L  ++    L+P    +N LI   C          L   MVA  + PD
Sbjct: 364 YCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPD 423

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+    +A  +   ++     PD  +YT VI G+C+ G L DAR ++ 
Sbjct: 424 LVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFS 483

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL PN +TYN M HG C+   L+EA +L  EM +        TYNT+  G   + 
Sbjct: 484 NLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNTITQGFLRNN 543

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            T  A  L EEM  +G   DV T   L+     +G
Sbjct: 544 ETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDG 578



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 161/348 (46%), Gaps = 18/348 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P +V    +  S+ + + +   +     +DS G   N  +L + I   
Sbjct: 62  FNRMLHMHP--PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLINSF 119

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIK---------IDRTDLVWKLYH- 197
           C    +  AF   +K+ ++G      ++ + + G C++          D+  ++W+ +  
Sbjct: 120 CHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDK--MIWEGFQP 177

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    LI   C  G  S    LLR + +    P+   +  LI   C+ +   +   L 
Sbjct: 178 DVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKDRQQTQAFNLF 237

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ +  +P+  T   ++  LC   +      + N++ +   +P+ +  TTV+  LCK 
Sbjct: 238 SEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAISLTTVVDALCKE 297

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +  A  +   M   G+ P+  TY ++I G+C    ++EA ++   M+ KG      +Y
Sbjct: 298 GMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHKGCAPNVFSY 357

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NTLI G C   R D+A +LFEEM ++ +  + +TYNTLI G C  G++
Sbjct: 358 NTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRL 405



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 77/309 (24%), Positives = 141/309 (45%), Gaps = 12/309 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ +S   + D+L +      A D +D    +G  P+  +    I   C    ++EA   
Sbjct: 282 PNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKV 341

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
           F  +   G   ++ ++N+ + G  KI+R D    L+ ++         +    LI   C+
Sbjct: 342 FDMMVHKGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCH 401

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++ +   L R+++  G +P+   +  L+   C+  +  +   LL  +   N  PD   
Sbjct: 402 VGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQI 461

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+G+C++ +  +A  +F++L  +G  P+   Y  + HGLCK G L +A K++ EM 
Sbjct: 462 YTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMD 521

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                 +  TYN++  G+ R +    A +L +EML +G+     T   L+  L   G   
Sbjct: 522 ENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTTLLVGMLSDDGLDQ 581

Query: 392 EAYHLFEEM 400
              H  E+M
Sbjct: 582 SEAHKLEDM 590



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 69/137 (50%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN +      P  V +  ++  + K+        +  +M   G+  N YT N +I
Sbjct: 57  DALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNVLI 116

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C ++ +  A  +  ++L  G    T ++ TLI GLCL G+  EA HLF++M  +G  
Sbjct: 117 NSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIWEGFQ 176

Query: 407 RDVITYNTLIQGYCKEG 423
            DV+ Y TLI G CK G
Sbjct: 177 PDVVIYATLINGLCKTG 193



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 46/106 (43%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DA   +  M+H    P+   +  ++    ++        L ++M   G      T N 
Sbjct: 55  LDDALSSFNRMLHMHPPPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTLNV 114

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI   C   R + A+ +  ++ + G   D  ++ TLI+G C EG+I
Sbjct: 115 LINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQI 160


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 102/335 (30%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D VS   L + L +    + A+  L   +     PN       I  LC+  L+ EA
Sbjct: 110 GFQMDHVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEA 169

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +  +S++   G+F    T+ + + G   + +    + L  ++I             LI A
Sbjct: 170 YDLYSEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINA 229

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V E   LL  + ++G+ P    ++ L+  +C         ++ H MV     P+
Sbjct: 230 LCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPN 289

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            ++Y  +INGLCK ++  EA  +  ++  +  VPDTV Y ++I GLCK G +  A  +  
Sbjct: 290 VYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMN 349

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM H+G   +  TY S++   C+  NL++A  L  +M ++G   T  TY  LI GLC  G
Sbjct: 350 EMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGG 409

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R   A  LF+ +  KG   DV TY  +I G CKEG
Sbjct: 410 RLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEG 444



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 160/341 (46%), Gaps = 20/341 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P ++  N +  SL + + +  A+     ++  G   N  +L + I C C  G +  +F 
Sbjct: 7   TPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQMAFSFS 66

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYH------------DLIESGYLI 206
              K+ ++G      T N+ + G C+K +    V K  H            D +  G L+
Sbjct: 67  VLGKILKLGYQPDTITLNTLMKGLCLKGE----VKKSLHFHDKVVAQGFQMDHVSYGTLL 122

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G+     +LLR + +    P    +N +I   C+ K      +L   M AR   
Sbjct: 123 NGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF 182

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +I G C   + + A+ + +++  +   P   +Y  +I+ LCK G + +A+ +
Sbjct: 183 PDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNL 242

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M  +G+ P   TY++++ GYC +  ++ AK++   M+  G      +YN +I GLC 
Sbjct: 243 LAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCK 302

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             R DEA +L  EM  K +  D +TYN+LI G CK G+I +
Sbjct: 303 CKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITS 343



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++ N L   L      K ++ F D   + GF  +  S    +  LC+ G    A
Sbjct: 75  GYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGTLLNGLCKIGETRCA 134

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +++     ++  +N+ + G  K    +  + LY ++   G          LI  
Sbjct: 135 VKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYG 194

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++   + LL +++   + P    +N LI+  C++ N      LL  M      P 
Sbjct: 195 FCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPG 254

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C   +   A ++F+ + + G  P+   Y  +I+GLCK   + +A  +  
Sbjct: 255 VVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLR 314

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+HK ++P+  TYNS+I G C+   +  A  L  EM  +G     VTY +L+  LC + 
Sbjct: 315 EMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQ 374

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             D+A  LF +M ++GI   + TY  LI G CK G++ N
Sbjct: 375 NLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKN 413



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD ++   L            A   LD       +P      + I  LC+ G ++EA
Sbjct: 180 GIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEA 239

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + + G+   + T+++ + G   +       +++H +++ G          +I  
Sbjct: 240 KNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMING 299

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E   LLR++L   +VP+   +N LI   C+         L++ M  R +  D
Sbjct: 300 LCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPAD 359

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK++   +A  +F  +KERG  P    YT +I GLCK G L +A++++ 
Sbjct: 360 VVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQ 419

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ KG   + +TY  MI G C+    +EA  +  +M D G     VT+  +I  L    
Sbjct: 420 HLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKD 479

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A  L  EM  KG+ 
Sbjct: 480 ENDKAEKLLHEMIAKGLL 497



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 128/281 (45%), Gaps = 16/281 (5%)

Query: 101 GFSPDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ + L D    + E +  K     +   G +PN  S  + I  LC+   ++EA
Sbjct: 250 GIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEA 309

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH-----DLIESGYLIQA 208
                ++    +     T+NS + G  K  R     +L+ +++H     D++    L+ A
Sbjct: 310 MNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDA 369

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +  + +   L  ++ E G+ P    +  LI   C+        EL   ++ +    D
Sbjct: 370 LCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCID 429

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I+GLCK     EA  + + +++ G +P+ V +  +I  L +      A K+  
Sbjct: 430 VWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLH 489

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           EMI KGLL  ++    +   + + +N ++A++L  EM+ KG
Sbjct: 490 EMIAKGLLVLDFKVADV---FVQNEN-DKAEKLLHEMIAKG 526



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 84/168 (50%), Gaps = 1/168 (0%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P    + +++  L K ++ L A  +   ++ +G   + V    +I+  C +G 
Sbjct: 1   MLLVRHTPPIIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLGQ 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  +  +  +++  G  P+  T N+++ G C    ++++   H +++ +G+    V+Y T
Sbjct: 61  MAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYGT 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           L+ GLC  G T  A  L   +  +    +V+ YNT+I G CK+ K+VN
Sbjct: 121 LLNGLCKIGETRCAVKLLRMIEDRSTRPNVVMYNTIIDGLCKD-KLVN 167


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 165/372 (44%), Gaps = 27/372 (7%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS- 135
           R  ++ + +  L+ +FF+W  +  GF   + S  ++   L  AR +  A   L     S 
Sbjct: 113 RVLVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSK 172

Query: 136 -----------------PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
                            P     +     L + G++EEA   FSK+K   VF   ++ N 
Sbjct: 173 ADCDVFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNG 232

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDG 229
            L    K+ +TD V + + D+I +G          +I   C +G V     L  ++   G
Sbjct: 233 LLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRG 292

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           LVP+   +N +I  F +             M      PD  TY  +IN  CK  K     
Sbjct: 293 LVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGL 352

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
             + ++K  G  P+ V Y+T++   CK G +  A K + +M   GL+PNEYTY S+I   
Sbjct: 353 EFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAN 412

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+I NL +A RL  EML  G     VTY  LI GLC   R  EA  LF +M   G+  ++
Sbjct: 413 CKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNL 472

Query: 410 ITYNTLIQGYCK 421
            +YN LI G+ K
Sbjct: 473 ASYNALIHGFVK 484



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 171/371 (46%), Gaps = 15/371 (4%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE-ARAFK 123
           +P F   D LF    L     +  +I+ F  +     F P   SCN L     +  +   
Sbjct: 189 VPGFGVFDALF--SVLIDLGMLEEAIQCFSKMKRFRVF-PKTRSCNGLLHRFAKLGKTDD 245

Query: 124 VAMDFLDSTGFSPNPN--SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           V   F D  G    P   +  + I C+C+ G +E A   F ++K  G+     T+NS + 
Sbjct: 246 VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 305

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K+ R D     +          D+I    LI  FC  GK+  G E  R++  +GL P
Sbjct: 306 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 365

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
              +++ L+  FC++    +  +    M      P+ +TY  +I+  CK     +A+R+ 
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 425

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           N++ + G   + V YT +I GLC    + +A +++ +M   G++PN  +YN++IHG+ + 
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 485

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N++ A  L  E+  +G     + Y T I GLC   + + A  +  EM + GI  + + Y
Sbjct: 486 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545

Query: 413 NTLIQGYCKEG 423
            TL+  Y K G
Sbjct: 546 TTLMDAYFKSG 556



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 154/336 (45%), Gaps = 13/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++ N L +   +     + ++F   +   G  PN  S    +   C+ G++++A   
Sbjct: 330 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 389

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           +  ++ +G+  +  T+ S +    KI      ++L +++++ G          LI   C+
Sbjct: 390 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 449

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             ++ E  EL  ++   G++P   ++N LI  F + KN  R  ELL+ +  R   PD   
Sbjct: 450 AERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLL 509

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   I GLC   K   A  V N++KE G   ++++YTT++    K G   +   +  EM 
Sbjct: 510 YGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMK 569

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKGYGETTVTYNTLIAGLCLHGRT 390
              +     T+  +I G C+   + +A      +  D G       +  +I GLC   + 
Sbjct: 570 ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQV 629

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + A  LFE+M QKG+  D   Y +L+ G  K+G ++
Sbjct: 630 EAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVL 665



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 15/344 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           RFF+ +    G  P + + N++ D + +    + A    +     G  P+  +    I  
Sbjct: 248 RFFKDMIGA-GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 306

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESGY-- 204
             + G +++  C F ++K+M     + T+N AL+ C  K  +  +  + Y ++  +G   
Sbjct: 307 FGKVGRLDDTVCFFEEMKDMCCEPDVITYN-ALINCFCKFGKLPIGLEFYREMKGNGLKP 365

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  L+ AFC +G + +  +    +   GLVP    +  LI   C+  N      L 
Sbjct: 366 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 425

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M+      +  TY  +I+GLC + +  EA  +F  +   G +P+   Y  +IHG  K 
Sbjct: 426 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 485

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A ++  E+  +G+ P+   Y + I G C ++ +E AK +  EM + G    ++ Y
Sbjct: 486 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 545

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            TL+      G   E  HL +EM +  I   V+T+  LI G CK
Sbjct: 546 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L     + G + E  +   ++    + P+  + N L+ RF +      V      M+   
Sbjct: 198 LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG 257

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P  FTY  +I+ +CK      A  +F ++K RG VPDTV Y ++I G  K+G L D  
Sbjct: 258 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 317

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             + EM      P+  TYN++I+ +C+   L      ++EM   G     V+Y+TL+   
Sbjct: 318 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G   +A   + +M + G+  +  TY +LI   CK G +
Sbjct: 378 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNL 418



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 167/365 (45%), Gaps = 21/365 (5%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLD 130
           F +E + QQ     +I+F+  +    G  P+  +   L D+  +    + AF++  + L 
Sbjct: 377 FCKEGMMQQ-----AIKFYVDMR-RVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML- 429

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
             G   N  +    I  LC++  ++EA   F K+   GV  ++ ++N+ + G +K    D
Sbjct: 430 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 489

Query: 191 LVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L +         DL+  G  I   C+  K+     ++ ++ E G+   +  +  L+
Sbjct: 490 RALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLM 549

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK-ERGY 300
             + +  N      LL  M   +      T+  +I+GLCK++   +A   FN +  + G 
Sbjct: 550 DAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGL 609

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
             +  ++T +I GLCK   +  A  ++ +M+ KGL+P+   Y S++ G  +  N+ EA  
Sbjct: 610 QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALA 669

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  +M + G     + Y +L+ GL    +  +A    EEM  +GI  D +   ++++ + 
Sbjct: 670 LRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHY 729

Query: 421 KEGKI 425
           + G I
Sbjct: 730 ELGCI 734



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 114/279 (40%), Gaps = 13/279 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L S N L    V+A+    A++ L+     G  P+      +I  LC    IE A
Sbjct: 467 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 526

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++KE G+  +   + + +    K         L  ++ E            LI  
Sbjct: 527 KVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 586

Query: 209 FCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            C +  VS+  +   ++  D GL      F  +I   C+       + L   MV +   P
Sbjct: 587 LCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 646

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +++G  K    LEA  + + + E G   D + YT+++ GL     L  AR   
Sbjct: 647 DRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFL 706

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
            EMI +G+ P+E    S++  +  +  ++EA  L   ++
Sbjct: 707 EEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLM 745



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%)

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           VP   ++  +   L  +G L +A + + +M    + P   + N ++H + ++   ++ KR
Sbjct: 189 VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 248

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             K+M+  G   T  TYN +I  +C  G  + A  LFEEM  +G+  D +TYN++I G+ 
Sbjct: 249 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFG 308

Query: 421 KEGKI 425
           K G++
Sbjct: 309 KVGRL 313


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 178/374 (47%), Gaps = 47/374 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N + D L +A+A   A   L      G  P+  +    I  LC++  ++ A
Sbjct: 264 GVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRA 323

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK-------IDRTDLVWK--LYHDLIESGYLIQA 208
                 + +  V   I+T+N  + G +        + R + ++   L  D++    L+  
Sbjct: 324 DGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDY 383

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK +E  ++   ++  G+ P  T +  L+  +  +     +++LL  MVA   +P+
Sbjct: 384 LCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPN 443

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N+ +  V+    K     EA  +F+ + + G  PD V Y  +I  LCK+G + DA   + 
Sbjct: 444 NYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFN 503

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY-----------------G 371
           +MI+ G+ PN   +NS+++G C +D  E+A+ L  EM D+G                  G
Sbjct: 504 QMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEG 563

Query: 372 ETTV------------------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +  V                  +YNTLI G CL GRTDEA  L + M   G+  D+I+Y+
Sbjct: 564 QVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYD 623

Query: 414 TLIQGYCKEGKIVN 427
           TL++GYCK G+I N
Sbjct: 624 TLLRGYCKTGRIDN 637



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 157/341 (46%), Gaps = 15/341 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTG-FSPNPNSLELYIQCLCESGL 153
           +G  P++VSCN L   L   +  + A++ L     D  G  +PN  +    I  LC++  
Sbjct: 155 FGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIIDGLCKAQA 214

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           ++ A      + + GV   + T+++ + G  K    D    +   +I+ G          
Sbjct: 215 VDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNT 274

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C    V     +L+ +++ G+ P+   +N +I   C+ +   R   +L  M+ ++
Sbjct: 275 IIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKD 334

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +I+G   + +  E  R   ++  RG  PD V Y+ ++  LCK G   +AR
Sbjct: 335 VKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKNGKCTEAR 394

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+++ MI KG+ PN   Y  ++HGY     + +   L   M+  G       +N ++   
Sbjct: 395 KIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAY 454

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 DEA H+F  M+Q G+  DV+TY  LI   CK G++
Sbjct: 455 AKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRV 495



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 16/340 (4%)

Query: 104 PDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF-C 159
           PDL + ++L   F  L        A   +  TG+  N   +   +  LC++  ++EA   
Sbjct: 88  PDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEAMDI 147

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------------YLIQ 207
              ++ E G   ++ + N+ L G     R +   +L H + E G             +I 
Sbjct: 148 LLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNTIID 207

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C    V     +L+ +++ G+  +   ++ +I   C+ +   R   +L  M+ +   P
Sbjct: 208 GLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKGVKP 267

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+GLCK++    A  V   + ++G  PD V Y T+I GLCK   +  A  + 
Sbjct: 268 DVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRADGVL 327

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI K + P+  TYN +IHGY      +E  R  +EM  +G     VTY+ L+  LC +
Sbjct: 328 QHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYSLLLDYLCKN 387

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G+  EA  +F  M +KGI  +V  Y  L+ GY   G I +
Sbjct: 388 GKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIAD 427



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 166/339 (48%), Gaps = 20/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD-------FLDSTGFSPNPNSLELYIQCLCESGL 153
           G SP+    N +F+ ++ A A K  +D        +   G SP+  +  + I  LC+ G 
Sbjct: 439 GISPN----NYIFNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGR 494

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           +++A   F+++   GV  +   +NS + G   +DR +   +L+ ++ + G          
Sbjct: 495 VDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNT 554

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++   CN+G+V     L+  +   G+ P   ++N LI   C        ++LL  MV+  
Sbjct: 555 IMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVG 614

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  +Y+ ++ G CK+ +   AY +F ++  +G  P  V Y+T++ GL       +A+
Sbjct: 615 LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAK 674

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++  MI  G   + YTYN +++G C+ + ++EA ++ + +  K      +T+  +I  L
Sbjct: 675 ELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVL 734

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              GR  +A  LF  +   G+  +V+TY  +++   +EG
Sbjct: 735 FKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEG 773



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 144/324 (44%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++    +L        A     D LD   + G SPN     + +    +  +I+EA
Sbjct: 404 GIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIVLCAYAKKAMIDEA 463

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FS++ + G                          L  D++  G LI A C  G+V +
Sbjct: 464 MHIFSRMSQHG--------------------------LSPDVVTYGILIDALCKLGRVDD 497

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                 Q++ DG+ P +  FN L+   C    + +  EL   M  +   P+   +  ++ 
Sbjct: 498 AVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMC 557

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LC   + + A R+ + ++  G  P+ + Y T+I G C  G   +A ++   M+  GL P
Sbjct: 558 NLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKP 617

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  +Y++++ GYC+   ++ A  L +EML KG     VTY+T++ GL    R  EA  L+
Sbjct: 618 DLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELY 677

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
             M + G   D+ TYN ++ G CK
Sbjct: 678 LNMIKSGQQWDIYTYNIILNGLCK 701



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 123/270 (45%), Gaps = 39/270 (14%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYE--------------------------------- 220
           K+  DL     L   FC  G++  G+                                  
Sbjct: 85  KVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGWRVNEVVINQLLNGLCDAKRVDEA 144

Query: 221 ---LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV---ARNRAPDNFTYEE 274
              LLR++ E G +P   + N L+   C +K      ELLHTM      N  P+  TY  
Sbjct: 145 MDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNT 204

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+GLCK++    A  V   + ++G   D V Y+T+I GLCK   +  A  +   MI KG
Sbjct: 205 IIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKG 264

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P+  TYN++I G C+   ++ A+ + + M+DKG     VTYNT+I GLC     D A 
Sbjct: 265 VKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAD 324

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            + + M  K +  D+ TYN LI GY   G+
Sbjct: 325 GVLQHMIDKDVKPDIQTYNCLIHGYLSTGE 354



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 156/372 (41%), Gaps = 47/372 (12%)

Query: 98  SHYGFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNP---NSL---------- 141
           S +G SPD+V+  +L D+L +  R     + F  + + G +PN    NSL          
Sbjct: 471 SQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRW 530

Query: 142 ----ELY-----------------IQC-LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
               EL+                 I C LC  G +  A      ++ +GV  ++ ++N+ 
Sbjct: 531 EKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTL 590

Query: 180 LLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230
           + G     RTD   +L           DLI    L++ +C  G++   Y L R++L  G+
Sbjct: 591 IGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGV 650

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            P    ++ ++      + F    EL   M+   +  D +TY  ++NGLCK+    EA++
Sbjct: 651 TPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFK 710

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F  L  +   P+ + +T +I  L K G   DA  ++  +   GL+PN  TY  M+    
Sbjct: 711 IFQSLCSKDLRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNII 770

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   L+E   L   M   G    +V  N +I  L   G    A     ++ +     +  
Sbjct: 771 QEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGAYLSKIDEMNFSLEAS 830

Query: 411 TYNTLIQGYCKE 422
           T + LI  + +E
Sbjct: 831 TTSLLISLFSRE 842


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 109/374 (29%), Positives = 172/374 (45%), Gaps = 50/374 (13%)

Query: 99   HYGFSPDLVSCNVLFDSLVE-----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
            +YG    + SCNV    L +     A A  V  +F +  G   N  S  + I  +C+ G 
Sbjct: 646  NYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPE-VGVCWNVASYNIVIHFVCQLGR 704

Query: 154  IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            I+EA      ++  G    + ++++ + G  +    D VWKL   +   G          
Sbjct: 705  IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 764

Query: 205  LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE--------- 255
            +I   C   K++E  E   +++  G++P+   +  LI  FC++ +    S+         
Sbjct: 765  IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 824

Query: 256  --------------------------LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
                                      L H M  +   PD+ T+ E+ING CK+    +A+
Sbjct: 825  ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 884

Query: 290  RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            RV N + + G  P+ V YTT+I GLCK G L  A ++  EM   GL PN +TYNS+++G 
Sbjct: 885  RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 944

Query: 350  CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            C+  N+EEA +L  E    G    TVTY TL+   C  G  D+A  + +EM  KG+   +
Sbjct: 945  CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 1004

Query: 410  ITYNTLIQGYCKEG 423
            +T+N L+ G+C  G
Sbjct: 1005 VTFNVLMNGFCLHG 1018



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 133  GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
            G  P+       I   C+ G I  A   F ++    +   + T+ + + G  +I      
Sbjct: 789  GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 848

Query: 193  WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             KL+H++   G          LI  +C  G + + + +   +++ G  P    +  LI  
Sbjct: 849  GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 908

Query: 244  FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             C++ +    +ELLH M      P+ FTY  ++NGLCKS    EA ++  + +  G   D
Sbjct: 909  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968

Query: 304  TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            TV YTT++   CK G +  A+++  EM+ KGL P   T+N +++G+C    LE+ ++L  
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1028

Query: 364  EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             ML KG      T+N+L+   C+      A  ++++M  +G+  D  TY  L++G+CK
Sbjct: 1029 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCK 1086



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 12/338 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  PD V    L D   +    + A  F   + S   +P+  +    I   C+ G + EA
Sbjct: 789  GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 848

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               F ++   G+     T+   + G  K       +++++ +I++G          LI  
Sbjct: 849  GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 908

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             C +G +    ELL ++ + GL P    +N +++  C+  N     +L+    A     D
Sbjct: 909  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 968

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +++  CKS +  +A  +  ++  +G  P  V +  +++G C  G L D  K+  
Sbjct: 969  TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1028

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M+ KG+ PN  T+NS++  YC  +NL+ A  ++K+M  +G G    TY  L+ G C   
Sbjct: 1029 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 1088

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               EA+ LF+EM  KG    V TY+ LI+G+ K  K +
Sbjct: 1089 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 1126



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/371 (24%), Positives = 160/371 (43%), Gaps = 51/371 (13%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP-- 136
            +K + +  L + FF W  S      +L S  ++    V ++  KVA   + S    P  
Sbjct: 537 LMKIKCDYRLVLDFFDWARSRR--DSNLESLCIVIHLAVASKDLKVAQSLISSFWERPKL 594

Query: 137 ----------------------NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
                                 +P   +++ Q L + GL+ EA   F K+   G+  S+ 
Sbjct: 595 NVTDSFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVDFGLLREARRVFEKMLNYGLVLSVD 654

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           + N  L             +L  D  ++   I  F             R+  E G+    
Sbjct: 655 SCNVYLT------------RLSKDCYKTATAIIVF-------------REFPEVGVCWNV 689

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            ++N +I   C+         LL  M  +   PD  +Y  V+NG C+  +  + +++   
Sbjct: 690 ASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEV 749

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +K +G  P++ +Y ++I  LC++  L +A + + EMI +G+LP+   Y ++I G+C+  +
Sbjct: 750 MKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGD 809

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +  A +   EM  +      +TY  +I+G C  G   EA  LF EM  KG+  D +T+  
Sbjct: 810 IRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTE 869

Query: 415 LIQGYCKEGKI 425
           LI GYCK G +
Sbjct: 870 LINGYCKAGHM 880



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 70/339 (20%), Positives = 154/339 (45%), Gaps = 13/339 (3%)

Query: 82   QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
            ++ ++  + +FF  +HS    +PD+++   +     +      A          G  P+ 
Sbjct: 806  KRGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS 864

Query: 139  NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
             +    I   C++G +++AF   + + + G   ++ T+ + + G  K    D   +L H+
Sbjct: 865  VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHE 924

Query: 199  LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
            + + G          ++   C  G + E  +L+ +    GL  +   +  L+  +C+   
Sbjct: 925  MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 984

Query: 250  FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
              +  E+L  M+ +   P   T+  ++NG C      +  ++ N +  +G  P+   + +
Sbjct: 985  MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNS 1044

Query: 310  VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            ++   C    L  A  ++ +M  +G+ P+  TY +++ G+C+  N++EA  L +EM  KG
Sbjct: 1045 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 1104

Query: 370  YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            +  +  TY+ LI G     +  EA  +F++M ++G+  D
Sbjct: 1105 FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 1143



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 110/225 (48%), Gaps = 9/225 (4%)

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF---CEKKNFGRV--SELLHTMV 261
           Q   + G + E   +  ++L  GLV    + N  ++R    C K     +   E     V
Sbjct: 626 QVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPEVGV 685

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
             N A    +Y  VI+ +C+  +  EA+ +   ++ +GY PD + Y+TV++G C+ G L 
Sbjct: 686 CWNVA----SYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELD 741

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
              K+   M  KGL PN Y Y S+I   CRI  L EA+    EM+ +G    TV Y TLI
Sbjct: 742 KVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLI 801

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            G C  G    A   F EM  + I  DV+TY  +I G+C+ G +V
Sbjct: 802 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV 846



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 15/263 (5%)

Query: 96   LHSHY---GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
            +H+H    G SP++V+   L D L +      A + L      G  PN  +    +  LC
Sbjct: 886  VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 945

Query: 150  ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
            +SG IEEA     + +  G+     T+ + +    K    D   ++  +++  G      
Sbjct: 946  KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 1005

Query: 204  ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
                L+  FC  G + +G +LL  +L  G+ P  T FN L+ ++C + N    + +   M
Sbjct: 1006 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 1065

Query: 261  VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             +R   PD  TYE ++ G CK+R   EA+ +F ++K +G+      Y+ +I G  K    
Sbjct: 1066 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 1125

Query: 321  GDARKMWFEMIHKGLLPNEYTYN 343
             +AR+++ +M  +GL  ++  ++
Sbjct: 1126 LEAREVFDQMRREGLAADKEIFD 1148


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 166/337 (49%), Gaps = 12/337 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
            G+ P++V+ + L +    ++    A+  +D    TG+ PN  +    I  L       EA
Sbjct: 760  GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 819

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGYLI-----QA 208
                 ++   G    + T+   + G  K   TDL + L + +    +E G LI       
Sbjct: 820  MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 879

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             C    + +   L +++   G+ P    ++ LIS  C    +   S LL  M+ R   PD
Sbjct: 880  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 939

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             FT+  +I+   K  K +EA ++++++ +R   P  V Y+++I+G C    L +A++M+ 
Sbjct: 940  VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 999

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M+ K   P+  TYN++I G+C+   +EE   + +EM  +G    TVTYN LI GL   G
Sbjct: 1000 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 1059

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              D A  +F+EM   G+  +++TYNTL+ G CK GK+
Sbjct: 1060 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 1096



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 147/281 (52%), Gaps = 9/281 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           + +A   FS + +   F SI  +N  L   +K+ + D+V  L          +DL     
Sbjct: 169 LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 228

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I  FC   +VS    +L ++L+ G  P+      L++ FC +        L+  MV   
Sbjct: 229 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 288

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD   Y  +I+ LCK+++  +A+  F +++ +G  P+ V YT +++GLC      DA 
Sbjct: 289 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 348

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +MI K + PN  TY++++  + +   + EAK L +EM+        VTY++LI GL
Sbjct: 349 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 408

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           CLH R DEA  +F+ M  KG   DV++YNTLI G+CK  ++
Sbjct: 409 CLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 449



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 170/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+   L +          A+  +D     G+ P+  +    I  LC++  + +A
Sbjct: 253 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 312

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
           F  F +++  G+  ++ T+ + + G     R     +L  D+I+            L+ A
Sbjct: 313 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 372

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GKV E  EL  +++   + P+   ++ LI+  C        +++   MV++    D
Sbjct: 373 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 432

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK+++  +  ++F ++ +RG V +TV Y T+I G  + G +  A++ + 
Sbjct: 433 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 492

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+ P+ +TYN ++ G C    LE+A  + ++M  +      VTY T+I G+C  G
Sbjct: 493 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 552

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + +EA+ LF  ++ KG+  D++TY T++ G C +G
Sbjct: 553 KVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 587



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 175/337 (51%), Gaps = 16/337 (4%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
            G  PDLV+  V+ + L +     +A + L+        P        I  LC+   +++A
Sbjct: 830  GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 889

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
               F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 890  LNLFKEMETKGIRPNVVTY-SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 948

Query: 208  AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            AF  +GK+ E  +L  ++++  + P    ++ LI+ FC         ++   MV+++  P
Sbjct: 949  AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 1008

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            D  TY  +I G CK ++  E   VF ++ +RG V +TV Y  +I GL + G    A++++
Sbjct: 1009 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 1068

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTLIAGLCL 386
             EM+  G+ PN  TYN+++ G C+   LE+A  +  E L +   E T+ TYN +I G+C 
Sbjct: 1069 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVF-EYLQRSKMEPTIYTYNIMIEGMCK 1127

Query: 387  HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             G+ ++ + LF  ++ KG+  DV+ YNT+I G+C++G
Sbjct: 1128 AGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKG 1164



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  N L  ++V+ + + V +     ++  G   +  +  + I C C    +  A   
Sbjct: 186 PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 245

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G      T  S + G  + +R      L   ++E GY         +I + C 
Sbjct: 246 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 305

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V++ ++  +++   G+ P    +  L++  C    +   + LL  M+ +   P+  T
Sbjct: 306 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 365

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++   K+ K LEA  +F ++      PD V Y+++I+GLC    + +A +M+  M+
Sbjct: 366 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 425

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG L +  +YN++I+G+C+   +E+  +L +EM  +G    TVTYNTLI G    G  D
Sbjct: 426 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 485

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A   F +M   GI  D+ TYN L+ G C  G++
Sbjct: 486 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 519



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
            G+ P+ V+ N L   L        AM  +D   + G  P+  +  + +  LC+ G  + A
Sbjct: 795  GYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 854

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
            F   +K+++  +   +  +N+ + G  K    D    L+ ++   G          LI  
Sbjct: 855  FNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISC 914

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             CN G+ S+   LL  ++E  + P+   F+ LI  F ++       +L   MV R+  P 
Sbjct: 915  LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 974

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +ING C   +  EA ++F  +  +   PD V Y T+I G CK   + +  +++ 
Sbjct: 975  IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFR 1034

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            EM  +GL+ N  TYN +I G  +  + + A+ + KEM+  G     +TYNTL+ GLC +G
Sbjct: 1035 EMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 1094

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + ++A  +FE + +  +   + TYN +I+G CK GK+
Sbjct: 1095 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 1131



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   DL + N++ +         +A+  L      G+ P+  ++   +   C    + +A
Sbjct: 218 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 277

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+ E+G    I  +N+ +    K  R +  +  + ++   G          L+  
Sbjct: 278 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 337

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  + S+   LL  +++  + P    ++ L+  F +        EL   MV  +  PD
Sbjct: 338 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 397

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGLC   +  EA ++F+ +  +G + D V Y T+I+G CK   + D  K++ 
Sbjct: 398 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 457

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TYN++I G+ +  ++++A+    +M   G      TYN L+ GLC +G
Sbjct: 458 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 517

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A  +FE+M ++ +  D++TY T+I+G CK GK+
Sbjct: 518 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 554



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 137/282 (48%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           +++A   F ++ +   F SI  ++  L    K+++ D+V  L   +   G          
Sbjct: 676 LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 735

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   ++     +L ++++ G  P     + L++ +C  K       L+  M    
Sbjct: 736 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 795

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  T+  +I+GL    K  EA  + + +  +G  PD V Y  V++GLCK G    A 
Sbjct: 796 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 855

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    L P    YN++I G C+  ++++A  L KEM  KG     VTY++LI+ L
Sbjct: 856 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 915

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L  +M ++ I  DV T++ LI  + KEGK+V
Sbjct: 916 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLV 957



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 162/350 (46%), Gaps = 16/350 (4%)

Query: 89   SIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELY 144
            ++  F+ + +  G  P++V+ + L   L      + A ++  D ++    +P+  +    
Sbjct: 889  ALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INPDVFTFSAL 946

Query: 145  IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------- 197
            I    + G + EA   + ++ +  +  SI T++S + G    DR D   +++        
Sbjct: 947  IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 1006

Query: 198  --DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
              D++    LI+ FC   +V EG E+ R++ + GLV     +N LI    +  +     E
Sbjct: 1007 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 1066

Query: 256  LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
            +   MV+    P+  TY  +++GLCK+ K  +A  VF  L+     P    Y  +I G+C
Sbjct: 1067 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 1126

Query: 316  KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            K G + D   ++  +  KG+ P+   YN+MI G+CR  + EEA  L KEM + G    + 
Sbjct: 1127 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 1186

Query: 376  TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             YNTLI      G  + +  L +EM   G   D  T   L+     +G++
Sbjct: 1187 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRL 1235



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 140/316 (44%), Gaps = 47/316 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCES------ 151
           G+ PD+V+ N + DSL + +    A DF   ++  G  PN  +    +  LC S      
Sbjct: 288 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 347

Query: 152 -----------------------------GLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
                                        G + EA   F ++  M +   I T++S + G
Sbjct: 348 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 407

Query: 183 CIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
               DR D   +++          D++    LI  FC   +V +G +L R++ + GLV  
Sbjct: 408 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 467

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N LI  F +  +  +  E    M     +PD +TY  ++ GLC + +  +A  +F 
Sbjct: 468 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 527

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+++R    D V YTTVI G+CK G + +A  ++  +  KGL P+  TY +M+ G C   
Sbjct: 528 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 587

Query: 354 NLEEAKRLHKEMLDKG 369
            L E + L+ +M  +G
Sbjct: 588 LLHEVEALYTKMKQEG 603



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 104/423 (24%), Positives = 180/423 (42%), Gaps = 48/423 (11%)

Query: 40  YTEIAKQVCKITRT-------KPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           Y  +    CK  R        +   ++ L+S+  ++N     FF     Q  +V  +  F
Sbjct: 436 YNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFF-----QAGDVDKAQEF 490

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLC 149
           F  +   +G SPD+ + N+L   L +    + A+   +          +  Y   I+ +C
Sbjct: 491 FSQM-DFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMC 549

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           ++G +EEA+  F  L   G+   I T+ + + G         V  LY  + + G L++  
Sbjct: 550 KTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG-LMKND 608

Query: 210 C--NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK-----KNF-GRVS------- 254
           C  +DG ++   EL++++L  G  P  +    + S  C+K     + F G+ S       
Sbjct: 609 CTLSDGDITLSAELIKKMLSCGYAP--SLLKDIKSGVCKKALSLLRAFSGKTSYDYREKL 666

Query: 255 --------------ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
                          L   MV     P    + ++++ + K  K      +   ++  G 
Sbjct: 667 SRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI 726

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
             +   Y+ +I+  C+   L  A  +  +M+  G  PN  T +S+++GYC    + EA  
Sbjct: 727 PHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVA 786

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  +M   GY   TVT+NTLI GL LH +  EA  L + M  KG   D++TY  ++ G C
Sbjct: 787 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 846

Query: 421 KEG 423
           K G
Sbjct: 847 KRG 849



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K+++  +L   +++    P    FN+L+S   + K +  V  L   M       D +T
Sbjct: 166 DIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 225

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  VIN  C   +   A  +   + + GY PD V   ++++G C+   + DA  +  +M+
Sbjct: 226 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 285

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+   YN++I   C+   + +A    KE+  KG     VTY  L+ GLC   R  
Sbjct: 286 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 345

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +A  L  +M +K I  +VITY+ L+  + K GK++
Sbjct: 346 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVL 380


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 11/338 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  G  PD+V+   L   L        A+D        P+  +    +  LC  G + EA
Sbjct: 143 TKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-CRPDVLTFTTLMNGLCREGRVVEA 201

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
                ++ E G+     T+ + + G  K+  T     L   + E  ++          I 
Sbjct: 202 VALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C DG+ S+ + L  ++ + G+ P    +N +I  FC    +     LL  M+ R  +P
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISP 321

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +IN   K  K  EA  +++++  RG +P+T+ Y ++I G CK   L  A  M+
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           + M  KG  P+ +T+ ++I GYC    +++   L  EM  +G    TVTYNTLI G CL 
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + A  L ++M   G+  D++T NTL+ G C  GK+
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N +      +  +  A   L        SPN  +    I    + G   EA
Sbjct: 283 GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEA 342

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              + ++   G+  +  T+NS + G  K DR D    +++ +   G          LI  
Sbjct: 343 AELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 402

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++   GLV     +N LI  FC   +     +L   M++    PD
Sbjct: 403 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER-----------GYVPDTVMYTTVIHGLCKM 317
             T   +++GLC + K  +A  +F  +++            G  PD + Y  +I GL   
Sbjct: 463 IVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINE 522

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +    VT+
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 582

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NTLI G C  GR D+   LF EM ++GI  D I Y TLI G+ K G I
Sbjct: 583 NTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNI 630



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-- 197
           S  + I+C C    +  A   F KL ++G+   + T+ + L G     R      L+H  
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
              D++    L+   C +G+V E   LL +++E+GL P+   +   +   C+  +     
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 255 ELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            LL  M   +   P+   Y  +I+GLCK  +  +++ +F +++++G  P+ V Y  +I G
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            C  G    A+++  EM+ + + PN  TYN++I+ + +     EA  L+ EML +G    
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T+TYN++I G C   R D A  +F  MA KG   DV T+ TLI GYC   +I
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRI 409



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 158/341 (46%), Gaps = 41/341 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD ++     D + +      A++ L    + +   PN       I  LC+ G   +
Sbjct: 212 GLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSD 271

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           +   F ++++ G+F +I T+N                           +I  FC  G+ S
Sbjct: 272 SHNLFIEMQDKGIFPNIVTYNC--------------------------MIGGFCISGRWS 305

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
               LL+++LE  + P    +N LI+ F ++  F   +EL   M+ R   P+  TY  +I
Sbjct: 306 AAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G CK  +   A  +F  +  +G  PD   +TT+I G C    + D  ++  EM  +GL+
Sbjct: 366 DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            N  TYN++IHG+C + +L  A  L ++M+  G     VT NTL+ GLC +G+  +A  +
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEM 485

Query: 397 FEEMAQK-----------GIFRDVITYNTLIQGYCKEGKIV 426
           F+ M +            G+  DV+TYN LI G   EGK +
Sbjct: 486 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFL 526



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 142/317 (44%), Gaps = 49/317 (15%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------------- 197
           +E+A   FS +       S+  +N  +   ++++R DLV  LY                 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 198 ----------------------------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
                                       D++    L+   C D +VSE  +L  Q+    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             P+   F  L++  C +        LL  MV     PD  TY   ++G+CK    + A 
Sbjct: 180 --PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 290 RVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +   ++E  ++ P+ V+Y+ +I GLCK G   D+  ++ EM  KG+ PN  TYN MI G
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C       A+RL +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 409 VITYNTLIQGYCKEGKI 425
            ITYN++I G+CK+ ++
Sbjct: 358 TITYNSMIDGFCKQDRL 374



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 23/341 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SP++V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G    + T+ + + G     R D   +L H++   G          LI  F
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
           C  G ++   +L +Q++  G+ P+    N L+   C+        E+   M         
Sbjct: 439 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 498

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 499 SHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+N++I+GYC+   +++   L  EM  +G     + Y 
Sbjct: 559 RLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYI 618

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           TLI G    G  + A  +F+EM   G++ D IT   ++ G+
Sbjct: 619 TLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 145/323 (44%), Gaps = 23/323 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ N + D   +      A D    + + G SP+  +    I   C +  I++ 
Sbjct: 353 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDG 412

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G+  +  T+N+ + G   +   +    L   +I SG          L+  
Sbjct: 413 MELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 472

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LI     +  F    EL 
Sbjct: 473 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELY 532

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F  +  + + P+ V + T+I+G CK 
Sbjct: 533 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 592

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ +   Y ++I+G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 593 GRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 652

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
             ++ G       + A  + E++
Sbjct: 653 RNMLTGFWSKEELERAVAMLEDL 675



 Score = 72.0 bits (175), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S   E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 51  KLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERK 110

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +T +I   C    L  A   + ++   GL P+  T+ +++HG C    + EA
Sbjct: 111 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEA 170

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  ++         +T+ TL+ GLC  GR  EA  L + M + G+  D ITY T + G
Sbjct: 171 LDLFHQICRP----DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDG 226

Query: 419 YCKEGKIVN 427
            CK G  V+
Sbjct: 227 MCKMGDTVS 235



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 89/219 (40%), Gaps = 23/219 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----------LDST----GFSPNPNSLELYIQ 146
           G  PD+V+CN L D L +    K A++           LD++    G  P+  +  + I 
Sbjct: 458 GVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILIC 517

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            L   G   EA   + ++   G+     T++S + G  K  R D   +++  +    +  
Sbjct: 518 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSP 577

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI  +C  G+V +G EL  ++   G+V +   +  LI  F +  N     ++ 
Sbjct: 578 NVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIF 637

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M++    PD  T   ++ G     +   A  +  DL+
Sbjct: 638 QEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQ 676


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 167/337 (49%), Gaps = 12/337 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +GFSP++V    L D   +    + A D    +   G   N  +  + I  L ++G+ ++
Sbjct: 192 FGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQ 251

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F  + K++E GVF ++ T+N  +    K  RT   +K++ ++ E G          LI 
Sbjct: 252 GFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIG 311

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C + K +E  E++ Q+  DG+ P    +N LI  FC  +  G+   L   + +R  +P
Sbjct: 312 GLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSP 371

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +++G CK      A +V  +++ERG  P  V YT +I    +   +  A ++ 
Sbjct: 372 SLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLR 431

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   GL P+ +TY+ +IHG+C    + EA RL K M++K +    V YNT++ G C  
Sbjct: 432 SSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKE 491

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G +  A  LF EM +K +  +V +Y  +I+  CKE K
Sbjct: 492 GSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERK 528



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/320 (30%), Positives = 154/320 (48%), Gaps = 19/320 (5%)

Query: 113 FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
           FD LVE R F          GFSPN       I   C+ G IE+A   F ++ + G+  +
Sbjct: 183 FDLLVELREF----------GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVAN 232

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
             T+   + G  K       +++Y  + E G          ++   C DG+  + +++  
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFD 292

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++ E G+      +N LI   C +      +E++  M +    P+  TY  +I+G C  R
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVR 352

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K  +A  +  DLK RG  P  V Y  ++ G CK G    A K+  EM  +G+ P++ TY 
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYT 412

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            +I  + R DN+E+A +L   M + G      TY+ LI G C+ GR +EA  LF+ M +K
Sbjct: 413 ILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEK 472

Query: 404 GIFRDVITYNTLIQGYCKEG 423
               + + YNT++ GYCKEG
Sbjct: 473 KFEPNEVIYNTMVLGYCKEG 492



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/290 (26%), Positives = 140/290 (48%), Gaps = 8/290 (2%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW-------- 193
           E+ I    +S  ++ +   F+++ + G       +N+ L   +     +  W        
Sbjct: 98  EVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKI 157

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           K+  D+   G +I+  C  G++ + ++LL ++ E G  P    +  LI   C+K    + 
Sbjct: 158 KVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +L   M       + +TY  +I+GL K+  + + + ++  ++E G  P+   Y  V++ 
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQ 277

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G   DA K++ EM  +G+  N  TYN++I G CR     EA  +  +M   G    
Sbjct: 278 LCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPN 337

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +TYNTLI G C   +  +A  L  ++  +G+   ++TYN L+ G+CK+G
Sbjct: 338 LITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKG 387



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 123/220 (55%), Gaps = 1/220 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I A+     +        ++++ G VP +  FN L++      +F +     +    + 
Sbjct: 100 IINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIK- 158

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D +++  VI G C++ +  +++ +  +L+E G+ P+ V+YTT+I G CK G +  A+
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++FEM   GL+ NE+TY  +IHG  +    ++   ++++M + G      TYN ++  L
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQL 278

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           C  GRT +A+ +F+EM ++G+  +++TYNTLI G C+E K
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK 318



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 142/319 (44%), Gaps = 20/319 (6%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLD 130
            F+  +K+Q         ++ +  H G  P+L + N + + L +      AFKV  D + 
Sbjct: 243 LFKNGIKKQG-----FEMYEKMQEH-GVFPNLHTYNCVMNQLCKDGRTKDAFKV-FDEMR 295

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
             G S N  +    I  LC      EA     ++K  G+  ++ T+N+ + G   + +  
Sbjct: 296 ERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLG 355

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
               L  DL   G          L+  FC  G  S   ++++++ E G+ P    +  LI
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILI 415

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             F    N  +  +L  +M      PD  TY  +I+G C   +  EA R+F  + E+ + 
Sbjct: 416 DTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSMVEKKFE 475

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+ V+Y T++ G CK G    A +++ EM  K L PN  +Y  MI   C+    +EA+ L
Sbjct: 476 PNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGL 535

Query: 362 HKEMLDKGYGETTVTYNTL 380
            ++M+D G G +    N +
Sbjct: 536 VEKMIDSGIGPSDSILNLI 554


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 11/338 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  G  PD+V+   L   L        A+D        P+  +    +  LC  G + EA
Sbjct: 143 TKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI-CRPDVLTFTTLMNGLCREGRVVEA 201

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
                ++ E G+     T+ + + G  K+  T     L   + E  ++          I 
Sbjct: 202 VALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIID 261

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C DG+ S+ + L  ++ + G+ P    +N +I  FC    +     LL  M+ R  +P
Sbjct: 262 GLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISP 321

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +IN   K  K  EA  +++++  RG +P+T+ Y ++I G CK   L  A  M+
Sbjct: 322 NVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMF 381

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           + M  KG  P+ +T+ ++I GYC    +++   L  EM  +G    TVTYNTLI G CL 
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + A  L ++M   G+  D++T NTL+ G C  GK+
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 479



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 162/348 (46%), Gaps = 23/348 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N +      +  +  A   L        SPN  +    I    + G   EA
Sbjct: 283 GIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEA 342

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              + ++   G+  +  T+NS + G  K DR D    +++ +   G          LI  
Sbjct: 343 AELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 402

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G ELL ++   GLV     +N LI  FC   +     +L   M++    PD
Sbjct: 403 YCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPD 462

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER-----------GYVPDTVMYTTVIHGLCKM 317
             T   +++GLC + K  +A  +F  +++            G  PD + Y  +I GL   
Sbjct: 463 IVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINE 522

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +    VT+
Sbjct: 523 GKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTF 582

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NTLI G C  GR D+   LF EM ++GI  D I Y TLI G+ K G I
Sbjct: 583 NTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNI 630



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-- 197
           S  + I+C C    +  A   F KL ++G+   + T+ + L G     R      L+H  
Sbjct: 118 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI 177

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
              D++    L+   C +G+V E   LL +++E+GL P+   +   +   C+  +     
Sbjct: 178 CRPDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 255 ELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            LL  M   +   P+   Y  +I+GLCK  +  +++ +F +++++G  P+ V Y  +I G
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            C  G    A+++  EM+ + + PN  TYN++I+ + +     EA  L+ EML +G    
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T+TYN++I G C   R D A  +F  MA KG   DV T+ TLI GYC   +I
Sbjct: 358 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRI 409



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 158/341 (46%), Gaps = 41/341 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD ++     D + +      A++ L    + +   PN       I  LC+ G   +
Sbjct: 212 GLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSD 271

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           +   F ++++ G+F +I T+N                           +I  FC  G+ S
Sbjct: 272 SHNLFIEMQDKGIFPNIVTYNC--------------------------MIGGFCISGRWS 305

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
               LL+++LE  + P    +N LI+ F ++  F   +EL   M+ R   P+  TY  +I
Sbjct: 306 AAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMI 365

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G CK  +   A  +F  +  +G  PD   +TT+I G C    + D  ++  EM  +GL+
Sbjct: 366 DGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLV 425

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            N  TYN++IHG+C + +L  A  L ++M+  G     VT NTL+ GLC +G+  +A  +
Sbjct: 426 ANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEM 485

Query: 397 FEEMAQK-----------GIFRDVITYNTLIQGYCKEGKIV 426
           F+ M +            G+  DV+TYN LI G   EGK +
Sbjct: 486 FKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFL 526



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 142/317 (44%), Gaps = 49/317 (15%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------------- 197
           +E+A   FS +       S+  +N  +   ++++R DLV  LY                 
Sbjct: 62  LEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTI 121

Query: 198 ----------------------------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
                                       D++    L+   C D +VSE  +L  Q+    
Sbjct: 122 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQICR-- 179

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             P+   F  L++  C +        LL  MV     PD  TY   ++G+CK    + A 
Sbjct: 180 --PDVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSAL 237

Query: 290 RVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +   ++E  ++ P+ V+Y+ +I GLCK G   D+  ++ EM  KG+ PN  TYN MI G
Sbjct: 238 NLLRKMEEISHIKPNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGG 297

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C       A+RL +EML++      VTYN LI      G+  EA  L++EM  +GI  +
Sbjct: 298 FCISGRWSAAQRLLQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 357

Query: 409 VITYNTLIQGYCKEGKI 425
            ITYN++I G+CK+ ++
Sbjct: 358 TITYNSMIDGFCKQDRL 374



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 23/341 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SP++V+ N L ++ V+   F  A +  D     G  PN  +    I   C+   ++ A 
Sbjct: 319 ISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAE 378

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G    + T+ + + G     R D   +L H++   G          LI  F
Sbjct: 379 DMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGF 438

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---- 265
           C  G ++   +L +Q++  G+ P+    N L+   C+        E+   M         
Sbjct: 439 CLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDA 498

Query: 266 -------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                   PD  TY  +I GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 499 SHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   PN  T+N++I+GYC+   +++   L  EM  +G     + Y 
Sbjct: 559 RLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYI 618

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           TLI G    G  + A  +F+EM   G++ D IT   ++ G+
Sbjct: 619 TLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/325 (22%), Positives = 146/325 (44%), Gaps = 23/325 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ N + D   +      A D    + + G SP+  +    I   C +  I++ 
Sbjct: 353 GIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDG 412

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G+  +  T+N+ + G   +   +    L   +I SG          L+  
Sbjct: 413 MELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDG 472

Query: 209 FCNDGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            C++GK+ +  E+ + + +           +G+ P+   +N LI     +  F    EL 
Sbjct: 473 LCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELY 532

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD  TY  +I+GLCK  +  EA ++F  +  + + P+ V + T+I+G CK 
Sbjct: 533 EEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKA 592

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + D  +++ EM  +G++ +   Y ++I+G+ ++ N+  A  + +EM+  G    T+T 
Sbjct: 593 GRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITI 652

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQ 402
             ++ G       + A  + E++ +
Sbjct: 653 RNMLTGFWSKEELERAVAMLEDLQR 677



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 82/189 (43%), Gaps = 4/189 (2%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S   E K      +L   M+     P    + +++  + +  +      ++  ++ +
Sbjct: 51  KLRSGSYEIKGLEDAIDLFSDMLRSRPLPSVIDFNKLMGAVVRMERPDLVISLYQKMERK 110

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               D   +T +I   C    L  A   + ++   GL P+  T+ +++HG C    + EA
Sbjct: 111 QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFTTLLHGLCLDHRVSEA 170

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  ++         +T+ TL+ GLC  GR  EA  L + M + G+  D ITY T + G
Sbjct: 171 LDLFHQICRP----DVLTFTTLMNGLCREGRVVEAVALLDRMVENGLQPDQITYGTFVDG 226

Query: 419 YCKEGKIVN 427
            CK G  V+
Sbjct: 227 MCKMGDTVS 235



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 29/203 (14%)

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGL 153
           H   G  PD+++ N+L   L+    F  A +  +     G  P+  +    I  LC+   
Sbjct: 500 HPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 559

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           ++EA   F  +       ++ T+N+                          LI  +C  G
Sbjct: 560 LDEATQMFVSMGSKSFSPNVVTFNT--------------------------LINGYCKAG 593

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           +V +G EL  ++   G+V +   +  LI  F +  N     ++   M++    PD  T  
Sbjct: 594 RVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIR 653

Query: 274 EVINGLCKSRKRLEAYRVFNDLK 296
            ++ G     +   A  +  DL+
Sbjct: 654 NMLTGFWSKEELERAVAMLEDLQ 676


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+   NVL   L +      A      +   G  P   S    I   C+SG +++ 
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     + E  VF  + T++  + G  K  + D   KL+ ++ + G          LI  
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+   G E+ +Q+L  G+ P+   +N LI+  C+  +     +L+  M  R   PD
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I+G CK      A  +  ++ + G   D V +T +I G C+ G + +A +   
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+ P++ TY  +IHG+C+  +++   +L KEM   G+    VTYN L+ GLC  G
Sbjct: 460 EMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQG 519

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +   A  L + M   G+  D ITYN L++G+CK G
Sbjct: 520 QMKNANMLLDAMLNLGVVPDDITYNILLEGHCKHG 554



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 199/417 (47%), Gaps = 31/417 (7%)

Query: 39  LYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHS 98
           + T I++ + K++ TKP    +L   +PS   N  +          +    + FF+WL +
Sbjct: 38  ILTTISEAI-KVSPTKP-LHSSLKRILPSLTPNHLIDLINLNPHSLSPPSLLSFFKWLST 95

Query: 99  HYGFSPDLVS-CNVLF-----DSLVEAR--------------AFKVAMDFLDSTGFSPNP 138
            + F   + S C +         L EA+              A  V    L++ G   + 
Sbjct: 96  QHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSN 155

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
               + +    +SG   +A   F  +++  +     +        +K++ T   W  Y +
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +++ GY         L+   C + K++E   L  ++ + GL P   +FN LI+ +C+  N
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             +   L   M+     PD FTY  +INGLCK  +  +A ++F ++ +RG VP+ V +TT
Sbjct: 276 LDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTT 335

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+G C  G      +++ +M+ KG+ P+  TYN++I+G C++ +L EAK+L  EM  +G
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                 TY  LI G C  G  + A  + +EM ++GI  D + +  LI G+C+EG+++
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVI 452



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 169/351 (48%), Gaps = 13/351 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +I+ F+ +  H    P   SC  LFD L++      A  F +     G+ P+     + +
Sbjct: 174 AIQCFRLVRKHNLQIP-FHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLM 232

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------Y 196
             LC+   I EA   F ++ + G+  ++ ++N+ + G  K    D  ++L         +
Sbjct: 233 HRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVF 292

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D+     LI   C +G++ +  +L  ++ + GLVP +  F  LI+  C         E+
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M+ +   PD  TY  +INGLCK     EA ++  ++ +RG  PD   YT +I G CK
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L  A ++  EM+ +G+  +   + ++I G+CR   + EA+R  +EML+ G      T
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           Y  +I G C  G     + L +EM   G    V+TYN L+ G CK+G++ N
Sbjct: 473 YTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 165/339 (48%), Gaps = 22/339 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P +VS N L +   ++    + F++    +++  F P+  +  + I  LC+ G +++
Sbjct: 255 GLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVF-PDVFTYSVLINGLCKEGQLDD 313

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F ++ + G+  +  T+ + + G     R DL  ++Y  ++  G          LI 
Sbjct: 314 ANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLIN 373

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + E  +L+ ++ + GL P+   +  LI   C++ +     E+   MV      
Sbjct: 374 GLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIEL 433

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           DN  +  +I+G C+  + +EA R   ++ E G  PD   YT VIHG CK G +    K+ 
Sbjct: 434 DNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLL 493

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G +P   TYN +++G C+   ++ A  L   ML+ G     +TYN L+ G C H
Sbjct: 494 KEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNLGVVPDDITYNILLEGHCKH 553

Query: 388 GRTDEAYHLFEEM-AQKGIFRDVITYNTLI---QGYCKE 422
           G  ++    F+++ ++KG+ +D  +Y +LI   +  CKE
Sbjct: 554 GNRED----FDKLQSEKGLVQDYGSYTSLIGDLRKTCKE 588


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 155/307 (50%), Gaps = 9/307 (2%)

Query: 128  FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
             ++  G++P+  S    I   C  G +++ +    K+K+ G+  +  T+ S +    +I 
Sbjct: 694  LMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRIC 753

Query: 188  RTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
            +     + + ++I  G L         +  FC  G +    +   ++    + P+   + 
Sbjct: 754  KLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 813

Query: 239  KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
             +IS FC+  +     +L H M+ R   PD  T+ E++NG CK+    +A+RV N + + 
Sbjct: 814  AIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQA 873

Query: 299  GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
            G  P+ V YTT+I GLCK G L  A ++  EM   GL PN +TYNS+++G C+  N+EEA
Sbjct: 874  GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 933

Query: 359  KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             +L  E    G    TVTY TL+   C  G  D+A  +  EM  KG+   ++T+N L+ G
Sbjct: 934  VKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNG 993

Query: 419  YCKEGKI 425
            +C  G +
Sbjct: 994  FCLHGML 1000



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 182/381 (47%), Gaps = 36/381 (9%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP-- 136
            +K + +  L + FF W  S      +L S  ++    V ++  KVA   + S    P  
Sbjct: 517 LMKIKCDYRLVLDFFDWARSRR--DSNLESLCIVIHLAVASKDLKVAQSLISSFWERPKL 574

Query: 137 ----------------------NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
                                 +P   +++ Q L E G++ EA   F K+   G+  S+ 
Sbjct: 575 NVTESFVQFFDLLVYTYKDWGSDPRVFDVFFQVLVEFGMLPEARKVFEKMLNYGLVLSVD 634

Query: 175 TWNSALLGCIK-IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
           + N  L    K  ++T     ++ +  E G          +I   C  G+++E + LL  
Sbjct: 635 SCNVYLARLSKDCNKTATAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLL 694

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +   G  P+  +++ +I+ +C      +V +L+  M  +   P+++TY  +I  LC+  K
Sbjct: 695 MELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICK 754

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             EA   F+++  +G +PDT++YTT++ G CK G +  A K ++EM  + + P+  TY +
Sbjct: 755 LAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTA 814

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G+C+I ++ EA +L  EML +G     +T+  L+ G C  G   +A+ +   M Q G
Sbjct: 815 IISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAG 874

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
              +V+TY TLI G CKEG +
Sbjct: 875 CSPNVVTYTTLIDGLCKEGDL 895



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 143/297 (48%), Gaps = 9/297 (3%)

Query: 133  GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
            G  P+       +   C+ G I  A   F ++    +   + T+ + + G  +I      
Sbjct: 769  GILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 828

Query: 193  WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             KL+H+++  G          L+  +C  G + + + +   +++ G  P    +  LI  
Sbjct: 829  GKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDG 888

Query: 244  FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             C++ +    +ELLH M      P+ FTY  ++NGLCKS    EA ++  + +  G   D
Sbjct: 889  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948

Query: 304  TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            TV YTT++   CK G +  A+++  EM+ KGL P   T+N +++G+C    LE+ ++L  
Sbjct: 949  TVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1008

Query: 364  EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             ML KG      T+N L+   C+      A  ++++M  +G+  D  TY  L++G+C
Sbjct: 1009 WMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHC 1065



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 155/338 (45%), Gaps = 12/338 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  PD +    L D   +    + A  F   + S   +P+  +    I   C+ G + EA
Sbjct: 769  GILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 828

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               F ++   G+   I T+   + G  K       +++++ +I++G          LI  
Sbjct: 829  GKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDG 888

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             C +G +    ELL ++ + GL P    +N +++  C+  N     +L+    A     D
Sbjct: 889  LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 948

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +++  CKS +  +A  +  ++  +G  P  V +  +++G C  G L D  K+  
Sbjct: 949  TVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 1008

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M+ KG+ PN  T+N ++  YC  +NL+ A  ++K+M  +G      TY  L+ G C   
Sbjct: 1009 WMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNAR 1068

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               EA+ LF+EM  KG    V TY+ LI+G+ K  K V
Sbjct: 1069 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKFV 1106



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 75/225 (33%), Positives = 112/225 (49%), Gaps = 9/225 (4%)

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF---CEKKNFGRV--SELLHTMV 261
           Q     G + E  ++  ++L  GLV    + N  ++R    C K     +   E     V
Sbjct: 606 QVLVEFGMLPEARKVFEKMLNYGLVLSVDSCNVYLARLSKDCNKTATAIIVFREFPEVGV 665

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
             N A    +Y  VI+ +C+  +  EA+ +   ++ +GY PD + Y+TVI+G C+ G L 
Sbjct: 666 CWNVA----SYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVINGYCRFGELD 721

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
              K+  +M  KGL PN YTY S+I   CRI  L EA+    EM+ +G    T+ Y TL+
Sbjct: 722 KVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLV 781

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            G C  G    A   F EM  + I  DV+TY  +I G+C+ G +V
Sbjct: 782 DGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMV 826



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 155/340 (45%), Gaps = 15/340 (4%)

Query: 82   QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPN 137
            ++ ++  + +FF  +HS    +PD+++   +     +      A K+  + L   G  P+
Sbjct: 786  KRGDIRAASKFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFHEML-CRGLEPD 843

Query: 138  PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
              +    +   C++G I++AF   + + + G   ++ T+ + + G  K    D   +L H
Sbjct: 844  IITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLH 903

Query: 198  DLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            ++ + G          ++   C  G + E  +L+ +    GL  +   +  L+  +C+  
Sbjct: 904  EMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSG 963

Query: 249  NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
               +  E+L  M+ +   P   T+  ++NG C      +  ++ N +  +G  P+   + 
Sbjct: 964  EMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFN 1023

Query: 309  TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
             ++   C    L  A  ++ +M  +G+ P+  TY +++ G+C   N++EA  L +EM  K
Sbjct: 1024 CLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGK 1083

Query: 369  GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            G+  +  TY+ LI G     +  EA  +F++M + G+  D
Sbjct: 1084 GFSVSVSTYSVLIKGFFKRKKFVEAREIFDQMRRDGLAAD 1123



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 121/263 (46%), Gaps = 15/263 (5%)

Query: 96   LHSHY---GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
            +H+H    G SP++V+   L D L +      A + L      G  PN  +    +  LC
Sbjct: 866  VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 925

Query: 150  ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
            +SG IEEA     + +  G+     T+ + +    K    D   ++  +++  G      
Sbjct: 926  KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGLQPTIV 985

Query: 204  ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
                L+  FC  G + +G +LL  +L  G+ P  T FN L+ ++C + N    + +   M
Sbjct: 986  TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQYCIRNNLKAATAIYKDM 1045

Query: 261  VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             +R   PD  TYE ++ G C +R   EA+ +F ++K +G+      Y+ +I G  K    
Sbjct: 1046 CSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFFKRKKF 1105

Query: 321  GDARKMWFEMIHKGLLPNEYTYN 343
             +AR+++ +M   GL  ++  ++
Sbjct: 1106 VEAREIFDQMRRDGLAADKEIFD 1128


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/222 (37%), Positives = 120/222 (54%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C  GKV +   +LR+++  G+VP+   +  LI  FC+  N     +L   M  + 
Sbjct: 51  IILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQR 110

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD   Y  VI GLC+  K +EA +VFN +  RG  PD V YTT+I G CK G +  A 
Sbjct: 111 IVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAF 170

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M+  GL PN  TY ++  G C++  ++ A  L  EM  KG      TYN+L+ GL
Sbjct: 171 SLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGL 230

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G   +A  L EEM   G++ D IT+ TL+  YCK G++V
Sbjct: 231 CKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMV 272



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 162/333 (48%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L + N +   L ++     A   L    + G  P+       I   C+ G I+ A
Sbjct: 40  GLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAA 99

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG---CIKIDRTDLVW-KLYH-----DLIESGYLIQA 208
           +  F ++++  +      + + + G   C K+   D V+ K++      D +    LI  
Sbjct: 100 YKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDG 159

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G++ + + L  Q+++ GL P    +  L    C+       +ELLH M  +    +
Sbjct: 160 YCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLN 219

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCKS    +A ++  +++  G  PDT+ +TT++   CK G +  A ++  
Sbjct: 220 ICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLR 279

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +GL P   T+N +++G+C    LE+ +RL   ML+KG    T TYN+L+   C+  
Sbjct: 280 EMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRN 339

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                  +++ M  +G+  D  TYN LI+G+CK
Sbjct: 340 NMRCTTEIYKGMCARGVMPDSNTYNILIKGHCK 372



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 151/304 (49%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G  P+  +    I   C+SG +E+AF   +++ + G+  ++ T+ +   G  K+ + D
Sbjct: 143 SRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVD 202

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L H++   G          L+   C  G + +  +L+ ++   G+ P+   F  L+
Sbjct: 203 TANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLM 262

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             +C+     +  ELL  M+ R   P   T+  ++NG C S    +  R+   + E+G +
Sbjct: 263 DAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIM 322

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+T  Y +++   C    +    +++  M  +G++P+  TYN +I G+C+  N++EA  L
Sbjct: 323 PNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFL 382

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           HKEM +KG+  T  +YN++I G     +  EA  LFEEM ++G+  D   YN  +     
Sbjct: 383 HKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYG 442

Query: 422 EGKI 425
           EG +
Sbjct: 443 EGNM 446



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 151/326 (46%), Gaps = 12/326 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V    L D   +    + A    D ++     P+  +    I  LC  G + EA
Sbjct: 75  GIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEA 134

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+K+   GV     T+ + + G  K    +  + L++ +++SG          L   
Sbjct: 135 DKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADG 194

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V    ELL ++   GL      +N L++  C+  N  +  +L+  M      PD
Sbjct: 195 LCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPD 254

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +++  CK+ + ++A+ +  ++ +RG  P  + +  +++G C  G L D  ++  
Sbjct: 255 TITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLA 314

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ KG++PN  TYNS++  YC  +N+     ++K M  +G    + TYN LI G C   
Sbjct: 315 WMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKAR 374

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNT 414
              EA+ L +EMA+KG      +YN+
Sbjct: 375 NMKEAWFLHKEMAEKGFNLTASSYNS 400



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 95/163 (58%)

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R  APD  +Y  VING C   +  +  ++  +++ +G  P+   Y ++I  LCK G + D
Sbjct: 4   RGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGKVDD 63

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  EMI++G++P+   Y ++I G+C++ N++ A +L  EM  +      + Y  +I 
Sbjct: 64  AERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTAVIC 123

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC  G+  EA  +F +M  +G+  D +TY TLI GYCK G++
Sbjct: 124 GLCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLIDGYCKSGEM 166



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 80/132 (60%)

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +K RG  PD V Y+TVI+G C  G L    K+  EM  KGL PN YTYNS+I   C+   
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +++A+R+ +EM+++G    TV Y TLI G C  G    AY LF+EM ++ I  D I Y  
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 415 LIQGYCKEGKIV 426
           +I G C+ GK++
Sbjct: 121 VICGLCRCGKMM 132



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 129/279 (46%), Gaps = 12/279 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L D L +      A + L      G   N  +    +  LC+SG I +A
Sbjct: 180 GLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQA 239

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                +++  G++    T+ + +    K        +L  ++++ G          L+  
Sbjct: 240 VKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITFNVLMNG 299

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + +G  LL  +LE G++P  T +N L+ ++C + N    +E+   M AR   PD
Sbjct: 300 FCMSGMLEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPD 359

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I G CK+R   EA+ +  ++ E+G+      Y ++I G  K   + +AR+++ 
Sbjct: 360 SNTYNILIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFE 419

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           EM  +G+  +   YN  +       N+E A  L  E ++
Sbjct: 420 EMRREGMAADAEIYNLFVDISYGEGNMETALELCDEAIE 458


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 173/376 (46%), Gaps = 50/376 (13%)

Query: 99  HYGFSPDLVSCNVLFDSLVE-----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +YG    + SCNV    L +     A A  V  +F +  G   N  S  + I  +C+ G 
Sbjct: 203 NYGLVLSVDSCNVYLTRLSKDCYKTATAIIVFREFPE-VGVCWNVASYNIVIHFVCQLGR 261

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           I+EA      ++  G    + ++++ + G  +    D VWKL   +   G          
Sbjct: 262 IKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGS 321

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE--------- 255
           +I   C   K++E  E   +++  G++P+   +  LI  FC++ +    S+         
Sbjct: 322 IIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRD 381

Query: 256 --------------------------LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
                                     L H M  +   PD+ T+ E+ING CK+    +A+
Sbjct: 382 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAF 441

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           RV N + + G  P+ V YTT+I GLCK G L  A ++  EM   GL PN +TYNS+++G 
Sbjct: 442 RVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGL 501

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+  N+EEA +L  E    G    TVTY TL+   C  G  D+A  + +EM  KG+   +
Sbjct: 502 CKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTI 561

Query: 410 ITYNTLIQGYCKEGKI 425
           +T+N L+ G+C  G +
Sbjct: 562 VTFNVLMNGFCLHGML 577



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 144/298 (48%), Gaps = 9/298 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+       I   C+ G I  A   F ++    +   + T+ + + G  +I      
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            KL+H++   G          LI  +C  G + + + +   +++ G  P    +  LI  
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C++ +    +ELLH M      P+ FTY  ++NGLCKS    EA ++  + +  G   D
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           TV YTT++   CK G +  A+++  EM+ KGL P   T+N +++G+C    LE+ ++L  
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 585

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            ML KG      T+N+L+   C+      A  ++++M  +G+  D  TY  L++G+CK
Sbjct: 586 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCK 643



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 156/338 (46%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V    L D   +    + A  F   + S   +P+  +    I   C+ G + EA
Sbjct: 346 GILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEA 405

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++   G+     T+   + G  K       +++++ +I++G          LI  
Sbjct: 406 GKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDG 465

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G +    ELL ++ + GL P    +N +++  C+  N     +L+    A     D
Sbjct: 466 LCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNAD 525

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++  CKS +  +A  +  ++  +G  P  V +  +++G C  G L D  K+  
Sbjct: 526 TVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLN 585

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ KG+ PN  T+NS++  YC  +NL+ A  ++K+M  +G G    TY  L+ G C   
Sbjct: 586 WMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKAR 645

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              EA+ LF+EM  KG    V TY+ LI+G+ K  K +
Sbjct: 646 NMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFL 683



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/464 (24%), Positives = 192/464 (41%), Gaps = 69/464 (14%)

Query: 3   RAPFSVLTILRQNPRNFQNP----NTQLRNLSIET------------KESQQLYTEIAKQ 46
           + PF+ L + R    +F+N     + Q R LS  T            K++    TE   Q
Sbjct: 2   KKPFTGLLMKRGTLSSFRNFIQLFSLQSRGLSFSTLTDTRPFPDYSPKKASVRDTEFVHQ 61

Query: 47  VCKITRTKPRWEQTLLSDIP-SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPD 105
           +  + + + R E    S  P    F         +K + +  L + FF W  S      +
Sbjct: 62  ITNVIKLR-RAEPLRRSLKPYECKFKTDHLIWVLMKIKCDYRLVLDFFDWARSRR--DSN 118

Query: 106 LVSCNVLFDSLVEARAFKVAMDFLDSTGFSP------------------------NPNSL 141
           L S  ++    V ++  KVA   + S    P                        +P   
Sbjct: 119 LESLCIVIHLAVASKDLKVAQSLISSFWERPKLNVTDSFVQFFDLLVYTYKDWGSDPRVF 178

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +++ Q L + GL+ EA   F K+   G+  S+ + N  L             +L  D  +
Sbjct: 179 DVFFQVLVDFGLLREARRVFEKMLNYGLVLSVDSCNVYLT------------RLSKDCYK 226

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
           +   I  F             R+  E G+     ++N +I   C+         LL  M 
Sbjct: 227 TATAIIVF-------------REFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLME 273

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            +   PD  +Y  V+NG C+  +  + +++   +K +G  P++ +Y ++I  LC++  L 
Sbjct: 274 LKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLA 333

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A + + EMI +G+LP+   Y ++I G+C+  ++  A +   EM  +      +TY  +I
Sbjct: 334 EAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAII 393

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +G C  G   EA  LF EM  KG+  D +T+  LI GYCK G +
Sbjct: 394 SGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHM 437



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/390 (20%), Positives = 171/390 (43%), Gaps = 17/390 (4%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK---QQNNVLLSI 90
           K +  +Y  I   +C+I +     E+     I      D + +   +    ++ ++  + 
Sbjct: 313 KPNSYIYGSIIGLLCRICKL-AEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAAS 371

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           +FF  +HS    +PD+++   +     +      A          G  P+  +    I  
Sbjct: 372 KFFYEMHSR-DITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELING 430

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C++G +++AF   + + + G   ++ T+ + + G  K    D   +L H++ + G    
Sbjct: 431 YCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPN 490

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 ++   C  G + E  +L+ +    GL  +   +  L+  +C+     +  E+L 
Sbjct: 491 IFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILK 550

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ +   P   T+  ++NG C      +  ++ N +  +G  P+   + +++   C   
Sbjct: 551 EMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRN 610

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L  A  ++ +M  +G+ P+  TY +++ G+C+  N++EA  L +EM  KG+  +  TY+
Sbjct: 611 NLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYS 670

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            LI G     +  EA  +F++M ++G+  D
Sbjct: 671 VLIKGFLKRKKFLEAREVFDQMRREGLAAD 700



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 123/263 (46%), Gaps = 15/263 (5%)

Query: 96  LHSHY---GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
           +H+H    G SP++V+   L D L +      A + L      G  PN  +    +  LC
Sbjct: 443 VHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLC 502

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           +SG IEEA     + +  G+     T+ + +    K    D   ++  +++  G      
Sbjct: 503 KSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIV 562

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+  FC  G + +G +LL  +L  G+ P  T FN L+ ++C + N    + +   M
Sbjct: 563 TFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDM 622

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            +R   PD  TYE ++ G CK+R   EA+ +F ++K +G+      Y+ +I G  K    
Sbjct: 623 CSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKF 682

Query: 321 GDARKMWFEMIHKGLLPNEYTYN 343
            +AR+++ +M  +GL  ++  ++
Sbjct: 683 LEAREVFDQMRREGLAADKEIFD 705


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 13/346 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I  F  LHS  G +P + +  +L +          A   L +    GF PN  +    I
Sbjct: 74  AISLFSQLHSK-GITPSIATLTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLI 132

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYHDLIE 201
              C +G++ +A      L   G      ++ S + G  K  +T     L+ K+  DL+ 
Sbjct: 133 NGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVR 192

Query: 202 SGYL-----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
              +     I   C D  +++   L   V   G++ +  A+N LI   C    +   + L
Sbjct: 193 PNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRL 252

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  MV  N  PD++T+  +++ LCK  + +EA  VF  + +RG  PD V Y  ++ G C 
Sbjct: 253 LTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCL 312

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +AR+++  M+ +GL P+   YN +I+GYC+ID ++EA  L KE+  K       T
Sbjct: 313 SNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLAT 372

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           YN+LI GLC  GR      L +EM  +G   D++TYN  +  +CK 
Sbjct: 373 YNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKS 418



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+ N L +          AM F   L + G+  +  S    I  LC++G   +A
Sbjct: 120 GFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDA 179

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K++E  V  ++ T+++ + G  K        +L+          D++    LI  
Sbjct: 180 LQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHG 239

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G+  E   LL  ++   + P++  FN L+   C++        +   M+ R   PD
Sbjct: 240 CCSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPD 299

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G C S    EA  +FN + +RG  PD + Y  +I+G CK+  + +A  ++ 
Sbjct: 300 IVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFK 359

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+  K L+PN  TYNS+I G C++  +   + L  EM D+G     VTYN  +   C   
Sbjct: 360 EIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSK 419

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A  LF ++ Q GI+ D   Y+ +++ +CK  K+
Sbjct: 420 PYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKL 455



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/354 (27%), Positives = 169/354 (47%), Gaps = 16/354 (4%)

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNS 140
           ++ LLS  F + L  H    P +   + L  ++V    +  A+     L S G +P+  +
Sbjct: 37  DDTLLS--FNRMLRKHP--PPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIAT 92

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIK-------IDRTDLV 192
           L + I C C    +  AF     + +MG   ++ T+N+ + G CI          R DL+
Sbjct: 93  LTILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLM 152

Query: 193 WKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
            K Y  D    G LI   C +G+  +  +LL+++ ED + P    ++ +I   C+ +   
Sbjct: 153 AKGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIA 212

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               L   + +R    D   Y  +I+G C   +  EA R+   +      PD   +  ++
Sbjct: 213 DALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILV 272

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             LCK G + +A+ ++  M+ +G  P+  TYN+++ G+C  +N+ EA+ L   M+ +G  
Sbjct: 273 DALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLE 332

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + YN LI G C     DEA  LF+E+  K +  ++ TYN+LI G CK G++
Sbjct: 333 PDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRM 386



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/324 (24%), Positives = 136/324 (41%), Gaps = 43/324 (13%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    I  LC+  LI +A   FS +   G+   +  +NS + GC  + +     +L
Sbjct: 193 PNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRL 252

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              ++             L+ A C +G++ E   +   +++ G  P+   +N L+  FC 
Sbjct: 253 LTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCL 312

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             N     EL + MV R   PD   Y  +ING CK     EA  +F +++ +  VP+   
Sbjct: 313 SNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLAT 372

Query: 307 YTTVIHGLCKMGWLGDARKMWFEM----------------------------------IH 332
           Y ++I GLCK+G +   +++  EM                                  I 
Sbjct: 373 YNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIV 432

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +G+ P+ Y Y+ ++  +C+ + L+ A+   + +L  G      TY  +I  LC     DE
Sbjct: 433 QGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDE 492

Query: 393 AYHLFEEMAQKGIFRDVITYNTLI 416
           A  L  +M       D +T+ T+I
Sbjct: 493 AMTLLSKMDDNDCPPDAVTFETII 516



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 145/332 (43%), Gaps = 14/332 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F  + S  G   D+V+ N L         ++ A   L        +P+  +  + +
Sbjct: 214 ALRLFSLVTSR-GILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYTFNILV 272

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
             LC+ G I EA   F+ + + G    I T+N+ + G    +      +L++ +++ G  
Sbjct: 273 DALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLE 332

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C    V E   L +++    LVP    +N LI   C+      V EL
Sbjct: 333 PDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQEL 392

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M  R ++PD  TY   ++  CKS+   +A  +F  + + G  PD  MY  ++   CK
Sbjct: 393 VDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCK 451

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              L  A +    ++  G  PN  TY  MI+  C+  + +EA  L  +M D       VT
Sbjct: 452 GEKLKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVT 511

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           + T+I  L     TD+A  L  EM ++G+  D
Sbjct: 512 FETIIGALQERNETDKAEKLRLEMIERGLVND 543



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 105/222 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A    G       L  Q+   G+ P       LI+ +C + +      LL T++   
Sbjct: 61  LLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAHLSFAFSLLGTILKMG 120

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  T+  +ING C +    +A     DL  +GY  D   Y ++I+GLCK G   DA 
Sbjct: 121 FQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGSLINGLCKNGQTRDAL 180

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +M    + PN  TY+++I G C+   + +A RL   +  +G     V YN+LI G 
Sbjct: 181 QLLQKMEEDLVRPNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGC 240

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G+  EA  L   M +  I  D  T+N L+   CKEG+IV
Sbjct: 241 CSVGQWREATRLLTMMVRGNINPDDYTFNILVDALCKEGRIV 282



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 88/168 (52%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+ ++  P  F +++++  + +      A  +F+ L  +G  P     T +I+  C    
Sbjct: 46  MLRKHPPPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATLTILINCYCHQAH 105

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  A  +   ++  G  PN  T+N++I+G+C    + +A     +++ KGY     +Y +
Sbjct: 106 LSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMAKGYPLDEFSYGS 165

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           LI GLC +G+T +A  L ++M +  +  ++ITY+T+I G CK+  I +
Sbjct: 166 LINGLCKNGQTRDALQLLQKMEEDLVRPNLITYSTVIDGLCKDRLIAD 213



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 59/251 (23%), Positives = 113/251 (45%), Gaps = 13/251 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L +    +     A +  +     G  P+  +  + I   C+  +++EA
Sbjct: 295 GEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMVDEA 354

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F +++   +  ++ T+NS + G  K+ R   V +L  ++ + G           + A
Sbjct: 355 MVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDA 414

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC      +   L RQ+++ G+ P+   ++ ++  FC+ +      E L  ++     P+
Sbjct: 415 FCKSKPYEKAISLFRQIVQ-GIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPN 473

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +IN LCK     EA  + + + +    PD V + T+I  L +      A K+  
Sbjct: 474 VRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFETIIGALQERNETDKAEKLRL 533

Query: 329 EMIHKGLLPNE 339
           EMI +GL+ +E
Sbjct: 534 EMIERGLVNDE 544


>gi|302142431|emb|CBI19634.3| unnamed protein product [Vitis vinifera]
          Length = 839

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 178/373 (47%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L SCN L ++LV   E          +   G  P+   + + +   C+ G ++EA
Sbjct: 152 GRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEA 211

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI--------------------------------- 184
                K++ +GV  +I T++S + G +                                 
Sbjct: 212 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 271

Query: 185 -----KIDRTDLVWK-------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                K+D  + V +       L  D    G LI  +C  GK+ +   LL ++L  GL  
Sbjct: 272 YCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKT 331

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
                N LI+ +C++        ++  MV  N  PD+++Y  +++G C+     EA+ + 
Sbjct: 332 NLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLC 391

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + + + G  P  + Y T++ GLC++G   DA ++W  M+ +G+ P+E  Y++++ G  ++
Sbjct: 392 DKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKM 451

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           +N E A  L K++L +G+ ++ +T+NT+I+GLC  G+  EA  +F++M   G   D ITY
Sbjct: 452 ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITY 511

Query: 413 NTLIQGYCKEGKI 425
            TLI GYCK   +
Sbjct: 512 RTLIDGYCKASNV 524



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 179/389 (46%), Gaps = 32/389 (8%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           +F F+D +        + N   S+ FFQ++     F P++ S   L   L   R +    
Sbjct: 29  NFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETR 88

Query: 127 DFLDST----------------------GFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
            +L+                         F+ +P   ++ ++   E GL + A   F  +
Sbjct: 89  AYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNM 148

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            + G   S+++ NS L   +K   T     +Y  +I  G          ++ AFC DGKV
Sbjct: 149 GKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKV 208

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E    ++++   G+ P    ++ LI+ +    +      +L  M  +  + +  TY  +
Sbjct: 209 DEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLL 268

Query: 276 INGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           I G CK  K  EA +V   ++E    VPD   Y  +I G C+ G + DA ++  EM+  G
Sbjct: 269 IKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLG 328

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L  N +  NS+I+GYC+   + EA+ +   M+D      + +YNTL+ G C  G T EA+
Sbjct: 329 LKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAF 388

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +L ++M Q+GI   V+TYNTL++G C+ G
Sbjct: 389 NLCDKMLQEGIEPTVLTYNTLLKGLCRVG 417



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 166/344 (48%), Gaps = 29/344 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF+   ++ N +   L +      A +  D     G SP+  +    I   C++  + +A
Sbjct: 468 GFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQA 527

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDL-----VWKLYHDLIESGYLIQA 208
           F     ++   +  SI+ +NS + G  K    ++ TDL     +  L  +++  G LI  
Sbjct: 528 FKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDG 587

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
           +C +G + + +    ++ E+GL       + ++S        GR+ E   L+  MV    
Sbjct: 588 WCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGL---YRLGRIDEANLLMQKMVDHGF 644

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG----YVPDTVMYTTVIHGLCKMGWLG 321
            PD+  +        KS  R  A +   D  +       +P+ ++Y   I GLCK G + 
Sbjct: 645 FPDHECF-------LKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVD 697

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DAR+ +  +  KG +P+ +TY ++IHGY    N++EA RL  EML +G     VTYN LI
Sbjct: 698 DARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALI 757

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GLC     D A  LF ++ QKG+F +V+TYNTLI GYCK G +
Sbjct: 758 NGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 801



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/341 (27%), Positives = 162/341 (47%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S  G S ++V+  +L     +      A KV     +     P+  +  + I   C +G 
Sbjct: 254 SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGK 313

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLV------WKLYHDLIESGY 204
           I++A     ++  +G+  ++   NS + G  K   I   + V      W L  D      
Sbjct: 314 IDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNT 373

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  +C +G  SE + L  ++L++G+ P    +N L+   C    F    ++ H M+ R 
Sbjct: 374 LLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRG 433

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            APD   Y  +++GL K      A  ++ D+  RG+    + + T+I GLCKMG + +A 
Sbjct: 434 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAE 493

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ +M   G  P+  TY ++I GYC+  N+ +A ++   M  +    +   YN+LI+GL
Sbjct: 494 EIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGL 553

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               R  E   L  EM  +G+  +++TY  LI G+CKEG +
Sbjct: 554 FKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 594



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 32/307 (10%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAF 158
            SP +   N L   L ++R      D L   G    +PN  +    I   C+ G++++AF
Sbjct: 539 ISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 598

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
            ++ ++ E G+  +I   ++ + G  ++                          G++ E 
Sbjct: 599 SSYFEMTENGLSANIIICSTMVSGLYRL--------------------------GRIDEA 632

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             L++++++ G  P++  F K   R+   +   ++++ L         P+N  Y   I G
Sbjct: 633 NLLMQKMVDHGFFPDHECFLKSDIRYAAIQ---KIADSLDESCKTFLLPNNIVYNIAIAG 689

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK+ K  +A R F+ L  +G+VPD   Y T+IHG    G + +A ++  EM+ +GL+PN
Sbjct: 690 LCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPN 749

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+ +N++ A+RL  ++  KG     VTYNTLI G C  G  D A+ L +
Sbjct: 750 IVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKD 809

Query: 399 EMAQKGI 405
           +M ++GI
Sbjct: 810 KMIEEGI 816



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 163/339 (48%), Gaps = 13/339 (3%)

Query: 101 GFSPDLVSCNVLFD---SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ + L +   SL +  A K  + F+   G S N  +  L I+  C+   ++EA
Sbjct: 222 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 281

Query: 158 FCAFSKLKE-MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                 ++E   +    + +   + G  +  + D   +L  +++  G          LI 
Sbjct: 282 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 341

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G++ E   ++ ++++  L P++ ++N L+  +C + +      L   M+     P
Sbjct: 342 GYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEP 401

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  ++ GLC+     +A ++++ + +RG  PD V Y+T++ GL KM     A  +W
Sbjct: 402 TVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLW 461

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++ +G   +  T+N+MI G C++  + EA+ +  +M D G     +TY TLI G C  
Sbjct: 462 KDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKA 521

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               +A+ +   M ++ I   +  YN+LI G  K  ++V
Sbjct: 522 SNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLV 560



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T F+ ++  + EK        +   M    R P   +   ++N L K+ +   A+ V+  
Sbjct: 123 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQ 182

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G VPD  M + +++  CK G + +A     +M + G+ PN  TY+S+I+GY  + +
Sbjct: 183 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGD 242

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYN 413
           +E AK + K M +KG     VTY  LI G C   + DEA  +   M ++  +  D   Y 
Sbjct: 243 VEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYG 302

Query: 414 TLIQGYCKEGKI 425
            LI GYC+ GKI
Sbjct: 303 VLIDGYCRTGKI 314



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 9/248 (3%)

Query: 187 DRTDLVWK----LYHDLIES----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           DR +++W     +Y +   S      +++ +   G       +   + + G +P   + N
Sbjct: 102 DRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCN 161

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            L++   +         +   M+     PD F    ++N  CK  K  EA      ++  
Sbjct: 162 SLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 221

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  P+ V Y ++I+G   +G +  A+ +   M  KG+  N  TY  +I GYC+   ++EA
Sbjct: 222 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 281

Query: 359 KRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           +++ + M ++         Y  LI G C  G+ D+A  L +EM + G+  ++   N+LI 
Sbjct: 282 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 341

Query: 418 GYCKEGKI 425
           GYCK G+I
Sbjct: 342 GYCKRGEI 349



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 57/125 (45%), Gaps = 6/125 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           RFF  L S  GF PD  +   L      A     AF++  + L   G  PN  +    I 
Sbjct: 701 RFFSML-SLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEML-RRGLVPNIVTYNALIN 758

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
            LC+S  ++ A   F KL + G+F ++ T+N+ + G  KI   D  +KL   +IE G   
Sbjct: 759 GLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISP 818

Query: 207 QAFCN 211
              CN
Sbjct: 819 SIQCN 823


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 180/378 (47%), Gaps = 19/378 (5%)

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
           LL D  SF        R+   ++ + LL++   Q      GF  D  +C V+     +  
Sbjct: 181 LLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQ------GFCLDNATCTVIVRVFCQKG 234

Query: 121 AFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
            F+   +        G  PN  +   +I  LC+   +++AF    ++   G+  ++ T  
Sbjct: 235 RFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHT 294

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLE 227
           S + G  KI  T+  ++L+  LI+S            +I  +C +GK++    LL +++E
Sbjct: 295 SLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVE 354

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            GL P    +  LIS  C++ +F    EL++ M      P+ +TY  +I+GLCK  K  E
Sbjct: 355 QGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQE 414

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           AY+V      +G   D V YT +I   CK G +  A  ++  M   G  P+ +TY ++I 
Sbjct: 415 AYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIA 474

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            YC+   +EE+++L  + L      T  TY ++IAG C  G++  A  +FE M Q G   
Sbjct: 475 RYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQA 534

Query: 408 DVITYNTLIQGYCKEGKI 425
           D ITY  LI G CKE ++
Sbjct: 535 DSITYGALISGLCKESRL 552



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 153/338 (45%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++ +   L + L +     RAF++ +  + S+ + PN ++  + I   C+ G +  
Sbjct: 285 GLKPNVYTHTSLINGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLAR 344

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A     ++ E G+  +  T+ + + G  K    +  ++L + +   G+         LI 
Sbjct: 345 AEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALID 404

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK+ E Y++LR     GL  +   +  +I+  C++ +     +L + M      P
Sbjct: 405 GLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHP 464

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I   C+ R+  E+ ++F+       VP    YT++I G CK+G    A +++
Sbjct: 465 DIHTYTTLIARYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVF 524

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  G   +  TY ++I G C+   LEEA+ L++ MLDK      VT  TL    C  
Sbjct: 525 ERMVQNGCQADSITYGALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCRR 584

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   A  + + + ++   R   T N L++     G +
Sbjct: 585 EKAVVAVSILDRLDKR---RKNHTVNVLVRKLSAIGHV 619



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 128/301 (42%), Gaps = 26/301 (8%)

Query: 124 VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
            A  F+D         ++   +    E+G + EA     +++  G+   ++T N      
Sbjct: 100 AATTFVDRGSLPMAHEAMRRMVAAFAEAGRLPEAADMVFEMRSHGLPFCVETAN------ 153

Query: 184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
                    W L   L    +       DG V+ G          GL+P+  +F  LI  
Sbjct: 154 ---------WVLRAGLDTGSFAYARKVFDGMVTRG----------GLLPDARSFRALIVG 194

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C       V  LL  M  +    DN T   ++   C+  +  +   +F  + E G  P+
Sbjct: 195 CCRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRVFCQKGRFRDVSELFRRMLEMGTPPN 254

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT  I GLCK  ++  A  +  EM+ KGL PN YT+ S+I+G C+I   E A RL  
Sbjct: 255 VVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGLCKIGWTERAFRLFL 314

Query: 364 EML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +++    Y     TY  +I G C  G+   A  L   M ++G+  +  TY TLI G+CKE
Sbjct: 315 KLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKE 374

Query: 423 G 423
           G
Sbjct: 375 G 375



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 1/109 (0%)

Query: 318 GWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           G    ARK++  M+ +G LLP+  ++ ++I G CR   +EE   L   M  +G+     T
Sbjct: 163 GSFAYARKVFDGMVTRGGLLPDARSFRALIVGCCRDGRMEEVDALLTVMQGQGFCLDNAT 222

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              ++   C  GR  +   LF  M + G   +V+ Y   I G CK   +
Sbjct: 223 CTVIVRVFCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYV 271


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 161/327 (49%), Gaps = 21/327 (6%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+LV+CN+L +S  +      AF V    L   G+ PN  +L   I+ LC +G I +
Sbjct: 92  GIKPNLVNCNILINSFCQLGHIPSAFSVLTKIL-KMGYKPNTITLNTLIKGLCLNGKIHD 150

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
             C   KLK+     ++  +N  +L  I  D                 L+  FC +G+V 
Sbjct: 151 KHCIVGKLKD-----AVDLFNKMILENINPDVYTFTI-----------LVDGFCKEGRVK 194

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   +L  ++  G+ P    +N L+  +   K   +   + +TM     +PD  +Y  +I
Sbjct: 195 EAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILI 254

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG CK +   EA  +  ++  +  +P+ V Y+++I GLCK G +  A K+  EM  +G  
Sbjct: 255 NGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQP 314

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN  TY+S++   C+   ++ A  L  +M ++G      TY  LI GLC  G+ ++A  +
Sbjct: 315 PNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKV 374

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           FE++  KG   +V TY  +IQG+C +G
Sbjct: 375 FEDLLVKGHNLNVYTYTVMIQGFCDKG 401



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 170/361 (47%), Gaps = 20/361 (5%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           FNF             N+V  ++  F  L       P+ +  N +  SLV+++ +   + 
Sbjct: 25  FNFIPYFSTSTTFHNNNDVDDAVSLFNRLLQQNPTPPN-IEFNKILGSLVKSKHYHTVLY 83

Query: 128 F---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
               ++  G  PN  +  + I   C+ G I  AF   +K+ +MG   +  T N+ + G  
Sbjct: 84  LSQKMEFRGIKPNLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKG-- 141

Query: 185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
                         L  +G +    C  GK+ +  +L  +++ + + P+   F  L+  F
Sbjct: 142 --------------LCLNGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGF 187

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C++        +L  M+ +   P   TY  +++G    ++  +A  +FN + + G  PD 
Sbjct: 188 CKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDI 247

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y+ +I+G CK+  + +A ++  EM HK ++PN  TY+S+I G C+   +  A +L  E
Sbjct: 248 QSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDE 307

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M D+G     VTY++++  LC + + D A  L  +M  +GI  ++ TY  LI+G C+ GK
Sbjct: 308 MHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGK 367

Query: 425 I 425
           +
Sbjct: 368 L 368



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/240 (27%), Positives = 121/240 (50%), Gaps = 10/240 (4%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF------- 250
           +L+    LI +FC  G +   + +L ++L+ G  P     N LI   C            
Sbjct: 96  NLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIV 155

Query: 251 GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           G++ +   L + M+  N  PD +T+  +++G CK  +  EA  V   +  +G  P  V Y
Sbjct: 156 GKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTY 215

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            +++ G   +  +  A+ ++  M   G+ P+  +Y+ +I+G+C+I  ++EA  L KEM  
Sbjct: 216 NSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHH 275

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           K      VTY++LI GLC  G+   A  L +EM  +G   +++TY++++   CK  ++ N
Sbjct: 276 KQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDN 335



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/293 (23%), Positives = 124/293 (42%), Gaps = 29/293 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L D     +    A    ++    G SP+  S  + I   C+  +++EA
Sbjct: 207 GIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEA 266

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++    +  ++ T++S                          LI   C  GK+S 
Sbjct: 267 MELLKEMHHKQIIPNVVTYSS--------------------------LIDGLCKSGKISY 300

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +L+ ++ + G  P    ++ ++   C+         LL  M  +   P+ +TY  +I 
Sbjct: 301 ALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIK 360

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC+S K  +A +VF DL  +G+  +   YT +I G C  G   +A  +  +M   G +P
Sbjct: 361 GLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIP 420

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           N  TY  +I    + D  E A++L  EM++  +       N LIA + + G +
Sbjct: 421 NAKTYEIIILSLFKKDENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTGSS 473


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N+L D  +++     A + L    +   +P+P +  + I  LC S  +++A
Sbjct: 411 GLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKA 470

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                ++   GV  ++  + + +   ++  R ++  +L   +I +G L         I  
Sbjct: 471 NEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIG 530

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   KV E   LL  + E G+ P    +   I+ + +             M++    P+
Sbjct: 531 LCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  Y  +I G C     +EA   F  + E+G +PD   Y+ +IH L K G   +A  ++ 
Sbjct: 591 NVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL 650

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           + +  G++P+ + YNS+I G+C+  ++E+A +L+ EML  G     V YNTLI GLC  G
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLG 710

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A  LF+E+ +K +  DV+TY+T+I GYCK G +
Sbjct: 711 EVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNL 747



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/352 (29%), Positives = 175/352 (49%), Gaps = 14/352 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA-MDFLD--STGFSPNP 138
           Q++   ++I   + + ++ G  PDL   N L   L  A+  + A M  +D    G  PN 
Sbjct: 498 QESRYEMAIELLKIMIAN-GVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNA 556

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
           ++   +I    +SG I+ A   F  +   G+  +   +   + G   +  T      +  
Sbjct: 557 HTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKC 616

Query: 199 LIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           ++E G +         I +   +GK  E   +  + L+ G+VP+   +N LIS FC++ +
Sbjct: 617 MLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             + S+L   M+     P+   Y  +INGLCK  +  +A  +F++++E+  VPD V Y+T
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYST 736

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G CK G L +A K++ EMI KG+ P+ Y Y  +I G  +  NLE+A  L  E   K 
Sbjct: 737 IIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS 796

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            G  +  +N+LI   C HG+  EA  LF++M  K +  +++TY  LI  Y K
Sbjct: 797 VGSLS-AFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGK 847



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 169/342 (49%), Gaps = 21/342 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++     L  + V+   +++A++ L    + G  P+       I  LC +  +EEA
Sbjct: 481 GVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEA 540

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + E G+  +  T+ + +    K     +  + + D++ SG          LI+ 
Sbjct: 541 KMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKG 600

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARN 264
            C+ G   E     + +LE GL+P+  A++ +I    +    K+  G   + L T V   
Sbjct: 601 HCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVV-- 658

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F Y  +I+G CK     +A ++++++   G  P+ V+Y T+I+GLCK+G +  AR
Sbjct: 659 --PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKAR 716

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ E+  K L+P+  TY+++I GYC+  NL EA +L  EM+ KG       Y  LI G 
Sbjct: 717 ELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGC 776

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              G  ++A  LF E  QK +   +  +N+LI  +CK GK++
Sbjct: 777 GKEGNLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVI 817



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 148/335 (44%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+L + N     L +  A   A++    +   G  P+ ++  L +   C+    +EA   
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  +   G+  +  T+ + + G IK    +   ++  ++I  G          +I     
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++++   L  ++L  GL P+   +N LI  + +  +  +  ELL  M AR   P  FT
Sbjct: 394 AGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLC S    +A  V + +   G  P+  MY T+I    +      A ++   MI
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+LP+ + YN +I G CR   +EEAK L  +M +KG      TY   I      G   
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            A   F++M   GI  + + Y  LI+G+C  G  V
Sbjct: 574 VAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTV 608



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 152/341 (44%), Gaps = 43/341 (12%)

Query: 94  QWLHSHYGFSPDLVSCNV------LFDSLVEARAFKVAMDFLDST-------GFSPNPNS 140
           Q+LHS+   +  L +  +      + + L++ R  K  ++ LDS        G S N   
Sbjct: 118 QYLHSYSILAIRLCNSGLIHQADNMLEKLLQTR--KPPLEILDSLVRCYREFGGS-NLTV 174

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
            +++I      G + EA   F      G F ++   N+ +   +K +   L WK+Y  ++
Sbjct: 175 FDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMV 234

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
           E+                           +VP+   +  +I   C+  +  +   +L  M
Sbjct: 235 EAK--------------------------IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM 268

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             +   P+ FTY   I GLC++    EA  V   + E+G  PD   YT ++ G CK    
Sbjct: 269 -EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRS 327

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A+ ++  M   GL PN +TY ++I G+ +  N+EEA R+  EM+ +G     VTYN +
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           I G+   G   +A  LF EM   G+  D  TYN LI GY K
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLK 428



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 173/400 (43%), Gaps = 55/400 (13%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFD------SLVEA-RAFKVAMDF 128
           F     +   + ++ R+F+ + S  G  P+ V   +L        + VEA   FK  ++ 
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSS-GIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLE- 619

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
               G  P+  +    I  L ++G  +EA   F K  + GV   +  +NS + G  K   
Sbjct: 620 ---KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            +   +LY +++ +G          LI   C  G+V++  EL  ++ E  LVP+   ++ 
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYST 736

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING--------------------- 278
           +I  +C+  N     +L   M+++  +PD + Y  +I+G                     
Sbjct: 737 IIDGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS 796

Query: 279 -------------LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
                         CK  K +EA  +F+D+ ++   P+ V YT +I    K   + +A +
Sbjct: 797 VGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQ 856

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M  + ++PN  TY S++  Y +I N  +   L K+M  +G     + Y  + +  C
Sbjct: 857 LFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYC 916

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G++ EA  L  +   +GI  +   ++ LI   CKE +I
Sbjct: 917 KEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQI 956



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G ++E   +    + +G  P     N L+    +    G   ++  +MV     PD +TY
Sbjct: 186 GFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             VI   CK    ++   V +++ E+   P+   Y   I GLC+ G + +A ++   M+ 
Sbjct: 246 TNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMME 304

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KGL P+ +TY  ++ G+C+    +EAK + + M   G      TY  LI G    G  +E
Sbjct: 305 KGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           A  + +EM  +G+  +V+TYN +I G  K G++ 
Sbjct: 365 ALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMA 398



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/369 (22%), Positives = 153/369 (41%), Gaps = 46/369 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + + +  SL +    K AM  FL    TG  P+       I   C+ G IE+A
Sbjct: 621 GLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKA 680

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              + ++   G+  +I  +N+ + G  K+       +L+          D++    +I  
Sbjct: 681 SQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDG 740

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPEN---------------------------------- 234
           +C  G ++E ++L  +++  G+ P+                                   
Sbjct: 741 YCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSL 800

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           +AFN LI  FC+        EL   MV +   P+  TY  +I+   K+    EA ++F D
Sbjct: 801 SAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLD 860

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           ++ R  +P+T+ YT+++    ++G       ++ +M  +G+  +   Y  M   YC+   
Sbjct: 861 METRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGK 920

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
             EA +L  + L +G       ++ LI  LC   +      L  EM ++ +     T NT
Sbjct: 921 SLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNT 980

Query: 415 LIQGYCKEG 423
           L+ G+ K G
Sbjct: 981 LLLGFYKSG 989



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 74/317 (23%), Positives = 132/317 (41%), Gaps = 11/317 (3%)

Query: 99   HYGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
            H G +P++V  N L + L    E    +   D ++     P+  +    I   C+SG + 
Sbjct: 689  HNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLT 748

Query: 156  EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQ 207
            EAF  F ++   G+      +   + GC K    +    L+H+  +           LI 
Sbjct: 749  EAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLID 808

Query: 208  AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +FC  GKV E  EL   +++  L P    +  LI  + + +      +L   M  RN  P
Sbjct: 809  SFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIP 868

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            +  TY  ++    +   R +   +F D++ RG   D + Y  +    CK G   +A K+ 
Sbjct: 869  NTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLL 928

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             + + +G+   +  ++++I   C+   +     L  EM  +    ++ T NTL+ G    
Sbjct: 929  NKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKS 988

Query: 388  GRTDEAYHLFEEMAQKG 404
            G  DEA  +   M + G
Sbjct: 989  GNEDEASKVLGVMQRLG 1005



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 22/242 (9%)

Query: 79   FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
            F + Q   + S+  F  L   +     ++    LFD +V+ +              +PN 
Sbjct: 789  FHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKK-------------LTPNI 835

Query: 139  NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
             +  + I    ++ ++EEA   F  ++   +  +  T+ S LL   +I     +  L+ D
Sbjct: 836  VTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKD 895

Query: 199  L---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
            +         I  G +  A+C +GK  E  +LL + L +G+  E+  F+ LI   C++K 
Sbjct: 896  MEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQ 955

Query: 250  FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               V ELL  M     +  + T   ++ G  KS    EA +V   ++  G+VP ++  T 
Sbjct: 956  ISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTD 1015

Query: 310  VI 311
             I
Sbjct: 1016 SI 1017


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 166/334 (49%), Gaps = 14/334 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PDLV+ ++L +        A +F V    L   G+ PN   L   ++ LC  G +++
Sbjct: 162 GIEPDLVTLSILINCFCHLGQMAFSFSVLGKIL-KLGYQPNTIILTTLMKGLCLKGEVKK 220

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           +     K+   G   +  ++ + L G  KI  T    KL           D++    +I 
Sbjct: 221 SLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIID 280

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C D  V+E Y+   ++   G+ P+   ++ LI  FC          LL+ M  +N  P
Sbjct: 281 GLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINP 340

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +TY  +I+ LCK  K  EA  +   + + G  P+ V Y+T++ G C +G + +A++++
Sbjct: 341 DVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIF 400

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+   + P+  +YN MI+G C+  +++EA  L +EML K     TVTYN+LI GLC  
Sbjct: 401 HAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKS 460

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           GR   A  L +E+  +G   DVITY +L+ G CK
Sbjct: 461 GRITSALDLMKELHHRGQPADVITYTSLLDGLCK 494



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  + VS   L + L +    + A+  L   +     P+       I  LC+  L+ EA
Sbjct: 232 GFQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEA 291

Query: 158 FCAFSKLKEMGVFGSIKTWNS---------ALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           +  ++++   G+F  + T+++          L+G   +     +  +  D+     LI A
Sbjct: 292 YDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDA 351

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK+ E   LL  + ++G+ P    ++ L+  +C         ++ H MV     P 
Sbjct: 352 LCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPS 411

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +INGLCK +   EA  +  ++  +  VP+TV Y ++I GLCK G +  A  +  
Sbjct: 412 VCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMK 471

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+ H+G   +  TY S++ G C+  NL++A  L  +M ++G      TY  LI GLC   
Sbjct: 472 ELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGA 531

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R   A  LF+ +  KG   DV TYN +I G CKEG +
Sbjct: 532 RLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGML 568



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 161/339 (47%), Gaps = 16/339 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P ++    +  SLV+ + F  A+     ++  G  P+  +L + I C C  G +  +F 
Sbjct: 129 TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILINCFCHLGQMAFSFS 188

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES----------GYLIQA 208
              K+ ++G   +     + + G C+K +    +   +HD + +          G L+  
Sbjct: 189 VLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLH--FHDKVVAQGFQMNQVSYGTLLNG 246

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+     +LLR + +    P+   +N +I   C+ K      +    M +R   PD
Sbjct: 247 LCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPD 306

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C + + + A+ + N++  +   PD   YT +I  LCK G L +A+ +  
Sbjct: 307 VITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLG 366

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  +G+ PN  TY++++ GYC +  +  AK++   M+      +  +YN +I GLC   
Sbjct: 367 VMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGK 426

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             DEA +L  EM  K +  + +TYN+LI G CK G+I +
Sbjct: 427 SVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITS 465



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 156/326 (47%), Gaps = 12/326 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V  N + D L + +    A DF   ++S G  P+  +    I   C +G +  AF  
Sbjct: 270 PDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSL 329

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +++    +   + T+   +    K  +      L   + + G          L+  +C 
Sbjct: 330 LNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCL 389

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V    ++   +++  + P   ++N +I+  C+ K+      LL  M+ +N  P+  T
Sbjct: 390 VGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVT 449

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCKS +   A  +  +L  RG   D + YT+++ GLCK   L  A  ++ +M 
Sbjct: 450 YNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMK 509

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ PN+YTY ++I G C+   L+ A++L + +L KG      TYN +I GLC  G  D
Sbjct: 510 ERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLD 569

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQ 417
           EA  +  +M   G   D +T+  +I+
Sbjct: 570 EALAMKSKMEDNGCIPDAVTFEIIIR 595



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 154/328 (46%), Gaps = 13/328 (3%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F+  ++S  G  PD+++ + L      A     A   L+       +P+  +  + I  L
Sbjct: 294 FYTEMNSR-GIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDAL 352

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------ 202
           C+ G ++EA      + + GV  ++ T+++ + G   +       +++H ++++      
Sbjct: 353 CKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSV 412

Query: 203 ---GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +I   C    V E   LLR++L   +VP    +N LI   C+        +L+  
Sbjct: 413 CSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKE 472

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           +  R +  D  TY  +++GLCK++   +A  +F  +KERG  P+   YT +I GLCK   
Sbjct: 473 LHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGAR 532

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L +A+K++  ++ KG   + YTYN MI G C+   L+EA  +  +M D G     VT+  
Sbjct: 533 LKNAQKLFQHILVKGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEI 592

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           +I  L      D+A  L  EM  KG+  
Sbjct: 593 IIRSLFEKDENDKAEKLLHEMIAKGLLH 620



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 87/175 (49%), Gaps = 2/175 (1%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           VS+    ++ RN  P    + +++  L K +    A  +   ++ +G  PD V  + +I+
Sbjct: 117 VSQFNGMLLMRN-TPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILIN 175

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C +G +  +  +  +++  G  PN     +++ G C    ++++   H +++ +G+  
Sbjct: 176 CFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQM 235

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             V+Y TL+ GLC  G T  A  L   +  +    DV+ YNT+I G CK+ K+VN
Sbjct: 236 NQVSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKD-KLVN 289



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 68/138 (49%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN +      P  + +  ++  L KM     A  +  +M  KG+ P+  T + +I
Sbjct: 115 DAVSQFNGMLLMRNTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSILI 174

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C +  +  +  +  ++L  GY   T+   TL+ GLCL G   ++ H  +++  +G  
Sbjct: 175 NCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQGFQ 234

Query: 407 RDVITYNTLIQGYCKEGK 424
            + ++Y TL+ G CK G+
Sbjct: 235 MNQVSYGTLLNGLCKIGE 252


>gi|147780655|emb|CAN66818.1| hypothetical protein VITISV_004776 [Vitis vinifera]
          Length = 1037

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 177/373 (47%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L SCN L ++LV   E          +   G  P+   + + +   C+ G ++EA
Sbjct: 186 GRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEA 245

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI--------------------------------- 184
                K++ +GV  +I T++S + G +                                 
Sbjct: 246 AGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKG 305

Query: 185 -----KIDRTDLVWK-------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                K+D  + V +       L  D    G LI  +C  GK+ +   LL ++L  GL  
Sbjct: 306 YCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKT 365

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
                N LI+ +C++        ++  MV  N  PD+++Y  +++G C+     EA+ + 
Sbjct: 366 NLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLC 425

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + + + G  P  + Y T++ GLC++G   DA ++W  M+  G+ P+E  Y++++ G  ++
Sbjct: 426 DKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKM 485

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           +N E A  L K++L +G+ ++ +T+NT+I+GLC  G+  EA  +F++M   G   D ITY
Sbjct: 486 ENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITY 545

Query: 413 NTLIQGYCKEGKI 425
            TLI GYCK   +
Sbjct: 546 RTLIDGYCKASNV 558



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 165/326 (50%), Gaps = 9/326 (2%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAF 158
            SP +   N L   L ++R      D L   G    +PN  +    I   C+ G++++AF
Sbjct: 573 ISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAF 632

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC------ND 212
            ++ ++ E G+  +I   ++ + G  ++ R D    L   +++ G+     C        
Sbjct: 633 SSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRY 692

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
             + +  + L +  +  L+P N  +N  I+  C+             +  +   PDNFTY
Sbjct: 693 AAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTY 752

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G   +    EA+R+ +++  RG VP+ V Y  +I+GLCK   +  A++++ ++  
Sbjct: 753 CTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQ 812

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KGL PN  TYN++I GYC+I N++ A +L  +M+++G   + VTY+ LI GLC HG  + 
Sbjct: 813 KGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIER 872

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQG 418
           +  L  +M + G+   +I Y TL+QG
Sbjct: 873 SMKLLNQMIKAGVDSKLIEYCTLVQG 898



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 111/421 (26%), Positives = 192/421 (45%), Gaps = 36/421 (8%)

Query: 35  ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQ 94
           ES     E+  ++C++   +       +S + +F F+D +        + N   S+ FFQ
Sbjct: 35  ESHPAPPELVSRICRLVLLR---RCNAISKL-NFVFSDDIVDAVLRNLRLNPTASLGFFQ 90

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---------------------- 132
           ++     F P++ S   L   L   R +     +L+                        
Sbjct: 91  FVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYR 150

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
            F+ +P   ++ ++   E GL + A   F  + + G   S+++ NS L   +K   T   
Sbjct: 151 EFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTA 210

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             +Y  +I  G          ++ AFC DGKV E    ++++   G+ P    ++ LI+ 
Sbjct: 211 HYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLING 270

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVP 302
           +    +      +L  M  +  + +  TY  +I G CK  K  EA +V   ++E    VP
Sbjct: 271 YVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVP 330

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   Y  +I G C+ G + DA ++  EM+  GL  N +  NS+I+GYC+   + EA+ + 
Sbjct: 331 DERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVI 390

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+D      + +YNTL+ G C  G T EA++L ++M Q+GI   V+TYNTL++G C+ 
Sbjct: 391 TRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRV 450

Query: 423 G 423
           G
Sbjct: 451 G 451



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 161/341 (47%), Gaps = 13/341 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S  G S ++V+  +L     +      A KV     +     P+  +  + I   C +G 
Sbjct: 288 SEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGK 347

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLV------WKLYHDLIESGY 204
           I++A     ++  +G+  ++   NS + G  K   I   + V      W L  D      
Sbjct: 348 IDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNT 407

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  +C +G  SE + L  ++L++G+ P    +N L+   C    F    ++ H M+   
Sbjct: 408 LLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKXG 467

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            APD   Y  +++GL K      A  ++ D+  RG+    + + T+I GLCKMG + +A 
Sbjct: 468 VAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAE 527

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ +M   G  P+  TY ++I GYC+  N+ +A ++   M  +    +   YN+LI+GL
Sbjct: 528 EIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSIEMYNSLISGL 587

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               R  E   L  EM  +G+  +++TY  LI G+CKEG +
Sbjct: 588 FKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGML 628



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 12/347 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           +  + +       PD  +  VL D          A+  LD     G   N       I  
Sbjct: 317 KVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLING 376

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C+ G I EA    +++ +  +     ++N+ L G  +   T   + L   +++ G    
Sbjct: 377 YCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPT 436

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L++  C  G   +  ++   +++ G+ P+   ++ L+    + +NF   S L  
Sbjct: 437 VLTYNTLLKGLCRVGAFDDALQIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWK 496

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            ++AR       T+  +I+GLCK  K +EA  +F+ +K+ G  PD + Y T+I G CK  
Sbjct: 497 DILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKAS 556

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +G A K+   M  + + P+   YNS+I G  +   L E   L  EM  +G     VTY 
Sbjct: 557 NVGQAFKVKGAMEREXISPSIEMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYG 616

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LI G C  G  D+A+  + EM + G+  ++I  +T++ G  + G+I
Sbjct: 617 ALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRI 663



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/333 (24%), Positives = 136/333 (40%), Gaps = 41/333 (12%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             P+  S    +   C  G   EAF    K+ + G+  ++ T+N+ L G  ++   D   
Sbjct: 398 LKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDAL 457

Query: 194 KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           +++H +++ G          L+              L + +L  G       FN +IS  
Sbjct: 458 QIWHLMMKXGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGL 517

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+        E+   M     +PD  TY  +I+G CK+    +A++V   ++     P  
Sbjct: 518 CKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREXISPSI 577

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            MY ++I GL K   L +   +  EM  +GL PN  TY ++I G+C+   L++A   + E
Sbjct: 578 EMYNSLISGLFKSRRLVEXTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFE 637

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD---------------- 408
           M + G     +  +T+++GL   GR DEA  L ++M   G F D                
Sbjct: 638 MTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQK 697

Query: 409 ----------------VITYNTLIQGYCKEGKI 425
                            I YN  I G CK GK+
Sbjct: 698 IADSLDESCKTFLLPNNIVYNIAIAGLCKTGKV 730



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 95/192 (49%), Gaps = 1/192 (0%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T F+ ++  + EK        +   M    R P   +   ++N L K+ +   A+ V+  
Sbjct: 157 TVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQ 216

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G VPD  M + +++  CK G + +A     +M + G+ PN  TY+S+I+GY  + +
Sbjct: 217 MIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGD 276

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYN 413
           +E AK + K M +KG     VTY  LI G C   + DEA  +   M ++  +  D   Y 
Sbjct: 277 VEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYG 336

Query: 414 TLIQGYCKEGKI 425
            LI GYC+ GKI
Sbjct: 337 VLIDGYCRTGKI 348



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 113/248 (45%), Gaps = 9/248 (3%)

Query: 187 DRTDLVWK----LYHDLIES----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           DR +++W     +Y +   S      +++ +   G       +   + + G +P   + N
Sbjct: 136 DRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCN 195

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            L++   +         +   M+     PD F    ++N  CK  K  EA      ++  
Sbjct: 196 SLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENL 255

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  P+ V Y ++I+G   +G +  A+ +   M  KG+  N  TY  +I GYC+   ++EA
Sbjct: 256 GVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEA 315

Query: 359 KRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           +++ + M ++         Y  LI G C  G+ D+A  L +EM + G+  ++   N+LI 
Sbjct: 316 EKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLIN 375

Query: 418 GYCKEGKI 425
           GYCK G+I
Sbjct: 376 GYCKRGEI 383



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 9/195 (4%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
            +N A+ G  K  + D   + +  L   G+         LI  +   G V E + L  ++
Sbjct: 716 VYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEM 775

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L  GLVP    +N LI+  C+ +N  R   L H +  +   P+  TY  +I+G CK    
Sbjct: 776 LRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNM 835

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A+++ + + E G  P  V Y+ +I+GLCK G +  + K+  +MI  G+      Y ++
Sbjct: 836 DAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTL 895

Query: 346 IHGYCRIDNLEEAKR 360
           + G  +  N  E  +
Sbjct: 896 VQGGFKTSNYNEMSK 910


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 164/338 (48%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P +V+ N+L +          AF +    L   G+ P   +    I  +C +G ++E
Sbjct: 89  GITPTIVTFNILVNCYCHLGEMTFAFSIFAKIL-KLGYHPTTITFNTLINGICLNGKLKE 147

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A      +  +G      ++ + + G  KI  T    ++           D++    +I 
Sbjct: 148 ALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIIN 207

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C D  VS+ Y+L  +++   + P+   FN LI  FC          L H MV +N  P
Sbjct: 208 SLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINP 267

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +T+  +++ LCK      A  +   + ++G +PD V Y++++ G C +  +  A+ ++
Sbjct: 268 DVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVF 327

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G+ P+ ++YN MI+G  +I  ++EA  L KEM  KG    TVTYN+LI GLC  
Sbjct: 328 STMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKL 387

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR   A+ L +EM   GI  D++TYN+LI   CK   I
Sbjct: 388 GRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHI 425



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 176/357 (49%), Gaps = 17/357 (4%)

Query: 84  NNVLLSIRFFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
           N + L+ +  + LH H      GF  D VS   L + L +    + A+  L         
Sbjct: 137 NGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVN 196

Query: 139 NSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
             + +Y   I  LC+   + +A+  +S++    +   + T+NS +LG   + +    + L
Sbjct: 197 TDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGL 256

Query: 196 YHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +H+++             L+ A C DG ++    +L  +++ G++P+   ++ L+  +C 
Sbjct: 257 FHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCL 316

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                +   +  TM     AP   +Y  +INGL K +   EA  +F ++  +G  PDTV 
Sbjct: 317 VNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTVT 376

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y ++I GLCK+G +  A ++  EM + G+  +  TYNS+I   C+  ++++A  L K++ 
Sbjct: 377 YNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIK 436

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           D+G   +  TYN LI GLC  GR   A  +F+++  KG   +  TYN +I G CKEG
Sbjct: 437 DQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEG 493



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 140/320 (43%), Gaps = 18/320 (5%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N L          K A            +P+  +  + +  LC+ G I  A 
Sbjct: 230 ISPDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAK 289

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
              + + + GV   + T++S + G   ++  +    ++  +   G          +I   
Sbjct: 290 NMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGL 349

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS---ELLHTMVARNRA 266
                V E   L +++   G+ P+   +N LI   C+    GR+S   +L+  M      
Sbjct: 350 GKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCK---LGRISYAWQLVDEMHNNGIP 406

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            D  TY  +I+ LCK+    +A  +   +K++G  P    Y  +I GLCK G L +A+ +
Sbjct: 407 ADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDV 466

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + +++ KG   N +TYN MI+G C+     EA+ L  +M + G     VTY T+I  L  
Sbjct: 467 FQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFR 526

Query: 387 HGRTDEAYHLFEEMAQKGIF 406
               ++A  L  EM  +G+ 
Sbjct: 527 KDENEKAEKLLREMIIRGLL 546



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 2/217 (0%)

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN--FGRVSELLHTMVARNRAPD 268
           ND  V+       ++L     P    FNK++    +  N  +     L H +  +   P 
Sbjct: 34  NDFDVNNDVSSFHRMLRMRPTPSIVEFNKILGSIVKANNNHYTTAISLSHQLELKGITPT 93

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++N  C   +   A+ +F  + + GY P T+ + T+I+G+C  G L +A     
Sbjct: 94  IVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITFNTLINGICLNGKLKEALHFHD 153

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +I  G   ++ +Y ++I+G C+I     A ++ K++  K      V YN +I  LC   
Sbjct: 154 HVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDK 213

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +AY L+ EM  K I  DV+T+N+LI G+C  G++
Sbjct: 214 AVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQL 250



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 114/248 (45%), Gaps = 12/248 (4%)

Query: 101 GFSPDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + L D    + E    K     +   G +P+ +S  + I  L +  +++EA
Sbjct: 299 GVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEA 358

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++   G+     T+NS + G  K+ R    W+L  ++  +G          LI  
Sbjct: 359 LSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDV 418

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +  + +   L++++ + G+ P    +N LI   C+        ++   ++ +  + +
Sbjct: 419 LCKNHHIDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVN 478

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +INGLCK     EA  + + ++  G +PD V Y T+I  L +      A K+  
Sbjct: 479 AWTYNIMINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLR 538

Query: 329 EMIHKGLL 336
           EMI +GLL
Sbjct: 539 EMIIRGLL 546



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 39/177 (22%), Positives = 74/177 (41%), Gaps = 16/177 (9%)

Query: 40  YTEIAKQVCKITRTKPRWE-------QTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           Y  +   +CK+ R    W+         + +DI ++N        + L + +++  +I  
Sbjct: 377 YNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNS-----LIDVLCKNHHIDKAIAL 431

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLC 149
            + +    G  P + + N+L D L +    K A D        G+S N  +  + I  LC
Sbjct: 432 VKKIKDQ-GIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLC 490

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
           + GL  EA    SK++  G+     T+ + +    + D  +   KL  ++I  G L+
Sbjct: 491 KEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRGLLL 547


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/397 (27%), Positives = 185/397 (46%), Gaps = 17/397 (4%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLK---QQNNVLLSIRFFQWLHS 98
           + + +CK  + +P     +L D+P++    D   F   ++   ++ +V  ++R  + L  
Sbjct: 205 LIRALCKAHQLRPAI--LMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRI-KELMV 261

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-DSTGFSPNPNSLELYIQCLCESGLIEEA 157
             G     VS NVL + L +    + A+ F+ +  GF P+  +    +  LC +G I++ 
Sbjct: 262 ESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQG 321

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
                 + E G    + T+NS + G  K+   D   ++ H ++             LI  
Sbjct: 322 LEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGT 381

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +  V    EL R +   G++P+   FN LI   C   N     EL   M  +   PD
Sbjct: 382 LCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPD 441

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I  LC  R+  EA  +  +++  G   + V+Y T+I GLCK   +GDA  ++ 
Sbjct: 442 EFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFD 501

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+  +  TYN++I+G C+   +EEA +L  +M+ +G      TY T++   C  G
Sbjct: 502 QMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQG 561

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A  + + M   G   D++TY TLI G CK G++
Sbjct: 562 DIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRV 598



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 175/381 (45%), Gaps = 27/381 (7%)

Query: 72  DPLFF---REFLKQQN----NVLLSI-------RFFQWLHSHY---GFSPDLVSCNVLFD 114
           +PLF    R+F  + +    NV LS+       +  + LHS        PD+ + N+L  
Sbjct: 148 NPLFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIR 207

Query: 115 SLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           +L +A   + A+  L+     G  P+  +    +Q   E   +E A      + E G   
Sbjct: 208 ALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCEL 267

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYH-------DLIESGYLIQAFCNDGKVSEGYELLRQ 224
           +  + N  + G  K  R +   +  +       D +    L+   C  G + +G E++  
Sbjct: 268 TSVSVNVLVNGLCKEGRIEEALRFIYEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDF 327

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +LE G   +   +N LIS  C+        E+LH MV+R+  P+  TY  +I  LCK   
Sbjct: 328 MLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENH 387

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A  +   L  +G +PD   + ++I GLC       A +++ EM  KG  P+E+TY+ 
Sbjct: 388 VEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSI 447

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I   C    L+EA  L KEM   G     V YNTLI GLC + R  +A  +F++M   G
Sbjct: 448 LIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLG 507

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           + R  +TYNTLI G CK  ++
Sbjct: 508 VSRSSVTYNTLINGLCKSKRV 528



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 152/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D+ + N L   L +      A++ L    S    PN  +    I  LC+   +E A
Sbjct: 332 GFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENHVEAA 391

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   GV   + T+NS + G       ++  +L+ ++ E G          LI++
Sbjct: 392 TELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIES 451

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C++ ++ E   LL+++   G       +N LI   C+    G   ++   M     +  
Sbjct: 452 LCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRS 511

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +INGLCKS++  EA ++ + +   G  PD   YTT++   C+ G +  A  +  
Sbjct: 512 SVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQ 571

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  P+  TY ++I G C+   ++ A +L + +  KG   T   YN +I  LC   
Sbjct: 572 NMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRK 631

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           RT EA  LF EM +KG   DVITY  + +G C  G
Sbjct: 632 RTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGG 666



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 160/355 (45%), Gaps = 16/355 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L ++N+V  +    + L S  G  PD+ + N L   L      ++AM+  +     G  P
Sbjct: 382 LCKENHVEAATELARVLTSK-GVLPDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDP 440

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +  + I+ LC    ++EA     +++  G   ++  +N+ + G  K +R      ++
Sbjct: 441 DEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIF 500

Query: 197 HDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
             +         +    LI   C   +V E  +L+ Q++ +GL P+   +  ++  FC++
Sbjct: 501 DQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQ 560

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
            +  R ++++  M      PD  TY  +I GLCK+ +   A ++   ++ +G V     Y
Sbjct: 561 GDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAY 620

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEML 366
             VI  LCK     +A +++ EM+ KG  P+  TY  +  G C     ++EA     EML
Sbjct: 621 NPVIQALCKRKRTKEAMRLFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEML 680

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +KG      ++  L  GLC     D    L   + +KG F    +  ++I+G+ K
Sbjct: 681 EKGILPEFPSFGFLAEGLCSLSMEDTLIQLINMVMEKGRFSQ--SETSIIRGFLK 733



 Score = 61.6 bits (148), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 78/193 (40%), Gaps = 2/193 (1%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           + F++L+ +     +F  +  LL  M +     D  T+   +     S            
Sbjct: 93  SVFHELLRQLARAGSFDSMLTLLRQMHSSKIPVDESTFLIFLETYATSHHLHAEINPLFL 152

Query: 295 LKERGYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           L ER +   PDT  Y   +  L K   L     +  +M+   + P+  T+N +I   C+ 
Sbjct: 153 LMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKA 212

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             L  A  + ++M + G      T+ TL+ G       + A  + E M + G     ++ 
Sbjct: 213 HQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSV 272

Query: 413 NTLIQGYCKEGKI 425
           N L+ G CKEG+I
Sbjct: 273 NVLVNGLCKEGRI 285


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 198/406 (48%), Gaps = 24/406 (5%)

Query: 40  YTEIAKQVCKITRTKPRWE-----QTLLSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +      T L  IP+ F++N      + L  +N    ++   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN---ILLKGLCDENRSQEALELL 185

Query: 94  QWLHSHYG-FSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           Q +    G   PD+VS   + +   +     +A+    + LD  G  PN  +    I  L
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDR-GILPNVVTYSSIIAAL 244

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW---KLYHDLIESGY 204
           C++  +++A    + + + GV  + +T+NS + G C      + +    K++ D +E   
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+   C +G+ +E  ++   + + GL PE T +  L+  +  K     +  LL  
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P+++ +  +I    K  K  +A  VF+ ++++G  PDTV Y TVI  LCK G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA + + +MI + L P    YNS+IH  C  D  ++AK L  EMLD+G    T+ +N+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I   C  GR  E+  LF+ M + G+  D+ITY+TLI GYC  GK+
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 164/350 (46%), Gaps = 23/350 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLE 142
           +I F + +HS  G  PD+V+ N L D L       EAR      D +   G  P   +  
Sbjct: 288 AIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARKM---FDSMTKRGLKPEITTYG 343

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----KIDRTDLVWK--- 194
             +Q     G + E       +   G+  +   +  ++L C      K+D+  LV+    
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF--SILICAYAKQGKVDQAMLVFSKMR 401

Query: 195 ---LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
              L  D +  G +I   C  G+V +      Q++++ L P N  +N LI   C    + 
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWD 461

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  EL+  M+ R    D   +  +I+  CK  + +E+ ++F+ +   G  PD + Y+T+I
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G C  G + +A K+   M+  G+ P+  TYN++I+GYC+I  +E+A  L +EM   G  
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +TYN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 12/264 (4%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQ 224
           T+   +  C    R DL +    ++I+ G+         L++  C D + S+  ++ LR+
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVINGLCKS 282
           + + G +P   ++N L+   C++       ELL  M     +  PD  +Y  VING  K 
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +AY  ++++ +RG +P+ V Y+++I  LCK   +  A ++   M+  G++PN  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           NS++HGYC     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F+ M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
           +G+  ++ TY TL+QGY  +G +V
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALV 356



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESG 152
           +  G  P++ S N+L   L +    + A++ L     D     P+  S    I    + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------- 205
            +++A+  + ++ + G+  ++ T++S +    K    D   ++   ++++G +       
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 206 --IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
             +  +C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  ++ G       +E + + + +   G  P+  +++ +I    K G +  A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +GL P+  TY ++I   C+   +E+A R  ++M+D+      + YN+LI  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC+  + D+A  L  EM  +GI  D I +N++I  +CKEG+++
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +    I  LC+SG +E+A   F ++ +  +      +NS +      D+ D  
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P+   ++ LI  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C        ++LL +MV+    PD  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y  ++ GL +      A++++  +   G      TYN ++HG C+ +  +EA R+ +
Sbjct: 584 IITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +        T T+N +I  L   GR DEA  LF  ++  G+  DV TY+ + +   ++G
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I   C + +    +    ++ ++G+  D + +T ++ GLC      DA  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 327 WF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIAG 383
               M   G +PN ++YN ++ G C  +  +EA  L + M D G       V+Y T+I G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
               G  D+AY  + EM  +GI  +V+TY+++I   CK
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGL-CKMGWLG-----DARKMWFEMIHKG---LLP 337
           +A  VF++L  RG           I+GL C +  +       A   +  M   G   + P
Sbjct: 37  DARHVFDELLRRGR-------GASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTP 89

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL- 396
           N  TY  +I   C    L+        ++ KG+    + +  L+ GLC   RT +A  + 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              M Q G   +V +YN L++G C E +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENR 177


>gi|297800104|ref|XP_002867936.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297313772|gb|EFH44195.1| hypothetical protein ARALYDRAFT_492917 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 817

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/390 (27%), Positives = 180/390 (46%), Gaps = 47/390 (12%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPN 139
           +++   L++  F  L ++ G  P   +CN+L  SLV A  F+   +       G SP+  
Sbjct: 195 KRDGCYLALDVFPVL-ANKGMFPSKTTCNILLTSLVRATEFQKCCEAFHVVCKGVSPDVY 253

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                I   C+ G +EEA   FSK++E GV  ++ T+N+ + G     R D  +     +
Sbjct: 254 LFTTAINAFCKGGKVEEAIELFSKMEEAGVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKM 313

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +E G          L++      ++ + Y +L+++ E G  P    +N LI    E  + 
Sbjct: 314 VERGVEPTLITYSILVKGLTKAKRIGDAYCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSL 373

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKS-----RKRL------------------- 286
            +  E+   MV++  +  + TY  +I G CKS      +RL                   
Sbjct: 374 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSGQADIAERLLKEMLSIGFNVNQGSFTSV 433

Query: 287 -----------EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
                       A R   ++  R   P   + TT+I GLCK G    A ++W + ++KG 
Sbjct: 434 ICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKAVELWLKFLNKGF 493

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           L +  T N+++HG C    LEE  R+ KE+L +G+    V+YNTLI+G C + + DEA+ 
Sbjct: 494 LVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGFVMDRVSYNTLISGCCGNKKLDEAFM 553

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +EM +KG+  D  TY+ LI+G     K+
Sbjct: 554 FMDEMVKKGLKPDNYTYSILIRGLLNMNKV 583



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 170/376 (45%), Gaps = 53/376 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+++  N L DSL+EA +   A+   D + S G S   ++    I+  C+SG   +A
Sbjct: 352 GFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKSG---QA 408

Query: 158 FCAFSKLKEM---------GVFGSI-------KTWNSALL-------------------- 181
             A   LKEM         G F S+         ++SAL                     
Sbjct: 409 DIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPGGGLLTTL 468

Query: 182 --GCIKIDRTDLVWKLYHDLIESGYLI---------QAFCNDGKVSEGYELLRQVLEDGL 230
             G  K  +     +L+   +  G+L+            C  GK+ EG+ + +++L  G 
Sbjct: 469 ISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQKEILGRGF 528

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           V +  ++N LIS  C  K        +  MV +   PDN+TY  +I GL    K  EA +
Sbjct: 529 VMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQ 588

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            + D K  G +PD   Y+ +I G CK     + +K++ EM+   L PN   YN +I  YC
Sbjct: 589 FWGDCKRNGMIPDVYTYSVMIDGCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYC 648

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R   L  A  L ++M  KG    + TY +LI G+ +  R +EA  L EEM  +G+  +V 
Sbjct: 649 RSGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVF 708

Query: 411 TYNTLIQGYCKEGKIV 426
            Y  LI GY K G++V
Sbjct: 709 HYTALIDGYGKLGQMV 724



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 156/333 (46%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N + D L  +  +  A  F +     G  P   +  + ++ L ++  I +A
Sbjct: 282 GVVPNVVTYNTVIDGLGMSGRYDEAFMFKEKMVERGVEPTLITYSILVKGLTKAKRIGDA 341

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK-------IDRTDLVWKLYHDLIESGY--LIQA 208
           +C   ++ E G   ++  +N+ +   I+       I+  DL+      L  S Y  LI+ 
Sbjct: 342 YCVLKEMTEKGFPPNVIVYNNLIDSLIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKG 401

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G+      LL+++L  G      +F  +I   C    F      +  M+ RN +P 
Sbjct: 402 YCKSGQADIAERLLKEMLSIGFNVNQGSFTSVICLLCSHHMFDSALRFVGEMLLRNMSPG 461

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                 +I+GLCK  K  +A  ++     +G++ DT     ++HGLC+ G L +  ++  
Sbjct: 462 GGLLTTLISGLCKHGKHSKAVELWLKFLNKGFLVDTKTSNALLHGLCEAGKLEEGFRIQK 521

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E++ +G + +  +YN++I G C    L+EA     EM+ KG      TY+ LI GL    
Sbjct: 522 EILGRGFVMDRVSYNTLISGCCGNKKLDEAFMFMDEMVKKGLKPDNYTYSILIRGLLNMN 581

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           + +EA   + +  + G+  DV TY+ +I G CK
Sbjct: 582 KVEEAIQFWGDCKRNGMIPDVYTYSVMIDGCCK 614



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 145/334 (43%), Gaps = 24/334 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D  + N L   L EA      F++  + L   GF  +  S    I   C +  ++E
Sbjct: 492 GFLVDTKTSNALLHGLCEAGKLEEGFRIQKEIL-GRGFVMDRVSYNTLISGCCGNKKLDE 550

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           AF    ++ + G+     T++  + G + +++ +   + + D   +G          +I 
Sbjct: 551 AFMFMDEMVKKGLKPDNYTYSILIRGLLNMNKVEEAIQFWGDCKRNGMIPDVYTYSVMID 610

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   +  EG +L  +++ + L P    +N LI  +C         EL   M  +  +P
Sbjct: 611 GCCKAERTEEGQKLFDEMMSNNLQPNTVVYNHLIGAYCRSGRLSMALELREDMKHKGISP 670

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           ++ TY  +I G+    +  EA  +  +++  G  P+   YT +I G  K+G +     + 
Sbjct: 671 NSATYTSLIKGMSIISRVEEAKLLLEEMRMEGLEPNVFHYTALIDGYGKLGQMVKVECLL 730

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  K + PN+ TY  MI GY R  N+ EA RL  EM +KG    ++TY   I G    
Sbjct: 731 REMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLHEMREKGIVPDSITYKEFIYGYLKQ 790

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G   +A+        KG   D   Y  +I+G+ K
Sbjct: 791 GGVLQAF--------KG--SDEENYAAIIEGWNK 814


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 198/406 (48%), Gaps = 24/406 (5%)

Query: 40  YTEIAKQVCKITRTKPRWE-----QTLLSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +      T L  IP+ F++N      + L  +N    ++   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN---ILLKGLCDENRSQEALELL 185

Query: 94  QWLHSHYG-FSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           Q +    G   PD+VS   + +   +     +A+    + LD  G  PN  +    I  L
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDR-GILPNVVTYSSIIAAL 244

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW---KLYHDLIESGY 204
           C++  +++A    + + + GV  + +T+NS + G C      + +    K++ D +E   
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+   C +G+ +E  ++   + + GL PE T +  L+  +  K     +  LL  
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P+++ +  +I    K  K  +A  VF+ ++++G  PDTV Y TVI  LCK G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA + + +MI + L P    YNS+IH  C  D  ++AK L  EMLD+G    T+ +N+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I   C  GR  E+  LF+ M + G+  D+ITY+TLI GYC  GK+
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 164/350 (46%), Gaps = 23/350 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLE 142
           +I F + +HS  G  PD+V+ N L D L       EAR      D +   G  P   +  
Sbjct: 288 AIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARKM---FDSMTKRGLKPEITTYG 343

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----KIDRTDLVWK--- 194
             +Q     G + E       +   G+  +   +  ++L C      K+D+  LV+    
Sbjct: 344 TLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF--SILICAYAKQGKVDQAMLVFSKMR 401

Query: 195 ---LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
              L  D +  G +I   C  G+V +      Q++++ L P N  +N LI   C    + 
Sbjct: 402 QQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWD 461

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  EL+  M+ R    D   +  +I+  CK  + +E+ ++F+ +   G  PD + Y+T+I
Sbjct: 462 KAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLI 521

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G C  G + +A K+   M+  G+ P+  TYN++I+GYC+I  +E+A  L +EM   G  
Sbjct: 522 DGYCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVS 581

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +TYN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 582 PDIITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 12/264 (4%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQ 224
           T+   +  C    R DL +    ++I+ G+         L++  C D + S+  ++ LR+
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVINGLCKS 282
           + + G +P   ++N L+   C++       ELL  M     +  PD  +Y  VING  K 
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +AY  ++++ +RG +P+ V Y+++I  LCK   +  A ++   M+  G++PN  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           NS++HGYC     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F+ M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
           +G+  ++ TY TL+QGY  +G +V
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALV 356



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESG 152
           +  G  P++ S N+L   L +    + A++ L     D     P+  S    I    + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------- 205
            +++A+  + ++ + G+  ++ T++S +    K    D   ++   ++++G +       
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 206 --IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
             +  +C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  ++ G       +E + + + +   G  P+  +++ +I    K G +  A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +GL P+  TY ++I   C+   +E+A R  ++M+D+      + YN+LI  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC+  + D+A  L  EM  +GI  D I +N++I  +CKEG+++
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +    I  LC+SG +E+A   F ++ +  +      +NS +      D+ D  
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P+   ++ LI  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C        ++LL +MV+    PD  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y  ++ GL +      A++++  +   G      TYN ++HG C+ +  +EA R+ +
Sbjct: 584 IITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +        T T+N +I  L   GR DEA  LF  ++  G+  DV TY+ + +   ++G
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 3/158 (1%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I   C + +    +    ++ ++G+  D + +T ++ GLC      DA  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 327 WF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIAG 383
               M   G +PN ++YN ++ G C  +  +EA  L + M D G       V+Y T+I G
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVING 208

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
               G  D+AY  + EM  +GI  +V+TY+++I   CK
Sbjct: 209 FFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGL-CKMGWLG-----DARKMWFEMIHKG---LLP 337
           +A  VF++L  RG           I+GL C +  +       A   +  M   G   + P
Sbjct: 37  DARHVFDELLRRGR-------GASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTP 89

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL- 396
           N  TY  +I   C    L+        ++ KG+    + +  L+ GLC   RT +A  + 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              M Q G   +V +YN L++G C E +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENR 177


>gi|357125910|ref|XP_003564632.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 1 [Brachypodium distachyon]
 gi|357125912|ref|XP_003564633.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like isoform 2 [Brachypodium distachyon]
          Length = 704

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 185/383 (48%), Gaps = 20/383 (5%)

Query: 61  LLSDIPSFNFN-DPLFFREFLK---QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL 116
           LL ++PS+    D + +   L    +      ++R ++ L    G SP+L + NV+ D L
Sbjct: 216 LLDEMPSYEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGL 275

Query: 117 VEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
            +   FK A D  +   +    P+  +    I  LC S  ++ A   +S++ + G+   +
Sbjct: 276 CKLGMFKEAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDV 335

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDG---KVSEGYELL 222
             +NS L G     R    WK +  +  SG         +++   + G   K ++ +ELL
Sbjct: 336 VIYNSLLKGFCHAGRVGEAWKFWDSMSVSGIRNVTSYNIMLKGLFDGGMVDKATDLWELL 395

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            +  +D L P+   F+ +I   CEK    +  ++L       +  D F+Y  +I+GLCK 
Sbjct: 396 EK--DDSLSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKD 453

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            +  +A +++  +    + P++ +Y  +I+G C+     DA +++ +M      P   TY
Sbjct: 454 GRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQASKFSDAIRVYSQMAENDCSPTTITY 513

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N++IHG C+ +   EA R  +EML+KG      TY +LI GLC   + D A  L+ ++  
Sbjct: 514 NTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNTYGSLIRGLCRDKKIDGALALWNQILD 573

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KG+  DV+ +N LI G C  GK+
Sbjct: 574 KGLQTDVVMHNILIHGLCSAGKV 596



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 171/356 (48%), Gaps = 21/356 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-------FSPNPNSL 141
           ++  F+ L S  G +P + S N L D+ V AR F  A  F  S          +PN  + 
Sbjct: 103 ALAAFRRLPSFLGCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTY 162

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + ++ LC  G ++ A   F  L+  G+     T+++ + G +K +R D    L  ++  
Sbjct: 163 NIMLRSLCVRGDLDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDNALYLLDEMPS 222

Query: 202 SGYLIQAFC---------NDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFG 251
                 A C          +G+  +   +  Q++ D G  P    +N ++   C+   F 
Sbjct: 223 YEVQPDAVCYNALLGGCFRNGEFEKAMRVWEQLVRDPGASPNLATYNVMLDGLCKLGMFK 282

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              ++   MVA N  PD  TY  +I+GLC+S     A RV++++ + G VPD V+Y +++
Sbjct: 283 EAGDVWERMVANNHQPDMITYGTMIHGLCRSTDVDSAARVYSEMIKTGLVPDVVIYNSLL 342

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--G 369
            G C  G +G+A K W  M   G+  N  +YN M+ G      +++A  L  E+L+K   
Sbjct: 343 KGFCHAGRVGEAWKFWDSMSVSGIR-NVTSYNIMLKGLFDGGMVDKATDLW-ELLEKDDS 400

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                VT++T+I GLC  G  +++  + EE    G   D  +Y+++I G CK+G++
Sbjct: 401 LSPDMVTFSTMIHGLCEKGFANKSLQILEEARTSGKELDEFSYSSMISGLCKDGRL 456



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 147/335 (43%), Gaps = 14/335 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLD----STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           ++ S N++   L +      A D  +        SP+  +    I  LCE G   ++   
Sbjct: 368 NVTSYNIMLKGLFDGGMVDKATDLWELLEKDDSLSPDMVTFSTMIHGLCEKGFANKSLQI 427

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             + +  G      +++S + G  K  R D   KLY  +    +         LI  FC 
Sbjct: 428 LEEARTSGKELDEFSYSSMISGLCKDGRLDDAVKLYEKISMDSFKPNSHIYNALINGFCQ 487

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K S+   +  Q+ E+   P    +N LI   C+ + +   S     M+ +    D  T
Sbjct: 488 ASKFSDAIRVYSQMAENDCSPTTITYNTLIHGLCKAEKYLEASRFTREMLEKGCMLDVNT 547

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I GLC+ +K   A  ++N + ++G   D VM+  +IHGLC  G + +A ++  EM 
Sbjct: 548 YGSLIRGLCRDKKIDGALALWNQILDKGLQTDVVMHNILIHGLCSAGKVDEASQLLSEMK 607

Query: 332 HKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
            K    PN  TYN+++ G+      ++A  L   +L+ G     ++YNT I GLC   RT
Sbjct: 608 EKNNCCPNVVTYNTLMDGFYETGCFDKAASLWMAILENGLVPDIISYNTRIKGLCSCNRT 667

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            E   L  EM   GI    IT+N L++   K G I
Sbjct: 668 PEGVQLLNEMLASGIIPTAITWNILVRAVIKYGPI 702



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 47/98 (47%), Gaps = 4/98 (4%)

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV----TYNTLIAGLCLHGR 389
           G  P   ++N+++  + R     +A      +    +G        TYN ++  LC+ G 
Sbjct: 115 GCNPGVRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIMLRSLCVRGD 174

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            D A  LF+ +  +G+  D ITY+TL+ G+ K  ++ N
Sbjct: 175 LDRAVTLFDSLRCRGLAPDRITYSTLMSGFVKNNRLDN 212


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/295 (33%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P     +     L + G++EEA   FSK+K   VF   ++ N  L    K+ +TD V + 
Sbjct: 23  PGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 82

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           + D+I +G          +I   C +G V     L  ++   GL+P+   +N +I  F +
Sbjct: 83  FKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGK 142

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                        M      PD  TY  +IN  CK  K  +    F ++K  G  P+ V 
Sbjct: 143 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVS 202

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T++   CK G +  A K + +M   GL+PNEYTY S+I  YC+I NL +A RL  EML
Sbjct: 203 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEML 262

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             G     VTY  LI GLC      E  HL +EM +  I   V+T+  LI G CK
Sbjct: 263 QVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCK 317



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 102/377 (27%), Positives = 165/377 (43%), Gaps = 20/377 (5%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL---FDSLVEARA 121
           +P F   D LF    L     V  +I+ F  +     F P   SCN L   F  L +   
Sbjct: 22  VPGFGVFDALF--SVLIDLGMVEEAIQCFSKMKRFRVF-PKTRSCNGLLHKFAKLGKTDG 78

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
            K     +   G  P   +  + I C+C+ G +E A   F ++K  G+     T+NS + 
Sbjct: 79  VKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMID 138

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K+ R D     +          D+I    LI  FC  GK+ +G E  R++  +GL P
Sbjct: 139 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKP 198

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
              +++ L+  FC++    +  +    M      P+ +TY  +I+  CK     +A+R+ 
Sbjct: 199 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLA 258

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF--EMIHKGLLPNEYTYNSMIHGYC 350
           N++ + G   + V YT +I GLC  GW      +    EM+   +     T+  +I G C
Sbjct: 259 NEMLQVGVEWNVVTYTALIDGLC--GWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLC 316

Query: 351 RIDNLEEAKRLHKEML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           +   + +A      +  D G       Y  +I GLC   + + A  LFE+MAQKG+  D 
Sbjct: 317 KNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDR 376

Query: 410 ITYNTLIQGYCKEGKIV 426
             Y +L+ G  K+G ++
Sbjct: 377 TAYTSLMDGNFKQGNVL 393



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 148/329 (44%), Gaps = 36/329 (10%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++ N L +   +       ++F   +   G  PN  S    +   C+ G++++A   
Sbjct: 163 PDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 222

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           +  ++ +G+  +  T+ S                          LI A+C  G +S+ + 
Sbjct: 223 YVDMRRVGLVPNEYTYTS--------------------------LIDAYCKIGNLSDAFR 256

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L  ++L+ G+      +  LI   C  +N      LL  MV  +      T+  +I+GLC
Sbjct: 257 LANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLC 316

Query: 281 KSR---KRLEAY-RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           K++   K ++ + R+ ND    G   +  +YT +I GLCK   +  A  ++ +M  KGL+
Sbjct: 317 KNKLVSKAIDYFGRISNDF---GLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLV 373

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   Y S++ G  +  N+ EA  L  +M++ G     + Y +L+ GL    +  +A   
Sbjct: 374 PDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARSF 433

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EEM  +GI  D +   ++++ + + G I
Sbjct: 434 LEEMIGEGIHPDEVLCISVLKKHYELGCI 462



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 64/290 (22%), Positives = 124/290 (42%), Gaps = 14/290 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQ 146
           + FF+ +  + G  P++VS + L D+  +    + A+ F   +   G  PN  +    I 
Sbjct: 185 LEFFREMKRN-GLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 243

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--- 203
             C+ G + +AF   +++ ++GV  ++ T+ + + G    +       L  +++E     
Sbjct: 244 AYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKV 303

Query: 204 ------YLIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSEL 256
                  LI   C +  VS+  +   ++  D GL      +  +I   C+       + L
Sbjct: 304 TVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTL 363

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M  +   PD   Y  +++G  K    LEA  + + + E G   D + YT+++ GL  
Sbjct: 364 FEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSH 423

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
              L  AR    EMI +G+ P+E    S++  +  +  + EA  L   ++
Sbjct: 424 CNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHYELGCINEAVELQSYLM 473


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 168/340 (49%), Gaps = 14/340 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLC- 149
           R  Q + S     PD+V+ N L + L +      A   +   GFSPN  +    I  LC 
Sbjct: 101 RILQRMVSE-NLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCR 159

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           E   + EA   F  + + G    + T+N  + G +K DR +  ++L+  L++ G      
Sbjct: 160 ELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAI 219

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
                I   C  G+V +   +L+ + E G VP+  + N +I+  C++K       LL  M
Sbjct: 220 TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM 279

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM--- 317
            A+  +P+  ++  +I G C++ K  +A   F ++ +RG  P  V Y  ++ GLCK    
Sbjct: 280 EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 339

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + +A  ++  MI KG +P+  TY+++I G  +   L++A+RL   M  KG      TY
Sbjct: 340 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTY 399

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           N+LI+GLC   + DEA  LF  M +KG   D ITY T+I 
Sbjct: 400 NSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIIS 439



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 169/342 (49%), Gaps = 19/342 (5%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEE 156
           +GF P+ ++ N L   L        A    +     G+SP+  +    +   C+ G ++E
Sbjct: 4   HGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDE 63

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK---------LYHDLIESGYLIQ 207
           A   F    + G    + T+N+ + G  K D+ D   +         L  D++    L+ 
Sbjct: 64  ALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVN 123

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-EKKNFGRVSELLHTMVARNRA 266
             C +G+V E   L   +++ G  P    ++ LIS  C E +      +L  +++ +   
Sbjct: 124 GLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I+GL K  +  EA+ +F+ L + G  PD + YT  I GLCK G + DA  M
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M  KG +P+  ++N++I+G C+   ++EA+ L   M  KG     +++NTLI G C 
Sbjct: 241 LKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCR 300

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK---EGKI 425
            G+  +A   F+EM ++G+   V+TYN L+ G CK   EG+I
Sbjct: 301 AGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRI 342



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 163/373 (43%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+SPD+V+ N L     +      A+   D     GF P+  +    I   C++  ++EA
Sbjct: 40  GYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEA 99

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------LIESGYLIQAFCN 211
                ++    +   + T+NS + G  K  R D    L  D      +I    LI   C 
Sbjct: 100 QRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCR 159

Query: 212 DGK-VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           + + VSE  +L   VL+ G  PE   +N LI    ++       EL   +V     PD  
Sbjct: 160 ELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAI 219

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY   I+GLCK+ +  +A  +  D+ E+G VPD V +  VI+GLCK   + +A  +   M
Sbjct: 220 TYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGM 279

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC---LH 387
             KG  PN  ++N++I G CR    ++A    KEML +G   T VTYN L+ GLC     
Sbjct: 280 EAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQE 339

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITY----------------------------------- 412
           GR  EA  LF+ M +KG   DV+TY                                   
Sbjct: 340 GRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTY 399

Query: 413 NTLIQGYCKEGKI 425
           N+LI G C   K+
Sbjct: 400 NSLISGLCGLEKV 412



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 80/131 (61%)

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +++ G+ P+ + Y  ++ GLC  G + DA+ ++  MI  G  P+  TYN+++HG+C++  
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L+EA ++    + +G+    VTYN LI G C   + DEA  + + M  + +  DV+TYN+
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 415 LIQGYCKEGKI 425
           L+ G CK G++
Sbjct: 121 LVNGLCKNGRV 131


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 197/421 (46%), Gaps = 18/421 (4%)

Query: 23  NTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK- 81
           N  +R  SI+   S   YT +    C++ R K  +    L     +  ND + F + LK 
Sbjct: 78  NRMIRECSIKVAPSSFTYTILIGCFCRMGRLKHGFAAFGLILKTGWRVNDTVIFSQLLKG 137

Query: 82  --QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTG- 133
                 V  +          +G +PD+ S ++L       +  + A++ L     D  G 
Sbjct: 138 LCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKGFCNEKRAEEALELLSMMADDGDGS 197

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            +PN  +    I  LC++ +++ A   F  + + GV  +  T+   + G + I +   V 
Sbjct: 198 HTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGKWKEVV 257

Query: 194 KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++  ++   G          L+   C +G+ +E   +   V+  G+ P  T +  L+  +
Sbjct: 258 QMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGY 317

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
             + +   +   L  MV    +PD+  +  +     K     EA  +F+ ++++   P+ 
Sbjct: 318 ATEGSLSEMHSFLDLMVGNGVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNI 377

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V Y  +I  LCK+G + DA   + +MI +G+ P+ + ++S+++G C +D  E+A+ L  E
Sbjct: 378 VTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFE 437

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +LD+G    TV +NTL+  LC  GR  EA  L + M + G+  DVI+YNTL+ G+C  G+
Sbjct: 438 VLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGR 497

Query: 425 I 425
           I
Sbjct: 498 I 498



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 169/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G SPD    N++F +  +      AM   D       SPN  +    I  LC+ G +++A
Sbjct: 337 GVSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDA 396

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++ + G+   I  ++S + G   +D+ +   +L+ ++++ G          L+  
Sbjct: 397 VLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNTLMCN 456

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V E   L+  +L  G+ P+  ++N L+   C        ++LL  +V+    PD
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPD 516

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G CK+R+  +AY +F ++  +G  PD V Y T++HGL + G   +A++++ 
Sbjct: 517 KVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYL 576

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI+     N YTYN +I+G C+ + ++EA ++   +  K       T N +I  L   G
Sbjct: 577 SMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGG 636

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  LF  ++  G+  DV TY  + +   KEG +
Sbjct: 637 RKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSL 673



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 152/327 (46%), Gaps = 35/327 (10%)

Query: 101 GFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P++    +L        SL E  +F   +D +   G SP+ +   +      +  +I
Sbjct: 302 GIKPNVTIYGILLHGYATEGSLSEMHSF---LDLMVGNGVSPDHHIFNIMFCAYAKKAMI 358

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           +EA   F K+++                           +L  +++  G LI A C  G+
Sbjct: 359 DEAMHIFDKMRQ--------------------------QRLSPNIVTYGALIDALCKLGR 392

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V +      Q++++G+ P+   F+ L+   C    + +  EL   ++ +    D   +  
Sbjct: 393 VDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFNT 452

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           ++  LC+  + +EA R+ + +   G  PD + Y T++ G C  G + +A K+   ++  G
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIG 512

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P++ TYN+++HGYC+   +++A  L +EML KG     VTYNT++ GL   GR  EA 
Sbjct: 513 LKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAK 572

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+  M       ++ TYN +I G CK
Sbjct: 573 ELYLSMINSRTQMNIYTYNIIINGLCK 599



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 9/283 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC  G + EA      +  +GV   + ++N+ + G     R D   KL   ++  G    
Sbjct: 457 LCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPD 516

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+  +C   ++ + Y L R++L  GL P+   +N ++    +   F    EL  
Sbjct: 517 KVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYL 576

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           +M+      + +TY  +INGLCK+    EA+++F+ L  +    D      +I  L K G
Sbjct: 577 SMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANIMIGALLKGG 636

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              DA  ++  +   GL+P+  TY  +     +  +LEE   L   M + G    +   N
Sbjct: 637 RKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLN 696

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+  L   G  + A     ++ +K    +  T + LI  Y +
Sbjct: 697 ALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSR 739



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 122/305 (40%), Gaps = 16/305 (5%)

Query: 72  DPLFFREF---LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDS-LVEARAFKVA-- 125
           D +FF      L ++  V+ + R    L    G  PD++S N L D   +  R  + A  
Sbjct: 446 DTVFFNTLMCNLCREGRVMEAQRLID-LMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKL 504

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D + S G  P+  +    +   C++  I++A+  F ++   G+   + T+N+ L G  +
Sbjct: 505 LDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQ 564

Query: 186 IDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R     +LY  +I S           +I   C +  V E +++   +    L  +   
Sbjct: 565 TGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFT 624

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            N +I    +        +L  T+ A    PD  TY  +   L K     E   +F+ ++
Sbjct: 625 ANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAME 684

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           E G  P++ M   ++  L   G +  A     ++  K       T + +I  Y R +  +
Sbjct: 685 ENGTAPNSRMLNALVRWLLHRGDINRAGAYLSKLDEKNFSLEASTTSMLISIYSRGEYQQ 744

Query: 357 EAKRL 361
            AK L
Sbjct: 745 LAKSL 749


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 161/335 (48%), Gaps = 18/335 (5%)

Query: 106 LVSCNVLFDSLVEARAFKVAMDFL------DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +VS N L   L + R  + A + L        +  SP+  S  + I      G +++A+ 
Sbjct: 155 VVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYS 214

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F    EMGV   + T+N+ + G  K    D    ++  ++E G          +I   C
Sbjct: 215 LF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLC 271

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              +V     + +++++ G+ P N  +N +I   C+ +   R   +   M+ R   PD+ 
Sbjct: 272 KAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHV 331

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GLCK++   +A  VF  + ++G  PD + YT +I GLCK   +  A  ++ +M
Sbjct: 332 TYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQM 391

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I KG+ PN  TYN +IHGY      EE  +  KEM          TY  L+  LC +G+ 
Sbjct: 392 IDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKC 451

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EA  LF+ M +KGI   V  Y  ++ GY K+G +
Sbjct: 452 NEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGAL 486



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 12/332 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N + D L +A+A   A          G  P+  +  + I  LC++  ++ A
Sbjct: 325 GVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRA 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK---------LYHDLIESGYLIQA 208
              F ++ + GV  +  T+N  + G +   + + V +         L  D+   G L+  
Sbjct: 385 EGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDY 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK +E   L   ++  G+ P  T +  ++  + +K     + +LL+ MVA   +P+
Sbjct: 445 LCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPN 504

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  +  VI    K     E   +F  +K++G  P+ V Y T+I  LCK+G + DA   + 
Sbjct: 505 HRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFN 564

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +MI++G+ PN   +NS+++G C +D  E+ + L  EML++G     V +NT++  LC  G
Sbjct: 565 QMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCKEG 624

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           R  EA  L + M   G+  DVI+YNTLI G+C
Sbjct: 625 RVMEARRLIDSMVCMGLKPDVISYNTLIDGHC 656



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 159/367 (43%), Gaps = 44/367 (11%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
           SPD+VS N++ +          A       G SP+  +    I  LC++  ++ A   F 
Sbjct: 190 SPDVVSYNIVINGFFNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQ 249

Query: 163 KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDG 213
           ++ E GV  +  T+N+ + G  K    D+   ++  +++ G          +I   C   
Sbjct: 250 QMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQ 309

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
            V     + +Q+++ G+ P++  +N +I   C+ +   +   +   M+ +   PDN TY 
Sbjct: 310 AVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYT 369

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-------------------- 313
            +I+GLCK++    A  VF  + ++G  P+   Y  +IHG                    
Sbjct: 370 IIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAH 429

Query: 314 ---------------LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
                          LCK G   +AR ++  MI KG+ P+   Y  M+HGY +   L E 
Sbjct: 430 DLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEM 489

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L   M+  G       +NT+I         DE  H+F +M Q+G+  +V+TY TLI  
Sbjct: 490 HDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDA 549

Query: 419 YCKEGKI 425
            CK G++
Sbjct: 550 LCKLGRV 556



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/324 (27%), Positives = 146/324 (45%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +    ++     +  A     D L+   + G SPN       I    +  +I+E 
Sbjct: 465 GIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNTVICAYAKRAMIDEV 524

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F K+K+ G+  ++ T+                          G LI A C  G+V +
Sbjct: 525 MHIFIKMKQQGLSPNVVTY--------------------------GTLIDALCKLGRVDD 558

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                 Q++ +G+ P N  FN L+   C    + +V EL   M+ +   PD   +  V+ 
Sbjct: 559 AVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLC 618

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK  + +EA R+ + +   G  PD + Y T+I G C    + +A K+   M+  GL P
Sbjct: 619 NLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKP 678

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  +YN+++HGYC+   ++ A  L +EML KG      TYNT++ GL   GR  EA  L+
Sbjct: 679 NIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELY 738

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
             M +      + TY+ ++ G+CK
Sbjct: 739 VNMIKSRKLWSICTYSIILDGFCK 762



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 140/300 (46%), Gaps = 44/300 (14%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRT--DLVWKLYHDLIESGYLIQAFCNDGKVSEGYE---- 220
           + V    K  +S+ L   + +R   D   K+  D      +I  FC  G++  G+     
Sbjct: 50  LSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPDCCTYSIVIGCFCRIGRLELGFAAFGL 109

Query: 221 --------------------------------LLRQVLEDGLVPENTAFNKLISRFCEKK 248
                                           LLRQ+ E G      ++N L+   C+++
Sbjct: 110 ILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRR 169

Query: 249 NFGRVSELLHTMV---ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
                 ELLH MV     + +PD  +Y  VING     +  +AY +F    E G  PD V
Sbjct: 170 RAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLF---LEMGVSPDVV 226

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T+I GLCK   +  A  ++ +M+ KG+ PN  TYN++I G C+   ++ A+ + ++M
Sbjct: 227 TYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKM 286

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +DKG   + VTYNT+I GLC     D A  +F++M  +G+  D +TYNT+I G CK   I
Sbjct: 287 VDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAI 346



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 146/303 (48%), Gaps = 15/303 (4%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             P+  +  L +  LC++G   EA   F  +   G+  S+  +   L G  K      + 
Sbjct: 431 LEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMH 490

Query: 194 KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            L + ++ +G          +I A+     + E   +  ++ + GL P    +  LI   
Sbjct: 491 DLLNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDAL 550

Query: 245 CEKKNFGRVSELL---HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           C+    GRV + +   + M+     P+N  +  ++ GLC   K  +   +F ++  +G  
Sbjct: 551 CK---LGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIR 607

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD V + TV+  LCK G + +AR++   M+  GL P+  +YN++I G+C    ++EA +L
Sbjct: 608 PDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKL 667

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              M+  G     V+YNTL+ G C  GR D AY LF EM +KG+   V TYNT++ G  +
Sbjct: 668 LDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFR 727

Query: 422 EGK 424
            G+
Sbjct: 728 SGR 730



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 168/341 (49%), Gaps = 20/341 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD-------FLDSTGFSPNPNSLELYIQCLCESGL 153
           G SP+    + +F++++ A A +  +D        +   G SPN  +    I  LC+ G 
Sbjct: 500 GISPN----HRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGR 555

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           +++A   F+++   GV  +   +NS + G   +D+ + V +L+ +++  G          
Sbjct: 556 VDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNT 615

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++   C +G+V E   L+  ++  GL P+  ++N LI   C         +LL  MV+  
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  +Y  +++G CK+ +   AY +F ++  +G  P    Y T+++GL + G   +AR
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEAR 735

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++  MI    L +  TY+ ++ G+C+ +  +EA ++ + +         +T+N +I GL
Sbjct: 736 ELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDGL 795

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              GR ++A  LF  +   G+   V+TY  + +   +EG +
Sbjct: 796 FKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSL 836



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 145/349 (41%), Gaps = 22/349 (6%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF-----KVAMDFLD--STGFSPNPNSLE 142
           ++F Q ++   G +P+    NV+F+SLV          KV   FL+  + G  P+     
Sbjct: 561 LQFNQMINE--GVTPN----NVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFN 614

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             +  LC+ G + EA      +  MG+   + ++N+ + G     R D   KL   ++ +
Sbjct: 615 TVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSA 674

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          L+  +C  G++   Y L R++L  G+ P    +N +++       F   
Sbjct: 675 GLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEA 734

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            EL   M+   +     TY  +++G CK+    EA+++F  L       D + +  +I G
Sbjct: 735 RELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFNIMIDG 794

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L K G   DA  ++  +   GL+P+  TY  +        +LEE   L   M   G    
Sbjct: 795 LFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPN 854

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +   N LI  L   G    A     ++ +K    +  T + LI  + +E
Sbjct: 855 SHMLNALIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSRE 903



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 139/337 (41%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   L D+L +  R     + F  + + G +PN       +  LC     E+ 
Sbjct: 535 GLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKV 594

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---------TDLVWKLYHDLIESGYLIQA 208
              F ++   G+   I  +N+ L    K  R         + +   L  D+I    LI  
Sbjct: 595 EELFLEMLNQGIRPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDG 654

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  +LL  ++  GL P   ++N L+  +C+         L   M+ +   P 
Sbjct: 655 HCFASRMDEAVKLLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPG 714

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGL +S +  EA  ++ ++ +   +     Y+ ++ G CK     +A K++ 
Sbjct: 715 VETYNTILNGLFRSGRFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQ 774

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +    L  +  T+N MI G  +    E+A  L   +   G   + VTY  +   L   G
Sbjct: 775 SLCSMDLQLDIITFNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEG 834

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +E   LF  M + G   +    N LI+     G+I
Sbjct: 835 SLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEI 871


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 160/340 (47%), Gaps = 31/340 (9%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYI 145
           + FFQW  S   ++   +S N L + L ++      +    D L   G  PN  +    +
Sbjct: 1   MAFFQWAGSQVHYNHGTLSYNYLLEVLAKSGRCDHVYGTYNDML-GAGCVPNTYTYGYLL 59

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           + LC++   EEA   F  +   G   ++ +++                           L
Sbjct: 60  RSLCQAQRFEEARSVFRGMAAQGCSPNVFSYS--------------------------IL 93

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   KV E  ELL ++++ G  P    +  L+S  C+        +L   MV R  
Sbjct: 94  IAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGC 153

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD   Y  +I+G  K     EAYR+F ++ E+G +P    Y +++ G  + G  G  + 
Sbjct: 154 PPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQS 213

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M+ +G +PN +T+N+++ G+C++ ++ EA RL  EM   G     V+YNTL+ G+C
Sbjct: 214 LFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMC 273

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+  EA  L  EM + G+  D+++YN LI GY K G +
Sbjct: 274 SKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGAL 313



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 163/333 (48%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +   L  SL +A+ F+ A      + + G SPN  S  + I  LC    ++EA
Sbjct: 47  GCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEA 106

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++ + G   ++ T+ S L G  K+ +      L+  ++  G          LI  
Sbjct: 107 AELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDG 166

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + E Y L  ++LE G +P    +N L+S F  K  FGRV  L   M+ +   P+
Sbjct: 167 FSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPN 226

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +++G CK    +EA+R+F +++  G  PD V Y T++ G+C  G   +A+++  
Sbjct: 227 IFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLR 286

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G+ P+  +YN +I GY +   L+ A +L  E+   G      +Y+T+I  LC  G
Sbjct: 287 EMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAG 346

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +   A+ +F++M   G   D      L+ G C+
Sbjct: 347 KVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCR 379



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 125/230 (54%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H  +   YL++     G+    Y     +L  G VP    +  L+   C+ + F     +
Sbjct: 15  HGTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSV 74

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M A+  +P+ F+Y  +I GLC+ +K  EA  + N++ + G+ P+ V Y +++ GLCK
Sbjct: 75  FRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCK 134

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           MG L +A  ++  M+++G  P+   YN +I G+ +  ++ EA RL +EML+KG   T  T
Sbjct: 135 MGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFT 194

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YN+L++G    G       LF++M ++G   ++ T+N L+ G+CK G +V
Sbjct: 195 YNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMV 244



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 145/333 (43%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ S ++L   L   +    A + L+     G  PN  +    +  LC+ G ++EA
Sbjct: 82  GCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEA 141

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              FS++   G       +N  + G  K       ++L+ +++E G          L+  
Sbjct: 142 VDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSG 201

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G+      L + +L  G VP    FN L+  FC+  +      L   M +    PD
Sbjct: 202 FSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPD 261

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  ++ G+C   K  EA R+  ++   G  PD V Y  +I G  K G L  A K+++
Sbjct: 262 VVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFY 321

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+   GL P+ ++Y+++I   CR   +  A  + K+M+  G          L+ GLC   
Sbjct: 322 EIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGE 381

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           R  E+  LF+ M +      +  YN L+   CK
Sbjct: 382 RLTESCELFQAMVKFECVPLIPEYNLLMYKLCK 414



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/317 (20%), Positives = 129/317 (40%), Gaps = 47/317 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+   L   L +    K A+D        G  P+     + I    + G + EA
Sbjct: 117 GHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEA 176

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
           +  F ++ E G   ++ T+NS L G  +      V  L+ D++  G              
Sbjct: 177 YRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDG 236

Query: 204 ------------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          L++  C+ GK  E   LLR+++  G+ P+
Sbjct: 237 FCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQRLLREMIRSGVGPD 296

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             ++N LI  + +        +L + +      PD F+Y  +I+ LC++ K   A+ VF 
Sbjct: 297 IVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFK 356

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+   G  PD  +   ++ GLC+   L ++ +++  M+    +P    YN +++  C+  
Sbjct: 357 DMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAK 416

Query: 354 NLEEAKRLHKEMLDKGY 370
             ++   +  E+ ++G+
Sbjct: 417 RSDDVCEIFHELTERGF 433



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/236 (20%), Positives = 100/236 (42%), Gaps = 9/236 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    +   C+ G + EA   F +++ +G    + ++N+ + G     +    
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEA 281

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++I SG          LI  +   G +    +L  ++ + GL P+  +++ +I  
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYSTIIDC 341

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C     G    +   M+A   APD      ++ GLC+  +  E+  +F  + +   VP 
Sbjct: 342 LCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKFECVPL 401

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
              Y  +++ LCK     D  +++ E+  +G  P+      ++    R D+ E A+
Sbjct: 402 IPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETLRRSDDKEAAE 457


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/341 (30%), Positives = 156/341 (45%), Gaps = 15/341 (4%)

Query: 100 YGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF   L SCN L  +LV   E    +     +      PN  +  ++I  LC++G + +
Sbjct: 159 YGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNK 218

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG------CIKIDRTD------LVWKLYHDLIESGY 204
           A      +K  G   +I T+N+ + G        K+ R D      L  K+  + I    
Sbjct: 219 AEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNT 278

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC D  V        ++   GL P    +N LI+             L   MV   
Sbjct: 279 LIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLG 338

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  T+  +ING CK +   EA ++F+D+ E+  VP+ + + T+I   CK G + +  
Sbjct: 339 LKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGF 398

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M+ +G+ PN  TYN +I G CR  N+  AK+L  EM +       VTYN LI G 
Sbjct: 399 ALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGW 458

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G   +A  L  EM   G+  + +TYNTL+ GYC EG +
Sbjct: 459 CKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNL 499



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 178/389 (45%), Gaps = 33/389 (8%)

Query: 66  PSFNFNDP-LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           P F    P +F  +      +  L +RFFQW    +  S  L +   +   L  ++ +  
Sbjct: 37  PHFRTTKPAIFLDQLFNAGVDSELVLRFFQWSQKEFRISYGLETTGKVLHLLANSKKYSK 96

Query: 125 AMDFLDS------------------TGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKL 164
              FLD                    G  P  N+L  ++ +     +  I  A   F ++
Sbjct: 97  VRSFLDKLVKNEKHTVSSVFHSLLLGGDRPCANALITDMLVLAYVTNLEIHSACEVFRRV 156

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKV 215
           ++ G   S+ + N  L   +K + T  +  +Y ++I+             I   C  GK+
Sbjct: 157 QDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKL 216

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG---RVSELLHTMVARNRAPDNFTY 272
           ++  +++  +   G  P    +N LI   C+K + G   R   +L  M+A    P+  T+
Sbjct: 217 NKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITF 276

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G CK    L A   F +++ +G  P+ V Y ++I+GL   G L +A  +W +M+ 
Sbjct: 277 NTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVG 336

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            GL PN  T+N++I+G+C+   ++EA++L  ++ ++      +T+NT+I   C  G  +E
Sbjct: 337 LGLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEE 396

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            + L   M  +GIF +V TYN LI G C+
Sbjct: 397 GFALHNSMLDEGIFPNVSTYNCLIAGLCR 425



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 187/401 (46%), Gaps = 38/401 (9%)

Query: 32  ETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFN-FNDPLFFREFLKQQNNVLLSI 90
           ET E Q +Y E+ K+     R +P        ++ +FN F + L     L +  +V+  I
Sbjct: 180 ETGEMQYVYKEMIKR-----RIQP--------NLTTFNIFINGLCKAGKLNKAEDVIEDI 226

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEA-------RAFKVAMDFLDSTGFSPNPNSLEL 143
           +        +GFSP++V+ N L D   +        RA  +  + L +    PN  +   
Sbjct: 227 K-------AWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEML-ANKICPNEITFNT 278

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVWK------ 194
            I   C+   +  A  AF +++  G+  +I T+NS + G     K+D    +W       
Sbjct: 279 LIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLG 338

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  +++    LI  FC    + E  +L   + E  LVP    FN +I  FC+        
Sbjct: 339 LKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGF 398

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            L ++M+     P+  TY  +I GLC+++    A ++ N+++      D V Y  +I G 
Sbjct: 399 ALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGW 458

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G    A K+  EM++ G+ PN  TYN+++ GYC   NL+ A ++  +M  +G     
Sbjct: 459 CKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANV 518

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           VTYN LI G C  G+ ++A  L  EM +KG+  +  TY+ +
Sbjct: 519 VTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV 559



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 60/250 (24%), Positives = 110/250 (44%), Gaps = 28/250 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L +   + +  K A    D        PN  +    I   C++G++EE 
Sbjct: 338 GLKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEG 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
           F   + + + G+F ++ T+N  + G  +        KL +         D++    LI  
Sbjct: 398 FALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGG 457

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C DG+ S+  +LL ++L  G+ P +  +N L+  +C + N     ++   M    +  +
Sbjct: 458 WCKDGEPSKAEKLLGEMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRAN 517

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G CK+ K  +A R+ N++ E+G  P+   Y  V                  
Sbjct: 518 VVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYDVV----------------RL 561

Query: 329 EMIHKGLLPN 338
           EM+ KG +P+
Sbjct: 562 EMLEKGFIPD 571



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 74/142 (52%), Gaps = 3/142 (2%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  VF  +++ G+         ++  L K    G+ + ++ EMI + + PN  T+N  I+
Sbjct: 149 ACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFIN 208

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH---LFEEMAQKG 404
           G C+   L +A+ + +++   G+    VTYNTLI G C  G   + Y    + +EM    
Sbjct: 209 GLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANK 268

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           I  + IT+NTLI G+CK+  ++
Sbjct: 269 ICPNEITFNTLIDGFCKDENVL 290



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 9/86 (10%)

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           Y  N  IH  C +          + + D G+  +  + N L++ L     T E  ++++E
Sbjct: 140 YVTNLEIHSACEV---------FRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKE 190

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M ++ I  ++ T+N  I G CK GK+
Sbjct: 191 MIKRRIQPNLTTFNIFINGLCKAGKL 216


>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Vitis vinifera]
          Length = 798

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 191/430 (44%), Gaps = 51/430 (11%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGF 102
           I+ +V  +  T    E  L    P   F       + +++Q    L  RFF W      F
Sbjct: 37  ISNEVLTVMETVNPMEDALEKLAP---FLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF 93

Query: 103 SPDLVSCNVLFDSLVEARAFKV---AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
               V+ N++ D L +   F      ++ L ++     P +  + I    +SG+ E+A  
Sbjct: 94  R-SWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVE 152

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
           +F K+K+ G    + T+NS L   ++ +   L   +Y+ +++  Y         L+   C
Sbjct: 153 SFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLC 212

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +GK  +  ++  ++ + G+ P    +  ++S  C+ K    V  LL+TM      PD+ 
Sbjct: 213 KNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSI 272

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV----------------------------- 301
           T   +++G CK  +  EA+ +    ++ GYV                             
Sbjct: 273 TCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM 332

Query: 302 ------PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
                 PD V+YT +I G C++G +  A  M  +M  +GL P+ Y YN++I G+C +  L
Sbjct: 333 FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLL 392

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           ++A+ L  E+       T+ TY  LI G+C +G  DEA  +F +M   G    ++T+N L
Sbjct: 393 DKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNAL 452

Query: 416 IQGYCKEGKI 425
           I G CK G++
Sbjct: 453 IDGLCKAGEL 462



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/386 (25%), Positives = 163/386 (42%), Gaps = 60/386 (15%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  PD+ + N +   +V+   F +A+   +      ++PN  +  + +  LC++G  ++
Sbjct: 160 FGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDD 219

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A   F ++ + G+  +   +   L G  +  RTD V +L + +  SG          L+ 
Sbjct: 220 ALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLD 279

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G++ E + LL+   ++G V     ++ LI      K +  V E    M      P
Sbjct: 280 GFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEP 339

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I G C+      A  + ND+ +RG  PDT  Y  +I G C +G L  AR + 
Sbjct: 340 DVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQ 399

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            E+      P   TY  +I G CR   L+EA+++  +M + G   + +T+N LI GLC  
Sbjct: 400 LEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKA 459

Query: 388 GRTDEAYHLFEEM----------------------------------------------- 400
           G  +EA HLF +M                                               
Sbjct: 460 GELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQ 519

Query: 401 -AQKGIFRDVITYNTLIQGYCKEGKI 425
            A  G+  D++TYN LI G+CK   I
Sbjct: 520 LADSGVVPDIMTYNVLINGFCKAKNI 545



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 166/388 (42%), Gaps = 60/388 (15%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           +  G  P+ +   ++   L +A+        L++   +G  P+  +    +   C+ G I
Sbjct: 228 TQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLDGFCKLGQI 287

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           +EAF      ++ G    IK ++S + G  +  R D V +    + ++G          L
Sbjct: 288 DEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTIL 347

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+ FC  G V     +L  + + GL P+   +N LI  FC+     +   L   +   + 
Sbjct: 348 IRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDC 407

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P + TY  +I G+C++    EA ++FN ++  G  P  + +  +I GLCK G L +AR 
Sbjct: 408 FPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARH 467

Query: 326 MWFEM------------------------------------------------IHKGLLP 337
           ++++M                                                   G++P
Sbjct: 468 LFYKMEIGKNPSLFLRLSQGADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVP 527

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN +I+G+C+  N+  A +L +E+  KG+   +VTY TLI G     R ++A+ + 
Sbjct: 528 DIMTYNVLINGFCKAKNINGAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVL 587

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++M + G       Y  L+   C++GK+
Sbjct: 588 DQMVKNGCTPSSAVYKCLMTWSCRKGKL 615



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 156/354 (44%), Gaps = 28/354 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +  G SPD    N L     +     +A  + ++   +  F P   +  + I  +C +GL
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCF-PTSCTYTILICGMCRNGL 426

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------------- 197
           ++EA   F++++ +G   SI T+N+ + G  K    +    L++                
Sbjct: 427 LDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQ 486

Query: 198 ------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                 D      +++  C  G + + Y+LL Q+ + G+VP+   +N LI+ FC+ KN  
Sbjct: 487 GADRVMDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNIN 546

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              +L   +  +  +PD+ TY  +I+G  +  +  +A+RV + + + G  P + +Y  ++
Sbjct: 547 GAFKLFRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLM 606

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
              C+ G L  A  +W + + + L   E     +   +     LE+A R   EM  K   
Sbjct: 607 TWSCRKGKLSVAFSLWLKYL-RSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNN 665

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                Y   + GLC   R++EA  +F  + +  +  +  +   LI G CK+G +
Sbjct: 666 FEIAPYTIWLIGLCQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNL 719



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 73/311 (23%), Positives = 136/311 (43%), Gaps = 25/311 (8%)

Query: 112 LFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           L D L  A+ +    ++   +   G  P+     + I+  CE G+++ A    + + + G
Sbjct: 312 LIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRG 371

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGY 219
           +      +N+ + G   +   D    L  ++ ++           LI   C +G + E  
Sbjct: 372 LSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEAR 431

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM-VARN------------RA 266
           ++  Q+   G  P    FN LI   C+         L + M + +N            R 
Sbjct: 432 QIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRV 491

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            D  + + ++  LC+S   L+AY++   L + G VPD + Y  +I+G CK   +  A K+
Sbjct: 492 MDTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKL 551

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + E+  KG  P+  TY ++I G+ R+D  E+A R+  +M+  G   ++  Y  L+   C 
Sbjct: 552 FRELQLKGHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCR 611

Query: 387 HGRTDEAYHLF 397
            G+   A+ L+
Sbjct: 612 KGKLSVAFSLW 622



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 131/331 (39%), Gaps = 59/331 (17%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN----------------SLE 142
           + G SP +++ N L D L +A   + A           NP+                SL+
Sbjct: 439 NLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQGADRVMDTASLQ 498

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL--- 199
             ++ LCESGLI +A+    +L + GV   I T+N  + G  K    +  +KL+ +L   
Sbjct: 499 TMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLK 558

Query: 200 ------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF--- 250
                 +  G LI  F    +  + + +L Q++++G  P +  +  L++  C K      
Sbjct: 559 GHSPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVA 618

Query: 251 ----------------------------GRVSELLHTMVARNRAPDNF---TYEEVINGL 279
                                       G + + +  ++  N   +NF    Y   + GL
Sbjct: 619 FSLWLKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGL 678

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C++R+  EA ++F  LKE     +      +I+GLCK G L  A  ++   + KG +   
Sbjct: 679 CQARRSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMP 738

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
              N ++      D ++ A  L   M   GY
Sbjct: 739 RICNQLLRSLILQDKMKHALDLLNRMNSAGY 769


>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
 gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
 gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
 gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
 gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 729

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 13/345 (3%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLC 149
           F  L S  GF+  + +CN L  SLV     ++A      +  +G   N  +L + +  LC
Sbjct: 188 FTLLRSK-GFTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALC 246

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           + G +E+     S+++E GV+  I T+N+ +         +  ++L + +   G+     
Sbjct: 247 KDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVY 306

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I   C  GK     E+  ++L  GL P++T +  L+   C+K +     ++   M
Sbjct: 307 TYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDM 366

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            +R+  PD   +  +++   +S    +A   FN +KE G +PD V+YT +I G C+ G +
Sbjct: 367 RSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMI 426

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A  +  EM+ +G   +  TYN+++HG C+   L EA +L  EM ++     + T   L
Sbjct: 427 SVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTIL 486

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C  G    A  LF++M +K I  DV+TYNTL+ G+ K G I
Sbjct: 487 IDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDI 531



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 120/423 (28%), Positives = 185/423 (43%), Gaps = 68/423 (16%)

Query: 72  DPLFFREFL-KQQNNVLLSIRFFQWLHSHY-GFSPDLVSCNVLFDSLVEARAFKVA---- 125
           +PL   E L + +N++ L  RF   L  H+  F    +S + +   LV +     A    
Sbjct: 77  NPLAVVEVLYRCRNDLTLGQRFVDQLGFHFPNFKHTSLSLSAMIHILVRSGRLSDAQSCL 136

Query: 126 --------------MDFLDSTGFS---PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
                         ++ LDST FS    N +  +L I+   ++  + EA  AF+ L+  G
Sbjct: 137 LRMIRRSGVSRLEIVNSLDST-FSNCGSNDSVFDLLIRTYVQARKLREAHEAFTLLRSKG 195

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
              SI   N+ +   ++I   +L W +Y ++  SG          ++ A C DGK+ +  
Sbjct: 196 FTVSIDACNALIGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNALCKDGKMEKVG 255

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
             L QV E G+ P+   +N LIS +  K       EL++ M  +  +P  +TY  VINGL
Sbjct: 256 TFLSQVQEKGVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGL 315

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK------ 333
           CK  K   A  VF ++   G  PD+  Y +++   CK G + +  K++ +M  +      
Sbjct: 316 CKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDL 375

Query: 334 -----------------------------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
                                        GL+P+   Y  +I GYCR   +  A  L  E
Sbjct: 376 VCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNE 435

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           ML +G     VTYNT++ GLC      EA  LF EM ++ +F D  T   LI G+CK G 
Sbjct: 436 MLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGN 495

Query: 425 IVN 427
           + N
Sbjct: 496 LQN 498



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 170/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L  +       + A + +++    GFSP   +    I  LC+ G  E A
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324

Query: 158 FCAFSKLKEMGVFGSIKTWNSALL-GCIKID--RTDLVWK------LYHDLIESGYLIQA 208
              F+++   G+     T+ S L+  C K D   T+ V+       +  DL+    ++  
Sbjct: 325 KEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSL 384

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + +       V E GL+P+N  +  LI  +C K        L + M+ +  A D
Sbjct: 385 FTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMD 444

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLCK +   EA ++FN++ ER   PD+   T +I G CK+G L +A +++ 
Sbjct: 445 VVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQ 504

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  K +  +  TYN+++ G+ ++ +++ AK +  +M+ K    T ++Y+ L+  LC  G
Sbjct: 505 KMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKG 564

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              EA+ +++EM  K I   V+  N++I+GYC+ G
Sbjct: 565 HLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSG 599



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 161/335 (48%), Gaps = 14/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GFSP + + N + + L +     RA +V  + L S G SP+  +    +   C+ G + E
Sbjct: 300 GFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRS-GLSPDSTTYRSLLMEACKKGDVVE 358

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
               FS ++   V   +  ++S +    +    D     ++ + E+G          LIQ
Sbjct: 359 TEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQ 418

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G +S    L  ++L+ G   +   +N ++   C++K  G   +L + M  R   P
Sbjct: 419 GYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFP 478

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D++T   +I+G CK      A  +F  +KE+    D V Y T++ G  K+G +  A+++W
Sbjct: 479 DSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIW 538

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ K +LP   +Y+ +++  C   +L EA R+  EM+ K    T +  N++I G C  
Sbjct: 539 ADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRS 598

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G   +     E+M  +G   D I+YNTLI G+ +E
Sbjct: 599 GNASDGESFLEKMISEGFVPDCISYNTLIYGFVRE 633



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 180/403 (44%), Gaps = 25/403 (6%)

Query: 40  YTEIAKQVCK---ITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQ---QNNVLLSIRFF 93
           Y  +   +CK     R K  + + L S +      D   +R  L +   + +V+ + + F
Sbjct: 308 YNTVINGLCKHGKYERAKEVFAEMLRSGLSP----DSTTYRSLLMEACKKGDVVETEKVF 363

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCE 150
             + S     PDLV  + +      +     A+ + +S    G  P+     + IQ  C 
Sbjct: 364 SDMRSR-DVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCR 422

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
            G+I  A    +++ + G    + T+N+ L G  K        KL++++ E         
Sbjct: 423 KGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYT 482

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI   C  G +    EL +++ E  +  +   +N L+  F +  +     E+   MV
Sbjct: 483 LTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMV 542

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           ++   P   +Y  ++N LC      EA+RV++++  +   P  ++  ++I G C+ G   
Sbjct: 543 SKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNAS 602

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNT 379
           D      +MI +G +P+  +YN++I+G+ R +N+ +A  L K+M ++  G      TYN+
Sbjct: 603 DGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNS 662

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           ++ G C   +  EA  +  +M ++G+  D  TY  +I G+  +
Sbjct: 663 ILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/284 (25%), Positives = 133/284 (46%), Gaps = 14/284 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G + D+V+ N +   L + +    A    +        P+  +L + I   C+ G ++ A
Sbjct: 440 GCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNA 499

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F K+KE  +   + T+N+ L G  K+   D   +++ D++             L+ A
Sbjct: 500 MELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNA 559

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G ++E + +  +++   + P     N +I  +C   N       L  M++    PD
Sbjct: 560 LCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPD 619

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVMYTTVIHGLCKMGWLGDARKM 326
             +Y  +I G  +     +A+ +   ++E   G VPD   Y +++HG C+   + +A  +
Sbjct: 620 CISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVV 679

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
             +MI +G+ P+  TY  MI+G+   DNL EA R+H EML +G+
Sbjct: 680 LRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGF 723



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 59/240 (24%), Positives = 103/240 (42%), Gaps = 31/240 (12%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ N L D   +      A +    + S    P P S  + +  LC  G + EAF  +
Sbjct: 514 DVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVW 573

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
            ++    +  ++   NS                          +I+ +C  G  S+G   
Sbjct: 574 DEMISKNIKPTVMICNS--------------------------MIKGYCRSGNASDGESF 607

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGL 279
           L +++ +G VP+  ++N LI  F  ++N  +   L+  M        PD FTY  +++G 
Sbjct: 608 LEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLVKKMEEEQGGLVPDVFTYNSILHGF 667

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C+  +  EA  V   + ERG  PD   YT +I+G      L +A ++  EM+ +G  P++
Sbjct: 668 CRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQDNLTEAFRIHDEMLQRGFSPDD 727


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+  +L ++  +   +K AM  LD   + G +P+  +  + +  +C+ G +++A
Sbjct: 186 GCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDA 245

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 L   G   +  ++N  L G    +R +   KL  ++ + GY         LI  
Sbjct: 246 IEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISF 305

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G V    E+L Q+ + G  P + ++N ++  FC++K   R    +  MV+R   PD
Sbjct: 306 LCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPD 365

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  ++  LC+  +   A  + + LK++G  P  + Y TVI GL K G   +A ++  
Sbjct: 366 IVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLN 425

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KGL P+  TY+++  G CR D +EEA R   ++ D G    TV YN ++ GLC   
Sbjct: 426 EMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRR 485

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T  A  LF  M   G   +  TY  LI+G   EG +
Sbjct: 486 ETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLV 522



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/377 (25%), Positives = 162/377 (42%), Gaps = 22/377 (5%)

Query: 62  LSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVS----CNVLFDSLV 117
           +S +P+F  + P       K     L       + H+    SP+ V      N     LV
Sbjct: 15  MSALPTFASSHPYPSLPTTKP----LTPNSRLNFAHAGVAASPNAVPHRAVSNDRLRGLV 70

Query: 118 EARAFKVAMDFLDS-TGFSPN--PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
                + A+  ++S +G  P+  P      I+ LC SG   EA    +  +       + 
Sbjct: 71  RRGDLEEALRLVESMSGLEPSAAPGPCAALIKKLCASGRTAEARRVLAACEP-----DVM 125

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIES------GYLIQAFCNDGKVSEGYELLRQVLED 228
            +N+ + G     + D   +L  D+           LI+  C  G+      +L  +L  
Sbjct: 126 AYNAMVAGYCVTGQLDAARRLVADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRR 185

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G VP+   +  L+   C++  + +  +LL  M A+  APD  TY  V+NG+C+  +  +A
Sbjct: 186 GCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEGRVDDA 245

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                 L   G  P+TV Y  V+ GLC      DA K+  EM  KG  PN  T+N +I  
Sbjct: 246 IEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISF 305

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            CR   +E A  +  ++   G    +++YN ++   C   + D A    E M  +G + D
Sbjct: 306 LCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPD 365

Query: 409 VITYNTLIQGYCKEGKI 425
           +++YNTL+   C+ G++
Sbjct: 366 IVSYNTLLTALCRGGEV 382



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 122/302 (40%), Gaps = 48/302 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  +I F + L SH G  P+ VS N++   L  A  ++ A   M  +   G+ PN 
Sbjct: 238 QEGRVDDAIEFLKSLPSH-GCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNV 296

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL--- 195
            +  + I  LC  GL+E A     ++ + G   +  ++N  L    K  + D        
Sbjct: 297 VTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVEL 356

Query: 196 ------YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
                 Y D++    L+ A C  G+V    ELL Q+ + G  P   ++N +I    +   
Sbjct: 357 MVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGK 416

Query: 250 FGRVSELLHTMVARNRAPDNFTYE-----------------------------------E 274
                ELL+ MV +   PD  TY                                     
Sbjct: 417 TKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNA 476

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           ++ GLCK R+   A  +F  +   G +P+   YT +I GL   G + +AR++  E+  +G
Sbjct: 477 ILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRG 536

Query: 335 LL 336
           ++
Sbjct: 537 VV 538



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 57/129 (44%), Gaps = 12/129 (9%)

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT--YNSMIHGYCRIDNLEEA 358
           VP   +    + GL + G L +A ++   M   GL P+       ++I   C      EA
Sbjct: 56  VPHRAVSNDRLRGLVRRGDLEEALRLVESM--SGLEPSAAPGPCAALIKKLCASGRTAEA 113

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +R+             + YN ++AG C+ G+ D A  L  +M  +    D  TYNTLI+G
Sbjct: 114 RRVLA-----ACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPME---PDSYTYNTLIRG 165

Query: 419 YCKEGKIVN 427
            C  G+  N
Sbjct: 166 LCGRGRTGN 174


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 102/352 (28%), Positives = 170/352 (48%), Gaps = 17/352 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
             + +      +PDLV+ + + +   +     RA ++  + +   G +P+  +    +  
Sbjct: 31  VLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYTSVVDG 90

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------D 198
           LC  G ++ A     ++K  GV     T+++ + G     + D   KLY          D
Sbjct: 91  LCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSCRLD 150

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQV--LEDGL-VPENTAFNKLISRFCEKKNFGRVSE 255
            + S  LI   C + ++ E YEL +++   EDG   P+   +  LI  FC+  N  +  +
Sbjct: 151 AVSSSALITGLCRERRIGEAYELFQEMEMREDGAWKPDVVTYTALIDGFCKSGNLEKAMK 210

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M  R   P+  TY  +++GLCK+    +A  +F  +  +G VP+ V YTT+IHGLC
Sbjct: 211 MLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLC 270

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               +  AR +  EM       +  +YN+++ GYCR+  +EEAK+L KEM  K      +
Sbjct: 271 AAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRI 330

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEM-AQKGIFRDVITYNTLIQGYCKEGKIV 426
           TY  L+ G C   R +EA  L E M    GI  DV+TY+ ++ GY +  + V
Sbjct: 331 TYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFV 382



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 169/344 (49%), Gaps = 23/344 (6%)

Query: 102 FSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            +P+  + NV+ + L +AR    A++V  +  D    +P+  +    I   C+ G ++ A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 158 FCAFSKLKEM----GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            C    L+EM    G+   + T+ S + G  +  + D   ++  ++   G          
Sbjct: 65  -CEI--LREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA 121

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +CN  KV E  +L +++L      +  + + LI+  C ++  G   EL   M  R 
Sbjct: 122 LITGWCNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMRE 181

Query: 265 RA---PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                PD  TY  +I+G CKS    +A ++   ++ R  VP+ V Y++++HGLCK G L 
Sbjct: 182 DGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLD 241

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A  ++  M  KG +PN  TY ++IHG C    ++ A+ L  EM        TV+YN L+
Sbjct: 242 QALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALL 301

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G C  GR +EA  LF+EMA K    D ITY  L++G+C   ++
Sbjct: 302 DGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRL 345



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 161/342 (47%), Gaps = 24/342 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+ + L   L +A     A+D    + S G  PN  +    I  LC +  ++ A   
Sbjct: 222 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 281

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
             ++          ++N+ L G  ++ R +   +L+          D I    L++ FCN
Sbjct: 282 MDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCN 341

Query: 212 DGKVSEGYELLRQV-LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             ++ E   LL  +    G+ P+   ++ +++ +   K F   +E +  M+ARN AP+  
Sbjct: 342 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 401

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GLCK+ +   A  V  ++ +    PD V YT VI GLC      +A  +  EM
Sbjct: 402 TYSSLIDGLCKAGRVNHAMEVLKNVDK----PDVVTYTIVIEGLCGTDRTEEALTLLEEM 457

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           ++K + P+  T+NS+I   CR+ +++EA +L   M   G     VTY TL+ G    GR 
Sbjct: 458 VNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRM 517

Query: 391 DEAYHLFEEMAQKGIFRDVI-------TYNTLIQGYCKEGKI 425
           + AY LFE M +K               ++ LI+G CK  +I
Sbjct: 518 EIAYELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREI 559



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 71/323 (21%), Positives = 125/323 (38%), Gaps = 45/323 (13%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFF 93
           +E++QL+ E+A + C             L D  ++        R F       L   RF 
Sbjct: 311 EEAKQLFKEMAAKSC-------------LPDRITYT----CLVRGFCNASR--LEEARFL 351

Query: 94  -QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
            + + +  G  PD+V+ +++      A+ F  A +F+    +   +PN  +    I  LC
Sbjct: 352 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 411

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------- 202
           ++G +  A      + +  V     T+   + G    DRT+    L  +++         
Sbjct: 412 KAGRVNHAMEVLKNVDKPDVV----TYTIVIEGLCGTDRTEEALTLLEEMVNKRVEPSVG 467

Query: 203 --GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I A C  G + E ++LL  +   GL P    +  L+  F          EL   M
Sbjct: 468 TFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 527

Query: 261 --------VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
                    A N  P+   +  +I GLCK+R+  +A  V  +L+ R   P       ++ 
Sbjct: 528 RRKAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVD 586

Query: 313 GLCKMGWLGDARKMWFEMIHKGL 335
           GL + G   +A K+   +   GL
Sbjct: 587 GLLRAGRTEEAGKLINSISKVGL 609


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 30/341 (8%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELY 144
           + +RFF+ +  + G  P++V+ N + D   + +    A  FL S G     PN  +  + 
Sbjct: 1   MGLRFFKEMERN-GCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMI 59

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC  G ++E      ++   G      T+N+                          
Sbjct: 60  INGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNT-------------------------- 93

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  +C +G   +   L  +++ +GL P    +  LI+  C+  N  R  E    M  R 
Sbjct: 94  LVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRG 153

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +ING  +     EAYRV N++   G++P  V Y  +I+G C +G + +A 
Sbjct: 154 LCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAI 213

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M+ KG+LP+  +Y+++I G+ R   L+ A ++  EM+ K      VTY++LI GL
Sbjct: 214 GLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGL 273

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   R  EA  +F+EM    +  D  TY TLI  YCKEG +
Sbjct: 274 CEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDL 314



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 165/358 (46%), Gaps = 49/358 (13%)

Query: 92  FFQWLHSHY-----GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLEL 143
           F Q L  H      G SP++V+   L +S+ +A     AM+F D     G  PN  +   
Sbjct: 104 FHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTT 163

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            I    + GL++EA+   +++   G   SI T+N+                         
Sbjct: 164 IINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNA------------------------- 198

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C  G++ E   LL+ ++  G++P+  +++ +IS F   +   R  ++   M+ +
Sbjct: 199 -LINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGK 257

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  PD  TY  +I GLC+ R+  EA  +F ++      PD   YTT+I+  CK G L  A
Sbjct: 258 SVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKA 317

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI-- 381
             +  EMI KG LP+  TYN +I+G  +    +EA+RL  ++       + VTYNTLI  
Sbjct: 318 LHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIEN 377

Query: 382 -------------AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                         G C+ G  DEA  +FE M  K    +   YN +I G+C+ G ++
Sbjct: 378 CCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIGNVL 435



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 18/335 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L++ N++ + L      K   + L      G+ P+  +    +   C+ G   +A
Sbjct: 48  GLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQA 107

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++   G+  ++ T+ S +    K    +   + +  +   G          +I  
Sbjct: 108 LVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIING 167

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
           F   G + E Y +L ++   G +P    +N LI+  C     GR+ E   LL  MV +  
Sbjct: 168 FAQQGLLDEAYRVLNEMTRSGFIPSIVTYNALINGHCV---LGRMEEAIGLLQDMVGKGV 224

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  +Y  +I+G  ++++   A+++  ++  +  +PD V Y+++I GLC+   L +A  
Sbjct: 225 LPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACD 284

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           M+ EM+   L P+E+TY ++I+ YC+  +L +A  LH EM+ KG+    VTYN LI GL 
Sbjct: 285 MFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLN 344

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
              R+ EA  L  ++         +TYNTLI+  C
Sbjct: 345 KQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCC 379


>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 804

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 188/430 (43%), Gaps = 51/430 (11%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGF 102
           I+ +V  I  +    E  L S +P   F  P      +K   N LL  RFF W  S +  
Sbjct: 32  ISNEVLTIIDSVNPIEPALESKVP---FLSPSIVTYIIKNPPNSLLGFRFFIW-ASKFRR 87

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
               VS N++ D L++   F++    L      GFS + ++  + IQ   +  +IE+A  
Sbjct: 88  LRSWVSHNMIIDMLIKDNGFELYWQVLKEIKRCGFSISADAFTVLIQAYAKMDMIEKAVE 147

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFC 210
           +F  +K+      + T+N+ L   ++ +   L   +Y+ +++            LI   C
Sbjct: 148 SFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRMLKLNCLPNIATFSILIDGMC 207

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK     ++  ++ +  ++P    +  +IS  C+ +       L   M      PD+ 
Sbjct: 208 KSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLFIAMKDHGCIPDSV 267

Query: 271 TYEEVINGLCKSRKRLEAY----------------------------RVFND-------L 295
           TY  +++G CK  +  EA                             R F D       +
Sbjct: 268 TYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRARRFEDAQVWYRKM 327

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            E    PD ++YT ++ GL K G   DA ++  EM  +GL+P+ + YN++I GYC +  L
Sbjct: 328 TEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLL 387

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           +EAK LH E+       +  TY  LI G+C  G   +A  +F EM + G +  V+T+N L
Sbjct: 388 DEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFNEMEKHGCYPSVVTFNAL 447

Query: 416 IQGYCKEGKI 425
           I G+CK G I
Sbjct: 448 IDGFCKAGNI 457



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 167/420 (39%), Gaps = 101/420 (24%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ + ++L D + ++   + A+   D        PN  +  + I  LC++   + A+  
Sbjct: 194 PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRL 253

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTD------------------------------ 190
           F  +K+ G      T+N+ L G  K+ R D                              
Sbjct: 254 FIAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFR 313

Query: 191 -------LVW-------KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                   VW        +  D+I    +++     GK  +   LL ++ E GLVP+   
Sbjct: 314 ARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHC 373

Query: 237 FNKLISRFCEKKNFGRVSEL--LHTMVARNRA-PDNFTYEEVINGLCKSRKRLEAYRVFN 293
           +N LI  +C+    G + E   LH  +++N       TY  +I G+C+S    +A ++FN
Sbjct: 374 YNALIKGYCD---LGLLDEAKSLHLEISKNDCFSSACTYTILICGMCRSGLVGDAQQIFN 430

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM----------------------- 330
           ++++ G  P  V +  +I G CK G +  A+ ++++M                       
Sbjct: 431 EMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANRVLDTA 490

Query: 331 -------------------------IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
                                       G  PN  TYN +IHG+C+  N+  A +L KE+
Sbjct: 491 SLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFKLFKEL 550

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             KG    +VTY TLI GL    R ++A+ + +++ + G       Y + +   C+  KI
Sbjct: 551 QLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSCRRNKI 610



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 133/316 (42%), Gaps = 42/316 (13%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           + +   PD++   ++   L +A  FK A+  L+     G  P+ +     I+  C+ GL+
Sbjct: 328 TEHNIKPDVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHCYNALIKGYCDLGLL 387

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           +EA     ++ +   F S  T+                            LI   C  G 
Sbjct: 388 DEAKSLHLEISKNDCFSSACTYT--------------------------ILICGMCRSGL 421

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM-VARN--------- 264
           V +  ++  ++ + G  P    FN LI  FC+  N  +   L + M + RN         
Sbjct: 422 VGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQ 481

Query: 265 ---RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
              R  D  + + ++  LC S   L+AY +   L + G+ P+ + Y  +IHG CK G + 
Sbjct: 482 GANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNIN 541

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A K++ E+  KGL P+  TY ++I+G    +  E+A  +  ++L  G    T  Y + +
Sbjct: 542 GAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFM 601

Query: 382 AGLCLHGRTDEAYHLF 397
              C   +   A+ L+
Sbjct: 602 TWSCRRNKITLAFSLW 617



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 121/281 (43%), Gaps = 23/281 (8%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------- 197
           +C SGL+ +A   F+++++ G + S+ T+N+ + G  K    +    L++          
Sbjct: 416 MCRSGLVGDAQQIFNEMEKHGCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSL 475

Query: 198 ------------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
                       D      +++  C+ G + + Y +L Q+ + G  P    +N LI  FC
Sbjct: 476 FLRLSQGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFC 535

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +  N     +L   +  +  +PD+ TY  +INGL  + +  +A+ V + + + G  P T 
Sbjct: 536 KAGNINGAFKLFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITE 595

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           +Y + +   C+   +  A  +W + +      +     S+   + +   +EEA R   EM
Sbjct: 596 VYKSFMTWSCRRNKITLAFSLWLKYLRSIPGRDSEVLKSVEENFEK-GEVEEAVRGLLEM 654

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
             K        Y   + GLC  GR +EA  +F  + +  + 
Sbjct: 655 DFKLNDFQLAPYTIWLIGLCQAGRLEEALKIFFTLEEHNVL 695



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 83/375 (22%), Positives = 149/375 (39%), Gaps = 67/375 (17%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN----------- 139
           + F  +  H G  P +V+ N L D   +A   + A           NP+           
Sbjct: 427 QIFNEMEKH-GCYPSVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLSQGANR 485

Query: 140 -----SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
                SL+  ++ LC+SGLI +A+    +L + G   +I T+N  + G  K    +  +K
Sbjct: 486 VLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNINGAFK 545

Query: 195 LYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           L+ +L         +  G LI    +  +  + + +L Q+L++G  P    +   ++  C
Sbjct: 546 LFKELQLKGLSPDSVTYGTLINGLLSANREEDAFTVLDQILKNGCTPITEVYKSFMTWSC 605

Query: 246 EKKNF---------------GRVSELLHTMVARNRAPDNFT---YEEVINGLCKSRKRLE 287
            +                  GR SE+L ++       +NF     EE + GL +   +L 
Sbjct: 606 RRNKITLAFSLWLKYLRSIPGRDSEVLKSV------EENFEKGEVEEAVRGLLEMDFKLN 659

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
            +++               YT  + GLC+ G L +A K++F +    +L    +   +I+
Sbjct: 660 DFQL-------------APYTIWLIGLCQAGRLEEALKIFFTLEEHNVLVTPPSCVKLIY 706

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL-HGRTDEAYHLFEEMAQKGIF 406
              ++ NL+ A  +    +DKGY       N L+  L     + + A+ L   M   G  
Sbjct: 707 RLLKVGNLDLAAEIFLYTIDKGYMLMPRICNRLLKSLLRSEDKRNRAFDLLSRMKSLGYD 766

Query: 407 RDVITYNT---LIQG 418
            D   + T   L+QG
Sbjct: 767 LDSHLHQTTKFLLQG 781



 Score = 39.3 bits (90), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 22/87 (25%), Positives = 39/87 (44%)

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            +  +I  Y ++D +E+A    + M D        TYNT++  +        A  ++  M
Sbjct: 128 AFTVLIQAYAKMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRKEVVLLALGIYNRM 187

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +     ++ T++ LI G CK GK  N
Sbjct: 188 LKLNCLPNIATFSILIDGMCKSGKTQN 214


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 167/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++V+ + L +    ++    A+  +D    TG+ PN  +    I  L       EA
Sbjct: 146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGYLI-----QA 208
                ++   G    + T+   + G  K   TDL + L + +    +E G LI       
Sbjct: 206 VALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDG 265

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +  + +   L +++   G+ P    ++ LIS  C    +   S LL  M+ R   PD
Sbjct: 266 LCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +I+   K  K +EA ++++++ +R   P  V Y+++I+G C    L +A++M+ 
Sbjct: 326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K   P+  +Y+++I G+C+   ++E   L +EM  +G    TVTY TLI GL   G
Sbjct: 386 FMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAG 445

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F+EM   G+  +++TYNTL+ G CK GK+
Sbjct: 446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 177/336 (52%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDLV+  V+ + L +     +A   ++ ++     P        I  LC++  +++A
Sbjct: 216 GCQPDLVTYGVVVNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDA 275

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 276 LNLFKEMETKGIRPNVVTY-SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 334

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK+ E  +L  ++++  + P    ++ LI+ FC         ++   MV+++  P
Sbjct: 335 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 394

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  +I G CK+++  E   +F ++ +RG V +TV YTT+I GL + G    A++++
Sbjct: 395 DVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIF 454

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G+ PN  TYN+++ G C+   LE+A  + + +       T  TYN +I G+C  
Sbjct: 455 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 514

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+ ++ + LF  ++ KG+  DV+ YNT+I G+C++G
Sbjct: 515 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKG 550



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 166/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P+ V+ N L   L    +A      +D + + G  P+  +  + +  LC+ G  + A
Sbjct: 181 GYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLA 240

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K+++  +   +  + + + G  K    D    L+ ++   G          LI  
Sbjct: 241 FILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISC 300

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  ++E  + P+   F+ LI  F ++       +L   MV R+  P 
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPS 360

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C   +  EA ++F  +  +   PD V Y+T+I G CK   + +  +++ 
Sbjct: 361 IVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFR 420

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TY ++I G  +  + + A+ + KEM+  G     +TYNTL+ GLC +G
Sbjct: 421 EMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNG 480

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +FE + +  +   + TYN +I+G CK GK+
Sbjct: 481 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 517



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 155/338 (45%), Gaps = 15/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++V+ + L   L      + A ++  D ++    +P+  +    I    + G + E
Sbjct: 286 GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INPDVFTFSALIDAFVKEGKLVE 344

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   + ++ +  +  SI T++S + G    DR D   +++          D++    LI+
Sbjct: 345 AEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIK 404

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   +V EG EL R++ + GLV     +  LI    +  +     E+   MV+    P
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPP 464

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++GLCK+ K  +A  VF  L+     P    Y  +I G+CK G + D   ++
Sbjct: 465 NIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ P+   YN+MI G+CR  + EEA  L KEM + G    +  YNTLI      
Sbjct: 525 CNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRD 584

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + +  L +EM   G   D  T   L+     +G++
Sbjct: 585 GDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRL 621



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 142/296 (47%), Gaps = 13/296 (4%)

Query: 144 YIQCLCESGL----IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           Y + L  +GL    +++A   F ++ +   F SI  ++  L    K+++ D+V  L   +
Sbjct: 48  YREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQM 107

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G          LI  FC   ++     +L ++++ G  P     + L++ +C  K  
Sbjct: 108 QNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRI 167

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                L+  M      P+  T+  +I+GL    K  EA  + + +  +G  PD V Y  V
Sbjct: 168 SEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVV 227

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           ++GLCK G    A  +  +M    L P    Y ++I G C+  ++++A  L KEM  KG 
Sbjct: 228 VNGLCKRGDTDLAFILLNKMEQGKLEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGI 287

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               VTY++LI+ LC +GR  +A  L  +M ++ I  DV T++ LI  + KEGK+V
Sbjct: 288 RPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLV 343


>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
          Length = 722

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/430 (25%), Positives = 191/430 (44%), Gaps = 51/430 (11%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGF 102
           I+ +V  +  T    E  L    P   F       + +++Q    L  RFF W      F
Sbjct: 37  ISNEVLTVMETVNPMEDALEKLAP---FLSSEIVNDVMREQRRPELGFRFFIWTTRRRSF 93

Query: 103 SPDLVSCNVLFDSLVEARAFKV---AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
               V+ N++ D L +   F      ++ L ++     P +  + I    +SG+ E+A  
Sbjct: 94  R-SWVTHNLVIDMLAKDDGFDTYWKILEELKNSNIQIPPPTFSVLIAAYAKSGMAEKAVE 152

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
           +F K+K+ G    + T+NS L   ++ +   L   +Y+ +++  Y         L+   C
Sbjct: 153 SFGKMKDFGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLC 212

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +GK  +  ++  ++ + G+ P    +  ++S  C+ K    V  LL+TM      PD+ 
Sbjct: 213 KNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSI 272

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV----------------------------- 301
           T   +++G CK  +  EA+ +    ++ GYV                             
Sbjct: 273 TCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM 332

Query: 302 ------PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
                 PD V+YT +I G C++G +  A  M  +M  +GL P+ Y YN++I G+C +  L
Sbjct: 333 FKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLL 392

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           ++A+ L  E+       T+ TY  LI G+C +G  DEA  +F +M   G    ++T+N L
Sbjct: 393 DKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNAL 452

Query: 416 IQGYCKEGKI 425
           I G CK G++
Sbjct: 453 IDGLCKAGEL 462



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 147/313 (46%), Gaps = 12/313 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  PD+ + N +   +V+   F +A+   +      ++PN  +  + +  LC++G  ++
Sbjct: 160 FGCKPDVFTYNSILHVMVQKEVFLLALAVYNQMLKLNYNPNRATFVILLNGLCKNGKTDD 219

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A   F ++ + G+  +   +   L G  +  RTD V +L + +  SG          L+ 
Sbjct: 220 ALKMFDEMTQKGIPPNTMIYTIILSGLCQAKRTDDVHRLLNTMKVSGCCPDSITCNALLD 279

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G++ E + LL+   ++G V     ++ LI      K +  V E    M      P
Sbjct: 280 GFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKMFKAGIEP 339

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I G C+      A  + ND+ +RG  PDT  Y  +I G C +G L  AR + 
Sbjct: 340 DVVLYTILIRGFCEVGMVDYALNMLNDMTQRGLSPDTYCYNALIKGFCDVGLLDKARSLQ 399

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            E+      P   TY  +I G CR   L+EA+++  +M + G   + +T+N LI GLC  
Sbjct: 400 LEISKNDCFPTSCTYTILICGMCRNGLLDEARQIFNQMENLGCSPSIMTFNALIDGLCKA 459

Query: 388 GRTDEAYHLFEEM 400
           G  +EA HLF +M
Sbjct: 460 GELEEARHLFYKM 472



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/327 (19%), Positives = 126/327 (38%), Gaps = 55/327 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +  G SPD    N L     +     +A  + ++   +  F P   +  + I  +C +GL
Sbjct: 368 TQRGLSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCF-PTSCTYTILICGMCRNGL 426

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-----------IES 202
           ++EA   F++++ +G   SI T+N+ + G  K    +    L++ +           +  
Sbjct: 427 LDEARQIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKNPSLFLRLSQ 486

Query: 203 GY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF------- 250
           G          F    +  + + +L Q++++G  P +  +  L++  C K          
Sbjct: 487 GADRVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLW 546

Query: 251 ------------------------GRVSELLHTMVARNRAPDNF---TYEEVINGLCKSR 283
                                   G + + +  ++  N   +NF    Y   + GLC++R
Sbjct: 547 LKYLRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQAR 606

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +  EA ++F  LKE     +      +I+GLCK G L  A  ++   + KG +      N
Sbjct: 607 RSEEALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKGFMLMPRICN 666

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGY 370
            ++      D ++ A  L   M   GY
Sbjct: 667 QLLRSLILQDKMKHALDLLNRMNSAGY 693



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 68/348 (19%), Positives = 126/348 (36%), Gaps = 57/348 (16%)

Query: 112 LFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           L D L  A+ +    ++   +   G  P+     + I+  CE G+++ A    + + + G
Sbjct: 312 LIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVGMVDYALNMLNDMTQRG 371

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGY 219
           +      +N+ + G   +   D    L  ++ ++           LI   C +G + E  
Sbjct: 372 LSPDTYCYNALIKGFCDVGLLDKARSLQLEISKNDCFPTSCTYTILICGMCRNGLLDEAR 431

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM-VARNRAPDNFT------- 271
           ++  Q+   G  P    FN LI   C+         L + M + +N  P  F        
Sbjct: 432 QIFNQMENLGCSPSIMTFNALIDGLCKAGELEEARHLFYKMEIGKN--PSLFLRLSQGAD 489

Query: 272 -YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF-- 328
              +  NG  +  +  +A+RV + + + G  P + +Y  ++   C+ G L  A  +W   
Sbjct: 490 RVMDTANGFHRVDREEDAFRVLDQMVKNGCTPSSAVYKCLMTWSCRKGKLSVAFSLWLKY 549

Query: 329 ----------------EMIHKG--------LLPNEYTYNSM--------IHGYCRIDNLE 356
                           E   KG        LL   +  N+         + G C+    E
Sbjct: 550 LRSLPSQEDETLKLAEEHFEKGELEKAVRCLLEMNFKLNNFEIAPYTIWLIGLCQARRSE 609

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           EA ++   + +        +   LI GLC  G  + A  +F    +KG
Sbjct: 610 EALKIFLVLKECQMDVNPPSCVMLINGLCKDGNLEMAVDIFLYTLEKG 657


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 159/336 (47%), Gaps = 12/336 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           Y   P ++S N + + LVE+  FK A      + + G  P+  +  + I+  C +     
Sbjct: 105 YNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCRTKRPHS 164

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    + +   G   +   + + + G  + +     ++L++D++  G          L+ 
Sbjct: 165 ALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFNKLLH 224

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G+V E   LL +VL+ G+      FN  I   C K        +L +++     P
Sbjct: 225 TLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTP 284

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I GLCK+   +EA +  + L   G  PD   Y T+I G CKMG L +A K+ 
Sbjct: 285 DVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKIL 344

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              I KG +P+E+TY S+I+G C+ D ++ A  L    L KG   T + YN LI GLC  
Sbjct: 345 QGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQE 404

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G   +A  +  EM++ G   D+ TYN +I G CK G
Sbjct: 405 GLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMG 440



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L  +L +    + +   L+     G   N  +  ++IQ LC  G++  A
Sbjct: 211 GIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGA 270

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   G+   + T+N+ + G  K        K  H L+  G          LI  
Sbjct: 271 MSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDG 330

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G +    ++L+  +  G VP+   +  LI+  C+     R   L +  + +   P 
Sbjct: 331 YCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPT 390

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I GLC+    L+A ++ N++ E G   D   Y  VI+GLCKMG + DA  +  
Sbjct: 391 VILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMN 450

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           + I KG +P+ +T+N++I GYC+   +E   ++  +M   G     +TYN+++ GL    
Sbjct: 451 DAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAV 510

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++    FE M +KG   + ITYN L +  CK GK+
Sbjct: 511 KNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKV 547



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 12/310 (3%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MDF +     P+  S    +  L ESG  ++A   F ++K +G+   + T+   +    +
Sbjct: 102 MDFYNC---EPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTIRIKSFCR 158

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R     +L ++++  G          ++  F  +    E YEL   +L  G+ P+ + 
Sbjct: 159 TKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVST 218

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FNKL+   C+K        LL+ ++ +    + FT+   I GLC+      A  + + + 
Sbjct: 219 FNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVI 278

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  PD V Y T+I GLCK   + +A K   ++++ GL P+ +TYN++I GYC++  L+
Sbjct: 279 REGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQ 338

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A+++ +  + KG+     TY +LI GLC +   D A  LF     KG+   VI YN LI
Sbjct: 339 NAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLI 398

Query: 417 QGYCKEGKIV 426
           +G C+EG I+
Sbjct: 399 KGLCQEGLIL 408



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 152/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   +L + N+    L        AM  LDS    G +P+  +    I  LC++  + EA
Sbjct: 246 GMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEA 305

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                KL   G+     T+N+ + G  K+       K+    I  G+         LI  
Sbjct: 306 EKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLING 365

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C + ++     L    L  GL P    +N LI   C++    +  ++++ M     + D
Sbjct: 366 LCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSD 425

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  VINGLCK     +A  + ND   +GYVPD   + T+I G CK   +    ++  
Sbjct: 426 IWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILN 485

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+ P+  TYNS+++G  +    E+     + M++KG     +TYN L   LC  G
Sbjct: 486 KMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAG 545

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +EA  L +E+  KGI  D +++ T+I G+   G +
Sbjct: 546 KVNEALDLVDEILNKGITPDTVSFATIISGFANNGDL 582



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/359 (27%), Positives = 161/359 (44%), Gaps = 30/359 (8%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST 132
           P      LKQQ + L ++  F  +    GF   L++   +   L     F    + L  T
Sbjct: 7   PKHVAAVLKQQKDPLKALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAET 66

Query: 133 GFSPNPNSLE-LYIQCL---CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
               + + LE +YI  +      G ++EA   F ++       S+ ++N+ +        
Sbjct: 67  RMDIDNSLLEGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIM-------- 118

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
                   + L+ESGY  QA          +++  ++   G+VP+   F   I  FC  K
Sbjct: 119 --------NILVESGYFKQA----------HKVFLRMKNVGIVPDVYTFTIRIKSFCRTK 160

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                  LL+ MV++    +   Y  V+ G  +   R+EAY +FND+   G  PD   + 
Sbjct: 161 RPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIGIFPDVSTFN 220

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            ++H LCK G + ++ ++  +++ KG+  N +T+N  I G CR   L  A  +   ++ +
Sbjct: 221 KLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQGLCRKGMLSGAMSMLDSVIRE 280

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G     VTYNTLI GLC +    EA     ++   G+  D  TYNTLI GYCK G + N
Sbjct: 281 GLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQN 339



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 156/338 (46%), Gaps = 19/338 (5%)

Query: 101 GFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +PD+V+ N L        ++VEA  +   +  L + G  P+  +    I   C+ G++
Sbjct: 281 GLTPDVVTYNTLICGLCKNSNVVEAEKY---LHKLVNGGLEPDGFTYNTLIDGYCKMGML 337

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           + A          G      T+ S + G  + D  D    L++  +  G          L
Sbjct: 338 QNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNML 397

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+  C +G + +  +++ ++ E+G   +   +N +I+  C+       + L++  +A+  
Sbjct: 398 IKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGY 457

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FT+  +I+G CK  K     ++ N +   G  PD + Y +V++GL K     D  +
Sbjct: 458 VPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLME 517

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            +  M+ KG +PN+ TYN +    C+   + EA  L  E+L+KG    TV++ T+I+G  
Sbjct: 518 TFETMVEKGCVPNKITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFA 577

Query: 386 LHGRTDEAYHLFEEMA-QKGIFRDVITYNTLIQGYCKE 422
            +G    AY LF  M  Q  +     TYN +I  + ++
Sbjct: 578 NNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFAEK 615



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 150/338 (44%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  +   L + L +      A+   ++    G  P      + I+ LC+ GLI +A
Sbjct: 351 GFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQEGLILQA 410

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++ E G    I T+N  + G  K+        L +D I  GY         LI  
Sbjct: 411 LQMMNEMSENGCSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDG 470

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+    ++L ++   G+ P+   +N +++   +      + E   TMV +   P+
Sbjct: 471 YCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPN 530

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +   LCK+ K  EA  + +++  +G  PDTV + T+I G    G L  A +++ 
Sbjct: 531 KITYNILTESLCKAGKVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFR 590

Query: 329 EMIHKGLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            M  +  + +   TYN MI+ +    +L   ++L  EM   G    T TY  +I G C+ 
Sbjct: 591 RMGEQYKVSHTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCIT 650

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G TD  Y    EM +KG    + T+  +I   C + ++
Sbjct: 651 GNTDSGYKFLLEMIEKGFIPSLTTFGRVINCLCVQHRV 688


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 147/281 (52%), Gaps = 9/281 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           + +A   FS + +   F SI  +N  L   +K+ + D+V  L          +DL     
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I  FC   +VS    +L ++L+ G  P+      L++ FC +        L+  MV   
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD   Y  +I+ LCK+++  +A+  F +++ +G  P+ V YT +++GLC      DA 
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +MI K + PN  TY++++  + +   + EAK L +EM+        VTY++LI GL
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGL 305

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           CLH R DEA  +F+ M  KG   DV++YNTLI G+CK  ++
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 346



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 170/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+   L +          A+  +D     G+ P+  +    I  LC++  + +A
Sbjct: 150 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 209

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
           F  F +++  G+  ++ T+ + + G     R     +L  D+I+            L+ A
Sbjct: 210 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GKV E  EL  +++   + P+   ++ LI+  C        +++   MV++    D
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 329

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK+++  +  ++F ++ +RG V +TV Y T+I G  + G +  A++ + 
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+ P+ +TYN ++ G C    LE+A  + ++M  +      VTY T+I G+C  G
Sbjct: 390 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 449

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + +EA+ LF  ++ KG+  D++TY T++ G C +G
Sbjct: 450 KVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  N L  ++V+ + + V +     ++  G   +  +  + I C C    +  A   
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G      T  S + G  + +R      L   ++E GY         +I + C 
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V++ ++  +++   G+ P    +  L++  C    +   + LL  M+ +   P+  T
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++   K+ K LEA  +F ++      PD V Y+++I+GLC    + +A +M+  M+
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMV 322

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG L +  +YN++I+G+C+   +E+  +L +EM  +G    TVTYNTLI G    G  D
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A   F +M   GI  D+ TYN L+ G C  G++
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 416



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   DL + N++ +         +A+  L      G+ P+  ++   +   C    + +A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+ E+G    I  +N+ +    K  R +  +  + ++   G          L+  
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  + S+   LL  +++  + P    ++ L+  F +        EL   MV  +  PD
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGLC   +  EA ++F+ +  +G + D V Y T+I+G CK   + D  K++ 
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TYN++I G+ +  ++++A+    +M   G      TYN L+ GLC +G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A  +FE+M ++ +  D++TY T+I+G CK GK+
Sbjct: 415 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 143/325 (44%), Gaps = 47/325 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCES------ 151
           G+ PD+V+ N + DSL + +    A DF   ++  G  PN  +    +  LC S      
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 152 -----------------------------GLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
                                        G + EA   F ++  M +   I T++S + G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLING 304

Query: 183 CIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
               DR D   +++          D++    LI  FC   +V +G +L R++ + GLV  
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N LI  F +  +  +  E    M     +PD +TY  ++ GLC + +  +A  +F 
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+++R    D V YTTVI G+CK G + +A  ++  +  KGL P+  TY +M+ G C   
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYN 378
            L E + L+ +M  +G  +   T +
Sbjct: 485 LLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K+++  +L   +++    P    FN+L+S   + K +  V  L   M       D +T
Sbjct: 63  DIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 122

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  VIN  C   +   A  +   + + GY PD V   ++++G C+   + DA  +  +M+
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+   YN++I   C+   + +A    KE+  KG     VTY  L+ GLC   R  
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +A  L  +M +K I  +VITY+ L+  + K GK++
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVL 277



 Score = 42.7 bits (99), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           ++ L+S+  ++N     FF     Q  +V  +  FF  +   +G SPD+ + N+L   L 
Sbjct: 358 QRGLVSNTVTYNTLIQGFF-----QAGDVDKAQEFFSQMD-FFGISPDIWTYNILLGGLC 411

Query: 118 EARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +    + A+   +          +  Y   I+ +C++G +EEA+  F  L   G+   I 
Sbjct: 412 DNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIV 471

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC--NDGKVSEGYELLRQVLEDGLVP 232
           T+ + + G         V  LY  + + G L++  C  +DG ++   EL++++L  G  P
Sbjct: 472 TYTTMMSGLCTKGLLHEVEALYTKMKQEG-LMKNDCTLSDGDITLSAELIKKMLSCGYAP 530

Query: 233 ENTAFNKLISRFCEK 247
             +    + S  C+K
Sbjct: 531 --SLLKDIKSGVCKK 543


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 170/347 (48%), Gaps = 15/347 (4%)

Query: 94  QWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           +WL++    GF  D  +C ++ D+  +       + +   +   G +PN  +    I  L
Sbjct: 245 RWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGL 304

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-GY--- 204
           C+ G I++AF    ++   G   ++ T  + + G  K   T+  ++L+  L+ S GY   
Sbjct: 305 CKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPN 364

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I  +C + K++    LL ++ E GLVP    +  LI   C+  NF R  EL+ 
Sbjct: 365 VHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMD 424

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M     +P+ +TY  +I+GLCK     EAYR+ N +   G   D V YT ++   C+  
Sbjct: 425 LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQA 484

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               +   + +M+  G  P+ ++Y ++I  +CR   ++E++RL +E +  G   T  TY 
Sbjct: 485 DTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYT 544

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++I G C +G T  A  LF+ M+  G   D ITY  LI G CKE K+
Sbjct: 545 SMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P++ +   L D L +     +AF++ +  + S G+ PN ++    I   C+   +  
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    S+++E G+  +  T+ + + G  K+      ++L   + + G+         +I 
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + E Y LL +V   GL  +   +  L+S  C + +  R     + M+     P
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTP 503

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  +I+  C+ ++  E+ R+F +    G +P    YT++I G C+ G    A K++
Sbjct: 504 DIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLF 563

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M + G  P+  TY ++I G C+   L++A+ L+  M+DKG     VT  TL    C  
Sbjct: 564 QRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKK 623

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  A ++ + + ++   R   T NTL++  C EGK+
Sbjct: 624 DDSSTAINVLDRLEKRQWIR---TVNTLVRKLCSEGKL 658



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 127/249 (51%), Gaps = 10/249 (4%)

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           +AL+G   ++R + V +          ++  F  +GK+ E   ++ ++   GLVP     
Sbjct: 142 TALIGNKNLERANEVMQC---------MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTL 192

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N ++              +   M  R  +PD  +++ ++   C   + LEA R  N + E
Sbjct: 193 NCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVE 252

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG++ D    T +I   C+ G++      +++M+  GL PN   + ++I+G C+  ++++
Sbjct: 253 RGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQ 312

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLI 416
           A  L +EM+ +G+     T+ TLI GLC  G T++A+ LF ++ +   ++ +V TY  +I
Sbjct: 313 AFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMI 372

Query: 417 QGYCKEGKI 425
            GYCKE K+
Sbjct: 373 NGYCKEDKL 381



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+  +     L+EA  +  EM ++G   +T T N ++      G  + A ++F EM Q+G
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           +  D +++  ++   C  G+++
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVL 241


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 198/406 (48%), Gaps = 24/406 (5%)

Query: 40  YTEIAKQVCKITRTKPRWE-----QTLLSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +      T L  IP+ F++N      + L  +N    ++   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN---ILLKGLCDENRSQEALELL 185

Query: 94  QWLHSHYG-FSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           Q +    G   PD+VS   + +   +     +A+    + LD  G  PN  +    I  L
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDR-GILPNVVTYSSIIAAL 244

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW---KLYHDLIESGY 204
           C++  +++A    + + + GV  + +T+NS + G C      + +    K++ D +E   
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+   C +G+ +E  ++   + + GL PE T +  L+  +  K     +  LL  
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P+++ +  +I    K  K  +A  VF+ ++++G  PDTV Y TVI  LCK G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA + + +MI + L P    YNS+IH  C  D  ++AK L  EMLD+G    T+ +N+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I   C  GR  E+  LF+ M + G+  D+ITY+TLI GYC  GK+
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 17/347 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I F + +HS  G  PD+V+ N L D L +      A    DS    G  P   +    +
Sbjct: 288 AIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----KIDRTDLVWK------ 194
           Q     G + E       +   G+  +   +  ++L C      K+D+  LV+       
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVF--SILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  D +  G +I   C  G+V +      Q++++ L P N  +N LI   C    + +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           EL+  M+ R    D   +  +I+  CK  + +E+ ++F+ +   G  PD + Y+T+I G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C  G + +A K+   M+  G+ P+  TYN++I+GYC+I  +E+A  L +EM   G     
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +TYN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 12/264 (4%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQ 224
           T+   +  C    R DL +    ++I+ G+         L++  C D + S+  ++ LR+
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVINGLCKS 282
           + + G +P   ++N L+   C++       ELL  M     +  PD  +Y  VING  K 
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +AY  ++++ +RG +P+ V Y+++I  LCK   +  A ++   M+  G++PN  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           NS++HGYC     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F+ M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
           +G+  ++ TY TL+QGY  +G +V
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALV 356



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESG 152
           +  G  P++ S N+L   L +    + A++ L     D     P+  S    I    + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------- 205
            +++A+  + ++ + G+  ++ T++S +    K    D   ++   ++++G +       
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 206 --IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
             +  +C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  ++ G       +E + + + +   G  P+  +++ +I    K G +  A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +GL P+  TY ++I   C+   +E+A R  ++M+D+      + YN+LI  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC+  + D+A  L  EM  +GI  D I +N++I  +CKEG+++
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +    I  LC+SG +E+A   F ++ +  +      +NS +      D+ D  
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P+   ++ LI  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C        ++LL +MV+    PD  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y  ++ GL +      A++++  +   G      TYN ++HG C+ +  +EA R+ +
Sbjct: 584 IITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +        T T+N +I  L   GR DEA  LF  ++  G+  DV TY+ + +   ++G
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/159 (29%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I   C + +    +    ++ ++G+  D + +T ++ GLC      DA  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 327 WF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIA 382
               M   G +PN ++YN ++ G C  +  +EA  L + M D G G+     V+Y T+I 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG-GDCPPDVVSYTTVIN 207

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G    G  D+AY  + EM  +GI  +V+TY+++I   CK
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGL-CKMGWLG-----DARKMWFEMIHKG---LLP 337
           +A  VF++L  RG           I+GL C +  +       A   +  M   G   + P
Sbjct: 37  DARHVFDELLRRGR-------GASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTP 89

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL- 396
           N  TY  +I   C    L+        ++ KG+    + +  L+ GLC   RT +A  + 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              M Q G   +V +YN L++G C E +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENR 177


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 177/351 (50%), Gaps = 19/351 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELY 144
           +I+ F+ +  H GF P L +C VL +SL +AR     +KV    +   G  PN +   + 
Sbjct: 146 AIQVFEHMRVH-GFKPHLHACTVLLNSLAKARLTNMVWKVYKKMV-RVGVVPNIHIFNVL 203

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL-LGCIK---------IDRTDLVWK 194
           I   C+SG +E+A    ++++   +F  + T+N+ + L C K          DR +    
Sbjct: 204 IHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMER-GG 262

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           +  D++    LI  FC +G++ E   L R++  +G  P +  +  LI  +C   +     
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEAL 320

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            L   M      P   TY  ++  LC+  K  +A R+ N++ ER   PD V   T+I+  
Sbjct: 321 RLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAY 380

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK+G +G A K+  +M+  GL P+++T+ ++IHG+C++  ++ AK    EMLD G+  + 
Sbjct: 381 CKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSY 440

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TY+ L+         +    L +E+++KG+F D+  Y  LI+  CK  KI
Sbjct: 441 STYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKI 491



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 184/406 (45%), Gaps = 51/406 (12%)

Query: 41  TEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQ-NNVLLSIRFFQWLHSH 99
           T++AK VC I   K  W   L  ++ S N    +  +  L    +   +S  FF+W+ S+
Sbjct: 11  TQLAKIVCGIV-VKGHWNSLLKPNVGS-NLTSTILNQVLLNLSLDGCCVSWAFFKWVESN 68

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF------------------SPNPNS- 140
                 L S   +  +L + + FK A + L+                       P+ NS 
Sbjct: 69  LNHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQ 128

Query: 141 -LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
            L   +     S + ++A   F  ++  G    +      L    K   T++VWK+Y   
Sbjct: 129 ILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVY--- 185

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                                  ++++  G+VP    FN LI   C+  +  +  +LL+ 
Sbjct: 186 -----------------------KKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE 222

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M +R   PD FTY  +I+  CK     EA  + + ++  G  PD V Y ++I+G C+ G 
Sbjct: 223 MESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGR 282

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A +++ E+   G  PN  TY ++I GYCR+++LEEA RL + M  +G     VTYN+
Sbjct: 283 MREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNS 340

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++  LC  G+  +A  L  EM+++ +  D +T NTLI  YCK G +
Sbjct: 341 ILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDM 386



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 12/276 (4%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           G SPD+V+ N L      E R  +    F +  G +PN  +    I   C    +EEA  
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALR 321

Query: 160 AFSKLKEMGVFGSIKTWNSALL-----GCIKIDRTDLV-----WKLYHDLIESGYLIQAF 209
               ++  G+   + T+NS L      G IK D   L+      K+  D +    LI A+
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIK-DANRLLNEMSERKVEPDNVTCNTLINAY 380

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G +    ++ +++LE GL P+   F  LI  FC+        E L  M+    +P  
Sbjct: 381 CKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSY 440

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++       +    R+ ++L  +G   D  +Y  +I  LCK+  +  A +++  
Sbjct: 441 STYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTL 500

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           M  KG+  +   Y S+ + Y +      A  +  EM
Sbjct: 501 MQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 15/260 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYI 145
           ++R F+ ++   G +P+ V+   L D        + A+   + ++  G  P   +    +
Sbjct: 286 ALRLFREIN---GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL 342

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
           + LCE G I++A    +++ E  V     T N+ +    KI       K+   ++E+G  
Sbjct: 343 RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLK 402

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  FC   +V    E L ++L+ G  P  + ++ L+  + ++ N   V  L
Sbjct: 403 PDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRL 462

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              +  +    D   Y  +I  LCK  K   A R+F  ++ +G   D+V+YT++ +   K
Sbjct: 463 PDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFK 522

Query: 317 MGWLGDARKMWFEMIHKGLL 336
            G    A  M  EM  + L+
Sbjct: 523 AGKAIAASDMLDEMDKRRLM 542


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/347 (29%), Positives = 170/347 (48%), Gaps = 15/347 (4%)

Query: 94  QWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           +WL++    GF  D  +C ++ D+  +       + +   +   G +PN  +    I  L
Sbjct: 245 KWLNAMVERGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGL 304

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-GY--- 204
           C+ G I++AF    ++   G   ++ T  + + G  K   T+  ++L+  L+ S GY   
Sbjct: 305 CKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPN 364

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I  +C + K++    LL ++ E GLVP    +  LI   C+  NF R  EL+ 
Sbjct: 365 VHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMD 424

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M     +P+ +TY  +I+GLCK     EAYR+ N +   G   D V YT ++   C+  
Sbjct: 425 LMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQA 484

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               +   + +M+  G  P+ ++Y ++I  +CR   ++E++RL +E +  G   T  TY 
Sbjct: 485 DTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYT 544

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++I G C +G T  A  LF+ M+  G   D ITY  LI G CKE K+
Sbjct: 545 SMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKL 591



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 159/338 (47%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P++ +   L D L +     +AF++ +  + S G+ PN ++    I   C+   +  
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    S+++E G+  +  T+ + + G  K+      ++L   + + G+         +I 
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + E Y LL +V   GL  +   +  L+S  C + +  R     + M+     P
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTP 503

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  +I+  C+ ++  E+ R+F +    G +P    YT++I G C+ G    A K++
Sbjct: 504 DIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLF 563

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M + G  P+  TY ++I G C+   L++A+ L+  M+DKG     VT  TL    C  
Sbjct: 564 QRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKK 623

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  A ++ + + ++   R   T NTL++  C EGK+
Sbjct: 624 DDSSTAINVLDRLEKRQWIR---TVNTLVRKLCSEGKL 658



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 126/249 (50%), Gaps = 10/249 (4%)

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           +AL+G   ++R + V +          ++  F  +GK+ E   ++ ++   GLV      
Sbjct: 142 TALIGNKNLERANEVMQC---------MVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTL 192

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N ++              +   M  R  +PD  +++ ++   C   + LEA +  N + E
Sbjct: 193 NCVLDVAVGMGLVEIAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVE 252

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG++ D    T +I   C+ G++      +++M+  GL PN   + ++I+G C+  ++++
Sbjct: 253 RGFIVDNATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQ 312

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLI 416
           A  L +EM+ +G+     T+ TLI GLC  G T++A+ LF ++ +   ++ +V TY  +I
Sbjct: 313 AFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMI 372

Query: 417 QGYCKEGKI 425
            GYCKE K+
Sbjct: 373 NGYCKEDKL 381



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/218 (30%), Positives = 107/218 (49%), Gaps = 7/218 (3%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL---LHTMVARNRAPDN 269
           G V     +  ++ + G+ P+  +F  ++   C   N GRV E    L+ MV R    DN
Sbjct: 203 GLVEIAENMFVEMCQRGVSPDCVSFKLMVVACC---NMGRVLEAEKWLNAMVERGFIVDN 259

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            T   +I+  C+          F  + E G  P+ + +T +I+GLCK G +  A ++  E
Sbjct: 260 ATCTLIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEE 319

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKGYGETTVTYNTLIAGLCLHG 388
           M+ +G  PN YT+ ++I G C+    E+A RL  +++   GY     TY  +I G C   
Sbjct: 320 MVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED 379

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + + A  L   M ++G+  +  TY TLI G+CK G  V
Sbjct: 380 KLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFV 417



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/82 (24%), Positives = 42/82 (51%)

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+  +     L+EA  +  EM ++G   +T T N ++      G  + A ++F EM Q+G
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVEIAENMFVEMCQRG 219

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           +  D +++  ++   C  G+++
Sbjct: 220 VSPDCVSFKLMVVACCNMGRVL 241


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 152/292 (52%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   F   +E  +     T    L   +K+    LVW  Y +++E GY
Sbjct: 73  INAYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ +    +  +  +
Sbjct: 133 PASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFK 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  EA  +FN++ ++G VP+ V +TT+I G C
Sbjct: 193 LKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A + + +M+ +  LP+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+ L E M ++ I  D + Y  LI G C+EG+  +
Sbjct: 313 TYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATD 364



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 148/316 (46%), Gaps = 12/316 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F         P SL  +   +   C+ G I  A   F  +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  +KL + +  SG          LI   C + K+
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKM 222

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           +E  +L  ++L+ GLVP    F  LI   C+        E    M+++   PD  TY  +
Sbjct: 223 NEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTL 282

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A  + ++++ +G  PD + YTT+I G CK G L  A ++   M+ + +
Sbjct: 283 IYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESI 342

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G      TY  +I   C       A  
Sbjct: 343 RLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAK 402

Query: 396 LFEEMAQKGIFRDVIT 411
           L +EM ++G    V+T
Sbjct: 403 LLKEMQRQGHVPCVVT 418



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 29/169 (17%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
           F PDL++ N L   L +    K A D LD     G  P+  +    I   C+ G ++ AF
Sbjct: 272 FLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAF 331

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               +L+E  V  SI+                       D +    LI   C +G+ ++ 
Sbjct: 332 ----ELRETMVKESIRL----------------------DDVAYTALISGLCQEGRATDA 365

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            ++LR++L  GL P+N  +  +I+ FC+K++    ++LL  M  +   P
Sbjct: 366 EKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVP 414


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 168/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   ++ + N++ ++L +   F     FL   +  G   +  +    I   C  GL+EEA
Sbjct: 113 GIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEA 172

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   + + + G+  S+ T+N+ + G  K  R      +  +++  G          L+  
Sbjct: 173 FEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVE 232

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C     SE  E+  ++L  G+VP+  +F+ LI+ F   ++  +       M      PD
Sbjct: 233 SCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPD 292

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  Y  +++G C++   LEA ++ +++ E+G V D + Y T+++GLCK   L DA K++ 
Sbjct: 293 NVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFD 352

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G LP+ YT+ ++IHG+C+  N+ +A  L   M  +      V YNTLI G C  G
Sbjct: 353 EMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVG 412

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A  L++ M  + IF + ITY  LI  YC  G +
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 449



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 165/335 (49%), Gaps = 14/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P L + N + + L +    ARA  + ++ L+  G SP+  +    +   C      E
Sbjct: 183 GLKPSLFTYNAIINGLCKKGRYARAKGILIEMLN-IGLSPDTTTYNTLLVESCRRDNFSE 241

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A   F ++   GV   + +++S +    +    D     + D+ + G          L+ 
Sbjct: 242 AKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMH 301

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C +G + E  ++  ++LE G V +  A+N +++  C++K      +L   MV R   P
Sbjct: 302 GYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALP 361

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +T+  +I+G C+     +A  +F  + +R   PD V Y T+I G CK+G +  A ++W
Sbjct: 362 DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELW 421

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI + + PN  TY  +I+ YC + ++ EA RL   M++KG   T VT NT+I G C  
Sbjct: 422 DGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRS 481

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G + +A      M  KG+  D I+YNTLI G+ +E
Sbjct: 482 GDSSKADEFLGRMIAKGVAPDHISYNTLINGFVRE 516



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 159/328 (48%), Gaps = 44/328 (13%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +L I+   ++  + E   AF  L+  G   SI   NS L G +KID  +L W+++ +++ 
Sbjct: 52  DLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVVR 111

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           SG          ++ A C DGK  +    L ++  +G+  +   +N LI  +C +     
Sbjct: 112 SGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEE 171

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             E++++M  +   P  FTY  +INGLCK  +   A  +  ++   G  PDT  Y T++ 
Sbjct: 172 AFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLV 231

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI-------------------------- 346
             C+     +A++++ EM+ +G++P+  +++S+I                          
Sbjct: 232 ESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVP 291

Query: 347 ---------HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
                    HGYCR  N+ EA ++  EML++G     + YNT++ GLC      +A  LF
Sbjct: 292 DNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLF 351

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EM ++G   D  T+ TLI G+C++G +
Sbjct: 352 DEMVERGALPDFYTFTTLIHGHCQDGNM 379



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDLVS + L       R    A+ +   +   G  P+     + +   C +G + EA
Sbjct: 253 GVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEA 312

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                ++ E G    +  +N+ L G  K        KL+ +++E G L         I  
Sbjct: 313 LKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHG 372

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG +++   L   + +  + P+  A+N LI  FC+     + SEL   M++R   P+
Sbjct: 373 HCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPN 432

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +IN  C      EA+R+++ + E+G  P  V   TVI G C+ G    A +   
Sbjct: 433 HITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLG 492

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI KG+ P+  +YN++I+G+ R DN+++A     +M  +G     +TYN ++ G C  G
Sbjct: 493 RMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQG 552

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           R  EA  +  +M +KGI  D  TY  LI G+  +
Sbjct: 553 RMQEAELVLRKMIEKGINPDRSTYTALINGHVTQ 586



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+++ N + + L + +    A    D     G  P+  +    I   C+ G + +A
Sbjct: 323 GCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKA 382

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI---DRTDLVW------KLYHDLIESGYLIQA 208
              F  + +  +   I  +N+ + G  K+   ++   +W      K++ + I  G LI A
Sbjct: 383 LSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINA 442

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C+ G VSE + L   ++E G+ P     N +I  +C   +  +  E L  M+A+  APD
Sbjct: 443 YCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGVAPD 502

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + +Y  +ING  +     +A+   N +++ G +PD + Y  V++G C+ G + +A  +  
Sbjct: 503 HISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNVVMNGFCRQGRMQEAELVLR 562

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           +MI KG+ P+  TY ++I+G+   DNL EA R H EML +G+    V
Sbjct: 563 KMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 240 LISRFCEKKNFGRVS--ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           LI R   +    RV   E L + +  N   +N  ++ +I    ++RK  E    F  L+ 
Sbjct: 17  LILRMIRRSGVSRVEVVEALVSSMCGNCGTNNLVFDLLIRTYVQARKLREGTEAFRILRS 76

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +GY+       +++ GL K+ W+  A ++  E++  G+  N YT N M++  C+    ++
Sbjct: 77  KGYLVSINACNSLLGGLVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNALCKDGKFDD 136

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            K    EM   G     VTYNTLI   C  G  +EA+ +   MA KG+   + TYN +I 
Sbjct: 137 VKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIIN 196

Query: 418 GYCKEGK 424
           G CK+G+
Sbjct: 197 GLCKKGR 203


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 103/351 (29%), Positives = 177/351 (50%), Gaps = 19/351 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELY 144
           +I+ F+ +  H GF P L +C VL +SL +AR     +KV    +   G  PN +   + 
Sbjct: 146 AIQVFEHMRVH-GFKPHLHACTVLLNSLAKARLTNMVWKVYKKMV-RVGVVPNIHIFNVL 203

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL-LGCIK---------IDRTDLVWK 194
           I   C+SG +E+A    ++++   +F  + T+N+ + L C K          DR +    
Sbjct: 204 IHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMER-GG 262

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           +  D++    LI  FC +G++ E   L R++  +G  P +  +  LI  +C   +     
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEAL 320

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            L   M      P   TY  ++  LC+  K  +A R+ N++ ER   PD V   T+I+  
Sbjct: 321 RLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAY 380

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK+G +G A K+  +M+  GL P+++T+ ++IHG+C++  ++ AK    EMLD G+  + 
Sbjct: 381 CKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSY 440

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TY+ L+         +    L +E+++KG+F D+  Y  LI+  CK  KI
Sbjct: 441 STYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKI 491



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 184/406 (45%), Gaps = 51/406 (12%)

Query: 41  TEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQ-NNVLLSIRFFQWLHSH 99
           T++AK VC I   K  W   L  ++ S N    +  +  L    +   +S  FF+W+ S+
Sbjct: 11  TQLAKIVCGIV-VKGHWNSLLKPNVGS-NLTSTILNQVLLNLSLDGCCVSWAFFKWVESN 68

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF------------------SPNPNS- 140
                 L S   +  +L + + FK A + L+                       P+ NS 
Sbjct: 69  LNHXHSLQSSWTMIHTLAKHKQFKTAQNLLERIAVRDYLSSPSVLNAVVRIHDDPDSNSQ 128

Query: 141 -LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
            L   +     S + ++A   F  ++  G    +      L    K   T++VWK+Y   
Sbjct: 129 ILSWLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVY--- 185

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                                  ++++  G+VP    FN LI   C+  +  +  +LL+ 
Sbjct: 186 -----------------------KKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNE 222

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M +R   PD FTY  +I+  CK     EA  + + ++  G  PD V Y ++I+G C+ G 
Sbjct: 223 MESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREGR 282

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A +++ E+   G  PN  TY ++I GYCR+++LEEA RL + M  +G     VTYN+
Sbjct: 283 MREALRLFREI--NGATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNS 340

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++  LC  G+  +A  L  EM+++ +  D +T NTLI  YCK G +
Sbjct: 341 ILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDM 386



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 117/276 (42%), Gaps = 12/276 (4%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           G SPD+V+ N L      E R  +    F +  G +PN  +    I   C    +EEA  
Sbjct: 262 GVSPDIVTYNSLIYGFCREGRMREALRLFREINGATPNHVTYTTLIDGYCRVNDLEEALR 321

Query: 160 AFSKLKEMGVFGSIKTWNSALL-----GCIKIDRTDLV-----WKLYHDLIESGYLIQAF 209
               ++  G+   + T+NS L      G IK D   L+      K+  D +    LI A+
Sbjct: 322 LREVMEVEGLHPGVVTYNSILRKLCEEGKIK-DANRLLNEMSERKVEPDNVTCNTLINAY 380

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G +    ++ +++LE GL P+   F  LI  FC+        E L  M+    +P  
Sbjct: 381 CKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSY 440

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++       +    R+ ++L  +G   D  +Y  +I  LCK+  +  A +++  
Sbjct: 441 STYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTL 500

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           M  KG+  +   Y S+ + Y +      A  +  EM
Sbjct: 501 MQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 536



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 61/260 (23%), Positives = 113/260 (43%), Gaps = 15/260 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYI 145
           ++R F+ ++   G +P+ V+   L D        + A+   + ++  G  P   +    +
Sbjct: 286 ALRLFREIN---GATPNHVTYTTLIDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSIL 342

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
           + LCE G I++A    +++ E  V     T N+ +    KI       K+   ++E+G  
Sbjct: 343 RKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLK 402

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  FC   +V    E L ++L+ G  P  + ++ L+  + ++ N   V  L
Sbjct: 403 PDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRL 462

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              +  +    D   Y  +I  LCK  K   A R+F  ++ +G   D+V+YT++ +   K
Sbjct: 463 PDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFK 522

Query: 317 MGWLGDARKMWFEMIHKGLL 336
            G    A  M  EM  + L+
Sbjct: 523 AGKAIAASDMLDEMDKRRLM 542


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 160/328 (48%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +V+   L +   +   F+ A+  +DS    GF PN       I  LC++  +  A
Sbjct: 144 GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 203

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F  +++ G+     T+N+                          LI    N G+ ++
Sbjct: 204 LEVFYCMEKKGIRADAVTYNT--------------------------LISGLSNSGRWTD 237

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LLR +++  + P    F  LI  F ++ N      L   M+ R+  P+ FTY  +IN
Sbjct: 238 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 297

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C      +A  +F+ +  +G  PD V Y T+I G CK   + D  K++ EM ++GL+ 
Sbjct: 298 GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVG 357

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +TYN++IHGYC+   L  A+++   M+D G     VTYN L+  LC +G+ ++A  + 
Sbjct: 358 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 417

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E++ +  +  D+ITYN +IQG C+  K+
Sbjct: 418 EDLQKSEMDVDIITYNIIIQGLCRTDKL 445



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 9/280 (3%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           ++AF  F ++ +     SI  +   L    K+++ D+V  LYH         DL     L
Sbjct: 61  DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 120

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC   ++S    LL ++++ G  P       L++ FC+   F     L+ +M     
Sbjct: 121 IHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 180

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+   Y  VINGLCK+R    A  VF  ++++G   D V Y T+I GL   G   DA +
Sbjct: 181 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 240

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M+ + + PN   + ++I  + +  NL EA+ L+KEM+ +       TYN+LI G C
Sbjct: 241 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFC 300

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +HG   +A ++F+ M  KG F DV+TYNTLI G+CK  ++
Sbjct: 301 IHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 340



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 9/237 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    I   C  G + +A   F  +   G F  + T+N+ + G  K  R +   KL
Sbjct: 287 PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 346

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           + ++   G          LI  +C  GK++   ++  ++++ G+ P+   +N L+   C 
Sbjct: 347 FCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCN 406

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                +   ++  +       D  TY  +I GLC++ K  EA+ +F  L  +G  PD + 
Sbjct: 407 NGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIA 466

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           Y T+I GLC+ G   +A K+   M   G +P+E  Y+  +  +    + E  K  H+
Sbjct: 467 YITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIKAAHE 523



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K  + + L  ++L+   +P    F ++++   +   F  V  L H M     + D +++ 
Sbjct: 59  KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 118

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+  C+  +   A  +   + + G+ P  V   ++++G C+     +A  +   M   
Sbjct: 119 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 178

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G +PN   YN++I+G C+  +L  A  +   M  KG     VTYNTLI+GL   GR  +A
Sbjct: 179 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 238

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             L  +M ++ I  +VI +  LI  + KEG ++
Sbjct: 239 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 271



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 71/141 (50%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A+ +F ++ +   +P  V +T V+  + KM        ++ +M + G+  + Y++  +I
Sbjct: 62  DAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTILI 121

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           H +CR   L  A  L  +M+  G+  + VT  +L+ G C   R  EA  L + M   G  
Sbjct: 122 HCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFV 181

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
            +V+ YNT+I G CK   + N
Sbjct: 182 PNVVIYNTVINGLCKNRDLNN 202


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 161/344 (46%), Gaps = 17/344 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGL 153
           S YG    + SCN L   LV+       M+F    +      P   S  + I  LC+ G 
Sbjct: 120 SDYGLKLSVTSCNPLMSGLVKVGEIG-DMEFVYKEMIRRRIEPTLISFNIVINGLCKVGK 178

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----------- 202
           + +A      +K  GV  ++ T+N+ + G  K+ +   ++K    L E            
Sbjct: 179 LNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVT 238

Query: 203 -GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI  FC D  VS   ++  ++   G+ P    +N LI+  C        + L   MV
Sbjct: 239 FNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMV 298

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P+  T+  ++NG CK++   +A  +F+D+ ++G  P+   Y  +I   CK   + 
Sbjct: 299 NSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENME 358

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  ++  M+ KG+ P+  TYN +I G CR  +LE A+ L  EM  K      +TYN LI
Sbjct: 359 DAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILI 418

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             LC  G   +A  L +EM +KG+    +TYNT+I GYCKEG +
Sbjct: 419 DSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNL 462



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 160/339 (47%), Gaps = 15/339 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
             P L+S N++ + L +      A D ++     G S N  +    I   C+ G I + +
Sbjct: 159 IEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMY 218

Query: 159 CAFSKLKEM---GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A + LKEM   G+  +  T+N  + G  K        K++ ++   G          LI
Sbjct: 219 KADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLI 278

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              CN+GKV+E   L  Q++   L P     N L++ FC+ K   +  EL   M  +   
Sbjct: 279 NGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGIT 338

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I+  CK     +A+ ++  +  +G  PD   Y  +I GLC+ G L  AR +
Sbjct: 339 PNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNL 398

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM  K L  +  TYN +I   C    +++A RL  EM  KG   + +TYNT+I G C 
Sbjct: 399 VSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCK 458

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G    A +L  +M + G   +V TYN LI+G+CK+ K+
Sbjct: 459 EGNLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKL 497



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 158/339 (46%), Gaps = 17/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKV--AMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G S ++++ N L D   +     + +K    +  + + G  PN  +  + I   C+   +
Sbjct: 193 GVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFCKDKNV 252

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYL 205
             A   F+++   GV  ++ T+NS + G     + +    L   ++ S           L
Sbjct: 253 SAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNAL 312

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +  FC +  V +  EL   + + G+ P  T +N LI  +C+ +N      L   M+ +  
Sbjct: 313 LNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGV 372

Query: 266 APDNFTYEEVINGLCKSRKRLEAYR-VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            PD  TY  +I GLC+ +  LEA R + +++  +    D + Y  +I  LC  G +  A 
Sbjct: 373 CPDVSTYNCLIAGLCR-KGDLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKAL 431

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM  KGL P++ TYN+MI GYC+  NL  A  L  +M   G      TYN LI G 
Sbjct: 432 RLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANVATYNVLIKGF 491

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C   + ++A  L  EM +KG+  + +TY  + +   ++G
Sbjct: 492 CKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKG 530



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 74/220 (33%), Positives = 119/220 (54%), Gaps = 3/220 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A+  + +   G+E  ++  + GL    T+ N L+S   +    G +  +   M+ R 
Sbjct: 99  LVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIRRR 158

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG--- 321
             P   ++  VINGLCK  K  +A  +  D+K RG   + + Y T+I G CKMG +G   
Sbjct: 159 IEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGKMY 218

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A  +  EM   G+ PNE T+N +I G+C+  N+  A ++  EM  +G     VTYN+LI
Sbjct: 219 KADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLI 278

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GLC +G+ +EA  L ++M    +  ++IT+N L+ G+CK
Sbjct: 279 NGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCK 318



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 12/233 (5%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
             P++++ N L +   + +  K A +  D     G +PN  +  + I   C+   +E+AF
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361

Query: 159 CAFSKLKEMGVFGSIKTWNSALLG-CIKID---RTDLVWK-----LYHDLIESGYLIQAF 209
             +  +   GV   + T+N  + G C K D     +LV +     L  DLI    LI + 
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNILIDSL 421

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           CN G++ +   LL ++   GL P    +N +I  +C++ N      L   M    R  + 
Sbjct: 422 CNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGRLANV 481

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
            TY  +I G CK  K  +A  + N++ E+G +P+ + Y  V   + + G++ D
Sbjct: 482 ATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYEIVTEEMMEKGFVPD 534


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/339 (29%), Positives = 162/339 (47%), Gaps = 20/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ +   + + L    E  A    +  +   G  P+  +    I  LC+  L+ EA
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-------------LYHDLIESGY 204
              FS +K  G+  ++ ++ S + G     R    WK             +  D++    
Sbjct: 251 LDIFSYMKAKGISPTVVSYTSLIQGLCSFSR----WKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC +G V E   +L+ + E G+ P    +N L+  +  +       +L   M+ R 
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG 366

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F+Y  +ING C  ++  EA ++FN++  +G  P+TV YTT+IH  C++G L +AR
Sbjct: 367 CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREAR 426

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ +M   G LP+  TY+ ++ G+C+   L +A RL + M         V Y  LI  +
Sbjct: 427 ELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSM 486

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  G  + A  LF E+   G+  DV  Y T+I G CKEG
Sbjct: 487 CKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEG 525



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 159/335 (47%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  + N+L +     +   +    L      G  P   +    I  LC++G   +A
Sbjct: 121 GLSPNTCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQA 180

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F  +   G    + T+ + + G  K+  T     L   + E G          LI +
Sbjct: 181 LELFDDMVARGCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDS 240

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C D  V+E  ++   +   G+ P   ++  LI   C    +   S +L+ M + N  PD
Sbjct: 241 LCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPD 300

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+  CK    LEA  V   + E G  P+ + Y +++HG      + +ARK++ 
Sbjct: 301 IVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFD 360

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G  P+ ++Y+ +I+GYC +  ++EAK+L  EM+ +G    TV+Y TLI   C  G
Sbjct: 361 VMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLG 420

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  EA  LF++M   G   D+ TY+ L++G+CK+G
Sbjct: 421 KLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +++   L + L +A  F  A++  D   + G  P+  +    I  LC+ G    A
Sbjct: 156 GLQPTIITFTTLINGLCKAGEFAQALELFDDMVARGCQPDVYTYTTIINGLCKMGETAAA 215

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+ E+G    + T+++ +    K    +    ++  +   G          LIQ 
Sbjct: 216 AGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIFSYMKAKGISPTVVSYTSLIQG 275

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+  +  E   +L ++    ++P+   F+ LI  FC++ N      +L TM      P+
Sbjct: 276 LCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPN 335

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G     + +EA ++F+ +  RG  PD   Y+ +I+G C +  + +A++++ 
Sbjct: 336 VITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFN 395

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMIH+GL PN  +Y ++IH +C++  L EA+ L K+M   GY     TY+ L+ G C  G
Sbjct: 396 EMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQG 455

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A+ LF  M    +  +++ Y  LI   CK G +
Sbjct: 456 YLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNL 492



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 15/333 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++  F ++ +  G SP +VS   L   L     +K A   L+   S    P+  +  L I
Sbjct: 250 ALDIFSYMKAK-GISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLI 308

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESG- 203
              C+ G + EA      + EMGV  ++ T+NS + G  ++++  +   KL+  +I  G 
Sbjct: 309 DIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVE-ARKLFDVMITRGC 367

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  +C   ++ E  +L  +++  GL P   ++  LI  FC+        E
Sbjct: 368 KPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARE 427

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M      PD  TY  ++ G CK     +A+R+F  ++     P+ VMYT +I  +C
Sbjct: 428 LFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMC 487

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G L  ARK++ E+   GL P+   Y ++I+G C+   L+EA    ++M + G      
Sbjct: 488 KSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEF 547

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +YN +I G   H     A  L  EM  KG   D
Sbjct: 548 SYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 135/283 (47%), Gaps = 10/283 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-DLVWKLYHDLIESGY-------- 204
           I++A  +F+ +        I  +N  L   +++ +  D V  L   +  +G         
Sbjct: 71  IDDALASFNHMLHRKPLPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI  FC    V  G+ +L +V++ GL P    F  LI+  C+   F +  EL   MVAR
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD +TY  +INGLCK  +   A  +   + E G  PD V Y+T+I  LCK   + +A
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEA 250

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++  M  KG+ P   +Y S+I G C     +EA  +  EM         VT++ LI  
Sbjct: 251 LDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDI 310

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            C  G   EA  + + M + G+  +VITYN+L+ GY  + ++V
Sbjct: 311 FCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVV 353



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 74/324 (22%), Positives = 134/324 (41%), Gaps = 31/324 (9%)

Query: 40  YTEIAKQVCKITRTKPRWEQ-------TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           YT + + +C  +R K             ++ DI +F+    +F +E      NVL +   
Sbjct: 269 YTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSLLIDIFCKE-----GNVLEAQGV 323

Query: 93  FQWLHSHYGFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQ 146
            + + +  G  P++++ N L         +VEAR      D + + G  P+  S  + I 
Sbjct: 324 LKTM-TEMGVEPNVITYNSLMHGYSLQMEVVEARKL---FDVMITRGCKPDVFSYSILIN 379

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL- 205
             C    I+EA   F+++   G+  +  ++ + +    ++ +     +L+ D+  +GYL 
Sbjct: 380 GYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLP 439

Query: 206 --------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                   ++ FC  G + + + L R +    L P    +  LI   C+  N     +L 
Sbjct: 440 DLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSMCKSGNLNHARKLF 499

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             +      PD   Y  +INGLCK     EA   F  ++E G  P+   Y  +I G  + 
Sbjct: 500 SELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQH 559

Query: 318 GWLGDARKMWFEMIHKGLLPNEYT 341
                A ++  EM  KG + +E T
Sbjct: 560 KDESRAVQLIGEMRDKGFVADEGT 583


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 172/358 (48%), Gaps = 13/358 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSP 136
           L +   VL ++  F+   ++ G + D+ +   + D L + +  + A   M+ + + G +P
Sbjct: 140 LCKSGKVLAAMDHFETTTTN-GCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTP 198

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
              +    +  LC+ G +EEA     K+ + G    + T+ S + G  K  R+   +KL+
Sbjct: 199 TIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLF 258

Query: 197 HDLIESGYLIQAFC---------NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
            ++   G ++   C           GK+ +   + + +   G VP+    + +I   C+ 
Sbjct: 259 KEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKA 318

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
              G    +  +M AR  AP+   Y  +I+GLCK+RK   A  +   +K+    PDT+ Y
Sbjct: 319 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 378

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             +I GLCK G +  AR  + EM+  G  P+ YTYN ++ G+C+  N + A  +  +M  
Sbjct: 379 NILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSS 438

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                  VTY TLI+GLC   +  +A   F+ M ++G   D   Y++L+ G CK GK+
Sbjct: 439 SHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSGKL 496



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 108/377 (28%), Positives = 169/377 (44%), Gaps = 23/377 (6%)

Query: 70  FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYG----------FSPDLVSCNVLFDSLVEA 119
            + P F  +      N LL +      H   G          F PD+ + NVL      A
Sbjct: 48  LSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLA 107

Query: 120 R----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           R    AF V  +  +  G +P+  +  L +  LC+SG +  A   F      G    I T
Sbjct: 108 REPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHT 167

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVL 226
           + + +    K  +      L   +  +G          L+   C  G++ E  +LLR+++
Sbjct: 168 YTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIV 227

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           ++G  P+   +  LI    ++K      +L   M  R    D   Y  +I GL ++ K  
Sbjct: 228 DNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIP 287

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  V+  +  +G VPD V  +T+I GLCK G +G A +++  M  +GL PNE  Y+++I
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 347

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           HG C+   ++ A  +  +M        T+TYN LI GLC  G  + A   F+EM + G  
Sbjct: 348 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCK 407

Query: 407 RDVITYNTLIQGYCKEG 423
            DV TYN L+ G+CK G
Sbjct: 408 PDVYTYNILVSGFCKAG 424



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 147/340 (43%), Gaps = 19/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P + + N L + L +    + A+D L      G +P+  +    I  L   G  + +
Sbjct: 195 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL---GKEKRS 251

Query: 158 FCAFSKLKEMGVFGSI------KTWNSALLGCIKIDRTDLVWK------LYHDLIESGYL 205
           F A+   KEM + G +            LL   KI +   V+K         D++    +
Sbjct: 252 FEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 311

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C  G++     + + +   GL P    ++ LI   C+ +      E+L  M     
Sbjct: 312 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 371

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+GLCKS     A   F+++ E G  PD   Y  ++ G CK G    A  
Sbjct: 372 TPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILVSGFCKAGNTDAACG 431

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M      PN  TY ++I G C+   L +A    + M ++G    +  Y++L+ GLC
Sbjct: 432 VFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLC 491

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+ +    LF+EM + G+  +  T   LI   CK  ++
Sbjct: 492 KSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRV 530



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 320 LGDARKMW--FEMIHK---GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           L DA   W  F+ +     G   + +T N+++  + R     EA  L K  L   +    
Sbjct: 35  LKDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDV 94

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKIV 426
            T+N LI G CL    +EA+ +  EM +  G+   + T+N ++ G CK GK++
Sbjct: 95  ETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVL 147


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/281 (31%), Positives = 147/281 (52%), Gaps = 9/281 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           + +A   FS + +   F SI  +N  L   +K+ + D+V  L          +DL     
Sbjct: 66  LNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I  FC   +VS    +L ++L+ G  P+      L++ FC +        L+  MV   
Sbjct: 126 VINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD   Y  +I+ LCK+++  +A+  F +++ +G  P+ V YT +++GLC      DA 
Sbjct: 186 YKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAA 245

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +MI K + PN  TY++++  + +   + EAK L +EM+        VTY++L+ GL
Sbjct: 246 RLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGL 305

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           CLH R DEA  +F+ M  KG   DV++YNTLI G+CK  ++
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRV 346



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 170/335 (50%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+   L +          A+  +D     G+ P+  +    I  LC++  + +A
Sbjct: 150 GYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDA 209

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
           F  F +++  G+  ++ T+ + + G     R     +L  D+I+            L+ A
Sbjct: 210 FDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GKV E  EL  +++   + P+   ++ L++  C        +++   MV++    D
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLAD 329

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK+++  +  ++F ++ +RG V +TV Y T+I G  + G +  A++ + 
Sbjct: 330 VVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFS 389

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+ P+ +TYN ++ G C    LE+A  + ++M  +      VTY T+I G+C  G
Sbjct: 390 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 449

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + +EA+ LF  ++ KG+  D++TY T++ G C +G
Sbjct: 450 KVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  N L  ++V+ + + V +     ++  G   +  +  + I C C    +  A   
Sbjct: 83  PSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSI 142

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G      T  S + G  + +R      L   ++E GY         +I + C 
Sbjct: 143 LGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCK 202

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V++ ++  +++   G+ P    +  L++  C    +   + LL  M+ +   P+  T
Sbjct: 203 TKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVIT 262

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++   K+ K LEA  +F ++      PD V Y+++++GLC    + +A +M+  M+
Sbjct: 263 YSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMV 322

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG L +  +YN++I+G+C+   +E+  +L +EM  +G    TVTYNTLI G    G  D
Sbjct: 323 SKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVD 382

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A   F +M   GI  D+ TYN L+ G C  G++
Sbjct: 383 KAQEFFSQMDFFGISPDIWTYNILLGGLCDNGEL 416



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   DL + N++ +         +A+  L      G+ P+  ++   +   C    + +A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+ E+G    I  +N+ +    K  R +  +  + ++   G          L+  
Sbjct: 175 VSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNG 234

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  + S+   LL  +++  + P    ++ L+  F +        EL   MV  +  PD
Sbjct: 235 LCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPD 294

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLC   +  EA ++F+ +  +G + D V Y T+I+G CK   + D  K++ 
Sbjct: 295 IVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TYN++I G+ +  ++++A+    +M   G      TYN L+ GLC +G
Sbjct: 355 EMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNG 414

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A  +FE+M ++ +  D++TY T+I+G CK GK+
Sbjct: 415 ELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKV 451



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 143/325 (44%), Gaps = 47/325 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCES------ 151
           G+ PD+V+ N + DSL + +    A DF   ++  G  PN  +    +  LC S      
Sbjct: 185 GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDA 244

Query: 152 -----------------------------GLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
                                        G + EA   F ++  M +   I T++S + G
Sbjct: 245 ARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLVNG 304

Query: 183 CIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
               DR D   +++          D++    LI  FC   +V +G +L R++ + GLV  
Sbjct: 305 LCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSN 364

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N LI  F +  +  +  E    M     +PD +TY  ++ GLC + +  +A  +F 
Sbjct: 365 TVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFE 424

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+++R    D V YTTVI G+CK G + +A  ++  +  KGL P+  TY +M+ G C   
Sbjct: 425 DMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKG 484

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYN 378
            L E + L+ +M  +G  +   T +
Sbjct: 485 LLHEVEALYTKMKQEGLMKNDCTLS 509



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 104/215 (48%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K+++  +L   +++    P    FN+L+S   + K +  V  L   M       D +T
Sbjct: 63  DIKLNDAIDLFSDMVKSRPFPSIVDFNRLLSAIVKLKKYDVVISLGKKMEVLGIRNDLYT 122

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  VIN  C   +   A  +   + + GY PD V   ++++G C+   + DA  +  +M+
Sbjct: 123 FNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+   YN++I   C+   + +A    KE+  KG     VTY  L+ GLC   R  
Sbjct: 183 EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWS 242

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +A  L  +M +K I  +VITY+ L+  + K GK++
Sbjct: 243 DAARLLSDMIKKKITPNVITYSALLDAFVKNGKVL 277



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 46/195 (23%), Positives = 88/195 (45%), Gaps = 14/195 (7%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           ++ L+S+  ++N     FF     Q  +V  +  FF  +   +G SPD+ + N+L   L 
Sbjct: 358 QRGLVSNTVTYNTLIQGFF-----QAGDVDKAQEFFSQMD-FFGISPDIWTYNILLGGLC 411

Query: 118 EARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +    + A+   +          +  Y   I+ +C++G +EEA+  F  L   G+   I 
Sbjct: 412 DNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIV 471

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC--NDGKVSEGYELLRQVLEDGLVP 232
           T+ + + G         V  LY  + + G L++  C  +DG ++   EL++++L  G  P
Sbjct: 472 TYTTMMSGLCTKGLLHEVEALYTKMKQEG-LMKNDCTLSDGDITLSAELIKKMLSCGYAP 530

Query: 233 ENTAFNKLISRFCEK 247
             +    + S  C+K
Sbjct: 531 --SLLKDIKSGVCKK 543


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 147/281 (52%), Gaps = 9/281 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           + +A   F ++ +   F SI  +N  L   +K+ + D+V  L          +DL     
Sbjct: 66  LHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYTFNI 125

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I  FC   +VS    +L ++L+ G  P+      L++ FC +        L+  MV   
Sbjct: 126 VINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIG 185

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD   Y  +I+ LCK+R+  +A   F ++  +G  P+ V YT +++GLC  G   DA 
Sbjct: 186 YRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAA 245

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +MI + + PN  TY++++  + +   + EAK + +EM+        VTY++LI GL
Sbjct: 246 RLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPDIVTYSSLINGL 305

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           CLH R DEA  +F+ M  KG F DV++YNTLI G+CK  ++
Sbjct: 306 CLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRV 346



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   DL + N++ +         +A+  L      G+ P+  ++   +   C    + +A
Sbjct: 115 GIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDA 174

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+ E+G    I  +N+ +    K  R +     + ++   G          L+  
Sbjct: 175 VSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNG 234

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ ++   LLR +++  + P    ++ L+  F +        E+   MV  +  PD
Sbjct: 235 LCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMSIDPD 294

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGLC   +  EA ++F+ +  +G  PD V Y T+I+G CK   + D  K++ 
Sbjct: 295 IVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFR 354

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +GL+ N  TYN++I G+ ++ ++++A+    +M   G      TYN L+ GLC +G
Sbjct: 355 KMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYNILLGGLCDNG 414

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A  +FE+M +  +  D++TY T+IQG CK GK+
Sbjct: 415 LLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKV 451



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 164/326 (50%), Gaps = 29/326 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+V+ N + DSL + R    A+DF   +   G  PN  +    +  LC SG     
Sbjct: 185 GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSG----- 239

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                             WN A     ++ R  +  K+  ++I    L+ AF  +GKV E
Sbjct: 240 -----------------RWNDA----ARLLRDMIKRKITPNVITYSALLDAFVKNGKVLE 278

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E+  +++   + P+   ++ LI+  C        +++   MV++   PD  +Y  +IN
Sbjct: 279 AKEIFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLIN 338

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK+++  +  ++F  + +RG V +TV Y T+I G  ++G +  A++ + +M   G+ P
Sbjct: 339 GFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSP 398

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +TYN ++ G C    LE+A  + ++M         VTY T+I G+C  G+ ++A+ LF
Sbjct: 399 DIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLF 458

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
             ++ KG+  D++TY T++ G C +G
Sbjct: 459 CSLSLKGLKPDIVTYTTMMSGLCTKG 484



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 106/215 (49%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K+ +   L R++++    P    FN+L+S   + K +  V  L   M       D +T
Sbjct: 63  DIKLHDAINLFREMVKTRPFPSIVDFNRLLSAIVKMKKYDVVISLGKKMEVLGIRNDLYT 122

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  VIN  C   +   A  V   + + GY PD V   ++++G C+   + DA  +  +M+
Sbjct: 123 FNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMV 182

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+   YN++I   C+   + +A    KE+  KG     VTY  L+ GLC  GR +
Sbjct: 183 EIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWN 242

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +A  L  +M ++ I  +VITY+ L+  + K GK++
Sbjct: 243 DAARLLRDMIKRKITPNVITYSALLDAFVKNGKVL 277


>gi|18415314|ref|NP_567587.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334186696|ref|NP_001190771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|15810161|gb|AAL07224.1| unknown protein [Arabidopsis thaliana]
 gi|332658782|gb|AEE84182.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332658783|gb|AEE84183.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 179/383 (46%), Gaps = 47/383 (12%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPN 139
           +++   L++  F  L ++ G  P   +CN+L  SLV A  F+   +  D    G SP+  
Sbjct: 203 KRDGCYLALDVFPVL-ANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVY 261

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                I   C+ G +EEA   FSK++E GV  ++ T+N+ + G     R D  +     +
Sbjct: 262 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 321

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +E G          L++      ++ + Y +L+++ + G  P    +N LI  F E  + 
Sbjct: 322 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 381

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY---------- 300
            +  E+   MV++  +  + TY  +I G CK+ +   A R+  ++   G+          
Sbjct: 382 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 441

Query: 301 -------------------------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
                                     P   + TT+I GLCK G    A ++WF+ ++KG 
Sbjct: 442 ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF 501

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           + +  T N+++HG C    L+EA R+ KE+L +G     V+YNTLI+G C   + DEA+ 
Sbjct: 502 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 561

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
             +EM ++G+  D  TY+ LI G
Sbjct: 562 FLDEMVKRGLKPDNYTYSILICG 584



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 165/375 (44%), Gaps = 51/375 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD------------------------------ 130
           GF P+++  N L DS +EA +   A++  D                              
Sbjct: 360 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNA 419

Query: 131 --------STGFSPNPNSLELYIQCLCESGLIEEA--FCAFSKLKEMGVFGSIKTWNSAL 180
                   S GF+ N  S    I  LC   + + A  F     L+ M   G + T  + +
Sbjct: 420 ERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT--TLI 477

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K  +     +L+   +  G+         L+   C  GK+ E + + +++L  G V
Sbjct: 478 SGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCV 537

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            +  ++N LIS  C KK        L  MV R   PDN+TY  +I GL    K  EA + 
Sbjct: 538 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 597

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           ++D K  G +PD   Y+ +I G CK     + ++ + EM+ K + PN   YN +I  YCR
Sbjct: 598 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 657

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L  A  L ++M  KG    + TY +LI G+ +  R +EA  LFEEM  +G+  +V  
Sbjct: 658 SGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH 717

Query: 412 YNTLIQGYCKEGKIV 426
           Y  LI GY K G++V
Sbjct: 718 YTALIDGYGKLGQMV 732



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 10/317 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           ++A ++   FL+  GF  +  +    +  LCE+G ++EAF    ++   G      ++N+
Sbjct: 487 SKALELWFQFLNK-GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNT 545

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + GC    + D  +    ++++ G          LI    N  KV E  +       +G
Sbjct: 546 LISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNG 605

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           ++P+   ++ +I   C+ +      E    M+++N  P+   Y  +I   C+S +   A 
Sbjct: 606 MLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 665

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +  D+K +G  P++  YT++I G+  +  + +A+ ++ EM  +GL PN + Y ++I GY
Sbjct: 666 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 725

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            ++  + + + L +EM  K      +TY  +I G    G   EA  L  EM +KGI  D 
Sbjct: 726 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDS 785

Query: 410 ITYNTLIQGYCKEGKIV 426
           ITY   I GY K+G ++
Sbjct: 786 ITYKEFIYGYLKQGGVL 802



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 162/345 (46%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +++ F  +    G +P++V+ N + D L     +  A  F +     G  P   +  + +
Sbjct: 279 AVKLFSKME-EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILV 337

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-------IDRTDLVWKLYHD 198
           + L  +  I +A+    ++ + G   ++  +N+ +   I+       I+  DL+      
Sbjct: 338 KGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLS 397

Query: 199 LIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           L  S Y  LI+ +C +G+      LL+++L  G      +F  +I   C    F      
Sbjct: 398 LTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRF 457

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+ RN +P       +I+GLCK  K  +A  ++     +G+V DT     ++HGLC+
Sbjct: 458 VGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCE 517

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L +A ++  E++ +G + +  +YN++I G C    L+EA     EM+ +G      T
Sbjct: 518 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 577

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y+ LI GL    + +EA   +++  + G+  DV TY+ +I G CK
Sbjct: 578 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 622



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 146/339 (43%), Gaps = 19/339 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           +FQ+L+   GF  D  + N L   L EA     AF++  + L   G   +  S    I  
Sbjct: 493 WFQFLNK--GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL-GRGCVMDRVSYNTLISG 549

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-- 205
            C    ++EAF    ++ + G+     T++  + G   +++ +   + + D   +G L  
Sbjct: 550 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPD 609

Query: 206 -------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                  I   C   +  EG E   +++   + P    +N LI  +C         EL  
Sbjct: 610 VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 669

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +  +P++ TY  +I G+    +  EA  +F +++  G  P+   YT +I G  K+G
Sbjct: 670 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 729

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +     +  EM  K + PN+ TY  MI GY R  N+ EA RL  EM +KG    ++TY 
Sbjct: 730 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 789

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             I G    G   EA+   +E     I      +N LIQ
Sbjct: 790 EFIYGYLKQGGVLEAFKGSDEENYAAIIEG---WNKLIQ 825



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 4/229 (1%)

Query: 202 SGYLIQAFCNDGKVSEGY---ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           S  LI+ +C   K    Y   ++   +   G+ P  T  N L++       F +  E   
Sbjct: 191 SDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD 250

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +V +  +PD + +   IN  CK  K  EA ++F+ ++E G  P+ V + TVI GL   G
Sbjct: 251 -VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCG 309

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A     +M+ +G+ P   TY+ ++ G  R   + +A  + KEM  KG+    + YN
Sbjct: 310 RYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYN 369

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LI      G  ++A  + + M  KG+     TYNTLI+GYCK G+  N
Sbjct: 370 NLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADN 418


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 160/328 (48%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +V+   L +   +   F+ A+  +DS    GF PN       I  LC++  +  A
Sbjct: 669 GFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNA 728

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F  +++ G+     T+N+                          LI    N G+ ++
Sbjct: 729 LEVFYCMEKKGIRADAVTYNT--------------------------LISGLSNSGRWTD 762

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LLR +++  + P    F  LI  F ++ N      L   M+ R+  P+ FTY  +IN
Sbjct: 763 AARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLIN 822

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C      +A  +F+ +  +G  PD V Y T+I G CK   + D  K++ EM ++GL+ 
Sbjct: 823 GFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVG 882

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +TYN++IHGYC+   L  A+++   M+D G     VTYN L+  LC +G+ ++A  + 
Sbjct: 883 DAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMV 942

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E++ +  +  D+ITYN +IQG C+  K+
Sbjct: 943 EDLQKSEMDVDIITYNIIIQGLCRTDKL 970



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 156/337 (46%), Gaps = 31/337 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           FF+ +HS     P +V    L  +    R ++  + F   ++  G S +  S  + I C 
Sbjct: 59  FFEMVHSQP--LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTILIHCF 116

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C    +  A     K+ ++G   SI T+                          G L+  
Sbjct: 117 CRCSRLSFALSVLGKMMKLGYEPSIVTF--------------------------GSLLHG 150

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   ++ + + L+  +++ G  P    +N LI   C+        ELL+ M  +    D
Sbjct: 151 FCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGAD 210

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ GLC S +  +A R+  D+ +R   PD V +T +I    K G L +A++++ 
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI   + PN  TYNS+I+G C    L +AK+    M  KG     VTYNTLI+G C   
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             DE   LF+ M+ +G   D+ TYNTLI GYC+ GK+
Sbjct: 331 MVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKL 367



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 142/276 (51%), Gaps = 9/276 (3%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGYL 205
           E+AF  F ++       SI  +   L     + R + V         + + HDL     L
Sbjct: 53  EDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIYFSQKMELYGISHDLYSFTIL 112

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC   ++S    +L ++++ G  P    F  L+  FC     G    L+  MV    
Sbjct: 113 IHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKSGY 172

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+   Y  +I+GLCK+ +   A  + N+++++G   D V Y T++ GLC  G   DA +
Sbjct: 173 EPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAAR 232

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           M  +M+ + + P+  T+ ++I  + +  NL+EA+ L+KEM+        VTYN++I GLC
Sbjct: 233 MLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLC 292

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +HGR  +A   F+ MA KG F +V+TYNTLI G+CK
Sbjct: 293 MHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCK 328



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 142/297 (47%), Gaps = 26/297 (8%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           +++ G S +  S  + I C C    +  A     K+ ++G   SI T             
Sbjct: 630 MENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTL------------ 677

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
                         G L+  FC   +  E   L+  +   G VP    +N +I+  C+ +
Sbjct: 678 --------------GSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           +     E+ + M  +    D  TY  +I+GL  S +  +A R+  D+ +R   P+ + +T
Sbjct: 724 DLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFT 783

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            +I    K G L +AR ++ EMI + ++PN +TYNS+I+G+C    L +AK +   M+ K
Sbjct: 784 ALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSK 843

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G     VTYNTLI G C   R ++   LF EM  +G+  D  TYNTLI GYC+ GK+
Sbjct: 844 GCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGKL 900



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 144/280 (51%), Gaps = 9/280 (3%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           ++AF  F ++ +     SI  +   L    K+++ D+V  LYH         DL     L
Sbjct: 586 DDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFTIL 645

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC   ++S    LL ++++ G  P       L++ FC+   F     L+ +M     
Sbjct: 646 IHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGF 705

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+   Y  VINGLCK+R    A  VF  ++++G   D V Y T+I GL   G   DA +
Sbjct: 706 VPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAAR 765

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M+ + + PN   + ++I  + +  NL EA+ L+KEM+ +       TYN+LI G C
Sbjct: 766 LLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFC 825

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +HG   +A ++F+ M  KG F DV+TYNTLI G+CK  ++
Sbjct: 826 IHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRV 865



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 152/336 (45%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P +V+   L            AF + +  + S G+ PN       I  LC++G +  
Sbjct: 136 GYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNVVVYNTLIDGLCKNGELNI 194

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++++ G+   + T+N+ L G     R     ++  D+++            LI 
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F   G + E  EL +++++  + P N  +N +I+  C         +    M ++   P
Sbjct: 255 VFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFP 314

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+G CK R   E  ++F  +   G+  D   Y T+IHG C++G L  A  ++
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ + + P+  T+  ++HG C    +E A     +M +       V YN +I GLC  
Sbjct: 375 CWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKA 434

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            + ++A+ LF  +  +G+  D  TY  +I G CK G
Sbjct: 435 DKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNG 470



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 111/230 (48%), Gaps = 5/230 (2%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y + + +G+L     +  +  + + L  +++    +P    F +L++     + +  V  
Sbjct: 38  YREKLRTGFL-----HSIRFEDAFALFFEMVHSQPLPSIVDFTRLLTATANLRRYETVIY 92

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
               M     + D +++  +I+  C+  +   A  V   + + GY P  V + +++HG C
Sbjct: 93  FSQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFC 152

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            +  +GDA  +   M+  G  PN   YN++I G C+   L  A  L  EM  KG G   V
Sbjct: 153 LVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVV 212

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TYNTL+ GLC  GR  +A  +  +M ++ I  DV+T+  LI  + K+G +
Sbjct: 213 TYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNL 262



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 169/393 (43%), Gaps = 56/393 (14%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQ 146
           ++ FQ + S  GF+ D+ + N L     +    +VA+D   ++ S   +P+  +  + + 
Sbjct: 336 MKLFQRM-SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLH 394

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC +G IE A   F  ++E   +  I  +N  + G  K D+ +  W+L+  L   G   
Sbjct: 395 GLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKP 454

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLV----------PENTAFNKLISRFCEK 247
                  +I   C +G   E  EL+R++ E+G++           E+++ NK IS    +
Sbjct: 455 DARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNAEDDHLEEHSSSNKEISLSLRE 514

Query: 248 ------------------------KNFGRVSELL-------HTMVARN--RAPDNFTYEE 274
                                   K F R   LL        T ++R+   A  +  Y E
Sbjct: 515 IWERSKSNPFWMQRLIPIAFSSSVKGFVRRHYLLLERGNNPETSLSRSFSGASHHHHYRE 574

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
            +       K  +A+ +F ++ +   +P  V +T V+  + KM        ++ +M + G
Sbjct: 575 RLRNELHCIKFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLG 634

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +  + Y++  +IH +CR   L  A  L  +M+  G+  + VT  +L+ G C   R  EA 
Sbjct: 635 ISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAV 694

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L + M   G   +V+ YNT+I G CK   + N
Sbjct: 695 SLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNN 727



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 9/237 (3%)

Query: 136  PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
            PN  +    I   C  G + +A   F  +   G F  + T+N+ + G  K  R +   KL
Sbjct: 812  PNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNTLITGFCKSKRVEDGMKL 871

Query: 196  YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            + ++   G          LI  +C  GK++   ++  ++++ G+ P+   +N L+   C 
Sbjct: 872  FCEMTYQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCN 931

Query: 247  KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                 +   ++  +       D  TY  +I GLC++ K  EA+ +F  L  +G  PD + 
Sbjct: 932  NGKIEKALVMVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIA 991

Query: 307  YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            Y T+I GLC+ G   +A K+   M   G +P+E  Y+  +  +    + E  K  H+
Sbjct: 992  YITMISGLCRKGLQREADKLCRRMKEDGFMPSERIYDETLRDHYTSLSAELIKAAHE 1048



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 103/213 (48%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K  + + L  ++L+   +P    F ++++   +   F  V  L H M     + D +++ 
Sbjct: 584 KFDDAFSLFCEMLQSRPIPSIVDFTRVLTVIAKMNKFDIVIYLYHKMENLGISHDLYSFT 643

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+  C+  +   A  +   + + G+ P  V   ++++G C+     +A  +   M   
Sbjct: 644 ILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGF 703

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G +PN   YN++I+G C+  +L  A  +   M  KG     VTYNTLI+GL   GR  +A
Sbjct: 704 GFVPNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDA 763

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             L  +M ++ I  +VI +  LI  + KEG ++
Sbjct: 764 ARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLL 796


>gi|300681581|emb|CBI75525.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 100/333 (30%), Positives = 160/333 (48%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+ S ++L D L +          L      G +PN  S    +  LC +G +E A
Sbjct: 313 GFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELA 372

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F  F +LK+ G       ++  L GC +    ++ + L++D++   +         LI A
Sbjct: 373 FELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYA 432

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ E  E+   ++ DG+ P       L+  F  +   G     L  +      P+
Sbjct: 433 YCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPN 492

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGLCK  K  + + +F D+ +RGYVPDTV+Y+ +I G  K   L +A ++++
Sbjct: 493 LCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYY 552

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G  PN +TY S+I+G C  D L E   L K M+ +G     + Y +LIA  C   
Sbjct: 553 KMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRS 612

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
               A  +F EM  +G+  D   Y  LI G+ K
Sbjct: 613 NMKAALEIFREMETEGLSADSFVYTCLIGGFSK 645



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 158/334 (47%), Gaps = 14/334 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESG--LIEEAFC 159
           +L  CN L   LVE           D    +G SPN  S  + +          +EEA  
Sbjct: 175 ELQVCNFLLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQE 234

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
             S+++  GV  +  T+ + L G  +  +    W     L + GY         +I  FC
Sbjct: 235 LLSEMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFC 294

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           +DG+V +  E+   + + G VP+  +++ L+   C++ +      +L  M      P+  
Sbjct: 295 HDGQVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLV 354

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +Y  +++GLC++ +   A+ +F  LK++G+  D ++Y+ V+HG C+   L     +W +M
Sbjct: 355 SYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDM 414

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +H   +P+ Y Y+S+I+ YCR   L+EA  + + M+  G     VT   L+ G    G  
Sbjct: 415 VHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLI 474

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            EA+   +++ Q G+  ++ TY  +I G CK  K
Sbjct: 475 GEAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNK 508



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/308 (25%), Positives = 148/308 (48%), Gaps = 9/308 (2%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   GF P+ +S  + +  LC+ G +   +    ++   G+  ++ +++S L G  + 
Sbjct: 307 DGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRA 366

Query: 187 DRTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            R +L ++L+         HD I    ++   C    +   Y+L   ++    VP+   +
Sbjct: 367 GRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNY 426

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           + LI  +C  +      E+   M+     P+  T   +++G        EA+   + +++
Sbjct: 427 SSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQ 486

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G VP+   Y  +I+GLCK+    D   ++ +MI +G +P+   Y+ +I G+ +  +L+E
Sbjct: 487 FGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQE 546

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A RL+ +M+D+G      TY +LI GLC   +  E   LF+ M  +G+  D I Y +LI 
Sbjct: 547 AFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIA 606

Query: 418 GYCKEGKI 425
            YCK   +
Sbjct: 607 CYCKRSNM 614



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 143/313 (45%), Gaps = 29/313 (9%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H+ F PD  + + L  +    R  K A++  +     G  PN  +  + +      GLI 
Sbjct: 416 HHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIG 475

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EAF    K+++ GV  ++ T+   + G  K+++ + VW ++ D+I+ GY           
Sbjct: 476 EAFLFLDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGY----------- 524

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                          VP+   ++ +I  F +  +      L + MV     P+ FTY  +
Sbjct: 525 ---------------VPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSL 569

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           INGLC   K  E   +F  +   G  PD ++YT++I   CK   +  A +++ EM  +GL
Sbjct: 570 INGLCHDDKLPEVMTLFKHMIGEGLTPDRILYTSLIACYCKRSNMKAALEIFREMETEGL 629

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             + + Y  +I G+ ++  ++ A+   +EM++KG   T VTY  LI G    G   +A  
Sbjct: 630 SADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIIGYFKIGDEKKAMV 689

Query: 396 LFEEMAQKGIFRD 408
           ++  M Q GI  D
Sbjct: 690 MYNSMLQAGIAPD 702



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/299 (25%), Positives = 139/299 (46%), Gaps = 13/299 (4%)

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
           P      I+   E  + E+A   + + K++GV   ++  N  L G ++ ++   V  L+ 
Sbjct: 143 PQVYATVIRVFVELSMFEDALVTYVEAKKVGV--ELQVCNFLLKGLVEGNQIMYVRSLFD 200

Query: 198 DLIESG---------YLIQAFCNDGKV--SEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           D+  SG          L+  + +  K+   E  ELL ++  +G+ P    +   +   C 
Sbjct: 201 DMKISGPSPNIYSYSVLMSMYTHGAKLCLEEAQELLSEMEVEGVRPNAATYGTYLYGLCR 260

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            K        L  +  R    +++ +  VI+G C   +  +A  VF+ +K+ G+VPD   
Sbjct: 261 AKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKAVEVFDGMKKCGFVPDVHS 320

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+ ++ GLCK G +     M  EM   G+ PN  +Y+S++HG CR   +E A  L K + 
Sbjct: 321 YSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLK 380

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D+G+    + Y+ ++ G C H   +  Y L+ +M       D   Y++LI  YC+  ++
Sbjct: 381 DQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQL 439



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 152/339 (44%), Gaps = 16/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +       L  A+  K A +FL      G+  N       I   C  G + +A
Sbjct: 243 GVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDGQVHKA 302

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----------DLIESGYLI 206
              F  +K+ G    + +++  + G  K  + D++   Y            +L+    L+
Sbjct: 303 VEVFDGMKKCGFVPDVHSYSILVDGLCK--QGDVLTGYYMLVEMARNGITPNLVSYSSLL 360

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G+V   +EL +++ + G   ++  ++ ++   C+  +     +L + MV  N  
Sbjct: 361 HGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFV 420

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD + Y  +I   C+ R+  EA  VF  +   G  P+ V  T ++HG    G +G+A   
Sbjct: 421 PDAYNYSSLIYAYCRHRQLKEALEVFELMICDGICPNVVTCTILVHGFSNEGLIGEAFLF 480

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             ++   G++PN  TY  +I+G C+++   +   +  +M+ +GY   TV Y+ +I G   
Sbjct: 481 LDKVRQFGVVPNLCTYRVIINGLCKVNKPNDVWGIFADMIKRGYVPDTVLYSIIIDGFVK 540

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                EA+ L+ +M  +G   ++ TY +LI G C + K+
Sbjct: 541 ALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKL 579



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 84/159 (52%), Gaps = 10/159 (6%)

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI----HG--LCKMGWLGDARKMWF 328
           ++ GL +  + +    +F+D+K  G  P+   Y+ ++    HG  LC    L +A+++  
Sbjct: 182 LLKGLVEGNQIMYVRSLFDDMKISGPSPNIYSYSVLMSMYTHGAKLC----LEEAQELLS 237

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G+ PN  TY + ++G CR   ++ A    + +  +GY   +  +N +I G C  G
Sbjct: 238 EMEVEGVRPNAATYGTYLYGLCRAKQVKSAWNFLQMLCQRGYPCNSYCFNAVIHGFCHDG 297

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +  +A  +F+ M + G   DV +Y+ L+ G CK+G ++ 
Sbjct: 298 QVHKAVEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLT 336


>gi|3080374|emb|CAA18631.1| putative protein [Arabidopsis thaliana]
 gi|7268739|emb|CAB78946.1| putative protein [Arabidopsis thaliana]
          Length = 814

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 179/383 (46%), Gaps = 47/383 (12%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPN 139
           +++   L++  F  L ++ G  P   +CN+L  SLV A  F+   +  D    G SP+  
Sbjct: 192 KRDGCYLALDVFPVL-ANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVY 250

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                I   C+ G +EEA   FSK++E GV  ++ T+N+ + G     R D  +     +
Sbjct: 251 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 310

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +E G          L++      ++ + Y +L+++ + G  P    +N LI  F E  + 
Sbjct: 311 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 370

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY---------- 300
            +  E+   MV++  +  + TY  +I G CK+ +   A R+  ++   G+          
Sbjct: 371 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 430

Query: 301 -------------------------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
                                     P   + TT+I GLCK G    A ++WF+ ++KG 
Sbjct: 431 ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF 490

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           + +  T N+++HG C    L+EA R+ KE+L +G     V+YNTLI+G C   + DEA+ 
Sbjct: 491 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 550

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
             +EM ++G+  D  TY+ LI G
Sbjct: 551 FLDEMVKRGLKPDNYTYSILICG 573



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 165/375 (44%), Gaps = 51/375 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD------------------------------ 130
           GF P+++  N L DS +EA +   A++  D                              
Sbjct: 349 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNA 408

Query: 131 --------STGFSPNPNSLELYIQCLCESGLIEEA--FCAFSKLKEMGVFGSIKTWNSAL 180
                   S GF+ N  S    I  LC   + + A  F     L+ M   G + T  + +
Sbjct: 409 ERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT--TLI 466

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K  +     +L+   +  G+         L+   C  GK+ E + + +++L  G V
Sbjct: 467 SGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCV 526

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            +  ++N LIS  C KK        L  MV R   PDN+TY  +I GL    K  EA + 
Sbjct: 527 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 586

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           ++D K  G +PD   Y+ +I G CK     + ++ + EM+ K + PN   YN +I  YCR
Sbjct: 587 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 646

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L  A  L ++M  KG    + TY +LI G+ +  R +EA  LFEEM  +G+  +V  
Sbjct: 647 SGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH 706

Query: 412 YNTLIQGYCKEGKIV 426
           Y  LI GY K G++V
Sbjct: 707 YTALIDGYGKLGQMV 721



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 10/317 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           ++A ++   FL+  GF  +  +    +  LCE+G ++EAF    ++   G      ++N+
Sbjct: 476 SKALELWFQFLNK-GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNT 534

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + GC    + D  +    ++++ G          LI    N  KV E  +       +G
Sbjct: 535 LISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNG 594

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           ++P+   ++ +I   C+ +      E    M+++N  P+   Y  +I   C+S +   A 
Sbjct: 595 MLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 654

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +  D+K +G  P++  YT++I G+  +  + +A+ ++ EM  +GL PN + Y ++I GY
Sbjct: 655 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 714

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            ++  + + + L +EM  K      +TY  +I G    G   EA  L  EM +KGI  D 
Sbjct: 715 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDS 774

Query: 410 ITYNTLIQGYCKEGKIV 426
           ITY   I GY K+G ++
Sbjct: 775 ITYKEFIYGYLKQGGVL 791



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 162/345 (46%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +++ F  +    G +P++V+ N + D L     +  A  F +     G  P   +  + +
Sbjct: 268 AVKLFSKME-EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILV 326

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-------IDRTDLVWKLYHD 198
           + L  +  I +A+    ++ + G   ++  +N+ +   I+       I+  DL+      
Sbjct: 327 KGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLS 386

Query: 199 LIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           L  S Y  LI+ +C +G+      LL+++L  G      +F  +I   C    F      
Sbjct: 387 LTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRF 446

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+ RN +P       +I+GLCK  K  +A  ++     +G+V DT     ++HGLC+
Sbjct: 447 VGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCE 506

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L +A ++  E++ +G + +  +YN++I G C    L+EA     EM+ +G      T
Sbjct: 507 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 566

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y+ LI GL    + +EA   +++  + G+  DV TY+ +I G CK
Sbjct: 567 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 611



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 146/339 (43%), Gaps = 19/339 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           +FQ+L+   GF  D  + N L   L EA     AF++  + L   G   +  S    I  
Sbjct: 482 WFQFLNK--GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL-GRGCVMDRVSYNTLISG 538

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-- 205
            C    ++EAF    ++ + G+     T++  + G   +++ +   + + D   +G L  
Sbjct: 539 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPD 598

Query: 206 -------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                  I   C   +  EG E   +++   + P    +N LI  +C         EL  
Sbjct: 599 VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 658

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +  +P++ TY  +I G+    +  EA  +F +++  G  P+   YT +I G  K+G
Sbjct: 659 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 718

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +     +  EM  K + PN+ TY  MI GY R  N+ EA RL  EM +KG    ++TY 
Sbjct: 719 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 778

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             I G    G   EA+   +E     I      +N LIQ
Sbjct: 779 EFIYGYLKQGGVLEAFKGSDEENYAAIIEG---WNKLIQ 814



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 4/229 (1%)

Query: 202 SGYLIQAFCNDGKVSEGY---ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           S  LI+ +C   K    Y   ++   +   G+ P  T  N L++       F +  E   
Sbjct: 180 SDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD 239

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +V +  +PD + +   IN  CK  K  EA ++F+ ++E G  P+ V + TVI GL   G
Sbjct: 240 -VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCG 298

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A     +M+ +G+ P   TY+ ++ G  R   + +A  + KEM  KG+    + YN
Sbjct: 299 RYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYN 358

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LI      G  ++A  + + M  KG+     TYNTLI+GYCK G+  N
Sbjct: 359 NLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADN 407


>gi|223635621|sp|Q940A6.2|PP325_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19440, chloroplastic; Flags: Precursor
          Length = 838

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 179/383 (46%), Gaps = 47/383 (12%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPN 139
           +++   L++  F  L ++ G  P   +CN+L  SLV A  F+   +  D    G SP+  
Sbjct: 216 KRDGCYLALDVFPVL-ANKGMFPSKTTCNILLTSLVRANEFQKCCEAFDVVCKGVSPDVY 274

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                I   C+ G +EEA   FSK++E GV  ++ T+N+ + G     R D  +     +
Sbjct: 275 LFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKM 334

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +E G          L++      ++ + Y +L+++ + G  P    +N LI  F E  + 
Sbjct: 335 VERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSL 394

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY---------- 300
            +  E+   MV++  +  + TY  +I G CK+ +   A R+  ++   G+          
Sbjct: 395 NKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSV 454

Query: 301 -------------------------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
                                     P   + TT+I GLCK G    A ++WF+ ++KG 
Sbjct: 455 ICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGF 514

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           + +  T N+++HG C    L+EA R+ KE+L +G     V+YNTLI+G C   + DEA+ 
Sbjct: 515 VVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFM 574

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
             +EM ++G+  D  TY+ LI G
Sbjct: 575 FLDEMVKRGLKPDNYTYSILICG 597



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 165/375 (44%), Gaps = 51/375 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD------------------------------ 130
           GF P+++  N L DS +EA +   A++  D                              
Sbjct: 373 GFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADNA 432

Query: 131 --------STGFSPNPNSLELYIQCLCESGLIEEA--FCAFSKLKEMGVFGSIKTWNSAL 180
                   S GF+ N  S    I  LC   + + A  F     L+ M   G + T  + +
Sbjct: 433 ERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRFVGEMLLRNMSPGGGLLT--TLI 490

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K  +     +L+   +  G+         L+   C  GK+ E + + +++L  G V
Sbjct: 491 SGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCV 550

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            +  ++N LIS  C KK        L  MV R   PDN+TY  +I GL    K  EA + 
Sbjct: 551 MDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQF 610

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           ++D K  G +PD   Y+ +I G CK     + ++ + EM+ K + PN   YN +I  YCR
Sbjct: 611 WDDCKRNGMLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCR 670

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L  A  L ++M  KG    + TY +LI G+ +  R +EA  LFEEM  +G+  +V  
Sbjct: 671 SGRLSMALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFH 730

Query: 412 YNTLIQGYCKEGKIV 426
           Y  LI GY K G++V
Sbjct: 731 YTALIDGYGKLGQMV 745



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 152/317 (47%), Gaps = 10/317 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           ++A ++   FL+  GF  +  +    +  LCE+G ++EAF    ++   G      ++N+
Sbjct: 500 SKALELWFQFLNK-GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEILGRGCVMDRVSYNT 558

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + GC    + D  +    ++++ G          LI    N  KV E  +       +G
Sbjct: 559 LISGCCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNG 618

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           ++P+   ++ +I   C+ +      E    M+++N  P+   Y  +I   C+S +   A 
Sbjct: 619 MLPDVYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMAL 678

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +  D+K +G  P++  YT++I G+  +  + +A+ ++ EM  +GL PN + Y ++I GY
Sbjct: 679 ELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGY 738

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            ++  + + + L +EM  K      +TY  +I G    G   EA  L  EM +KGI  D 
Sbjct: 739 GKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDS 798

Query: 410 ITYNTLIQGYCKEGKIV 426
           ITY   I GY K+G ++
Sbjct: 799 ITYKEFIYGYLKQGGVL 815



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 162/345 (46%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +++ F  +    G +P++V+ N + D L     +  A  F +     G  P   +  + +
Sbjct: 292 AVKLFSKME-EAGVAPNVVTFNTVIDGLGMCGRYDEAFMFKEKMVERGMEPTLITYSILV 350

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-------IDRTDLVWKLYHD 198
           + L  +  I +A+    ++ + G   ++  +N+ +   I+       I+  DL+      
Sbjct: 351 KGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYNNLIDSFIEAGSLNKAIEIKDLMVSKGLS 410

Query: 199 LIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           L  S Y  LI+ +C +G+      LL+++L  G      +F  +I   C    F      
Sbjct: 411 LTSSTYNTLIKGYCKNGQADNAERLLKEMLSIGFNVNQGSFTSVICLLCSHLMFDSALRF 470

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+ RN +P       +I+GLCK  K  +A  ++     +G+V DT     ++HGLC+
Sbjct: 471 VGEMLLRNMSPGGGLLTTLISGLCKHGKHSKALELWFQFLNKGFVVDTRTSNALLHGLCE 530

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L +A ++  E++ +G + +  +YN++I G C    L+EA     EM+ +G      T
Sbjct: 531 AGKLDEAFRIQKEILGRGCVMDRVSYNTLISGCCGKKKLDEAFMFLDEMVKRGLKPDNYT 590

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y+ LI GL    + +EA   +++  + G+  DV TY+ +I G CK
Sbjct: 591 YSILICGLFNMNKVEEAIQFWDDCKRNGMLPDVYTYSVMIDGCCK 635



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 146/339 (43%), Gaps = 19/339 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           +FQ+L+   GF  D  + N L   L EA     AF++  + L   G   +  S    I  
Sbjct: 506 WFQFLNK--GFVVDTRTSNALLHGLCEAGKLDEAFRIQKEIL-GRGCVMDRVSYNTLISG 562

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-- 205
            C    ++EAF    ++ + G+     T++  + G   +++ +   + + D   +G L  
Sbjct: 563 CCGKKKLDEAFMFLDEMVKRGLKPDNYTYSILICGLFNMNKVEEAIQFWDDCKRNGMLPD 622

Query: 206 -------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                  I   C   +  EG E   +++   + P    +N LI  +C         EL  
Sbjct: 623 VYTYSVMIDGCCKAERTEEGQEFFDEMMSKNVQPNTVVYNHLIRAYCRSGRLSMALELRE 682

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +  +P++ TY  +I G+    +  EA  +F +++  G  P+   YT +I G  K+G
Sbjct: 683 DMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALIDGYGKLG 742

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +     +  EM  K + PN+ TY  MI GY R  N+ EA RL  EM +KG    ++TY 
Sbjct: 743 QMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKGIVPDSITYK 802

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             I G    G   EA+   +E     I      +N LIQ
Sbjct: 803 EFIYGYLKQGGVLEAFKGSDEENYAAIIEG---WNKLIQ 838



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 110/229 (48%), Gaps = 4/229 (1%)

Query: 202 SGYLIQAFCNDGKVSEGY---ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           S  LI+ +C   K    Y   ++   +   G+ P  T  N L++       F +  E   
Sbjct: 204 SDLLIEVYCTQFKRDGCYLALDVFPVLANKGMFPSKTTCNILLTSLVRANEFQKCCEAFD 263

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +V +  +PD + +   IN  CK  K  EA ++F+ ++E G  P+ V + TVI GL   G
Sbjct: 264 -VVCKGVSPDVYLFTTAINAFCKGGKVEEAVKLFSKMEEAGVAPNVVTFNTVIDGLGMCG 322

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A     +M+ +G+ P   TY+ ++ G  R   + +A  + KEM  KG+    + YN
Sbjct: 323 RYDEAFMFKEKMVERGMEPTLITYSILVKGLTRAKRIGDAYFVLKEMTKKGFPPNVIVYN 382

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LI      G  ++A  + + M  KG+     TYNTLI+GYCK G+  N
Sbjct: 383 NLIDSFIEAGSLNKAIEIKDLMVSKGLSLTSSTYNTLIKGYCKNGQADN 431


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 184/371 (49%), Gaps = 15/371 (4%)

Query: 70  FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL 129
           F   +  R F     ++ ++I+  + + S+ GF  + V    L   L +A     A++  
Sbjct: 10  FTYGILIRGF-SSAGDLDIAIQLLEEMKSN-GFEGNAVVHTTLMKGLCDAGRVVEALEHF 67

Query: 130 DSTG--FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            +     +P+  +    +  LC++G  +EA     ++   G      T+++ + G  K  
Sbjct: 68  RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFG 127

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCND-GKVSEGYELLRQVLEDGLVPENTAF 237
             +  +++  D+I+ G          +IQ  CN    V    ++L  V+  G  P    F
Sbjct: 128 SEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMF 187

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N +I+ FC+ K+     +LL  M+ +   P+ FT+  +I GLCK+ +  EA ++   +  
Sbjct: 188 NLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVT 247

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G  P+ V Y+TVI+GLCK G + DA +++  M  +   PN  T+N +I G C+   +EE
Sbjct: 248 GGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEE 307

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI-FRDVITYNTLI 416
           A++L+  M + G     +TYN+LI GLC   + DEA+ LF+ + + G+   + +TY+TL 
Sbjct: 308 ARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLF 367

Query: 417 QGYCKEGKIVN 427
            GY   G++ +
Sbjct: 368 HGYAALGRMAD 378



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 163/336 (48%), Gaps = 14/336 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD+++   L  +L +A  F  A   L    + G +P+  +    I  LC+ G  E+AF 
Sbjct: 75  APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFR 134

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               + + G+  S   + + +   C K +  +L  K+   +I  G+         +I  F
Sbjct: 135 VLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGF 194

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C    +   Y+LL  ++E G VP    F  LI+  C+    G   +LL  MV    +P+ 
Sbjct: 195 CKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNV 254

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VINGLCK  +  +AY +F  ++ R   P+ V +  +I GLCK   + +AR+++  
Sbjct: 255 VTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHR 314

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLCLHG 388
           M   G  P+  TYNS+I G C+   ++EA +L + + + G      VTY+TL  G    G
Sbjct: 315 MRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALG 374

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           R  +A  +F  +  KG   D+ TY +LI  YCK  +
Sbjct: 375 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSR 410



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 169/361 (46%), Gaps = 17/361 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
           L +Q  V  +   FQ +       P++V+ N+L D L +A+  + A      +  TG +P
Sbjct: 264 LCKQGQVDDAYELFQLMERR-NCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAP 322

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS-IKTWNSALLGCIKIDRTDLVWKL 195
           +  +    I  LC+S  ++EAF  F  + E GV  +   T+++   G   + R     ++
Sbjct: 323 DIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRI 382

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +  L++ G+         LI  +C   +  E  EL+ ++   G  P     + ++    E
Sbjct: 383 FSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFE 442

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN---DLKERGYVPD 303
             +  R  +L  +M AR    D   Y  V+ G+ ++ K  +A  V     D ++R + P 
Sbjct: 443 GNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPS 502

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           +     ++  LC++G   DA+++  +M  +G      +YN ++ G  R+   +EA ++ +
Sbjct: 503 SSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFE 562

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            M+  G      T N +I+ LC   + D+AY L + M++ G   D+ T NTLI GYCK G
Sbjct: 563 AMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSG 622

Query: 424 K 424
           +
Sbjct: 623 R 623



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 157/341 (46%), Gaps = 16/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+ + + + L +      A +    ++     PN  +  + I  LC++  IEEA
Sbjct: 249 GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEA 308

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----------LIQ 207
              + +++E G    I T+NS + G  K  + D  ++L+  + ESG           L  
Sbjct: 309 RQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFH 368

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +   G++++   +   +++ G  P+   +  LI  +C+      V EL+  M ++   P
Sbjct: 369 GYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPP 428

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              T   V+ GL +      A ++F+ +  RG   D ++Y  V+ G+ +      A  + 
Sbjct: 429 RVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVL 488

Query: 328 FEMIHK---GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++I K      P+    ++++   C++   ++AK+L  +M ++G+     +YN L++GL
Sbjct: 489 EQVIDKRDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGL 548

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               R DEA  +FE M   G   ++ T N +I   C   K+
Sbjct: 549 SRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKV 589



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 91/162 (56%), Gaps = 1/162 (0%)

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +AR   P+ FTY  +I G   +     A ++  ++K  G+  + V++TT++ GLC  G +
Sbjct: 1   MARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRV 60

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A +  F  + K   P+  TY +++H  C+    +EA+ + +EM+ +G    TVT++TL
Sbjct: 61  VEALE-HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTL 119

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           I GLC  G  ++A+ + E++ Q+G+      + T+IQ  C +
Sbjct: 120 IDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNK 161



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 114/270 (42%), Gaps = 16/270 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYI 145
           + R F  L    GFSPDL +   L   +     A      ++ + S GF P  N+L   +
Sbjct: 379 ACRIFSMLVDK-GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 437

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--- 202
             L E    E A   F  +   G       +N  + G  +  + +    +   +I+    
Sbjct: 438 GGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDR 497

Query: 203 ---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
                      L+++ C  G+  +  +LL ++ E G     +++N L+S     + +   
Sbjct: 498 KFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEA 557

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           +++   MV+   AP+  T   VI+ LC + K  +AY +   + + G  PD     T+I G
Sbjct: 558 TQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGG 617

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
            CK G    ARK+  EM   GL PN+ T++
Sbjct: 618 YCKSGRADLARKLLEEMTEAGLEPNDTTHD 647



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 1/89 (1%)

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           +PN++TY  +I G+    +L+ A +L +EM   G+    V + TL+ GLC  GR  EA  
Sbjct: 6   MPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALE 65

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            F  MA K    DV+TY  L+   CK GK
Sbjct: 66  HFRAMA-KDCAPDVMTYTALVHALCKAGK 93


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 127/455 (27%), Positives = 191/455 (41%), Gaps = 53/455 (11%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIETKE---SQQLYTEIAKQVCKITRTKPRWEQTLLS 63
           S L I R    ++ N N   + L I +      Q L+ +    V   +   P W   +L 
Sbjct: 78  SFLCIFRLPFVSYSNANNSFQYLDIGSLRKIIQQDLWNDPKIVVLFDSALAPIWVSKIL- 136

Query: 64  DIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
                     L  RE  K      L+++FF+W  S  GF     S  ++   +  AR + 
Sbjct: 137 ----------LGLREDPK------LALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYT 180

Query: 124 VAMDFLDST--------GFS----------------PNPNSLELYIQCLCESGLIEEAFC 159
            A D +           GF                       ++      E GL+EEA  
Sbjct: 181 DAHDTVKEVIMNSRMDMGFPVCNIFDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANE 240

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
            FS+++        ++ N  L    K     LV K ++D+I +G          +I   C
Sbjct: 241 CFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLC 300

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +G +     L  Q+ E GL P+   +N LI  + +  +   V+ L + M      PD  
Sbjct: 301 KEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDII 360

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +IN  CK  K   A+  F+++K  G  P+ V Y+T+I   CK G +  A K++ +M
Sbjct: 361 TYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDM 420

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              GLLPNE+TY S+I   C+  NL EA +L  +ML  G     VTY  L+ GLC  GR 
Sbjct: 421 RRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRM 480

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA  +F  M + GI  +   Y  L+ GY K  ++
Sbjct: 481 IEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERM 515



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 175/358 (48%), Gaps = 19/358 (5%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFS 135
            L++ N     +R F+ L       P   SCN L   L ++   ++   F +     G +
Sbjct: 234 LLEEANECFSRMRNFRTL-------PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIA 286

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +  + I  LC+ G +E +   F +++EMG+   + T+NS + G  K+   + V  L
Sbjct: 287 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 346

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           ++         D+I    LI  +C   K+   +E   ++  +GL P    ++ LI  FC+
Sbjct: 347 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 406

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +       +L   M      P+ FTY  +I+  CK+    EA+++ ND+ + G   + V 
Sbjct: 407 EGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 466

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YT ++ GLCK G + +A +++  M+  G+ PN+  Y +++HGY + + +E+A ++ K+M 
Sbjct: 467 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 526

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +       + Y ++I G C   + +E   + EEM  +GI  + +   T+I  Y K GK
Sbjct: 527 ECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 584



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 169/366 (46%), Gaps = 19/366 (5%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE------ARAFKVAMDF 128
           F    L +  N  L  +FF  +    G +P + + NV+ D L +      +R   V M  
Sbjct: 259 FLLHRLSKSGNGQLVRKFFNDMIGA-GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR- 316

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
               G SP+  +    I    + G +EE    F+++K++G    I T+N  +    K ++
Sbjct: 317 --EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 374

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
               ++ + ++  +G          LI AFC +G +    +L   +   GL+P    +  
Sbjct: 375 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTS 434

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C+  N     +LL+ M+      +  TY  +++GLCK+ + +EA  VF  + + G
Sbjct: 435 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 494

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P+  +YT ++HG  K   + DA K+  +M    + P+   Y S+I G+C    LEE K
Sbjct: 495 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 554

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            + +EM  +G     V   T+I      G++ +A + F+EM   G+   ++TY  LI G 
Sbjct: 555 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 614

Query: 420 CKEGKI 425
           CK G +
Sbjct: 615 CKAGIV 620



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L +   +      A ++   + + G  PN  +    I   C+ G+++ A
Sbjct: 354 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 413

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  ++  G+  +  T+ S +    K       WKL +D++++G          L+  
Sbjct: 414 IKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 473

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E  E+ R +L+DG+ P    +  L+  + + +      ++L  M   N  PD
Sbjct: 474 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 533

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I G C  RK  E   +  ++K RG   + V+ TT+I    K G   DA   + 
Sbjct: 534 LILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 593

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G+     TY  +I G C+   +E A      ML  G       Y +LI GLC + 
Sbjct: 594 EMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNN 653

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + A  LF+EM  +G+  D+  +  LI G  K G +
Sbjct: 654 CIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNL 690



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 162/372 (43%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ + L D+  +    + A+  F+D   TG  PN  +    I   C++G + EA
Sbjct: 389 GLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEA 448

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +   + + + GV  +I T+ + L G  K  R     +++  +++ G          L+  
Sbjct: 449 WKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHG 508

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +    ++ +  ++L+Q+ E  + P+   +  +I   C ++       +L  M +R  + +
Sbjct: 509 YIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISAN 568

Query: 269 ---------------------NF--------------TYEEVINGLCKSRKRLEAYRVFN 293
                                NF              TY  +I+GLCK+     A   F 
Sbjct: 569 PVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFC 628

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +   G  P+  +YT++I GLCK   +  A+K++ EM  +G+ P+   + ++I G  +  
Sbjct: 629 RMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 688

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           NL+EA  L   M +         Y +L++G    G   +A   F EM +KGI  + +   
Sbjct: 689 NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 748

Query: 414 TLIQGYCKEGKI 425
            L++ Y K G++
Sbjct: 749 CLLREYYKRGQL 760



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/323 (22%), Positives = 140/323 (43%), Gaps = 12/323 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   ++V+   L D L +A     A +   S    G SPN       +    ++  +E+A
Sbjct: 459 GVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 518

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CI--KIDRTDLVWK------LYHDLIESGYLIQA 208
                ++ E  +   +  + S + G C   K++ T L+ +      +  + + S  +I A
Sbjct: 519 MKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 578

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   GK S+     +++ + G+      +  LI   C+        +    M++    P+
Sbjct: 579 YFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQPN 638

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLCK+     A ++F++++ RG  PD   +T +I G  K G L +A  +  
Sbjct: 639 VAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLIS 698

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M    +  + + Y S++ G+ +   L +A++   EM++KG     V    L+      G
Sbjct: 699 RMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRG 758

Query: 389 RTDEAYHLFEEMAQKGIFRDVIT 411
           + DEA  L  EM + G+  +  T
Sbjct: 759 QLDEAIELKNEMERMGLITESAT 781


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 118/406 (29%), Positives = 197/406 (48%), Gaps = 24/406 (5%)

Query: 40  YTEIAKQVCKITRTKPRWE-----QTLLSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +      T L  IP+ F++N      + L   N    ++   
Sbjct: 129 FTPMLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN---ILLKGLCDDNRSQEALELL 185

Query: 94  QWLHSHYG-FSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           Q +    G   PD+VS   + +   +     +A+    + LD  G  PN  +    I  L
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDR-GILPNVVTYSSIIAAL 244

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW---KLYHDLIESGY 204
           C++  +++A    + + + GV  + +T+NS + G C      + +    K++ D +E   
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+   C +G+ +E  ++   + + GL PE T +  L+  +  K     +  LL  
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P+++ +  +I    K  K  +A  VF+ ++++G  PDTV Y TVI  LCK G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA + + +MI + L P    YNS+IH  C  D  ++AK L  EMLD+G    T+ +N+
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNS 484

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I   C  GR  E+  LF+ M + G+  D+ITY+TLI GYC  GK+
Sbjct: 485 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 530



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 163/347 (46%), Gaps = 17/347 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I F + +HS  G  PD+V+ N L D L +      A    DS    G  P   +    +
Sbjct: 288 AIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----KIDRTDLVWK------ 194
           Q     G + E       +   G+  +   +  ++L C      K+D+  LV+       
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVF--SILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  D +  G +I   C  G+V +      Q++++ L P N  +N LI   C    + +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           EL+  M+ R    D   +  +I+  CK  + +E+ ++F+ +   G  PD + Y+T+I G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGY 524

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C  G + +A K+   M+  G+ P+  TYN++I+GYC+I  +E+A  L +EM   G     
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +TYN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 139/264 (52%), Gaps = 12/264 (4%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA---------FCNDGKVSEGYEL-LRQ 224
           T+   +  C    R DL +    ++I+ G+++ A          C D + S+  ++ LR+
Sbjct: 93  TYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRR 152

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVINGLCKS 282
           + + G +P   ++N L+   C+        ELL  M     +  PD  +Y  VING  K 
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +AY  ++++ +RG +P+ V Y+++I  LCK   +  A ++   M+  G++PN  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           NS++HGYC     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F+ M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
           +G+  ++ TY TL+QGY  +G +V
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALV 356



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESG 152
           +  G  P++ S N+L   L +    + A++ L     D     P+  S    I    + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------- 205
            +++A+  + ++ + G+  ++ T++S +    K    D   ++   ++++G +       
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 206 --IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
             +  +C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  ++ G       +E + + + +   G  P+  +++ +I    K G +  A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +GL P+  TY ++I   C+   +E+A R  ++M+D+      + YN+LI  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC+  + D+A  L  EM  +GI  D I +N++I  +CKEG+++
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 145/300 (48%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +    I  LC+SG +E+A   F ++ +  +      +NS +      D+ D  
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P+   ++ LI  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 523

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C        ++LL +MV+    PD  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y  ++ GL +      A++++  +   G      TYN ++HG C+ +  +EA R+ +
Sbjct: 584 IITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +        T T+N +I  L   GR DEA  LF  ++  G+  DV TY+ + +   ++G
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 50/165 (30%), Positives = 85/165 (51%), Gaps = 7/165 (4%)

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           A    P+  TY  ++ G C    RL+  +    ++ ++G++ D + +T ++ GLC     
Sbjct: 84  ADEVTPNLCTYG-ILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRT 142

Query: 321 GDARKMWF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVT 376
            DA  +    M   G +PN ++YN ++ G C  +  +EA  L + M D G G+     V+
Sbjct: 143 SDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDG-GDCPPDVVS 201

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y T+I G    G  D+AY  + EM  +GI  +V+TY+++I   CK
Sbjct: 202 YTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCK 246



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGL-CKMGWLG-----DARKMWFEMIHKG---LLP 337
           +A  VF++L  RG           I+GL C +  +       A   +  M   G   + P
Sbjct: 37  DARHVFDELLRRGR-------GASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTP 89

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL- 396
           N  TY  ++   C    L+        ++ KG+    + +  ++ GLC   RT +A  + 
Sbjct: 90  NLCTYGILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIV 149

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              M Q G   +V +YN L++G C + +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDDNR 177


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 111/417 (26%), Positives = 199/417 (47%), Gaps = 31/417 (7%)

Query: 39  LYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHS 98
           + T I++ + K++ TKP    +L   +PS   N  +          +    + FF+WL +
Sbjct: 38  ILTTISEAI-KVSPTKP-LHSSLKRILPSLTPNHLIDLINLNPHSLSPPSLLSFFKWLST 95

Query: 99  HYGFSPDLVS-CNVLF-----DSLVEAR--------------AFKVAMDFLDSTGFSPNP 138
            + F   + S C +         L EA+              A  V    L++ G   + 
Sbjct: 96  QHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSN 155

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
               + +    +SG   +A   F  +++  +     +        +K++ T   W  Y +
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +++ GY         L+   C + K++E   L  ++ + GL P   +FN LI+ +C+  N
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             +   L   M+     PD FTY  +INGLCK  +  +A ++F ++ +RG VP+ V +TT
Sbjct: 276 LDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTT 335

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+G C  G      +++ +M+ KG+ P+  TYN++I+G C++ +L EAK+L  EM  +G
Sbjct: 336 LINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                 TY  LI G C  G  + A  + +EM ++GI  D + +  LI G+C+EG+++
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVI 452



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 169/351 (48%), Gaps = 13/351 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I+ F+ +  H    P   SC  LFD L++      A  F +     G+ P+     + +
Sbjct: 174 AIQCFRLVRKHNLQIP-FHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLM 232

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------Y 196
             LC+   I EA   F ++ + G+  ++ ++N+ + G  K    D  ++L         +
Sbjct: 233 HRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVF 292

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D+     LI   C +G++ +  +L  ++ + GLVP +  F  LI+  C         E+
Sbjct: 293 PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEI 352

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M+ +   PD  TY  +INGLCK     EA ++  ++ +RG  PD   YT +I G CK
Sbjct: 353 YQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCK 412

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L  A ++  EM+ +G+  +   + ++I G+CR   + EA+R  +EML+ G      T
Sbjct: 413 EGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDAT 472

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           Y  +I G C  G     + L +EM   G    V+TYN L+ G CK+G++ N
Sbjct: 473 YTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKN 523



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 156/329 (47%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+   NVL   L +      A      +   G  P   S    I   C+SG +++ 
Sbjct: 220 GYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQG 279

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     + E  VF  + T++  + G  K  + D   KL+ ++ + G          LI  
Sbjct: 280 FRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLING 339

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+   G E+ +Q+L  G+ P+   +N LI+  C+  +     +L+  M  R   PD
Sbjct: 340 HCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPD 399

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I+G CK      A  +  ++ + G   D V +T +I G C+ G + +A +   
Sbjct: 400 KFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR 459

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+ P++ TY  +IHG+C+  +++   +L KEM   G+    VTYN L+ GLC  G
Sbjct: 460 EMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQG 519

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           +   A  L + M   G+  D ITYN L++
Sbjct: 520 QMKNANMLLDAMLNLGVVPDDITYNILLE 548


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 160/327 (48%), Gaps = 20/327 (6%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           + A ++  + L+    SP+  +    I    + G   EA   + ++   G+  S  T++S
Sbjct: 272 SEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSS 331

Query: 179 ALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  K +R D    +++         D+I    LI  +C   +V +G +LL ++ E G
Sbjct: 332 MIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAG 391

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           LV     +  LI  FC+  +     +LL  MV+    P+  T   +++GLC + K  +A 
Sbjct: 392 LVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDAL 451

Query: 290 RVFNDLKER-----------GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            +F  +++            G  PD   Y  +I GL   G   +A +++ EM H+G++P+
Sbjct: 452 EMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPD 511

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYNS+IHG C+   L+EA ++   M  K +    VT+ TLI G C  GR D+   LF 
Sbjct: 512 TITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFC 571

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EM ++GI  + ITY TLI G+ K G I
Sbjct: 572 EMGRRGIVANAITYITLIHGFRKVGNI 598



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 153/336 (45%), Gaps = 47/336 (13%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  S  + ++C C    +  A   F K+ ++G   ++ T+++ L G    DR      L+
Sbjct: 112 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISEALDLF 171

Query: 197 HDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK------------ 239
           H + +        L+   C +G+V E   LL ++LEDGL P    +              
Sbjct: 172 HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTV 231

Query: 240 -----------------------------LISRFCEKKNFGRVSELLHTMVARNR-APDN 269
                                        +I+ FC    +    +LL  M+ R + +PD 
Sbjct: 232 SALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQEMLERKKISPDV 291

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +IN   K  K  EA  +++++  RG +P T+ Y+++I G CK   L  A  M++ 
Sbjct: 292 VTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYL 351

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KG  P+  T+N++I GYCR   +++  +L  EM + G    T+TY TLI G C  G 
Sbjct: 352 MATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGD 411

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + A  L +EM   G+  +V+T NTL+ G C  GK+
Sbjct: 412 LNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKL 447



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 164/354 (46%), Gaps = 28/354 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  GF P +V+ + L   L        A+D        PN  +    +  LC  G + EA
Sbjct: 140 TKLGFHPTVVTFSTLLHGLCVEDRISEALDLFHQM-CKPNVVTFTTLMNGLCREGRVVEA 198

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
                ++ E G+  +  T+ + + G  K+  T     L   + E  +             
Sbjct: 199 VALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERR 258

Query: 205 --LIQAFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
             +I  FC+ G+ SE  +LL+++LE   + P+   +N LI+ F ++  F    EL   M+
Sbjct: 259 TCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEML 318

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            R   P   TY  +I+G CK  +   A  +F  +  +G  PD + + T+I G C+   + 
Sbjct: 319 PRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVD 378

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           D  K+  EM   GL+ N  TY ++IHG+C++ +L  A+ L +EM+  G     VT NTL+
Sbjct: 379 DGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLL 438

Query: 382 AGLCLHGRTDEAYHLFEEMAQK-----------GIFRDVITYNTLIQGYCKEGK 424
            GLC +G+  +A  +F+ M +            G+  DV TYN LI G   EGK
Sbjct: 439 DGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGK 492



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 160/351 (45%), Gaps = 23/351 (6%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           +  Q +      SPD+V+ N L ++ V+   F  A +  D     G  P+  +    I  
Sbjct: 276 QLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDG 335

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C+   ++ A   F  +   G    I T+N+ + G  +  R D   KL H++ E+G    
Sbjct: 336 FCKQNRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVAN 395

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  FC  G ++   +LL++++  G+ P     N L+   C+        E+  
Sbjct: 396 TITYTTLIHGFCQVGDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFK 455

Query: 259 TMVARNR-----------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
            M                 PD  TY  +I+GL    K LEA  ++ ++  RG VPDT+ Y
Sbjct: 456 AMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 515

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            +VIHGLCK   L +A +M+  M  K   PN  T+ ++I+GYC+   +++   L  EM  
Sbjct: 516 NSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 575

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +G     +TY TLI G    G  + A  +F+EM   G++ D IT   ++ G
Sbjct: 576 RGIVANAITYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTG 626



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/266 (24%), Positives = 104/266 (39%), Gaps = 46/266 (17%)

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
           ES  L   F     + +  +L   ++    +P    F KL+           V  L   M
Sbjct: 45  ESLKLRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLMGVVVRMGRLDVVISLHRKM 104

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             R    + +++  ++   C   K   A   F  + + G+ P  V ++T++HGLC    +
Sbjct: 105 EMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRI 164

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A     ++ H+   PN  T+ ++++G CR   + EA  L   ML+ G     +TY T+
Sbjct: 165 SEA----LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTI 220

Query: 381 IAGLCLHGRT-----------------------------------------DEAYHLFEE 399
           + G+C  G T                                          EA  L +E
Sbjct: 221 VDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQE 280

Query: 400 MAQ-KGIFRDVITYNTLIQGYCKEGK 424
           M + K I  DV+TYN LI  + KEGK
Sbjct: 281 MLERKKISPDVVTYNALINAFVKEGK 306



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 6/190 (3%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   MV     P    + +++ G+     RL+     +   E 
Sbjct: 48  KLRSGFHEIKGLEDAIDLFGDMVRSRPLPSVIDFCKLM-GVVVRMGRLDVVISLHRKMEM 106

Query: 299 GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
             VP +   +T ++   C    L  A   + ++   G  P   T+++++HG C  D + E
Sbjct: 107 RRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDRISE 166

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L  +M         VT+ TL+ GLC  GR  EA  L + M + G+  + ITY T++ 
Sbjct: 167 ALDLFHQMCKP----NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVD 222

Query: 418 GYCKEGKIVN 427
           G CK G  V+
Sbjct: 223 GMCKMGDTVS 232



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 86/219 (39%), Gaps = 23/219 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS--------------TGFSPNPNSLELYIQ 146
           G  P++V+CN L D L +    K A++   +               G  P+  +  + I 
Sbjct: 426 GVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILIS 485

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            L   G   EA   + ++   G+     T+NS + G  K  R D   +++  +    +  
Sbjct: 486 GLINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSP 545

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI  +C  G+V +G EL  ++   G+V     +  LI  F +  N     ++ 
Sbjct: 546 NVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIF 605

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M+A    PD  T   ++ GL    +   A  +  DL+
Sbjct: 606 QEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/290 (30%), Positives = 149/290 (51%), Gaps = 9/290 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-- 202
           ++ LC++  I++A     ++   G+      +N  L G  + ++ +    L+  +++   
Sbjct: 16  VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 75

Query: 203 -------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C   ++   YEL +++   G VP   ++N LI  FC+KK+     +
Sbjct: 76  NPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKD 135

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   MV  N  P+  TY  +I+GL KS K   A  V + + ++G  P+   Y+ +I G C
Sbjct: 136 VFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFC 195

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K+  + +A K+  +M+ +G+ P   TYN +++  CR D LE+A +L + M  +    T V
Sbjct: 196 KVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVV 255

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TYNTL+  LC H + D A+ L+ EM  KG   D ITY+TL  G  + GK+
Sbjct: 256 TYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKV 305



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 118/228 (51%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D +  G +++  C   ++ +    + ++   G+ P+   +N ++S  C+++       L 
Sbjct: 8   DALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLF 67

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             MV +   P+  TY  +INGLCK+ +   AY +F ++  +GYVP  V Y T+I G CK 
Sbjct: 68  EKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKK 127

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             L  A+ ++ +M+    +PN  TY ++I G  +   ++ A  +   M+ KG      TY
Sbjct: 128 KDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATY 187

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + LI G C   R DEA+ L E+M  +GI   V+TYN L+   C+  K+
Sbjct: 188 SCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKL 235



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 12/309 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++   + + L + +    A+  ++   + G  P+       +  LC+   +EEA   
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F K+ +  +  ++ T+N+ + G  K  R +  ++L+ ++   GY         LI  FC 
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +    ++  +++    VP    +  LI    +       +E+L  MV +   P+  T
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK R+  EA+++   +  +G  P  V Y  +++ LC+   L DA K++  M 
Sbjct: 187 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 246

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +   P   TYN+++   C    L+ A RL+ EM+ KG     +TY+TL  GL   G+  
Sbjct: 247 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 306

Query: 392 EAYHLFEEM 400
           EA  L E+M
Sbjct: 307 EAQELMEKM 315



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 64/194 (32%), Positives = 104/194 (53%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+   +  ++ R C+ K        +  M  R   PD F Y  V++GLC+  K  EA  +
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F  + ++   P+ V Y T+I+GLCK   +  A +++ EM  KG +P E +YN++I G+C+
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             +L  AK +  +M+        VTY TLI GL   G+   A  + + M +KG+  +V T
Sbjct: 127 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 186

Query: 412 YNTLIQGYCKEGKI 425
           Y+ LI G+CK  ++
Sbjct: 187 YSCLIDGFCKVRRV 200



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 94/165 (56%)

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +AR   PD  TY  ++  LCK+++  +A     ++  RG  PD  +Y  V+ GLC+   +
Sbjct: 1   MARYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 60

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +AR ++ +M+ + + PN  TYN++I+G C+   +E A  L KEM  KGY  T V+YNTL
Sbjct: 61  EEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTL 120

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C       A  +F++M +     +V+TY TLI G  K GK+
Sbjct: 121 IDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKV 165



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 75/125 (60%)

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD + Y  ++  LCK   + DA     EM  +G+ P+ + YN ++ G C+ + +EEA+ L
Sbjct: 7   PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 66

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            ++M+ +      VTYNTLI GLC   R + AY LF+EMA KG     ++YNTLI G+CK
Sbjct: 67  FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 126

Query: 422 EGKIV 426
           +  +V
Sbjct: 127 KKDLV 131



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 12/208 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEA 157
           G+ P  VS N L D   + +    A D  D    S   PN  +    I  L +SG ++ A
Sbjct: 109 GYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAA 168

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + GV  ++ T++  + G  K+ R D   KL   ++  G          L+ +
Sbjct: 169 AEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNS 228

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K+ + ++L R + +    P    +N L+   C  K       L   M+A+   PD
Sbjct: 229 LCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPD 288

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             TY+ +  GL ++ K  EA  +   +K
Sbjct: 289 AITYDTLAWGLTRAGKVHEAQELMEKMK 316


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 158/336 (47%), Gaps = 12/336 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF    +SCN +  SLV+     V       +       N  + ++ I  LC+ G  ++
Sbjct: 188 YGFRLSALSCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQK 247

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT--------DLVWKLYH-DLIESGYLIQ 207
           A      +K  G   S+ T+N+ + G  K  +         ++V K  H + I    LI 
Sbjct: 248 AGDVVEDMKAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILID 307

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC D  V+   ++  ++   GL P    +N LI+  C          L   M      P
Sbjct: 308 GFCRDENVTAAKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKP 367

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +ING CK +   EA  + +D+ +RG  P+ + + T+I    K G + DA  + 
Sbjct: 368 NVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLR 427

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  G+ PN  TYN +I G+CR  N++EA++L KEM   G     VTYN L+  LC  
Sbjct: 428 SMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKK 487

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G T +A  L +EM + G+    +TYN LI GY +EG
Sbjct: 488 GETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREG 523



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 199/438 (45%), Gaps = 45/438 (10%)

Query: 19  FQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFRE 78
           F +PN+     +  T ++  +   IAKQ    ++ K   ++T  S +    FN       
Sbjct: 32  FSSPNSTYTTPNSHTFDTPTISQLIAKQ--HWSKLKTIVKETNPSSLLQHLFNS------ 83

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
             + Q +++L   +F+W    +G   ++     L   L  A+ +      LDS  F+ N 
Sbjct: 84  --EAQPDLILC--YFKWTQKEFGAIHNVEQFCRLLHLLANAKNYNKIRALLDS--FAKNA 137

Query: 139 --------------------NSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
                               NS+  ++ +    ++G ++ A   F +  + G   S  + 
Sbjct: 138 HYSNSTIFHSLSVLGSWGCANSIIVDMLVWAYVKNGEMDLALEGFDRAGDYGFRLSALSC 197

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLE 227
           N  L+  +K  R  +V  +Y ++I             +I   C  GK  +  +++  +  
Sbjct: 198 NPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDMKA 257

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            G  P    +N +I  +C+     +   LL  MVA+   P+  T+  +I+G C+      
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA 317

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A +VF +++ +G  P+ V Y ++I+GLC  G L +A  +  +M   GL PN  TYN++I+
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G+C+   L+EA+ +  ++  +G     +T+NTLI      GR D+A+ L   M   G+  
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 408 DVITYNTLIQGYCKEGKI 425
           +V TYN LI G+C+EG +
Sbjct: 438 NVSTYNCLIVGFCREGNV 455



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 148/338 (43%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEA-RAFKV--AMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +GFSP +++ N + D   +A + FK    +  + +    PN  +  + I   C    +  
Sbjct: 258 WGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTA 317

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F +++  G+  ++ T+NS + G     + D    L   +   G          LI 
Sbjct: 318 AKKVFEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALIN 377

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC    + E  E+L  + + GL P    FN LI  + +         L   M+     P
Sbjct: 378 GFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCP 437

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I G C+     EA ++  +++  G   D V Y  ++  LCK G    A ++ 
Sbjct: 438 NVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVRLL 497

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   GL P+  TYN++I GY R  N   A  +   M  KG     VTYN LI G C  
Sbjct: 498 DEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNK 557

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+ +EA  L  EM +KG+  +  TY+ L     ++G I
Sbjct: 558 GKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFI 595



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/237 (24%), Positives = 106/237 (44%), Gaps = 12/237 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLI 154
           S  G  P++V+ N L +   + +  K A + LD  G    +PN  +    I    ++G +
Sbjct: 361 SGMGLKPNVVTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRM 420

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           ++AF   S + + GV  ++ T+N  ++G  +        KL           DL+    L
Sbjct: 421 DDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNIL 480

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + A C  G+  +   LL ++ E GL P +  +N LI  +  + N      +   M  + R
Sbjct: 481 VDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGR 540

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
             +  TY  +I G C   K  EA R+ N++ E+G +P+   Y  +   + + G++ D
Sbjct: 541 RANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKGFIPD 597


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 169/339 (49%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H GF+P ++SCN L + LVE+R   +A+     L + G +PN  +  + I+  C  G + 
Sbjct: 177 HCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLA 236

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLI 206
           EA   F  ++E GV  +  ++ + + G     R+DL +K+  D+I +           +I
Sbjct: 237 EAIDVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVI 296

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           + FC++ K+ E   +LR++ + G  P+   +  LIS +C   N  +   L   MV++   
Sbjct: 297 RGFCSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVK 356

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            +      ++ GL +     E    F + K+ G   D   Y  V+  LCK+G + +A ++
Sbjct: 357 TNCVILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVEL 416

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM  K ++P+   Y ++I GY     + +A  +++EM D G+    VTYN L  G   
Sbjct: 417 LVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSR 476

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +G T EA  L   M  +G+  D +T+N +I+G C  GK+
Sbjct: 477 NGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKV 515



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 31/342 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ NVL          + A+   +++++ G  P+  +  + I+ LC  G +++A
Sbjct: 459 GHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDA 518

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA--------- 208
              F  L+E      ++ +++ + G  + +  +  + L   L + G +++          
Sbjct: 519 QAFFDNLEE----KCLENYSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGN 574

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C++G   +   LL  ++   + P    ++K+I    +     +   + + +V R  APD
Sbjct: 575 LCSEGDSEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPD 634

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW--------- 319
             TY  +ING C+  K  EA+ V  D+K RG  PD + YT +++   K+           
Sbjct: 635 VITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSSLDA 694

Query: 320 ------LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
                 + D   +W EM    + P+   Y  +I  +C+ +N+++A  L  EM+D+G    
Sbjct: 695 MKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPD 754

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           TVTY  L++G C  G   +A  LF+EM  KGI  D  T + L
Sbjct: 755 TVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIRPDAHTMSVL 796



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 139/315 (44%), Gaps = 9/315 (2%)

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F+   D + +  FS      +  I+    SG+ ++AF    + K  G    I + N  + 
Sbjct: 133 FEALGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTKHCGFAPQILSCNFLMN 192

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
             ++  + D+   +Y  L   G           I+ FC  G ++E  ++ R + E G+ P
Sbjct: 193 RLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEESGVTP 252

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
            + ++   I   C         ++L  ++      D F Y  VI G C   K  EA  + 
Sbjct: 253 NSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESIL 312

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            +++++G+ PD  +Y  +I G C +G L  A  +  EM+ KG+  N    +S++ G  ++
Sbjct: 313 REMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQM 372

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
               E     KE    G       YN ++  LC  G+ +EA  L  EM  K +  D+I Y
Sbjct: 373 GMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINY 432

Query: 413 NTLIQGYCKEGKIVN 427
            T+I GY  +GK+V+
Sbjct: 433 TTVISGYFLKGKVVD 447


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 183/371 (49%), Gaps = 15/371 (4%)

Query: 70  FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL 129
           F   +  R F     ++ ++I+  + + S  GF  + V    L   L +A     A++  
Sbjct: 58  FTYGILIRGF-SSAGDLDIAIQLLEEMKSS-GFEGNAVVHTTLMKGLCDAGRVVEALEHF 115

Query: 130 DSTG--FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            +     +P+  +    +  LC++G  +EA     ++   G      T+++ + G  K  
Sbjct: 116 RAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFG 175

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCND-GKVSEGYELLRQVLEDGLVPENTAF 237
             +  +++  D+I+ G          +IQ  CN    V    ++L  V+  G  P    F
Sbjct: 176 SEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMF 235

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N +I+ FC+ K+     +LL  M+ +   P+ FT+  +I GLCK+ +  EA ++   +  
Sbjct: 236 NLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVM 295

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G  P+ V Y+TVI+GLCK G + DA +++  M  +   PN  T+N +I G C+   +EE
Sbjct: 296 GGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEE 355

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI-FRDVITYNTLI 416
           A++L+  M + G     +TYN+LI GLC   + DEA+ LF+ + + G+   + +TY+TL 
Sbjct: 356 ARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLF 415

Query: 417 QGYCKEGKIVN 427
            GY   G++ +
Sbjct: 416 HGYAALGRMAD 426



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 163/336 (48%), Gaps = 14/336 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD+++   L  +L +A  F  A   L    + G +P+  +    I  LC+ G  E+AF 
Sbjct: 123 APDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFR 182

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               + + G+  S   + + +   C K +  +L  K+   +I  G+         +I  F
Sbjct: 183 VLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGF 242

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C    +   Y+LL  ++E G VP    F  LI+  C+    G   +LL  MV    +P+ 
Sbjct: 243 CKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNV 302

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VINGLCK  +  +AY +F  ++ R   P+ V +  +I GLCK   + +AR+++  
Sbjct: 303 VTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHR 362

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLCLHG 388
           M   G  P+  TYNS+I G C+   ++EA +L + + + G      VTY+TL  G    G
Sbjct: 363 MRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALG 422

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           R  +A  +F  +  KG   D+ TY +LI  YCK  +
Sbjct: 423 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSR 458



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/361 (26%), Positives = 169/361 (46%), Gaps = 17/361 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
           L +Q  V  +   FQ L       P++V+ N+L D L +A+  + A      +  TG +P
Sbjct: 312 LCKQGQVDDAYELFQ-LMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAP 370

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS-IKTWNSALLGCIKIDRTDLVWKL 195
           +  +    I  LC+S  ++EAF  F  + E GV  +   T+++   G   + R     ++
Sbjct: 371 DIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRI 430

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +  L++ G+         LI  +C   +  E  EL+ ++   G  P     + ++    E
Sbjct: 431 FSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFE 490

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN---DLKERGYVPD 303
             +  R  +L  +M AR    D   Y  V+ G+ ++ K  +A  V     D ++R + P 
Sbjct: 491 GNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPS 550

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           +     ++  LC++G   DA+++  +M  +G      +YN ++ G  R+   +EA ++ +
Sbjct: 551 SSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFE 610

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            M+  G      T N +I+ LC   + D+AY L + M++ G   D+ T NTLI GYCK G
Sbjct: 611 AMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSG 670

Query: 424 K 424
           +
Sbjct: 671 R 671



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 157/341 (46%), Gaps = 16/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+ + + + L +      A +    ++     PN  +  + I  LC++  IEEA
Sbjct: 297 GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEA 356

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----------LIQ 207
              + +++E G    I T+NS + G  K  + D  ++L+  + ESG           L  
Sbjct: 357 RQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFH 416

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +   G++++   +   +++ G  P+   +  LI  +C+      V EL+  M ++   P
Sbjct: 417 GYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPP 476

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              T   V+ GL +      A ++F+ +  RG   D ++Y  V+ G+ +      A  + 
Sbjct: 477 RVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVL 536

Query: 328 FEMIHK---GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++I K      P+    ++++   C++   ++AK+L  +M ++G+     +YN L++GL
Sbjct: 537 EQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGL 596

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               R DEA  +FE M   G   ++ T N +I   C   K+
Sbjct: 597 SRLQRWDEATQVFEAMVSAGPAPEISTVNVVISWLCSAAKV 637



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/167 (29%), Positives = 92/167 (55%), Gaps = 1/167 (0%)

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L    +AR   P+ FTY  +I G   +     A ++  ++K  G+  + V++TT++ GLC
Sbjct: 44  LFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLC 103

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G + +A +  F  + K   P+  TY +++H  C+    +EA+ + +EM+ +G    TV
Sbjct: 104 DAGRVVEALE-HFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTV 162

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           T++TLI GLC  G  ++A+ + E++ Q+G+      + T+IQ  C +
Sbjct: 163 TFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNK 209



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 115/270 (42%), Gaps = 16/270 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYI 145
           + R F  L    GFSPDL +   L   +     A      ++ + S GF P  N+L   +
Sbjct: 427 ACRIFSMLVDK-GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVL 485

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--- 202
             L E    E A   F  +   G       +N  + G  +  + D    +   +I+    
Sbjct: 486 GGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDR 545

Query: 203 ---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
                      L+++ C  GK  +  +LL ++ E G     +++N+L+S     + +   
Sbjct: 546 KFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEA 605

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           +++   MV+   AP+  T   VI+ LC + K  +AY +   + + G  PD     T+I G
Sbjct: 606 TQVFEAMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGG 665

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
            CK G    ARK+  EM   GL PN+ T++
Sbjct: 666 YCKSGRADLARKLLEEMTEAGLEPNDTTHD 695



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 1/111 (0%)

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LC++    +A  ++   + +  +PN++TY  +I G+    +L+ A +L +EM   G+   
Sbjct: 32  LCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGN 91

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            V + TL+ GLC  GR  EA   F  MA K    DV+TY  L+   CK GK
Sbjct: 92  AVVHTTLMKGLCDAGRVVEALEHFRAMA-KDCAPDVMTYTALVHALCKAGK 141



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/101 (26%), Positives = 47/101 (46%)

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++F+     +  N ++ N  +   CR++  +EA  L +  + +       TY  LI G  
Sbjct: 9   LFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFS 68

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             G  D A  L EEM   G   + + + TL++G C  G++V
Sbjct: 69  SAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVV 109


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 152/292 (52%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   F   +E   +    T    L   +K+    LVW  Y +++E  Y
Sbjct: 73  ITAYLESGFLRDAIECFRLTRENKYWVPFDTCRKVLEHLMKLKYFKLVWSFYKEILECRY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  EA+++F+++ +RG VP+ V +TT+I G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G L  A +++ +M+ +G  P+  TYN++I+G C+  +L +AK L  EM  KG     +
Sbjct: 253 KNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D ++Y  LI G CKEG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVD 364



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 115/222 (51%), Gaps = 2/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           LI A+   G + +  E  R   E+   VP +T   K++    + K F  V      ++  
Sbjct: 72  LITAYLESGFLRDAIECFRLTRENKYWVPFDTC-RKVLEHLMKLKYFKLVWSFYKEILEC 130

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
                 + +  +++  CK  +   A  VF+ + + G  P  V + T+++G  K+G L + 
Sbjct: 131 RYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEG 190

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++   M   G+ P+ YTY+ +I+G C+   ++EA +L  EMLD+G     VT+ TLI G
Sbjct: 191 FRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDG 250

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C +G+ D A  ++++M  +G   D ITYNTLI G CK+G +
Sbjct: 251 HCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIYGLCKKGDL 292



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 37/157 (23%), Positives = 69/157 (43%), Gaps = 13/157 (8%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELY 144
           L++  ++ + S  GFSPD ++ N L   L +      A D  D     G  P+  +    
Sbjct: 259 LAMEIYKQMLSQ-GFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTL 317

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C+ G +E AF    ++ +  +     ++ + + G  K  R+    K+  +++  G 
Sbjct: 318 IDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAEKMLREMLSVGL 377

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                    ++  FC +G V  G +LL+++  DG VP
Sbjct: 378 KPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVP 414


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 171/335 (51%), Gaps = 13/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD ++ + L +   +AR F+ A   +D ++  G  P+       I+ LC++G ++ A  
Sbjct: 30  SPDSITYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALV 89

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
            +  ++      S+ T+   +    K  R      +  D+IE+G          LI  FC
Sbjct: 90  HYRDMQRHCA-PSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFC 148

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G + E   L  Q+LE+   P+   +N LI  +C+++     ++LL  MV     P+  
Sbjct: 149 KLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFI 208

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +++ L KS K ++A+ +   +  R   P    +  +I   CK+G L  A +++  M
Sbjct: 209 TYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLM 268

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             +G LP+ YTYN MI G CR + +++A++L + M + G     VTYN++++GLC   + 
Sbjct: 269 TDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQV 328

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           DEAY ++E +   G F DV+T +TLI G CK  ++
Sbjct: 329 DEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRL 363



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 150/300 (50%), Gaps = 9/300 (3%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P+  +  + +  LC+S  I +A      + E G   ++ T+N+ + G  K+   D    
Sbjct: 99  APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVV 158

Query: 195 LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           L++ ++E+           LI  +C   +  +G +LL+++++ G  P    +N L+    
Sbjct: 159 LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 218

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +   +     L   M+ R+  P +FT+  +I+  CK  +   AY +F  + +RG +PD  
Sbjct: 219 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 278

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  +I G C+   + DAR++   M   G  P+  TYNS++ G C+   ++EA  +++ +
Sbjct: 279 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 338

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + GY    VT +TLI GLC   R D+A  L  EM + G   DV+ Y  LI G+CK  ++
Sbjct: 339 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 398



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 155/350 (44%), Gaps = 47/350 (13%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P +++  +L D+L ++     A   L+     G +PN  +    I   C+ G ++EA  
Sbjct: 99  APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVV 158

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------------- 203
            F+++ E      + T+N  + G  K +R     KL  ++++ G                
Sbjct: 159 LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLV 218

Query: 204 ----------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
                                        +I  FC  G++   YEL + + + G +P+  
Sbjct: 219 KSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIY 278

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +N +IS  C         +LL  M      PD  TY  +++GLCK+ +  EAY V+  L
Sbjct: 279 TYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVL 338

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +  GY  D V  +T+I GLCK   L DA K+  EM   G  P+   Y  +IHG+C+ D L
Sbjct: 339 RNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQL 398

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           +++     EMLDKG   T +TY+ +I  LC   R  +   L + M ++G+
Sbjct: 399 DKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGV 448



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%), Gaps = 1/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ AF    K  E Y+L +  L     P++  ++ LI+ FC+ ++F +   LL  M  R 
Sbjct: 4   LLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEKRG 63

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P N  Y  +I GLC + +   A   + D+ +R   P  + YT ++  LCK   + DA 
Sbjct: 64  IVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISDAS 122

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +MI  G  PN  TYN++I+G+C++ N++EA  L  +ML+        TYN LI G 
Sbjct: 123 LILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGY 182

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C   R  +   L +EM + G   + ITYNTL+    K GK ++
Sbjct: 183 CKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYID 225



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/185 (36%), Positives = 101/185 (54%), Gaps = 1/185 (0%)

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N L+S F  KK      +L    +    +PD+ TY  +ING CK+R   +AYR+ +++++
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG VP   +Y T+I GLC  G +  A   + +M  +   P+  TY  ++   C+   + +
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDM-QRHCAPSVITYTILVDALCKSARISD 120

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  + ++M++ G     VTYNTLI G C  G  DEA  LF +M +     DV TYN LI 
Sbjct: 121 ASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFTYNILID 180

Query: 418 GYCKE 422
           GYCK+
Sbjct: 181 GYCKQ 185



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 121/274 (44%), Gaps = 31/274 (11%)

Query: 100 YGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           YG  P+ ++ N L DSLV++     AF +A   L      P+  +  L I   C+ G ++
Sbjct: 201 YGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML-RRDCKPSHFTFNLMIDMFCKVGQLD 259

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
            A+  F  + + G    I T+N                           +I   C   ++
Sbjct: 260 LAYELFQLMTDRGCLPDIYTYN--------------------------IMISGACRANRI 293

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  +LL ++ E G  P+   +N ++S  C+        E+   +       D  T   +
Sbjct: 294 DDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTL 353

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+GLCKSR+  +A ++  +++  G  PD V YT +IHG CK   L  +   + EM+ KG 
Sbjct: 354 IDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGC 413

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +P   TY+ +I   C+   + +   L K ML++G
Sbjct: 414 VPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 447



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%)

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N ++  + R    +EA  L K  L       ++TY+TLI G C      +AY L +EM +
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           +GI      YNT+I+G C  G++
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRV 84


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 178/399 (44%), Gaps = 57/399 (14%)

Query: 71  NDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD 130
           +DP+ F   L    +  L +R  Q     YG SP   SCN +   L    A ++  +  +
Sbjct: 196 SDPVSFDLLLLCLPSAPLLLRLRQ-----YGISPSPESCNAVLCRLPLDEAVQLFQELPE 250

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
                 N  S  + ++ LC +G I++A   F    EM     + T+   + G   +   +
Sbjct: 251 K-----NTCSYNILLKALCTAGRIKDAHQLFD---EMASPPDVVTYGIMVHGYCTLSELE 302

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              KL  ++   G          +I   C++G+VS+   ++  ++  G+V +   F  ++
Sbjct: 303 TAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           S FC K +          M  R  A D  TY  +INGLC++ +  EA RV  +++++G  
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 302 PDTVMYTTVIHGLCKMGWL--------------------------------GD---ARKM 326
            D V YT +I G CK+G +                                GD   A ++
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM  KGL  N +TYNS+I+G C+  NLE+A R   +M + G      TY T+I  LC 
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               D A+ L +EM  KGI   ++TYN L+ G+C  G++
Sbjct: 543 SKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 47/379 (12%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQ 146
           I+    L       PD+V+  ++          + A+  L    + G   NP +    I 
Sbjct: 269 IKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIA 328

Query: 147 CLCESGLIEEA-------------------------FCA----------FSKLKEMGVFG 171
            LC+ G + +A                         FC           F ++++ G+  
Sbjct: 329 LLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAA 388

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELL 222
              T+ + + G  +        ++  ++ + G          LI  +C  GK++E + + 
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++++  + P    +  L    C++ +    +ELLH M ++    + FTY  +INGLCK+
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKA 508

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +A R   D+ E G  PD   YTT+I  LC+   L  A  +  EM+ KG+ P   TY
Sbjct: 509 GNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTY 568

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N +++G+C    +E  KRL + ML+K     T TYN+L+   C+         +++ M  
Sbjct: 569 NVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628

Query: 403 KGIFRDVITYNTLIQGYCK 421
           + +  +  TYN LI+G+CK
Sbjct: 629 QEVVPNENTYNILIKGHCK 647



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 147/325 (45%), Gaps = 12/325 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G + D V+   L + L  A   K A   +  ++  G   +  +  + I   C+ G + EA
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEA 444

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K+ +  V  ++ T+ +   G  K        +L H++   G          LI  
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +    +  + E GL P+   +  +I   C+ K   R   LL  M+ +   P 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NG C S +     R+   + E+   P+T  Y +++   C    +    +++ 
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ + ++PNE TYN +I G+C+  N++EA   H EM++KG+  T  +YN LI  L    
Sbjct: 625 GMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYN 413
           +  EA  LFE+M ++ +  +   YN
Sbjct: 685 KFTEARRLFEKMRKERLTAEPDVYN 709



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 143/310 (46%), Gaps = 15/310 (4%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   G + +  +    I  LC +G ++EA     ++++ G+     T+   + G  K+
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 187 DRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            +    + +++ +++            L    C  G V    ELL ++   GL      +
Sbjct: 439 GKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTY 498

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFND 294
           N LI+  C+    G + + + TM+  + A   PD +TY  +I  LC+S++   A+ +  +
Sbjct: 499 NSLINGLCKA---GNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQE 555

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + ++G  P  V Y  +++G C  G +   +++   M+ K + PN  TYNS++  YC   N
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           ++    ++K ML +       TYN LI G C      EA +   EM +KG      +YN 
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 415 LIQGYCKEGK 424
           LI+   K+ K
Sbjct: 676 LIRLLNKKKK 685



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 12/277 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+   L D L +      A + L    S G   N  +    I  LC++G +E+A  
Sbjct: 457 TPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
               + E G+   + T+ + +    +    D    L  ++++ G          L+  FC
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 576

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+V  G  LL  +LE  + P  T +N L+ ++C +KN    +E+   M+++   P+  
Sbjct: 577 MSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNEN 636

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I G CK+R   EA    +++ E+G+      Y  +I  L K     +AR+++ +M
Sbjct: 637 TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             + L      YN  I      DNLE    L  E+++
Sbjct: 697 RKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVE 733


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 161/330 (48%), Gaps = 12/330 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  N L  ++ +   F++ +     + + G S +  +  ++I C C    +  A   
Sbjct: 81  PSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAV 140

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +K+ ++G    I T +S L G     R      L   ++E GY         LI     
Sbjct: 141 LAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFL 200

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K SE   L+ Q+++ G  P+   +  +++  C++ +      LL+ M A     +   
Sbjct: 201 HNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAARIKANVVI 260

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+ LCK R    A  +F +++ +G  P+ V Y ++I+ LC  G   DA ++   M+
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            K + PN  T+N++I  + +   L EA++LH+EM+ +     T+TYN LI G C+H R D
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           EA  +F+ M  K    ++ TYNTLI G+CK
Sbjct: 381 EAKQMFKFMVSKDCLPNIQTYNTLINGFCK 410



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD  +   L   L        A+  +D     G  P+  +    +  LC+ G I+ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +K++   +  ++  +N+ +    K    ++   L+ ++   G          LI  
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINC 302

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  +LE  + P    FN LI  F ++       +L   M+ R+  PD
Sbjct: 303 LCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPD 362

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C   +  EA ++F  +  +  +P+   Y T+I+G CK   + D  +++ 
Sbjct: 363 TITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFR 422

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TY ++I G+ +  + + A+ + K+M+        +TY+ L+ GLC +G
Sbjct: 423 EMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYG 482

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D A  +F+ + +  +  ++  YNT+I+G CK GK+
Sbjct: 483 KLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKV 519



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 156/322 (48%), Gaps = 32/322 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
            ++V  N + DSL + R  +VA+D    +++ G  PN  +    I CLC  G   +A   
Sbjct: 256 ANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRL 315

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
            S + E  +  ++ T+N+                          LI AF  +GK+ E  +
Sbjct: 316 LSNMLEKKINPNVVTFNA--------------------------LIDAFFKEGKLVEAEK 349

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L  ++++  + P+   +N LI+ FC         ++   MV+++  P+  TY  +ING C
Sbjct: 350 LHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFC 409

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K ++  +   +F ++ +RG V +TV YTT+I G  + G    A+ ++ +M+   +  +  
Sbjct: 410 KCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIM 469

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY+ ++HG C    L+ A  + K +           YNT+I G+C  G+  EA+ LF  +
Sbjct: 470 TYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL 529

Query: 401 AQKGIFRDVITYNTLIQGYCKE 422
           + K    DV+TYNT+I G C +
Sbjct: 530 SIKP---DVVTYNTMISGLCSK 548



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 139/282 (49%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           +++A   F  + +   F SI  +N  L    K+++ +LV  L          HDL     
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I  FC   ++S    +L ++++ G  P+    + L++ +C  K       L+  MV   
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD FT+  +I+GL    K  EA  + + + +RG  PD V Y TV++GLCK G +  A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  N   +N++I   C+  ++E A  L  EM  KG     VTYN+LI  L
Sbjct: 244 NLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCL 303

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L   M +K I  +V+T+N LI  + KEGK+V
Sbjct: 304 CNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLV 345



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 100/208 (48%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           KV +  +L   +++    P    FNKL+S   +   F  V  L   M     + D +TY 
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
             IN  C+  +   A  V   + + GY PD V  +++++G C    + DA  +  +M+  
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  P+ +T+ ++IHG    +   EA  L  +M+ +G     VTY T++ GLC  G  D A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +L  +M    I  +V+ +NT+I   CK
Sbjct: 243 LNLLNKMEAARIKANVVIFNTIIDSLCK 270


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 170/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + +  +L +A+A   AM+ L++    G  P+  +    +   C SG  +EA
Sbjct: 231 GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 290

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K++  GV  ++ T++S +    K  R+    K++  + + G          L+Q 
Sbjct: 291 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + E + LL  ++ +G+ P++  FN LI  + +++   +   +   M      P+
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  VI+ LCKS    +A   F  + + G  P+ ++YT++IHGLC       A ++  
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G+  N   +NS+I  +C+   + E+++L   M+  G     +TYNTLI G CL G
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA  L   M   G+  D++TY TLI GYC+  ++
Sbjct: 531 KMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRM 567



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 194/410 (47%), Gaps = 31/410 (7%)

Query: 40  YTEIAKQVCKITRTKPRWEQTL-----LSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +  L     L  IP  F++N+ L   + L  +N    ++   
Sbjct: 130 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLL---KGLCDENRSQEALELL 186

Query: 94  QWLHSHYGFS--PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
             +    G    PD+VS N + +   +     +A+    + LD  G  P+  +    I  
Sbjct: 187 HMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDR-GILPDVVTYSSIIAA 245

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL------------LGCIKIDRTDLVWKL 195
           LC++  +++A    + + + GV     T+NS L            +G +K  R+D V   
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP- 304

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             +++    L+   C +G+ +E  ++   + + GL P+   +  L+  +  K     +  
Sbjct: 305 --NVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHA 362

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV     PD+  +  +I    K  K  +A  VF+ +++ G  P+ V Y TVI  LC
Sbjct: 363 LLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLC 422

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + DA   + +MI +GL PN   Y S+IHG C  D  ++A+ L  EMLD+G    T+
Sbjct: 423 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTI 482

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +N++I   C  GR  E+  LF+ M + G+  D+ITYNTLI G C  GK+
Sbjct: 483 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 156/287 (54%), Gaps = 18/287 (6%)

Query: 157 AFCAFSKLKEMG---VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           A   ++++   G   V  ++ T+   +  C +  R DL +    ++++ G+         
Sbjct: 73  AVSRYNRMARAGAGKVTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTP 132

Query: 205 LIQAFCNDGKVSEGYEL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           L++  C D + S+  ++ LR++ E G +P+  ++N L+   C++       ELLH M+A 
Sbjct: 133 LLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLH-MMAD 191

Query: 264 NRA----PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           +R     PD  +Y  V+NG  K     +AY  ++++ +RG +PD V Y+++I  LCK   
Sbjct: 192 DRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQA 251

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A ++   M+  G++P+  TYNS++HGYC     +EA    K+M   G     VTY++
Sbjct: 252 MDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSS 311

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           L+  LC +GR+ EA  +F+ M ++G+  D+ TY TL+QGY  +G +V
Sbjct: 312 LMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALV 358



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 148/327 (45%), Gaps = 35/327 (10%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ +   L        +LVE  A    +D +   G  P+ +   + I    +   +
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHAL---LDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           ++A   FSK+++ G+  ++  +                          G +I   C  G 
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCY--------------------------GTVIDVLCKSGS 426

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V +      Q++++GL P    +  LI   C    + +  EL+  M+ R    +   +  
Sbjct: 427 VDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+  CK  + +E+ ++F+ +   G  PD + Y T+I G C  G + +A K+   M+  G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P+  TY ++I+GYCR+  +++A  L KEM+  G     +TYN ++ GL    RT  A 
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+  + + G   ++ TYN ++ G CK
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCK 633



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 155/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD    N+L  +  +      AM     +   G +PN       I  LC+SG +++A
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+  +I  + S + G    D+ D   +L  ++++ G          +I +
Sbjct: 431 MLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V E  +L   ++  G+ P+   +N LI   C        ++LL +MV+    PD
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C+  +  +A  +F ++   G  P+ + Y  ++ GL        A++++ 
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 610

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +   G      TYN ++HG C+ +  +EA R+ + +        T T+N +I  L   G
Sbjct: 611 SITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCG 670

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R DEA  LF   +  G+  DV TY+ + +   ++G +
Sbjct: 671 RMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSL 707



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 51/377 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D ++   L   L   +    AMD     +   G  P+  S    ++ LC+    +E
Sbjct: 122 GFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQE 181

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------- 205
           A      + +    GS   + ++N+ L G  K   +D  +  YH++++ G L        
Sbjct: 182 ALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSS 241

Query: 206 -IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I A C    + +  E+L  ++++G++P+   +N ++  +C           L  M +  
Sbjct: 242 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG 301

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  ++N LCK+ +  EA ++F+ + +RG  PD   Y T++ G    G L +  
Sbjct: 302 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMH 361

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGY----------------------------------- 349
            +   M+  G+ P+ + +N +I  Y                                   
Sbjct: 362 ALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+  ++++A    ++M+D+G     + Y +LI GLC   + D+A  L  EM  +GI  + 
Sbjct: 422 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNT 481

Query: 410 ITYNTLIQGYCKEGKIV 426
           I +N++I  +CKEG+++
Sbjct: 482 IFFNSIIDSHCKEGRVI 498



 Score = 45.4 bits (106), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT---YN 378
           DAR ++ E++ +G   + Y  N  +    R        R ++ M   G G+ T T   Y 
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNR-MARAGAGKVTPTVHTYA 96

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            LI   C  GR D  +     + +KG   D IT+  L++G C + +
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKR 142


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 173/356 (48%), Gaps = 15/356 (4%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           ++NN++ S   F  L  H   +P     N +  SLV+A+    A+     ++  G   + 
Sbjct: 40  EENNLISS---FNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDF 96

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKID-------RTD 190
            +  + I C  + GL   +F  F+K+ + G   +  T+N+ + G C+K            
Sbjct: 97  FTFNILINCFSQLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDK 156

Query: 191 LVWKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +V + +H D +  G LI   C  G+++   +LL++V    + P    +N +I   C+ K 
Sbjct: 157 VVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKL 216

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                +L   MVA+   PD FTY  +I+G     K   A  +FN +K+    P+   +  
Sbjct: 217 VNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNI 276

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           ++ G CK G + DA+ +   M+   + P+  TYNS++ GYC I+ + +AK +   M   G
Sbjct: 277 LVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGG 336

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                  Y T++ G C     DEA +LFEEM  + I  +V+TY++LI G CK G+I
Sbjct: 337 VIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRI 392



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 172/347 (49%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           Q LH H      GF  D VS   L + L +      A+  L   D     PN     + I
Sbjct: 149 QALHFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMII 208

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             +C++ L+ +AF  +S++    +   + T+N+ + G   + + +    L++ + +    
Sbjct: 209 DNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENIN 268

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+  FC +GKV++   +L  +++D + P+   +N L+  +C      +  ++
Sbjct: 269 PNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDI 328

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             +M +     +   Y  ++NG CK +   EA  +F +++ R  +P+ V Y+++I GLCK
Sbjct: 329 FDSMASGGVIANVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCK 388

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A K+  EM  +G  PN  TY+S++   C+  ++++A  L   + D+G      T
Sbjct: 389 LGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYT 448

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           Y  LI GLC  GR ++A ++FE++  KG   DV  Y  +IQG+C +G
Sbjct: 449 YTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKG 495



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/315 (23%), Positives = 136/315 (43%), Gaps = 12/315 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N L            A+D  +       +PN  +  + +   C+ G + +A   
Sbjct: 234 PDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVV 293

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            + + +  +   + T+NS + G   I++ +    ++  +   G          ++  FC 
Sbjct: 294 LAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANVQIYTTMVNGFCK 353

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              V E   L  ++    ++P    ++ LI   C+        +L+  M  R + P+  T
Sbjct: 354 IKMVDEAINLFEEMRCRKIIPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVT 413

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++ LCK+    +A  +  +LK++G  PD   YT +I GLC+ G L DA+ ++ +++
Sbjct: 414 YSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLL 473

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG   + Y Y  MI G+C     ++A  L  +M D G      TY  +I  L      D
Sbjct: 474 VKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVILSLFEKDEND 533

Query: 392 EAYHLFEEMAQKGIF 406
            A  L  EM  +G+ 
Sbjct: 534 TAEKLLREMIVRGLL 548


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 170/345 (49%), Gaps = 14/345 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F   +H H    P +V  + L  +LV  + +   +     ++      +     + I C 
Sbjct: 72  FNHMIHKHP--LPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNILINCF 129

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
                ++ AF    K+ ++G      T++S + G    D+     + + +++ SGY    
Sbjct: 130 SRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNL 189

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +I+ FC  GK +    LL+++ + G  P+   +N +I   C+ +      ++   
Sbjct: 190 HTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSE 249

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           +  +   PD FTY  +++GLC S ++ EA  +FN++     +PD V +  ++  LCK G 
Sbjct: 250 IKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGM 309

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L +A+ +   MI KG+ PN  TYNS+++GYC  + + EA+ +   M+ KG     V+YN 
Sbjct: 310 LSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNI 369

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LI G C   R DEA  LF+EM+ +G+  +   YNTLI G C+ G+
Sbjct: 370 LINGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGR 414



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD V+ + L + L     F  AM+F D   ++G+ PN ++    I+  C+ G    A
Sbjct: 149 GFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFCKIGKTTVA 208

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+ + G    I  +N+ + G  K         ++ ++   G          L+  
Sbjct: 209 VGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHG 268

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  +  E   L  +++   ++P+   FN L+ + C++        ++  M+ +   P+
Sbjct: 269 LCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPN 328

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NG C   K  EA  VF+ +  +G +P+ V Y  +I+G CK   + +AR+++ 
Sbjct: 329 YATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEARELFD 388

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+PN + YN++I G C+     EA+ L K+M  +G     VT   L+  LC  G
Sbjct: 389 EMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLG 448

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  LF  M    +  +++TY+ LI+   K GKI
Sbjct: 449 YLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 135/286 (47%), Gaps = 9/286 (3%)

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDL 199
           C    IE+A  +F+ +        I  ++  L   ++I     V  L           D+
Sbjct: 60  CSLTNIEDALFSFNHMIHKHPLPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDV 119

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI  F    +V   + +L ++++ G  P+   F+ LI+  C +  F R  E    
Sbjct: 120 FHFNILINCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDE 179

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MVA    P+  TY  +I G CK  K   A  +   + + G  PD V+Y T+I GLCK   
Sbjct: 180 MVASGYQPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRL 239

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A  ++ E+  KG+ P+ +TY+ ++HG C  D  EEA  L  EM+        VT+N 
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L+  LC  G   EA  + + M +KG+  +  TYN+L+ GYC + K+
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKV 345


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 181/365 (49%), Gaps = 29/365 (7%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNS--------LEL 143
           FF+++ S  GF   + +  VL   L     F  A   ++        NS        +E+
Sbjct: 104 FFKFISSQPGFRFTVETYFVLARFLAVHEMFTEAQSLIELVVSRKGKNSASSVFISLVEM 163

Query: 144 YIQCLC------------ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            +  +C            + G I +A   F   ++      I+   + L   +K++ T  
Sbjct: 164 RVTPMCGFLVDALMITYTDLGFIPDAIQCFRLSRKHRFDVPIRGCGNLLDRMMKLNPTGT 223

Query: 192 VWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           +W  Y +++++G+         L+  FC +G +S+  ++  ++ +  L P   +FN LI+
Sbjct: 224 IWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLIN 283

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            +C+  N      L H M      PD FTY  +IN LCK  K   A+ +F+++ +RG +P
Sbjct: 284 GYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIP 343

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + V++TT+IHG  + G +   ++ + +M+ KGL P+   YN++++G+C+  +L  A+ + 
Sbjct: 344 NDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIV 403

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+ +G     +TY TLI G C  G  + A  + +EM Q GI  D + ++ L+ G CKE
Sbjct: 404 DGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKE 463

Query: 423 GKIVN 427
           G++++
Sbjct: 464 GRVID 468



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 166/379 (43%), Gaps = 50/379 (13%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELY 144
           +I+ F+    H  F   +  C  L D +++       +   M+ LD+ GF  N     + 
Sbjct: 189 AIQCFRLSRKHR-FDVPIRGCGNLLDRMMKLNPTGTIWGFYMEILDA-GFPLNVYVFNIL 246

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------- 197
           +   C+ G I +A   F ++ +  +  ++ ++N+ + G  K+   D  ++L H       
Sbjct: 247 MNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRT 306

Query: 198 --DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D+     LI A C + K+   + L  ++ + GL+P +  F  LI           + E
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKE 366

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-- 313
               M+++   PD   Y  ++NG CK+   + A  + + +  RG  PD + YTT+I G  
Sbjct: 367 SYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFC 426

Query: 314 ---------------------------------LCKMGWLGDARKMWFEMIHKGLLPNEY 340
                                            +CK G + DA +   EM+  G+ P++ 
Sbjct: 427 RGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDV 486

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY  M+  +C+  + +   +L KEM   G+  + VTYN L+ GLC  G+   A  L + M
Sbjct: 487 TYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAM 546

Query: 401 AQKGIFRDVITYNTLIQGY 419
              G+  D ITYNTL++G+
Sbjct: 547 LNIGVVPDDITYNTLLEGH 565



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/290 (23%), Positives = 129/290 (44%), Gaps = 12/290 (4%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    I  LC+   ++ A   F ++ + G+  +   + + + G  +    DL+ + 
Sbjct: 308 PDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKES 367

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           Y  ++  G          L+  FC +G +     ++  ++  GL P+   +  LI  FC 
Sbjct: 368 YQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFCR 427

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             +     E+   M       D   +  ++ G+CK  + ++A R   ++   G  PD V 
Sbjct: 428 GGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVT 487

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YT ++   CK G      K+  EM   G +P+  TYN +++G C++  ++ A  L   ML
Sbjct: 488 YTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAML 547

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           + G     +TYNTL+ G   H  + + Y    E+   GI  D+ +Y +++
Sbjct: 548 NIGVVPDDITYNTLLEGHHRHANSSKRYIQKPEI---GIVADLASYKSIV 594


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 166/335 (49%), Gaps = 11/335 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLEL--YIQCLCESGLIEEAFC 159
           F    ++ + + + L +    + A + ++       P++L     ++ LC++  I++A  
Sbjct: 76  FKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKTKRIDDALA 135

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFC 210
              ++   G+      +N  L G  + ++ +    L+  +++            LI   C
Sbjct: 136 TVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLC 195

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              ++   YEL +++   G VP   ++N LI  FC+KK+     ++   MV  N  P+  
Sbjct: 196 KAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVV 255

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GL KS K   A  V + + ++G  P+   Y+ +I G CK+  + +A K+  +M
Sbjct: 256 TYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQM 315

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G+ P   TYN +++  CR D LE+A +L + M  +    T VTYNTL+  LC H + 
Sbjct: 316 VTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQL 375

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D A+ L+ EM  KG   D ITY+TL  G  + GK+
Sbjct: 376 DGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKV 410



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 135/266 (50%), Gaps = 10/266 (3%)

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
           V     T+N+   G  K  R + V ++Y  ++E+GY         LI   C  G   E Y
Sbjct: 6   VIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAY 65

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           +LL  +       +  A++ +I+  C+        EL+  M AR   PD  TY  ++  L
Sbjct: 66  KLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM-ARYAPPDALTYGPIVERL 124

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK+++  +A     ++  RG  PD  +Y  V+ GLC+   + +AR ++ +M+ + + PN 
Sbjct: 125 CKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNV 184

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN++I+G C+   +E A  L KEM  KGY  T V+YNTLI G C       A  +F++
Sbjct: 185 VTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDK 244

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M +     +V+TY TLI G  K GK+
Sbjct: 245 MVRSNCVPNVVTYTTLIDGLSKSGKV 270



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 157/333 (47%), Gaps = 11/333 (3%)

Query: 104 PDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P   + N + D   +A      K     +   G++   +   + I CLC+ G  +EA+  
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH----DLIESGYLIQAFCND 212
              ++          +++ +    K++R     +L+ K+      D +  G +++  C  
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPDALTYGPIVERLCKT 127

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            ++ +    + ++   G+ P+   +N ++S  C+++       L   MV +   P+  TY
Sbjct: 128 KRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTY 187

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +INGLCK+ +   AY +F ++  +GYVP  V Y T+I G CK   L  A+ ++ +M+ 
Sbjct: 188 NTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVR 247

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
              +PN  TY ++I G  +   ++ A  +   M+ KG      TY+ LI G C   R DE
Sbjct: 248 SNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDE 307

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A+ L E+M  +GI   V+TYN L+   C+  K+
Sbjct: 308 AHKLLEQMVTQGIAPTVVTYNILLNSLCRADKL 340



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 144/309 (46%), Gaps = 12/309 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++   + + L + +    A+  ++   + G  P+       +  LC+   +EEA   
Sbjct: 112 PDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLL 171

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F K+ +  +  ++ T+N+ + G  K  R +  ++L+ ++   GY         LI  FC 
Sbjct: 172 FEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLIDGFCK 231

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +    ++  +++    VP    +  LI    +       +E+L  MV +   P+  T
Sbjct: 232 KKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVAT 291

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK R+  EA+++   +  +G  P  V Y  +++ LC+   L DA K++  M 
Sbjct: 292 YSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMA 351

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +   P   TYN+++   C    L+ A RL+ EM+ KG     +TY+TL  GL   G+  
Sbjct: 352 QRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVH 411

Query: 392 EAYHLFEEM 400
           EA  L E+M
Sbjct: 412 EAQELMEKM 420



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 1/166 (0%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  R   P   T+  V +G  K+ +  +   V+  + E GY      Y  +I  LCK+G 
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             +A K+   M  K        Y+++I+  C+++ +EEA+ L ++M      +  +TY  
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKMARYAPPD-ALTYGP 119

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++  LC   R D+A    EEMA +GI  D   YN ++ G C+E K+
Sbjct: 120 IVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKV 165



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 86/208 (41%), Gaps = 12/208 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEA 157
           G+ P  VS N L D   + +    A D  D    S   PN  +    I  L +SG ++ A
Sbjct: 214 GYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAA 273

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + GV  ++ T++  + G  K+ R D   KL   ++  G          L+ +
Sbjct: 274 AEVLDGMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNS 333

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K+ + ++L R + +    P    +N L+   C  K       L   M+A+   PD
Sbjct: 334 LCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPD 393

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             TY+ +  GL ++ K  EA  +   +K
Sbjct: 394 AITYDTLAWGLTRAGKVHEAQELMEKMK 421


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 173/365 (47%), Gaps = 14/365 (3%)

Query: 74  LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-- 131
           L       Q  +V  ++R  + L + +G  PD+VS N +   L  A+ +    D ++   
Sbjct: 193 LVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMV 252

Query: 132 -TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK----- 185
             G  PN  +    I  LC +GL E      +++ + G    I+ + + L G  K     
Sbjct: 253 RVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLE 312

Query: 186 -----IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                +DR    + L  +++    +++  C+  +  +  ELL ++ ++    ++  FN L
Sbjct: 313 VAHEILDRMP-SYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNIL 371

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           +  FC+     RV ELL  M+     PD  TY  VING CK     EA  +   +   G 
Sbjct: 372 VDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGC 431

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+T+ YT V+ GLC      DA  +  +MI +G  PN  T+N++I+  C+   +E+A  
Sbjct: 432 RPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIE 491

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L K+ML  G     ++Y+T+I GL   G+TDEA  L   M  KG+  + I Y+++     
Sbjct: 492 LLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALS 551

Query: 421 KEGKI 425
           KEG+I
Sbjct: 552 KEGRI 556



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/330 (28%), Positives = 144/330 (43%), Gaps = 14/330 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
           N +      A     A     S    PN  +    ++ LC  G I +A     +++  G 
Sbjct: 87  NAMVSGYCRAGQLASARRLAASVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGC 146

Query: 170 FGSIKTWNSAL-LGCIKIDRTDL--VWKLYHDLIESG---------YLIQAFCND-GKVS 216
                 ++  L   C +          ++  DL   G          ++ A C+  G V 
Sbjct: 147 APIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVD 206

Query: 217 EGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           E   LLR +    G  P+  ++N ++   C  K +GRV +L+  MV     P+  T+  +
Sbjct: 207 EALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTL 266

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I  LC++      ++V   + + G  PD  MY TV+ G+CK G L  A ++   M   GL
Sbjct: 267 IGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGL 326

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN   YN+++ G C  +  E+A+ L  EM D       VT+N L+   C +G       
Sbjct: 327 KPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIE 386

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L E+M + G   DVITY T+I G+CKEG I
Sbjct: 387 LLEQMLEHGCVPDVITYTTVINGFCKEGLI 416



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/320 (23%), Positives = 137/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N +   L  A  ++ A + L     +  P    +  + +   C++GL+  
Sbjct: 324 YGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYR 383

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++ E G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 384 VIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLK 443

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+  +  +  +L+ Q++E G  P    FN +I+  C+K    +  ELL  M+    +P
Sbjct: 444 GLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSP 503

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L K G +    +M+
Sbjct: 504 DLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQMF 563

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    + A      M+  G      TY  LI GL   
Sbjct: 564 DNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASE 623

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  +  E+  KG  R
Sbjct: 624 GFVKEAQEMLTELCSKGALR 643



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 107/230 (46%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    +++  C   +     +L+ +++  G  P    FN LI   C    F RV ++L
Sbjct: 224 DVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVL 283

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             MV     PD   Y  V++G+CK      A+ + + +   G  P+ V Y TV+ GLC  
Sbjct: 284 AQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSA 343

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
                A ++  EM       ++ T+N ++  +C+   +     L ++ML+ G     +TY
Sbjct: 344 ERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITY 403

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            T+I G C  G  DEA  L + MA  G   + I+Y  +++G C   + V+
Sbjct: 404 TTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLKGLCSAERWVD 453



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 43/229 (18%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N ++S +C          L  ++      P+ +TY  V+  LC   +  +A  V ++++
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVPV---PPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 297 ERGYVPDTVMYTTVIHGLC---------------------------------------KM 317
            RG  P   MY  ++   C                                       + 
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQG 202

Query: 318 GWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           G + +A ++  ++    G  P+  +YN+++ G C        + L +EM+  G     VT
Sbjct: 203 GSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVT 262

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +NTLI  LC +G  +  + +  +M   G   D+  Y T++ G CKEG +
Sbjct: 263 FNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHL 311


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 178/399 (44%), Gaps = 57/399 (14%)

Query: 71  NDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD 130
           +DP+ F   L    +  L +R  Q     YG SP   SCN +   L    A ++  +  +
Sbjct: 196 SDPVSFDLLLLCLPSAPLLLRLRQ-----YGISPSPESCNAVLCRLPLDEAVQLFQELPE 250

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
                 N  S  + ++ LC +G I++A   F    EM     + T+   + G   +   +
Sbjct: 251 K-----NTCSYNILLKALCTAGRIKDAHQLFD---EMASPPDVVTYGIMVHGYCTLSELE 302

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              KL  ++   G          +I   C++G+VS+   ++  ++  G+V +   F  ++
Sbjct: 303 TAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           S FC K +          M  R  A D  TY  +INGLC++ +  EA RV  +++++G  
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 302 PDTVMYTTVIHGLCKMGWL--------------------------------GD---ARKM 326
            D V YT +I G CK+G +                                GD   A ++
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM  KGL  N +TYNS+I+G C+  NLE+A R   +M + G      TY T+I  LC 
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               D A+ L +EM  KGI   ++TYN L+ G+C  G++
Sbjct: 543 SKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 47/379 (12%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQ 146
           I+    L       PD+V+  ++          + A+  L    + G   NP +    I 
Sbjct: 269 IKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIA 328

Query: 147 CLCESGLIEEA-------------------------FCA----------FSKLKEMGVFG 171
            LC+ G + +A                         FC           F ++++ G+  
Sbjct: 329 LLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAA 388

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELL 222
              T+ + + G  +        ++  ++ + G          LI  +C  GK++E + + 
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++++  + P    +  L    C++ +    +ELLH M ++    + FTY  +INGLCK+
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKA 508

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +A R   D+ E G  PD   YTT+I  LC+   L  A  +  EM+ KG+ P   TY
Sbjct: 509 GNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTY 568

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N +++G+C    +E  KRL + ML+K     T TYN+L+   C+         +++ M  
Sbjct: 569 NVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628

Query: 403 KGIFRDVITYNTLIQGYCK 421
           + +  +  TYN LI+G+CK
Sbjct: 629 QEVVPNENTYNILIKGHCK 647



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 147/325 (45%), Gaps = 12/325 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G + D V+   L + L  A   K A   +  ++  G   +  +  + I   C+ G + EA
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEA 444

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K+ +  V  ++ T+ +   G  K        +L H++   G          LI  
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +    +  + E GL P+   +  +I   C+ K   R   LL  M+ +   P 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NG C S +     R+   + E+   P+T  Y +++   C    +    +++ 
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ + ++PNE TYN +I G+C+  N++EA   H EM++KG+  T  +YN LI  L    
Sbjct: 625 GMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYN 413
           +  EA  LFE+M ++ +  +   YN
Sbjct: 685 KFTEARRLFEKMRKERLTAEPDVYN 709



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 143/310 (46%), Gaps = 15/310 (4%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   G + +  +    I  LC +G ++EA     ++++ G+     T+   + G  K+
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 187 DRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            +    + +++ +++            L    C  G V    ELL ++   GL      +
Sbjct: 439 GKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTY 498

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFND 294
           N LI+  C+    G + + + TM+  + A   PD +TY  +I  LC+S++   A+ +  +
Sbjct: 499 NSLINGLCKA---GNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQE 555

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + ++G  P  V Y  +++G C  G +   +++   M+ K + PN  TYNS++  YC   N
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           ++    ++K ML +       TYN LI G C      EA +   EM +KG      +YN 
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 415 LIQGYCKEGK 424
           LI+   K+ K
Sbjct: 676 LIRLLNKKKK 685



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 124/277 (44%), Gaps = 12/277 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+   L D L +      A + L    S G   N  +    I  LC++G +E+A  
Sbjct: 457 TPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
               + E G+   + T+ + +    +    D    L  ++++ G          L+  FC
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 576

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+V  G  LL  +LE  + P  T +N L+ ++C +KN    +E+   M+++   P+  
Sbjct: 577 MSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNEN 636

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I G CK+R   EA    +++ E+G+      Y  +I  L K     +AR+++ +M
Sbjct: 637 TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             + L      YN  I      DNLE    L  E+++
Sbjct: 697 RKERLTAEPDVYNFYIDLSFNEDNLESTLALCDELVE 733


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/399 (28%), Positives = 178/399 (44%), Gaps = 57/399 (14%)

Query: 71  NDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD 130
           +DP+ F   L    +  L +R  Q     YG SP   SCN +   L    A ++  +  +
Sbjct: 196 SDPVSFDLLLLCLPSAPLLLRLRQ-----YGISPSPESCNAVLCRLPLDEAVQLFQELPE 250

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
                 N  S  + ++ LC +G I++A   F    EM     + T+   + G   +   +
Sbjct: 251 K-----NTCSYNILLKALCTAGRIKDAHQLFD---EMASPPDVVTYGIMVHGYCTLSELE 302

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              KL  ++   G          +I   C++G+VS+   ++  ++  G+V +   F  ++
Sbjct: 303 TAIKLLSEMAARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVM 362

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           S FC K +          M  R  A D  TY  +INGLC++ +  EA RV  +++++G  
Sbjct: 363 SGFCRKGDLAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 302 PDTVMYTTVIHGLCKMGWL--------------------------------GD---ARKM 326
            D V YT +I G CK+G +                                GD   A ++
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM  KGL  N +TYNS+I+G C+  NLE+A R   +M + G      TY T+I  LC 
Sbjct: 483 LHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQ 542

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               D A+ L +EM  KGI   ++TYN L+ G+C  G++
Sbjct: 543 SKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 581



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/379 (24%), Positives = 163/379 (43%), Gaps = 47/379 (12%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQ 146
           I+    L       PD+V+  ++          + A+  L    + G   NP +    I 
Sbjct: 269 IKDAHQLFDEMASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNPVAYTSVIA 328

Query: 147 CLCESGLIEEA-------------------------FCA----------FSKLKEMGVFG 171
            LC+ G + +A                         FC           F ++++ G+  
Sbjct: 329 LLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDEMQKRGLAA 388

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELL 222
              T+ + + G  +        ++  ++ + G          LI  +C  GK++E + + 
Sbjct: 389 DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVH 448

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++++  + P    +  L    C++ +    +ELLH M ++    + FTY  +INGLCK+
Sbjct: 449 NKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKA 508

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +A R   D+ E G  PD   YTT+I  LC+   L  A  +  EM+ KG+ P   TY
Sbjct: 509 GNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTY 568

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N +++G+C    +E  KRL + ML+K     T TYN+L+   C+         +++ M  
Sbjct: 569 NVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628

Query: 403 KGIFRDVITYNTLIQGYCK 421
           + +  +  TYN LI+G+CK
Sbjct: 629 QEVVPNENTYNILIKGHCK 647



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/325 (25%), Positives = 146/325 (44%), Gaps = 12/325 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G + D V+   L + L  A   K A   +  ++  G   +  +  + I   C+ G + EA
Sbjct: 385 GLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEA 444

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K+ +  V  ++ T+ +   G  K        +L H++   G          LI  
Sbjct: 445 FLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLING 504

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +    +  + E GL P+   +  +I   C+ K   R   LL  M+ +   P 
Sbjct: 505 LCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPT 564

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NG C S +     R+   + E+   P+T  Y +++   C    +    +++ 
Sbjct: 565 IVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYK 624

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ + ++PNE TYN +I G+C+  N++EA   H EM++KG+  T  +YN LI  L    
Sbjct: 625 GMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKK 684

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYN 413
           +  EA  LFE+M +  +  +   YN
Sbjct: 685 KFTEARRLFEKMRKDRLTAEPDVYN 709



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 143/310 (46%), Gaps = 15/310 (4%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   G + +  +    I  LC +G ++EA     ++++ G+     T+   + G  K+
Sbjct: 379 DEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKV 438

Query: 187 DRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            +    + +++ +++            L    C  G V    ELL ++   GL      +
Sbjct: 439 GKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTY 498

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFND 294
           N LI+  C+    G + + + TM+  + A   PD +TY  +I  LC+S++   A+ +  +
Sbjct: 499 NSLINGLCKA---GNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQE 555

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + ++G  P  V Y  +++G C  G +   +++   M+ K + PN  TYNS++  YC   N
Sbjct: 556 MLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKN 615

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           ++    ++K ML +       TYN LI G C      EA +   EM +KG      +YN 
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 415 LIQGYCKEGK 424
           LI+   K+ K
Sbjct: 676 LIRLLNKKKK 685



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 123/277 (44%), Gaps = 12/277 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+   L D L +      A + L    S G   N  +    I  LC++G +E+A  
Sbjct: 457 TPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNLEQAMR 516

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
               + E G+   + T+ + +    +    D    L  ++++ G          L+  FC
Sbjct: 517 TMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFC 576

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+V  G  LL  +LE  + P  T +N L+ ++C +KN    +E+   M+++   P+  
Sbjct: 577 MSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNEN 636

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I G CK+R   EA    +++ E+G+      Y  +I  L K     +AR+++ +M
Sbjct: 637 TYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNALIRLLNKKKKFTEARRLFEKM 696

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
               L      YN  I      DNLE    L  E+++
Sbjct: 697 RKDRLTAEPDVYNFYIDLSFNEDNLESTLALCDELVE 733


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 164/344 (47%), Gaps = 24/344 (6%)

Query: 105 DLVSCNVL-----FDSLVEA--------RAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           +++SC VL     + +L+E          AF V   F+ S     +  +  + I  L  +
Sbjct: 555 EMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV-FRFILSRRVLQDVQTYSVLIHGLSRN 613

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIES 202
           G + EAF  FS+L+E G+  +  T+NS + G  K    D   +L           D++  
Sbjct: 614 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 673

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI   C  G++     L   +   GL P    +  ++  +C+ KN     +LL  M+ 
Sbjct: 674 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 733

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R   PD F Y  ++N  CK  K  +A  +F ++ E+G+   TV + T+I G CK G L +
Sbjct: 734 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQE 792

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  EMI K  +PN  TY S+I   C+   + EAKRL  EM ++    T  TY +L+ 
Sbjct: 793 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 852

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G    G   E   LFEEM  KGI  D +TY  +I  YC+EG ++
Sbjct: 853 GYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVM 896



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 174/336 (51%), Gaps = 15/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA----MDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+   N L     +A+  + A    M+ L+     PN ++   +I    ++G +E 
Sbjct: 490 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAFIDGYSKAGEMEI 548

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIK---------IDRTDLVWKLYHDLIESGYLIQ 207
           A   F+++   GV  ++  + + + G  K         + R  L  ++  D+     LI 
Sbjct: 549 ADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIH 608

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               +GK+ E + +  ++ E GL+P    +N LIS  C++ N  + S+LL  M  +   P
Sbjct: 609 GLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINP 668

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+GLCK+ +   A  +F+D++ RG  P+ V Y  ++ G CK      A ++ 
Sbjct: 669 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 728

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ +G+ P+ + YN +++  C+ +  E+A  L +EML+KG+  +TV++NTLI G C  
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKS 787

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+  EA HL EEM +K    + +TY +LI   CK G
Sbjct: 788 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 823



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 166/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   +L+  N L + + +A   + A++ +      G  P+  +  L I+  C    +  A
Sbjct: 350 GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARA 409

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F    ++K+  +  ++ T++  + G  +         +  +++ +G          L+ A
Sbjct: 410 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 469

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G+V E   +L ++ E G++P+   +N LI  FC+ K        L  M+ R   P+
Sbjct: 470 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 529

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY   I+G  K+ +   A R FN++   G +P+  +YT +I G CK G + +A  ++ 
Sbjct: 530 AHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 589

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ + +L +  TY+ +IHG  R   + EA  +  E+ +KG      TYN+LI+G C  G
Sbjct: 590 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 649

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D+A  L EEM  KGI  D++TYN LI G CK G+I
Sbjct: 650 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEI 686



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 170/359 (47%), Gaps = 19/359 (5%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV---AMDFLDSTGFS 135
           FL +  NV L  + F+       F P L+SCN L   L++    ++     D + +    
Sbjct: 160 FLVEAVNVFLGPKNFE-------FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVL 212

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    I   C+ G +++A     ++ E G   ++ T+N  + G  +    D   +L
Sbjct: 213 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIEL 272

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +++ G          LI  FC + +  E   +L ++++ GL PE   +N LI  F  
Sbjct: 273 KRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMR 332

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           + +  +   +   MVA     +   +  ++NG+CK+ K  +A  +  ++ E+G  PD+  
Sbjct: 333 QGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQT 392

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+ +I G C+   +  A ++  EM  + L P   TY+ +I+G CR  NL+    + +EM+
Sbjct: 393 YSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMV 452

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G     V Y TL+      GR +E+  + E M ++GI  DV  YN+LI G+CK  ++
Sbjct: 453 MNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRM 511



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN       +    + G +EE+     +++E G+   +  +NS ++G  K  R +  
Sbjct: 455 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 514

Query: 193 WKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
                +++E          G  I  +   G++        ++L  G++P    +  LI  
Sbjct: 515 RTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 574

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C++ N      +   +++R    D  TY  +I+GL ++ K  EA+ +F++L+E+G +P+
Sbjct: 575 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 634

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y ++I G CK G +  A ++  EM  KG+ P+  TYN +I G C+   +E AK L  
Sbjct: 635 AFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFD 694

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++  +G     VTY  ++ G C       A+ L EEM  +G+  D   YN ++   CKE 
Sbjct: 695 DIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEE 754

Query: 424 K 424
           K
Sbjct: 755 K 755



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 157/337 (46%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  + N L     +      A   L+     G +P+  +  + I  LC++G IE A
Sbjct: 630 GLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERA 689

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF-------- 209
              F  ++  G+  +  T+ + + G  K       ++L  +++  G    AF        
Sbjct: 690 KNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNF 749

Query: 210 -CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C + K  +  +L +++LE G      +FN LI  +C+       + LL  M+ +   P+
Sbjct: 750 CCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQEANHLLEEMIEKQFIPN 808

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+  CK+    EA R++ +++ER  +P    YT+++HG   +G + +   ++ 
Sbjct: 809 HVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVSALFE 868

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG+ P++ TY  MI  YCR  N+ EA +L  E+L KG   +   Y+ LI  LC   
Sbjct: 869 EMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKE 928

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              E   L  E+ + G    + T + + +G+   G +
Sbjct: 929 EFFEVLKLLNEIGESGFRLGLPTCSVIARGFQIAGNM 965



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 149/332 (44%), Gaps = 17/332 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+ N+L D L +A   + A +  D     G +PN  +    +   C+S   +  
Sbjct: 665 GINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKS---KNP 721

Query: 158 FCAFSKLKEM---GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LI 206
             AF  L+EM   GV      +N  L  C K ++ +    L+ +++E G+        LI
Sbjct: 722 TAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLI 781

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           + +C  GK+ E   LL +++E   +P +  +  LI   C+    G    L   M  RN  
Sbjct: 782 EGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVM 841

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY  +++G        E   +F ++  +G  PD + Y  +I   C+ G + +A K+
Sbjct: 842 PTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKL 901

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             E++ KG+  +   Y+++I   C+ +   E  +L  E+ + G+     T + +  G  +
Sbjct: 902 KDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPTCSVIARGFQI 961

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            G  DEA  +   M + G   +  +   L+ G
Sbjct: 962 AGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 993


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+V+ + L +    ++    A+  +D     G+ P+  +    I  L       EA
Sbjct: 145 GYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEA 204

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQA 208
                ++ + G    + T+ + + G  K    DL           K+  D++    +I  
Sbjct: 205 VALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDG 264

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    + + + L  ++   G+ P+   +N LIS  C    +   S LL  M+ R   P+
Sbjct: 265 LCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPN 324

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K +EA ++++++ +R   PD   Y+++I+G C    L +A+ M+ 
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 384

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI K   PN  TYN++I G+C+   +EE   L +EM  +G    TVTYNTLI GL   G
Sbjct: 385 LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 444

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F++M   G+  D+ITY+ L+ G CK GK+
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ N L   L        A+  +D     G  P+  +    +  LC+ G I+ A
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+++  +   +  +N+ + G  K    D  + L++ +   G          LI  
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISC 299

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  ++E  + P    F+ LI  F ++       +L   M+ R+  PD
Sbjct: 300 LCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 359

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C   +  EA  +F  +  +   P+ V Y T+I G CK   + +  +++ 
Sbjct: 360 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFR 419

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TYN++I G  +  + + A+++ K+M+  G     +TY+ L+ GLC +G
Sbjct: 420 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 479

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +FE + +  +  D+ TYN +I+G CK GK+
Sbjct: 480 KLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKV 516



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 168/371 (45%), Gaps = 49/371 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  PDLV+   + + L +     +A+  L           + +Y   I  LC+   I++A
Sbjct: 215 GCQPDLVTYGAVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDA 274

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
           F  F+K++  G+   + T+NS L+ C+    R     +L  ++IE            LI 
Sbjct: 275 FALFNKMETKGIRPDVFTYNS-LISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALID 333

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK+ E  +L  ++++  + P+   ++ LI+ FC          +   M++++  P
Sbjct: 334 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 393

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I G CK+++  E   +F ++ +RG V +TV Y T+I GL + G    A+K++
Sbjct: 394 NVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 453

Query: 328 FEMIHKG-----------------------------------LLPNEYTYNSMIHGYCRI 352
            +M+  G                                   + P+ YTYN MI G C+ 
Sbjct: 454 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKA 513

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+   L   +  KG     + Y T+I+G C  G  +EA  LF EM + G   D   Y
Sbjct: 514 GKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCY 573

Query: 413 NTLIQGYCKEG 423
           NTLI+   ++G
Sbjct: 574 NTLIRARLRDG 584



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGY 204
           +++A   F ++ +     SI  +N  L    K+ + DLV          ++ +DL     
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   ++     +L ++++ G  P+    + L++ +C  K       L+  MV   
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +I+GL    K  EA  + + + +RG  PD V Y  V++GLCK G +  A 
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  +   YN++I G C+  ++++A  L  +M  KG      TYN+LI+ L
Sbjct: 241 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCL 300

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L   M ++ I  +V+T++ LI  + KEGK+V
Sbjct: 301 CNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLV 342



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 144/328 (43%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L   L     +  A   L +      +PN  +    I    + G + EA
Sbjct: 285 GIRPDVFTYNSLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              + ++ +  +   I T++S + G    DR D    ++  +I             LI+ 
Sbjct: 345 EKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   +V EG EL R++ + GLV     +N LI    +  +     ++   MV+    PD
Sbjct: 405 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPD 464

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLCK  K  +A  VF  L++    PD   Y  +I G+CK G + D   ++ 
Sbjct: 465 IITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFC 524

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KG+ PN   Y +MI G+CR    EEA  L +EM + G    +  YNTLI      G
Sbjct: 525 SLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDG 584

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
               +  L +EM   G   D  T + +I
Sbjct: 585 DKAASAELIKEMRSCGFVGDASTISMVI 612



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 63/208 (30%), Positives = 104/208 (50%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K+ +   L  ++++   +P    FNKL+S   + K F  V  L   M     + D ++Y 
Sbjct: 60  KLDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYN 119

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +IN  C+  +   A  V   + + GY PD V  +++++G C    + DA  +  +M+  
Sbjct: 120 ILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 179

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  P+  T+N++IHG    +   EA  L  +M+ +G     VTY  ++ GLC  G  D A
Sbjct: 180 GYKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLA 239

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             L ++M +  I  DV+ YNT+I G CK
Sbjct: 240 LSLLKKMEKGKIEADVVIYNTIIDGLCK 267



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 27/232 (11%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    I+  C++  +EE    F ++ + G+ G+  T+N+ + G  +    D+  K+
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +  ++  G          L+   C  GK+ +   +   + +  + P+   +N +I   C+
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   +L  ++  +   P+   Y  +I+G C+   + EA  +F ++KE G +PD+  
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGC 572

Query: 307 YTTVIHG----------------LCKMGWLGDAR--KMWFEMIHKGLLPNEY 340
           Y T+I                  +   G++GDA    M   M+H G L   Y
Sbjct: 573 YNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 624


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 161/328 (49%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N +  +L +A+A   AM+ L S    G  PN  +    +   C SG  +EA
Sbjct: 229 GILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEA 288

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                K+   GV   + T+NS                          L+   C +G+ +E
Sbjct: 289 IGFLKKMHSDGVEPDVVTYNS--------------------------LMDYLCKNGRCTE 322

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             ++   + + GL PE T +  L+  +  K     +  LL  MV     P+++ +  +I 
Sbjct: 323 ARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILIC 382

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
              K  K  +A  VF+ ++++G  PDTV Y TVI  LCK G + DA + + +MI + L P
Sbjct: 383 AYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSP 442

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
               YNS+IH  C  D  ++AK L  EMLD+G    T+ +N++I   C  GR  E+  LF
Sbjct: 443 GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLF 502

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + M + G+  ++ITY+TLI GYC  GK+
Sbjct: 503 DLMVRIGVKPNIITYSTLIDGYCLAGKM 530



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 139/264 (52%), Gaps = 12/264 (4%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQ 224
           T+   +  C    R DL +    ++I+ G+         L++  C D + S+  ++ LR+
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVINGLCKS 282
           + + G +P   ++N L+   C++       ELL  M     +  PD  +Y  VING  K 
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +AY  ++++ +RG +P+ V Y ++I  LCK   +  A ++   M+  G++PN  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           NS++HGYC     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F+ M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
           +G+  ++ TY TL+QGY  +G +V
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALV 356



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 163/347 (46%), Gaps = 17/347 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I F + +HS  G  PD+V+ N L D L +      A    DS    G  P   +    +
Sbjct: 288 AIGFLKKMHSD-GVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLL 346

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----KIDRTDLVWK------ 194
           Q     G + E       +   G+  +   +  ++L C      K+D+  LV+       
Sbjct: 347 QGYATKGALVEMHGLLDLMVRNGIHPNHYVF--SILICAYAKQGKVDQAMLVFSKMRQQG 404

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L  D +  G +I   C  G+V +      Q++++ L P N  +N LI   C    + +  
Sbjct: 405 LNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           EL+  M+ R    D   +  +I+  CK  + +E+ ++F+ +   G  P+ + Y+T+I G 
Sbjct: 465 ELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGY 524

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C  G + +A K+   M+  G+ P+  TYN++I+GYC+I  +E+A  L +EM   G     
Sbjct: 525 CLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPDI 584

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +TYN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 585 ITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCK 631



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 164/343 (47%), Gaps = 14/343 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESG 152
           +  G  P++ S N+L   L +    + A++ L     D     P+  S    I    + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------- 205
            +++A+  + ++ + G+  ++ T+NS +    K    D   ++   ++++G +       
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 206 --IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
             +  +C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  ++ G       +E + + + +   G  P+  +++ +I    K G +  A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +GL P+  TY ++I   C+   +E+A R  ++M+D+      + YN+LI  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC+  + D+A  L  EM  +GI  D I +N++I  +CKEG+++
Sbjct: 454 LCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVI 496



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +    I  LC+SG +E+A   F ++ +  +      +NS +      D+ D  
Sbjct: 404 GLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKA 463

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P    ++ LI  
Sbjct: 464 KELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDG 523

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C        ++LL +MV+    PD  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 524 YCLAGKMDEATKLLASMVSVGMKPDCVTYNTLINGYCKISRMEDALVLFREMESSGVSPD 583

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y  ++ GL +      A++++  +   G      TYN ++HG C+ +  +EA R+ +
Sbjct: 584 IITYNIILQGLFQTRRTAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQ 643

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +        T T+N +I  L   GR DEA  LF  ++  G+  DV TY+ + +   ++G
Sbjct: 644 NLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQG 703



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 81/159 (50%), Gaps = 5/159 (3%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I   C + +    +    ++ ++G+  D + +T ++ GLC      DA  +
Sbjct: 89  PNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 148

Query: 327 WF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIA 382
               M   G +PN ++YN ++ G C  +  +EA  L + M D G G+     V+Y T+I 
Sbjct: 149 VLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDG-GDCPPDVVSYTTVIN 207

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G    G  D+AY  + EM  +GI  +V+TYN++I   CK
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCK 246



 Score = 47.0 bits (110), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 17/148 (11%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGL-CKMGWLG-----DARKMWFEMIHKG---LLP 337
           +A  VF++L  RG           I+GL C +  +       A   +  M   G   + P
Sbjct: 37  DARHVFDELLRRGR-------GASIYGLNCALADVARHSPAAAVSRYNRMARAGADEVTP 89

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL- 396
           N  TY  +I   C    L+        ++ KG+    + +  L+ GLC   RT +A  + 
Sbjct: 90  NLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIV 149

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              M Q G   +V +YN L++G C E +
Sbjct: 150 LRRMTQLGCIPNVFSYNILLKGLCDENR 177


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 157/328 (47%), Gaps = 44/328 (13%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-- 199
           +L ++  CE    +EAF  F  +KE G+   I+T N  L   +K++R ++ W LY ++  
Sbjct: 183 DLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFR 242

Query: 200 --IES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             I S       ++   C +GK+ +  E +  +   G  P   ++N +I  +  + N   
Sbjct: 243 LRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEG 302

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +L  M  +   PD++TY  +I+G+CK  +  EA  +F+ + E G VP+ V Y T+I 
Sbjct: 303 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 362

Query: 313 GLCKMGWL-----------------------------------GDARKMWFEMIHKGLLP 337
           G C  G L                                   G+A  M  EM  KG++P
Sbjct: 363 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 422

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN +I+GY R  N ++A  LH EML KG   T VTY +LI  L    R  EA  LF
Sbjct: 423 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 482

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E++  +G+  DVI +N ++ G+C  G +
Sbjct: 483 EKILDQGVSPDVIMFNAMVDGHCANGNV 510



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 163/338 (48%), Gaps = 29/338 (8%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           R F       GF P++VS N +   + S       +  +D +   G  P+  +    I  
Sbjct: 269 REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISG 328

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           +C+ G +EEA   F K+ E+G+  +  T+N+                          LI 
Sbjct: 329 MCKEGRLEEASGLFDKMVEIGLVPNAVTYNT--------------------------LID 362

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +CN G +   +    ++++ G++P  + +N L+     +   G   +++  M  +   P
Sbjct: 363 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 422

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +ING  +     +A+ + N++  +G  P  V YT++I+ L +   + +A  ++
Sbjct: 423 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 482

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++ +G+ P+   +N+M+ G+C   N+E A  L KEM  K      VT+NTL+ G C  
Sbjct: 483 EKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 542

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+ +EA  L +EM ++GI  D I+YNTLI GY + G I
Sbjct: 543 GKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDI 580



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L D        + A  + D     G  P+ ++  L +  L   G + EA
Sbjct: 349 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 408

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++++ G+     T+N  + G  +       + L+++++  G          LI  
Sbjct: 409 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYV 468

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                ++ E  +L  ++L+ G+ P+   FN ++   C   N  R   LL  M  ++  PD
Sbjct: 469 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPD 528

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++ G C+  K  EA  + +++K RG  PD + Y T+I G  + G + DA ++  
Sbjct: 529 EVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRD 588

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           EM+  G  P   TYN++I   C+    + A+ L KEM++KG      TY +LI G+
Sbjct: 589 EMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 644



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 37/202 (18%)

Query: 261 VARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---------------- 302
           ++R+R     +  ++ ++   C+ R+  EA++ F  +KE+G VP                
Sbjct: 169 LSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLN 228

Query: 303 -----------------DTVMYT--TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
                             + +YT   +++ LCK G L  AR+    M   G  PN  +YN
Sbjct: 229 RMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYN 288

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++IHGY    N+E A+R+   M  KG    + TY +LI+G+C  GR +EA  LF++M + 
Sbjct: 289 TIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 348

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           G+  + +TYNTLI GYC +G +
Sbjct: 349 GLVPNAVTYNTLIDGYCNKGDL 370


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G + D+ +   + D L + +  + A   M+ + + G +P   +    +  LC+ G +EEA
Sbjct: 29  GCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEA 88

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC------- 210
                K+ + G    + T+ S + G  K  R+   +KL+ ++   G  +   C       
Sbjct: 89  IDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRG 148

Query: 211 --NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               GK+ +   + + +   G VP+    + +I   C+    G    +  +M AR  AP+
Sbjct: 149 LLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPN 208

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLCK+RK   A  +   +K+    PDT+ Y  +I GLCK G +  AR  + 
Sbjct: 209 EVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFD 268

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G  P+ YTYN +I G+C+  N + A  +  +M         VTY TLI+GLC   
Sbjct: 269 EMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRR 328

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  +A   ++ M ++G   D   Y++L+ G CK GK+
Sbjct: 329 QLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGKL 365



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 150/317 (47%), Gaps = 29/317 (9%)

Query: 110 NVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           ++L + LV+A     A      T   G + + ++    +  L ++  I+EA     K+  
Sbjct: 3   SILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKITA 62

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVL 226
            G   +I T+N+                          L+   C  G++ E  +LLR+++
Sbjct: 63  NGCTPTIATYNA--------------------------LLNGLCKMGRLEEAIDLLRKIV 96

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           ++G  P+   +  LI    +KK      +L   M +R  A D   Y  +I GL ++ K  
Sbjct: 97  DNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIP 156

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  V+  +  +G VPD V  +T+I GLCK G +G A +++  M  +GL PNE  Y+++I
Sbjct: 157 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 216

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           HG C+   ++ A  +  +M        T+TYN LI GLC  G    A   F+EM + G  
Sbjct: 217 HGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCK 276

Query: 407 RDVITYNTLIQGYCKEG 423
            DV TYN LI G+CK G
Sbjct: 277 PDVYTYNILISGFCKAG 293



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 148/322 (45%), Gaps = 15/322 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQC 147
           + F+ + S  G + D V    L   L++A     A      + S G  P+  +L   I  
Sbjct: 125 KLFKEMASR-GLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDG 183

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------D 198
           LC++G I  A   F  ++  G+  +   +++ + G  K  + D   ++           D
Sbjct: 184 LCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPD 243

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            I    LI   C  G V+       ++LE G  P+   +N LIS FC+  N      +  
Sbjct: 244 TITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFD 303

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M +   +P+  TY  +I+GLCK R+  +A   +  +KERG  PD+ +Y++++ GLCK G
Sbjct: 304 DMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSG 363

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +   M F+ + +  + N  T   +I   C+ + ++EA  L   +  +G       YN
Sbjct: 364 KL-EGGCMLFDEMERSGVANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGMPHP-YAYN 421

Query: 379 TLIAGLCLHGRTDEAYHLFEEM 400
           ++I+ L   G+ +E   +++EM
Sbjct: 422 SIISALIKSGKVNEGQAVYQEM 443



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 158/360 (43%), Gaps = 14/360 (3%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGF 134
           ++L +   +  ++   + + ++ G +P + + N L + L +    + A+D L      G 
Sbjct: 42  DWLAKNKKIQEAVALMEKITAN-GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGC 100

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDL 191
           +P+  +    I  L +     EA+  F ++   G+      + + + G +   KI +   
Sbjct: 101 TPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASS 160

Query: 192 VWKLYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           V+K         D++    +I   C  G++     + + +   GL P    ++ LI   C
Sbjct: 161 VYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLC 220

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           + +      E+L  M      PD  TY  +I+GLCKS     A   F+++ E G  PD  
Sbjct: 221 KARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVY 280

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  +I G CK G    A  ++ +M      PN  TY ++I G C+   L +A   ++ M
Sbjct: 281 TYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHM 340

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++G    +  Y++L+ GLC  G+ +    LF+EM + G+     T   LI   CK  ++
Sbjct: 341 KERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGVANSQ-TRTRLIFHLCKANRV 399



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 54/155 (34%), Positives = 87/155 (56%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +INGL K+   ++A+ +  +    G   D   YTT++  L K   + +A  +  ++
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G  P   TYN++++G C++  LEEA  L ++++D G     VTY +LI GL    R+
Sbjct: 61  TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRS 120

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EAY LF+EMA +G+  D + Y  LI+G  + GKI
Sbjct: 121 FEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKI 155


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 175/350 (50%), Gaps = 17/350 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           + LH H      GF  + VS   L + L +    K A++ L   D      +       I
Sbjct: 157 KALHFHDKVLALGFQLNQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTII 216

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES-- 202
             +C+  L+ +AF  +S++    +  ++ T+N+ + G CI     D +  L+  ++E+  
Sbjct: 217 DGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENIN 276

Query: 203 ------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+ AFC +GKV E   +   +++  + P    +N L++ +C      +   +
Sbjct: 277 PTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESI 336

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            +TM     APD  +Y  +I+G CK +   EA ++F ++  +   PD V Y ++I GLCK
Sbjct: 337 FNTMAQIGVAPDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCK 396

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A K+  EM  +G  PN  TYNS++   C+  ++++A  L  ++ D     +  T
Sbjct: 397 SGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVCT 456

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YN LI GLC  GR  +A  +FE++   G   DV TYNT+I+G+CK+G ++
Sbjct: 457 YNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVI 506



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 180/397 (45%), Gaps = 22/397 (5%)

Query: 51  TRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHS----------HY 100
           +R++       +++ P+F F +P+F        ++   S   +  LH+            
Sbjct: 4   SRSRFVAFSVFITNFPNFQFLNPIFLIHCFTSYSSFSNSTTLYSQLHNLVSSFNHLLHQK 63

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
             +P ++    +  SLV+A  + + +     ++  G + N  +L + I C  + G    +
Sbjct: 64  NPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFSQLGHNSLS 123

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDR------TDLVWKLYHDLIESGY--LIQA 208
           F  FS + + G      T  + + G C+K D        D V  L   L +  Y  LI  
Sbjct: 124 FSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQVSYRTLING 183

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+     E+LR++    +  +   +N +I   C+ K      +    MVA+   P 
Sbjct: 184 LCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEMVAKRICPT 243

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I GLC   +  +A  + + +      P    ++ ++   CK G + +A+ ++ 
Sbjct: 244 VVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAFCKEGKVKEAKNVFV 303

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K + PN  TYNS+++GYC ++ + +A+ +   M   G      +Y+ +I+G C   
Sbjct: 304 VMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDVHSYSIMISGFCKIK 363

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             DEA  LFEEM  K IF DV+TYN+LI G CK G+I
Sbjct: 364 MVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRI 400



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/175 (26%), Positives = 85/175 (48%), Gaps = 1/175 (0%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           VS   H +  +N  P    + +++  L K+        +   ++  G   + V  + +I+
Sbjct: 53  VSSFNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILIN 112

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
              ++G    +  ++  ++ KG  P+  T  ++I G C   ++ +A   H ++L  G+  
Sbjct: 113 CFSQLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQL 172

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             V+Y TLI GLC  G+T  A  +   +  K +  DV+ YNT+I G CK+ K+VN
Sbjct: 173 NQVSYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKD-KLVN 226


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 100/328 (30%), Positives = 157/328 (47%), Gaps = 44/328 (13%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-- 199
           +L ++  CE    +EAF  F  +KE G+   I+T N  L   +K++R ++ W LY ++  
Sbjct: 161 DLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEMFR 220

Query: 200 --IES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             I S       ++   C +GK+ +  E +  +   G  P   ++N +I  +  + N   
Sbjct: 221 LRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEG 280

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +L  M  +   PD++TY  +I+G+CK  +  EA  +F+ + E G VP+ V Y T+I 
Sbjct: 281 ARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLID 340

Query: 313 GLCKMGWL-----------------------------------GDARKMWFEMIHKGLLP 337
           G C  G L                                   G+A  M  EM  KG++P
Sbjct: 341 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 400

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN +I+GY R  N ++A  LH EML KG   T VTY +LI  L    R  EA  LF
Sbjct: 401 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 460

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E++  +G+  DVI +N ++ G+C  G +
Sbjct: 461 EKILDQGVSPDVIMFNAMVDGHCANGNV 488



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 163/338 (48%), Gaps = 29/338 (8%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           R F       GF P++VS N +   + S       +  +D +   G  P+  +    I  
Sbjct: 247 REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISG 306

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           +C+ G +EEA   F K+ E+G+  +  T+N+                          LI 
Sbjct: 307 MCKEGRLEEASGLFDKMVEIGLVPNAVTYNT--------------------------LID 340

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +CN G +   +    ++++ G++P  + +N L+     +   G   +++  M  +   P
Sbjct: 341 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 400

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +ING  +     +A+ + N++  +G  P  V YT++I+ L +   + +A  ++
Sbjct: 401 DAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 460

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++ +G+ P+   +N+M+ G+C   N+E A  L KEM  K      VT+NTL+ G C  
Sbjct: 461 EKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 520

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+ +EA  L +EM ++GI  D I+YNTLI GY + G I
Sbjct: 521 GKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDI 558



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 136/296 (45%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L D        + A  + D     G  P+ ++  L +  L   G + EA
Sbjct: 327 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 386

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++++ G+     T+N  + G  +       + L+++++  G          LI  
Sbjct: 387 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYV 446

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                ++ E  +L  ++L+ G+ P+   FN ++   C   N  R   LL  M  ++  PD
Sbjct: 447 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPD 506

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++ G C+  K  EA  + +++K RG  PD + Y T+I G  + G + DA ++  
Sbjct: 507 EVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRD 566

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           EM+  G  P   TYN++I   C+    + A+ L KEM++KG      TY +LI G+
Sbjct: 567 EMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 101/202 (50%), Gaps = 37/202 (18%)

Query: 261 VARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---------------- 302
           ++R+R     +  ++ ++   C+ R+  EA++ F  +KE+G VP                
Sbjct: 147 LSRDRLSVKSSIVFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLN 206

Query: 303 -----------------DTVMYT--TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
                             + +YT   +++ LCK G L  AR+    M   G  PN  +YN
Sbjct: 207 RMEMAWVLYAEMFRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYN 266

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++IHGY    N+E A+R+   M  KG    + TY +LI+G+C  GR +EA  LF++M + 
Sbjct: 267 TIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 326

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           G+  + +TYNTLI GYC +G +
Sbjct: 327 GLVPNAVTYNTLIDGYCNKGDL 348


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 164/344 (47%), Gaps = 24/344 (6%)

Query: 105 DLVSCNVL-----FDSLVEA--------RAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           +++SC VL     + +L+E          AF V   F+ S     +  +  + I  L  +
Sbjct: 546 EMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSV-FRFILSRRVLQDVQTYSVLIHGLSRN 604

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIES 202
           G + EAF  FS+L+E G+  +  T+NS + G  K    D   +L           D++  
Sbjct: 605 GKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTY 664

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI   C  G++     L   +   GL P    +  ++  +C+ KN     +LL  M+ 
Sbjct: 665 NILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLL 724

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R   PD F Y  ++N  CK  K  +A  +F ++ E+G+   TV + T+I G CK G L +
Sbjct: 725 RGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKSGKLQE 783

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  EMI K  +PN  TY S+I   C+   + EAKRL  EM ++    T  TY +L+ 
Sbjct: 784 ANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLH 843

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G    G   E   LFEEM  KGI  D +TY  +I  YC+EG ++
Sbjct: 844 GYHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVM 887



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/336 (30%), Positives = 174/336 (51%), Gaps = 15/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA----MDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+   N L     +A+  + A    M+ L+     PN ++   +I    ++G +E 
Sbjct: 481 GILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERR-LRPNAHTYGAFIDGYSKAGEMEI 539

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIK---------IDRTDLVWKLYHDLIESGYLIQ 207
           A   F+++   GV  ++  + + + G  K         + R  L  ++  D+     LI 
Sbjct: 540 ADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIH 599

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               +GK+ E + +  ++ E GL+P    +N LIS  C++ N  + S+LL  M  +   P
Sbjct: 600 GLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINP 659

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+GLCK+ +   A  +F+D++ RG  P+ V Y  ++ G CK      A ++ 
Sbjct: 660 DIVTYNILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 719

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ +G+ P+ + YN +++  C+ +  E+A  L +EML+KG+  +TV++NTLI G C  
Sbjct: 720 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFA-STVSFNTLIEGYCKS 778

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+  EA HL EEM +K    + +TY +LI   CK G
Sbjct: 779 GKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAG 814



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 166/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   +L+  N L + + +A   + A++ +      G  P+  +  L I+  C    +  A
Sbjct: 341 GIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARA 400

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F    ++K+  +  ++ T++  + G  +         +  +++ +G          L+ A
Sbjct: 401 FELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTA 460

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G+V E   +L ++ E G++P+   +N LI  FC+ K        L  M+ R   P+
Sbjct: 461 HAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPN 520

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY   I+G  K+ +   A R FN++   G +P+  +YT +I G CK G + +A  ++ 
Sbjct: 521 AHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCKEGNVTEAFSVFR 580

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ + +L +  TY+ +IHG  R   + EA  +  E+ +KG      TYN+LI+G C  G
Sbjct: 581 FILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQG 640

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D+A  L EEM  KGI  D++TYN LI G CK G+I
Sbjct: 641 NVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEI 677



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 166/350 (47%), Gaps = 19/350 (5%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV---AMDFLDSTGFS 135
           FL +  NV L  + F+       F P L+SCN L   L++    ++     D + +    
Sbjct: 169 FLVEAVNVFLGPKNFE-------FRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVL 221

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    I   C+ G +++A      L EMG    +      L   I++ R+ +   L
Sbjct: 222 PDVYTYTNMISAHCKVGNVKDAK---RVLLEMGEKARL------LDEAIELKRSMVDKGL 272

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             DL     LI  FC + +  E   +L ++++ GL PE   +N LI  F  + +  +   
Sbjct: 273 VPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFR 332

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   MVA     +   +  ++NG+CK+ K  +A  +  ++ E+G  PD+  Y+ +I G C
Sbjct: 333 IKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHC 392

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           +   +  A ++  EM  + L P   TY+ +I+G CR  NL+    + +EM+  G     V
Sbjct: 393 RGQNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAV 452

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            Y TL+      GR +E+  + E M ++GI  DV  YN+LI G+CK  ++
Sbjct: 453 VYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRM 502



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 80/301 (26%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN       +    + G +EE+     +++E G+   +  +NS ++G  K  R +  
Sbjct: 446 GLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEA 505

Query: 193 WKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
                +++E          G  I  +   G++        ++L  G++P    +  LI  
Sbjct: 506 RTYLMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEG 565

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C++ N      +   +++R    D  TY  +I+GL ++ K  EA+ +F++L+E+G +P+
Sbjct: 566 HCKEGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPN 625

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y ++I G CK G +  A ++  EM  KG+ P+  TYN +I G C+   +E AK L  
Sbjct: 626 AFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFD 685

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++  +G     VTY  ++ G C       A+ L EEM  +G+  D   YN ++   CKE 
Sbjct: 686 DIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEE 745

Query: 424 K 424
           K
Sbjct: 746 K 746



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 173/371 (46%), Gaps = 28/371 (7%)

Query: 82  QQNNVLLSIRFFQWLHSH-YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNS 140
           QQ+  +LS       +S+ YG + DL+ C ++ +S          +    S   SPN   
Sbjct: 98  QQDLDVLSALAVNLCNSNWYGPASDLIKC-IIRNSDSPLAVLGSIVKCYRSCNGSPNSVI 156

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---- 196
            ++ +    + G + EA   F   K      S+ + NS L   +K ++ +L WK++    
Sbjct: 157 FDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMC 216

Query: 197 -HDLIESGY----LIQAFCNDGKV-----------------SEGYELLRQVLEDGLVPEN 234
            H ++   Y    +I A C  G V                  E  EL R +++ GLVP+ 
Sbjct: 217 AHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKGLVPDL 276

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             ++ LI+ FC +K       +L  M+     P+  TY  +I+G  +     +A+R+ ++
Sbjct: 277 YTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDE 336

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G   + +++ T+++G+CK G +  A ++  EM+ KG+ P+  TY+ +I G+CR  N
Sbjct: 337 MVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQN 396

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +  A  L  EM  +    T +TY+ +I GLC  G       +  EM   G+  + + Y T
Sbjct: 397 MARAFELLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTT 456

Query: 415 LIQGYCKEGKI 425
           L+  + KEG++
Sbjct: 457 LMTAHAKEGRV 467


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 171/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N + + +  +    +A+D L   +      +  +    I  LC  G I+ A
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR--------TDLVWK-LYHDLIESGYLIQA 208
              F +++  G+  S+ T+NS + G  K  +         D+V + +  ++I    L+  
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ E  EL ++++  G+ P    +N L+  +C +      + +L  MV    +PD
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I G C  ++  +  +VF ++ +RG V + V Y+ ++ G C+ G +  A +++ 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+LP+  TY  ++ G C    LE+A  + +++         V Y T+I G+C  G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A++LF  +  KG+  +V+TY  +I G CK+G +
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 159/335 (47%), Gaps = 30/335 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +I  FQ +       P LV  +  F ++   + F + +DF   L+  G + N  +L + I
Sbjct: 72  AIALFQEMIRSRPL-PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
            C C       A+    K+ ++G      T+N+                          L
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNT--------------------------L 164

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+    +GKVSE   L+ +++E+G  P+   +N +++  C   +     +LL  M  RN 
Sbjct: 165 IKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNV 224

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D FTY  +I+ LC+      A  +F +++ +G     V Y +++ GLCK G   D   
Sbjct: 225 KADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGAL 284

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M+ + ++PN  T+N ++  + +   L+EA  L+KEM+ +G     +TYNTL+ G C
Sbjct: 285 LLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYC 344

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  R  EA ++ + M +     D++T+ +LI+GYC
Sbjct: 345 MQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYC 379



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-SRFCEKKNFGRV 253
           + H++     +I  FC   K    Y +L +V++ G  P+ T FN LI   F E    G+V
Sbjct: 119 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE----GKV 174

Query: 254 SE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
           SE   L+  MV     PD  TY  ++NG+C+S     A  +   ++ER    D   Y+T+
Sbjct: 175 SEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI 234

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I  LC+ G +  A  ++ EM  KG+  +  TYNS++ G C+     +   L K+M+ +  
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               +T+N L+      G+  EA  L++EM  +GI  ++ITYNTL+ GYC + ++
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 13/341 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +I  F+ + +  G    +V+ N L   L +A  +      L    S    PN  +  + +
Sbjct: 247 AISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-------DLVW--KLY 196
               + G ++EA   + ++   G+  +I T+N+ + G    +R        DL+   K  
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    LI+ +C   +V +G ++ R + + GLV     ++ L+  FC+        EL
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              MV+    PD  TY  +++GLC + K  +A  +F DL++       VMYTT+I G+CK
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + DA  ++  +  KG+ PN  TY  MI G C+  +L EA  L ++M + G      T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           YNTLI      G    +  L EEM   G   D  +   +I 
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 106/213 (49%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K  +   L ++++    +P    F++  S     K F  V +    +     A + +T
Sbjct: 66  DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +IN  C+  K   AY V   + + GY PDT  + T+I GL   G + +A  +   M+
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  TYNS+++G CR  +   A  L ++M ++       TY+T+I  LC  G  D
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            A  LF+EM  KGI   V+TYN+L++G CK GK
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 30/208 (14%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
           Q   + L+   FQ + SH G  PD+++  +L D L +    + A++  +    S     +
Sbjct: 415 QSGKIKLAEELFQEMVSH-GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473

Query: 142 ELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +Y   I+ +C+ G +E+A+  F  L   GV  ++ T+                      
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT--------------------- 512

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I   C  G +SE   LLR++ EDG  P +  +N LI       +    ++L+ 
Sbjct: 513 -----VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRL 286
            M +   + D  + + VI+ L  + KRL
Sbjct: 568 EMKSCGFSADASSIKMVIDMLLSAMKRL 595



 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  ++ EMI    LP+   ++       R           K++   G      T N +I
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C   +T  AY +  ++ + G   D  T+NTLI+G   EGK+
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKV 174


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 167/347 (48%), Gaps = 14/347 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLELYIQC 147
             + L +  GF PD    N+  ++LVE    K+ ++ L S     G   + ++  + I+ 
Sbjct: 109 LLKILENELGFKPDTNFYNIALNALVEDNKLKL-VEMLHSKMVNEGIVLDVSTFNVLIKA 167

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
           LC++  +  A     ++   G+     T+ + + G I+    +   K+   ++  G    
Sbjct: 168 LCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLT 227

Query: 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+  FC +G+V E    + +V E+G  P+   FN L++ FC   N     +++ 
Sbjct: 228 NVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVD 287

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ +   PD +TY  +I+G+CK  +  +A  +   +  R   P+TV Y T+I  LCK  
Sbjct: 288 FMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKEN 347

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A  +   ++ KGLLP+  T+N++I G C   N + A  + +EM +KG      TY+
Sbjct: 348 EIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYS 407

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LI  LC   R  EA  L +EM   G  R+ + YNTLI G CK  +I
Sbjct: 408 ILIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRI 454



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/354 (30%), Positives = 171/354 (48%), Gaps = 21/354 (5%)

Query: 90  IRFFQWLHSHY---GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLEL 143
           ++  + LHS     G   D+ + NVL  +L +A   + A+  L+     G  P+  +   
Sbjct: 139 LKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTT 198

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL---GCIKIDRTDLVWKLYHDLI 200
            +Q   E G +  A       K+M  +G + T  S  +   G  K  R +   +   ++ 
Sbjct: 199 LMQGFIEEGDLNGAL---KMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEEALRFVLEVS 255

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           E G+         L+  FC  G V++  +++  ++E G  P+   +N LIS  C+   F 
Sbjct: 256 EEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFE 315

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  E+L  M+ R  +P+  TY  +I+ LCK  +   A  +   L  +G +PD   + T+I
Sbjct: 316 KAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLI 375

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLC       A +M+ EM +KG  P+E+TY+ +I   C    L+EA  L KEM   G  
Sbjct: 376 QGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGCA 435

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              V YNTLI GLC   R ++A  +F++M   G+ R  +TYNTLI G CK  ++
Sbjct: 436 RNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRV 489



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 158/331 (47%), Gaps = 12/331 (3%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           VS  VL +   +    + A+ F+      GFSP+  +    +   C  G + +A      
Sbjct: 229 VSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDF 288

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI---------ESGYLIQAFCNDGK 214
           + E G    + T+NS + G  K+   +   ++   +I             LI A C + +
Sbjct: 289 MIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENE 348

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           +    +L R ++  GL+P+   FN LI   C  KN     E+   M  +   PD FTY  
Sbjct: 349 IEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSI 408

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+ LC  R+  EA  +  +++  G   + V+Y T+I GLCK   + DA +++ +M   G
Sbjct: 409 LIDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLG 468

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +  +  TYN++I G C+   +EEA +L  +M+ +G      TYN+L+   C  G  ++A 
Sbjct: 469 VSRSSVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAG 528

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + + MA  G   D+ TY TLI G C+ G++
Sbjct: 529 DIVQTMASNGCEPDIFTYGTLIGGLCRAGRV 559



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 158/342 (46%), Gaps = 13/342 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++RF   + S  GFSPD V+ N L +          A+D +D     GF P+  +    I
Sbjct: 247 ALRFVLEV-SEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLI 305

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             +C+ G  E+A     ++       +  T+N+ +    K +  +    L   L+  G L
Sbjct: 306 SGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLL 365

Query: 206 ---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                    IQ  C         E+  ++   G  P+   ++ LI   C ++       L
Sbjct: 366 PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALML 425

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M +   A +   Y  +I+GLCKSR+  +A  +F+ ++  G    +V Y T+I GLCK
Sbjct: 426 LKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCK 485

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A ++  +MI +GL P+++TYNS++  +CR+ ++E+A  + + M   G      T
Sbjct: 486 NKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFT 545

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           Y TLI GLC  GR D A  L   +  KGI      YN +IQ 
Sbjct: 546 YGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQA 587



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 150/335 (44%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLCESGLIEEA 157
           GF PD+ + N L   + +   F+ A++ L        SPN  +    I  LC+   IE A
Sbjct: 293 GFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAA 352

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G+   + T+N+ + G       D+  +++ ++   G          LI +
Sbjct: 353 TDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDS 412

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C + ++ E   LL+++   G       +N LI   C+ +      E+   M     +  
Sbjct: 413 LCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRS 472

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GLCK+++  EA ++ + +   G  PD   Y +++   C++G +  A  +  
Sbjct: 473 SVTYNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQ 532

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  P+ +TY ++I G CR   ++ A +L + +  KG   T   YN +I  L +  
Sbjct: 533 TMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRK 592

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           RT E   LF EM +K    D +T+  + +G C  G
Sbjct: 593 RTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGG 627



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 141/304 (46%), Gaps = 12/304 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ST   P P +  L +Q L +S   +       +LK  G   +  T+ + +         +
Sbjct: 49  STTHHPLPPNETLLLQ-LTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIE 107

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
            + K+  +  E G+          + A   D K+     L  +++ +G+V + + FN LI
Sbjct: 108 NLLKILEN--ELGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLI 165

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+         +L  M      PD  T+  ++ G  +      A ++   +   G +
Sbjct: 166 KALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCL 225

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
              V    +++G CK G + +A +   E+  +G  P++ T+NS+++G+CRI N+ +A  +
Sbjct: 226 LTNVSVKVLVNGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDI 285

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              M++KG+     TYN+LI+G+C  G  ++A  + ++M  +    + +TYNTLI   CK
Sbjct: 286 VDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCK 345

Query: 422 EGKI 425
           E +I
Sbjct: 346 ENEI 349



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 185/420 (44%), Gaps = 48/420 (11%)

Query: 8   VLTILRQNPRNFQNPNTQLRN--LSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDI 65
            + IL+Q      +PNT   N  +S   KE++    E A  + +I  +K      LL D+
Sbjct: 317 AIEILQQMILRECSPNTVTYNTLISALCKENE---IEAATDLARILVSK-----GLLPDV 368

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA 125
            +FN        + L    N  +++  F+ + +  G  PD  + ++L DSL   R  K A
Sbjct: 369 CTFNT-----LIQGLCLSKNQDIAMEMFEEMKNK-GCKPDEFTYSILIDSLCYERRLKEA 422

Query: 126 MDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           +  L   +S+G + N       I  LC+S  IE+A   F +++ +GV  S  T+N+    
Sbjct: 423 LMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNT---- 478

Query: 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
                                 LI   C + +V E  +L+ Q++ +GL P+   +N L++
Sbjct: 479 ----------------------LIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLT 516

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC   +  +  +++ TM +    PD FTY  +I GLC++ +   A ++   ++ +G V 
Sbjct: 517 YFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVL 576

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRL 361
               Y  VI  L       +  +++ EM+ K   P+  T+  +  G C     ++EA   
Sbjct: 577 TPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDF 636

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             EML+KG      ++  L  GLC     D    L   + +K    +  T  ++I+G+ K
Sbjct: 637 TVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMSERET--SMIRGFLK 694



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/207 (21%), Positives = 81/207 (39%), Gaps = 22/207 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N L          + A D +    S G  P+  +    I  LC +G ++ A
Sbjct: 503 GLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGTLIGGLCRAGRVDVA 562

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 ++  G+  +   +N  +       RT    +L+ +++E            + + 
Sbjct: 563 SKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREMMEKSDPPDALTHKIVFRG 622

Query: 209 FCNDG-KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            CN G  + E  +   ++LE G++PE  +F  L    C       + EL++ ++ + +  
Sbjct: 623 LCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIELINMVMEKAQMS 682

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFND 294
           +  T   +I G  K RK       FND
Sbjct: 683 ERET--SMIRGFLKIRK-------FND 700


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 175/360 (48%), Gaps = 18/360 (5%)

Query: 85  NVLLSIRFFQW-LH-----SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFS 135
           N L+ IR F+  LH        G  PD+     +  SL E + F  A +    ++S+G  
Sbjct: 188 NGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCD 247

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
            +  +  ++I+ LC++  + EA    + L   G+   + T+ + +LG  K++  +   ++
Sbjct: 248 LSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEM 307

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            +++IE G+         L+      G +   ++L+ +V + G+ P    +N LI+  C+
Sbjct: 308 MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCK 367

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    L + M  +   P++ TY  +I+  CK  K   A      + E G       
Sbjct: 368 DGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+++I G CK+G L  A+ ++ EMI  GL PN   Y S+I GYC+   L  A RL+ EM 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            KG    T T+  LI+GLC   R  EA  LF EM +  +  + +TYN LI+G+CKEG  V
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547



 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 179/395 (45%), Gaps = 38/395 (9%)

Query: 39  LYTEIAKQVCKI-----TRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFF 93
           +YT + + +C++      R      ++   D+    +N  +F R   K Q  V  ++   
Sbjct: 217 VYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYN--VFIRGLCKNQR-VWEAVEIK 273

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCE 150
             L S+ G   D+ +   L   L +   F+   + ++     GF P+  ++   +  L +
Sbjct: 274 NLL-SYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRK 332

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC 210
            G I  AF   +K+K+ GV  S+  +N+                          LI + C
Sbjct: 333 KGNIGSAFDLVNKVKKFGVAPSLFVYNA--------------------------LINSMC 366

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            DGK+ E   L   +   GL P +  ++ LI  FC++         L  M         +
Sbjct: 367 KDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVY 426

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  +I+G CK  K   A  +F+++   G  P+ V+YT++I G CK G L +A +++ EM
Sbjct: 427 PYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEM 486

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG+ PN YT+ ++I G C  + + EA +L  EM++       VTYN LI G C  G T
Sbjct: 487 TGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNT 546

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             A+ L +EM +KG+  D  TY  LI G C  G++
Sbjct: 547 VRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRV 581



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 169/381 (44%), Gaps = 54/381 (14%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIE 155
           H G  P+ V+ ++L DS  +     VA+ FL      G           I   C+ G + 
Sbjct: 383 HKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLR 442

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A   F ++   G+  ++  + S + G  K       ++LYH++   G          LI
Sbjct: 443 AAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALI 502

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C+  +++E  +L  +++E  ++P    +N LI   C++ N  R  ELL  MV +   
Sbjct: 503 SGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLV 562

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKER--------GYVPDTVMYTTVIHGLCKMG 318
           PD +TY  +I+GLC + +  EA    NDL+          G +P+ V YT +I+GLCK+G
Sbjct: 563 PDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIG 622

Query: 319 WLGDARKMWFEMIHKGLLPNE----------------------------------YTYNS 344
            +  A  +  EM+    LPN+                                   TYN 
Sbjct: 623 LMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNI 682

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G+C++  ++EA  +   M+D G     ++Y+T+I   C  G   EA  L+E M  +G
Sbjct: 683 LIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRG 742

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  D + YN LI G C  G++
Sbjct: 743 VNPDTVAYNFLIYGCCVTGEL 763



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 162/356 (45%), Gaps = 51/356 (14%)

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           L + RA K   D + + G  PN       I   C+ G +  AF  + ++   G+  +  T
Sbjct: 438 LGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYT 497

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIE---------SGYLIQAFCNDGKVSEGYELLRQVL 226
           + + + G    +R     KL+ +++E            LI+  C +G     +ELL +++
Sbjct: 498 FTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMV 557

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--------PDNFTYEEVING 278
           E GLVP+   +  LIS  C         E ++ +    +         P+  TY  +ING
Sbjct: 558 EKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALING 617

Query: 279 LCK----------------------------------SRKRLEAYRVFNDLKERGYVPDT 304
           LCK                                  S   +E     +D+   G++ +T
Sbjct: 618 LCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANT 677

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V Y  +I G CK+G + +A ++   MI  G+ P+  +Y+++I+ YCR  +L+EA +L + 
Sbjct: 678 VTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWES 737

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           ML++G    TV YN LI G C+ G   +A+ L ++M ++G+  +  TYN+LI G C
Sbjct: 738 MLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTC 793



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 150/330 (45%), Gaps = 29/330 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + + + + + L+  R F++A+   D   S+G  P+       ++ LCE      A
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRA 234

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                +++  G   S+ T+N                            I+  C + +V E
Sbjct: 235 REVIGRMESSGCDLSVATYN--------------------------VFIRGLCKNQRVWE 268

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E+   +   GL  +   +  L+   C+ + F    E+++ M+     P       +++
Sbjct: 269 AVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVD 328

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GL K      A+ + N +K+ G  P   +Y  +I+ +CK G L +A  ++  M HKGL P
Sbjct: 329 GLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFP 388

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N+ TY+ +I  +C+   L+ A     +M + G   T   Y++LI+G C  G+   A  LF
Sbjct: 389 NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLF 448

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +EM   G+  +V+ Y +LI GYCKEG++ N
Sbjct: 449 DEMIANGLKPNVVIYTSLISGYCKEGELHN 478



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 148/357 (41%), Gaps = 64/357 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEA--------RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
           G  P++V    ++ SL+           AF++  + +   G SPN  +    I  LC + 
Sbjct: 455 GLKPNVV----IYTSLISGYCKEGELHNAFRLYHE-MTGKGISPNTYTFTALISGLCHAN 509

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            + EA   F ++ E  V  +  T+N  + G  K   T   ++L  +++E G         
Sbjct: 510 RMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYR 569

Query: 205 -LIQAFCNDGKVSEGYELL------RQVLED--GLVPENTAFNKLISRFCEKKNFGRVSE 255
            LI   C+ G+VSE  E +      +Q L +  G +P    +  LI+  C+     +   
Sbjct: 570 PLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAEL 629

Query: 256 LLHTMVARNRAPD----------------------------------NFTYEEVINGLCK 281
           L   M+A N  P+                                    TY  +I G CK
Sbjct: 630 LCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCK 689

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
             +  EA  V  ++ + G  PD + Y+T+I+  C+ G L +A K+W  M+++G+ P+   
Sbjct: 690 LGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVA 749

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           YN +I+G C    L +A  L  +M+ +G      TYN+LI G CL          F 
Sbjct: 750 YNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYFS 806



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 107/221 (48%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LIQ +  + +  +G  ++R +++ G++P+    + +++     + F     L   +V+  
Sbjct: 151 LIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG 210

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD + Y  V+  LC+ +  + A  V   ++  G       Y   I GLCK   + +A 
Sbjct: 211 LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAV 270

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   + +KGL  +  TY +++ G C+++  E  + +  EM++ G+  +    + L+ GL
Sbjct: 271 EIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGL 330

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G    A+ L  ++ + G+   +  YN LI   CK+GK+
Sbjct: 331 RKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%)

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           ++ +I    ++R+ L+   V   + + G +P     + V++GL ++     A  ++ E++
Sbjct: 148 FDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIV 207

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GL P+ Y Y +++   C + +   A+ +   M   G   +  TYN  I GLC + R  
Sbjct: 208 SSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVW 267

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           EA  +   ++ KG+  DV TY TL+ G CK
Sbjct: 268 EAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 170/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + +  +L +A+A   AM+ L++    G  P+  +    +   C SG  +EA
Sbjct: 231 GILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEA 290

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K++  GV  ++ T++S +    K  R+    K++  + + G          L+Q 
Sbjct: 291 IGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 350

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + E + LL  ++ +G+ P++  FN LI  + +++   +   +   M      P+
Sbjct: 351 YATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPN 410

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  VI+ LCKS    +A   F  + + G  P+ ++YT++IHGLC       A ++  
Sbjct: 411 VVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELIL 470

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G+  N   +NS+I  +C+   + E+++L   M+  G     +TYNTLI G CL G
Sbjct: 471 EMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAG 530

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA  L   M   G+  D++TY TLI GYC+  ++
Sbjct: 531 KMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRM 567



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 117/410 (28%), Positives = 194/410 (47%), Gaps = 31/410 (7%)

Query: 40  YTEIAKQVCKITRTKPRWEQTL-----LSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +  L     L  IP  F++N+ L   + L  +N    ++   
Sbjct: 130 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLL---KGLCDENRSQEALELL 186

Query: 94  QWLHSHYGFS--PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
             +    G    PD+VS N + +   +     +A+    + LD  G  P+  +    I  
Sbjct: 187 HMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDR-GILPDVVTYSSIIAA 245

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL------------LGCIKIDRTDLVWKL 195
           LC++  +++A    + + + GV     T+NS L            +G +K  R+D V   
Sbjct: 246 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEP- 304

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             +++    L+   C +G+ +E  ++   + + GL P+   +  L+  +  K     +  
Sbjct: 305 --NVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHA 362

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV     PD+  +  +I    K  K  +A  VF+ +++ G  P+ V Y TVI  LC
Sbjct: 363 LLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLC 422

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + DA   + +MI +GL PN   Y S+IHG C  D  ++A+ L  EMLD+G    T+
Sbjct: 423 KSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTI 482

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +N++I   C  GR  E+  LF+ M + G+  D+ITYNTLI G C  GK+
Sbjct: 483 FFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKM 532



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 150/272 (55%), Gaps = 15/272 (5%)

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
           V  ++ T+   +  C +  R DL +    ++++ G+         L++  C D + S+  
Sbjct: 88  VTPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAM 147

Query: 220 EL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA----PDNFTYEE 274
           ++ LR++ E G +P+  ++N L+   C++       ELLH M+A +R     PD  +Y  
Sbjct: 148 DIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLH-MMADDRGGGSPPDVVSYNT 206

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           V+NG  K     +AY  ++++ +RG +PD V Y+++I  LCK   +  A ++   M+  G
Sbjct: 207 VLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNG 266

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           ++P+  TYNS++HGYC     +EA    K+M   G     VTY++L+  LC +GR+ EA 
Sbjct: 267 VMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEAR 326

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +F+ M ++G+  D+ TY TL+QGY  +G +V
Sbjct: 327 KIFDSMTKRGLEPDIATYRTLLQGYATKGALV 358



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 148/327 (45%), Gaps = 35/327 (10%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ +   L        +LVE  A    +D +   G  P+ +   + I    +   +
Sbjct: 336 GLEPDIATYRTLLQGYATKGALVEMHAL---LDLMVRNGIQPDHHVFNILICAYAKQEKV 392

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           ++A   FSK+++ G+  ++  +                          G +I   C  G 
Sbjct: 393 DQAMLVFSKMRQHGLNPNVVCY--------------------------GTVIDVLCKSGS 426

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V +      Q++++GL P    +  LI   C    + +  EL+  M+ R    +   +  
Sbjct: 427 VDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+  CK  + +E+ ++F+ +   G  PD + Y T+I G C  G + +A K+   M+  G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P+  TY ++I+GYCR+  +++A  L KEM+  G     +TYN ++ GL    RT  A 
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAK 606

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+  + + G   ++ TYN ++ G CK
Sbjct: 607 ELYVSITKSGTQLELSTYNIILHGLCK 633



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 155/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD    N+L  +  +      AM     +   G +PN       I  LC+SG +++A
Sbjct: 371 GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDA 430

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+  +I  + S + G    D+ D   +L  ++++ G          +I +
Sbjct: 431 MLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNTIFFNSIIDS 490

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V E  +L   ++  G+ P+   +N LI   C        ++LL +MV+    PD
Sbjct: 491 HCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPD 550

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C+  +  +A  +F ++   G  P+ + Y  ++ GL        A++++ 
Sbjct: 551 IVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 610

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +   G      TYN ++HG C+ +  +EA R+ + +        T T+N +I  L   G
Sbjct: 611 SITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCG 670

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R DEA  LF   +  G+  DV TY+ + +   ++G +
Sbjct: 671 RMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSL 707



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 87/377 (23%), Positives = 165/377 (43%), Gaps = 51/377 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D ++   L   L   +    AMD     +   G  P+  S    ++ LC+    +E
Sbjct: 122 GFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQE 181

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------- 205
           A      + +    GS   + ++N+ L G  K   +D  +  YH++++ G L        
Sbjct: 182 ALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHEMLDRGILPDVVTYSS 241

Query: 206 -IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I A C    + +  E+L  ++++G++P+   +N ++  +C           L  M +  
Sbjct: 242 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG 301

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  ++N LCK+ +  EA ++F+ + +RG  PD   Y T++ G    G L +  
Sbjct: 302 VEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMH 361

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGY----------------------------------- 349
            +   M+  G+ P+ + +N +I  Y                                   
Sbjct: 362 ALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVL 421

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+  ++++A    ++M+D+G     + Y +LI GLC   + D+A  L  EM  +GI  + 
Sbjct: 422 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRGICLNT 481

Query: 410 ITYNTLIQGYCKEGKIV 426
           I +N++I  +CKEG+++
Sbjct: 482 IFFNSIIDSHCKEGRVI 498



 Score = 44.7 bits (104), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT---YN 378
           DAR ++ E++ +G   + Y  N  +    R        R ++ M   G G+ T T   Y 
Sbjct: 38  DARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSRYNR-MARAGAGKVTPTVHTYA 96

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            LI   C  GR D  +     + +KG   D IT+  L++G C + +
Sbjct: 97  ILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKR 142


>gi|300681579|emb|CBI75523.1| PPR repeat domain containing protein [Triticum aestivum]
          Length = 728

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 159/333 (47%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+ S ++L D L +          L      G +PN  S    +  LC +G +E A
Sbjct: 313 GFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELA 372

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F  F +LK+ G       ++  L GC +    ++ + L++D++   +         LI A
Sbjct: 373 FELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYA 432

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ E  E+   ++ DG+ P       L+  F  +   G     L  +      P 
Sbjct: 433 YCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQFGVVPS 492

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK  K  + + +F D+ +RGYVPDTV+Y+ +I G  K   L +A ++++
Sbjct: 493 LCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQEAFRLYY 552

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G  PN +TY S+I+G C  D L E   L K M+ +G     + Y +LIA  C   
Sbjct: 553 KMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRS 612

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
               A  +F EM  +G+  D   Y  LI G+ K
Sbjct: 613 NMKAALEIFREMETEGLSADSFVYTCLIGGFSK 645



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 148/308 (48%), Gaps = 9/308 (2%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   GF P+ +S  + +  LC+ G +   +    ++   G+  ++ +++S L G  + 
Sbjct: 307 DGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRA 366

Query: 187 DRTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            R +L ++L+         HD I    ++   C    +   Y+L   ++    VP+   +
Sbjct: 367 GRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNY 426

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           + LI  +C  +      E+   MV+    P+  T   +++G        EA+   + +++
Sbjct: 427 SSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLFLDKVRQ 486

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G VP    Y  +IHGLCK+    D   ++ +MI +G +P+   Y+ +I G+ +  +L+E
Sbjct: 487 FGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVKALDLQE 546

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A RL+ +M+D+G      TY +LI GLC   +  E   LF+ M  +G+  D I Y +LI 
Sbjct: 547 AFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIA 606

Query: 418 GYCKEGKI 425
            YCK   +
Sbjct: 607 CYCKRSNM 614



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 152/334 (45%), Gaps = 14/334 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           +L  CN L   LVE      A    D   S+G SPN  S  + +        +       
Sbjct: 175 ELQVCNFLLKRLVEGNQIMYARSLFDDMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALE 234

Query: 162 SKLKEM--GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
              +    GV  +  T+ + L G     +    W     L + GY         +I  FC
Sbjct: 235 LLSEMEVEGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFC 294

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           +DG+V +  E+   + + G VP+  +++ L+   C++ +      +L  M      P+  
Sbjct: 295 HDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLTGYYMLVEMARNGITPNLV 354

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +Y  +++GLC++ +   A+ +F  LK++G+  D ++Y+ V+HG C+   L     +W +M
Sbjct: 355 SYSSLLHGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDM 414

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +H   +P+ Y Y+S+I+ YCR   L+EA  + + M+  G     VT   L+ G    G  
Sbjct: 415 VHHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLI 474

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            EA+   +++ Q G+   + TY  +I G CK  K
Sbjct: 475 GEAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNK 508



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 84/313 (26%), Positives = 144/313 (46%), Gaps = 29/313 (9%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H+ F PD  + + L  +    R  K A++  +   S G  PN  +  + +      GLI 
Sbjct: 416 HHNFVPDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIG 475

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EAF    K+++ GV  S+ T+   + G  K+++ + +W ++ D+I+ GY           
Sbjct: 476 EAFLFLDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGY----------- 524

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                          VP+   ++ +I  F +  +      L + MV     P+ FTY  +
Sbjct: 525 ---------------VPDTVLYSIIIDGFVKALDLQEAFRLYYKMVDEGTKPNIFTYTSL 569

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           INGLC   K  E   +F  +   G  PD ++YT++I   CK   +  A +++ EM  +GL
Sbjct: 570 INGLCHDDKLPEVMTLFKHMIGEGLAPDRILYTSLIACYCKRSNMKAALEIFREMETEGL 629

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             + + Y  +I G+ ++  ++ A+   +EM++KG   T VTY  LI G    G   +A  
Sbjct: 630 SADSFVYTCLIGGFSKVLAMDGAQLFMEEMMNKGLTPTVVTYTDLIVGYFKIGDEKKAMA 689

Query: 396 LFEEMAQKGIFRD 408
           ++  M Q GI  D
Sbjct: 690 MYNSMLQAGIAPD 702



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 152/339 (44%), Gaps = 16/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +       L  A+  K A +FL      G+  N       I   C  G + +A
Sbjct: 243 GVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKA 302

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----------DLIESGYLI 206
              F  +K+ G    + +++  + G  K  + D++   Y            +L+    L+
Sbjct: 303 IEVFDGMKKCGFVPDVHSYSILVDGLCK--QGDVLTGYYMLVEMARNGITPNLVSYSSLL 360

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G+V   +EL +++ + G   ++  ++ ++   C+  +     +L + MV  N  
Sbjct: 361 HGLCRAGRVELAFELFKRLKDQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFV 420

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD + Y  +I   C+ R+  EA  VF  +   G  P+ V  T ++HG    G +G+A   
Sbjct: 421 PDAYNYSSLIYAYCRHRQLKEALEVFELMVSDGICPNVVTCTILVHGFSNEGLIGEAFLF 480

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             ++   G++P+  TY  +IHG C+++   +   +  +M+ +GY   TV Y+ +I G   
Sbjct: 481 LDKVRQFGVVPSLCTYRVIIHGLCKVNKPNDMWGIFADMIKRGYVPDTVLYSIIIDGFVK 540

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                EA+ L+ +M  +G   ++ TY +LI G C + K+
Sbjct: 541 ALDLQEAFRLYYKMVDEGTKPNIFTYTSLINGLCHDDKL 579



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 132/299 (44%), Gaps = 13/299 (4%)

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
           P      I+   E  + E+A   + + K++GV   ++  N  L   ++ ++      L+ 
Sbjct: 143 PQVYATVIRVFVELSMFEDALVTYVEAKKVGV--ELQVCNFLLKRLVEGNQIMYARSLFD 200

Query: 198 DLIESG---------YLIQAFCNDGKVSEGYELLRQVLE--DGLVPENTAFNKLISRFCE 246
           D+  SG          L+  + +  K+     L        +G+ P    +   +   C 
Sbjct: 201 DMKSSGPSPNVYSYSVLMSMYTHGAKLCLEEALELLSEMEVEGVRPNAATYATYLYGLCH 260

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            K        L  +  R    +N+ +  VI+G C   +  +A  VF+ +K+ G+VPD   
Sbjct: 261 AKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGFCHDGQVHKAIEVFDGMKKCGFVPDVHS 320

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+ ++ GLCK G +     M  EM   G+ PN  +Y+S++HG CR   +E A  L K + 
Sbjct: 321 YSILVDGLCKQGDVLTGYYMLVEMARNGITPNLVSYSSLLHGLCRAGRVELAFELFKRLK 380

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D+G+    + Y+ ++ G C H   +  Y L+ +M       D   Y++LI  YC+  ++
Sbjct: 381 DQGFKHDHIVYSIVLHGCCQHLDLEICYDLWNDMVHHNFVPDAYNYSSLIYAYCRHRQL 439



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI----HGLCKMGWLGDAR 324
           NF  + ++ G     + + A  +F+D+K  G  P+   Y+ ++    HG  K+       
Sbjct: 180 NFLLKRLVEG----NQIMYARSLFDDMKSSGPSPNVYSYSVLMSMYTHG-AKLCLEEALE 234

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +    + +G+ PN  TY + ++G C    ++ A    + +  +GY      +N +I G 
Sbjct: 235 LLSEMEV-EGVRPNAATYATYLYGLCHAKQVKSAWNFLQMLCQRGYPCNNYCFNAVIHGF 293

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C  G+  +A  +F+ M + G   DV +Y+ L+ G CK+G ++ 
Sbjct: 294 CHDGQVHKAIEVFDGMKKCGFVPDVHSYSILVDGLCKQGDVLT 336


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 171/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N + + +  +    +A+D L   +      +  +    I  LC  G I+ A
Sbjct: 178 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 237

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR--------TDLVWK-LYHDLIESGYLIQA 208
              F +++  G+  S+ T+NS + G  K  +         D+V + +  ++I    L+  
Sbjct: 238 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 297

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ E  EL ++++  G+ P    +N L+  +C +      + +L  MV    +PD
Sbjct: 298 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 357

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I G C  ++  +  +VF ++ +RG V + V Y+ ++ G C+ G +  A +++ 
Sbjct: 358 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 417

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+LP+  TY  ++ G C    LE+A  + +++         V Y T+I G+C  G
Sbjct: 418 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 477

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A++LF  +  KG+  +V+TY  +I G CK+G +
Sbjct: 478 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 514



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 29/320 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P LV  +  F ++   + F + +DF   L+  G + N  +L + I C C       A+  
Sbjct: 76  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 135

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ ++G      T+N+                          LI+    +GKVSE   
Sbjct: 136 LGKVMKLGYEPDTTTFNT--------------------------LIKGLFLEGKVSEAVV 169

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ +++E+G  P+   +N +++  C   +     +LL  M  RN   D FTY  +I+ LC
Sbjct: 170 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 229

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           +      A  +F +++ +G     V Y +++ GLCK G   D   +  +M+ + ++PN  
Sbjct: 230 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 289

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T+N ++  + +   L+EA  L+KEM+ +G     +TYNTL+ G C+  R  EA ++ + M
Sbjct: 290 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 349

Query: 401 AQKGIFRDVITYNTLIQGYC 420
            +     D++T+ +LI+GYC
Sbjct: 350 VRNKCSPDIVTFTSLIKGYC 369



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 157/340 (46%), Gaps = 13/340 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +I  F+ + +  G    +V+ N L   L +A  +      L    S    PN  +  + +
Sbjct: 237 AISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 295

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-------DLVW--KLY 196
               + G ++EA   + ++   G+  +I T+N+ + G    +R        DL+   K  
Sbjct: 296 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 355

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    LI+ +C   +V +G ++ R + + GLV     ++ L+  FC+        EL
Sbjct: 356 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 415

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              MV+    PD  TY  +++GLC + K  +A  +F DL++       VMYTT+I G+CK
Sbjct: 416 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 475

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + DA  ++  +  KG+ PN  TY  MI G C+  +L EA  L ++M + G      T
Sbjct: 476 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 535

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           YNTLI      G    +  L EEM   G   D  +   +I
Sbjct: 536 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVI 575



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR-FCEKKNFGRV 253
           + H++     +I  FC   K    Y +L +V++ G  P+ T FN LI   F E    G+V
Sbjct: 109 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE----GKV 164

Query: 254 SE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
           SE   L+  MV     PD  TY  ++NG+C+S     A  +   ++ER    D   Y+T+
Sbjct: 165 SEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI 224

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I  LC+ G +  A  ++ EM  KG+  +  TYNS++ G C+     +   L K+M+ +  
Sbjct: 225 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 284

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               +T+N L+      G+  EA  L++EM  +GI  ++ITYNTL+ GYC + ++
Sbjct: 285 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 339



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 106/213 (49%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K  +   L ++++    +P    F++  S     K F  V +    +     A + +T
Sbjct: 56  DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 115

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +IN  C+  K   AY V   + + GY PDT  + T+I GL   G + +A  +   M+
Sbjct: 116 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 175

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  TYNS+++G CR  +   A  L ++M ++       TY+T+I  LC  G  D
Sbjct: 176 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 235

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            A  LF+EM  KGI   V+TYN+L++G CK GK
Sbjct: 236 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 268



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 146/372 (39%), Gaps = 61/372 (16%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
           Q   + L+   FQ + SH G  PD+++  +L D L +    + A++  +    S     +
Sbjct: 405 QSGKIKLAEELFQEMVSH-GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 463

Query: 142 ELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +Y   I+ +C+ G +E+A+  F  L   GV  ++ T+   + G  K         L   
Sbjct: 464 VMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRK 523

Query: 199 LIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENT-----------AFN 238
           + E G          LI+A   DG ++   +L+ ++   G   + +           A  
Sbjct: 524 MEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMK 583

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV-----------ING--------- 278
           +L  R+C  K      +LL    +      + T+ ++           +N          
Sbjct: 584 RLTLRYCLSKGSKSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSA 643

Query: 279 -LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW-LGDARKMWFEMIHKGLL 336
            L +  ++L    V    K R      V+ T  +     + W L DA     +++    L
Sbjct: 644 ELNRDLRKLRRSSVLKKFKNRDV---RVLVTNEL-----LTWGLEDAE---CDLMVDLEL 692

Query: 337 PNEYTYNSMIHGYCRID----NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           P +  + +   G  R       +  A+ LHKEM+ +G    T+TY++LI G C   R DE
Sbjct: 693 PTDAVHYAHRAGRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDE 752

Query: 393 AYHLFEEMAQKG 404
           A  + + M  KG
Sbjct: 753 ANQMLDLMVTKG 764



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  ++ EMI    LP+   ++       R           K++   G      T N +I
Sbjct: 61  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 120

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C   +T  AY +  ++ + G   D  T+NTLI+G   EGK+
Sbjct: 121 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKV 164



 Score = 39.3 bits (90), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A  L +EM Q+GI  + ITY++LI G+CKE ++
Sbjct: 718 AEELHKEMIQRGIAPNTITYSSLIDGFCKENRL 750


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++  M+ + LLP+  TYN++I+G C+  +L++A  L  EM+ KG     +
Sbjct: 259 KKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+K       E+   M++++  PD  TY  +
Sbjct: 229 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +   
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSR 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRNGHVPSVVTYNVLMNG 431


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 167/334 (50%), Gaps = 15/334 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++   L   L +AR  + A+  L    S    P+  +L + +Q LC    +++A   
Sbjct: 37  PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 96

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
             ++   G+  +  T+++ + G  K +R D    L   + E G          +I  FC 
Sbjct: 97  VEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCR 156

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V E +  + Q++ +G  P+   +  LI  FC+ ++ GR  ELL  +  R   PD  T
Sbjct: 157 ARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVT 216

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+GLCK+ +  +A  +F   +E    P  + Y ++I G C+ G + +A ++  +M+
Sbjct: 217 YSTVIDGLCKAGRLRDAVDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMV 273

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                P+  TY +++  +C++  L++A  L ++M+        VT+ +L+ GLC  GR +
Sbjct: 274 DDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRME 333

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L EE+ ++G    + TYN ++ GYCK  ++
Sbjct: 334 DALELLEEITRRGCPPTIYTYNCVVDGYCKANQV 367



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 158/367 (43%), Gaps = 46/367 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD  +  V+  SL        A + ++     G + N  +    +  LC+   ++EA   
Sbjct: 72  PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 131

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTD--------LVWKLYH-DLIESGYLIQAFCN 211
              + E G   ++ T+NS + G  +  R D        +V +  H D+I    LI  FC 
Sbjct: 132 VETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCK 191

Query: 212 DGKVSEGYELLRQVLEDGLVPE--------------------------------NTAFNK 239
              V  G ELL +V   G  P+                                   +N 
Sbjct: 192 SRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNS 251

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI  +C   +      LL  MV    APD  TY  +++  CK  +  +AY +F  +    
Sbjct: 252 LIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANK 311

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             PD V +T+++ GLC  G + DA ++  E+  +G  P  YTYN ++ GYC+ + + +A+
Sbjct: 312 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAE 371

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG--IFRDVITYNTLIQ 417
            L  +   +G+   TVTYN L+AG C  GRTD+A    +++  +G      V  Y  ++ 
Sbjct: 372 ELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILD 431

Query: 418 GYCKEGK 424
             C++G+
Sbjct: 432 ALCRDGR 438



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 157/339 (46%), Gaps = 17/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++   L     ++R     ++ L      GF+P+  +    I  LC++G + +A
Sbjct: 174 GCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDA 233

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F   +EM    +  T+NS + G  +    D   +L           D++    L+ A
Sbjct: 234 VDIF---EEMSCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSA 290

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++ + YEL +Q++ + L P+   F  L+   C +       ELL  +  R   P 
Sbjct: 291 FCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPT 350

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  V++G CK+ +  +A  +  D + RG+VP+TV Y  ++ G C+ G    A +   
Sbjct: 351 IYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLD 410

Query: 329 EM-IHKGLLPNEYT-YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           ++    G  P     Y  ++   CR    ++A + ++EM+ +GY     T+ T++  LC 
Sbjct: 411 QLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCK 470

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  +A+ L EEM + G      T + ++  YC+ G I
Sbjct: 471 AHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMI 509



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 105/192 (54%), Gaps = 5/192 (2%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAY 289
           P     N +I   C     GR+   L      N A  PD  TY ++++GL K+R+  +A 
Sbjct: 3   PGTLLHNVVIGGLCRA---GRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAV 59

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           +V  ++    +VPD    T V+  LC    + DAR++  EM+H+G+  N  TY++++ G 
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGL 119

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+ + L+EA  L + M ++G   T VTYN++I G C   R DEA+   E+M  +G   D+
Sbjct: 120 CKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDI 179

Query: 410 ITYNTLIQGYCK 421
           ITY  LI G+CK
Sbjct: 180 ITYTALIGGFCK 191



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 146/311 (46%), Gaps = 11/311 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           GF+PD+V+ + + D L +A   + A+D  +    +P   +    I   C +G ++EA   
Sbjct: 209 GFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGYCRAGDMDEAIRL 268

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
             K+ +      + T+ + +    K+ R D  ++L+          D++    L+   C 
Sbjct: 269 LGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCG 328

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G++ +  ELL ++   G  P    +N ++  +C+     +  EL+    +R   P+  T
Sbjct: 329 EGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEELVADFRSRGFVPNTVT 388

Query: 272 YEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFE 329
           Y  ++ G C++ +  +A +  + L  E G  P +V MY  ++  LC+ G   DA + + E
Sbjct: 389 YNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEE 448

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           MI +G +P   T+ +++   C+    ++A  L +EM+  G+     T + +++  C  G 
Sbjct: 449 MIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGM 508

Query: 390 TDEAYHLFEEM 400
             +A  L  E+
Sbjct: 509 IQKADELASEL 519



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 1/221 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C  G++     + RQ + D   P+   + KL+    + +      ++L  MV+  
Sbjct: 11  VIGGLCRAGRLRHALGVYRQ-MNDAHPPDFLTYTKLVHGLSKARRLRDAVQVLQEMVSAR 69

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PDN T   V+  LC   +  +A  +  ++  RG   + + Y+ ++ GLCK   L +A 
Sbjct: 70  HVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAV 129

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M  +G  P   TYNS+I G+CR   ++EA    ++M+ +G     +TY  LI G 
Sbjct: 130 ALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGF 189

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C          L  E+ ++G   D++TY+T+I G CK G++
Sbjct: 190 CKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRL 230



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/219 (20%), Positives = 90/219 (41%), Gaps = 15/219 (6%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
            FQ + ++   SPD+V+   L D L      + A++ L+     G  P   +    +   
Sbjct: 303 LFQQMVANK-LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGY 361

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C++  + +A    +  +  G   +  T+N  + GC +  RTD   +    L   G     
Sbjct: 362 CKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPT 421

Query: 204 ------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  ++ A C DG+  +  +   ++++ G VP    F  ++   C+     +  ELL
Sbjct: 422 SVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELL 481

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M+     P   T + V++  C++    +A  + ++L+
Sbjct: 482 EEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADELASELR 520


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 171/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+    N+ F +  +      AMD  +     G SP+  S    I  LC+ G +++A
Sbjct: 373 GISPNHHIFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDA 432

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++   GV   I  ++S + G   +D+ + V +L+ +++  G          ++  
Sbjct: 433 EVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCN 492

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V EG  L+  +   G+ P+  ++N LI   C        S+LL  MV+    PD
Sbjct: 493 LCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPD 552

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +F+Y  +++G CK+ +   AY  F  +   G  P  V Y T++HGL +     +A++++ 
Sbjct: 553 SFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYL 612

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI+ G   + YTYN +++G C+ + ++EA ++ + +  KG     +T+N +I  L   G
Sbjct: 613 NMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGG 672

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  LF  +   G+ ++V+TY  +++   +EG +
Sbjct: 673 RKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSL 709



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 151/334 (45%), Gaps = 29/334 (8%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQC 147
           RFF       G  P + +  ++        A     D L+   + G SPN +   ++   
Sbjct: 328 RFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSA 387

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
             + G+I++A   F+K+++ G                          L  D +  G LI 
Sbjct: 388 YAKCGIIDKAMDIFNKMRQQG--------------------------LSPDAVSYGALID 421

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G+V +      Q++ +G+ P+   F+ L+   C    + +V EL   M+     P
Sbjct: 422 ALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHP 481

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  ++  LCK  + +E  R+ + ++  G  PD + Y T+I G C  G + +A K+ 
Sbjct: 482 NIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLL 541

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  GL P+ ++YN+++HGYC+   ++ A    ++ML  G     VTYNT++ GL   
Sbjct: 542 EGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQT 601

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            R  EA  L+  M   G   D+ TYN ++ G CK
Sbjct: 602 KRFSEAKELYLNMINSGTKWDIYTYNIILNGLCK 635



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 143/296 (48%), Gaps = 32/296 (10%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +PN  +  + I C C  G +E  F AF  + + G                        W+
Sbjct: 91  APNRCTYSILIGCFCRMGHLEHGFAAFGLILKTG------------------------WR 126

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYE-LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           + H +I    L+   C+  +V E  + LL+++ E G +P+  ++N L+   C +K     
Sbjct: 127 MDHIVINQ--LLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEA 184

Query: 254 SELLHTMVARNRA----PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
            ELLH M+A ++     P+  +Y  VING     +  + Y +F ++ +RG  PD V YTT
Sbjct: 185 LELLH-MMADDQVWSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTT 243

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           VI GLCK      A  ++ +MI  G+ PN  TYN +IHGY  I   +E  R+ +EM   G
Sbjct: 244 VIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGG 303

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 TY +L+  LC +GR  EA   F+ M  KGI   V TY  ++ GY  +G +
Sbjct: 304 PKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGAL 359



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 168/370 (45%), Gaps = 49/370 (13%)

Query: 104 PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P++VS + + +         + + + ++ +D  G  P+  +    I  LC++ L + A  
Sbjct: 201 PNVVSYSTVINGFFTEGQVDKPYNLFLEMMDR-GIPPDVVTYTTVIDGLCKAQLFDRAEA 259

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
            F ++ + GV  +I T+N  + G + I +   V ++  ++   G          L+   C
Sbjct: 260 VFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLC 319

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +G+  E       ++  G+ P  T +  ++  +  K     + +LL+ MVA   +P++ 
Sbjct: 320 KNGRCREARFFFDSMIGKGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHH 379

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            +    +   K     +A  +FN ++++G  PD V Y  +I  LCK+G + DA   + +M
Sbjct: 380 IFNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQM 439

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV--------------- 375
           I++G+ P+   ++S+++G C +D  E+ + L  EML+ G     V               
Sbjct: 440 INEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRV 499

Query: 376 --------------------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
                               +YNTLI G CL G  DEA  L E M   G+  D  +YNTL
Sbjct: 500 MEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTL 559

Query: 416 IQGYCKEGKI 425
           + GYCK G+I
Sbjct: 560 LHGYCKAGRI 569



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 167/365 (45%), Gaps = 40/365 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P +V+ N +   L + + F  A +    + ++G   +  +  + +  LC+S  ++EA
Sbjct: 583 GITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEA 642

Query: 158 FCAFSKLKEMGVFGSIKTWN---SALL-GCIKIDRTDLVWK-----LYHDLIESGYLIQA 208
              F  L   G+  +I T+N    ALL G  K D  DL        L  +++    +++ 
Sbjct: 643 IKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVEN 702

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G + E   L   + ++G  P +   N L+ R   + +  R    L  +  RN + +
Sbjct: 703 LIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVE 762

Query: 269 NFTYEEVIN---------------------------GLCKSRKRLE-AYRVFNDLKERGY 300
             T   +I+                            L K  +R++ AY +F ++  +G 
Sbjct: 763 ASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKGL 822

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD V Y T++HGL + G   +A++++  MI+     N YTYN +++G C+ + ++EA +
Sbjct: 823 TPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFK 882

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           + + +  KG     +T+N +I  L   GR ++A  LF  +   G+  DV+TY  + +   
Sbjct: 883 MFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLI 942

Query: 421 KEGKI 425
           +EG +
Sbjct: 943 EEGSL 947



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 140/329 (42%), Gaps = 27/329 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+  D +  N L + L + +    AMD L       G  P+  S  + ++ LC     EE
Sbjct: 124 GWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEE 183

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A                       L  + +   D VW    +++    +I  F  +G+V 
Sbjct: 184 A-----------------------LELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQVD 220

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           + Y L  ++++ G+ P+   +  +I   C+ + F R   +   M+     P+  TY  +I
Sbjct: 221 KPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLI 280

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G     K  E  R+  ++   G  P+   Y ++++ LCK G   +AR  +  MI KG+ 
Sbjct: 281 HGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIK 340

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY  M+HGY     L E   L   M+  G       +N   +     G  D+A  +
Sbjct: 341 PSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMDI 400

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           F +M Q+G+  D ++Y  LI   CK G++
Sbjct: 401 FNKMRQQGLSPDAVSYGALIDALCKLGRV 429



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/341 (21%), Positives = 153/341 (44%), Gaps = 15/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPN--SLELYIQCLCESGLI 154
           G  PD VS N+L   L   +  + A++ L    D   +S  PN  S    I      G +
Sbjct: 160 GCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTVINGFFTEGQV 219

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++ +  F ++ + G+   + T+ + + G  K    D    ++  +I++G          L
Sbjct: 220 DKPYNLFLEMMDRGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCL 279

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  + + GK  E   +L ++   G  P    +  L++  C+            +M+ +  
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGI 339

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  +++G        E + + N +   G  P+  ++        K G +  A  
Sbjct: 340 KPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAMD 399

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M  +GL P+  +Y ++I   C++  +++A+    +M+++G     V +++L+ GLC
Sbjct: 400 IFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGLC 459

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              + ++   LF EM   GI  +++ +NT++   CKEG+++
Sbjct: 460 TVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 500



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/364 (24%), Positives = 143/364 (39%), Gaps = 46/364 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S N L D    A     A   L+   S G  P+  S    +   C++G I+ A
Sbjct: 513 GVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSA 572

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           +  F K+   G+   + T+N+ L G  +  R     +LY ++I SG          ++  
Sbjct: 573 YSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNG 632

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    V E  ++ + +   GL      FN +I    +        +L   + A     +
Sbjct: 633 LCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQN 692

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG------- 321
             TY  V+  L +     E   +F+ +++ G  P++ M   ++  L   G +        
Sbjct: 693 VVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 752

Query: 322 --DARKMWFEMI----------------HKGLLP------NEYTYNSMIHGYCRIDNLEE 357
             D R    E                  H   LP      NE   +++I    RID   +
Sbjct: 753 KLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRID---D 809

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L +EML KG     VTYNT++ GL   GR  EA  L+  M       ++ TYN ++ 
Sbjct: 810 AYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILN 869

Query: 418 GYCK 421
           G CK
Sbjct: 870 GLCK 873



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 141/340 (41%), Gaps = 14/340 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF-KVAMDFLD--STGFSPNPNSLELYIQ 146
           ++F Q ++   G +PD+V  + L   L     + KV   F +  + G  PN       + 
Sbjct: 434 VKFNQMINE--GVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILC 491

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC+ G + E       ++ MGV   + ++N+ + G       D   KL   ++  G   
Sbjct: 492 NLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKP 551

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  L+  +C  G++   Y   R++L +G+ P    +N ++    + K F    EL 
Sbjct: 552 DSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELY 611

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+      D +TY  ++NGLCKS    EA ++F +L  +G   + + +  +I  L K 
Sbjct: 612 LNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKG 671

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA  ++  +   GL+ N  TY  ++       +LEE   L   M   G    +   
Sbjct: 672 GRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQML 731

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           N L+  L   G    A     ++ ++    +  T + LI 
Sbjct: 732 NALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLIS 771



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 103/221 (46%), Gaps = 14/221 (6%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKL---ISRFCEKKNFGRVSELLHTMVAR-------N 264
           + +  +L  ++L         AFN L   +SR   +++    SE + ++  R        
Sbjct: 30  LGDALKLFDELLPHARPASVVAFNHLLAAVSRSSGRRSTTSESETVVSLFNRMVRDCYIK 89

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP+  TY  +I   C+       +  F  + + G+  D ++   +++GLC    +G+A 
Sbjct: 90  VAPNRCTYSILIGCFCRMGHLEHGFAAFGLILKTGWRMDHIVINQLLNGLCDGKRVGEAM 149

Query: 325 KMWFE-MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK---GYGETTVTYNTL 380
            +  + M   G +P+  +YN ++ G C     EEA  L   M D          V+Y+T+
Sbjct: 150 DVLLQRMPELGCMPDTVSYNILLKGLCNEKRAEEALELLHMMADDQVWSCPPNVVSYSTV 209

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           I G    G+ D+ Y+LF EM  +GI  DV+TY T+I G CK
Sbjct: 210 INGFFTEGQVDKPYNLFLEMMDRGIPPDVVTYTTVIDGLCK 250



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 137/330 (41%), Gaps = 13/330 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARA---FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G   ++V+  ++ ++L+E  +   F      ++  G +PN   L   ++ L   G I  A
Sbjct: 688  GLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 747

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKID----RTDLVWKLYHDLIE--SGYLIQAFCN 211
                SKL E   F    +  S L+     D        + K Y  L E  S  LI+    
Sbjct: 748  GAYLSKLDERN-FSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK---K 803

Query: 212  DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              ++ + Y L R++L  GL P+   +N ++    +   F    EL  +M+      + +T
Sbjct: 804  ARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYT 863

Query: 272  YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
            Y  ++NGLCKS    EA+++F  L  +G   + + +  +I  L K G   DA  ++  + 
Sbjct: 864  YNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIP 923

Query: 332  HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              GL+P+  TY  +        +LEE   L   M   G    +   N L+  L   G   
Sbjct: 924  ANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDIS 983

Query: 392  EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             A     ++ +K    +  T + LI  + +
Sbjct: 984  RAGAYLSKLDEKNFSLEASTTSELISLFSR 1013



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 43/217 (19%), Positives = 83/217 (38%), Gaps = 9/217 (4%)

Query: 154  IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GY 204
            I++A+  F ++   G+   + T+N+ L G  +  R     +LY  +I S           
Sbjct: 807  IDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNI 866

Query: 205  LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            ++   C    V E +++ + +   GL      FN +I    +        +L   + A  
Sbjct: 867  ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926

Query: 265  RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              PD  TY  V   L +     E   +F  +++ G   D+ +   ++  L + G +  A 
Sbjct: 927  LVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRAG 986

Query: 325  KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
                ++  K       T + +I  + R +    AK L
Sbjct: 987  AYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSL 1023


>gi|356519743|ref|XP_003528529.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 153/327 (46%), Gaps = 29/327 (8%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G SP++V    L D   +     +A +    ++  G  PNP++  + +    + GL  E
Sbjct: 187 FGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQRE 246

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
            F  +  +K  G+  +   +N                           LI  +CNDG V 
Sbjct: 247 GFQMYENMKRSGIVPNAYAYNC--------------------------LISEYCNDGMVD 280

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           + +++  ++ E G+      +N LI   C  K FG   +L+H +     +P+  TY  +I
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG C  RK   A R+FN LK  G  P  V Y T+I G  K+  L  A  +  EM  + + 
Sbjct: 341 NGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIA 400

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P++ TY  +I  + R+++ E+A  +H  M   G      TY+ L+ GLC+HG   EA  L
Sbjct: 401 PSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVLLHGLCVHGNMKEASKL 460

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           F+ + +  +  + + YNT+I GYCKEG
Sbjct: 461 FKSLGEMHLQPNSVIYNTMIHGYCKEG 487



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 159/344 (46%), Gaps = 15/344 (4%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL----VEARAFKVAMDFLDSTGFSPN 137
           +  NV+L+   F  + +  G  P+  + +VL +      ++   F++  + +  +G  PN
Sbjct: 205 KDGNVMLAKNLFCKM-NRLGLVPNPHTYSVLMNGFFKQGLQREGFQM-YENMKRSGIVPN 262

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +    I   C  G++++AF  F++++E G+   + T+N  + G  +  +     KL H
Sbjct: 263 AYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVH 322

Query: 198 ---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
                    +++    LI  FC+  K+     L  Q+   GL P    +N LI+ + + +
Sbjct: 323 KVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVE 382

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           N     +L+  M  R  AP   TY  +I+   +     +A  + + +++ G VPD   Y+
Sbjct: 383 NLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYS 442

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            ++HGLC  G + +A K++  +    L PN   YN+MIHGYC+  +   A RL  EM+  
Sbjct: 443 VLLHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQS 502

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           G      ++ + I  LC   +  EA  L  +M   G+   V  Y
Sbjct: 503 GMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 136/317 (42%), Gaps = 11/317 (3%)

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGS 172
           L+  R     M  L    F+P      LY   +     S   ++A      +   G    
Sbjct: 64  LISGRIPSSLMLQLTQAHFTPCSTYTPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPL 123

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIES--------GYLIQAFCNDGKVSEGYELLRQ 224
             T+N+ L   I+ +  D  W ++++L           G +I+  C  G   +G+ LL  
Sbjct: 124 SNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAM 183

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + E GL P    +  LI   C+  N      L   M      P+  TY  ++NG  K   
Sbjct: 184 LEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGL 243

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
           + E ++++ ++K  G VP+   Y  +I   C  G +  A K++ EM  KG+     TYN 
Sbjct: 244 QREGFQMYENMKRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNI 303

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G CR     EA +L  ++   G     VTYN LI G C   + D A  LF ++   G
Sbjct: 304 LIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSG 363

Query: 405 IFRDVITYNTLIQGYCK 421
           +   ++TYNTLI GY K
Sbjct: 364 LSPTLVTYNTLIAGYSK 380



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/200 (30%), Positives = 102/200 (51%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L+  +V +  +F  +I   CE   F +   LL  +     +P+   Y  +I+G CK    
Sbjct: 150 LKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNV 209

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
           + A  +F  +   G VP+   Y+ +++G  K G   +  +M+  M   G++PN Y YN +
Sbjct: 210 MLAKNLFCKMNRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCL 269

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I  YC    +++A ++  EM +KG     +TYN LI GLC   +  EA  L  ++ + G+
Sbjct: 270 ISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGL 329

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             +++TYN LI G+C   K+
Sbjct: 330 SPNIVTYNILINGFCDVRKM 349



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 96/225 (42%), Gaps = 18/225 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+ N+L +   + R    A+     L S+G SP   +L  Y   +     +E  
Sbjct: 328 GLSPNIVTYNILINGFCDVRKMDSAVRLFNQLKSSGLSP---TLVTYNTLIAGYSKVENL 384

Query: 158 FCAFSKLKEM---GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
             A   +KEM    +  S  T+   +    +++ T+   +++  + +SG          L
Sbjct: 385 AGALDLVKEMEERCIAPSKVTYTILIDAFARLNHTEKACEMHSLMEKSGLVPDVYTYSVL 444

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +   C  G + E  +L + + E  L P +  +N +I  +C++ +  R   LL+ MV    
Sbjct: 445 LHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRALRLLNEMVQSGM 504

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            P+  ++   I  LC+  K  EA  +   +   G  P   +Y  V
Sbjct: 505 VPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLYKMV 549



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 12/207 (5%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV-SELLHTMVARNRAP-DNFT--YEEVI 276
           +L  +L  G++P+  +   LI R       GR+ S L+  +   +  P   +T  Y+ V+
Sbjct: 44  ILNHLLSSGMLPQAQS---LILRLIS----GRIPSSLMLQLTQAHFTPCSTYTPLYDTVV 96

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           N    S    +A    + +   G+VP +  +  ++  L +  +   A  ++ E+  K +L
Sbjct: 97  NAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFNELKSKVVL 156

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            + Y++  MI G C      +  RL   + + G     V Y TLI G C  G    A +L
Sbjct: 157 -DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDGNVMLAKNL 215

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           F +M + G+  +  TY+ L+ G+ K+G
Sbjct: 216 FCKMNRLGLVPNPHTYSVLMNGFFKQG 242



 Score = 48.1 bits (113), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 1/123 (0%)

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T +Y TV++          A      MIH+G +P   T+N+++    R +  ++A  +  
Sbjct: 89  TPLYDTVVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLLCLLIRSNYFDKAWWIFN 148

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E+  K   +   ++  +I G C  G   + + L   + + G+  +V+ Y TLI G CK+G
Sbjct: 149 ELKSKVVLDA-YSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKDG 207

Query: 424 KIV 426
            ++
Sbjct: 208 NVM 210


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 177/341 (51%), Gaps = 16/341 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIE 155
            YG  P+ V+   + + + ++    +AM+ L   +      +     + I  LC+ G ++
Sbjct: 319 EYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLD 378

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLI 206
            AF  F++++  G+  +I T+N  + G     R D   KL  D+I+            LI
Sbjct: 379 NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 438

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            +F  +GK+ E  EL ++++  G+ P+   +  LI  FC++ +  + ++++  MV++   
Sbjct: 439 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCD 498

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  T+  +ING CK+ +  +   +F  +  RG V DTV Y T+I G C++G L  A+++
Sbjct: 499 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKEL 558

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK-EMLDKGYGETTV-TYNTLIAGL 384
           + EM+ + + PN  TY  ++ G C  DN E  K L   E ++K   E  +  YN +I G+
Sbjct: 559 FQEMVSRKVPPNIVTYKILLDGLC--DNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 616

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   + D+A+ LF  +  KG+   V TYN +I G CK+G +
Sbjct: 617 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 657



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P+ ++ + L + L        A++ +D     G  P+  ++   +  LC SG   EA
Sbjct: 251 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 310

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+ E G   +  T+   L    K  +T L  +L           D ++   +I  
Sbjct: 311 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 370

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +   + L  ++   G+      +N LI  FC    +   ++LL  M+ R   P+
Sbjct: 371 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 430

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K  EA  +  ++  RG  PDT+ YT++I G CK   L  A +M  
Sbjct: 431 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 490

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ KG  PN  T+N +I+GYC+ + +++   L ++M  +G    TVTYNTLI G C  G
Sbjct: 491 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 550

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + + A  LF+EM  + +  +++TY  L+ G C  G+
Sbjct: 551 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 586



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 166/334 (49%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++  + LF ++ + + + + +     ++  G + N  +L + I C C    +  AF A
Sbjct: 184 PTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSA 243

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIK------IDRTDLVWKLYH--DLIESGYLIQAFCN 211
             K+ ++G   +  T+++ + G C++      ++  D + ++ H  DLI    L+   C 
Sbjct: 244 MGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCL 303

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK +E   L+ +++E G  P    +  +++  C+        ELL  M  RN   D   
Sbjct: 304 SGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 363

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK      A+ +FN+++ +G   + + Y  +I G C  G   D  K+  +MI
Sbjct: 364 YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMI 423

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + PN  T++ +I  + +   L EA+ LHKEM+ +G    T+TY +LI G C     D
Sbjct: 424 KRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLD 483

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  + + M  KG   ++ T+N LI GYCK  +I
Sbjct: 484 KANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 517



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL++ N L + L  +     AM  +D     G  PN  +    +  +C+SG    A
Sbjct: 286 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 345

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
                K++E  +      ++  + G  K    D  + L++++         I    LI  
Sbjct: 346 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 405

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FCN G+  +G +LLR +++  + P    F+ LI  F ++       EL   M+ R  APD
Sbjct: 406 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 465

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK     +A ++ + +  +G  P+   +  +I+G CK   + D  +++ 
Sbjct: 466 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 525

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +G++ +  TYN++I G+C +  L  AK L +EM+ +      VTY  L+ GLC +G
Sbjct: 526 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG 585

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +++A  +FE++ +  +  D+  YN +I G C   K+
Sbjct: 586 ESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 622



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/329 (25%), Positives = 146/329 (44%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G + ++++ N+L      A  +      L        +PN  +  + I    + G + EA
Sbjct: 391 GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREA 450

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G+     T+ S + G  K +  D   ++   ++  G          LI  
Sbjct: 451 EELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILING 510

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +G EL R++   G+V +   +N LI  FCE        EL   MV+R   P+
Sbjct: 511 YCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPN 570

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY+ +++GLC + +  +A  +F  +++     D  +Y  +IHG+C    + DA  ++ 
Sbjct: 571 IVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFC 630

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KG+ P   TYN MI G C+   L EA+ L ++M + G+     TYN LI      G
Sbjct: 631 SLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGDG 690

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
              ++  L EE+ + G   D  T   +I 
Sbjct: 691 DATKSVKLIEELKRCGFSVDASTIKMVID 719



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 41/264 (15%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y + + SG +      D K  +  +L R ++    +P    F++L S   + K +  V  
Sbjct: 154 YRERLRSGLV------DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLA 207

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M  +  A + +T   +IN  C+ RK   A+     + + GY P+T+ ++T+I+GLC
Sbjct: 208 LCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLC 267

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG------ 369
             G + +A ++   M+  G  P+  T N++++G C      EA  L  +M++ G      
Sbjct: 268 LEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAV 327

Query: 370 -YGET----------------------------TVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YG                               V Y+ +I GLC HG  D A++LF EM
Sbjct: 328 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 387

Query: 401 AQKGIFRDVITYNTLIQGYCKEGK 424
             KGI  ++ITYN LI G+C  G+
Sbjct: 388 EMKGITTNIITYNILIGGFCNAGR 411


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 171/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N + + +  +    +A+D L   +      +  +    I  LC  G I+ A
Sbjct: 188 GCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR--------TDLVWK-LYHDLIESGYLIQA 208
              F +++  G+  S+ T+NS + G  K  +         D+V + +  ++I    L+  
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ E  EL ++++  G+ P    +N L+  +C +      + +L  MV    +PD
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I G C  ++  +  +VF ++ +RG V + V Y+ ++ G C+ G +  A +++ 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+LP+  TY  ++ G C    LE+A  + +++         V Y T+I G+C  G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A++LF  +  KG+  +V+TY  +I G CK+G +
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 154/320 (48%), Gaps = 29/320 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P LV  +  F ++   + F + +DF   L+  G + N  +L + I C C       A+  
Sbjct: 86  PSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ ++G      T+N+                          LI+    +GKVSE   
Sbjct: 146 LGKVMKLGYEPDTTTFNT--------------------------LIKGLFLEGKVSEAVV 179

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ +++E+G  P+   +N +++  C   +     +LL  M  RN   D FTY  +I+ LC
Sbjct: 180 LVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLC 239

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           +      A  +F +++ +G     V Y +++ GLCK G   D   +  +M+ + ++PN  
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T+N ++  + +   L+EA  L+KEM+ +G     +TYNTL+ G C+  R  EA ++ + M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 401 AQKGIFRDVITYNTLIQGYC 420
            +     D++T+ +LI+GYC
Sbjct: 360 VRNKCSPDIVTFTSLIKGYC 379



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 8/235 (3%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-SRFCEKKNFGRV 253
           + H++     +I  FC   K    Y +L +V++ G  P+ T FN LI   F E    G+V
Sbjct: 119 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE----GKV 174

Query: 254 SE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
           SE   L+  MV     PD  TY  ++NG+C+S     A  +   ++ER    D   Y+T+
Sbjct: 175 SEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTI 234

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I  LC+ G +  A  ++ EM  KG+  +  TYNS++ G C+     +   L K+M+ +  
Sbjct: 235 IDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI 294

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               +T+N L+      G+  EA  L++EM  +GI  ++ITYNTL+ GYC + ++
Sbjct: 295 VPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 13/341 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +I  F+ + +  G    +V+ N L   L +A  +      L    S    PN  +  + +
Sbjct: 247 AISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-------DLVW--KLY 196
               + G ++EA   + ++   G+  +I T+N+ + G    +R        DL+   K  
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    LI+ +C   +V +G ++ R + + GLV     ++ L+  FC+        EL
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              MV+    PD  TY  +++GLC + K  +A  +F DL++       VMYTT+I G+CK
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + DA  ++  +  KG+ PN  TY  MI G C+  +L EA  L ++M + G      T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           YNTLI      G    +  L EEM   G   D  +   +I 
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 106/213 (49%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K  +   L ++++    +P    F++  S     K F  V +    +     A + +T
Sbjct: 66  DIKKDDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +IN  C+  K   AY V   + + GY PDT  + T+I GL   G + +A  +   M+
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMV 185

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  TYNS+++G CR  +   A  L ++M ++       TY+T+I  LC  G  D
Sbjct: 186 ENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            A  LF+EM  KGI   V+TYN+L++G CK GK
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 30/201 (14%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
           Q   + L+   FQ + SH G  PD+++  +L D L +    + A++  +    S     +
Sbjct: 415 QSGKIKLAEELFQEMVSH-GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473

Query: 142 ELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +Y   I+ +C+ G +E+A+  F  L   GV  ++ T+                      
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT--------------------- 512

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I   C  G +SE   LLR++ EDG  P +  +N LI       +    ++L+ 
Sbjct: 513 -----VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 259 TMVARNRAPDNFTYEEVINGL 279
            M +   + D  + + VI+ L
Sbjct: 568 EMKSCGFSADASSIKMVIDML 588



 Score = 41.6 bits (96), Expect = 0.87,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 44/104 (42%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  ++ EMI    LP+   ++       R           K++   G      T N +I
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C   +T  AY +  ++ + G   D  T+NTLI+G   EGK+
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKV 174


>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
 gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
          Length = 626

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 176/374 (47%), Gaps = 29/374 (7%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------- 129
           R  L+ Q++ + ++ FF W+ +  G  P  ++  ++   L  ++ F+ AM FL       
Sbjct: 101 RVLLRCQSDSVSALTFFNWVKNDLGLKPSTLNYCLILHVLAWSKEFEQAMKFLTELILLV 160

Query: 130 ---DSTGFSP----------NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
              D   F            +P   +L ++   ++G+I+E F  F ++ E+G   S+   
Sbjct: 161 KDTDEDVFQCLFLCCQDCNWDPIIFDLLLKAYVKAGMIKEGFRTFMQILEVGYVPSVIAC 220

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLE 227
           N  L G +K +   L W +Y ++   G          L   FC DG + +  + L ++ E
Sbjct: 221 NYLLNGLLKSNHIHLCWHVYGEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEE 280

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           +G  P+   +N LI+ +C +        L   M  R   PD  +Y  ++NGLCK  +  E
Sbjct: 281 EGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVRE 340

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+++ + +  RG  PD V Y T+I G CK G + +++ + +EMI  G+ P+ +T   +I 
Sbjct: 341 AHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQ 400

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           GY +   L  A  L  E+   G   +   Y+ L+A LC   R   A  L E M+Q+G   
Sbjct: 401 GYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIP 460

Query: 408 DVITYNTLIQGYCK 421
            V  YN LI+  CK
Sbjct: 461 HVEIYNKLIESLCK 474



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 170/405 (41%), Gaps = 51/405 (12%)

Query: 72  DPLFFREFLK---QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF 128
           DP+ F   LK   +   +    R F  +    G+ P +++CN L + L+++    +    
Sbjct: 181 DPIIFDLLLKAYVKAGMIKEGFRTFMQI-LEVGYVPSVIACNYLLNGLLKSNHIHLCWHV 239

Query: 129 ---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
              +   G  PN  +  +     C+ G I++      K++E G    I T+N+ + G   
Sbjct: 240 YGEMGRVGVIPNSYTFNILTHLFCKDGDIDKMNDFLEKMEEEGFEPDIVTYNTLINGYCG 299

Query: 186 IDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R    + LY          DL+    L+   C +G+V E ++LL +++  GL P+  +
Sbjct: 300 RGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVS 359

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT------------------------- 271
           +N LI  +C++        LL+ M+     PD+FT                         
Sbjct: 360 YNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELE 419

Query: 272 ----------YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                     Y+ ++  LC+  +   A  +   + +RGY+P   +Y  +I  LCK   + 
Sbjct: 420 KFGVSISPDIYDYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVA 479

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  +  E++   + PN  TY ++I   CR+    EA++L +EML  G          +I
Sbjct: 480 DALSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMI 539

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            G C      +A  L    A++    D  +Y+TL++  C++G + 
Sbjct: 540 HGYCREKDAGKAESLLVLFAKEFQIFDSESYSTLVRIVCEDGDVA 584



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 67/293 (22%), Positives = 123/293 (41%), Gaps = 12/293 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDLVS   L + L +    + A   L      G +P+  S    I   C+ G + E+   
Sbjct: 320 PDLVSYTALMNGLCKEGRVREAHQLLHRMVHRGLNPDVVSYNTLICGYCKEGKMLESKSL 379

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIESG-----YLIQAFCN 211
             ++   G+F    T    + G  K    I   +LV +L    +        YL+ + C 
Sbjct: 380 LYEMIGNGIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCE 439

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + +      LL ++ + G +P    +NKLI   C+         L   +V  N  P+  T
Sbjct: 440 EDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLT 499

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y+ +I  LC+  + +EA ++  ++   G  PD  +   +IHG C+    G A  +     
Sbjct: 500 YKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFA 559

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  + +  +Y++++   C   ++ +   L + ML  G+   ++T   +I GL
Sbjct: 560 KEFQIFDSESYSTLVRIVCEDGDVAKFMELQERMLKVGFAPNSLTCKYMIDGL 612



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 97/232 (41%), Gaps = 20/232 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +C VL     +      A++    L+  G S +P+  +  +  LCE      A
Sbjct: 387 GIFPDSFTCRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPFAA 446

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYLIQA 208
                ++ + G    ++ +N  +    K D            +V  +  +L+    LI+ 
Sbjct: 447 KTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADALSLKAEIVVGNINPNLLTYKALIRC 506

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+  E  +L+ ++L  GL P+      +I  +C +K+ G+   LL       +  D
Sbjct: 507 LCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHGYCREKDAGKAESLLVLFAKEFQIFD 566

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVPDTVMYTTVIHGLCK 316
           + +Y  ++  +C+     +    F +L+ER    G+ P+++    +I GL K
Sbjct: 567 SESYSTLVRIVCEDGDVAK----FMELQERMLKVGFAPNSLTCKYMIDGLRK 614



 Score = 41.6 bits (96), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 37/194 (19%), Positives = 85/194 (43%), Gaps = 14/194 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
             SPD+   + L  SL E     A K  ++ +   G+ P+       I+ LC+   + +A
Sbjct: 424 SISPDIY--DYLVASLCEEDRPFAAKTLLERMSQRGYIPHVEIYNKLIESLCKGDCVADA 481

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++    +  ++ T+ + +    ++ R+    KL  +++  G          +I  
Sbjct: 482 LSLKAEIVVGNINPNLLTYKALIRCLCRMGRSIEAEKLMEEMLHFGLQPDPEICRAMIHG 541

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +    +   LL    ++  + ++ +++ L+   CE  +  +  EL   M+    AP+
Sbjct: 542 YCREKDAGKAESLLVLFAKEFQIFDSESYSTLVRIVCEDGDVAKFMELQERMLKVGFAPN 601

Query: 269 NFTYEEVINGLCKS 282
           + T + +I+GL K+
Sbjct: 602 SLTCKYMIDGLRKN 615


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 186/443 (41%), Gaps = 117/443 (26%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNS---------------- 140
           Y  SPD V+ N + D+L +      A D L    S G  PN N+                
Sbjct: 237 YNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKE 296

Query: 141 ----LELYIQ---------------CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
               +EL  Q                LC  G IEEAF    +++ + +   + ++N+ + 
Sbjct: 297 AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLIN 356

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           GC++  +    +KL  ++ E G          +++ +C +GK+ +    + ++ E G  P
Sbjct: 357 GCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSP 416

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +N LI+ +C+  N G     +  M  +N   D+ T   ++  LC+ +K  EAY++ 
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476

Query: 293 NDLKERGY-----------------------------------VPDTVMYTTVIHGLCKM 317
           +  ++RGY                                   +P TV Y  +I GLC+ 
Sbjct: 477 SSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQC 536

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD---------- 367
           G    A     E++  GLLP+E TYN+++HGYCR  ++E+A + H +M++          
Sbjct: 537 GKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTC 596

Query: 368 -------------------------KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
                                    KG    TVTYNTLI  LC  GR D+A++L  EM +
Sbjct: 597 NILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEE 656

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           K +  D  TYN +I      G+I
Sbjct: 657 KELGPDHYTYNAIITALTDSGRI 679



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 23/291 (7%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           SP+   L+  I    +SG    AF  F K+K + +  ++ T N+ L   ++         
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR--------- 182

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                         + +   VS   E     ++ G+VP    FN +I  +C +  F    
Sbjct: 183 --------------YPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAV 228

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           E L+ M   N +PDN TY  +++ LCK  +  +A  +  D+K RG +P+   Y  +++G 
Sbjct: 229 EFLNVMGKYNCSPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGY 288

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CKMGWL +A  +   M    LLP+ +TYN +I+G C    +EEA +L  EM +       
Sbjct: 289 CKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDV 348

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           V+YNTLI G     +  EA+ L EEM++KG+  + +T+N +++ YCKEGK+
Sbjct: 349 VSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM 399



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 164/363 (45%), Gaps = 37/363 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GFSPD V+ N L +   +A     AF+  MD +       +  +L   ++ LC    +EE
Sbjct: 413 GFSPDCVTYNTLINGYCKAGNMGEAFR-TMDEMGRKNMKMDSVTLNTILRTLCREKKLEE 471

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A+   S  ++ G F    ++ + ++G  K    D   KL+ ++ E            +I 
Sbjct: 472 AYKLLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIG 531

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK  +    L ++LE GL+P+ T +N ++  +C + +  +  +  + MV  +  P
Sbjct: 532 GLCQCGKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKP 591

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FT   ++ GLC      +A ++FN    +G   DTV Y T+I  LCK G L DA  + 
Sbjct: 592 DVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLL 651

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG----------YGETTV-- 375
            EM  K L P+ YTYN++I        + EA+    +ML+KG            ET V  
Sbjct: 652 SEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTS 711

Query: 376 -----------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                       Y+  I  LC  G+  +A  +F E  QKGI  D  TY  L+ G  K  K
Sbjct: 712 ETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGLIKRRK 771

Query: 425 IVN 427
            ++
Sbjct: 772 SIS 774



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 160/331 (48%), Gaps = 38/331 (11%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           P+L++CN L +SLV                  P+ +S+    +             AF+ 
Sbjct: 168 PNLLTCNTLLNSLVRY----------------PSSHSVSFSRE-------------AFND 198

Query: 164 LKEMGVFGSIKTWNSALLG-CIKIDRTDLV--------WKLYHDLIESGYLIQAFCNDGK 214
             ++G+  ++ T+N  + G C++    D V        +    D +    ++   C  G+
Sbjct: 199 AIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDTLCKKGR 258

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + +  +LL  +   GL+P    +N L+  +C+       + ++  M   N  PD +TY  
Sbjct: 259 LGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNM 318

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +INGLC   +  EA+++ ++++    +PD V Y T+I+G  +   + +A K+  EM  KG
Sbjct: 319 LINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKG 378

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + PN  T+N M+  YC+   +++A     +M + G+    VTYNTLI G C  G   EA+
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +EM +K +  D +T NT+++  C+E K+
Sbjct: 439 RTMDEMGRKNMKMDSVTLNTILRTLCREKKL 469


>gi|414876286|tpg|DAA53417.1| TPA: hypothetical protein ZEAMMB73_373649 [Zea mays]
          Length = 561

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 165/370 (44%), Gaps = 51/370 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   +L++CN   D L +   ++ A      +   G  PN  +  + I  LC+ G++E+A
Sbjct: 46  GIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILIHSLCKRGMMEDA 105

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
            C F +++E G+  ++  +NS + G  K +       L ++++  G              
Sbjct: 106 LCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLTPSPASYSPLIAG 165

Query: 205 -------------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          LI  FC DG + E   L  +++E  LVP 
Sbjct: 166 LCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMDEATRLFHKMMESSLVPN 225

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              FN +I  +C   N  +  +L   M+ R   PDN+TY  +I+ +C +   ++A     
Sbjct: 226 EVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLISVVCLTLGAMKAKEFVA 285

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           DL+    V ++   T ++HG CK G    A  +  EM+    LPN YTYN  +       
Sbjct: 286 DLENNCAVLNSFSLTALMHGFCKEG---SAEILCKEMLAGHFLPNSYTYNCFLDYLANEG 342

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            LE+AK LH  ML+ G    TVT+NTLI G C+ G+   A  L ++  + G F D I+Y+
Sbjct: 343 ELEKAKVLHAAMLE-GCLANTVTFNTLIKGFCMAGQIQGAIDLMQKNTESGFFPDCISYS 401

Query: 414 TLIQGYCKEG 423
           T+I   CK G
Sbjct: 402 TIINELCKVG 411



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 137/282 (48%), Gaps = 9/282 (3%)

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
           SG I ++F    +  ++G+  ++   N+ +    K  R     KL+  + + G       
Sbjct: 29  SGHIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVT 88

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI + C  G + +   +  ++ E G+      +N LI+ +C+  NF +   LL+ MV
Sbjct: 89  YAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMV 148

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A+   P   +Y  +I GLC+      A  +  ++       +   +T +I G CK G + 
Sbjct: 149 AKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMD 208

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A +++ +M+   L+PNE T+N MI GYCR+ N+ +A +L+ +MLD+G      TY +LI
Sbjct: 209 EATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNIRKAFQLYDQMLDRGLTPDNYTYRSLI 268

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + +CL     +A     ++       +  +   L+ G+CKEG
Sbjct: 269 SVVCLTLGAMKAKEFVADLENNCAVLNSFSLTALMHGFCKEG 310



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 106/214 (49%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G + + + L  Q  + G+V    A N  I R  +   +    +L   M  R   P+  T
Sbjct: 29  SGHIHKSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVT 88

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ LCK     +A  +F+ ++E+G       Y ++I+G CK      AR +  EM+
Sbjct: 89  YAILIHSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMV 148

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  +Y+ +I G CR  +L  A  LH+EM          T+  LI+G C  G  D
Sbjct: 149 AKGLTPSPASYSPLIAGLCRKGDLASAMELHREMTRNAVSGNVYTFTALISGFCKDGNMD 208

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  LF +M +  +  + +T+N +I+GYC+ G I
Sbjct: 209 EATRLFHKMMESSLVPNEVTFNVMIEGYCRVGNI 242



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 71/141 (50%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +++R+     + G V + +     I  L K G   +A K++  M  +GL PNE TY  +I
Sbjct: 34  KSFRLTGQNCKLGIVANLLACNAWIDRLGKDGRYREAEKLFRGMADRGLDPNEVTYAILI 93

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           H  C+   +E+A  +   M +KG   T   YN+LI G C H    +A  L  EM  KG+ 
Sbjct: 94  HSLCKRGMMEDALCMFDRMREKGIRMTVYPYNSLINGYCKHNNFHQARGLLNEMVAKGLT 153

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
               +Y+ LI G C++G + +
Sbjct: 154 PSPASYSPLIAGLCRKGDLAS 174


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/287 (31%), Positives = 147/287 (51%), Gaps = 9/287 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-- 202
           I   CE+  ++EA   FS++ E   + +++T+   +    ++ R      ++ ++ E   
Sbjct: 281 IHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHC 340

Query: 203 -------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI + C D    +  ++L  +LE GL+P    +N LI  +C+K       E
Sbjct: 341 QPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALE 400

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M + N +P+  TY E+I G C+ +   +A  + + + ER   P+ V Y  +IHG C
Sbjct: 401 ILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQC 460

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G LG A K+   M   GL+P+E+TY+  I   C+   +EEA+ L + + +KG     V
Sbjct: 461 KEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEV 520

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            Y+TLI G C  G+  +   L ++M   G   + ITYN+LI GYCKE
Sbjct: 521 IYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKE 567



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 146/300 (48%), Gaps = 11/300 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN ++  + I  LCE    ++A    + + E G+  S+ T+N+ + G  K   +    ++
Sbjct: 342 PNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEI 401

Query: 196 YHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
              L+ES            LI  FC    + +   LL ++LE  L P    +N LI   C
Sbjct: 402 L-SLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQC 460

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           ++ + G   +LL  M      PD +TY   I+ LCK     EA  +F  LKE+G   + V
Sbjct: 461 KEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEV 520

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           +Y+T+I G CK+G + D R +  +M+  G +PN  TYNS+I GYC+  N +EA+ L   M
Sbjct: 521 IYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIM 580

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +       TY  LI  L      D+A+ +F++M   G   DV  Y   I  YC  G++
Sbjct: 581 IKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRL 640



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/401 (27%), Positives = 171/401 (42%), Gaps = 57/401 (14%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           + LF  E L+  N  + + +F   L   Y     L+S  ++ D +       V ++ LD 
Sbjct: 145 NALFVLEMLRSMNRRVDAFKFKLTLRC-YNMLLMLLSRFLMIDEMKS-----VYLEMLDD 198

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
              +PN  +L   +   C+ G + EA    SK+ + G+     T+ S +LG  +    D 
Sbjct: 199 M-VTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDA 257

Query: 192 VWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
              ++  +   G L         I  FC   +V E  +L  Q+ ED   P    +  +I 
Sbjct: 258 ANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIF 317

Query: 243 RFCEKKNFGRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
             C+    GR +E L+    M  ++  P+  TY  +I  LC+     +A ++ N + E+G
Sbjct: 318 ALCQ---LGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKG 374

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            +P  V Y  +I G CK G    A ++   M      PN  TYN +I G+CR  N+ +A 
Sbjct: 375 LIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAM 434

Query: 360 RLHKEMLDKGYGETTVTYNTLIAG-----------------------------------L 384
            L  +ML++      VTYN LI G                                   L
Sbjct: 435 SLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTL 494

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G  +EA  LFE + +KGI  + + Y+TLI GYCK GK+
Sbjct: 495 CKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKV 535



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/356 (27%), Positives = 156/356 (43%), Gaps = 62/356 (17%)

Query: 102 FSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
             P++V+ N+L     +      A+K+ +  ++ +G  P+  +  ++I  LC+ GL+EEA
Sbjct: 445 LQPNVVTYNILIHGQCKEGDLGSAYKL-LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEA 503

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F  LKE G+  +   +++                          LI  +C  GKVS+
Sbjct: 504 RSLFESLKEKGIKANEVIYST--------------------------LIDGYCKVGKVSD 537

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G  LL ++L  G VP +  +N LI  +C++KNF     L+  M+ R+  P   TY  +I+
Sbjct: 538 GRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILID 597

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L K  +  +A+ +F+ +   G  PD  +YT  IH  C  G L DA  +  +M  KG++P
Sbjct: 598 NLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMP 657

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL------------- 384
           +   Y   I  Y R  +++ A  + K M + G   +  TY+ LI  L             
Sbjct: 658 DTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSE 717

Query: 385 ---------------CLHGRTDEAY--HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                          C   R D  +   LF +MA+ G   +  TY   I G CK G
Sbjct: 718 LSDLSSGVASNDFSNCWR-RVDYEFTLDLFGKMAEHGCAPNANTYGKFITGLCKVG 772



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 187/422 (44%), Gaps = 35/422 (8%)

Query: 17  RNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQ--TLLSDIPSFNFNDPL 74
           R F +P +  ++ S+E     QL++ +         ++P W++  +L + IPS     P 
Sbjct: 31  RFFTSPASLPQSFSVEHDIPAQLFSIL---------SRPNWQKHPSLKNLIPSIA---PS 78

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA--MDFLDST 132
                     +   ++ FF W+   +GF  ++ S   + + LV     ++A  M  L   
Sbjct: 79  HISALFALNLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNILVPNGYLRIAENMRILMIK 138

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
               + N+L   ++ L       +AF    K K      +++ +N  L+   +    D +
Sbjct: 139 STDSSENAL-FVLEMLRSMNRRVDAF----KFKL-----TLRCYNMLLMLLSRFLMIDEM 188

Query: 193 WKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             +Y ++++            ++  +C  G V E    + ++++ GL  +   +  LI  
Sbjct: 189 KSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILG 248

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C  KN    + +  +M  +    +  +Y  +I+G C++R+  EA ++F+ + E    P 
Sbjct: 249 YCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPT 308

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              YT +I  LC++G   +A  M+ EM  K   PN +TY  +I   C   N ++AK++  
Sbjct: 309 VRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILN 368

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            ML+KG   + VTYN LI G C  G +  A  +   M       +  TYN LI G+C+  
Sbjct: 369 GMLEKGLIPSVVTYNALIDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGK 428

Query: 424 KI 425
            I
Sbjct: 429 NI 430



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 138/334 (41%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ +  VL  SL E   F  A   L+     G  P+  +    I   C+ GL   A   
Sbjct: 342 PNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSASALEI 401

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
            S ++      + +T+N  +LG  +         L H ++E            LI   C 
Sbjct: 402 LSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCK 461

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G +   Y+LL  + E GLVP+   ++  I   C++        L  ++  +    +   
Sbjct: 462 EGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVI 521

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK  K  +   + + +   G VP+++ Y ++I G CK     +AR +   MI
Sbjct: 522 YSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDIMI 581

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + P   TY  +I    + D  ++A  +  +ML  G       Y   I   C HGR  
Sbjct: 582 KRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLK 641

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L  +M  KGI  D + Y   I  Y + G I
Sbjct: 642 DAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSI 675



 Score =  111 bits (277), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 144/333 (43%), Gaps = 20/333 (6%)

Query: 101 GFSPDLVSCNVLFDSL----VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P +V+ N L D      + A A ++ +  ++S   SPN  +    I   C    I +
Sbjct: 374 GLIPSVVTYNALIDGYCKKGLSASALEI-LSLMESNNCSPNARTYNELILGFCRGKNIHK 432

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A     K+ E  +  ++ T+N  + G  K       +KL   + ESG +         I 
Sbjct: 433 AMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFID 492

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARN 264
             C  G V E   L   + E G+      ++ LI  +C+    G+VS+   LL  M++  
Sbjct: 493 TLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK---VGKVSDGRFLLDKMLSAG 549

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P++ TY  +I+G CK +   EA  + + + +R   P    YT +I  L K      A 
Sbjct: 550 CVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAH 609

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M+ +M+  G  P+ + Y + IH YC    L++A+ L  +M  KG    T+ Y   I   
Sbjct: 610 DMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAY 669

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
              G  D A+ + + M + G      TY+ LI+
Sbjct: 670 GRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIK 702



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 79/348 (22%), Positives = 137/348 (39%), Gaps = 58/348 (16%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P   +  +L D+L++   F  A D  D   STG  P+      +I   C  G +++A   
Sbjct: 587 PAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVL 646

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+   G+                     +++ L+         I A+   G +   + 
Sbjct: 647 ICKMNAKGIMPDT-----------------MLYTLF---------IDAYGRFGSIDGAFG 680

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKK-----------------------------NFG 251
           +L+++ E G  P    ++ LI      K                             ++ 
Sbjct: 681 ILKRMHEVGCEPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYE 740

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              +L   M     AP+  TY + I GLCK      A+R+F+ +KE+G  P+  +Y +++
Sbjct: 741 FTLDLFGKMAEHGCAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLL 800

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
              C++G  G+A +    MI    LP+  +   ++ G     N E+AKR+    L   Y 
Sbjct: 801 GCSCQLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYN 860

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
              + +  LI GL   G +D+   LF  M  +G      TY+ LI+G+
Sbjct: 861 YDEMVWKVLIDGLLKKGLSDKCSDLFGIMETQGCQIHPKTYSMLIEGF 908



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 74/358 (20%), Positives = 142/358 (39%), Gaps = 45/358 (12%)

Query: 111 VLFDSLVEA--RAFKVA-----MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           V++ +L++   +  KV+     +D + S G  PN  +    I   C+    +EA      
Sbjct: 520 VIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNSLIDGYCKEKNFKEARLLVDI 579

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
           + +  +  +  T+   +   +K D  D    ++  ++ +G           I A+C+ G+
Sbjct: 580 MIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGR 639

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + +   L+ ++   G++P+   +   I  +    +      +L  M      P  +TY  
Sbjct: 640 LKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSC 699

Query: 275 VINGLCKSR--------------------------KRLE---AYRVFNDLKERGYVPDTV 305
           +I  L  ++                          +R++      +F  + E G  P+  
Sbjct: 700 LIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMAEHGCAPNAN 759

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y   I GLCK+G L  A +++  M  KG  PNE  YNS++   C++    EA R    M
Sbjct: 760 TYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIM 819

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++  +     +   L+ GL   G  ++A  +F    Q     D + +  LI G  K+G
Sbjct: 820 IENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKG 877


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 170/362 (46%), Gaps = 37/362 (10%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDF 128
           P      L+Q  +  ++  FFQW  +  GF  +  +C VL ++ V+A+    A ++  + 
Sbjct: 43  PEVAGRVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEE 102

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L+   F PN       I   C++G +++AF    ++KE GV                   
Sbjct: 103 LEPLCF-PNEIMYTTVINGFCKAGQVDQAFELLDEMKERGV------------------- 142

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
                    D++    LIQ  C  G++ E  E  + + E+   P    +N +++  C+  
Sbjct: 143 -------KMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEE-CSPNVITYNTVVNGLCKAN 194

Query: 249 NFGRVSELLHTMVARNRA-----PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
                 EL   M  R  A     PD  +Y  VI+ LCK+++  +AY  F  ++  G  P+
Sbjct: 195 RIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPN 254

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y+++I GLCK+    +  ++   M  KG   N   +N+M+H   + D  E+A +  +
Sbjct: 255 VVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFE 314

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +L  G     VTYN  + GLC  GR DEAY +  EM +  +  DVITY+++I G+CK G
Sbjct: 315 RLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAG 374

Query: 424 KI 425
           ++
Sbjct: 375 RM 376



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/340 (23%), Positives = 155/340 (45%), Gaps = 17/340 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD--------STGFSPNPNSLELYIQCLCESGLI 154
           SP++++ N + + L +A     A++  D        S G  P+  S    I  LC++  +
Sbjct: 177 SPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRV 236

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++A+  F +++ +G   ++ T++S + G  K+DR     +L   + E G+         +
Sbjct: 237 DKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAM 296

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + A   + +  +  +   ++L+ G  P    +N  +   C+         +L  MV    
Sbjct: 297 LHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKV 356

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+G CK+ +  +A  VF  +     +P  V + T++HG  +     +A +
Sbjct: 357 TPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFR 416

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M++ G +P   TYN ++   C  D++E A  ++ +M  K       TY  LI  LC
Sbjct: 417 VHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLC 476

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              R DEA    + M    +  +    + L++  CK+G++
Sbjct: 477 RARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEV 516



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/423 (21%), Positives = 170/423 (40%), Gaps = 49/423 (11%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLF--FREFLKQQNNVLLSIRFFQWLH 97
           Y+ +   +CK+ R     E  L      F  N   F      L + +    + +FF+ L 
Sbjct: 258 YSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLL 317

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
              G  P++V+ NV    L +A     A+++ ++ ++S   +P+  +    I   C++G 
Sbjct: 318 KS-GKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK-VTPDVITYSSIIDGFCKAGR 375

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           +++A   F+++          T+ + L G  +  ++   ++++ D++ +G+         
Sbjct: 376 MDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNV 435

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C    V    E+  ++      P+   +  LI   C  +      E L  M A N
Sbjct: 436 LMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADN 495

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFND------------------------------ 294
             P+      ++  LCK  +  EA  V ++                              
Sbjct: 496 VVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAAS 555

Query: 295 --LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
             L+  G+V D   Y+  +  +CK G   +A ++  +M+ KG+ P+E TY +++   C +
Sbjct: 556 KLLRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGL 615

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           D +E A    ++M  +G     VTY  LI   C     DEA+ +FE M   G      T 
Sbjct: 616 DRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTM 675

Query: 413 NTL 415
            TL
Sbjct: 676 RTL 678



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 154/365 (42%), Gaps = 46/365 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  +++  N +  +L +    + A  F +    +G  PN  +  + +  LC++G ++EA
Sbjct: 285 GFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWK--LYHDLIESGY----LIQA 208
           +    ++ E  V   + T++S + G  K   +D+ D V+   + H+ I        L+  
Sbjct: 345 YRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHG 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F    K  E + +   ++  G +P    +N L+   C   +     E+ H M  + R PD
Sbjct: 405 FSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPD 464

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA----- 323
             TY  +I  LC++R+  EA    + ++    VP+  +   ++  LCK G + +A     
Sbjct: 465 CNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLD 524

Query: 324 -----------------------RKMWFEMIHK-----GLLPNEYTYNSMIHGYCRIDNL 355
                                  RK W E   K     G + +  TY+  +   C+    
Sbjct: 525 NVVEVGCQPLGETFKILVEELYLRKKW-EAASKLLRSPGFVADAATYSLCVAEICKAGKP 583

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           +EA  + ++M+ KG      TY  ++  LC   R + A   FE+MA +G    ++TY  L
Sbjct: 584 DEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYTLL 643

Query: 416 IQGYC 420
           I   C
Sbjct: 644 IGEAC 648



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 80/376 (21%), Positives = 153/376 (40%), Gaps = 51/376 (13%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCL 148
           +F+ + +  G +P++V+ + L D L +       ++ L      GF  N       +  L
Sbjct: 242 YFKRMRA-VGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHAL 300

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------ 202
            ++   E+A   F +L + G   ++ T+N A+ G  K  R D  +++  +++ES      
Sbjct: 301 WKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDV 360

Query: 203 ---GYLIQAFCNDGKVS-----------------------------------EGYELLRQ 224
                +I  FC  G++                                    E + +   
Sbjct: 361 ITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHED 420

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++  G +P    +N L+   C   +     E+ H M  + R PD  TY  +I  LC++R+
Sbjct: 421 MVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARR 480

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             EA    + ++    VP+  +   ++  LCK G + +A  +   ++  G  P   T+  
Sbjct: 481 VDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKI 540

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++         E A +L   +   G+     TY+  +A +C  G+ DEA  + E+M  KG
Sbjct: 541 LVEELYLRKKWEAASKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKG 597

Query: 405 IFRDVITYNTLIQGYC 420
           +  D  TY  +++  C
Sbjct: 598 VRPDEGTYVAVLRSLC 613



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 53/231 (22%), Positives = 89/231 (38%), Gaps = 21/231 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD  +   L   L  AR    A +FLD   +    PN       ++ LC+ G ++EA   
Sbjct: 463 PDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSV 522

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDL--VWKLYHDLIES-GYLIQA--------- 208
              + E+G     +T+       I ++   L   W+    L+ S G++  A         
Sbjct: 523 LDNVVEVGCQPLGETFK------ILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAE 576

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK  E  E++ Q++  G+ P+   +  ++   C              M +R  AP 
Sbjct: 577 ICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPG 636

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
             TY  +I   C +    EA+R+F  +   G+ P      T+   L   G+
Sbjct: 637 LVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTLSSCLRDAGY 687


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 154/292 (52%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   F   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 73  ITAYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ + +         
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  EA+ +F+++ E+G VP+ V +TT+I G C
Sbjct: 193 LKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G L  A +++ +++ +GL P+  TYN++I+G+C+  +L++ + L  EM  KG     +
Sbjct: 253 KNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   ++M ++ I  D + Y  LI G CKEG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVD 364



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 78/187 (41%), Gaps = 30/187 (16%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELY 144
           L++  ++ + S  G SPDL++ N L     +    K   D +D     G  P+  +    
Sbjct: 259 LAMEIYKQILSQ-GLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTL 317

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C+ G +E AF    K+ E                 I++D  D+V+           
Sbjct: 318 IDGSCKEGDLETAFEYRKKMIEEN---------------IRLD--DVVYTA--------- 351

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C +G+  +  ++LR++L  GL P++  +  +++ FC+  +    S+LL  M    
Sbjct: 352 LISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDG 411

Query: 265 RAPDNFT 271
             P   T
Sbjct: 412 HVPSVVT 418


>gi|225427506|ref|XP_002263778.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g31840-like [Vitis vinifera]
          Length = 1131

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 186/374 (49%), Gaps = 27/374 (7%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           +P+ F    + ++N   ++RFF+W  +  G    + S   +   L+  R F  A    D 
Sbjct: 59  EPVVF----QLRSNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDR 114

Query: 132 T------------------GFSPNPNSL-ELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
                               +  NP+++    + C C +G+++ A   F+ + +MGV  S
Sbjct: 115 MVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSIS 174

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIES----GYLIQAFCNDGKVSEGYELLRQVLED 228
               +  L   I  DR D++ + Y ++ +      ++  +F   G+V +G    R ++E 
Sbjct: 175 HYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVER 234

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           GLVP+    NK++   C     G  S+    MV    +P+  T+  +IN  CK  +  EA
Sbjct: 235 GLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEA 294

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           + ++N + E+G VPD V+Y+ +I+GL + G L +   ++   + +G+  +   ++S++  
Sbjct: 295 FSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDA 354

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           Y R+ +L +A  ++  ML +G     VTY+ LI GLC +GR  EA  +F ++ ++G+   
Sbjct: 355 YVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPS 414

Query: 409 VITYNTLIQGYCKE 422
           V+TY++LI G+CK 
Sbjct: 415 VLTYSSLIDGFCKS 428



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 94/399 (23%), Positives = 172/399 (43%), Gaps = 49/399 (12%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---ST 132
           F  FLK+   V   + F + L    G  P +V CN +   L       VA DF D    +
Sbjct: 212 FNSFLKR-GEVEKGLNFHRALVER-GLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRS 269

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD-- 190
           G SPN  +    I   C+   ++EAF  ++ + E G+   +  ++  + G  +  + +  
Sbjct: 270 GPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEG 329

Query: 191 -------LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
                  L   +  D++    ++ A+   G + +  E+  ++L++G+ P    ++ LI+ 
Sbjct: 330 NSLFSMALARGVKMDVVIFSSIMDAYVRVGDLGKAIEVYTRMLKEGISPNVVTYSILING 389

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C          +   ++ +   P   TY  +I+G CKS    + + ++  +  +G+VPD
Sbjct: 390 LCRNGRVLEACGVFGQILKQGLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPD 449

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI----------- 352
            V+ + +I+GL + G + +A + +F+ + +GL  N Y +N++I G  R+           
Sbjct: 450 VVVCSMLINGLSRQGMMDEALRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYI 509

Query: 353 ------------------------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
                                     L+EA  L  ++L KG+    + Y TLI G C   
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
                  +F+ M   GIF D+  YN LI  + +EG + N
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYNVLINMFFREGCVEN 608



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +++ + L D   ++   +        +   G  P+     + I  L   G+++EA
Sbjct: 410 GLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEA 469

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
              F +  + G+  +   +N+ + GC ++ RT    K+Y          D++    L++ 
Sbjct: 470 LRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKG 529

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN------------------- 249
               G++ E   L  Q+L+ G  P++  +  LI  FC+K++                   
Sbjct: 530 LAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPD 589

Query: 250 ----------FGR------VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                     F R      V ELL  ++     PD  TY  +I G C  +   +A ++F 
Sbjct: 590 ICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFE 649

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            LK     P+ + +T +I   CK G + DA  ++  M+ +G  PN  TY+ +I GY + +
Sbjct: 650 VLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTE 709

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           N E A  L+++ML        V+Y+ LI GLC  G  +EA   F+    + +  DVI Y 
Sbjct: 710 NTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYG 769

Query: 414 TLIQGYCKEGKI 425
            LI+GYCK G++
Sbjct: 770 ILIRGYCKVGRL 781



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/325 (24%), Positives = 134/325 (41%), Gaps = 29/325 (8%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESG 152
           L   Y   PD+V+  VL   L E      A+     L   GFSP+       I   C+  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
                   F  ++  G+F  I  +N                           LI  F  +
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYN--------------------------VLINMFFRE 603

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G V    ELLR++++ GL P+   +N +I  +C  K F +  +L   +      P+  T+
Sbjct: 604 GCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITF 663

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+  CK  +  +A  +F+ + ERG  P+ + Y+ +I G  K      A +++ +M+ 
Sbjct: 664 TILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLG 723

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
             + PN  +Y+ +I G C+   +EEA    +  + +      + Y  LI G C  GR  E
Sbjct: 724 DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAE 783

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L++ M   GI  D +    L +
Sbjct: 784 AMMLYDHMLVNGIMPDDLLQKALAE 808



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +L+  +C +G V    +    + + G+   + A ++++    +      + E    M   
Sbjct: 145 FLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEMCKG 204

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
                   YE V N   K  +  +       L ERG VP  V    ++ GLC    +G A
Sbjct: 205 LG-----VYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVA 259

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              +  M+  G  PN  T++++I+ YC+   L+EA  L+  M++KG     V Y+ LI G
Sbjct: 260 SDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILING 319

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L   G+ +E   LF     +G+  DV+ +++++  Y + G +
Sbjct: 320 LFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDL 361



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 102/249 (40%), Gaps = 35/249 (14%)

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
           +  DI  +N    +FFRE   +  NVL  +R        YG  PD+V+ N +       +
Sbjct: 586 IFPDICIYNVLINMFFREGCVE--NVLELLREI----IKYGLEPDIVTYNTMICGYCSLK 639

Query: 121 AFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
            F  A+   + L      PN  +  + I   C+ G +++A   FS + E G   +I T++
Sbjct: 640 IFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYS 699

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
             + G  K + T+  ++LY                           ++L D + P   ++
Sbjct: 700 CLIDGYFKTENTESAFELYE--------------------------KMLGDRVSPNIVSY 733

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           + LI   C+K      S      + R+  PD   Y  +I G CK  +  EA  +++ +  
Sbjct: 734 SILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLV 793

Query: 298 RGYVPDTVM 306
            G +PD ++
Sbjct: 794 NGIMPDDLL 802


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/339 (31%), Positives = 169/339 (49%), Gaps = 23/339 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P + +  VL  +L  +     A++    ++  G  PN ++  + I  LC    +E+A   
Sbjct: 321 PTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKAREL 380

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKLYHDLIES----------GYLI 206
             ++ E G+  ++ T+N+ + G  K     D  D+V     +L+ES            LI
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVV-----ELMESRNLRPNTRTYNELI 435

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           + +C    V +   +L ++LE  ++P+   +N LI   C   NF     LL  M  R   
Sbjct: 436 KGYCKRN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLV 494

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD +TY  +I+ LCKS++  EA  +F+ L+++  +P+ VMYT +I G CK G + +A  M
Sbjct: 495 PDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLM 554

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+ K  LPN  T+N++IHG C    L+EA  L ++M+      T  T   LI  L  
Sbjct: 555 LEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLK 614

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  D AY  F++M   G   D  TY T IQ YC+EG++
Sbjct: 615 DGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRL 653



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 127/245 (51%), Gaps = 3/245 (1%)

Query: 183 CIKIDRTDLVWKLYHDLIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           C K+++ D  ++L + LI   Y  L+ +    G V E  ++  ++LED + P    +NK+
Sbjct: 166 CRKMNK-DESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKM 224

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++ +C+  N    ++ +  +V     PD FTY  +I G C+ +    A++VF ++  +G 
Sbjct: 225 VNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGC 284

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
             + V YT +IHGLC    + +A  ++ +M      P   TY  +I   C  +   EA  
Sbjct: 285 RRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALN 344

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L KEM +KG      TY  LI  LC   + ++A  L  +M +KG+  +VITYN LI GYC
Sbjct: 345 LVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYC 404

Query: 421 KEGKI 425
           K G I
Sbjct: 405 KRGMI 409



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 106/423 (25%), Positives = 188/423 (44%), Gaps = 40/423 (9%)

Query: 17  RNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQ--TLLSDIPSFNFNDPL 74
           R F + +  +RNL     E +   T +  ++  I  +KP W +  +L S +P+ +   P 
Sbjct: 40  RQFCSVSPLIRNLP----EDESDPTSVPHRLFSIL-SKPNWHKCPSLKSMVPAIS---PS 91

Query: 75  FFREFLKQQNNVLLSIRFFQWL-------HSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
                     +   ++ F  W+       HS Y ++  L    +L ++      FK+ + 
Sbjct: 92  HVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLL---TLLINNGYVGVVFKIRLL 148

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            + S     +     L++  LC     +E+F    +LK   + G    +N+ L    +  
Sbjct: 149 MIKSCDSVAD----TLFVLDLCRKMNKDESF----ELKYKLIIG---CYNTLLNSLARFG 197

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             D + ++Y +++E            ++  +C  G V E  + +  ++E GL P+   + 
Sbjct: 198 LVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYT 257

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI  +C++K+     ++   M  +    +   Y  +I+GLC  R+  EA  +F  +K+ 
Sbjct: 258 SLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDD 317

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
              P    YT +I  LC      +A  +  EM  KG+ PN +TY  +I   C    LE+A
Sbjct: 318 DCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKA 377

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           + L  +ML+KG     +TYN LI G C  G  ++A  + E M  + +  +  TYN LI+G
Sbjct: 378 RELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKG 437

Query: 419 YCK 421
           YCK
Sbjct: 438 YCK 440



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 154/363 (42%), Gaps = 46/363 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +  VL DSL      + A + L      G  PN  +    I   C+ G+IE+A
Sbjct: 353 GIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDA 412

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK--------IDRTDLVWKLYHDLIESGYLIQAF 209
                 ++   +  + +T+N  + G  K        +    L  K+  D++    LI   
Sbjct: 413 LDVVELMESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQ 472

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G     Y LL  + + GLVP+   +  +I   C+ K      +L  ++  ++  P+ 
Sbjct: 473 CRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNV 532

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL--------- 320
             Y  +I+G CK+ K  EA+ +   +  +  +P+++ +  +IHGLC  G L         
Sbjct: 533 VMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEK 592

Query: 321 -----------------------GD---ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
                                  GD   A + + +M+  G  P+ +TY + I  YCR   
Sbjct: 593 MVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGR 652

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L++A+ +  +M + G      TY++LI G    GRT+ A+ + + M   G      T+ +
Sbjct: 653 LQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLS 712

Query: 415 LIQ 417
           LI+
Sbjct: 713 LIK 715



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 141/343 (41%), Gaps = 47/343 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D    +  F  A   +  ++  G  P+P +    I  LC+S  +EEA   
Sbjct: 460 PDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDL 519

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           F  L++  V  ++  + +                          LI  +C  GKV+E + 
Sbjct: 520 FDSLEQKDVIPNVVMYTA--------------------------LIDGYCKAGKVNEAHL 553

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +L ++L    +P +  FN LI   C        + L   MV  +  P   T   +I+ L 
Sbjct: 554 MLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLL 613

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K      AYR F  +   G  PD   YTT I   C+ G L DA  M  +M   G+ P+ +
Sbjct: 614 KDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLF 673

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI---------------AGLC 385
           TY+S+I GY  +     A  + K M D G   +  T+ +LI                G+C
Sbjct: 674 TYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYGKVKGGEPGVC 733

Query: 386 LHGRT---DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +       D    L E+M + G+  +  +Y  L+ G C+ G +
Sbjct: 734 VMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNL 776



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/475 (20%), Positives = 173/475 (36%), Gaps = 90/475 (18%)

Query: 27  RNLSIETKESQQLYTEIAKQVCKITRTKPR------WEQTLLSDIPSFNFNDPLFFREFL 80
           RNL   T+     Y E+ K  CK    K         E+ +L D+ ++N        +  
Sbjct: 422 RNLRPNTRT----YNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNS-----LIDGQ 472

Query: 81  KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPN 137
            +  N   + R    ++   G  PD  +   + DSL +++  + A D  DS       PN
Sbjct: 473 CRSGNFDSAYRLLSLMNDR-GLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPN 531

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI------------- 184
                  I   C++G + EA     K+       +  T+N+ + G               
Sbjct: 532 VVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEE 591

Query: 185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           K+ + DL   +  D I    LI     DG     Y   +Q+L  G  P+   +   I  +
Sbjct: 592 KMVKIDLQPTVSTDTI----LIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTY 647

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN--------------------------- 277
           C +       +++  M     +PD FTY  +I                            
Sbjct: 648 CREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQ 707

Query: 278 -----------------------GLCKSRKRLE---AYRVFNDLKERGYVPDTVMYTTVI 311
                                  G+C     +E      +   + E G  P+   Y  ++
Sbjct: 708 HTFLSLIKHLLEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLM 767

Query: 312 HGLCKMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
            G+C++G L  A K++  M  K G+ P+E  +N+++   C+++   EA ++  +M+  G+
Sbjct: 768 LGICEIGNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGH 827

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                +   LI  L   G  +    +F+ + Q G + D + +  +I G  K+G +
Sbjct: 828 LPQLESCKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLV 882



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 135/310 (43%), Gaps = 51/310 (16%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S+G  P+ ++   +IQ  C  G +++A    +K+KE GV   + T++S + G        
Sbjct: 630 SSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKG-------- 681

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK-- 248
                Y DL             G+ +  + +L+++ + G  P    F  LI    E K  
Sbjct: 682 -----YGDL-------------GRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEMKYG 723

Query: 249 ----------------NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
                            F  V ELL  MV     P+  +YE+++ G+C+      A +VF
Sbjct: 724 KVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVF 783

Query: 293 NDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           + ++++ G  P  +++  ++   CK+    +A K+  +MI  G LP   +   +I   CR
Sbjct: 784 DHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILI---CR 840

Query: 352 IDNLEEAKR---LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +    E +R   + + +L  GY +  + +  +I G+   G  +  Y LF  M + G    
Sbjct: 841 LYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFS 900

Query: 409 VITYNTLIQG 418
             TY+ LI+G
Sbjct: 901 SQTYSLLIEG 910


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+  +L ++  +   +K AM  LD     G +P+  +  + +  +C+ G +++A   
Sbjct: 65  PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 124

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              L   G   +  ++N  L G    +R +   +L  ++ + G          LI   C 
Sbjct: 125 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 184

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G V    E+L Q+ + G  P + ++N L+  FC++K   +    L  MV+R   PD  +
Sbjct: 185 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 244

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LC+S +   A  + + LK++G  P  + Y TVI GL K G   +A ++  EM+
Sbjct: 245 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 304

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY+++  G CR D +E+A R   ++ D G    TV YN +I GLC    T 
Sbjct: 305 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 364

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  LF  M   G   +  TY  LI+G   EG I
Sbjct: 365 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 398



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 142/326 (43%), Gaps = 30/326 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  +I F + L S YG  P+ VS N++   L  A  ++ A   M  +   G  PN 
Sbjct: 114 QEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 172

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  LC  GL+E A     ++ + G   +  ++N                     
Sbjct: 173 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNP-------------------- 212

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+ AFC   K+ +    L  ++  G  P+  ++N L++  C         ELLH
Sbjct: 213 ------LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 266

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +  AP   +Y  VI+GL K+ K  EA  + N++  +G  PD + Y+T+  GLC+  
Sbjct: 267 QLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 326

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + DA + + ++   G+ PN   YN++I G C+      A  L   M+  G      TY 
Sbjct: 327 RIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 386

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKG 404
            LI GL   G   EA  L +E+  + 
Sbjct: 387 ILIEGLAYEGLIKEARDLLDELCSRA 412



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+  C  G+ +    +L ++L    VP+   +  L+   C++  + +  +LL  M  + 
Sbjct: 38  LIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 97

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  V+NG+C+  +  +A     +L   G  P+TV Y  V+ GLC      DA 
Sbjct: 98  CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 157

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM  KG  PN  T+N +I   CR   +E A  + +++   G    +++YN L+   
Sbjct: 158 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 217

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   + D+A    + M  +G + D+++YNTL+   C+ G++
Sbjct: 218 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 258



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 111/221 (50%), Gaps = 3/221 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++  +C  G++       R V E  + P+   +N LI   C +        +L  M+ R 
Sbjct: 6   MVAGYCGAGQLDAAR---RLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRR 62

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  ++   CK     +A ++ ++++++G  PD V Y  V++G+C+ G + DA 
Sbjct: 63  CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAI 122

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +    +   G  PN  +YN ++ G C  +  E+A+ L  EM  KG     VT+N LI+ L
Sbjct: 123 EFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFL 182

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G  + A  + E++ + G   + ++YN L+  +CK+ K+
Sbjct: 183 CRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 223



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  ++ G C  G L  AR++  EM  +   P+ YTYN++I G C       A  +  EML
Sbjct: 3   YNAMVAGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEML 59

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +      VTY  L+   C      +A  L +EM  KG   D++TYN ++ G C+EG++
Sbjct: 60  RRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRV 118



 Score = 45.1 bits (105), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + YN ++AG C  G+ D A  L  EM    +  D  TYNTLI+G C  G+  N
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTAN 50


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 156/341 (45%), Gaps = 13/341 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           R F  L    G S  +V+ N + +    A   + A   +    F P+  +    I+ LC 
Sbjct: 119 RVFATL----GASATVVTYNTMVNGYCRAGRIEDARRLISGMPFPPDTFTFNPLIRALCV 174

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID--RTDLVW-------KLYHDLIE 201
            G + +A   F  +   G   S+ T++  L    K    R  +V            D++ 
Sbjct: 175 RGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVT 234

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI A CN+G V E   +L  +   G  P+   +  ++   C  + +  V EL   M 
Sbjct: 235 YNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMA 294

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +   APD  T+  ++  LC+      A +V + + E G +PD V Y++++ GLC +G + 
Sbjct: 295 SNKCAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVD 354

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA ++   +   G  P+   Y +++ G C I+  E A+ L  EM+        VT+NT+I
Sbjct: 355 DAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVI 414

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           A LC  G  D A  + E+M++ G   D++TYN++I G C E
Sbjct: 415 ASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNE 455



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 181/436 (41%), Gaps = 57/436 (13%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIP----SFNFNDPLFFREFLKQQNNVLLSIRFFQW 95
           Y  +    C+  R +    + L+S +P    +F FN PL     ++ +    L++ F   
Sbjct: 133 YNTMVNGYCRAGRIED--ARRLISGMPFPPDTFTFN-PLIRALCVRGRVPDALAV-FDDM 188

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESG 152
           LH   G SP +V+ ++L D+  +A  ++ AM  LD   + G  P+  +  + I  +C  G
Sbjct: 189 LH--RGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEG 246

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------------- 197
            ++EA    S L   G      T+   L      +R   V +L+                
Sbjct: 247 DVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFN 306

Query: 198 -----------------------------DLIESGYLIQAFCNDGKVSEGYELLRQVLED 228
                                        D++    ++   C+ G+V +  ELL ++   
Sbjct: 307 TIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSY 366

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P+  A+  ++   C  + +    EL+  MV  +  PD  T+  VI  LC+      A
Sbjct: 367 GCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRA 426

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +V   + E G  PD V Y ++I GLC    + DA ++   +   G  P+  T+N+++ G
Sbjct: 427 IKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKG 486

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C +D  E+A++L   M+         T+NT+I  LC  G   +A    + MA+ G   +
Sbjct: 487 LCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPN 546

Query: 409 VITYNTLIQGYCKEGK 424
             TYN ++    K GK
Sbjct: 547 QSTYNIVVDALLKAGK 562



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 159/355 (44%), Gaps = 15/355 (4%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPN 139
           + +V  ++     L SH G  PD V+   +  SL  +  +K   +    + S   +P+  
Sbjct: 245 EGDVDEALNILSDLPSH-GCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEV 303

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-- 197
           +    +  LC+ GL++ A      + E G    I T++S L G   + R D   +L    
Sbjct: 304 TFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRL 363

Query: 198 -------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                  D I    +++  C+  +     EL+ +++     P+   FN +I+  C+K   
Sbjct: 364 KSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLV 423

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            R  +++  M      PD  TY  +I+GLC  R   +A  + ++L+  G  PD V + T+
Sbjct: 424 DRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTL 483

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           + GLC +    DA ++   M+H    P+  T+N++I   C+   L +A    K M + G 
Sbjct: 484 LKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGC 543

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                TYN ++  L   G+T EA  L   M       D+ITYNT+I    K GK+
Sbjct: 544 IPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKM 596



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 152/347 (43%), Gaps = 17/347 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYI 145
           ++     L S YG  PD ++   +   L     ++ A + +     S   P+  +    I
Sbjct: 356 AVELLSRLKS-YGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVI 414

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-----CIKIDRTDLVWKLYH--- 197
             LC+ GL++ A     ++ E G    I T+NS + G     CI  D  +L+  L     
Sbjct: 415 ASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCID-DAMELLSNLQSYGC 473

Query: 198 --DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D++    L++  C+  +  +  +L+  ++     P+ T FN +I+  C+K    +  E
Sbjct: 474 KPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIE 533

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
            L  M      P+  TY  V++ L K+ K  EA ++ + +      PD + Y TVI  + 
Sbjct: 534 TLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNIT 591

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + +A  +   M+  GL P+  TY S+ +G CR D  + A R+   + D G      
Sbjct: 592 KAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDAT 651

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            YN ++ G C + RTD A   F  M   G   D  TY  L++    E
Sbjct: 652 FYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTYIILLEALAYE 698



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 164/389 (42%), Gaps = 33/389 (8%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRFFQWLHS 98
           Y+ I   +C + R     E  LLS + S+    D + +   LK     L SI   QW H+
Sbjct: 340 YSSILDGLCDVGRVDDAVE--LLSRLKSYGCKPDTIAYTTVLKG----LCSIE--QWEHA 391

Query: 99  HYGFS--------PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQ 146
               +        PD V+ N +  SL +     RA KV ++ +   G +P+  +    I 
Sbjct: 392 EELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAIKV-VEQMSENGCNPDIVTYNSIID 450

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---- 202
            LC    I++A    S L+  G    I T+N+ L G   +DR +   +L  +++ S    
Sbjct: 451 GLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPP 510

Query: 203 -----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  +I + C  G + +  E L+ + E+G +P  + +N ++    +        +LL
Sbjct: 511 DATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLL 570

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M   N  PD  TY  VI+ + K+ K  EA  +   +   G  PDT+ Y ++ +G+C+ 
Sbjct: 571 SGMT--NGTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICRE 628

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
                A +M   +   GL P+   YN ++ G+C+    + A      M+  G      TY
Sbjct: 629 DGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTY 688

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
             L+  L      DEA  L   +   G+ 
Sbjct: 689 IILLEALAYECLLDEAKQLLVNLCSLGVL 717



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/183 (28%), Positives = 89/183 (48%), Gaps = 6/183 (3%)

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N LI R C     GRV++          +    TY  ++NG C++ +  +A R+ + +  
Sbjct: 102 NILIKRLCSG---GRVADAERVFATLGASATVVTYNTMVNGYCRAGRIEDARRLISGMP- 157

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
             + PDT  +  +I  LC  G + DA  ++ +M+H+G  P+  TY+ ++   C+     +
Sbjct: 158 --FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATCKASGYRQ 215

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L  EM  KG     VTYN LI  +C  G  DEA ++  ++   G   D +TY  +++
Sbjct: 216 AMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLK 275

Query: 418 GYC 420
             C
Sbjct: 276 SLC 278



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           V  N LI  LC  GR  +A  +F   A  G    V+TYNT++ GYC+ G+I
Sbjct: 99  VPCNILIKRLCSGGRVADAERVF---ATLGASATVVTYNTMVNGYCRAGRI 146


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 186/443 (41%), Gaps = 117/443 (26%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNS---------------- 140
           Y  SPD V+ N + D+L +      A D L    S G  PN N+                
Sbjct: 237 YNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKE 296

Query: 141 ----LELYIQ---------------CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
               +EL  Q                LC  G IEEAF    +++ + +   + ++N+ + 
Sbjct: 297 AANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLIN 356

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           GC++  +    +KL  ++ E G          +++ +C +GK+ +    + ++ E G  P
Sbjct: 357 GCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSP 416

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +N LI+ +C+  N G     +  M  +N   D+ T   ++  LC+ +K  EAY++ 
Sbjct: 417 DCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLL 476

Query: 293 NDLKERGY-----------------------------------VPDTVMYTTVIHGLCKM 317
           +  ++RGY                                   +P TV Y  +I GLC+ 
Sbjct: 477 SSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQC 536

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD---------- 367
           G    A     E++  GLLP+E TYN+++HGYCR  ++E+A + H +M++          
Sbjct: 537 GKTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTC 596

Query: 368 -------------------------KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
                                    KG    TVTYNTLI  LC  GR D+A++L  EM +
Sbjct: 597 NILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEE 656

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           K +  D  TYN +I      G+I
Sbjct: 657 KELGPDHYTYNAIITALTDSGRI 679



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 146/291 (50%), Gaps = 23/291 (7%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           SP+   L+  I    +SG    AF  F K+K + +  ++ T N+ L   ++         
Sbjct: 132 SPSKALLDTAIGAYVQSGQPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVR--------- 182

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                         + +   VS   E     ++ G+VP    FN +I  +C +  F    
Sbjct: 183 --------------YPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAV 228

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           E L+ M   N +PDN TY  +++ LCK  +  +A  +  D+K RG +P+   Y  +++G 
Sbjct: 229 EFLNVMGKYNCSPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGY 288

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CKMGWL +A  +   M    LLP+ +TYN +I+G C    +EEA +L  EM +       
Sbjct: 289 CKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDV 348

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           V+YNTLI G     +  EA+ L EEM++KG+  + +T+N +++ YCKEGK+
Sbjct: 349 VSYNTLINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKM 399



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 161/331 (48%), Gaps = 38/331 (11%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           P+L++CN L +SLV                  P+ +S+    +             AF+ 
Sbjct: 168 PNLLTCNTLLNSLVRY----------------PSSHSVSFSRE-------------AFND 198

Query: 164 LKEMGVFGSIKTWNSALLG-CIKIDRTDLV--------WKLYHDLIESGYLIQAFCNDGK 214
             ++G+  ++ T+N  + G C++    D V        +    D +    ++ A C  G+
Sbjct: 199 AIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNCSPDNVTYNTILDALCKKGR 258

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + +  +LL  +   GL+P    +N L+  +C+       + ++  M   N  PD +TY  
Sbjct: 259 LGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNM 318

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +INGLC   +  EA+++ ++++    +PD V Y T+I+G  +   + +A K+  EM  KG
Sbjct: 319 LINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEWSKISEAFKLLEEMSEKG 378

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + PN  T+N M+  YC+   +++A     +M + G+    VTYNTLI G C  G   EA+
Sbjct: 379 VKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGNMGEAF 438

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +EM +K +  D +T NT+++  C+E K+
Sbjct: 439 RTMDEMGRKNMKMDSVTLNTILRTLCREKKL 469



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 131/308 (42%), Gaps = 31/308 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GFSPD V+ N L +   +A     AF+  MD +       +  +L   ++ LC    +EE
Sbjct: 413 GFSPDCVTYNTLINGYCKAGNMGEAFR-TMDEMGRKNMKMDSVTLNTILRTLCREKKLEE 471

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A+   S  ++ G F                           D +  G LI  +  DG V 
Sbjct: 472 AYKLLSSARKRGYF--------------------------IDEVSYGTLIVGYFKDGNVD 505

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
              +L  ++ E  ++P    +N +I   C+     +    L+ ++     PD  TY  ++
Sbjct: 506 RALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNTIL 565

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G C+     +A++  N + E  + PD      ++ GLC  G L  A K++   + KG  
Sbjct: 566 HGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKA 625

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            +  TYN++I   C+   L++A  L  EM +K  G    TYN +I  L   GR  EA   
Sbjct: 626 IDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEF 685

Query: 397 FEEMAQKG 404
             +M +KG
Sbjct: 686 MSKMLEKG 693


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 173/343 (50%), Gaps = 18/343 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTG-----FSPNPNSLELYIQCLCES 151
           G +PD+V+   L   L        A K+  + L+          PN  +  + +  LC+ 
Sbjct: 169 GCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKV 228

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------- 203
           G  +EA   F ++K  G+  SI ++NS + G     + +   +L  ++++ G        
Sbjct: 229 GREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTF 288

Query: 204 -YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI   C +GKV E  +LL  ++E G+VP+   +N LI  FC   +     EL  +M +
Sbjct: 289 NVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPS 348

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   PD  +Y  +ING  K+ K  EA +++N++   G  P+ + Y +++ G+   G + D
Sbjct: 349 KGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDD 408

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A+K++  M   G+  N YTY   + G C+ D L EA +L  E+    +       N LI 
Sbjct: 409 AKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLID 468

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC  G+ + A+ LFE+++ +G   +V+TY  +I G+C+EG++
Sbjct: 469 GLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQV 511



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 178/412 (43%), Gaps = 54/412 (13%)

Query: 63  SDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           S IPS N     F R           ++ FF  +      +P L S N L   L + + +
Sbjct: 27  SAIPSPNPQIAFFLRHCKTGNVTATHALHFFHLMMRSTP-TPSLSSFNHLLSGLAKIKHY 85

Query: 123 KVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
                  +    +G S +  +L + + CLC    + E F AF+ +   G   +I T+N+ 
Sbjct: 86  SQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTL 145

Query: 180 LLGCIKIDRTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELLRQVLED-- 228
           + G     R     +L+          D++  G LI+  C  G ++   +L +++L D  
Sbjct: 146 IKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDIS 205

Query: 229 ---------------------------------------GLVPENTAFNKLISRFCEKKN 249
                                                  G++P   ++N LI  FC    
Sbjct: 206 RYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGK 265

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
           +     LL  M+ +   PD  T+  +I+ LCK  K +EA ++   + E G VPD V Y +
Sbjct: 266 WEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNS 325

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G C +G L  AR+++  M  KG  P+  +YN +I+GY +   +EEA +L+ EML  G
Sbjct: 326 LIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVG 385

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                +TY++L+ G+ L G+ D+A  LF  M   GI  +  TY   + G CK
Sbjct: 386 KRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCK 437



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 114/223 (51%), Gaps = 8/223 (3%)

Query: 210 CNDGKVSEGYEL--LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           C  G V+  + L     ++     P  ++FN L+S   + K++ +V  L + M     + 
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T   ++N LC   +  E +  F  +  RGY P+ V Y T+I GLC    + +A +++
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK------GYGETTVTYNTLI 381
             M   G  P+  TY ++I G C   N+  A +LH+EML+             +TYN ++
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            GLC  GR DEA  LFEEM  +G+   +I+YN+LI G+C  GK
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGK 265



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 72/229 (31%), Positives = 118/229 (51%), Gaps = 6/229 (2%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +L+         S+ + L  Q+   GL  +    N L++  C              ++ R
Sbjct: 74  HLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRR 133

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             +P+  TY  +I GLC   +  EA R+F  +++ G  PD V Y T+I GLC  G +  A
Sbjct: 134 GYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIA 193

Query: 324 RKMWFEMIHK------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
            K+  EM++          PN  TYN ++ G C++   +EAK+L +EM  +G   + ++Y
Sbjct: 194 LKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISY 253

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           N+LI G C  G+ +E+  L +EM  +G+  D++T+N LI   CKEGK++
Sbjct: 254 NSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVI 302



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 152/336 (45%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P ++S N L      A  ++ +   LD     G  P+  +  + I  LC+ G + EA
Sbjct: 245 GMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEA 304

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
                 + E G+   + T+NS + G   +   +   +L+          D+I    LI  
Sbjct: 305 KKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLING 364

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +    KV E  +L  ++L  G  P    ++ L+             +L   M A   A +
Sbjct: 365 YSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAEN 424

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           ++TY   ++GLCK+    EA ++F +LK   +  +      +I GLCK G L  A +++ 
Sbjct: 425 SYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLETAWELFE 484

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++ ++G  PN  TY  MIHG+CR   +++A  L ++M   G     +TYNTL+ G     
Sbjct: 485 KLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESN 544

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + +E   L   MAQK +  D IT + ++    K+ K
Sbjct: 545 KLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEK 580



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 19/326 (5%)

Query: 101 GFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+V+ NVL D+L      +EA+     +  +  +G  P+  +    I+  C  G +
Sbjct: 280 GLQPDMVTFNVLIDTLCKEGKVIEAKKL---LGVMIESGIVPDLVTYNSLIEGFCMVGDL 336

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
             A   F  +   G    + ++N  + G  K  + +   KLY++++  G          L
Sbjct: 337 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 396

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++     GKV +  +L   +   G+   +  +   +   C+        +L   + + N 
Sbjct: 397 LKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNF 456

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +      +I+GLCK+ K   A+ +F  L   G+ P+ V YT +IHG C+ G +  A  
Sbjct: 457 KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 516

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M   G  P+  TYN+++ G+   + LEE  +L   M  K      +T + ++  L 
Sbjct: 517 LIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLS 576

Query: 386 LHGRTDEAYHLFEEMA-QKGIFRDVI 410
              +  E  HL      QKG+ + ++
Sbjct: 577 KDEKYQECLHLLPRFPIQKGVDKHLL 602



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 66/138 (47%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A   F+ +      P    +  ++ GL K+        ++ +M   GL  +  T N +++
Sbjct: 53  ALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLN 112

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C ++ L E       +L +GY    VTYNTLI GLC+  R  EA  LF  M + G   
Sbjct: 113 CLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTP 172

Query: 408 DVITYNTLIQGYCKEGKI 425
           DV+TY TLI+G C  G I
Sbjct: 173 DVVTYGTLIKGLCGTGNI 190


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 172/355 (48%), Gaps = 31/355 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V    +  ++ + R +  A+D    ++  G  P   +  + I C C  G ++ AF  
Sbjct: 52  PSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNILINCFCHMGQMDFAFSV 111

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW--------KLYHDLIESGYLIQAFCN 211
             K+ + G   ++ T+ + + G C+     D ++        ++  D +  G LI   C 
Sbjct: 112 MGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARRIRFDDVLYGTLINGLCK 171

Query: 212 D--GKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              GK     +LL+++ E  LV P    +N ++   C+  N      L   M+ +   PD
Sbjct: 172 SKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPD 231

Query: 269 NFTYEEVINGLCKSRKRLE----------------AYRVFNDLKERGYVPDTVMYTTVIH 312
            FTY  +I GLC++ +R E                A  +FN + ERG   D + Y  +++
Sbjct: 232 IFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMN 291

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C    +G+ARK++  M+ +G  P+  TY  ++HGYC ID ++EA+ L   M+++G   
Sbjct: 292 GYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVP 351

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              +YN LI G C   R  EA +L E+M  K +  ++ITYN+++ G CK G I++
Sbjct: 352 DVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILD 406



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 147/310 (47%), Gaps = 27/310 (8%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG------------- 182
           PN       +  LC+ G I EA    SK+   G+F  I T++S + G             
Sbjct: 195 PNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSL 254

Query: 183 ----CI--KIDRTDLVWKLY------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230
               C+  K+D    ++ +       HD+I    L+  +C + KV E  +L   ++E G 
Sbjct: 255 LNGFCLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGE 314

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            P+   +  L+  +C          L H M+ R   PD ++Y  +I G CK  +  EA  
Sbjct: 315 QPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMN 374

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY-TYNSMIHGY 349
           +  D+  +  VP+ + Y +V+ GLCK G + DA K+  EM +    P +  TYN ++   
Sbjct: 375 LLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESL 434

Query: 350 CRIDNLEEAKRLHKEML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           CRI+ +E+A    K ++ ++ +     +YN LI+G C + R DEA +LF  M  K +  D
Sbjct: 435 CRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPD 494

Query: 409 VITYNTLIQG 418
           ++TYN L+  
Sbjct: 495 IVTYNILLDA 504



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 110/441 (24%), Positives = 175/441 (39%), Gaps = 80/441 (18%)

Query: 39  LYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDP--LFFREFLK--------QQNNVLL 88
           LY  +   +CK    KPR    LL  +       P  + +   +          +  VL 
Sbjct: 161 LYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLC 220

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           S    Q      G  PD+ + + L   L  A   K     L+  GF              
Sbjct: 221 SKMIVQ------GIFPDIFTYSSLIYGLCRAGQRKEVTSLLN--GF-------------- 258

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C +  ++EA   F+ + E G    I  +N  + G    ++     KL+H ++E G     
Sbjct: 259 CLNNKVDEARELFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDT 318

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+  +C   KV E   L   ++E GLVP+  ++N LI  +C+ +  G    LL  
Sbjct: 319 ITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLED 378

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK----------------------- 296
           M  +N  P+  TY  V++GLCKS   L+A+++ +++                        
Sbjct: 379 MFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIE 438

Query: 297 --------------ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
                         ER + P+   Y  +I G CK   L +A  ++  M  K L+P+  TY
Sbjct: 439 CVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRLDEAINLFNHMCFKNLVPDIVTY 498

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N ++        L++A  L  +++D+G      TYN LI GL   GR   A  +   ++ 
Sbjct: 499 NILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNILINGLHKGGRPKTAQKISLYLSI 558

Query: 403 KGIFRDVITYNTLIQGYCKEG 423
           +G   DV TY  +I   CK G
Sbjct: 559 RGYHPDVKTY--IINELCKGG 577



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 110/221 (49%), Gaps = 3/221 (1%)

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           Q+ C    + +   L  ++++   +P    F K++    + + +    +L   M  +   
Sbjct: 27  QSTCKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVV 86

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   T+  +IN  C   +   A+ V   + + G  P+ V +TT++ G C    + DA  +
Sbjct: 87  PFTVTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYI 146

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYC--RIDNLEEAKRLHKEMLDKGYGETT-VTYNTLIAG 383
           + EM+ + +  ++  Y ++I+G C  +I     A +L ++M ++   +   + YNT++ G
Sbjct: 147 YDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHG 206

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LC  G  +EA  L  +M  +GIF D+ TY++LI G C+ G+
Sbjct: 207 LCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQ 247



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 94/184 (51%), Gaps = 3/184 (1%)

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+  +      L H MV  +  P    + +++  + K R    A  ++  ++ +G VP T
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V +  +I+  C MG +  A  +  +++  G  PN  T+ +++ G+C  D + +A  ++ E
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDE 149

Query: 365 MLDKGYGETTVTYNTLIAGLCLH--GRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCK 421
           M+ +      V Y TLI GLC    G+   A  L ++M ++ + + ++I YNT++ G CK
Sbjct: 150 MVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCK 209

Query: 422 EGKI 425
           +G I
Sbjct: 210 DGNI 213



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 57/113 (50%)

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK   + DA  ++  M+    LP+   +  ++    ++     A  L+  M  KG    T
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           VT+N LI   C  G+ D A+ +  ++ + G   +V+T+ TL++G+C   K+++
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLD 142


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/409 (27%), Positives = 190/409 (46%), Gaps = 29/409 (7%)

Query: 30  SIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSF-NFNDPLFFREFLKQQNNVLL 88
           +  TK S     E     CK+ +++P         +PS  +F+  L     + +  N  L
Sbjct: 40  TFSTKRSSMNLEEEIDLFCKMIQSRP---------LPSIVDFSKVL---SKIAKSKNYDL 87

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
            I  F  +    G   DL S N++ + L     F +A+  +      G+ P+  ++   I
Sbjct: 88  VISLFHHMEV-CGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLI 146

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
              C+   + +A    SK++EMG    +  +N+ + G  KI   +   +L+         
Sbjct: 147 NGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRMERDGVR 206

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D +    L+   C  G+ S+   L+R ++   +VP    F  +I  F ++  F    +L
Sbjct: 207 ADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKL 266

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M  R   PD FTY  +INGLC   +  EA ++ + +  +G +PD V Y T+I+G CK
Sbjct: 267 YEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCK 326

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +  K++ EM  +GL+ +  TYN++I GY +    + A+ +   M  +       T
Sbjct: 327 SKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDSR---PNIRT 383

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y+ L+ GLC++ R ++A  LFE M +  I  D+ TYN +I G CK G +
Sbjct: 384 YSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 432



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 158/352 (44%), Gaps = 46/352 (13%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G+ PD+V+ + L +   +      A+D    ++  GF P+       I   C+ GL+ +
Sbjct: 133 FGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVND 192

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F +++  GV     T+NS + G     R     +L  D++    +         I 
Sbjct: 193 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 252

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F  +GK SE  +L  ++    + P+   +N LI+  C         ++L  MV +   P
Sbjct: 253 VFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 312

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI---------------- 311
           D  TY  +ING CKS++  E  ++F ++ +RG V DT+ Y T+I                
Sbjct: 313 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 372

Query: 312 ----------------HGLCKMGWLGDARKMWFEMIHKGLLPNEYT-YNSMIHGYCRIDN 354
                           +GLC M W  +   + FE + K  +  + T YN +IHG C+I N
Sbjct: 373 SRMDSRPNIRTYSILLYGLC-MNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGN 431

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           +E+A  L + +  KG     V+Y T+I+G C   + D++  L+ +M + G+ 
Sbjct: 432 VEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQEDGLL 483


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 149/300 (49%), Gaps = 12/300 (4%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P   +    I  LC++    EA+    ++   G    I T+ + + G  K  ++D   ++
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFC 245
           +  L+  G+         LI   C +G++ E  +L  ++++ G  +P    +N LIS FC
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
                     LL  M     +PD  TY  ++NG CK  +  +AY + N +  +G  P+ V
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +T+++ GLC+   L DA  +  EM  K   P  YTYN+++ GYCR++ LEEA++   E 
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEE 291

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +D       V++N +I GLC   R+ EA  L EE  ++    DV+ Y T+I   C+E K+
Sbjct: 292 MD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKV 349



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 80/198 (40%), Positives = 115/198 (58%), Gaps = 1/198 (0%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           VP    +N LIS  C+ +      +LL  MV     PD FTY  +I G CKS+K  +A R
Sbjct: 51  VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALR 110

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGY 349
           VF  L  RG+ PD V Y+ +I GLCK G L +A  ++  MI  G  +PN  TYNS+I G+
Sbjct: 111 VFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGF 170

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           CR+  ++EA  L + M + G     VTY TL+ G C   R D+AY L  +M +KG+  +V
Sbjct: 171 CRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNV 230

Query: 410 ITYNTLIQGYCKEGKIVN 427
           +T+ +L+ G C+E ++ +
Sbjct: 231 VTFTSLMDGLCRENRLSD 248



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 149/325 (45%), Gaps = 16/325 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  V+ N L   L +A     A D L+    +G  P+  +    I   C+S   ++A   
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----------LIQAFC 210
           F +L   G    + T++  + G  K  R      L+  +I+SG           LI  FC
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK+ E   LL ++ E G  P+   +  L++ FC+        +LL+ M  +   P+  
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +++GLC+  +  +A  +  +++ +   P    Y T++ G C++  L +ARK   E 
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEE 291

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +     PN  ++N MI G C+++   EA  L +E   +      V Y T+I  LC   + 
Sbjct: 292 MD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKV 349

Query: 391 DEAYHLFEEMAQK-GIFRDVITYNT 414
           DEA  ++ +M ++ G   + ITY+T
Sbjct: 350 DEACRVYRKMLEEPGCLPNSITYST 374



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 19/271 (7%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELY 144
           ++R F+ L +  GF PD+V+ + L D L +    K A+D     + S    PN  +    
Sbjct: 108 ALRVFEQLVAR-GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSL 166

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C  G ++EA     ++ E G    + T+ + + G  K+ R D  + L + +   G 
Sbjct: 167 ISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGL 226

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+   C + ++S+   +L ++      P    +N ++  +C      ++ E
Sbjct: 227 TPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCR---VNQLEE 283

Query: 256 LLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
               M+     P N  ++  +I GLCK  +  EA  +  + + R   PD VMYTTVI  L
Sbjct: 284 ARKFMLEEMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVL 343

Query: 315 CKMGWLGDARKMWFEMIHK-GLLPNEYTYNS 344
           C+   + +A +++ +M+ + G LPN  TY++
Sbjct: 344 CREKKVDEACRVYRKMLEEPGCLPNSITYST 374


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 160/334 (47%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G  PD+++ N +  +L  A     A + L +   SP+  +    +   C++G++  A   
Sbjct: 234 GPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEV 293

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++    +   + T+   + G  ++ +  + + L  +++  GY         L+   C 
Sbjct: 294 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 353

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++ E ++L++++   G       ++ L+S +C   N  +  E+L  MV+ N  P  FT
Sbjct: 354 SGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMVSINMVPPLFT 413

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  V+ GL K     +A  + +DL  RGYVPD V Y T+I GLCK   + +A  +  EM 
Sbjct: 414 YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMA 473

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G  PN+ T  S++ G CR+  +++A  L  EM  K +    V Y +LI GLC   R D
Sbjct: 474 SRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMD 533

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  + + M  +G+  D   Y  LI      G++
Sbjct: 534 DACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRV 567



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 149/325 (45%), Gaps = 12/325 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPDLV+ N L D   +A     A++ L+        P+  +  + +  LC  G ++ AF 
Sbjct: 268 SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFY 327

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
              ++   G    +  + S + G  K    +   KL  ++   G          L+  +C
Sbjct: 328 LLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYC 387

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G V +  E+L +++   +VP    +N ++    +  +  +   L+  +VAR   PD  
Sbjct: 388 RAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVV 447

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GLCK+ +  EA  + +++  RG  P+ V   +V+ GLC++G + DA  +  EM
Sbjct: 448 TYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 507

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             K   PN   Y S+I G C+ D +++A  +   M  +G       Y  LI  +   GR 
Sbjct: 508 SRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRV 567

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTL 415
            EA  +++EM  +G   D  T  TL
Sbjct: 568 AEAMAMYDEMVARGFLPDGSTSKTL 592



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 152/344 (44%), Gaps = 36/344 (10%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLEL 143
           L+I+FF W     G+  D+ S N L D LV++    R  KV  D L S G SPN  + ++
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHS-GCSPNLVTFKI 67

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            I+  C++G    A      L E  V   +  +N                          
Sbjct: 68  LIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFN-------------------------- 101

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI     DG   +  +L   +    + PE   +N +IS  C+  N  +  ELL  M+ +
Sbjct: 102 VLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRK 161

Query: 264 N--RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
               APD  TY  +IN   ++ +  EA      +K  G  PD +    ++ G+CK G + 
Sbjct: 162 GGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVE 221

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A ++   M   G +P+  TYNS+IH  C    + EA  + K M         VT+NTL+
Sbjct: 222 EALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLL 278

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G C  G    A  + EEM ++ I  DVITY  L+ G C+ G++
Sbjct: 279 DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQV 322



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 2/232 (0%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           HD+    +L+      G      ++ + +L  G  P    F  LI   C+     R  E 
Sbjct: 25  HDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEF 84

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  +   + APD + +  +I+GL K     +A ++F +++     P+ V Y TVI GLCK
Sbjct: 85  LRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTYNTVISGLCK 144

Query: 317 MGWLGDARKMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            G L  AR++  EMI KG    P+  TYN++I+ + R   + EA    ++M   G     
Sbjct: 145 SGNLEKARELLEEMIRKGGKSAPDIVTYNTLINAFYRASRIREACAFREKMKAAGINPDV 204

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +T N L++G+C  G  +EA  + + M   G   DVITYN++I   C  GK+V
Sbjct: 205 LTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVV 256


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 175/360 (48%), Gaps = 18/360 (5%)

Query: 85  NVLLSIRFFQW-LH-----SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFS 135
           N L+ IR F+  LH        G  PD+     +  SL E + F  A +    ++S+G  
Sbjct: 188 NGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCD 247

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
            +  +  ++I+ LC++  + EA    + L   G+   + T+ + +LG  K++  +   ++
Sbjct: 248 LSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEM 307

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            +++IE G+         L+      G +   ++L+ +V + G+ P    +N LI+  C+
Sbjct: 308 MNEMIEFGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCK 367

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    L + M  +   P++ TY  +I+  CK  K   A      + E G       
Sbjct: 368 DGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYP 427

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+++I G CK+G L  A+ ++ EMI  GL PN   Y S+I GYC+   L  A RL+ EM 
Sbjct: 428 YSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMT 487

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            KG    T T+  LI+GLC   R  EA  LF EM +  +  + +TYN LI+G+CKEG  V
Sbjct: 488 GKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTV 547



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 107/404 (26%), Positives = 191/404 (47%), Gaps = 21/404 (5%)

Query: 39  LYTEIAKQVCKI-----TRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFF 93
           +YT + + +C++      R      ++   D+    +N  +F R   K Q  V  ++   
Sbjct: 217 VYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYN--VFIRGLCKNQR-VWEAVEIK 273

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCE 150
             L S+ G   D+ +   L   L +   F+   + ++     GF P+  ++   +  L +
Sbjct: 274 NLL-SYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGLRK 332

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
            G I  AF   +K+K+ GV  S+  +N+ +    K  + D    L++++   G       
Sbjct: 333 KGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVT 392

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI +FC  GK+      L ++ E G+      ++ LIS  C+         L   M+
Sbjct: 393 YSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMI 452

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A    P+   Y  +I+G CK  +   A+R+++++  +G  P+T  +T +I GLC    + 
Sbjct: 453 ANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMA 512

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A K++ EM+   ++PNE TYN +I G+C+  N   A  L  EM++KG    T TY  LI
Sbjct: 513 EANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLI 572

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +GLC  GR  EA     ++  +    + + ++ L+ GYCKEG++
Sbjct: 573 SGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRL 616



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 158/338 (46%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEE 156
           +G +P L   N L +S+ +      A    ++ G     PN  +  + I   C+ G ++ 
Sbjct: 349 FGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDV 408

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A     K+ E+G+  ++  ++S + G  K+ +      L+ ++I +G          LI 
Sbjct: 409 ALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLIS 468

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C +G++   + L  ++   G+ P    F  LIS  C        ++L   MV  N  P
Sbjct: 469 GYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIP 528

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I G CK    + A+ + +++ E+G VPDT  Y  +I GLC  G + +AR+  
Sbjct: 529 NEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFM 588

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            ++  +    NE  +++++HGYC+   L++A    +EML +G     V Y+ LI G+   
Sbjct: 589 NDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                   L ++M  +G+  D + Y T+I    K G +
Sbjct: 649 QDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNL 686



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 157/335 (46%), Gaps = 12/335 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +GF P   + + L D L +      A D ++     G +P+       I  +C+ G ++E
Sbjct: 314 FGFVPSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDE 373

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F+ +   G+F +  T++  +    K  + D+       + E G          LI 
Sbjct: 374 AESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLIS 433

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK+     L  +++ +GL P    +  LIS +C++        L H M  +  +P
Sbjct: 434 GHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISP 493

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + +T+  +I+GLC + +  EA ++F ++ E   +P+ V Y  +I G CK G    A ++ 
Sbjct: 494 NTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELL 553

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ KGL+P+ YTY  +I G C    + EA+    ++  +      + ++ L+ G C  
Sbjct: 554 DEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKE 613

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           GR D+A     EM  +G+  D++ Y+ LI G  ++
Sbjct: 614 GRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQ 648



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 156/338 (46%), Gaps = 12/338 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
            H G  P+ V+ ++L DS  +     VA+ FL      G           I   C+ G +
Sbjct: 382 GHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKL 441

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
             A   F ++   G+  ++  + S + G  K       ++LYH++   G          L
Sbjct: 442 RAAKSLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTAL 501

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C+  +++E  +L  +++E  ++P    +N LI   C++ N  R  ELL  MV +  
Sbjct: 502 ISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGL 561

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD +TY  +I+GLC + +  EA    NDL+      + + ++ ++HG CK G L DA  
Sbjct: 562 VPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALD 621

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
              EM+ +G+  +   Y+ +I+G  R  +      L K+M D+G     V Y T+I    
Sbjct: 622 ACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANA 681

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             G    A+ L++ M  +G   +V+TY  LI G CK G
Sbjct: 682 KAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIG 719



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 150/330 (45%), Gaps = 29/330 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + + + + + L+  R F++A+   D   S+G  P+       ++ LCE      A
Sbjct: 175 GILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRA 234

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                +++  G   S+ T+N                            I+  C + +V E
Sbjct: 235 REVIGRMESSGCDLSVATYN--------------------------VFIRGLCKNQRVWE 268

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E+   +   GL  +   +  L+   C+ + F    E+++ M+     P       +++
Sbjct: 269 AVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVD 328

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GL K      A+ + N +K+ G  P   +Y  +I+ +CK G L +A  ++  M HKGL P
Sbjct: 329 GLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFP 388

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N+ TY+ +I  +C+   L+ A     +M + G   T   Y++LI+G C  G+   A  LF
Sbjct: 389 NDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLF 448

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +EM   G+  +V+ Y +LI GYCKEG++ N
Sbjct: 449 DEMIANGLKPNVVIYTSLISGYCKEGELHN 478



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 164/368 (44%), Gaps = 56/368 (15%)

Query: 104 PDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+ V+ NVL +   +     RAF++ +D +   G  P+  +    I  LC +G + EA  
Sbjct: 528 PNEVTYNVLIEGHCKEGNTVRAFEL-LDEMVEKGLVPDTYTYRPLISGLCSTGRVSEARE 586

Query: 160 AFS-------KLKEMGVFGSIKTW------NSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
             +       KL EM     +  +      + AL  C    R  L   +  DL+    LI
Sbjct: 587 FMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDAC----REMLGRGVAMDLVCYSVLI 642

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
                        +LL+Q+ + GL P+N  +  +I    +  N      L   MV+    
Sbjct: 643 YGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCL 702

Query: 267 PDNFTYEEVINGLCK----------------------------------SRKRLEAYRVF 292
           P+  TY  +INGLCK                                  S   +E     
Sbjct: 703 PNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL 762

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +D+   G++ +TV Y  +I G CK+G + +A ++   MI  G+ P+  +Y+++I+ YCR 
Sbjct: 763 HDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRR 822

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            +L+EA +L + ML++G    TV YN LI G C+ G   +A+ L ++M ++G+  +  TY
Sbjct: 823 GDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATY 882

Query: 413 NTLIQGYC 420
           N+LI G C
Sbjct: 883 NSLIHGTC 890



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/371 (23%), Positives = 154/371 (41%), Gaps = 46/371 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  +   L   L  A     A             PN  +  + I+  C+ G    A
Sbjct: 490 GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRA 549

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
           F    ++ E G+     T+   + G     R     +  +DL         +    L+  
Sbjct: 550 FELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHG 609

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G++ +  +  R++L  G+  +   ++ LI     +++   + +LL  M  +   PD
Sbjct: 610 YCKEGRLDDALDACREMLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPD 669

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  Y  +I+   K+     A+ +++ +   G +P+ V YT +I+GLCK+G +  A  +  
Sbjct: 670 NVLYTTMIDANAKAGNLKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCR 729

Query: 329 EMIHKGLLPNE----------------------------------YTYNSMIHGYCRIDN 354
           EM+    LPN+                                   TYN +I G+C++  
Sbjct: 730 EMLASNSLPNQNTYACFLDYLTSEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGR 789

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           ++EA  +   M+D G     ++Y+T+I   C  G   EA  L+E M  +G+  D + YN 
Sbjct: 790 IQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNF 849

Query: 415 LIQGYCKEGKI 425
           LI G C  G++
Sbjct: 850 LIYGCCVTGEL 860



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 132/288 (45%), Gaps = 44/288 (15%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARA----FKVAM---DFLDS 131
            L+QQ+   + I   + +H   G  PD    NVL+ ++++A A     K+A    D + S
Sbjct: 645 ILRQQDRRSI-IDLLKQMHDQ-GLRPD----NVLYTTMIDANAKAGNLKMAFGLWDIMVS 698

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEA--FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
            G  PN  +    I  LC+ GL+++A   C     +EM    S+   N+           
Sbjct: 699 EGCLPNVVTYTALINGLCKIGLMDKAELLC-----REMLASNSLPNQNT----------- 742

Query: 190 DLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
              +  + D + S         +G + +  +L   VL +G +     +N LI  FC+   
Sbjct: 743 ---YACFLDYLTS---------EGNIEKAIQL-HDVLLEGFLANTVTYNILIRGFCKLGR 789

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               +E+L  M+    +PD  +Y  +I   C+     EA +++  +  RG  PDTV Y  
Sbjct: 790 IQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNF 849

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +I+G C  G L  A ++  +M+ +G+ PN  TYNS+IHG C + ++  
Sbjct: 850 LIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSS 897



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/289 (23%), Positives = 124/289 (42%), Gaps = 30/289 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G + DLV  +VL   ++  +  +  +D L      G  P+       I    ++G ++ A
Sbjct: 630 GVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMA 689

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           F  +  +   G   ++ T+ +                          LI   C  G + +
Sbjct: 690 FGLWDIMVSEGCLPNVVTYTA--------------------------LINGLCKIGLMDK 723

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L R++L    +P    +   +     + N  +  +L H ++      +  TY  +I 
Sbjct: 724 AELLCREMLASNSLPNQNTYACFLDYLTSEGNIEKAIQL-HDVLLEGFLANTVTYNILIR 782

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK  +  EA  V  ++ + G  PD + Y+T+I+  C+ G L +A K+W  M+++G+ P
Sbjct: 783 GFCKLGRIQEAAEVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNP 842

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +   YN +I+G C    L +A  L  +M+ +G      TYN+LI G CL
Sbjct: 843 DTVAYNFLIYGCCVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCL 891



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 107/221 (48%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LIQ +  + +  +G  ++R +++ G++P+    + +++     + F     L   +V+  
Sbjct: 151 LIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSG 210

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD + Y  V+  LC+ +  + A  V   ++  G       Y   I GLCK   + +A 
Sbjct: 211 LRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVWEAV 270

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   + +KGL  +  TY +++ G C+++  E  + +  EM++ G+  +    + L+ GL
Sbjct: 271 EIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFVPSEAAVSNLVDGL 330

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G    A+ L  ++ + G+   +  YN LI   CK+GK+
Sbjct: 331 RKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKL 371



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 75/150 (50%)

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           ++ +I    ++R+ L+   V   + + G +P     + V++GL ++     A  ++ E++
Sbjct: 148 FDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFRMALHLFDEIV 207

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GL P+ Y Y +++   C + +   A+ +   M   G   +  TYN  I GLC + R  
Sbjct: 208 SSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFIRGLCKNQRVW 267

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           EA  +   ++ KG+  DV TY TL+ G CK
Sbjct: 268 EAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF P +   N+L +   +    R  K+  + +   G  P   S    I  LC+S  ++E
Sbjct: 217 YGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDE 276

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F     ++E  ++  + T++  + G  K  R D+  +L+ ++ + G          LI 
Sbjct: 277 GFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALID 336

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                 ++        Q+L  G+ P+   +N L++  C+  +  +  +L+  M      P
Sbjct: 337 GQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKP 396

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+G CK      A  +   + E G V D V +T +I G C+ G + DA +  
Sbjct: 397 DKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAERTL 456

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G+ P++ TY  +I GYC+  N++   +L KEM   G+    +TYN L+ GLC  
Sbjct: 457 REMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITYNVLMNGLCKQ 516

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G+   A  L E M   G+  D ITYN L++G+CK GK
Sbjct: 517 GQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNGK 553



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 135/278 (48%), Gaps = 44/278 (15%)

Query: 192 VWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           +W  Y +++E G+         LI  FC +G + +   +  ++ + GL P   +FN LI+
Sbjct: 207 IWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLIN 266

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--- 299
             C+ +N      L  TM      PD FTY  +I+GLCK  +   A ++F+++++RG   
Sbjct: 267 GLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRP 326

Query: 300 --------------------------------YVPDTVMYTTVIHGLCKMGWLGDARKMW 327
                                             PD VMY T+++GLCK+G +  ARK+ 
Sbjct: 327 NGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLV 386

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G+ P++ TY ++I GYC+  +LE A  + K M ++G     V +  LI+G C  
Sbjct: 387 DEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRD 446

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR  +A     EM + G+  D  TY  +I GYCK+G +
Sbjct: 447 GRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNV 484



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/257 (33%), Positives = 130/257 (50%), Gaps = 7/257 (2%)

Query: 173 IKTWNSALLG----CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED 228
           I  W+S  +     C ++ R       +H     GYL+    N       +    ++LE 
Sbjct: 161 IAYWDSGFVSDAIQCFRLVRNSNFQIPFHG---CGYLLDKMINSNSPVTIWTFYSEILEY 217

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P+   +N LI++FC++ +      + + +  R   P   ++  +INGLCKSR   E 
Sbjct: 218 GFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEG 277

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           +R+   ++E    PD   Y+ +IHGLCK G L  A +++ EM  +GL PN  T+ ++I G
Sbjct: 278 FRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDG 337

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
             R   ++ A   + +ML  G     V YNTL+ GLC  G  ++A  L +EM   G+  D
Sbjct: 338 QYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVGMKPD 397

Query: 409 VITYNTLIQGYCKEGKI 425
            ITY TLI GYCKEG +
Sbjct: 398 KITYTTLIDGYCKEGDL 414



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 15/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  VS N L + L ++R           ++     P+  +  + I  LC+ G ++ A
Sbjct: 253 GLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVA 312

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F ++++ G+  +  T+ + + G  +  R D     YH         DL+    L+  
Sbjct: 313 EQLFDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNG 372

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G V++  +L+ ++   G+ P+   +  LI  +C++ +     E+   M       D
Sbjct: 373 LCKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLD 432

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  +  +I+G C+  +  +A R   ++ E G  PD   YT VI G CK G +    K+  
Sbjct: 433 NVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLK 492

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G  P   TYN +++G C+   ++ A  L + ML+ G     +TYN L+ G C +G
Sbjct: 493 EMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEGHCKNG 552

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + ++   L  E   KG+  D   Y +L+  Y K  K
Sbjct: 553 KAEDLLKLRNE---KGLIVDYAYYTSLVSEYNKSLK 585


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/363 (29%), Positives = 164/363 (45%), Gaps = 79/363 (21%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-- 199
           ++ I+  CE    ++AF  F  +KE GV   I+T+N+ L   +K+++T+ VW LY ++  
Sbjct: 170 DMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFR 229

Query: 200 --IES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             I+S       +I   C +GK+ +  + +  +   G+ P    +N +I  +C +     
Sbjct: 230 LKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEG 289

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +L  M  R   PD++TY  +I+G+CK  K  EA  +   +KE G +P  V Y T+I 
Sbjct: 290 ARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLID 349

Query: 313 GLCKMGWL-----------------------------------GDARKMWFEMIHKGLLP 337
           G C  G L                                    +A  M  +M   G++P
Sbjct: 350 GYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVP 409

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY-------------------- 377
           +  TYN +I+GYCR  N ++A  LH EM+ KG   T VTY                    
Sbjct: 410 DSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLF 469

Query: 378 ---------------NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                          N LI G C +G  D A+ L +EM ++ I  D +TYNTL+QG C+E
Sbjct: 470 EKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCRE 529

Query: 423 GKI 425
           GK+
Sbjct: 530 GKV 532



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/368 (27%), Positives = 180/368 (48%), Gaps = 47/368 (12%)

Query: 101 GFSPDLVSCNVLFD---SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N +     S       ++ +D + + G  P+  +    I  +C+ G +EEA
Sbjct: 266 GVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEA 325

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKID-------RTDLVWKLYHDLIES-GYLIQA 208
                K+KE+G+  +  T+N+ + G C K D       R ++V +     + +   LI A
Sbjct: 326 SGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHA 385

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSE--------- 255
              +GK+ E   +++ + + G+VP++  +N LI+ +C     KK F    E         
Sbjct: 386 LFLEGKMDEADGMIKDMGDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPT 445

Query: 256 ------LLHTMVARNR----------------APDNFTYEEVINGLCKSRKRLEAYRVFN 293
                 L++ +  RNR                +PD   +  +I+G C +     A+ +  
Sbjct: 446 LVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLK 505

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ +R  VPD V Y T++ G C+ G + +AR++  EM  +G+ P+  +YN++I GY +  
Sbjct: 506 EMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRG 565

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++ +A  +  EML  G+  T +TYN LI GLC + + D A  L +EM  KGI  D  TY 
Sbjct: 566 DINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYF 625

Query: 414 TLIQGYCK 421
           +LI+G  K
Sbjct: 626 SLIEGIGK 633



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 128/280 (45%), Gaps = 21/280 (7%)

Query: 100 YGFSPDLVSCNVL-----FDSLVEARAFKVAMDFLDS-------TGFSPNPNSLELYIQC 147
           +G+  ++V   +L     ++ L+ A   +  MD  D        +G  P+  +  + I  
Sbjct: 361 FGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNILING 420

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C  G  ++AF    ++   G+  ++ T+ S +    K +R      L+  +I  G    
Sbjct: 421 YCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPD 480

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G +   + LL+++ +  +VP+   +N L+   C +       ELL 
Sbjct: 481 LIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLK 540

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  R   PD+ +Y  +I+G  K     +A+ + +++   G+ P  + Y  +I GLCK  
Sbjct: 541 EMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNALIQGLCKNQ 600

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
               A ++  EM+ KG+ P++ TY S+I G  ++D+  EA
Sbjct: 601 QGDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEA 640



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/233 (27%), Positives = 113/233 (48%), Gaps = 39/233 (16%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTM-VARNR--APDNFTYEEVINGLCKSRKRLEA 288
           P   +   L+ +  E +  G V ++ H + + R+R     +  ++ +I   C+ ++  +A
Sbjct: 127 PSPKSTLHLLKQTIESRVAG-VKDVFHELAITRDRLGTKSSIVFDMLIRACCELKRGDDA 185

Query: 289 YRVFNDLKERGYVPD---------------------------------TVMYT--TVIHG 313
           +  F+ +KE+G VP                                  + +YT   +I+ 
Sbjct: 186 FECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINV 245

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G L  A+     M + G+ PN  TYN++IHGYC    +E A+ +   M ++G    
Sbjct: 246 LCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPD 305

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + TY +LI+G+C  G+ +EA  + E+M + G+    +TYNTLI GYC +G +V
Sbjct: 306 SYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLV 358


>gi|296088470|emb|CBI37461.3| unnamed protein product [Vitis vinifera]
          Length = 822

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 186/374 (49%), Gaps = 27/374 (7%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           +P+ F    + ++N   ++RFF+W  +  G    + S   +   L+  R F  A    D 
Sbjct: 59  EPVVF----QLRSNPTSALRFFEWAENFLGLCHPVQSFCGIAHVLLRHRMFDPATRVFDR 114

Query: 132 T------------------GFSPNPNSL-ELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
                               +  NP+++    + C C +G+++ A   F+ + +MGV  S
Sbjct: 115 MVGQFGNLEVLGEFHGSFRNYGSNPSTVYSFLLHCYCRNGMVDRAVDTFAWMSKMGVSIS 174

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIES----GYLIQAFCNDGKVSEGYELLRQVLED 228
               +  L   I  DR D++ + Y ++ +      ++  +F   G+V +G    R ++E 
Sbjct: 175 HYAASEMLDLLIDSDRIDVILENYEEMCKGLGVYEFVFNSFLKRGEVEKGLNFHRALVER 234

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           GLVP+    NK++   C     G  S+    MV    +P+  T+  +IN  CK  +  EA
Sbjct: 235 GLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEA 294

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           + ++N + E+G VPD V+Y+ +I+GL + G L +   ++   + +G+  +   ++S++  
Sbjct: 295 FSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDA 354

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           Y R+ +L +A  ++  ML +G     VTY+ LI GLC +GR  EA  +F ++ ++G+   
Sbjct: 355 YVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPS 414

Query: 409 VITYNTLIQGYCKE 422
           V+TY++LI G+CK 
Sbjct: 415 VLTYSSLIDGFCKS 428



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/374 (23%), Positives = 162/374 (43%), Gaps = 47/374 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V CN +   L       VA DF D    +G SPN  +    I   C+   ++EA
Sbjct: 235 GLVPKIVDCNKILKGLCMGNQIGVASDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEA 294

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYLIQA 208
           F  ++ + E G+   +  ++  + G  +  + +         L   +  D++    ++ A
Sbjct: 295 FSLYNLMIEKGIVPDLVIYSILINGLFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDA 354

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + +  E+  ++L++G+ P    ++ LI+  C          +   ++ +   P 
Sbjct: 355 YVRVGDLGKAIEVYTRMLKEGISPNVVTYSILINGLCRNGRVLEACGVFGQILKQGLEPS 414

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CKS    + + ++  +  +G+VPD V+ + +I+GL + G + +A + +F
Sbjct: 415 VLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEALRFFF 474

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDN---------------------------------- 354
           + + +GL  N Y +N++I G  R+                                    
Sbjct: 475 QAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKGLAEQG 534

Query: 355 -LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            L+EA  L  ++L KG+    + Y TLI G C          +F+ M   GIF D+  YN
Sbjct: 535 RLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPDICIYN 594

Query: 414 TLIQGYCKEGKIVN 427
            LI  + +EG + N
Sbjct: 595 VLINMFFREGCVEN 608



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/372 (25%), Positives = 165/372 (44%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +++ + L D   ++   +        +   G  P+     + I  L   G+++EA
Sbjct: 410 GLEPSVLTYSSLIDGFCKSENLRDGFGLYGIMLRKGHVPDVVVCSMLINGLSRQGMMDEA 469

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
              F +  + G+  +   +N+ + GC ++ RT    K+Y          D++    L++ 
Sbjct: 470 LRFFFQAVKRGLTLNNYLFNALIDGCFRLKRTRDGLKMYILMGMYKVIPDVVTYTVLVKG 529

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN------------------- 249
               G++ E   L  Q+L+ G  P++  +  LI  FC+K++                   
Sbjct: 530 LAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKRDPATGLQIFKLMQSNGIFPD 589

Query: 250 ----------FGR------VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                     F R      V ELL  ++     PD  TY  +I G C  +   +A ++F 
Sbjct: 590 ICIYNVLINMFFREGCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFE 649

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            LK     P+ + +T +I   CK G + DA  ++  M+ +G  PN  TY+ +I GY + +
Sbjct: 650 VLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTE 709

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           N E A  L+++ML        V+Y+ LI GLC  G  +EA   F+    + +  DVI Y 
Sbjct: 710 NTESAFELYEKMLGDRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYG 769

Query: 414 TLIQGYCKEGKI 425
            LI+GYCK G++
Sbjct: 770 ILIRGYCKVGRL 781



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 131/316 (41%), Gaps = 29/316 (9%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESG 152
           L   Y   PD+V+  VL   L E      A+     L   GFSP+       I   C+  
Sbjct: 510 LMGMYKVIPDVVTYTVLVKGLAEQGRLDEALALFFQLLKKGFSPDHIIYCTLIDGFCKKR 569

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
                   F  ++  G+F  I  +N                           LI  F  +
Sbjct: 570 DPATGLQIFKLMQSNGIFPDICIYN--------------------------VLINMFFRE 603

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G V    ELLR++++ GL P+   +N +I  +C  K F +  +L   +      P+  T+
Sbjct: 604 GCVENVLELLREIIKYGLEPDIVTYNTMICGYCSLKIFSKAIKLFEVLKCGRTQPNAITF 663

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+  CK  +  +A  +F+ + ERG  P+ + Y+ +I G  K      A +++ +M+ 
Sbjct: 664 TILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYSCLIDGYFKTENTESAFELYEKMLG 723

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
             + PN  +Y+ +I G C+   +EEA    +  + +      + Y  LI G C  GR  E
Sbjct: 724 DRVSPNIVSYSILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAE 783

Query: 393 AYHLFEEMAQKGIFRD 408
           A  L++ M   GI  D
Sbjct: 784 AMMLYDHMLVNGIMPD 799



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 5/222 (2%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +L+  +C +G V    +    + + G+   + A ++++    +      + E    M   
Sbjct: 145 FLLHCYCRNGMVDRAVDTFAWMSKMGVSISHYAASEMLDLLIDSDRIDVILENYEEM--- 201

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
                   YE V N   K  +  +       L ERG VP  V    ++ GLC    +G A
Sbjct: 202 --CKGLGVYEFVFNSFLKRGEVEKGLNFHRALVERGLVPKIVDCNKILKGLCMGNQIGVA 259

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              +  M+  G  PN  T++++I+ YC+   L+EA  L+  M++KG     V Y+ LI G
Sbjct: 260 SDFFDMMVRSGPSPNLVTFSTLINVYCKELRLDEAFSLYNLMIEKGIVPDLVIYSILING 319

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L   G+ +E   LF     +G+  DV+ +++++  Y + G +
Sbjct: 320 LFRAGKLEEGNSLFSMALARGVKMDVVIFSSIMDAYVRVGDL 361



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/249 (23%), Positives = 101/249 (40%), Gaps = 35/249 (14%)

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
           +  DI  +N    +FFRE   +  NVL  +R        YG  PD+V+ N +       +
Sbjct: 586 IFPDICIYNVLINMFFREGCVE--NVLELLREI----IKYGLEPDIVTYNTMICGYCSLK 639

Query: 121 AFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
            F  A+   + L      PN  +  + I   C+ G +++A   FS + E G   +I T++
Sbjct: 640 IFSKAIKLFEVLKCGRTQPNAITFTILIDAYCKDGRMDDAMLIFSSMLERGPEPNILTYS 699

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
             + G  K + T+                            +EL  ++L D + P   ++
Sbjct: 700 CLIDGYFKTENTE--------------------------SAFELYEKMLGDRVSPNIVSY 733

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           + LI   C+K      S      + R+  PD   Y  +I G CK  +  EA  +++ +  
Sbjct: 734 SILIDGLCKKGLMEEASLAFQCAIGRHLLPDVIAYGILIRGYCKVGRLAEAMMLYDHMLV 793

Query: 298 RGYVPDTVM 306
            G +PD ++
Sbjct: 794 NGIMPDDLL 802


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 177/341 (51%), Gaps = 16/341 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIE 155
            YG  P+ V+   + + + ++    +AM+ L   +      +     + I  LC+ G ++
Sbjct: 221 EYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLD 280

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLI 206
            AF  F++++  G+  +I T+N  + G     R D   KL  D+I+            LI
Sbjct: 281 NAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLI 340

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            +F  +GK+ E  EL ++++  G+ P+   +  LI  FC++ +  + ++++  MV++   
Sbjct: 341 DSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCD 400

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  T+  +ING CK+ +  +   +F  +  RG V DTV Y T+I G C++G L  A+++
Sbjct: 401 PNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKEL 460

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK-EMLDKGYGETTV-TYNTLIAGL 384
           + EM+ + + PN  TY  ++ G C  DN E  K L   E ++K   E  +  YN +I G+
Sbjct: 461 FQEMVSRKVPPNIVTYKILLDGLC--DNGESEKALEIFEKIEKSKMELDIGIYNIIIHGM 518

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   + D+A+ LF  +  KG+   V TYN +I G CK+G +
Sbjct: 519 CNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPL 559



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 159/336 (47%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P+ ++ + L + L        A++ +D     G  P+  ++   +  LC SG   EA
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+ E G   +  T+   L    K  +T L  +L           D ++   +I  
Sbjct: 213 MLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDG 272

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +   + L  ++   G+      +N LI  FC    +   ++LL  M+ R   P+
Sbjct: 273 LCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPN 332

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K  EA  +  ++  RG  PDT+ YT++I G CK   L  A +M  
Sbjct: 333 VVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVD 392

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ KG  PN  T+N +I+GYC+ + +++   L ++M  +G    TVTYNTLI G C  G
Sbjct: 393 LMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELG 452

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + + A  LF+EM  + +  +++TY  L+ G C  G+
Sbjct: 453 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGE 488



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 170/346 (49%), Gaps = 14/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F   +HS     P ++  + LF ++ + + + + +     ++  G + N  +L + I C 
Sbjct: 76  FRDMIHSRP--LPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCF 133

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIK------IDRTDLVWKLYH--DL 199
           C    +  AF A  K+ ++G   +  T+++ + G C++      ++  D + ++ H  DL
Sbjct: 134 CRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDL 193

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           I    L+   C  GK +E   L+ +++E G  P    +  +++  C+        ELL  
Sbjct: 194 ITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRK 253

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  RN   D   Y  +I+GLCK      A+ +FN+++ +G   + + Y  +I G C  G 
Sbjct: 254 MEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGR 313

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             D  K+  +MI + + PN  T++ +I  + +   L EA+ LHKEM+ +G    T+TY +
Sbjct: 314 WDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTS 373

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C     D+A  + + M  KG   ++ T+N LI GYCK  +I
Sbjct: 374 LIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRI 419



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL++ N L + L  +     AM  +D     G  PN  +    +  +C+SG    A
Sbjct: 188 GHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALA 247

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
                K++E  +      ++  + G  K    D  + L++++         I    LI  
Sbjct: 248 MELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGG 307

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FCN G+  +G +LLR +++  + P    F+ LI  F ++       EL   M+ R  APD
Sbjct: 308 FCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPD 367

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK     +A ++ + +  +G  P+   +  +I+G CK   + D  +++ 
Sbjct: 368 TITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFR 427

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +G++ +  TYN++I G+C +  L  AK L +EM+ +      VTY  L+ GLC +G
Sbjct: 428 KMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNG 487

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +++A  +FE++ +  +  D+  YN +I G C   K+
Sbjct: 488 ESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKV 524



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 148/330 (44%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G + ++++ N+L      A       K+  D +     +PN  +  + I    + G + E
Sbjct: 293 GITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRK-INPNVVTFSVLIDSFVKEGKLRE 351

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A     ++   G+     T+ S + G  K +  D   ++   ++  G          LI 
Sbjct: 352 AEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C   ++ +G EL R++   G+V +   +N LI  FCE        EL   MV+R   P
Sbjct: 412 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 471

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY+ +++GLC + +  +A  +F  +++     D  +Y  +IHG+C    + DA  ++
Sbjct: 472 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ P   TYN MI G C+   L EA+ L ++M + G+     TYN LI      
Sbjct: 532 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILIRAHLGD 591

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           G   ++  L EE+ + G   D  T   +I 
Sbjct: 592 GDATKSVKLIEELKRCGFSVDASTIKMVID 621



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 121/264 (45%), Gaps = 41/264 (15%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y + + SG +      D K  +  +L R ++    +P    F++L S   + K +  V  
Sbjct: 56  YRERLRSGLV------DIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLA 109

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M  +  A + +T   +IN  C+ RK   A+     + + GY P+T+ ++T+I+GLC
Sbjct: 110 LCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLC 169

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG------ 369
             G + +A ++   M+  G  P+  T N++++G C      EA  L  +M++ G      
Sbjct: 170 LEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAV 229

Query: 370 -YGET----------------------------TVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YG                               V Y+ +I GLC HG  D A++LF EM
Sbjct: 230 TYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEM 289

Query: 401 AQKGIFRDVITYNTLIQGYCKEGK 424
             KGI  ++ITYN LI G+C  G+
Sbjct: 290 EMKGITTNIITYNILIGGFCNAGR 313


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 165/335 (49%), Gaps = 14/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  P++ + ++L +S         AF V    L   G  P+  +    I+ +   G I 
Sbjct: 90  FGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL-KLGHQPDTATFTTLIRGIYVEGKIG 148

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           EA   F K+   G    + T+ + + G  K+  T    +L   +++            +I
Sbjct: 149 EALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTII 208

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +V+E + L  +++  G+ P+   +N LI   C    +  V+ LL+ MV     
Sbjct: 209 DSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIM 268

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  ++  V++ LCK  K  EA+ V + + +RG  P+ V YT ++ G C +  + +A K+
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+ KG +PN  +YN++I+GYC+I  +++A  L  EM  +     TVTY+TLI GLC 
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCH 388

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             R  +A  LF EM       +++TY  L+   CK
Sbjct: 389 VERLQDAIALFHEMVACSQIPNLVTYRILLDYLCK 423



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 155/329 (47%), Gaps = 12/329 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  V  N L  S+ + +     +     +DS G  PN  +L + I   C    +  AF  
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +K+ ++G      T+ + + G     +      L+  +I  G+         LI   C 
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G  S    LL  +++    P   A+N +I   C+ +       L   MV +  +PD FT
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ LC   +      + N++ +   +PD V + TV+  LCK G + +A  +  +MI
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI 298

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ PN  TY +++ G+C +  ++EA ++   M+ KG     ++YNTLI G C   R D
Sbjct: 299 QRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRID 358

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +A +LF EM ++ +  D +TY+TLI G C
Sbjct: 359 KAMYLFGEMCRQELIPDTVTYSTLIHGLC 387



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+   L + L +      A+  L S       PN  +    I  LC+   + EA
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+   I T+NS +     +     V  L +++++S  +         + A
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV+E ++++ ++++ G+ P    +  L+   C         ++  TMV +   P+
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPN 340

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK ++  +A  +F ++  +  +PDTV Y+T+IHGLC +  L DA  ++ 
Sbjct: 341 VISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFH 400

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+    +PN  TY  ++   C+   L EA  L K +            N  I G+C  G
Sbjct: 401 EMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAG 460

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  ++ KG+  DV TY+ +I G C+ G
Sbjct: 461 ELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRG 495



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + N L  +L     +K     L+    +   P+  S    +  LC+ G + EA
Sbjct: 231 GISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEA 290

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                K+ + GV  ++ T+ + + G   +   D   K++  ++  G          LI  
Sbjct: 291 HDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLING 350

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +   L  ++    L+P+   ++ LI   C  +       L H MVA ++ P+
Sbjct: 351 YCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPN 410

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+R   EA  +   ++     PD  +    I G+C+ G L  AR ++ 
Sbjct: 411 LVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFS 470

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL P+ +TY+ MI+G CR   L+EA +L +EM + G       YNT+  G   + 
Sbjct: 471 NLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNN 530

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            T  A  L +EM  +G   D  T    ++    +G
Sbjct: 531 ETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDG 565



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 132/311 (42%), Gaps = 12/311 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+VS N + D+L +      A D +D     G  PN  +    +   C    ++EA   
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F  +   G   ++ ++N+ + G  KI R D    L+          D +    LI   C+
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCH 388

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             ++ +   L  +++    +P    +  L+   C+ +       LL  +   N  PD   
Sbjct: 389 VERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQV 448

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
               I+G+C++ +   A  +F++L  +G  PD   Y+ +I+GLC+ G L +A K++ EM 
Sbjct: 449 NNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMD 508

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G   N   YN++  G+ R +    A +L +EM+ +G+     T    +  L   G   
Sbjct: 509 ENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDGLDQ 568

Query: 392 EAYHLFEEMAQ 402
               +  E  Q
Sbjct: 569 SLKQILREFVQ 579



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/136 (32%), Positives = 71/136 (52%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A   FN +      P TV +  ++  + KM        +  +M   G+ PN YT + +I+
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            +C ++ +  A  +  ++L  G+   T T+ TLI G+ + G+  EA HLF++M  +G   
Sbjct: 105 SFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRP 164

Query: 408 DVITYNTLIQGYCKEG 423
           DV+TY TLI G CK G
Sbjct: 165 DVVTYGTLINGLCKVG 180



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 75/166 (45%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P    + +++  + K +       + + +   G  P+      +I+  C +  
Sbjct: 52  MLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNR 111

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +G A  +  +++  G  P+  T+ ++I G      + EA  L  +M+ +G+    VTY T
Sbjct: 112 VGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIGEGFRPDVVTYGT 171

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC  G T  A  L   M QK    +V  YNT+I   CK+ ++
Sbjct: 172 LINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQV 217


>gi|115438490|ref|NP_001043552.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|21104680|dbj|BAB93270.1| fertility restorer homologue-like [Oryza sativa Japonica Group]
 gi|113533083|dbj|BAF05466.1| Os01g0611900 [Oryza sativa Japonica Group]
 gi|125571150|gb|EAZ12665.1| hypothetical protein OsJ_02580 [Oryza sativa Japonica Group]
 gi|215767882|dbj|BAH00111.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 800

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD  + N+L   L + R  + A++    ++ TG  P   +    + C C +G ++EA   
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           ++++   G   ++ T+ + + G I     D  + L  ++ ++G          LI   C 
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCV 503

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V E  E+L++   +G VP    +N +I+ F +    G    +   M A+   P+  T
Sbjct: 504 VGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVT 563

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   I+G CK+     A ++ ND++ +G  PD   Y ++I G C+ G +  A ++   M+
Sbjct: 564 YTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLML 623

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GLLPN   YNS I GY  +  +EEA RL+++M+ +G    T TY TLI G    G   
Sbjct: 624 KDGLLPNISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVT 683

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  L+ EM  KG   D IT+  L  G C+ G I
Sbjct: 684 FALKLYSEMVAKGNIPDHITFTALTHGLCRNGDI 717



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 147/328 (44%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++V+   L    +   AF  A   L      G S N  +    I  LC  G + E 
Sbjct: 451 GFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEV 510

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                + +  G   +  T+NS + G IK       + +Y  +   G           I  
Sbjct: 511 GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDG 570

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C         ++L  V   GL P+  A+N LI  FC++ N     ++L  M+     P+
Sbjct: 571 YCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIFGFCQEGNMSHALQVLVLMLKDGLLPN 630

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y   I G    +   EA R++  + + G   DT  YTT+I G  K G +  A K++ 
Sbjct: 631 ISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYS 690

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG +P+  T+ ++ HG CR  ++++A++L  EM         + YN LI G   +G
Sbjct: 691 EMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNG 750

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +  EA+ L +EM ++ I  D  TY+ L+
Sbjct: 751 KLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 152/347 (43%), Gaps = 14/347 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           ++R F  + +     PD   C+V   SL + R    A+  L      GF P   +    +
Sbjct: 196 AVRLFDEMPASE-IEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVV 254

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
             L + G +EEA     +L   G   S+    + + G            ++ + +  G  
Sbjct: 255 DVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLV 314

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI+    +G   + YEL RQ+ + GL+P    FN +I      K +     L
Sbjct: 315 PTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSL 374

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M A +  PD FTY  +I+ LC+ RK  EA  ++  + E G  P  V Y +++   C 
Sbjct: 375 FKEM-ADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCV 433

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +A K++ EM  KG  PN  TY +++ G+      ++A  L  EM   G      T
Sbjct: 434 NGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYT 493

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           YNTLI GLC+ GR  E   + +    +G     +TYN++I G+ K G
Sbjct: 494 YNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 19/331 (5%)

Query: 112 LFDSLVEARAFKVAM--------DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +FD ++ A  FK  M        D + ++   P+     + I  LC+      A     K
Sbjct: 179 MFDVVMRA-CFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRK 237

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
           +++ G      T+NS +   +K  R +    +  +L+ +G          L+  +C   +
Sbjct: 238 MQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQRE 297

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V +  ++  + L DGLVP +  +  LI    E+    +  EL   M      P    +  
Sbjct: 298 VRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNM 357

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VI GL   +   +A  +F ++ + G +PD   Y  +IH LC+   + +A  +W +M   G
Sbjct: 358 VIKGLLNDKLWKDAVSLFKEMADSG-IPDAFTYNILIHWLCQRRKIREALNLWEKMNETG 416

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P   TY+S++  YC    ++EA +L+ EM  KG+    VTY TL+ G       D+AY
Sbjct: 417 VKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAY 476

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L  EM Q G+  +  TYNTLI G C  G++
Sbjct: 477 ALLAEMKQNGVSCNDYTYNTLINGLCVVGRV 507



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 90/195 (46%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+ P+  +   L++      +      LL  M  + R  D + ++ V+    K     +A
Sbjct: 137 GVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEGMYDDA 196

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            R+F+++      PD  + +  I  LCK+     A  +  +M   G +P ++T+NS++  
Sbjct: 197 VRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDV 256

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
             +   +EEA  +  E+L  G   + V   TL+ G CL     +A  +FEE  + G+   
Sbjct: 257 LVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPT 316

Query: 409 VITYNTLIQGYCKEG 423
            +TY  LI+G  +EG
Sbjct: 317 DVTYTVLIRGCTEEG 331



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 81/167 (48%)

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           +M AR   PD  +  +++    +S    +A  +  +++ +G   D  M+  V+    K G
Sbjct: 132 SMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGRPLDAWMFDVVMRACFKEG 191

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              DA +++ EM    + P++   +  I   C++ +   A  + ++M D G+     T+N
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +++  L   GR +EA H+ +E+   G    V+   TL+ GYC + ++
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREV 298


>gi|413920478|gb|AFW60410.1| hypothetical protein ZEAMMB73_296337 [Zea mays]
          Length = 676

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 106/362 (29%), Positives = 173/362 (47%), Gaps = 19/362 (5%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTG 133
           RE   ++ + LL+  + Q      GF  D  +C V+  +      F+   D    +   G
Sbjct: 193 REGRFEEADALLAAMWAQ------GFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMG 246

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             PN  +   +I  LCE G +++AF    ++   G+  ++ T  S + G  KI   +  +
Sbjct: 247 TPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAF 306

Query: 194 KLYHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           +L+  L++S            +I  +C +GK++    LL +++E GL P    +  LI  
Sbjct: 307 RLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHG 366

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C+  +F R  EL++ M      P+ +TY  +I G CK  K  EAY+V      +G   D
Sbjct: 367 HCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLD 426

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT +I   CK G +  A  ++ +M  K   P+ +TY ++I  YC+   +E++++L  
Sbjct: 427 KVTYTILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFD 486

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + L  G   T  TY ++IAG C  G+   A  +FE M Q G   D ITY  LI   CKE 
Sbjct: 487 KCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKES 546

Query: 424 KI 425
           ++
Sbjct: 547 RL 548



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 115/222 (51%), Gaps = 1/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +G+  E   LL  +   G   ++     ++  FC +  F  V++L   M    
Sbjct: 187 LVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMG 246

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+   Y   I+GLC+     +A+ V  ++  +G  P+   +T++I GLCK+GW+  A 
Sbjct: 247 TPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWMERAF 306

Query: 325 KMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++ +++      PN +TY  MI GYC+   L  A+ L   M+++G    T TY TLI G
Sbjct: 307 RLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHG 366

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  G  D A+ L  +M  +G   ++ TYN +I G+CK+GKI
Sbjct: 367 HCKGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKI 408



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 159/345 (46%), Gaps = 20/345 (5%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMD 127
           D L  R ++KQ  +VL  +          G  P++ +   L D L +     RAF++ + 
Sbjct: 259 DGLCERGYVKQAFHVLEEM-------VGKGLKPNVYTHTSLIDGLCKIGWMERAFRLFLK 311

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            + S+ + PN ++  + I   C+ G +  A     ++ E G+  +  T+ + + G  K  
Sbjct: 312 LVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIHGHCKGG 371

Query: 188 RTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             D  ++L + +   G+L         I  FC  GK+ E Y++LR     GL  +   + 
Sbjct: 372 SFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQEAYKVLRMATSQGLHLDKVTYT 431

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI+  C++ +     +L   M  ++  PD  TY  +I   C+ R+  ++ ++F+     
Sbjct: 432 ILITEHCKQGHITCALDLFKQMAEKSCHPDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSI 491

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G VP    YT++I G C++G L  A K++  M+  G LP+  TY ++I   C+   LEEA
Sbjct: 492 GLVPTKQTYTSMIAGYCRLGKLTSALKVFERMVQHGCLPDSITYGALISSLCKESRLEEA 551

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           + L + MLDK      VT  TL    C   +   A    + + ++
Sbjct: 552 RALFETMLDKHLVPCDVTRVTLAYEYCRRDKITIAVSFLDRLDKR 596



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 1/196 (0%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+ P++ +F  L+   C +  F     LL  M A+    D+ T   V+   C+  +    
Sbjct: 176 GVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGFCLDSATCTVVVRAFCRQGRFRNV 235

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +F  + E G  P+ V Y+  I GLC+ G++  A  +  EM+ KGL PN YT+ S+I G
Sbjct: 236 TDLFRRMSEMGTPPNMVNYSAWIDGLCERGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDG 295

Query: 349 YCRIDNLEEAKRLHKEML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            C+I  +E A RL  +++    Y     TY  +I G C  G+   A  L   M ++G+  
Sbjct: 296 LCKIGWMERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAP 355

Query: 408 DVITYNTLIQGYCKEG 423
           +  TY TLI G+CK G
Sbjct: 356 NTNTYTTLIHGHCKGG 371



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 313 GLCKMGWLGDARKMWFEMIHK--GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           GL   G    AR+ +  M     G+ P+  ++ +++ G CR    EEA  L   M  +G+
Sbjct: 153 GLRHPGCFAHAREAFDGMARAAGGVRPDHRSFRALVLGCCREGRFEEADALLAAMWAQGF 212

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + T   ++   C  GR      LF  M++ G   +++ Y+  I G C+ G +
Sbjct: 213 CLDSATCTVVVRAFCRQGRFRNVTDLFRRMSEMGTPPNMVNYSAWIDGLCERGYV 267



 Score = 40.0 bits (92), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 38/186 (20%), Positives = 78/186 (41%), Gaps = 14/186 (7%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+ ++    I   C+   +E++   F K   +G+  + +T+ S + G  ++ +     K+
Sbjct: 460 PDIHTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRLGKLTSALKV 519

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +          D I  G LI + C + ++ E   L   +L+  LVP +     L   +C 
Sbjct: 520 FERMVQHGCLPDSITYGALISSLCKESRLEEARALFETMLDKHLVPCDVTRVTLAYEYCR 579

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF-NDLKERGYVPDTV 305
           +         L  +  R +A    T + ++  L  +   L+A  +F  ++ ++ Y  D  
Sbjct: 580 RDKITIAVSFLDRLDKRQQA---HTADALVRKL-STVGNLDAASLFLKNVLDKHYAVDHA 635

Query: 306 MYTTVI 311
            YT+ I
Sbjct: 636 TYTSFI 641


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 171/371 (46%), Gaps = 47/371 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ + L + L      + AMD L+     G  P   +  + +  LC++G   EA
Sbjct: 267 GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEA 326

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
                K+K+ G   +I+T+ + + G  +  + ++   LYH ++  G              
Sbjct: 327 VELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQ 386

Query: 205 -------------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          +I+ FC  G + +   +  ++L+ G  P 
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPN 446

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N LI  +C++ N      LL  M      PD +TY E+I+G  +  K   A  +F 
Sbjct: 447 VITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFY 506

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            + E G  P+ V YT +I G   +  + DA  ++++M+  G LP+  TYN MI G+ + +
Sbjct: 507 GMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTN 566

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++ EA+    +M+ +G     +TY + I GLC +GRT  A+ +F EM ++  F ++ TY+
Sbjct: 567 SISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYS 626

Query: 414 TLIQGYCKEGK 424
           +LI G C+EG+
Sbjct: 627 SLIYGLCQEGR 637



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 155/340 (45%), Gaps = 29/340 (8%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQC 147
           +F   ++S Y F   L S   L   L +     +A D    + ++G  P+  +    I  
Sbjct: 152 QFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINI 211

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           LC+ G ++EA    S +     + +  T+ S +LG                         
Sbjct: 212 LCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILG------------------------- 246

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C +  +   + +  ++++DG  P +  ++ LI+  C +       ++L  MV +   P
Sbjct: 247 -HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             +TY   +  LC +    EA  +   +K+RG VP+   +T +I GL + G    A  ++
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  GL+P   TYN++I+  C     E A  + K ML  G   +T TYN +I   CL 
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G   +A  +F++M + G   +VITYNTLI GYCK+G + N
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNN 465



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 151/330 (45%), Gaps = 33/330 (10%)

Query: 101 GFSPDLVSCNVLFDSL-VEAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P  V+ N L + L VE R   AF +   ++ S G  P+  +    I+C C  G I++
Sbjct: 372 GLVPTTVTYNALINQLCVEGRFETAFTI-FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQK 430

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A   F K+ + G   ++ T+N+                          LI  +C  G ++
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNT--------------------------LIYGYCKQGNLN 464

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
               LL  +  +GL P+   + +LIS F         + L + M+    +P++ TY  +I
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G     K  +A  +F  + E G +P +  Y  +I G  K   + +A     +M+ +GLL
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL 584

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA--Y 394
           PN  TY S I G CR      A ++  EM  + Y     TY++LI GLC  GR ++A  Y
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +L   +   G   +V TY TL++G C EG+
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGLCGEGR 674



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++++ N L     +      AM  L+     G  P+  +    I      G +E A
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F  + E G+  +  T+ + + G   + + D    L+  ++ESG L         I  
Sbjct: 502 TSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISG 561

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F     +SE      ++++ GL+P    +   I   C     G   ++ H M  RN  P+
Sbjct: 562 FSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPN 621

Query: 269 NFTYEEVINGLCKSRKRLEA--YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            +TY  +I GLC+  +  +A  Y +   L   G  P+   YTT++ GLC  G   +A ++
Sbjct: 622 LYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQL 681

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M  KGL P+E  Y +++ G C+   +E A  +   M   G+      Y  LI  LC 
Sbjct: 682 VVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCK 741

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               +EA  +F+ M +K    D + +  L+ G  KEG+
Sbjct: 742 ENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGE 779



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 21/354 (5%)

Query: 89  SIRFFQWLHSHYGFSP------DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLE 142
           +   F+W+ SH G  P      +++ C  L   + +A    V  D +   G SPN  +  
Sbjct: 396 AFTIFKWMLSH-GSLPSTQTYNEIIKCFCLMGDIQKAM---VIFDKMLKAGSSPNVITYN 451

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             I   C+ G +  A      +K  G+     T+   + G  +  + +    L++ ++E 
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          +I  + N  KV +   L  +++E G +P +  +N +IS F +  +    
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
                 MV +   P+  TY   I+GLC++ +   A+++F+++++R Y P+   Y+++I+G
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYG 631

Query: 314 LCKMGWLGDAR--KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           LC+ G   DA    +   + H G  PN  TY +++ G C      EA +L   M  KG  
Sbjct: 632 LCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQ 691

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   Y  L+ G C + + + A ++F  M   G    +  Y  LI   CKE  I
Sbjct: 692 PSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFI 745


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P LVS + LF  L + R   +++D    L + G+  +  +  + I+  C  G ++ A   
Sbjct: 393 PSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKL 452

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCN 211
             ++    +      + S + G  K+       + ++ ++E G L         I A C 
Sbjct: 453 MEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCR 512

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G+V E   L+ ++   G+ P    +N +I+R C+++   R  EL   M+ RN  P    
Sbjct: 513 EGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVV 572

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G  K     +A  ++  + + G  PD V YT +I+ LC    + +A  ++ +M 
Sbjct: 573 YSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMT 632

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P++ +Y S+I G+CRI ++ +A  L  EML +G+  T VTY +L+ G C   R D
Sbjct: 633 ENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMNRID 692

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  L +EM +KGI  DV+TYN LI  + + G +
Sbjct: 693 IADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNL 726



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 142/302 (47%), Gaps = 15/302 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           M+ +     +P+P++ E  +   C+ GL   A   F+ + E G+  SI T N  +    +
Sbjct: 453 MEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCR 512

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R +    L +++   G          +I   C + K     EL   +L+  ++P    
Sbjct: 513 EGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLPSVVV 572

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           ++ LI  F ++ N  +   L   M+     PD   Y  +IN LC   +  EAY +F  + 
Sbjct: 573 YSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSRMCEAYNLFKKMT 632

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF---EMIHKGLLPNEYTYNSMIHGYCRID 353
           E G  PD + YT+VI G C+   +GD RK W    EM+ +G LP   TY S++ GYC+++
Sbjct: 633 ENGMTPDKISYTSVIAGFCR---IGDMRKAWALFNEMLQRGHLPTVVTYTSLVDGYCKMN 689

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            ++ A  L  EM  KG     VTYN LIA     G  D+A  +  EM + G+  D +TY 
Sbjct: 690 RIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALEMLNEMKENGVLPDHMTYM 749

Query: 414 TL 415
            L
Sbjct: 750 ML 751



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 153/335 (45%), Gaps = 18/335 (5%)

Query: 108 SCNVLFDSLVEA--RAF-KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE------EAF 158
           SCN L   L EA  R F +   + + STG  PN  +  + +   C+    E      +A 
Sbjct: 216 SCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQAT 275

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAF 209
               +++  G   ++ T+++ + G  ++   +        LI +  L         I   
Sbjct: 276 EILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIHGL 335

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G++ E  ++L ++   G+ P+   ++ LI  FC++ +  +   L+  M   N  P  
Sbjct: 336 CKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSL 395

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  + +GLCK R    +  +F DL   GY  D   Y+ +I G C  G L  A K+  E
Sbjct: 396 VSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEE 455

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+   L P+   + S++HG+C++     A      ML+ G   +  T N +I   C  GR
Sbjct: 456 MVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIIDAHCREGR 515

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +EA +L  EM  +GIF ++ TYN +I   CKE K
Sbjct: 516 VEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERK 550



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 139/316 (43%), Gaps = 9/316 (2%)

Query: 117 VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
           ++ R     ++ ++  G SP   +   YI  LC  G +E A      L       ++  +
Sbjct: 269 IDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCY 328

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLE 227
           N+ + G  K    D   K+  ++   G          LI  FC  G V +G  L+ ++  
Sbjct: 329 NAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKY 388

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
             + P   +++ L    C+K+      ++   + A     D   Y  +I G C       
Sbjct: 389 SNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLDS 448

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+++  ++      PD   + +++HG CKMG   +A + +  M+  G+LP+  T N +I 
Sbjct: 449 AHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVIID 508

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            +CR   +EEA  L  EM  +G      TYN +I  LC   +++ A  LF  M ++ +  
Sbjct: 509 AHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLMLKRNVLP 568

Query: 408 DVITYNTLIQGYCKEG 423
            V+ Y+TLI G+ K+ 
Sbjct: 569 SVVVYSTLIDGFAKQS 584



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 140/301 (46%), Gaps = 15/301 (4%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +L I+    + ++E A   F + K+ G+  S ++ N  L    + +R + +  L+ ++  
Sbjct: 183 DLLIKVFAANSMLENAVDVFLQAKKTGLELSTRSCNFLLKCLAEANRREFLRSLFEEMKS 242

Query: 202 SG---------YLIQAFCN------DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +G          ++  +C       D    +  E+L ++  +G  P    ++  I   C 
Sbjct: 243 TGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCR 302

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   + + ++++ N   + + Y  +I+GLCK  +  EA +V  ++K  G  PD   
Sbjct: 303 VGYVESALDFVRSLISANGLVNVYCYNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYT 362

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+ +IHG CK G +     +  EM +  + P+  +Y+S+ HG C+    + +  + +++ 
Sbjct: 363 YSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLG 422

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             GY      Y+ LI G C+ G  D A+ L EEM +  +  D   + +L+ G+CK G  V
Sbjct: 423 AAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWV 482

Query: 427 N 427
           N
Sbjct: 483 N 483


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 164/338 (48%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GFS D  +C V+  +      F+        +   G  PN  +   ++  LC+ G +++A
Sbjct: 211 GFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQA 270

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
           F    ++   G+  ++ T  S + G  KI  T+  ++L+  L++S            +I 
Sbjct: 271 FHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIG 330

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C +GK++    LL +++E GL P    +  LI   C   +F R  EL++ M      P
Sbjct: 331 GYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLP 390

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + +TY  +I G CK  K  +AY+V      +G  PD V YT +I   CK G +  A  ++
Sbjct: 391 NIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLF 450

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M      P+  TY ++I  YC+   +E++++L  + L  G   T  TY ++IAG C  
Sbjct: 451 NQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRV 510

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G++  A  +FE M Q G   D ITY  LI G CKE ++
Sbjct: 511 GKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRL 548



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 1/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +G+  E   LL  +  +G   ++     ++  FC +  F  V  L   MV   
Sbjct: 187 LVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMG 246

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+   Y   ++GLCK     +A+ V  ++  +G  P+   +T++I GLCK+GW   A 
Sbjct: 247 NPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAF 306

Query: 325 KMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++ +++      PN +TY  MI GYC+   L  A+ L   M+++G    T TY TLI G
Sbjct: 307 RLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDG 366

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  G  D A+ L  +M  +G   ++ TYN +I G+CK+GKI
Sbjct: 367 HCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKI 408



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 152/351 (43%), Gaps = 39/351 (11%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN-VLFDSLVEARAFKVAMDFLDSTGFSPNP 138
           L++  ++LL +R        +G    + + N VL   L +   F  A    D  G  P+ 
Sbjct: 129 LREATDMLLELR-------SHGLPLVVETANWVLRVGLRQRHHFAHARQAFDGMGVRPDA 181

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK--LY 196
            S    +   C+ G  EEA                     ALL  +        W+    
Sbjct: 182 RSFRALVLGCCQEGRFEEA--------------------DALLAAM--------WREGFS 213

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D      +++AFC  G+  +   L  +++E G  P    +   +   C++    +   +
Sbjct: 214 LDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHV 273

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLC 315
           L  MV +   P+ +T+  +I+GLCK      A+R+F  L K   Y P+   YT +I G C
Sbjct: 274 LEEMVGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYC 333

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G L  A  +   M+ +GL PN  TY ++I G+CR  + + A  L  +M  +G+     
Sbjct: 334 KEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIY 393

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           TYN +I G C  G+  +AY +      +G+  D +TY  LI  +CK+G I 
Sbjct: 394 TYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHIT 444



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 161/345 (46%), Gaps = 20/345 (5%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMD 127
           D L  R ++KQ  +VL  +          G  P++ +   L D L +     RAF++ + 
Sbjct: 259 DGLCKRGYVKQAFHVLEEM-------VGKGLKPNVYTHTSLIDGLCKIGWTERAFRLFLK 311

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            + S+ + PN ++  + I   C+ G +  A     ++ E G+  +  T+ + + G  +  
Sbjct: 312 LVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGG 371

Query: 188 RTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             D  ++L + +   G+L         I  FC  GK+ + Y++LR     GL P+   + 
Sbjct: 372 SFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQGLCPDKVTYT 431

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI+  C++ +     +L + M   +  PD  TY  +I   C+ R+  ++ ++F+     
Sbjct: 432 MLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSI 491

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G VP    YT++I G C++G    A K++  M+  G LP+  TY ++I G C+   LEEA
Sbjct: 492 GLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEA 551

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           + L + MLDK      VT  TL    C   +T  A    + + ++
Sbjct: 552 RALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLDGLDKR 596


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 192/410 (46%), Gaps = 31/410 (7%)

Query: 40  YTEIAKQVCKITRTKPRWEQTL-----LSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +  L     L  IP+ F++N      + L  +N    ++   
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYN---ILLKGLCDENRSQEALELL 181

Query: 94  QWLHSHYGFS--PDLVS----CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
             +    G    PD+VS     N  F      +A+    + LD  G  P+  +    I  
Sbjct: 182 HMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-GILPDVVTYNSIIAA 240

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL------------LGCIKIDRTDLVWKL 195
           LC++  +++A    + + + GV     T+NS L            +G +K  R+D V   
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP- 299

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D++    L+   C +G+  E  ++   + + GL PE T +  L+  +  K     +  
Sbjct: 300 --DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV     PD++ +  +I    K  K  +A  VF+ ++++G  P+ V Y  VI  LC
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + DA   + +MI +GL P    YNS+IHG C  +  E A+ L  EMLD+G    T+
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +N++I   C  GR  E+  LFE M + G+  +VITYNTLI GYC  GK+
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 140/258 (54%), Gaps = 15/258 (5%)

Query: 183 CIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQVLEDGLVP 232
           C +  R DL +    ++I+ G+         L++  C D + S+  ++ LR++ E G +P
Sbjct: 97  CCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIP 156

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA----PDNFTYEEVINGLCKSRKRLEA 288
              ++N L+   C++       ELLH M+A +R     PD  +Y  VING  K     +A
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLH-MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           Y  ++++ +RG +PD V Y ++I  LCK   +  A ++   M+  G++P+  TYNS++HG
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC     +EA    K+M   G     VTY+ L+  LC +GR  EA  +F+ M ++G+  +
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335

Query: 409 VITYNTLIQGYCKEGKIV 426
           + TY TL+QGY  +G +V
Sbjct: 336 ITTYGTLLQGYATKGALV 353



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 47/368 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD ++ N +      +   K A+ FL    S G  P+  +  L +  LC++G   EA
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG---------------------------------CI 184
              F  + + G+   I T+ + L G                                 C 
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380

Query: 185 -----KIDRTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                K+D+  LV+       L  + +  G +I   C  G+V +      Q++++GL P 
Sbjct: 381 YAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           N  +N LI   C    + R  EL+  M+ R    +   +  +I+  CK  + +E+ ++F 
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +   G  P+ + Y T+I+G C  G + +A K+   M+  GL PN  TY+++I+GYC+I 
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +E+A  L KEM   G     +TYN ++ GL    RT  A  L+  + + G   ++ TYN
Sbjct: 561 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 414 TLIQGYCK 421
            ++ G CK
Sbjct: 621 IILHGLCK 628



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/377 (24%), Positives = 169/377 (44%), Gaps = 51/377 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D ++   L   L   +    AMD     +   G  PN  S  + ++ LC+    +E
Sbjct: 117 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQE 176

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------- 205
           A      + +    GS   + ++ + + G  K   +D  +  YH++++ G L        
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236

Query: 206 -IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I A C    + +  E+L  ++++G++P+   +N ++  +C           L  M +  
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI------------H 312
             PD  TY  +++ LCK+ + +EA ++F+ + +RG  P+   Y T++            H
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 313 GL-----------------------CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           GL                        K G +  A  ++ +M  +GL PN  TY ++I   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   +E+A    ++M+D+G     + YN+LI GLC   + + A  L  EM  +GI  + 
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 410 ITYNTLIQGYCKEGKIV 426
           I +N++I  +CKEG+++
Sbjct: 477 IFFNSIIDSHCKEGRVI 493



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 153/339 (45%), Gaps = 18/339 (5%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P++ +   L        +LVE       +D +   G  P+     + I    + G +
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGL---LDLMVRNGIHPDHYVFSILICAYAKQGKV 387

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++A   FSK+++ G+  +  T+ + +    K  R +     +  +I+ G          L
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   K     EL+ ++L+ G+      FN +I   C++       +L   MV    
Sbjct: 448 IHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGV 507

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +ING C + K  EA ++ + +   G  P+TV Y+T+I+G CK+  + DA  
Sbjct: 508 KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM   G+ P+  TYN ++ G  +      AK L+  + + G      TYN ++ GLC
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +  TD+A  +F+ +    +  +  T+N +I    K G+
Sbjct: 628 KNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGR 666



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 44/337 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +PN  +    I  LC+SG +E+A   F ++ + G+      +NS + G    ++ +  
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P    +N LI+ 
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C         +LL  MV+    P+  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580

Query: 304 TVMYTTVI-----------------------------------HGLCKMGWLGDARKMWF 328
            + Y  ++                                   HGLCK     DA +M+ 
Sbjct: 581 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 640

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +    L     T+N MI    ++   +EAK L       G      TY  +   +   G
Sbjct: 641 NLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQG 700

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +E   LF  M   G   D    N +++   + G+I
Sbjct: 701 LLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 4/159 (2%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +I   C++ +    +    ++ ++G+  D + +T ++ GLC      DA  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 327 WF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLHKEMLDKGYGE--TTVTYNTLIA 382
               M   G +PN ++YN ++ G C  +  +EA + LH    D+G G     V+Y T+I 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G    G +D+AY  + EM  +GI  DV+TYN++I   CK
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY  +I   CR   L+        ++ KG+    + +  L+ GLC   RT +A  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 397 -FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               M + G   +V +YN L++G C E +
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENR 173



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT---VTYN 378
           DAR ++ E++ +G   + Y  N  +    R D+   A   +  M   G  E T    TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVAR-DSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            LI   C  GR D  +     + +KG   D I +  L++G C + +
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 137


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+V+ + L +     +    A+  +D      + PN  +    I  L       EA
Sbjct: 145 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 204

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQA 208
                ++   G    + T+ + + G  K    DL           K+  D++    +I A
Sbjct: 205 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 264

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN   V++   L  ++   G+ P    +N LI   C    +   S LL  M+ R   P+
Sbjct: 265 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 324

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K +EA ++++++ +R   PD   Y+++I+G C    L +A+ M+ 
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 384

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI K   PN  TYN++I G+C+   +EE   L +EM  +G    TVTYNTLI GL   G
Sbjct: 385 LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 444

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F++M   G+  D+ITY+ L+ G CK GK+
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 481



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 163/336 (48%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           + P+ V+ N L   L    +A      +D + + G  P+  +    +  LC+ G I+ A 
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               K+++  +   +  + + +         +    L+ ++   G          LI+  
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           CN G+ S+   LL  ++E  + P    F+ LI  F ++       +L   M+ R+  PD 
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           FTY  +ING C   +  EA  +F  +  +   P+ V Y T+I G CK   + +  +++ E
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 420

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +GL+ N  TYN++I G  +  + + A+++ K+M+  G     +TY+ L+ GLC +G+
Sbjct: 421 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 480

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++A  +FE + +  +  D+ TYN +I+G CK GK+
Sbjct: 481 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKV 516



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 14/332 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V    + D+L   +    A++    +D+ G  PN  +    I+CLC  G   +A    
Sbjct: 254 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 313

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
           S + E  +  ++ T+++ +   +K  +     KLY ++I+            LI  FC  
Sbjct: 314 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 373

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            ++ E   +   ++     P    +N LI  FC+ K      EL   M  R    +  TY
Sbjct: 374 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 433

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I GL ++     A ++F  +   G  PD + Y+ ++ GLCK G L  A  + FE + 
Sbjct: 434 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL-VVFEYLQ 492

Query: 333 KGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           K  + P+ YTYN MI G C+   +E+   L   +  KG     + Y T+I+G C  G  +
Sbjct: 493 KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 552

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EA  LF EM + G   +  TYNTLI+   ++G
Sbjct: 553 EADALFREMKEDGTLPNSGTYNTLIRARLRDG 584



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 149/351 (42%), Gaps = 79/351 (22%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGY 204
           +++A   F ++ +     SI  +N  L    K+++ DLV          ++ +DL     
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   ++     +L ++++ G  P+    + L++ +C  K       L+  M    
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  +I+GL    K  EA  + + +  RG  PD   Y TV++GLCK G +    
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 321 -------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
                                           DA  ++ EM +KG+ PN  TYNS+I   
Sbjct: 241 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 300

Query: 350 CR-----------------------------ID------NLEEAKRLHKEMLDKGYGETT 374
           C                              ID       L EA++L+ EM+ +      
Sbjct: 301 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 360

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TY++LI G C+H R DEA H+FE M  K  F +V+TYNTLI+G+CK  ++
Sbjct: 361 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 411



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 149/329 (45%), Gaps = 14/329 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++V+ N L   L      + A ++  D ++    +PN  +    I    + G + E
Sbjct: 285 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVE 343

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A   + ++ +  +   I T++S + G    DR D    ++  +I             LI+
Sbjct: 344 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 403

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   +V EG EL R++ + GLV     +N LI    +  +     ++   MV+    P
Sbjct: 404 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 463

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++GLCK  K  +A  VF  L++    PD   Y  +I G+CK G + D   ++
Sbjct: 464 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 523

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ PN   Y +MI G+CR    EEA  L +EM + G    + TYNTLI      
Sbjct: 524 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRD 583

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           G    +  L +EM   G   D  T + +I
Sbjct: 584 GDKAASAELIKEMRSCGFVGDASTISMVI 612



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K+ +  +L  ++++   +P    FNKL+S   +   F  V  L   M     + D ++
Sbjct: 58  DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 117

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +IN  C+  +   A  V   + + GY PD V  +++++G C    + +A  +  +M 
Sbjct: 118 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 177

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                PN  T+N++IHG    +   EA  L   M+ +G      TY T++ GLC  G  D
Sbjct: 178 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 237

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            A  L ++M +  I  DV+ Y T+I   C
Sbjct: 238 LALSLLKKMEKGKIEADVVIYTTIIDALC 266



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 27/232 (11%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    I+  C++  +EE    F ++ + G+ G+  T+N+ + G  +    D+  K+
Sbjct: 393 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 452

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +  ++  G          L+   C  GK+ +   +   + +  + P+   +N +I   C+
Sbjct: 453 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 512

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   +L  ++  +   P+   Y  +I+G C+   + EA  +F ++KE G +P++  
Sbjct: 513 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 572

Query: 307 YTTVIHGLCK----------------MGWLGDAR--KMWFEMIHKGLLPNEY 340
           Y T+I    +                 G++GDA    M   M+H G L   Y
Sbjct: 573 YNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 624


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 170/336 (50%), Gaps = 14/336 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEAFCAF 161
           P +V+  ++ D   +A   K A+   +      +PN  +  + +  LC++ L  +A+   
Sbjct: 5   PTVVTWTIIIDGFCKANQLKQALACFEKMREFVAPNERTYNVVVNGLCKARLTSKAYEVL 64

Query: 162 SKLKE-MGVFGSIKTWNSALLGCIK---IDRTDLVWK-------LYHDLIESGYLIQAFC 210
            ++++   V   + T+++ + G  K   +DR   + +       +  D++    ++   C
Sbjct: 65  KEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYTSVVDGLC 124

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDN 269
            DGK+    E++R++   G+ P+   F+ LI+ +C  +      +L   ++  +   PD 
Sbjct: 125 RDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDV 184

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+G CKS    +A ++   ++ R  VP+ V Y++++HGLCK G L  A  ++  
Sbjct: 185 VTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRR 244

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KG +PN  TY ++IHG C    ++ A+ L  EM        TV+YN L+ G C  GR
Sbjct: 245 MTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGR 304

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA  LF+EMA K    D ITY  L++G+C   ++
Sbjct: 305 IEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRL 340



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 170/344 (49%), Gaps = 22/344 (6%)

Query: 102 FSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            +P+  + NV+ + L +AR    A++V  +  D    +P+  +    I   C+ G ++ A
Sbjct: 37  VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 96

Query: 158 FCAFSKLKEM----GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            C    L+EM    G+   + T+ S + G  +  + D   ++  ++   G          
Sbjct: 97  -CEI--LREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSA 153

Query: 205 LIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           LI  +CN  KV E  +L +++L      P+   +  LI  FC+  N  +  ++L  M  R
Sbjct: 154 LITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGR 213

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  +++GLCK+    +A  +F  +  +G VP+ V YTT+IHGLC    +  A
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 273

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           R +  EM      P+  +YN+++ GYCR+  +EEAK+L KEM  K      +TY  L+ G
Sbjct: 274 RLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRG 333

Query: 384 LCLHGRTDEAYHLFEEM-AQKGIFRDVITYNTLIQGYCKEGKIV 426
            C   R +EA  L E M    GI  DV+TY+ ++ GY +  + V
Sbjct: 334 FCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFV 377



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 163/357 (45%), Gaps = 20/357 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           +++ ++ + +   + PD+V+   L D   ++   + AM  L   +     PN  +    +
Sbjct: 167 ALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLL 226

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
             LC++G +++A   F ++   G   ++ T+ + + G     + D    L          
Sbjct: 227 HGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCP 286

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D +    L+  +C  G++ E  +L +++     +P+   +  L+  FC          L
Sbjct: 287 PDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFL 346

Query: 257 LHTM-VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L  M  A    PD  TY  V+ G  ++++ +EA     ++  R   P+ V Y+++I GLC
Sbjct: 347 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 406

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A ++   M++K + P+  T+NS+I   CR+ +++EA +L   M   G     V
Sbjct: 407 KAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMV 466

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI-------TYNTLIQGYCKEGKI 425
           TY TL+ G    GR + AY LFE M +K               ++ LI+G CK  +I
Sbjct: 467 TYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKAREI 523



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/357 (22%), Positives = 149/357 (41%), Gaps = 55/357 (15%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+ + L   L +A     A+D    + S G  PN  +    I  LC +  ++ A   
Sbjct: 217 PNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLL 276

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
             ++          ++N+ L G  ++ R +   +L+          D I    L++ FCN
Sbjct: 277 MDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCN 336

Query: 212 DGKVSEGYELLRQV-LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             ++ E   LL  +    G+ P+   ++ +++ +   K F   +E +  M+ARN AP+  
Sbjct: 337 ASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAV 396

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GLCK+ +   A  V  ++  +   P    + +VI  LC++G + +A K+   M
Sbjct: 397 TYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAM 456

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-------TYNTLIAG 383
              GL P   TY +++ G+ R   +E A  L + M  K    ++         ++ LI G
Sbjct: 457 AAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRG 516

Query: 384 LC-----------------------------------LHGRTDEAYHLFEEMAQKGI 405
           LC                                     GRT+EA  L   +++ G+
Sbjct: 517 LCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 69/314 (21%), Positives = 119/314 (37%), Gaps = 58/314 (18%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFF 93
           +E++QL+ E+A + C             L D  ++        R F       L   RF 
Sbjct: 306 EEAKQLFKEMATKSC-------------LPDRITYT----CLVRGFCNASR--LEEARFL 346

Query: 94  -QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
            + + +  G  PD+V+ +++      A+ F  A +F+    +   +PN  +    I  LC
Sbjct: 347 LENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLC 406

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           ++G ++ A      +    V  S+ T+NS                          +I A 
Sbjct: 407 KAGRVDHAMEVLKNMVNKRVEPSVGTFNS--------------------------VIGAL 440

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--------V 261
           C  G + E ++LL  +   GL P    +  L+  F          EL   M         
Sbjct: 441 CRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSS 500

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A N  P+   +  +I GLCK+R+  +A  V  +L+ R   P       ++ GL + G   
Sbjct: 501 AANLVPEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTE 559

Query: 322 DARKMWFEMIHKGL 335
           +A K+   +   GL
Sbjct: 560 EAGKLINSISKVGL 573


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 141/277 (50%), Gaps = 26/277 (9%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I+  C+    +EAF  F  +KE GV  +I+T NS L   +K++RT+  W LY        
Sbjct: 158 IKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY-------- 209

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
                          E+ R  ++  +      FN +I+  C++    +  + +  M    
Sbjct: 210 --------------AEMFRLRIKSSVY----TFNIMINVLCKEGKLKKAKDFVGHMETSG 251

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +++G C S +   A  +   +K +   PD+  Y ++I G+CK G L +A 
Sbjct: 252 VKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEAS 311

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++ EM+ KGL P+   YN++I G+C   NL+ A     EML KG   T  TYN+LI  L
Sbjct: 312 KIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +  RTDEA  + +E+ +KGI  D ITYN LI GYC+
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 163/328 (49%), Gaps = 12/328 (3%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N++ + L +    K A DF   ++++G  PN  +    +   C SG +E A    + +K 
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR 284

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
             +     T+ S + G  K  R +   K++ ++++ G          LI  FCN G +  
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDM 344

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                 ++L+ G+ P  + +N LI     ++       ++  +  +  +PD  TY  +IN
Sbjct: 345 ASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN 404

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C+     +A+ + +++   G  P    YT+++H L K   + +A  ++ ++  +G+LP
Sbjct: 405 GYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLP 464

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +   +N++I G+C   N++ A  L K+M         VT+NT++ G C  G+ +EA  LF
Sbjct: 465 DAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELF 524

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EM ++GI  D I++NTLI GY + G I
Sbjct: 525 DEMKRRGIKPDHISFNTLISGYSRRGDI 552



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 12/304 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V  N L D         +A  + D     G SP  ++    I  L      +EA
Sbjct: 321 GLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEA 380

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
            C   +++E G+     T+N  + G  +       + L+ +++ SG          L+  
Sbjct: 381 ECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                ++ E  +L +++  +G++P+   FN LI   C   N     ELL  M      PD
Sbjct: 441 LSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPD 500

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++ G C+  K  EA  +F+++K RG  PD + + T+I G  + G + DA ++  
Sbjct: 501 EVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRN 560

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G  P   TYN+++ G C+    + A+ L KEM+ KG      TY TLI G+    
Sbjct: 561 EMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620

Query: 389 RTDE 392
             DE
Sbjct: 621 IPDE 624



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 35/222 (15%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           YLI++ C+  +  E +E    + E G++P     N L+S F  K N    + +L+  + R
Sbjct: 156 YLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFL-KLNRTEAAWVLYAEMFR 214

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
            R                             +K   Y      +  +I+ LCK G L  A
Sbjct: 215 LR-----------------------------IKSSVYT-----FNIMINVLCKEGKLKKA 240

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +     M   G+ PN  TYN+++HGYC    +E A  +   M  +     + TY +LI+G
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +C  GR +EA  +FEEM QKG+    + YNTLI G+C +G +
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%)

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  ++ +I   C   +  EA+  F  +KE+G +P      +++    K+     A  ++ 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    +  + YT+N MI+  C+   L++AK     M   G     VTYNT++ G C  G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R + A  +   M ++ I  D  TY +LI G CK+G++
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRL 307


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 164/371 (44%), Gaps = 33/371 (8%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--------GFS---- 135
           L+++FF+W  S  GF     S  ++   +  AR +  A D +           GF     
Sbjct: 86  LALKFFKWAGSQVGFRHTTESYCIIVHLVFRARMYTDAHDTVKEVIMNSRMDMGFPVCNI 145

Query: 136 ------------PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
                             ++      E GL+EEA   FS+++        ++ N  L   
Sbjct: 146 FDMLWSTRNICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRL 205

Query: 184 IKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            K     LV K ++D+I +G          +I   C +G +     L  Q+ E GL P+ 
Sbjct: 206 SKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDV 265

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             +N LI  + +  +   V+ L + M      PD  TY  +IN  CK  K   A+  F++
Sbjct: 266 VTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSE 325

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +K  G  P+ V Y+T+I   CK G +  A K+  +M   GLLPNE+TY S+I   C+  N
Sbjct: 326 MKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGN 385

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L EA +L  +ML  G     VTY  L+ GLC  GR  EA  +F  M + GI  +   Y  
Sbjct: 386 LTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTA 445

Query: 415 LIQGYCKEGKI 425
           L+ GY K  ++
Sbjct: 446 LVHGYIKAERM 456



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/358 (26%), Positives = 176/358 (49%), Gaps = 19/358 (5%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFS 135
            L++ N     +R F+ L       P   SCN L   L ++   ++   F +     G +
Sbjct: 175 LLEEANECFSRMRNFRTL-------PKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIA 227

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +  + I  LC+ G +E +   F +++EMG+   + T+NS + G  K+   + V  L
Sbjct: 228 PSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASL 287

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           ++         D+I    LI  +C   K+   +E   ++  +GL P    ++ LI  FC+
Sbjct: 288 FNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCK 347

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +       +LL  M      P+ FTY  +I+  CK+    EA+++ ND+ + G   + V 
Sbjct: 348 EGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVT 407

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YT ++ GLCK G + +A +++  M+  G+ PN+  Y +++HGY + + +E+A ++ K+M 
Sbjct: 408 YTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMT 467

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +       + Y ++I G C   + +E   + EEM  +GI  + +   T+I  Y K GK
Sbjct: 468 ECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGK 525



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/366 (26%), Positives = 170/366 (46%), Gaps = 19/366 (5%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE------ARAFKVAMDF 128
           F    L +  N  L  +FF  +    G +P + + NV+ D L +      +R   V M  
Sbjct: 200 FLLHRLSKSGNGQLVRKFFNDMIGA-GIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR- 257

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
               G SP+  +    I    + G +EE    F+++K++G    I T+N  +    K ++
Sbjct: 258 --EMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEK 315

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
               ++ + ++  +G          LI AFC +G +    +LL  +   GL+P    +  
Sbjct: 316 MPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTS 375

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C+  N     +LL+ M+      +  TY  +++GLCK+ + +EA  VF  + + G
Sbjct: 376 LIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDG 435

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P+  +YT ++HG  K   + DA K+  +M    + P+   Y S+I G+C    LEE K
Sbjct: 436 ISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETK 495

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            + +EM  +G     V   T+I      G++ +A + F+EM   G+   ++TY  LI G 
Sbjct: 496 LILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGL 555

Query: 420 CKEGKI 425
           C+ G +
Sbjct: 556 CEAGIV 561



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 146/337 (43%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L +   +      A ++   + + G  PN  +    I   C+ G+++ A
Sbjct: 295 GCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGA 354

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 ++  G+  +  T+ S +    K       WKL +D++++G          L+  
Sbjct: 355 IKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDG 414

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E  E+ R +L+DG+ P    +  L+  + + +      ++L  M   N  PD
Sbjct: 415 LCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPD 474

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I G C  RK  E   +  ++K RG   + V+ TT+I    K G   DA   + 
Sbjct: 475 LILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQ 534

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G+     TY  +I G C    +E A      ML  G       Y +LI GLC + 
Sbjct: 535 EMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNN 594

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + A  LF+EM  +G+  D+  +  LI G  K G +
Sbjct: 595 CIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNL 631



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 159/372 (42%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ + L D+  +    + A+  L     TG  PN  +    I   C++G + EA
Sbjct: 330 GLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEA 389

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +   + + + GV  +I T+ + L G  K  R     +++  +++ G          L+  
Sbjct: 390 WKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHG 449

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +    ++ +  ++L+Q+ E  + P+   +  +I   C ++       +L  M +R  + +
Sbjct: 450 YIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISAN 509

Query: 269 ---------------------NF--------------TYEEVINGLCKSRKRLEAYRVFN 293
                                NF              TY  +I+GLC++     A   F 
Sbjct: 510 PVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFC 569

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +   G  P+  +YT++I GLC    +  A+K++ EM  +G+ P+   + ++I G  +  
Sbjct: 570 RMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHG 629

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           NL+EA  L   M +         Y +L++G    G   +A   F EM +KGI  + +   
Sbjct: 630 NLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCI 689

Query: 414 TLIQGYCKEGKI 425
            L++ Y K G++
Sbjct: 690 CLLREYYKRGQL 701



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 139/328 (42%), Gaps = 15/328 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   ++V+   L D L +A     A +   S    G SPN       +    ++  +E+A
Sbjct: 400 GVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDA 459

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CI--KIDRTDLVWK------LYHDLIESGYLIQA 208
                ++ E  +   +  + S + G C   K++ T L+ +      +  + + S  +I A
Sbjct: 460 MKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDA 519

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   GK S+     +++ + G+      +  LI   CE        +    M++    P+
Sbjct: 520 YFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPN 579

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLC +     A ++F++++ RG  PD   +T +I G  K G L +A  +  
Sbjct: 580 VAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLIS 639

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M    +  + + Y S++ G+ +   L +A++   EM++KG     V    L+      G
Sbjct: 640 RMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRG 699

Query: 389 RTDEAYHL---FEEMAQKGIFRDVITYN 413
           + DEA  L    E MA    F   + YN
Sbjct: 700 QLDEAIELKNEMERMAYSFEFDAQLAYN 727



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 107/269 (39%), Gaps = 29/269 (10%)

Query: 123 KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           K+ ++ + S G S NP      I    ++G   +A   F +++++GV  +I T+      
Sbjct: 495 KLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTY------ 548

Query: 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           C+ ID                      C  G V    +   ++L  GL P    +  LI 
Sbjct: 549 CVLID--------------------GLCEAGIVELAVDYFCRMLSLGLQPNVAVYTSLID 588

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C         +L   M  R   PD   +  +I+G  K     EA  + + + E     
Sbjct: 589 GLCXNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEF 648

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D  +YT+++ G  + G L  ARK + EMI KG+LP E     ++  Y +   L+EA  L 
Sbjct: 649 DLHVYTSLVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELK 708

Query: 363 KEMLDKGYG---ETTVTYNTLIAGLCLHG 388
            EM    Y    +  + YN     L LH 
Sbjct: 709 NEMERMAYSFEFDAQLAYNEQGVNLTLHA 737


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 162/339 (47%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   +L +CN+L +         +A+ FL      G  P+  +    +   C    I +A
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDA 170

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F ++ EMG   ++  +N+ + G  K  + D    L +         D +    LI  
Sbjct: 171 LYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISG 230

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+  +   ++  + +  + P+   FN LI    ++       EL   M+ R+  PD
Sbjct: 231 LCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPD 290

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I GLC   +  EA ++F  +  +G  PD V Y+ +I+G CK   +    K++ 
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G++ N  TY  +I GYCR   L  A+ + K M+  G     +TYN L+ GLC +G
Sbjct: 351 EMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNG 410

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + ++A  +  +M + G+  D++TYN +I+G CK G++ +
Sbjct: 411 KIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVAD 449



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 159/334 (47%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +   + L  ++ + + + V +   + +   G   N  +  + + C C    +  A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G    I T+ S L G  + DR      ++  ++E GY         +I   C 
Sbjct: 139 LGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCK 198

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V    +LL ++  DG+ P+   +N LIS  C    +   + ++  M  R   PD FT
Sbjct: 199 SKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFT 258

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+   K  +  EA  ++ ++  R   PD V Y+ +I+GLC    L +A +M+  M+
Sbjct: 259 FNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMV 318

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  P+  TY+ +I+GYC+   +E   +L  EM  +G    TVTY  LI G C  G+ +
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLN 378

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  +F+ M   G+  ++ITYN L+ G C  GKI
Sbjct: 379 VAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKI 412



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 175/379 (46%), Gaps = 14/379 (3%)

Query: 57  WEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL 116
           WEQ  +  IP       +    F +  + + L++ F   +    G  PD+V+   L +  
Sbjct: 104 WEQMQMLGIPHNLCTCNILLNCFCRC-SQLSLALSFLGKMM-KLGHEPDIVTFGSLLNGF 161

Query: 117 VEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
                   A+   D     G+ PN       I  LC+S  ++ A    ++++  G+    
Sbjct: 162 CRGDRIYDALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDA 221

Query: 174 KTWNSALLGCIKIDRTDLVWKL---------YHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
            T+NS + G     R D   ++         Y D+     LI A   +G++SE  EL  +
Sbjct: 222 VTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEE 281

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++   L P+   ++ LI   C         ++   MV++   PD  TY  +ING CKS+K
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKK 341

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
                ++F ++ +RG V +TV YT +I G C+ G L  A +++  M+  G+ PN  TYN 
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNV 401

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++HG C    +E+A  +  +M   G     VTYN +I G+C  G   +A+ L+  +  KG
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKG 461

Query: 405 IFRDVITYNTLIQGYCKEG 423
           +  D+ TY  ++ G  K+G
Sbjct: 462 LTPDIWTYTAMMLGLYKKG 480



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 143/318 (44%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++V  N + D L +++    A+D L+     G  P+  +    I  LC SG  ++A
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
               S + +  ++  + T+N+ +  C+K  R     +LY          D++    LI  
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYG 300

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  ++   ++  G  P+   ++ LI+ +C+ K      +L   M  R    +
Sbjct: 301 LCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C++ K   A  +F  +   G  P+ + Y  ++HGLC  G +  A  +  
Sbjct: 361 TVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILA 420

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+  +  TYN +I G C+   + +A  L+  +  KG      TY  ++ GL   G
Sbjct: 421 DMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKG 480

Query: 389 RTDEAYHLFEEMAQKGIF 406
              EA  LF +M + GI 
Sbjct: 481 LRGEADALFRKMKEDGIL 498



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/212 (28%), Positives = 104/212 (49%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K+ +  +L   +++   +P    F++L+S   + K +  V  L   M       +  T  
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            ++N  C+  +   A      + + G+ PD V + ++++G C+   + DA  M+  M+  
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMVEM 180

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  PN   YN++I G C+   ++ A  L   M   G     VTYN+LI+GLC  GR D+A
Sbjct: 181 GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDA 240

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +   M ++ I+ DV T+N LI    KEG+I
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRI 272



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 113/248 (45%), Gaps = 12/248 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N L D+ V+      A +  +        P+  +  L I  LC    ++EA   
Sbjct: 254 PDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQM 313

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  +   G F  + T++  + G  K  + +   KL+ ++ + G          LIQ +C 
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCR 373

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK++   E+ + ++  G+ P    +N L+   C+     +   +L  M       D  T
Sbjct: 374 AGKLNVAEEIFKWMVFCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVT 433

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I G+CK+ +  +A+ ++  L  +G  PD   YT ++ GL K G  G+A  ++ +M 
Sbjct: 434 YNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMK 493

Query: 332 HKGLLPNE 339
             G+LPNE
Sbjct: 494 EDGILPNE 501



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/156 (24%), Positives = 75/156 (48%)

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y E++    +  K  ++  +F  + +   +P    ++ ++  + KM        +W +M 
Sbjct: 49  YREMLRNGIRYMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQ 108

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+  N  T N +++ +CR   L  A     +M+  G+    VT+ +L+ G C   R  
Sbjct: 109 MLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIY 168

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +A ++F+ M + G   +V+ YNT+I G CK  ++ N
Sbjct: 169 DALYMFDRMVEMGYEPNVVIYNTIIDGLCKSKQVDN 204


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 170/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+    N+ F +  +      AMD  +     G SP+  S    I  LC+ G +++A
Sbjct: 25  GISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDA 84

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++   GV  +I  ++S + G   ID+ + V +L+ +++  G          ++  
Sbjct: 85  EVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCN 144

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V EG  L+  +   G+ P+  ++N LI   C        S+LL  MV+    P+
Sbjct: 145 LCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPN 204

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +F+Y  +++G CK+ +   AY +F  +   G  P  V Y T++HGL +     +A++++ 
Sbjct: 205 SFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYL 264

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI+ G     YTYN++++G C+ + ++EA ++ + +  KG     +T+  +I  L   G
Sbjct: 265 NMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 324

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  LF  +   G+  DV+TY  + +   +EG +
Sbjct: 325 RKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSL 361



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 141/297 (47%), Gaps = 26/297 (8%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           ++ + + G SPN +   ++     + G+I++A   F+K+++ G                 
Sbjct: 18  LNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG----------------- 60

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
                    L  D +  G LI A C  G+V +      Q++ +G+ P    F+ L+   C
Sbjct: 61  ---------LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLC 111

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
               + +V EL   M+     P+   +  ++  LCK  + +E  R+ + ++  G  PD +
Sbjct: 112 SIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVI 171

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T+I G C  G + +A K+   M+  GL PN ++YN+++HGYC+   ++ A  L ++M
Sbjct: 172 SYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKM 231

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           L  G     VTYNT++ GL    R  EA  L+  M   G    + TYNT++ G CK 
Sbjct: 232 LSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGLCKS 288



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 120/221 (54%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++  + N G +SE ++LL  ++ +G+ P +  FN   S + +     +  ++ + M    
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  +Y  +I+ LCK  +  +A   FN +   G  P+ V+++++++GLC +       
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVE 120

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++FEM++ G+ PN   +N+++   C+   + E +RL   +   G     ++YNTLI G 
Sbjct: 121 ELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGH 180

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           CL G  DEA  L E M   G+  +  +YNTL+ GYCK G+I
Sbjct: 181 CLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRI 221



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/349 (23%), Positives = 146/349 (41%), Gaps = 22/349 (6%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEA-----RAFKVAMDFLD--STGFSPNPNSLE 142
           ++F Q ++   G +P++V    +F SLV       +  KV   F +  + G  PN     
Sbjct: 86  VKFNQMINE--GVTPNIV----VFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFN 139

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             +  LC+ G + E       ++ MGV   + ++N+ + G       D   KL   ++  
Sbjct: 140 TILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSV 199

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          L+  +C  G++   Y L R++L +G+ P    +N ++    + K F   
Sbjct: 200 GLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEA 259

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            EL   M+        +TY  ++NGLCKS    EA+++F  L  +G   + + +T +I  
Sbjct: 260 KELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGA 319

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L K G   DA  ++  +   GL+P+  TY  +        +LEE   L   M   G    
Sbjct: 320 LLKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPN 379

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +   N L+  L   G    A     ++ ++    +  T + LI  +  +
Sbjct: 380 SQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSD 428



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 108/276 (39%), Gaps = 12/276 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S N L D    A     A   L+   S G  PN  S    +   C++G I+ A
Sbjct: 165 GVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSA 224

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +  F K+   G+   + T+N+ L G  +  R     +LY ++I SG          ++  
Sbjct: 225 YSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNG 284

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    V E +++ + +   GL      F  +I    +        +L   + A    PD
Sbjct: 285 LCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPD 344

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  V   L +     E   +F+ +++ G  P++ M   ++  L   G +  A     
Sbjct: 345 VVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 404

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           ++  +       T + +I  +   +    AK L K+
Sbjct: 405 KLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKK 440



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 74/140 (52%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           E + + N +   G  P+  ++        K G +  A  ++ +M   GL P+  +Y ++I
Sbjct: 13  EMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALI 72

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
              C++  +++A+    +M+++G     V +++L+ GLC   + ++   LF EM   GI 
Sbjct: 73  DALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIH 132

Query: 407 RDVITYNTLIQGYCKEGKIV 426
            +++ +NT++   CKEG+++
Sbjct: 133 PNIVFFNTILCNLCKEGRVM 152


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+V+ + L +     +    A+  +D      + PN  +    I  L       EA
Sbjct: 129 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEA 188

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQA 208
                ++   G    + T+ + + G  K    DL           K+  D++    +I A
Sbjct: 189 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDA 248

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN   V++   L  ++   G+ P    +N LI   C    +   S LL  M+ R   P+
Sbjct: 249 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 308

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K +EA ++++++ +R   PD   Y+++I+G C    L +A+ M+ 
Sbjct: 309 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 368

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI K   PN  TYN++I G+C+   +EE   L +EM  +G    TVTYNTLI GL   G
Sbjct: 369 LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 428

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F++M   G+  D+ITY+ L+ G CK GK+
Sbjct: 429 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 465



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 163/336 (48%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           + P+ V+ N L   L    +A      +D + + G  P+  +    +  LC+ G I+ A 
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               K+++  +   +  + + +         +    L+ ++   G          LI+  
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           CN G+ S+   LL  ++E  + P    F+ LI  F ++       +L   M+ R+  PD 
Sbjct: 285 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           FTY  +ING C   +  EA  +F  +  +   P+ V Y T+I G CK   + +  +++ E
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFRE 404

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +GL+ N  TYN++I G  +  + + A+++ K+M+  G     +TY+ L+ GLC +G+
Sbjct: 405 MSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGK 464

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++A  +FE + +  +  D+ TYN +I+G CK GK+
Sbjct: 465 LEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKV 500



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 152/332 (45%), Gaps = 14/332 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V    + D+L   +    A++    +D+ G  PN  +    I+CLC  G   +A    
Sbjct: 238 DVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLL 297

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
           S + E  +  ++ T+++ +   +K  +     KLY ++I+            LI  FC  
Sbjct: 298 SDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMH 357

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            ++ E   +   ++     P    +N LI  FC+ K      EL   M  R    +  TY
Sbjct: 358 DRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTY 417

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I GL ++     A ++F  +   G  PD + Y+ ++ GLCK G L  A  + FE + 
Sbjct: 418 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKAL-VVFEYLQ 476

Query: 333 KGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           K  + P+ YTYN MI G C+   +E+   L   +  KG     + Y T+I+G C  G  +
Sbjct: 477 KSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 536

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EA  LF EM + G   +  TYNTLI+   ++G
Sbjct: 537 EADALFREMKEDGTLPNSGTYNTLIRARLRDG 568



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 149/351 (42%), Gaps = 79/351 (22%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGY 204
           +++A   F ++ +     SI  +N  L    K+++ DLV          ++ +DL     
Sbjct: 45  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   ++     +L ++++ G  P+    + L++ +C  K       L+  M    
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL---- 320
             P+  T+  +I+GL    K  EA  + + +  RG  PD   Y TV++GLCK G +    
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 321 -------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
                                           DA  ++ EM +KG+ PN  TYNS+I   
Sbjct: 225 SLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 284

Query: 350 CR-----------------------------ID------NLEEAKRLHKEMLDKGYGETT 374
           C                              ID       L EA++L+ EM+ +      
Sbjct: 285 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 344

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TY++LI G C+H R DEA H+FE M  K  F +V+TYNTLI+G+CK  ++
Sbjct: 345 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRV 395



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 149/329 (45%), Gaps = 14/329 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++V+ N L   L      + A ++  D ++    +PN  +    I    + G + E
Sbjct: 269 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVE 327

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A   + ++ +  +   I T++S + G    DR D    ++  +I             LI+
Sbjct: 328 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 387

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   +V EG EL R++ + GLV     +N LI    +  +     ++   MV+    P
Sbjct: 388 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 447

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++GLCK  K  +A  VF  L++    PD   Y  +I G+CK G + D   ++
Sbjct: 448 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 507

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ PN   Y +MI G+CR    EEA  L +EM + G    + TYNTLI      
Sbjct: 508 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIRARLRD 567

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           G    +  L +EM   G   D  T + +I
Sbjct: 568 GDKAASAELIKEMRSCGFVGDASTISMVI 596



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 99/209 (47%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K+ +  +L  ++++   +P    FNKL+S   +   F  V  L   M     + D ++
Sbjct: 42  DLKLDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYS 101

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +IN  C+  +   A  V   + + GY PD V  +++++G C    + +A  +  +M 
Sbjct: 102 YNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMF 161

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                PN  T+N++IHG    +   EA  L   M+ +G      TY T++ GLC  G  D
Sbjct: 162 VMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDID 221

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            A  L ++M +  I  DV+ Y T+I   C
Sbjct: 222 LALSLLKKMEKGKIEADVVIYTTIIDALC 250



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 49/232 (21%), Positives = 99/232 (42%), Gaps = 27/232 (11%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    I+  C++  +EE    F ++ + G+ G+  T+N+ + G  +    D+  K+
Sbjct: 377 PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKI 436

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +  ++  G          L+   C  GK+ +   +   + +  + P+   +N +I   C+
Sbjct: 437 FKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCK 496

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   +L  ++  +   P+   Y  +I+G C+   + EA  +F ++KE G +P++  
Sbjct: 497 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGT 556

Query: 307 YTTVIHGLCK----------------MGWLGDAR--KMWFEMIHKGLLPNEY 340
           Y T+I    +                 G++GDA    M   M+H G L   Y
Sbjct: 557 YNTLIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVINMLHDGRLEKSY 608


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 167/333 (50%), Gaps = 12/333 (3%)

Query: 104 PDLVSCNVLFDSL-VEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+LVS N + +    E +  K    FLD T  G  PN  +  + I  LC++ +++ A   
Sbjct: 202 PNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVDRAEGV 261

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F ++ + GV  +I T+   + G + I +   V ++           D    G L+   C 
Sbjct: 262 FQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLLDYLCK 321

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK +E  +L   ++  G+ P+ + +  ++  +  K     +   L  MV    +P+++ 
Sbjct: 322 KGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYI 381

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  V     K     EA  +FN ++++G  P+ V Y T+I  LCK+G + DA   + +MI
Sbjct: 382 FNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMI 441

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           ++G+ PN   + S+++G C ID  E+A  L  EM+++G     V +NT++  LC  GR  
Sbjct: 442 NEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVM 501

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +A  L + M + G   D+I+YN LI+G+C  GK
Sbjct: 502 KAQRLIDLMERVGTRPDIISYNALIRGHCLVGK 534



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+    N++F +  +      AMD  +     G SPN  +    I  LC+ G +++A
Sbjct: 374 GISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDA 433

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++   GV  +I  + S + G   ID+ +   +L+ +++  G          ++  
Sbjct: 434 ELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCN 493

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V +   L+  +   G  P+  ++N LI   C        S+LL  M++    P+
Sbjct: 494 LCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPN 553

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C+  +  +AY VF ++   G  P  V Y T++HGL K     +A++++ 
Sbjct: 554 ECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYL 613

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  G   + YTYN +++G  + + ++EA ++ + +  K      +T+N +I  L   G
Sbjct: 614 NMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDG 673

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A +LF  ++  G+  DV TY  + +   +EG +
Sbjct: 674 RKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSL 710



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 138/295 (46%), Gaps = 29/295 (9%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P+  +  + + C C  G +E  F AF  + + G       W    +             
Sbjct: 91  APDVFTYSILVGCFCRMGRLEHGFAAFGLILKTG-------WRVNDV------------- 130

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYE-LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
                +    L++  C+  +V E    LLR++ E G  P   ++N L+  FC++      
Sbjct: 131 -----VVVNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEA 185

Query: 254 SELLHTMV---ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            ELLH M     R+  P+  +Y  VING     +  +AY +F D+ ++G  P+ V YT V
Sbjct: 186 LELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIV 245

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I GLCK   +  A  ++ +MI KG+ PN  TY  +IHGY  I   +E  R+ KEM   G 
Sbjct: 246 IDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGL 305

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                TY  L+  LC  G+  EA  LF+ M +KGI  DV  Y  ++ GY  +G +
Sbjct: 306 EPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGAL 360



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 150/336 (44%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+    ++        A      FLD     G SPN     +      +  +I EA
Sbjct: 339 GIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIVFCAFAKKAMIGEA 398

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+K+++ G+  ++  + + +    K+ R D     ++ +I  G          L+  
Sbjct: 399 MDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYG 458

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K  +  EL  +++  G+ P    FN ++   C +    +   L+  M      PD
Sbjct: 459 LCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPD 518

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I G C   K  EA ++ + +   G  P+   Y T++HG C+ G + DA  ++ 
Sbjct: 519 IISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQ 578

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+ P   TYN+++HG  +     EAK L+  M+  G   +  TYN ++ GL  + 
Sbjct: 579 EMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNN 638

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             DEA  +F+ +  K +  D+IT+N +I    K+G+
Sbjct: 639 CVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGR 674



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 142/325 (43%), Gaps = 20/325 (6%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           L D+     A  V +  +   G +PN  S    ++  C+    EEA     +L  M   G
Sbjct: 140 LCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEAL----ELLHMMADG 195

Query: 172 SIK-------TWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            ++       ++N+ + G     + D  + L+ D+ + G          +I   C    V
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                + +Q+++ G+ P    +  LI  +     +  V  +L  M A    PD FTY  +
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLL 315

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ++ LCK  K  EA ++F+ +  +G  PD  +Y  ++HG    G L +       M+  G+
Sbjct: 316 LDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGI 375

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN Y +N +   + +   + EA  +  +M  +G     V Y TLI  LC  GR D+A  
Sbjct: 376 SPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAEL 435

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYC 420
            F +M  +G+  +++ + +L+ G C
Sbjct: 436 KFNQMINEGVAPNIVVFTSLVYGLC 460



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 130/294 (44%), Gaps = 13/294 (4%)

Query: 145 IQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------ 197
           ++ LC++  + EA      ++ E+G   ++ ++N+ L G    +R +   +L H      
Sbjct: 137 LKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADGQ 196

Query: 198 ------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                 +L+    +I  F  +G+V + Y L   + + G+ P    +  +I   C+ +   
Sbjct: 197 VRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVVD 256

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           R   +   M+ +   P+  TY  +I+G     +  E  R+  ++   G  PD   Y  ++
Sbjct: 257 RAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEMSAHGLEPDCFTYGLLL 316

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             LCK G   +ARK++  MI KG+ P+   Y  ++HGY     L E       M+  G  
Sbjct: 317 DYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGIS 376

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                +N +           EA  +F +M Q+G+  +V+ Y TLI   CK G++
Sbjct: 377 PNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRV 430



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 76/345 (22%), Positives = 148/345 (42%), Gaps = 14/345 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQ 146
           ++F Q ++   G +P++V    L   L     ++ A +    + + G  PN       + 
Sbjct: 435 LKFNQMINE--GVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIMC 492

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC  G + +A      ++ +G    I ++N+ + G   + +TD   KL   ++  G   
Sbjct: 493 NLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKP 552

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  L+  +C DG++ + Y + +++L +G+ P    +N ++    + + F    EL 
Sbjct: 553 NECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELY 612

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+   +    +TY  ++NGL K+    EA ++F  L  +    D + +  +I  L K 
Sbjct: 613 LNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKD 672

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA  ++  +   GL+P+  TY  +        +LEE   +  EM   G    ++  
Sbjct: 673 GRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLML 732

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           N L+  L L G    A     ++ +K    +  T + LI  + +E
Sbjct: 733 NFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSRE 777


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 171/371 (46%), Gaps = 47/371 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ + L + L      + AMD L+     G  P   +  + +  LC++G   EA
Sbjct: 267 GCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEA 326

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
                K+K+ G   +I+T+ + + G  +  + ++   LYH ++  G              
Sbjct: 327 VELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQ 386

Query: 205 -------------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          +I+ FC  G + +   +  ++L+ G  P 
Sbjct: 387 LCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPN 446

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N LI  +C++ N      LL  M      PD +TY E+I+G  +  K   A  +F 
Sbjct: 447 VITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFY 506

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            + E G  P+ V YT +I G   +  + DA  ++++M+  G LP+  TYN MI G+ + +
Sbjct: 507 GMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTN 566

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++ EA+    +M+ +G     +TY + I GLC +GRT  A+ +F EM ++  F ++ TY+
Sbjct: 567 SISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYS 626

Query: 414 TLIQGYCKEGK 424
           +LI G C+EG+
Sbjct: 627 SLIYGLCQEGR 637



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 155/340 (45%), Gaps = 29/340 (8%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQC 147
           +F   ++S Y F   L S   L   L +     +A D    + ++G  P+  +    I  
Sbjct: 152 QFLSEINSKYDFGYTLCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINI 211

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           LC+ G ++EA    S +     + +  T+ S +LG                         
Sbjct: 212 LCKKGRVQEAKLIMSHIFRYDAYPNAFTYTSLILG------------------------- 246

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C +  +   + +  ++++DG  P +  ++ LI+  C +       ++L  MV +   P
Sbjct: 247 -HCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEGRLEEAMDMLEEMVQKGIEP 305

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             +TY   +  LC +    EA  +   +K+RG VP+   +T +I GL + G    A  ++
Sbjct: 306 TVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLY 365

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  GL+P   TYN++I+  C     E A  + K ML  G   +T TYN +I   CL 
Sbjct: 366 HKMLADGLVPTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLM 425

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G   +A  +F++M + G   +VITYNTLI GYCK+G + N
Sbjct: 426 GDIQKAMVIFDKMLKAGSSPNVITYNTLIYGYCKQGNLNN 465



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 151/330 (45%), Gaps = 33/330 (10%)

Query: 101 GFSPDLVSCNVLFDSL-VEAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P  V+ N L + L VE R   AF +   ++ S G  P+  +    I+C C  G I++
Sbjct: 372 GLVPTTVTYNALINQLCVEGRFETAFTI-FKWMLSHGSLPSTQTYNEIIKCFCLMGDIQK 430

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A   F K+ + G   ++ T+N+                          LI  +C  G ++
Sbjct: 431 AMVIFDKMLKAGSSPNVITYNT--------------------------LIYGYCKQGNLN 464

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
               LL  +  +GL P+   + +LIS F         + L + M+    +P++ TY  +I
Sbjct: 465 NAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGISPNHVTYTAII 524

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G     K  +A  +F  + E G +P +  Y  +I G  K   + +A     +M+ +GLL
Sbjct: 525 DGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLL 584

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA--Y 394
           PN  TY S I G CR      A ++  EM  + Y     TY++LI GLC  GR ++A  Y
Sbjct: 585 PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMY 644

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +L   +   G   +V TY TL++G C EG+
Sbjct: 645 NLLARLTHYGCEPNVDTYTTLVKGLCGEGR 674



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 146/338 (43%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++++ N L     +      AM  L+     G  P+  +    I      G +E A
Sbjct: 442 GSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHA 501

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F  + E G+  +  T+ + + G   + + D    L+  ++ESG L         I  
Sbjct: 502 TSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISG 561

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F     +SE      ++++ GL+P    +   I   C     G   ++ H M  RN  P+
Sbjct: 562 FSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPN 621

Query: 269 NFTYEEVINGLCKSRKRLEA--YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            +TY  +I GLC+  +  +A  Y +   L   G  P+   YTT++ GLC  G   +A ++
Sbjct: 622 LYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQL 681

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M  KGL P+E  Y +++ G C+   +E A  +   M   G+      Y  LI  LC 
Sbjct: 682 VVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCK 741

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               +EA  +F+ M +K    D + +  L+ G  KEG+
Sbjct: 742 ENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGE 779



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 158/354 (44%), Gaps = 21/354 (5%)

Query: 89  SIRFFQWLHSHYGFSP------DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLE 142
           +   F+W+ SH G  P      +++ C  L   + +A    V  D +   G SPN  +  
Sbjct: 396 AFTIFKWMLSH-GSLPSTQTYNEIIKCFCLMGDIQKAM---VIFDKMLKAGSSPNVITYN 451

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             I   C+ G +  A      +K  G+     T+   + G  +  + +    L++ ++E 
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          +I  + N  KV +   L  +++E G +P +  +N +IS F +  +    
Sbjct: 512 GISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEA 571

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
                 MV +   P+  TY   I+GLC++ +   A+++F+++++R Y P+   Y+++I+G
Sbjct: 572 ENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYG 631

Query: 314 LCKMGWLGDAR--KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           LC+ G   DA    +   + H G  PN  TY +++ G C      EA +L   M  KG  
Sbjct: 632 LCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQ 691

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   Y  L+ G C + + + A ++F  M   G    +  Y  LI   CKE  I
Sbjct: 692 PSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDYKALICALCKENFI 745


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 154/344 (44%), Gaps = 13/344 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           R F  L    G S  +V+ N + +    A   + A   ++   F P+  +    I+ LC 
Sbjct: 208 RVFAAL----GPSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCV 263

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIE 201
            G I +A   F  +   G   S+ T++  L    K         L           D++ 
Sbjct: 264 RGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVT 323

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI A CN+G V E   +L  +   G  P+   +  ++   C  + +  V ELL  M 
Sbjct: 324 YNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMT 383

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           + N APD  T+  ++  LC+      A  V + + E G V D V Y++++ GLC +G + 
Sbjct: 384 SNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVD 443

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA ++   +   G  P+   Y +++ G C  +  E A+ L  EML        VT+NT++
Sbjct: 444 DAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVV 503

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A LC  G  D A  + E+M++ G   D++TYN +I G C E  I
Sbjct: 504 ASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCI 547



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 149/325 (45%), Gaps = 29/325 (8%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G SP +V+ ++L D+  +   ++ AM  LD   + G  P+  +  + I  +C  G ++
Sbjct: 279 HRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVD 338

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EA    S L   G      T+   L                          ++ C   + 
Sbjct: 339 EALNILSNLPSHGCKPDAVTYTPVL--------------------------KSLCGSERW 372

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  ELL ++  +   P+   FN +++  C++    R  E++  M       D  TY  +
Sbjct: 373 KEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSI 432

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ++GLC   +  +A  + + LK  G  PDT+ YTTV+ GLC       A ++  EM+    
Sbjct: 433 LDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDC 492

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P+E T+N+++   C+   ++ A R+ ++M + G     VTYN +I GLC     D+A  
Sbjct: 493 PPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAME 552

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYC 420
           L  ++   G   D++T+NTL++G C
Sbjct: 553 LLSDLQSCGCKPDIVTFNTLLKGLC 577



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 30/345 (8%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPN 139
           + +V  ++     L SH G  PD V+   +  SL  +  +K   + L    S   +P+  
Sbjct: 334 EGDVDEALNILSNLPSH-GCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEV 392

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +    +  LC+ GL++ A      + E G    I T++S L G                 
Sbjct: 393 TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDG----------------- 435

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                     C+ G+V +  ELL ++   G  P+  A+  ++   C  + + R  EL+  
Sbjct: 436 ---------LCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAE 486

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+  +  PD  T+  V+  LC+      A RV   + E G  PD V Y  +I GLC    
Sbjct: 487 MLCSDCPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESC 546

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + DA ++  ++   G  P+  T+N+++ G C +D  E+A++L   M+        +T+NT
Sbjct: 547 IDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNT 606

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +I  LC  G   +A    + MA+ G   +  TY+ ++    K GK
Sbjct: 607 VITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGK 651



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 145/347 (41%), Gaps = 15/347 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYI 145
           ++     L S YG  PD ++   +   L     ++ A + +     +   P+  +    +
Sbjct: 445 AVELLSRLKS-YGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVV 503

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
             LC+ GL++ A     ++ E G    I T+N  + G       D   +L  DL   G  
Sbjct: 504 ASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCK 563

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L++  C   +  +  +L+  ++     P+   FN +I+  C+K    +  E 
Sbjct: 564 PDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIET 623

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M      P++ TY  V++ L K+ K   A  + + +      PD + Y TVI  L K
Sbjct: 624 LKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMTNG--TPDLITYNTVISNLTK 681

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +A  +   M+  GL P+  TY S+ +G CR D  + A R+ + + D G    T  
Sbjct: 682 AGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTF 741

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           YN ++ G C   RTD A   F  M   G   D  TY  L++     G
Sbjct: 742 YNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGG 788



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 84/316 (26%), Positives = 139/316 (43%), Gaps = 16/316 (5%)

Query: 104 PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           PD V+ N +  SL +     RA +V ++ +   G SP+  +    I  LC    I++A  
Sbjct: 494 PDEVTFNTVVASLCQKGLVDRAIRV-VEQMSENGCSPDIVTYNCIIDGLCNESCIDDAME 552

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
             S L+  G    I T+N+ L G   +DR +   +L  +++ S           +I + C
Sbjct: 553 LLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLC 612

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G +++  E L+ + E+G VP ++ ++ ++    +        ELL  M   N  PD  
Sbjct: 613 QKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGMT--NGTPDLI 670

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  VI+ L K+ K  EA  +   +   G  PDT  Y ++ +G+C+      A +M   +
Sbjct: 671 TYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRRV 730

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              GL P+   YN ++ G+CR    + A      M+  G      TY  L+  L   G  
Sbjct: 731 QDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLL 790

Query: 391 DEAYHLFEEMAQKGIF 406
           DEA  L   +   G+ 
Sbjct: 791 DEAKRLLASLCSLGVL 806



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/256 (23%), Positives = 113/256 (44%), Gaps = 29/256 (11%)

Query: 199 LIESGYLIQAFCNDGKVSE----------------------GY------ELLRQVLEDGL 230
           ++    LI+  C+DG+VS+                      GY      E  R+++    
Sbjct: 187 VVPCNILIKRLCSDGRVSDAERVFAALGPSATVVTYNTMVNGYCRAGRIEDARRLINGMP 246

Query: 231 VPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
            P +T  FN LI   C +        +   M+ R  +P   TY  +++  CK     +A 
Sbjct: 247 FPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAM 306

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            + ++++ +G  PD V Y  +I+ +C  G + +A  +   +   G  P+  TY  ++   
Sbjct: 307 ALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSL 366

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C  +  +E + L  EM         VT+NT++  LC  G  D A  + + M++ G   D+
Sbjct: 367 CGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADI 426

Query: 410 ITYNTLIQGYCKEGKI 425
           +TY++++ G C  G++
Sbjct: 427 VTYSSILDGLCDVGRV 442



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/217 (28%), Positives = 100/217 (46%), Gaps = 8/217 (3%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGL--VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +++    G++ E   L   +   G    P     N LI R C     GRVS+      A 
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSD---GRVSDAERVFAAL 213

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             +    TY  ++NG C++ +  +A R+ N +    + PDT  +  +I  LC  G + DA
Sbjct: 214 GPSATVVTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVRGRIPDA 270

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M+H+G  P+  TY+ ++   C+     +A  L  EM  KG     VTYN LI  
Sbjct: 271 LAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINA 330

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +C  G  DEA ++   +   G   D +TY  +++  C
Sbjct: 331 MCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLC 367



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 81/347 (23%), Positives = 132/347 (38%), Gaps = 54/347 (15%)

Query: 40  YTEIAKQVCKIT---RTKPRWEQTLLSDIPS--FNFNDPLFFREFLKQQNNVLLSIRFFQ 94
           YT + K +C      R +    + L SD P     FN        L Q+  V  +IR  +
Sbjct: 464 YTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFN---TVVASLCQKGLVDRAIRVVE 520

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPN-------------- 137
            + S  G SPD+V+ N + D L        AM+ L    S G  P+              
Sbjct: 521 QM-SENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGV 579

Query: 138 -------------------PNSLEL--YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
                              P+ L     I  LC+ GL+ +A      + E G   +  T+
Sbjct: 580 DRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTY 639

Query: 177 NSALLGCIKIDRTDLVWKLYH-------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
           +  +   +K  +     +L         DLI    +I      GK+ E  +LLR ++ +G
Sbjct: 640 SIVVDALLKAGKAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNG 699

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           L P+ T +  L    C +    R   +L  +     +PD   Y +V+ G C+ R+   A 
Sbjct: 700 LCPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAI 759

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
             F  +   G +PD   Y  ++  L   G L +A+++   +   G+L
Sbjct: 760 DCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLGVL 806


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/392 (27%), Positives = 174/392 (44%), Gaps = 49/392 (12%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSP 136
           L +   +  ++R F+ + +  G +P+ V  + L   L +AR    A++ L        +P
Sbjct: 136 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW-KL 195
           +  +  + I  LC+SG +E A   F ++ E G    + T+N  + G  K   TD     L
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSL 254

Query: 196 YHDLIESGYLIQA---------FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             +   +G  I              + K+ E   L+ ++  +G  P    +N L++  C+
Sbjct: 255 AQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCK 314

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY------ 300
                   +LL  +V     PD  TY  +I+GL K ++  EAY++F ++  RG       
Sbjct: 315 MGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVC 374

Query: 301 -----------------------------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
                                        VPD V  +T+I GL K G +G A +++  M 
Sbjct: 375 YTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSME 434

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +GL PNE  Y+++IHG C+   ++ A  +  +M        T+TYN LI GLC  G  +
Sbjct: 435 ARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVE 494

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A   F+EM + G   DV TYN LI G+CK G
Sbjct: 495 AARAFFDEMLEAGCKPDVYTYNILISGFCKAG 526



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 161/367 (43%), Gaps = 48/367 (13%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESG------- 152
           +PD ++ NVL D L ++   + A  F D     G  P+  +  + I   C++G       
Sbjct: 193 TPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASH 252

Query: 153 -----------------------------LIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
                                         IEEA     K+   G   +I T+N+ L G 
Sbjct: 253 SLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGL 312

Query: 184 IKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            K+ R +    L   ++++G          LI     + +  E Y+L +++   GL  + 
Sbjct: 313 CKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDT 372

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             +  LI    +     + S +  TM +    PD  T   +I+GL K+ +   A R+F  
Sbjct: 373 VCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKS 432

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           ++ RG  P+ V+Y+ +IHGLCK   +  A +M  +M      P+  TYN +I G C+  +
Sbjct: 433 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 492

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +E A+    EML+ G      TYN LI+G C  G TD A  +F++M+      +V+TY  
Sbjct: 493 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGA 552

Query: 415 LIQGYCK 421
           LI G CK
Sbjct: 553 LISGLCK 559



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 150/342 (43%), Gaps = 45/342 (13%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           M+ + + G +P   +    +  LC+ G +EEA     K+ + G    + T+ S + G  K
Sbjct: 9   MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 68

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFC---------NDGKVSEGYELLRQVLEDGLVPENTA 236
             R+   +KL+ ++   G  +   C           GK+ +   + + +   G VP+   
Sbjct: 69  EKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVT 128

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            + +I    +    G    +  +M AR  AP+   Y  +I+GLCK+RK   A  +   +K
Sbjct: 129 LSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 188

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-- 354
           +    PDT+ Y  +I GLCK G +  AR  + EM+  G  P+ YTYN +I G+C+  N  
Sbjct: 189 KAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTD 248

Query: 355 ----------------------------------LEEAKRLHKEMLDKGYGETTVTYNTL 380
                                             +EEA  L +++   G   T  TYN L
Sbjct: 249 AASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNAL 308

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           + GLC  GR +EA  L  ++   G   DV+TY +LI G  KE
Sbjct: 309 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKE 350



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 128/270 (47%), Gaps = 26/270 (9%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           IEEA     K+   G   +I T+N+                          L+   C  G
Sbjct: 2   IEEAVALMEKITANGCTPTIATYNA--------------------------LLNGLCKMG 35

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           ++ E  +LLR+++++G  P+   +  LI    ++K      +L   M  R  A D   Y 
Sbjct: 36  RLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYT 95

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I  L ++ K  +A  V+  +   G VPD V  +T+I GL K G +G A +++  M  +
Sbjct: 96  ALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEAR 155

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           GL PNE  Y+++IHG C+   ++ A  +  +M        T+TYN LI GLC  G  + A
Sbjct: 156 GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAA 215

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              F+EM + G   DV TYN LI G+CK G
Sbjct: 216 RAFFDEMLEAGCKPDVYTYNILISGFCKAG 245



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 181/416 (43%), Gaps = 37/416 (8%)

Query: 8   VLTILRQNPRNFQNPNTQLRNLSIE-------TKESQQLYTEIAKQVCKITRTKPRWEQT 60
            L +L Q  + F  P+T   N+ I+        + ++  + E+ +  CK           
Sbjct: 180 ALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCK----------- 228

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
              D+ ++N    +    F K  N    S    Q    + G + D+ +   + D L + +
Sbjct: 229 --PDVYTYN----ILISGFCKAGNTDAASHSLAQETTIN-GCTIDIHTYTAIVDWLAKNK 281

Query: 121 AFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
             + A   M+ + + G +P   +    +  LC+ G +EEA     K+ + G    + T+ 
Sbjct: 282 KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 341

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC---------NDGKVSEGYELLRQVLED 228
           S + G  K  R+   +KL+ ++   G  +   C           GK+ +   + + +   
Sbjct: 342 SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 401

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G VP+    + +I    +    G    +  +M AR  AP+   Y  +I+GLCK+RK   A
Sbjct: 402 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 461

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +   +K+    PDT+ Y  +I GLCK G +  AR  + EM+  G  P+ YTYN +I G
Sbjct: 462 LEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 521

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +C+  N + A  +  +M         VTY  LI+GLC   +  +A   F+ M ++G
Sbjct: 522 FCKAGNTDAACGVFDDMSSSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/212 (31%), Positives = 105/212 (49%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K+ E   L+ ++  +G  P    +N L++  C+        +LL  +V     PD  TY 
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+GL K ++  EAY++F ++  RG   DTV YT +I  L + G +  A  ++  M   
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G +P+  T ++MI G  +   +  A R+ K M  +G     V Y+ LI GLC   + D A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  +M +     D ITYN LI G CK G +
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDV 212


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 163/339 (48%), Gaps = 20/339 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +I FF ++     F    V CN +    V      VA+     ++      N  S  + I
Sbjct: 90  AIDFFDYMVRSRPFYT-AVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           +C C+   +  +   F KL ++G    + T+N+ L G    DR      L+  ++E+G  
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG-- 206

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
                          L  Q++E GL P    FN LI+  C +      + L++ MV +  
Sbjct: 207 --------------SLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGL 252

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  ++NG+CK      A  + + ++E    PD V+Y+ +I  LCK G   DA+ 
Sbjct: 253 HIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQY 312

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG+ PN +TYN MI G+C      +A+RL ++M+++      +T+N LI+   
Sbjct: 313 LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASV 372

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G+  EA  L +EM  + IF D +TYN++I G+CK  +
Sbjct: 373 KEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 411



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 170/381 (44%), Gaps = 59/381 (15%)

Query: 101 GFSPDLVSCNVLF------DSLVEARAFKVAM-------DFLDSTGFSPNPNSLELYIQC 147
           GF PD+V+ N L       D + EA A    M       D +   G +P   +    I  
Sbjct: 171 GFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLING 230

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------D 198
           LC  G + EA    +K+   G+   + T+ + + G  K+  T     L           D
Sbjct: 231 LCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPD 290

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE--- 255
           ++    +I   C DG  S+   L  ++LE G+ P    +N +I  FC   +FGR S+   
Sbjct: 291 VVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFC---SFGRWSDAQR 347

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  M+ R   PD  T+  +I+   K  K  EA ++ +++  R   PDTV Y ++I+G C
Sbjct: 348 LLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFC 407

Query: 316 KMGWLGDARKMW-------------------------------FEMIHKGLLPNEYTYNS 344
           K     DA+ M+                                E+  +GL+ N  TYN+
Sbjct: 408 KHNRFDDAKHMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 467

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +IHG+C +DNL  A+ L +EM+  G    T+T N L+ G C + + +EA  LFE +    
Sbjct: 468 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 527

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           I  D + YN +I G CK  K+
Sbjct: 528 IDLDTVAYNIIIHGMCKGSKV 548



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+   + + + +    K A++ L   + T   P+       I  LC+ G   +A
Sbjct: 251 GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDA 310

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              FS++ E G+  ++ T+N  + G     R     +L  D+IE            LI A
Sbjct: 311 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 370

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK+ E  +L  ++L   + P+   +N +I  FC+   F     +   M +    PD
Sbjct: 371 SVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PD 426

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+  C++++  E  ++  ++  RG V +T  Y T+IHG C++  L  A+ ++ 
Sbjct: 427 VVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQ 486

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G+ P+  T N +++G+C  + LEEA  L + +        TV YN +I G+C   
Sbjct: 487 EMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGS 546

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA+ LF  +   G+  DV TYN +I G+C +  I
Sbjct: 547 KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 583



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 151/330 (45%), Gaps = 13/330 (3%)

Query: 94  QWLHSHY---GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           Q+L S     G +P++ + N + D        + A ++  D ++    +P+  +    I 
Sbjct: 311 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE-INPDVLTFNALIS 369

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIE 201
              + G + EA     ++    +F    T+NS + G  K +R D    ++      D++ 
Sbjct: 370 ASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVT 429

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +I  +C   +V EG +LLR++   GLV   T +N LI  FCE  N     +L   M+
Sbjct: 430 FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMI 489

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +    PD  T   ++ G C++ K  EA  +F  ++      DTV Y  +IHG+CK   + 
Sbjct: 490 SHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 549

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  ++  +   G+ P+  TYN MI G+C    + +A  L  +M D G+     TYNTLI
Sbjct: 550 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 609

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            G    G  D++  L  EM   G   D  T
Sbjct: 610 RGCLKAGEIDKSIELISEMRSNGFSGDAFT 639



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 63/127 (49%), Gaps = 10/127 (7%)

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           VI    +M     A  ++ +M  + +  N Y++N +I  +C    L  +     ++   G
Sbjct: 112 VIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLG 171

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAY----------HLFEEMAQKGIFRDVITYNTLIQGY 419
           +    VT+NTL+ GLCL  R  EA            LF++M + G+   VIT+NTLI G 
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGL 231

Query: 420 CKEGKIV 426
           C EG+++
Sbjct: 232 CLEGRVL 238



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 79/195 (40%), Gaps = 30/195 (15%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP---NPNSLELYIQCL 148
            FQ + SH G  PD ++CN+L     E    + A++  +    S    +  +  + I  +
Sbjct: 484 LFQEMISH-GVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGM 542

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C+   ++EA+  F  L   GV   ++T+N                           +I  
Sbjct: 543 CKGSKVDEAWDLFCSLPIHGVEPDVQTYN--------------------------VMISG 576

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +S+   L  ++ ++G  P+N+ +N LI    +     +  EL+  M +   + D
Sbjct: 577 FCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 636

Query: 269 NFTYEEVINGLCKSR 283
            FT + V + +   R
Sbjct: 637 AFTIKMVADLITDGR 651


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+  +L ++  +   +K AM  LD     G +P+  +  + +  +C+ G +++A   
Sbjct: 191 PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 250

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              L   G   +  ++N  L G    +R +   +L  ++ + G          LI   C 
Sbjct: 251 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 310

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G V    E+L Q+ + G  P + ++N L+  FC++K   +    L  MV+R   PD  +
Sbjct: 311 KGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 370

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LC+S +   A  + + LK++G  P  + Y TVI GL K G   +A ++  EM+
Sbjct: 371 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 430

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY+++  G CR D +E+A R   ++ D G    TV YN +I GLC    T 
Sbjct: 431 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 490

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  LF  M   G   +  TY  LI+G   EG I
Sbjct: 491 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 524



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 145/329 (44%), Gaps = 30/329 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  +I F + L S YG  P+ VS N++   L  A  ++ A   M  +   G  PN 
Sbjct: 240 QEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 298

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  LC  GL+E A     ++ + G   +  ++N                     
Sbjct: 299 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNP-------------------- 338

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+ AFC   K+ +    L  ++  G  P+  ++N L++  C         ELLH
Sbjct: 339 ------LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 392

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +  AP   +Y  VI+GL K+ K  EA  + N++  +G  PD + Y+T+  GLC+  
Sbjct: 393 QLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 452

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + DA + + ++   G+ PN   YN++I G C+      A  L   M+  G      TY 
Sbjct: 453 RIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 512

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            LI GL   G   EA  L +E+  +G+ R
Sbjct: 513 ILIEGLAYEGLIKEARDLLDELCSRGVVR 541



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+  C  G+ +    +L ++L    VP+   +  L+   C++  + +  +LL  M  + 
Sbjct: 164 LIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 223

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  V+NG+C+  +  +A     +L   G  P+TV Y  V+ GLC      DA 
Sbjct: 224 CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 283

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM  KG  PN  T+N +I   CR   +E A  + +++   G    +++YN L+   
Sbjct: 284 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAF 343

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   + D+A    + M  +G + D+++YNTL+   C+ G++
Sbjct: 344 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 384



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 114/228 (50%), Gaps = 3/228 (1%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    ++  +C  G++     L   V E  + P+   +N LI   C +        +L
Sbjct: 125 DVMAYNAMVAGYCGAGQLDAARRL---VAEMPVEPDAYTYNTLIRGLCGRGRTANALAVL 181

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ R   PD  TY  ++   CK     +A ++ ++++++G  PD V Y  V++G+C+ 
Sbjct: 182 DEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQE 241

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + DA +    +   G  PN  +YN ++ G C  +  E+A+ L  EM  KG     VT+
Sbjct: 242 GRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 301

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           N LI+ LC  G  + A  + E++ + G   + ++YN L+  +CK+ K+
Sbjct: 302 NMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKM 349



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 12/135 (8%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA R+    +     PD      +I  L   G   +AR++          P+   YN+M+
Sbjct: 83  EALRLVGSARR----PDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMV 133

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GYC    L+ A+RL  EM  +       TYNTLI GLC  GRT  A  + +EM ++   
Sbjct: 134 AGYCGAGQLDAARRLVAEMPVE---PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCV 190

Query: 407 RDVITYNTLIQGYCK 421
            DV+TY  L++  CK
Sbjct: 191 PDVVTYTILLEATCK 205



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +  L + G L +A      ++     P+  T  ++I          EA+R+         
Sbjct: 72  LRSLVRRGELDEA----LRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----AC 122

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G   + YN ++AG C  G+ D A  L  EM    +  D  TYNTLI+G C  G+  N
Sbjct: 123 GPDVMAYNAMVAGYCGAGQLDAARRLVAEMP---VEPDAYTYNTLIRGLCGRGRTAN 176


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 160/327 (48%), Gaps = 29/327 (8%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
            SP++V+ N +  +L +A+    AM+ L +   +G  P+  +    +   C SG  +EA 
Sbjct: 119 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 178

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               K++  GV   + T+NS                          L+   C +G+ +E 
Sbjct: 179 VFLKKMRSDGVEPDVVTYNS--------------------------LMDYLCKNGRCTEA 212

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++   + + GL PE T +  L+  +  K     +  LL  MV     P+++ +  ++  
Sbjct: 213 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 272

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             K  K  EA  VF+ ++++G  P+ V Y  VI  LCK G + DA   + +MI +GL P 
Sbjct: 273 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 332

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YNS+IHG C  +  E A+ L  EMLD+G    T+ +N++I   C  GR  E+  LF+
Sbjct: 333 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFD 392

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            M + G+  D+ITY+TLI GYC  GK+
Sbjct: 393 LMVRIGVKPDIITYSTLIDGYCLAGKM 419



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/327 (25%), Positives = 150/327 (45%), Gaps = 35/327 (10%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P++ +   L        +LVE       +D +   G  PN     + +    +   +
Sbjct: 223 GLKPEITTYGTLLQGYATKGALVEMHGL---LDLMVRNGIHPNHYVFSILVCAYAKQEKV 279

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           EEA   FSK+++ G+  +  T+                          G +I   C  G+
Sbjct: 280 EEAMLVFSKMRQQGLNPNAVTY--------------------------GAVIGILCKSGR 313

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V +      Q++++GL P N  +N LI   C    + R  EL+  M+ R    +   +  
Sbjct: 314 VEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNS 373

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+  CK  + +E+ ++F+ +   G  PD + Y+T+I G C  G + +A K+   M+  G
Sbjct: 374 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVG 433

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P+  TY+++I+GYC+I  +++A  L +EM   G     +TYN ++ GL    RT  A 
Sbjct: 434 MKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAK 493

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+  + + G   ++ TYN ++ G CK
Sbjct: 494 ELYVGITKSGRQLELSTYNIILHGLCK 520



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/337 (22%), Positives = 161/337 (47%), Gaps = 14/337 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           PD+ S N+L + L +    + A++ L     D     P+  S    I    + G +++ +
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKTY 108

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAF 209
             ++++ +  +  ++ T+NS +    K    D   ++   +++SG +         +  F
Sbjct: 109 STYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 168

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R   P+ 
Sbjct: 169 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPEI 228

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  ++ G       +E + + + +   G  P+  +++ ++    K   + +A  ++ +
Sbjct: 229 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 288

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +GL PN  TY ++I   C+   +E+A    ++M+D+G     + YN+LI GLC   +
Sbjct: 289 MRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNK 348

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            + A  L  EM  +GI  + I +N++I  +CKEG+++
Sbjct: 349 WERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVI 385



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 69/209 (33%), Positives = 114/209 (54%), Gaps = 7/209 (3%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVIN 277
           ELLR+      +P+  ++N L++  C++       ELLH M     +  PD  +Y  VIN
Sbjct: 42  ELLRRG-----IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN 96

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K     + Y  +N++ ++   P+ V Y ++I  LCK   +  A ++   M+  G++P
Sbjct: 97  GFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMP 156

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYNS++HG+C     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F
Sbjct: 157 DCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIF 216

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + M ++G+  ++ TY TL+QGY  +G +V
Sbjct: 217 DSMTKRGLKPEITTYGTLLQGYATKGALV 245



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 137/337 (40%), Gaps = 44/337 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +PN  +    I  LC+SG +E+A   F ++ + G+      +NS + G    ++ +  
Sbjct: 293 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 352

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P+   ++ LI  
Sbjct: 353 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDG 412

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C        ++LL +MV+    PD  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 413 YCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSGVSPD 472

Query: 304 TVMYTTVI-----------------------------------HGLCKMGWLGDARKMWF 328
            + Y  ++                                   HGLCK     DA +M+ 
Sbjct: 473 IITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDALRMFQ 532

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +    L     T+N MI    ++   +EAK L       G      TY  +   +   G
Sbjct: 533 NLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQG 592

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +E   LF  M   G   D    N +++   + G+I
Sbjct: 593 LLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 629



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 38/140 (27%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL-------------------- 361
           DAR ++ E++ +G+ P+ ++YN +++G C  +  +EA  L                    
Sbjct: 35  DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 362 -----------------HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
                            + EMLD+      VTYN++IA LC     D+A  +   M + G
Sbjct: 94  VINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSG 153

Query: 405 IFRDVITYNTLIQGYCKEGK 424
           +  D +TYN+++ G+C  G+
Sbjct: 154 VMPDCMTYNSIVHGFCSSGQ 173


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 102/340 (30%), Positives = 164/340 (48%), Gaps = 21/340 (6%)

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGL 153
           H+HY +S       +L +         +A+  L      G+ P+  +L   +   C    
Sbjct: 114 HNHYTYS-------ILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 166

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           I EA     ++ EMG      T+N+ + G    ++      L           DL   G 
Sbjct: 167 ISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 226

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA-FNKLISRFCEKKNFGRVSELLHTMVAR 263
           ++   C  G +     LL++ +E G +  N   +N +I   C+ K+     +L + M  +
Sbjct: 227 VVNGLCKRGDIDLALSLLKK-MEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETK 285

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD FTY  +I+ LC   +  +A R+ +D+ ER   P+ V + ++I    K G L +A
Sbjct: 286 GIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEA 345

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K++ EMI + + PN  TYNS+I+G+C  D L+EA+++   M+ K      VTYNTLI G
Sbjct: 346 EKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKG 405

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            C   R +E   LF EM+Q+G+  + +TYNTLIQG  + G
Sbjct: 406 FCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 445



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+V+ + L +     +    A+  +D     G+ P+  +    I  L       EA
Sbjct: 146 GYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEA 205

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGY-----LIQA 208
                ++   G    + T+ + + G  K    DL   L   +    IE+       +I  
Sbjct: 206 VALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDG 265

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    + + ++L  ++   G+ P+   +N LIS  C    +   S LL  M+ R   P+
Sbjct: 266 LCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPN 325

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K +EA ++F+++ +R   P+ V Y ++I+G C    L +A++++ 
Sbjct: 326 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 385

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K  LP+  TYN++I G+C+   +EE   L +EM  +G    TVTYNTLI GL   G
Sbjct: 386 LMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAG 445

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F++M   G+  D+ITY+ L+ G CK GK+
Sbjct: 446 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKL 482



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 169/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ N L   L    +A      +D + + G  P+  +    +  LC+ G I+ A
Sbjct: 181 GYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLA 240

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+++  +  ++  +N+ + G  K    D  + L++ +   G          LI  
Sbjct: 241 LSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISC 300

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  ++E  + P    FN LI  F ++       +L   M+ R+  P+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPN 360

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C   +  EA ++F  +  +  +PD V Y T+I G CK   + +  +++ 
Sbjct: 361 IVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFR 420

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TYN++I G  +  + + A+++ K+M+  G     +TY+ L+ GLC +G
Sbjct: 421 EMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYG 480

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +FE + +  +  ++ TYN +I+G CK GK+
Sbjct: 481 KLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKV 517



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 175/337 (51%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  PDL +   + + L +     +A+  L          ++ +Y   I  LC+   +++A
Sbjct: 216 GCQPDLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDA 275

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
           F  F+K++  G+   + T+NS L+ C+    R     +L  D+IE            LI 
Sbjct: 276 FDLFNKMETKGIKPDVFTYNS-LISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLID 334

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK+ E  +L  ++++  + P    +N LI+ FC         ++   MV+++  P
Sbjct: 335 AFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 394

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I G CK+++  E   +F ++ +RG V +TV Y T+I GL + G    A+K++
Sbjct: 395 DVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIF 454

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTLIAGLCL 386
            +M+  G+ P+  TY+ ++ G C+   LE+A  +  E L K   E  + TYN +I G+C 
Sbjct: 455 KKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVF-EYLQKSKMEPNIYTYNIMIEGMCK 513

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G+ ++ + LF  ++ KG+  +VI Y T+I G+C++G
Sbjct: 514 AGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 550



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 150/329 (45%), Gaps = 14/329 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+ + N L   L      + A ++  D ++    +PN  +    I    + G + E
Sbjct: 286 GIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERK-INPNVVTFNSLIDAFAKEGKLIE 344

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   F ++ +  +  +I T+NS + G    DR D   +++          D++    LI+
Sbjct: 345 AEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIK 404

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   +V EG EL R++ + GLV     +N LI    +  +     ++   MV+    P
Sbjct: 405 GFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPP 464

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++GLCK  K  +A  VF  L++    P+   Y  +I G+CK G + D   ++
Sbjct: 465 DIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ PN   Y +MI G+CR    EEA  L +EM + G    +  YNTLI      
Sbjct: 525 CSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRD 584

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           G    +  L +EM   G   D  T + +I
Sbjct: 585 GDKAASAELIKEMRSCGFVGDASTISMVI 613



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 140/282 (49%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           +++A   F ++ +   F SI  ++  L    K+++ D+V  L   +   G          
Sbjct: 62  LDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGIPHNHYTYSI 121

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  FC   ++     +L ++++ G  P+    + L++ +C  K       L+  MV   
Sbjct: 122 LLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMG 181

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +I+GL    K  EA  + + +  RG  PD   Y TV++GLCK G +  A 
Sbjct: 182 YKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 241

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  N   YN++I G C+  ++++A  L  +M  KG      TYN+LI+ L
Sbjct: 242 SLLKKMEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCL 301

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L  +M ++ I  +V+T+N+LI  + KEGK++
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLI 343



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 112/270 (41%), Gaps = 36/270 (13%)

Query: 104 PDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           P++V+ N L       D L EA+     M   D     P+  +    I+  C++  +EE 
Sbjct: 359 PNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCL---PDVVTYNTLIKGFCKAKRVEEG 415

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+ G+  T+N+ + G  +    D+  K++  ++  G          L+  
Sbjct: 416 MELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDG 475

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK+ +   +   + +  + P    +N +I   C+        +L  ++  +   P+
Sbjct: 476 LCKYGKLEKALVVFEYLQKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPN 535

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK------------ 316
              Y  +I+G C+   + EA  +F ++KE G +PD+  Y T+I    +            
Sbjct: 536 VIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIK 595

Query: 317 ----MGWLGDAR--KMWFEMIHKGLLPNEY 340
                G++GDA    M   M+H G L   Y
Sbjct: 596 EMRSCGFVGDASTISMVINMLHDGRLEKSY 625


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/277 (33%), Positives = 141/277 (50%), Gaps = 26/277 (9%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I+  C+    +EAF  F  +KE GV  +I+T NS L   +K++RT+  W LY        
Sbjct: 158 IKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLY-------- 209

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
                          E+ R  ++  +      FN +I+  C++    +  + +  M    
Sbjct: 210 --------------AEMFRLRIKSSVY----TFNIMINVLCKEGKLKKAKDFVGHMETSG 251

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +++G C S +   A  +   +K +   PD+  Y ++I G+CK G L +A 
Sbjct: 252 VKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEAS 311

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++ EM+ KGL P+   YN++I G+C   NL+ A     EML KG   T  TYN+LI  L
Sbjct: 312 KIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHAL 371

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +  RTDEA  + +E+ +KGI  D ITYN LI GYC+
Sbjct: 372 FMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCR 408



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 163/328 (49%), Gaps = 12/328 (3%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N++ + L +    K A DF   ++++G  PN  +    +   C SG +E A    + +K 
Sbjct: 225 NIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKR 284

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
             +     T+ S + G  K  R +   K++ ++++ G          LI  FCN G +  
Sbjct: 285 QKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNLDM 344

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                 ++L+ G+ P  + +N LI     ++       ++  +  +  +PD  TY  +IN
Sbjct: 345 ASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILIN 404

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C+     +A+ + +++   G  P    YT+++H L K   + +A  ++ ++  +G+LP
Sbjct: 405 GYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLP 464

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +   +N++I G+C   N++ A  L K+M         VT+NT++ G C  G+ +EA  LF
Sbjct: 465 DVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELF 524

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EM ++GI  D I++NTLI GY + G I
Sbjct: 525 DEMKRRGIKPDHISFNTLISGYSRRGDI 552



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 135/304 (44%), Gaps = 12/304 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V  N L D         +A  + D     G SP  ++    I  L      +EA
Sbjct: 321 GLRPSAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEA 380

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
            C   +++E G+     T+N  + G  +       + L+ +++ SG          L+  
Sbjct: 381 ECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHV 440

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                ++ E  +L +++  +G++P+   FN LI   C   N     ELL  M      PD
Sbjct: 441 LSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPD 500

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++ G C+  K  EA  +F+++K RG  PD + + T+I G  + G + DA ++  
Sbjct: 501 EVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRN 560

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G  P   TYN+++ G C+    + A+ L KEM+ KG      TY TLI G+    
Sbjct: 561 EMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLKEMVSKGMTPDDTTYFTLIEGIAKVN 620

Query: 389 RTDE 392
             DE
Sbjct: 621 IPDE 624



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 102/222 (45%), Gaps = 35/222 (15%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           YLI++ C+  +  E +E    + E G++P     N L+S F  K N    + +L+  + R
Sbjct: 156 YLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFL-KLNRTEAAWVLYAEMFR 214

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
            R                             +K   Y      +  +I+ LCK G L  A
Sbjct: 215 LR-----------------------------IKSSVYT-----FNIMINVLCKEGKLKKA 240

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +     M   G+ PN  TYN+++HGYC    +E A  +   M  +     + TY +LI+G
Sbjct: 241 KDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISG 300

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +C  GR +EA  +FEEM QKG+    + YNTLI G+C +G +
Sbjct: 301 MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLIDGFCNKGNL 342



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 126/271 (46%), Gaps = 12/271 (4%)

Query: 101 GFSPDLVSCNVLFDSL-VEARA--FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP + + N L  +L +E R    +  +  +   G SP+  +  + I   C     ++A
Sbjct: 356 GISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKA 415

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH-----DLIESGYLIQA 208
           F    ++   G+  + KT+ S L    K +R     DL  K+       D+I    LI  
Sbjct: 416 FLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDG 475

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C++  V   +ELL+ +    + P+   FN ++   C +       EL   M  R   PD
Sbjct: 476 HCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPD 535

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + ++  +I+G  +     +A+RV N++ + G+ P  + Y  ++ GLCK      A ++  
Sbjct: 536 HISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEELLK 595

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           EM+ KG+ P++ TY ++I G  +++  +E K
Sbjct: 596 EMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 77/157 (49%)

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  ++ +I   C   +  EA+  F  +KE+G +P      +++    K+     A  ++ 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    +  + YT+N MI+  C+   L++AK     M   G     VTYNT++ G C  G
Sbjct: 211 EMFRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSG 270

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R + A  +   M ++ I  D  TY +LI G CK+G++
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRL 307


>gi|218188645|gb|EEC71072.1| hypothetical protein OsI_02831 [Oryza sativa Indica Group]
          Length = 800

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/334 (29%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD  + N+L   L + R  + A++    ++ TG  P   +    + C C +G ++EA   
Sbjct: 384 PDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCVNGCMDEAVKL 443

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           ++++   G   ++ T+ + + G I     D  + L  ++ ++G          LI   C 
Sbjct: 444 YTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCV 503

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V E  E+L++   +G VP    +N +I+ F +    G    +   M A+   P+  T
Sbjct: 504 VGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVT 563

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   I+G CK+     A ++ ND++ +G  PD   Y ++I+G C+ G +  A ++   M+
Sbjct: 564 YTSFIDGYCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLML 623

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GLLPN   YNS I GY  +  +EEA R +++M+ +G    T TY TLI G    G   
Sbjct: 624 KDGLLPNISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVT 683

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  L+ EM  KG   D IT+  L  G C+ G I
Sbjct: 684 FALKLYSEMVAKGNIPDHITFTALTHGLCRNGDI 717



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 146/328 (44%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++V+   L    +   AF  A   L      G S N  +    I  LC  G + E 
Sbjct: 451 GFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYTYNTLINGLCVVGRVCEV 510

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                + +  G   +  T+NS + G IK       + +Y  +   G           I  
Sbjct: 511 GEMLKRFETEGFVPTAMTYNSIINGFIKAGMMGSAFAVYQQMCAKGIPPNIVTYTSFIDG 570

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C         ++L  V   GL P+  A+N LI  FC++ N     ++L  M+     P+
Sbjct: 571 YCKTSCCDLALKMLNDVRCKGLRPDIAAYNSLIYGFCQEGNMSHALQVLVLMLKDGLLPN 630

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y   I G    +   EA R +  + + G   DT  YTT+I G  K G +  A K++ 
Sbjct: 631 ISVYNSFITGYKNLKMMEEALRFYEKMIKEGIDLDTATYTTLIDGFSKDGNVTFALKLYS 690

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG +P+  T+ ++ HG CR  ++++A++L  EM         + YN LI G   +G
Sbjct: 691 EMVAKGNIPDHITFTALTHGLCRNGDIDDARKLLDEMNRLDIRPNVLMYNMLINGYLRNG 750

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +  EA+ L +EM ++ I  D  TY+ L+
Sbjct: 751 KLQEAFRLHDEMLERKIMPDDTTYDILV 778



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 152/347 (43%), Gaps = 14/347 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           ++R F  + +     PD   C+V   SL + R    A+  L      GF P   +    +
Sbjct: 196 AVRLFDEMPASE-IEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVV 254

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
             L + G +EEA     +L   G   S+    + + G            ++ + +  G  
Sbjct: 255 DVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLV 314

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI+    +G   + YEL RQ+ + GL+P    FN +I      K +     L
Sbjct: 315 PTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNMVIKGLLNDKLWKDAVSL 374

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M A +  PD FTY  +I+ LC+ RK  EA  ++  + E G  P  V Y +++   C 
Sbjct: 375 FKEM-ADSGIPDAFTYNILIHWLCQRRKIREALNLWEKMNETGVKPYIVTYHSLLLCYCV 433

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +A K++ EM  KG  PN  TY +++ G+      ++A  L  EM   G      T
Sbjct: 434 NGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAYALLAEMKQNGVSCNDYT 493

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           YNTLI GLC+ GR  E   + +    +G     +TYN++I G+ K G
Sbjct: 494 YNTLINGLCVVGRVCEVGEMLKRFETEGFVPTAMTYNSIINGFIKAG 540



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 151/331 (45%), Gaps = 19/331 (5%)

Query: 112 LFDSLVEARAFKVAM--------DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +FD ++ A  FK  M        D + ++   P+     + I  LC+      A     K
Sbjct: 179 MFDVVMRA-CFKEGMYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRK 237

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
           +++ G      T+NS +   +K  R +    +  +L+ +G          L+  +C   +
Sbjct: 238 MQDAGFVPWDFTFNSVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQRE 297

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V +  ++  + L DGLVP +  +  LI    E+    +  EL   M      P    +  
Sbjct: 298 VRKALDIFEETLRDGLVPTDVTYTVLIRGCTEEGMPEKAYELCRQMRDHGLLPSTNEFNM 357

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VI GL   +   +A  +F ++ + G +PD   Y  +IH LC+   + +A  +W +M   G
Sbjct: 358 VIKGLLNDKLWKDAVSLFKEMADSG-IPDAFTYNILIHWLCQRRKIREALNLWEKMNETG 416

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P   TY+S++  YC    ++EA +L+ EM  KG+    VTY TL+ G       D+AY
Sbjct: 417 VKPYIVTYHSLLLCYCVNGCMDEAVKLYTEMPGKGFTPNVVTYTTLMKGHINKAAFDKAY 476

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L  EM Q G+  +  TYNTLI G C  G++
Sbjct: 477 ALLAEMKQNGVSCNDYTYNTLINGLCVVGRV 507



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 89/195 (45%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+ P+  +   L++      +      LL  M  +    D + ++ V+    K     +A
Sbjct: 137 GVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEGMYDDA 196

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            R+F+++      PD  + +  I  LCK+     A  +  +M   G +P ++T+NS++  
Sbjct: 197 VRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFNSVVDV 256

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
             +   +EEA  +  E+L  G   + V   TL+ G CL     +A  +FEE  + G+   
Sbjct: 257 LVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREVRKALDIFEETLRDGLVPT 316

Query: 409 VITYNTLIQGYCKEG 423
            +TY  LI+G  +EG
Sbjct: 317 DVTYTVLIRGCTEEG 331



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 82/167 (49%)

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           +M AR   PD  +  +++    +S    +A  +  +++ +G+  D  M+  V+    K G
Sbjct: 132 SMEARGVTPDAKSRTDLLAVTARSASAADALALLAEMRGKGHPLDAWMFDVVMRACFKEG 191

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              DA +++ EM    + P++   +  I   C++ +   A  + ++M D G+     T+N
Sbjct: 192 MYDDAVRLFDEMPASEIEPDQRVCSVAIASLCKLRDANRALLVLRKMQDAGFVPWDFTFN 251

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +++  L   GR +EA H+ +E+   G    V+   TL+ GYC + ++
Sbjct: 252 SVVDVLVKGGRMEEALHIKDELLATGKKMSVVLATTLMHGYCLQREV 298


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 170/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N + + +  +    +A D L   +      +  +    I  LC  G I+ A
Sbjct: 188 GCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAA 247

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR--------TDLVWK-LYHDLIESGYLIQA 208
              F +++  G+  S+ T+NS + G  K  +         D+V + +  ++I    L+  
Sbjct: 248 ISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDV 307

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ E  EL ++++  G+ P    +N L+  +C +      + +L  MV    +PD
Sbjct: 308 FVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPD 367

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I G C  ++  +  +VF ++ +RG V + V Y+ ++ G C+ G +  A +++ 
Sbjct: 368 IVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQ 427

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G+LP+  TY  ++ G C    LE+A  + +++         V Y T+I G+C  G
Sbjct: 428 EMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGG 487

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A++LF  +  KG+  +V+TY  +I G CK+G +
Sbjct: 488 KVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSL 524



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 85/320 (26%), Positives = 154/320 (48%), Gaps = 29/320 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P LV  +  F ++   + F + +DF   L+  G + N  +L + I C C       A+  
Sbjct: 86  PGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSV 145

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ ++G      T+N+                          LI   C +GKVS+   
Sbjct: 146 LGKVMKLGYEPDTTTFNT--------------------------LINGLCLEGKVSKAVV 179

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ +++E+G  P+   +N +++  C   +     ++L  M  RN   D FTY  +I+ LC
Sbjct: 180 LVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLC 239

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           +      A  +F +++ +G     V Y +++ GLCK G   D   +  +M+ + ++PN  
Sbjct: 240 RDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVI 299

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T+N ++  + +   L+EA  L+KEM+ +G     +TYNTL+ G C+  R  EA ++ + M
Sbjct: 300 TFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLM 359

Query: 401 AQKGIFRDVITYNTLIQGYC 420
            +     D++T+ +LI+GYC
Sbjct: 360 VRNKCSPDIVTFTSLIKGYC 379



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 120/231 (51%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           + H++     +I  FC   K    Y +L +V++ G  P+ T FN LI+  C +    +  
Sbjct: 119 IAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAV 178

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            L+  MV     PD  TY  ++NG+C+S     A+ +   ++ER    D   Y+T+I  L
Sbjct: 179 VLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSL 238

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C+ G +  A  ++ EM  KG+  +  TYNS++ G C+     +   L K+M+ +      
Sbjct: 239 CRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNV 298

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +T+N L+      G+  EA  L++EM  +GI  ++ITYNTL+ GYC + ++
Sbjct: 299 ITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 349



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 157/341 (46%), Gaps = 13/341 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +I  F+ + +  G    +V+ N L   L +A  +      L    S    PN  +  + +
Sbjct: 247 AISLFKEMETK-GIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLL 305

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-------DLVW--KLY 196
               + G ++EA   + ++   G+  +I T+N+ + G    +R        DL+   K  
Sbjct: 306 DVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCS 365

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    LI+ +C   +V +G ++ R + + GLV     ++ L+  FC+        EL
Sbjct: 366 PDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEEL 425

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              MV+    PD  TY  +++GLC + K  +A  +F DL++       VMYTT+I G+CK
Sbjct: 426 FQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCK 485

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + DA  ++  +  KG+ PN  TY  MI G C+  +L EA  L ++M + G      T
Sbjct: 486 GGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCT 545

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           YNTLI      G    +  L EEM   G   D  +   +I 
Sbjct: 546 YNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVID 586



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 107/213 (50%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K  +   L ++++    +P    F++  S     K F  V +    +     A + +T
Sbjct: 66  DIKKDDAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYT 125

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +IN  C+  K   AY V   + + GY PDT  + T+I+GLC  G +  A  +   M+
Sbjct: 126 LNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMV 185

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  TYNS+++G CR  +   A  + ++M ++       TY+T+I  LC  G  D
Sbjct: 186 ENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERNVKADVFTYSTIIDSLCRDGCID 245

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            A  LF+EM  KGI   V+TYN+L++G CK GK
Sbjct: 246 AAISLFKEMETKGIKSSVVTYNSLVRGLCKAGK 278



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 30/201 (14%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
           Q   + L+   FQ + SH G  PD+++  +L D L +    + A++  +    S     +
Sbjct: 415 QSGKIKLAEELFQEMVSH-GVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGI 473

Query: 142 ELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +Y   I+ +C+ G +E+A+  F  L   GV  ++ T+                      
Sbjct: 474 VMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYT--------------------- 512

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I   C  G +SE   LLR++ EDG  P +  +N LI       +    ++L+ 
Sbjct: 513 -----VMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIE 567

Query: 259 TMVARNRAPDNFTYEEVINGL 279
            M +   + D  + + VI+ L
Sbjct: 568 EMKSCGFSADASSIKMVIDML 588



 Score = 45.1 bits (105), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 43/104 (41%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  ++ EMI    LP    ++       R           K++   G      T N +I
Sbjct: 71  DAIALFQEMIRSRPLPGLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMI 130

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C   +T  AY +  ++ + G   D  T+NTLI G C EGK+
Sbjct: 131 NCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKV 174


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 158/332 (47%), Gaps = 44/332 (13%)

Query: 138  PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
            P+  +L I+   + G+I+ A   F  +  +G   S+ T N  L   +K  RT+LVW L+ 
Sbjct: 914  PSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFR 973

Query: 198  DLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            ++ + G          LI   C +G + +   LL+Q+ E+G VP    +N L++ +C+K 
Sbjct: 974  EMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKG 1033

Query: 249  NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
             +    EL+  M+ +    D  TY   I+ LC + +  +AY +   +++    P+ V Y 
Sbjct: 1034 RYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYN 1093

Query: 309  TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            T+I+G  K G +G A +++ EM    L PN  TYN++I G+C + + EEA RL   M   
Sbjct: 1094 TLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 1153

Query: 369  GYGETTVTYNTLIAGLCLH-----------------------------------GRTDEA 393
            G     VTY TL+ GLC H                                   G  DEA
Sbjct: 1154 GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEA 1213

Query: 394  YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              L   M + G+  DVITY++LI G+C+ G I
Sbjct: 1214 VQLVGNMYKDGVNPDVITYSSLINGFCRVGNI 1245



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 166/339 (48%), Gaps = 12/339 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
            GF P +V+ N L +   +   +K A++ +D     G   +  +  ++I  LC +    +A
Sbjct: 1014 GFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKA 1073

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
            +    K+++  +  +  T+N+ + G +K  +  +  ++++++         +    LI  
Sbjct: 1074 YLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGG 1133

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             C+ G   E   LL  +   GL      +  L++  C+ + F     LL  M   +    
Sbjct: 1134 HCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVG 1193

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +  Y  +I+GLCK+    EA ++  ++ + G  PD + Y+++I+G C++G +  A+++  
Sbjct: 1194 HIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIIC 1253

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M   GL+ N+  Y+++I+ +C+  N+ EA +++  M   G+G    T N L++ LC  G
Sbjct: 1254 RMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDG 1313

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +  EA      M++ G+  + ITY+ +I GY   G  +N
Sbjct: 1314 KLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLN 1352



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 12/338 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
            G  PD V+ N + DS         A DF  +    G  PN  +  + +    +   +   
Sbjct: 1505 GTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRY 1564

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +S +   G+F    T++S +LG  K    DL  KL   +I  G          LI  
Sbjct: 1565 LSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINK 1624

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            +   GK+ + ++L+  +   G+ P+   +N + +   +K  F   + +LH M+     P 
Sbjct: 1625 YSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPK 1684

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +  Y  +ING+C+      A+++ ++++  G+    V  + ++ GL   G   DA  +  
Sbjct: 1685 HAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLD 1744

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M+   LLP   T+ +++H +CR   + EA +L   M   G     V YN LI G+C +G
Sbjct: 1745 HMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANG 1804

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +  A+ L+EEM  + +  ++ TY  L+        ++
Sbjct: 1805 DSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLI 1842



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 153/372 (41%), Gaps = 47/372 (12%)

Query: 102  FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAF 158
             SP+ V+ N L +  V+     VA    +       SPN  +    I   C  G  EEA 
Sbjct: 1085 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 1144

Query: 159  CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
                 ++  G+  +  T+ + L G  K ++ +L  +L   +         I    LI   
Sbjct: 1145 RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGL 1204

Query: 210  CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            C +G + E  +L+  + +DG+ P+   ++ LI+ FC   N     E++  M       + 
Sbjct: 1205 CKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNK 1264

Query: 270  FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
              Y  +I   C+     EA +V+  +   G+  D      ++  LC+ G LG+A K    
Sbjct: 1265 IIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCH 1324

Query: 330  MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC---- 385
            M   GL+PN  TY+ +I+GY  I +   A     +M+  G   +  TY +L+ GLC    
Sbjct: 1325 MSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGN 1384

Query: 386  ----------LH---------------------GRTDEAYHLFEEMAQKGIFRDVITYNT 414
                      LH                     G   EA  LF++M Q  +  D  TY++
Sbjct: 1385 LVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSS 1444

Query: 415  LIQGYCKEGKIV 426
            L+ G C++GK V
Sbjct: 1445 LLTGLCRKGKAV 1456



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 7/226 (3%)

Query: 205  LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            L+ + C DGK+ E  + L  +   GLVP +  ++ +I+ +    +          M+   
Sbjct: 1305 LVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCG 1364

Query: 265  RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLG 321
            + P  FTY  ++ GLCK    +EA +  N L    Y+P   D+VMY T++   CK G L 
Sbjct: 1365 QHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLH---YIPGAVDSVMYNTLLAETCKSGNLH 1421

Query: 322  DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTL 380
            +A  ++ +M+   +LP+ YTY+S++ G CR      A  L    + +G      V Y  L
Sbjct: 1422 EAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 1481

Query: 381  IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            + GL   G    A++ FEEM +KG   D + +N +I    + G+++
Sbjct: 1482 VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 1527



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 142/332 (42%), Gaps = 12/332 (3%)

Query: 104  PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
            P+ V    L D L +A   K A  F +     G  P+  +    I      G + +A   
Sbjct: 1473 PNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDF 1532

Query: 161  FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            FS ++  GV  ++ T+N  L G  K         LY  ++  G          LI     
Sbjct: 1533 FSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSK 1592

Query: 212  DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             G    G +LL +++ +G + +   FN LI+++ E     +  +L++ M      PD  T
Sbjct: 1593 SGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDT 1652

Query: 272  YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
            Y  + NGL K     E+  V +++ E G +P    Y T+I+G+C++G +  A K+  EM 
Sbjct: 1653 YNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEME 1712

Query: 332  HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              G   +E   ++M+ G       E+A  +   ML      T  T+ TL+   C   +  
Sbjct: 1713 ALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIA 1772

Query: 392  EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            EA  L   M   G+  DV+ YN LI G C  G
Sbjct: 1773 EALKLKGVMELCGLKLDVVAYNVLIMGMCANG 1804



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 146/339 (43%), Gaps = 14/339 (4%)

Query: 101  GFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
            G   D+ + NV  D+L      A+A+ + +  +     SPN  +    I    + G I  
Sbjct: 1049 GIEADVCTYNVFIDNLCTNHRSAKAY-LLLKKMRKEMISPNEVTYNTLINGFVKEGKIGV 1107

Query: 157  AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQ 207
            A   F+++ +  +  +  T+N+ + G   +   +   +L   +         +  G L+ 
Sbjct: 1108 AAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLN 1167

Query: 208  AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
              C   K      LL ++  + +V  + A+  LI   C+        +L+  M      P
Sbjct: 1168 GLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNP 1227

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            D  TY  +ING C+      A  +   +   G V + ++Y+T+I+  C+ G + +A K++
Sbjct: 1228 DVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVY 1287

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              M   G   + +T N ++   CR   L EA++    M   G    ++TY+ +I G    
Sbjct: 1288 AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 1347

Query: 388  GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            G    A+  F++M + G      TY +L++G CK G +V
Sbjct: 1348 GDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLV 1386



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 135/338 (39%), Gaps = 13/338 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCL---CESGLIEEA 157
            G  P   +   L   L +      A  FL+   + P      +Y   L   C+SG + EA
Sbjct: 1364 GQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEA 1423

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
               F K+ +  V     T++S L G  +  +      L+   +  G L          + 
Sbjct: 1424 VALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVD 1483

Query: 208  AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                 G     +    ++++ G  P+  AFN +I     +    + ++   TM      P
Sbjct: 1484 GLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCP 1543

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            +  TY  +++G  K +  L    +++ +   G  PD + + ++I GL K G      K+ 
Sbjct: 1544 NLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLL 1603

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +MI +G L +++T+N +I+ Y     + +A  L   M   G      TYN +  GL   
Sbjct: 1604 GKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKK 1663

Query: 388  GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                E+  +  EM + G+      Y TLI G C+ G I
Sbjct: 1664 SAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDI 1701



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 16/215 (7%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  PD  + N +F+ L +  AF+   V +  +   G  P        I  +C  G I+ A
Sbjct: 1645 GVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGA 1704

Query: 158  FCAFSKLKEMGVFGSIKTWNSA----LLGCIKIDRTDLV------WKLYHDLIESGYLIQ 207
            F    +++ +G FGS +   SA    LL C K +   LV       +L   +     L+ 
Sbjct: 1705 FKLKDEMEALG-FGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMH 1763

Query: 208  AFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC D K++E  + L+ V+E  GL  +  A+N LI   C   +     EL   M  R+  
Sbjct: 1764 RFCRDAKIAEALK-LKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLC 1822

Query: 267  PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
            P+  TY  +++ +  +   ++  ++  DL+ERG +
Sbjct: 1823 PNITTYAVLVDAISAANNLIQGEKLLTDLQERGLI 1857


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/360 (30%), Positives = 165/360 (45%), Gaps = 40/360 (11%)

Query: 76  FREFLKQQNNVLLSIRF-------FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF 128
           +RE  K +   L SIRF       F+ +HS     P +V    L  +    R ++  + F
Sbjct: 38  YRE--KLRTGFLHSIRFEDAFALFFEMVHSQP--LPSIVDFTRLLTATANLRRYETVIYF 93

Query: 129 ---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
              ++  G S +  S  + I C C    +  A     K+ ++G   SI T+         
Sbjct: 94  SQKMELYGISHDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTF--------- 144

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
                            G L+  FC   ++ + + L+  +++ G  P    +N LI   C
Sbjct: 145 -----------------GSLLHGFCLVNRIGDAFSLVILMVKSGYEPNVVVYNTLIDGLC 187

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +        ELL+ M  +    D  TY  ++ GLC S +  +A R+  D+ +R   PD V
Sbjct: 188 KNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVV 247

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +T +I    K G L +A++++ EMI   + PN  TYNS+I+G C    L +AK+    M
Sbjct: 248 TFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLM 307

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             KG     VTYNTLI+G C     DE   LF+ M+ +G   D+ TYNTLI GYC+ GK+
Sbjct: 308 ASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKL 367



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 152/336 (45%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P +V+   L            AF + +  + S G+ PN       I  LC++G +  
Sbjct: 136 GYEPSIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNVVVYNTLIDGLCKNGELNI 194

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++++ G+   + T+N+ L G     R     ++  D+++            LI 
Sbjct: 195 ALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALID 254

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F   G + E  EL +++++  + P N  +N +I+  C         +    M ++   P
Sbjct: 255 VFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFP 314

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+G CK R   E  ++F  +   G+  D   Y T+IHG C++G L  A  ++
Sbjct: 315 NVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVALDIF 374

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ + + P+  T+  ++HG C    +E A     +M +       V YN +I GLC  
Sbjct: 375 CWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKA 434

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            + ++A+ LF  +  +G+  D  TY  +I G CK G
Sbjct: 435 DKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNG 470



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 100/247 (40%), Gaps = 12/247 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+V+   L D  V+      A +    +  +   PN  +    I  LC  G + +A 
Sbjct: 242 INPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYDAK 301

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G F ++ T+N+ + G  K    D   KL+  +   G+         LI  +
Sbjct: 302 KTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGY 361

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK+    ++   ++   + P+      L+   C              M    +    
Sbjct: 362 CQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGI 421

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
             Y  +I+GLCK+ K  +A+ +F  L   G  PD   YT +I GLCK G   +A ++   
Sbjct: 422 VAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRR 481

Query: 330 MIHKGLL 336
           M  +G++
Sbjct: 482 MKEEGII 488



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 13/160 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYI 145
            ++ FQ + S  GF+ D+ + N L     +    +VA+D   ++ S   +P+  +  + +
Sbjct: 335 GMKLFQRM-SCEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILL 393

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC +G IE A   F  ++E   +  I  +N  + G  K D+ +  W+L+  L   G  
Sbjct: 394 HGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVK 453

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                   +I   C +G   E  EL+R++ E+G++ +  A
Sbjct: 454 PDARTYTIMILGLCKNGPRREADELIRRMKEEGIICQMNA 493


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/374 (28%), Positives = 172/374 (45%), Gaps = 54/374 (14%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+   L D L + R  K A D  +   + G  P   +    I  LC+ G IE A   
Sbjct: 28  PDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTL 87

Query: 161 FSKLK-EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
           +  +    G   ++ T+++ + G  +    D   KL  ++   G          L+ A  
Sbjct: 88  YDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALL 147

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK----KNFGRVSELLHTMVARNRA 266
             G+  E + LL Q+  +G  PE   F  +I   C++      F  V E+   M+    +
Sbjct: 148 GQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF--MIESGLS 205

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  T+  V++GLCK ++ L+A+ VF    ERG  P+ V Y+T+I GL KM  + +A ++
Sbjct: 206 PDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQL 265

Query: 327 WFEMIH-----------------------------------KGLLPNEYTYNSMIHGYCR 351
             +M+                                     G LP+  TYN++I G+ +
Sbjct: 266 LAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFK 325

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L EA  L +EML+ G+  + VTY TL  GLC  GR DEA  + + MA +G   + IT
Sbjct: 326 RQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAIT 385

Query: 412 YNTLIQGYCKEGKI 425
           Y++++ G CK G++
Sbjct: 386 YSSIVDGLCKAGRV 399



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 160/335 (47%), Gaps = 21/335 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEAR-------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           G SPD+++ N + D L + +        FK A++     G  PN  +    I  L +   
Sbjct: 203 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALE----RGCRPNVVTYSTLIDGLSKMAK 258

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------Y 204
           ++EA    +K+ E+G   +  T+++ + G +K+ R +    +   + ++G          
Sbjct: 259 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 318

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  F    ++ E   LLR++LE G  P    +  L    C    F    E+L  M AR 
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDA 323
            AP+  TY  +++GLCK+ +  EA   F  + ++    P  + Y+ +I GLCK G + +A
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEA 438

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI  G +P+  T++ +I+G C    ++    L + M ++G     VTY TL+  
Sbjct: 439 YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDR 498

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           LC   R DEA+ LF++M   G+  D  T  T+I G
Sbjct: 499 LCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHG 533



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 170/341 (49%), Gaps = 17/341 (4%)

Query: 101 GFSPDLVSCNVLFDSL-----VEARAFKVAMD-FLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P+L++  ++   L     +EA AF+V  + F+  +G SP+  +    +  LC+   I
Sbjct: 166 GCPPELITFGLIIKGLCKEGEIEA-AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRI 224

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            +A   F +  E G   ++ T+++ + G  K+ + D   +L   ++E G          +
Sbjct: 225 LDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTV 284

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +      G++ +   +LRQ+ + G +P+   +N LI  F +++       LL  M+    
Sbjct: 285 VDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF 344

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  + +GLC+S +  EA  + + +  RG  P+ + Y++++ GLCK G + +A  
Sbjct: 345 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALG 404

Query: 326 MWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            + +M    ++ P+   Y+++I G C+   ++EA    + M+  G     VT++ LI GL
Sbjct: 405 YFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGL 464

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR D    LF  MA++G   D++TY TL+   C+  ++
Sbjct: 465 CDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRV 505



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 159/352 (45%), Gaps = 15/352 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++  +  +  H+GF P +V+ + L D L            L+     G +PN  +    +
Sbjct: 84  ALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLV 143

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL--IESG 203
             L   G  +EAF    ++   G    + T+   + G  K    +  +++  ++  IESG
Sbjct: 144 NALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESG 203

Query: 204 Y---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     ++   C + ++ + + + ++ LE G  P    ++ LI    +        
Sbjct: 204 LSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEAL 263

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +LL  MV      +  TY  V++GL K  +  +A  V   +++ G +PD V Y T+I G 
Sbjct: 264 QLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGF 323

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K   L +A  +  EM+  G  P+  TY ++ HG CR    +EA  +   M  +G     
Sbjct: 324 FKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNA 383

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKI 425
           +TY++++ GLC  GR  EA   FE+MA+  +    VI Y+ LI G CK GKI
Sbjct: 384 ITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGKI 435



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/187 (37%), Positives = 107/187 (57%), Gaps = 1/187 (0%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +I   C+ +   +   L   MV +   PD  TY  +I+GL K R+  EAY +F + + +G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEM-IHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
             P  V Y T+I GLCK G + +A  ++ +M IH G  P   TY+++I G CR   +++ 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +L +EM  +G     VTYNTL+  L   GR+ EA+ L E+MA  G   ++IT+  +I+G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 419 YCKEGKI 425
            CKEG+I
Sbjct: 181 LCKEGEI 187



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 91/359 (25%), Positives = 159/359 (44%), Gaps = 27/359 (7%)

Query: 58  EQTLLSDIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL 116
           E  L  D+ +FN   D L   + +   +NV     F + L    G  P++V+ + L D L
Sbjct: 201 ESGLSPDVITFNSVLDGLCKEQRILDAHNV-----FKRALER--GCRPNVVTYSTLIDGL 253

Query: 117 VEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
            +      A+  L      G   N  +    +  L + G +E+A     ++++ G     
Sbjct: 254 SKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDA 313

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
            T+N+ + G  K  R      L  +++E+G+         L    C  G+  E  E+L  
Sbjct: 314 VTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDY 373

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH--TMVARNR--APDNFTYEEVINGLC 280
           +   G  P    ++ ++   C+    GRV+E L     +AR+   AP    Y  +I+GLC
Sbjct: 374 MAARGCAPNAITYSSIVDGLCKA---GRVTEALGYFEKMARDEVVAPHVIAYSALIDGLC 430

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K+ K  EAY     +   G +PD V ++ +I+GLC  G +    +++  M  +G +P+  
Sbjct: 431 KAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMV 490

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           TY +++   CR   ++EA  L ++M   G      T  T+I GL    R ++A  + +E
Sbjct: 491 TYATLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRIQDE 549



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/226 (28%), Positives = 115/226 (50%), Gaps = 3/226 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C   KV +   L +Q+++  + P+   +  LI    +++      +L     A+ 
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDA 323
             P   TY  +I+GLCK  +   A  +++D+    G+ P  V Y+T+I GLC+   +   
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKG 120

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K+  EM  +G  PN  TYN++++        +EA  L ++M   G     +T+  +I G
Sbjct: 121 CKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKG 180

Query: 384 LCLHGRTDEAYHLFEE--MAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           LC  G  + A+ + +E  M + G+  DVIT+N+++ G CKE +I++
Sbjct: 181 LCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILD 226



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 126/285 (44%), Gaps = 44/285 (15%)

Query: 185 KIDRTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           K+D+   ++K      +Y D++  G LI       +V E Y+L  +    G  P    +N
Sbjct: 10  KVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYN 69

Query: 239 KLISRFCE--------------KKNFG----------------------RVSELLHTMVA 262
            +I   C+                +FG                      +  +LL  M  
Sbjct: 70  TMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAG 129

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R  AP+  TY  ++N L    +  EA+ +   +   G  P+ + +  +I GLCK G +  
Sbjct: 130 RGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 323 ARKMWFE--MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
           A ++  E  MI  GL P+  T+NS++ G C+   + +A  + K  L++G     VTY+TL
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTL 249

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I GL    + DEA  L  +M + G   + +TY+T++ G  K G++
Sbjct: 250 IDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRM 294


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 161/346 (46%), Gaps = 15/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P  V  N L  S+ + + +         +DS G  P+  +L + I   
Sbjct: 57  FNRMLHMHP--PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSF 114

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C    +  AF   +K+ ++G      T+ + + G     +      L+  +I  G+    
Sbjct: 115 CHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIGEGFQPNV 174

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C  G  +    LLR + +    P+   +  +I   C+ +       L   
Sbjct: 175 VTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNLFSK 234

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV +  +PD FTY  +I+ LC   +      + N +     +PD V+++TV+  LCK G 
Sbjct: 235 MVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGK 294

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A  +   MI +G+ PN  TYN+++ G+C    ++EA ++   M+  GY    ++YNT
Sbjct: 295 ITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNT 354

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI G C   R D+A +LFEEM QK +  + +TYNTL+   C  G++
Sbjct: 355 LINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRL 399



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 159/335 (47%), Gaps = 13/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L + L +      A+  L S       P+       I  LC+   + EA
Sbjct: 169 GFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEA 228

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
           F  FSK+   G+   I T+ S +     +     V  L + +I S           ++ A
Sbjct: 229 FNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDA 288

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK++E ++++  ++  G+ P    +N L+   C +       ++  TMV    AP+
Sbjct: 289 LCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPN 348

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK ++  +A  +F ++ ++  +P+TV Y T++H  C +G L DA  ++ 
Sbjct: 349 VISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIALFH 407

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  ++   C+  +L+EA  L K +           Y  +I G+C  G
Sbjct: 408 EMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAG 467

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  +F  ++ KG+  +V TY  +I G C+ G
Sbjct: 468 ELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRG 502



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 148/334 (44%), Gaps = 13/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ +   L  SL     +K     L+   ++   P+       +  LC+ G I EA
Sbjct: 239 GISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEA 298

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   GV  ++ T+N+ + G       D   K++  ++ +GY         LI  
Sbjct: 299 HDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLING 358

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +   L  ++ +  L+P    +N L+   C          L H MVA  + PD
Sbjct: 359 YCKIQRMDKATYLFEEMCQKELIPNTVTYNTLM-HXCHVGRLQDAIALFHEMVAHGQIPD 417

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK     EA  +   ++     PD  +YT VI G+C+ G L  AR ++ 
Sbjct: 418 LATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFS 477

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL PN  TY  MI+G CR   L+EA +L  EM   G      TYNT+  GL  + 
Sbjct: 478 NLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNK 537

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
               A  L +EM  +G   DV T   L++  C +
Sbjct: 538 EALRAIQLLQEMLARGFSADVSTTTLLVEMLCDD 571



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 30/198 (15%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           +I  F  + +H G  PDL +  +L D L +      AM  L   + +   P+     + I
Sbjct: 402 AIALFHEMVAH-GQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIVI 460

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             +C +G +E A   FS L   G+  +++T+                            +
Sbjct: 461 DGMCRAGELEAARDIFSNLSSKGLRPNVRTYT--------------------------IM 494

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C  G + E  +L  ++  +G  P+   +N +     + K   R  +LL  M+AR  
Sbjct: 495 INGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGF 554

Query: 266 APDNFTYEEVINGLCKSR 283
           + D  T   ++  LC  +
Sbjct: 555 SADVSTTTLLVEMLCDDK 572



 Score = 45.8 bits (107), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 44/106 (41%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DA   +  M+H    P+   +N ++    +         L  +M   G      T N 
Sbjct: 50  LDDALSSFNRMLHMHPPPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNI 109

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI   C   R   A+ +  ++ + G   D  T+ TLI+G C EGKI
Sbjct: 110 LINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKI 155


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 180/399 (45%), Gaps = 17/399 (4%)

Query: 40  YTEIAKQVCK---ITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWL 96
           Y  + K VCK   + +      + ++  I             +LK+QN   +     +  
Sbjct: 379 YNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK 438

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGL 153
            S+    P   +C ++ + L    + + A    + + S G  PN       I+   + G 
Sbjct: 439 KSN--LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGR 496

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            +EA      + + GV   +  +NS ++G  K  + +       ++IE G          
Sbjct: 497 FQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGA 556

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +C  G++       +++L  G+ P +     LI  +C++ +    + +   M+ R+
Sbjct: 557 LIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATSIFRCMLGRS 616

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +I+GL ++ K   A  + ++  E+G VPD   Y ++I G CK G +G A 
Sbjct: 617 VHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAF 676

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M  KG+ PN  TYN++I+G C+   +E A+ L   +  KG     VTY T+I G 
Sbjct: 677 QLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGY 736

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  G   +A+ LF+EM  KG+  D   Y+ LI G  KEG
Sbjct: 737 CKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEG 775



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N + +  ++ +      D L     +   P   +  + I  LC  G IE+A
Sbjct: 406 GIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDA 465

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  +  +GV  +   + + + G ++  R     ++   + + G          +I  
Sbjct: 466 SRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIG 525

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K+ E  + L +++E GL P    +  LI  +C+             M+    AP+
Sbjct: 526 LCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +     +I+G CK     EA  +F  +  R   PD   Y+ +IHGL + G L  A ++  
Sbjct: 586 DVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLS 645

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E + KGL+P+ +TYNS+I G+C+   + +A +LH+ M  KG     +TYN LI GLC  G
Sbjct: 646 EFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAG 705

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + A  LF+ +  KG+  + +TY T+I GYCK G +
Sbjct: 706 EIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNL 742



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/348 (29%), Positives = 166/348 (47%), Gaps = 14/348 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQC 147
           R F+ + S  G  P+ V    L    V+   F+ A+  L   D  G  P+       I  
Sbjct: 467 RVFEIMVS-LGVKPNAVIYTTLIKGHVQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIG 525

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC+S  +EEA     ++ E G+  ++ T+ + + G  K     +  + + +++  G    
Sbjct: 526 LCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPN 585

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  +C +G  +E   + R +L   + P+   ++ LI             ELL 
Sbjct: 586 DVVCTALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLS 645

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
             + +   PD FTY  +I+G CK     +A+++   + ++G  P+ + Y  +I+GLCK G
Sbjct: 646 EFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAG 705

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  AR+++  +  KGL  N  TY ++I GYC+  NL +A RL  EM  KG    +  Y+
Sbjct: 706 EIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYS 765

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            LI G    G T++A  LF E  QKG F    + N L+ G+CK GK++
Sbjct: 766 ALIDGCRKEGNTEKALSLFLESVQKG-FASTSSLNALMDGFCKSGKVI 812



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 195/482 (40%), Gaps = 84/482 (17%)

Query: 20  QNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREF 79
           +  N +  N   +T+ +  +  EI   +      +  WE  L   + S   +  +     
Sbjct: 22  RTQNRKANNFCSKTQNNSNIVNEITTFL-----NQKNWESLL--PLVSNKLSPDVVHSVI 74

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA------MDFLDSTG 133
            KQ N+    + FF W+    GFS  L S ++L   L  +R F  A      M  + S G
Sbjct: 75  TKQVNDPKRLLDFFNWVQFQMGFSQKLQSFSILALILCNSRLFSRADSVVNQMIMMSSGG 134

Query: 134 FSPNPNSL---------------------------ELYIQCLCESGLIEEAFCAFSKLKE 166
           +S   +SL                           EL I    + GL +EA   F   K 
Sbjct: 135 YSEILDSLIKSCKEFDLNNVNGNENSNNNDRGVVFELLIDGYKKKGLFDEAVSFFLGAKR 194

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSE 217
            G    +   N  L   +K ++ +L W+ Y+ ++E+          +LI A    G   E
Sbjct: 195 NGFVVGLLCCNGLLSDLLKANKLELFWRFYNGMLEANVLHDVYTYTHLINAHFRAGNAKE 254

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G  LL ++ E G  P    +N +I   C         EL   M  +    D FTY  +I+
Sbjct: 255 GKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILID 314

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K ++  EA  +  ++  +G  P  V YT +I G  + G  G+A ++  EM+ +G+  
Sbjct: 315 GFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKL 374

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA--------------- 382
           N +TYN+++ G C+  ++E+A  L  EM+  G    T TYN +I                
Sbjct: 375 NLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLL 434

Query: 383 --------------------GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                               GLC HG  ++A  +FE M   G+  + + Y TLI+G+ +E
Sbjct: 435 SEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQE 494

Query: 423 GK 424
           G+
Sbjct: 495 GR 496



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 155/335 (46%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP LV+ NV+   L  A     A +    +D  G   +  +  + I    +     EA
Sbjct: 266 GCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEA 325

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G+      + + + G ++   +   +++  +++  G          L++ 
Sbjct: 326 KLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKG 385

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +   LL +++  G+ P+   +N +I  + +++N  RV +LL  M   N  P 
Sbjct: 386 VCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNLVPT 445

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T   +INGLC+     +A RVF  +   G  P+ V+YTT+I G  + G   +A ++  
Sbjct: 446 AYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVRILK 505

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG+ P+   YNS+I G C+   +EEAK    EM+++G      TY  LI G C  G
Sbjct: 506 VMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSG 565

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               A   F+EM   GI  + +    LI GYCKEG
Sbjct: 566 EMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEG 600



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 144/306 (47%), Gaps = 9/306 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           ++  G SP+  +  + I  LC +G ++EAF     + + G+   + T++  + G  K  R
Sbjct: 262 MEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKR 321

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                 +  ++   G          LI  F   G   E + +  ++L  G+      +N 
Sbjct: 322 CTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNA 381

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           L+   C+  +  +   LL+ M+     PD  TY  +I G  K +       + +++K+  
Sbjct: 382 LVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSN 441

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            VP       +I+GLC+ G + DA +++  M+  G+ PN   Y ++I G+ +    +EA 
Sbjct: 442 LVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAV 501

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R+ K M  KG     + YN++I GLC   + +EA     EM ++G+  +V TY  LI GY
Sbjct: 502 RILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGY 561

Query: 420 CKEGKI 425
           CK G++
Sbjct: 562 CKSGEM 567



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 150/328 (45%), Gaps = 30/328 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++++ N L + L +A   + A +  D     G + N  +    I   C+SG + +A
Sbjct: 686 GISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKA 745

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           F  F ++   GV      +++ + GC K   T+    L+ + ++ G+             
Sbjct: 746 FRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGF------------- 792

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                            ++ N L+  FC+       ++LL  MV ++  PD+ TY  +I+
Sbjct: 793 --------------ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILID 838

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
             CK+    EA + F D+++R  +P+ + YT ++ G    G   +   ++ EMI K + P
Sbjct: 839 YHCKTGFLKEAEQFFVDMQKRNLMPNALTYTALLSGYNMAGRRSEMFALFDEMIAKDIEP 898

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  T++ MI  + +  +  +  +L  +ML KG   +    + LI  LC      E   + 
Sbjct: 899 DGVTWSVMIDAHLKEGDHVKTLKLVDDMLKKGGNVSKNVCHVLIDPLCRKEHVSEVLKVL 958

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E++ ++G+   + T +TL++ + K GK+
Sbjct: 959 EKIEEQGLNLSLATCSTLVRCFHKAGKM 986


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/348 (30%), Positives = 161/348 (46%), Gaps = 18/348 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSC--NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           +I  FQ L       PD   C  N+L   L  A   + A    D     P+  +  + I 
Sbjct: 250 AIELFQGL-------PDKNVCSYNILLKVLCGAGRVEDARQLFDEMASPPDVVTYGILIH 302

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL-LGCIKIDRTDLVW----KLYHDLI- 200
             C  G +E A      +   GV  +   + S + L C K   +D +      ++H +I 
Sbjct: 303 GYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVIL 362

Query: 201 -ESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            E+ Y  ++  FCN G +        ++   GL  +   +  LI+  C         ++L
Sbjct: 363 DEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVL 422

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+AR    D  TY  +++G CK  K  EA++V N + +RG  P+ V YT +  GLCK 
Sbjct: 423 QEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQ 482

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +  A ++  EM +KGL  N  TYNS+I+G C+   L++A R   +M   G      TY
Sbjct: 483 GDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTY 542

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TLI  LC  G  D A+ L +EM   GI   ++TYN L+ G+C  G++
Sbjct: 543 TTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRV 590



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 18/332 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+  +L          + A+  LD   + G  PN       +  LC+ G + +A   
Sbjct: 292 PDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTV 351

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLV----W-------KLYHDLIESGYLIQA 208
              +    V      + + L G C   ++ DLV    W        L  D +    LI  
Sbjct: 352 VEDMVHHKVILDEAVYTTVLSGFC---NKGDLVSARRWFDEMQRKGLATDGVTYTTLING 408

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E  ++L+++L   L  +   +  L+  +C++       ++ +TMV R  AP+
Sbjct: 409 LCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTMVQRGVAPN 468

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  + +GLCK      A  + +++  +G   +   Y ++I+GLCK G+L  A +   
Sbjct: 469 VVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQAMRTMA 528

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   GL P+ YTY ++I   C+   L+ A  L +EMLD G   T VTYN L+ G C+ G
Sbjct: 529 DMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSG 588

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           R +    L E M +K I  +  TYN+L++ YC
Sbjct: 589 RVEGGKKLLEWMLEKNIHPNATTYNSLMKQYC 620



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 110/230 (47%), Gaps = 24/230 (10%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRF-----------CEKKNFGRVSELLHTMVARNRA--- 266
           LLR+V + G+ P   A N ++SR               KN    + LL  +    R    
Sbjct: 222 LLRRVRQYGISPSPEACNAVLSRLPLDEAIELFQGLPDKNVCSYNILLKVLCGAGRVEDA 281

Query: 267 ----------PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
                     PD  TY  +I+G C   +   A ++ +D+  RG  P+  +YT+V+  LC 
Sbjct: 282 RQLFDEMASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCD 341

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + DA  +  +M+H  ++ +E  Y +++ G+C   +L  A+R   EM  KG     VT
Sbjct: 342 KGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGLATDGVT 401

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           Y TLI GLC  G   EA  + +EM  + +  D +TY  L+ GYCK GK+ 
Sbjct: 402 YTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMA 451



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/328 (23%), Positives = 141/328 (42%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G + D V+   L + L  A   K A   L    +     +  +  + +   C+ G + EA
Sbjct: 394 GLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEA 453

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   + + + GV  ++ T+ +   G  K        +L H++   G          LI  
Sbjct: 454 FQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 513

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +    +  +   GL P+   +  LI   C+     R  +LL  M+     P 
Sbjct: 514 LCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPT 573

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NG C S +     ++   + E+   P+   Y +++   C    +    +++ 
Sbjct: 574 IVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYK 633

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  + + PNE TYN +I G+C+  +++EA+  H EM++KG+  T  +Y+ LI  L    
Sbjct: 634 GMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKK 693

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +  EA  LF +M ++G   +   YN  I
Sbjct: 694 KFVEARKLFHDMRKEGFTAEPDVYNFYI 721



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 72/279 (25%), Positives = 127/279 (45%), Gaps = 12/279 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L D L +    + A + L    + G   N  +    I  LC++G +++A
Sbjct: 464 GVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQA 523

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               + +   G+   + T+ + +    K    D    L  +++++G          L+  
Sbjct: 524 MRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNG 583

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G+V  G +LL  +LE  + P  T +N L+ ++C   N    +E+   M +RN  P+
Sbjct: 584 FCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPN 643

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G CK+R   EA    N++ E+G+      Y+ +I  L K     +ARK++ 
Sbjct: 644 ENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVEARKLFH 703

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           +M  +G       YN  I      DNLE    L  E+++
Sbjct: 704 DMRKEGFTAEPDVYNFYIDFNFNEDNLEATLALCDELVE 742



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA  +F  L ++    +   Y  ++  LC  G + DAR+++ EM      P+  TY  +I
Sbjct: 249 EAIELFQGLPDK----NVCSYNILLKVLCGAGRVEDARQLFDEMASP---PDVVTYGILI 301

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           HGYC +  LE A +L  +M+ +G       Y +++A LC  GR  +A  + E+M    + 
Sbjct: 302 HGYCALGELENAVKLLDDMVARGVEPNATVYTSVVALLCDKGRVSDALTVVEDMVHHKVI 361

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
            D   Y T++ G+C +G +V+
Sbjct: 362 LDEAVYTTVLSGFCNKGDLVS 382


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+  +L ++  +   +K AM  LD     G +P+  +  + +  +C+ G +++A   
Sbjct: 193 PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEF 252

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              L   G   +  ++N  L G    +R +   +L  ++ + G          LI   C 
Sbjct: 253 LKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCR 312

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G V    E+L Q+ + G  P + ++N L+  FC++K   +    L  MV+R   PD  +
Sbjct: 313 KGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVS 372

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LC+S +   A  + + LK++G  P  + Y TVI GL K G   +A ++  EM+
Sbjct: 373 YNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV 432

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY+++  G CR D +E+A R   ++ D G    TV YN +I GLC    T 
Sbjct: 433 SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETH 492

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  LF  M   G   +  TY  LI+G   EG I
Sbjct: 493 SAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLI 526



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 146/333 (43%), Gaps = 32/333 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  +I F + L S YG  P+ VS N++   L  A  ++ A   M  +   G  PN 
Sbjct: 242 QEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 300

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  LC  GL+E A     ++ + G   +  ++N                     
Sbjct: 301 VTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNP-------------------- 340

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+ AFC   K+ +    L  ++  G  P+  ++N L++  C         ELLH
Sbjct: 341 ------LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 394

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +  AP   +Y  VI+GL K+ K  EA  + N++  +G  PD + Y+T+  GLC+  
Sbjct: 395 QLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 454

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + DA + + ++   G+ PN   YN++I G C+      A  L   M+  G      TY 
Sbjct: 455 RIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 514

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKG--IFRDV 409
            LI GL   G   EA  L +E+  +G  I  DV
Sbjct: 515 ILIEGLAYEGLIKEARDLLDELCSRGEEILLDV 547



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 111/221 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+  C  G+ +    +L ++L    VP+   +  L+   C++  + +  +LL  M  + 
Sbjct: 166 LIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKG 225

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  V+NG+C+  +  +A     +L   G  P+TV Y  V+ GLC      DA 
Sbjct: 226 CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAE 285

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM  KG  PN  T+N +I   CR   +E A  + +++   G    +++YN L+   
Sbjct: 286 ELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAF 345

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   + D+A    + M  +G + D+++YNTL+   C+ G++
Sbjct: 346 CKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 386



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 109/221 (49%), Gaps = 8/221 (3%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+     G+ +E     R+VL     P+  A+N +++ +C     G+V         R 
Sbjct: 104 LIKKLSASGRTAEA----RRVLA-ACGPDVMAYNAMMAGYC---GAGQVDAARRWCAERA 155

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D +T + +I GLC   +   A  V +++  R  VPD V YT ++   CK      A 
Sbjct: 156 VERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAM 215

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+  EM  KG  P+  TYN +++G C+   +++A    K +   G    TV+YN ++ GL
Sbjct: 216 KLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 275

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   R ++A  L  EM QKG   +V+T+N LI   C++G +
Sbjct: 276 CTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLV 316



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +  L + G L +A      ++     P+  T  ++I          EA+R+         
Sbjct: 74  LRSLVRRGELDEA----LRLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----AC 124

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G   + YN ++AG C  G+ D A       A++ + RD  T +TLI+G C  G+  N
Sbjct: 125 GPDVMAYNAMMAGYCGAGQVDAARRW---CAERAVERDAYTCDTLIRGLCGRGRTAN 178


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G+ PN  +L   ++ LC  G ++EA     K+   G   S  ++   + G  KI  T   
Sbjct: 123 GYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIGETRAA 182

Query: 193 ---------WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
                    W +  +++    +I   C D  V E Y+L  +++  G+ P+   ++ L+S 
Sbjct: 183 IRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSG 242

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           FC      R  +LL+ MV  N  PD +TY  +++ LCK  K  EA  V   + +     D
Sbjct: 243 FCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLD 302

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V+Y+T++ G C +  + +A+++++ M   G+ P+ + Y+ MI+G C+I  ++EA  L +
Sbjct: 303 VVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFE 362

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E+  K     TVTY +LI  LC  GR    + LF+EM  +G   DVITYN LI   CK G
Sbjct: 363 EIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNG 422

Query: 424 KI 425
            +
Sbjct: 423 HL 424



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 172/347 (49%), Gaps = 13/347 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYI 145
           ++RF   + +  GF    +S  +L + +    E RA    +  ++     PN     + I
Sbjct: 147 ALRFHDKVLAQ-GFRLSGISYGILINGVCKIGETRAAIRLLRRIERWSIRPNVVIYSMII 205

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CI--KIDRT-DLVWKLY----- 196
             LC+  L++EA+  ++++   G+   + T++  + G CI  +++R  DL+ ++      
Sbjct: 206 DRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENIN 265

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D+     L+ A C +GKV E   +L  +++  +  +   ++ L+  +C          +
Sbjct: 266 PDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRV 325

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            +TM      PD   Y  +INGLCK ++  EA  +F ++ ++  VPDTV YT++I  LCK
Sbjct: 326 FYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCK 385

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +     ++ EM+ +G  P+  TYN++I   C+  +L+ A  L  +M D+       T
Sbjct: 386 SGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYT 445

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  L+ GLC  GR   A   F+++  KG   +V TY  +I G CKEG
Sbjct: 446 FTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEG 492



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 147/318 (46%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ ++L            A+D L+       +P+  +  + +  LC+ G ++EA
Sbjct: 228 GISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEA 287

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + +  V   +  +++ + G   ++  +   ++++ + + G          +I  
Sbjct: 288 ENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMGVTPDVHCYSIMING 347

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E   L  ++ +  +VP+   +  LI   C+      V +L   M+ R + PD
Sbjct: 348 LCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPD 407

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+ LCK+     A  +FN +K++   P+   +T ++ GLCK+G L +A + + 
Sbjct: 408 VITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQ 467

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ KG   N  TY  MI+G C+   L+EA  L   M D G     VT+  +I       
Sbjct: 468 DLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDAVTFEIMIRAFFDKD 527

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A  L  EM  +G+ 
Sbjct: 528 ENDKAEKLVREMIARGLL 545



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 127/264 (48%), Gaps = 15/264 (5%)

Query: 176 WNSALLGCIKIDRTDLVWKLYHDL----IESGY-----LIQAFCNDGKVSEGYELLRQVL 226
           +N  L+  + + R      LY  +    +E  Y     +I  FC+ G+V   +  + ++L
Sbjct: 61  FNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSGVSKIL 120

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLH---TMVARNRAPDNFTYEEVINGLCKSR 283
           + G  P     N L+   C +   G+V E L     ++A+       +Y  +ING+CK  
Sbjct: 121 KLGYQPNTITLNTLMKGLCLE---GKVKEALRFHDKVLAQGFRLSGISYGILINGVCKIG 177

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +   A R+   ++     P+ V+Y+ +I  LCK   + +A  ++ EM+ KG+ P+  TY+
Sbjct: 178 ETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYS 237

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            ++ G+C +  L  A  L  EM+ +       TY  L+  LC  G+  EA ++   M + 
Sbjct: 238 ILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKA 297

Query: 404 GIFRDVITYNTLIQGYCKEGKIVN 427
            +  DV+ Y+TL+ GYC   ++ N
Sbjct: 298 CVNLDVVVYSTLMDGYCLVNEVNN 321



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 94/194 (48%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FNK++      K +     L   M      PD FT   +IN  C   + + A+  
Sbjct: 56  PHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIIINCFCHFGQVVLAFSG 115

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            + + + GY P+T+   T++ GLC  G + +A +   +++ +G   +  +Y  +I+G C+
Sbjct: 116 VSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFRLSGISYGILINGVCK 175

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           I     A RL + +         V Y+ +I  LC     DEAY L+ EM  KGI  DV+T
Sbjct: 176 IGETRAAIRLLRRIERWSIRPNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVT 235

Query: 412 YNTLIQGYCKEGKI 425
           Y+ L+ G+C  G++
Sbjct: 236 YSILVSGFCIVGQL 249



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN +      P T  +  ++  L  +     A  ++ +M    + P+ +T N +I
Sbjct: 41  DAVSQFNHMFHVHPTPHTFHFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNIII 100

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C    +  A     ++L  GY   T+T NTL+ GLCL G+  EA    +++  +G  
Sbjct: 101 NCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQGFR 160

Query: 407 RDVITYNTLIQGYCKEGK 424
              I+Y  LI G CK G+
Sbjct: 161 LSGISYGILINGVCKIGE 178


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+  +L ++  +   +K AM  LD     G +P+  +  + +  +C+ G +E+A
Sbjct: 196 GCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDA 255

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G   +  ++N  L G    +R +   KL  ++   G          LI  
Sbjct: 256 MEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISF 315

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G V    E+L Q+ + G  P + ++N L+  FC++K   +  E +  MV+R   PD
Sbjct: 316 LCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPD 375

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  ++  LC++ +   A  + + LK++G  P  + Y TVI GL K G   +A ++  
Sbjct: 376 IVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLD 435

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL P+  TY+++  G CR D +EEA R   ++ D G   T   YN ++ GLC   
Sbjct: 436 EMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRR 495

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T  A  LF  M   G   +  TY  L++G   EG +
Sbjct: 496 ETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLV 532



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 147/313 (46%), Gaps = 18/313 (5%)

Query: 125 AMDFLDS-TGFSP-NPNSL---ELYIQCLCESGLIEEAFCAFSKLKEMGVFGS-IKTWNS 178
           A+  +DS  G +P +P ++      I+ LC SG   +A       + +   G  +  +N+
Sbjct: 86  ALRLVDSLAGLNPPSPAAVGPCAALIKKLCASGRTADAR------RVLAASGPDVMVYNA 139

Query: 179 ALLGCIKIDRTDLVWKLYHDL-IES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            + G     + D   +L  D+ +E        LI+  C  G+ S    +L  +   G +P
Sbjct: 140 MVAGYCGAGQLDAARRLVADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLP 199

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +  L+   C++  + +  +LL  M  +  APD  TY  V+NG+C+  +  +A    
Sbjct: 200 DVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFL 259

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            +L   G  P+TV Y  V+ GL       DA K+  EM HKG  PN  T+N +I   CR 
Sbjct: 260 KNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRR 319

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E A  + ++M   G    +++YN L+   C   +  +A    E M  +G + D+++Y
Sbjct: 320 GLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSY 379

Query: 413 NTLIQGYCKEGKI 425
           NTL+   C+ G++
Sbjct: 380 NTLLTALCRNGEV 392



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 145/328 (44%), Gaps = 30/328 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  ++ F + L S YG  P+ VS N++   L  A  ++ A   M+ +   G  PN 
Sbjct: 248 QEGRVEDAMEFLKNLPS-YGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  LC  GL+E A     ++ + G   +  ++N                     
Sbjct: 307 VTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNP-------------------- 346

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+ AFC   K+ +  E +  ++  G  P+  ++N L++  C         ELLH
Sbjct: 347 ------LLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLH 400

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +  +P   +Y  VI+GL K+ K  EA  + +++  +G  PD + Y+T+  GLC+  
Sbjct: 401 QLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIASGLCRED 460

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +A + + ++   G+ P    YN+++ G C+      A  L   M+  G      TY 
Sbjct: 461 RIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYT 520

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            L+ GL   G   EA  LF ++  +G+ 
Sbjct: 521 ILVEGLAYEGLVKEARELFAQLCSRGVV 548



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/220 (21%), Positives = 94/220 (42%), Gaps = 12/220 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
            YG +P+ +S N L  +  + +    AM+F++   S G  P+  S    +  LC +G ++
Sbjct: 334 QYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVD 393

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A     +LK+ G    + ++N+ + G  K  +T    +L  ++   G          + 
Sbjct: 394 VAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYSTIA 453

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C + ++ E      +V + G+ P    +N ++   C+++      +L   M++    
Sbjct: 454 SGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCM 513

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           P+  TY  ++ GL       EA  +F  L  RG V   +M
Sbjct: 514 PNESTYTILVEGLAYEGLVKEARELFAQLCSRGVVNKKLM 553



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 14/118 (11%)

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTY----NSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           L + G L DA ++   +   GL P          ++I   C      +A+R+        
Sbjct: 77  LVRRGELDDALRLVDSL--AGLNPPSPAAVGPCAALIKKLCASGRTADARRVLA-----A 129

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            G   + YN ++AG C  G+ D A  L  +M    +  D  TYNTLI+G C  G+  N
Sbjct: 130 SGPDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSN 184


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 15/339 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S  G  PD  +   L + L         +D +   G SP+ +   ++     + G+I++A
Sbjct: 269 SARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKA 328

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+K+++ G+  ++  + + +    K+ R D     ++ +I  G          L+  
Sbjct: 329 MDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYG 388

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
            C   K     EL+ ++L+ G+ P    FN LI   C   N GRV E   L+  M     
Sbjct: 389 LCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLC---NVGRVMEGRRLIDLMEHVGV 445

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD F+Y  +I+G C + +  EA +VF+ +   G  P  V Y T++HG C    + DA  
Sbjct: 446 RPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRIDDAYC 505

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG+ P   TYN+++HG  +     EAK L+  M++ G      TYN ++ GLC
Sbjct: 506 LFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLC 565

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                DEA+ +F+ +  KG+  ++IT+  +I    K G+
Sbjct: 566 KSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 604



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 171/345 (49%), Gaps = 12/345 (3%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
           F  L    G SPD    N+ F +  +      AMD  +     G SPN  +    I  LC
Sbjct: 296 FLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALC 355

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           + G +++A   F+++   GV  +I  +NS + G   +D+ +   +L +++++ G      
Sbjct: 356 KLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAV 415

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI   CN G+V EG  L+  +   G+ P+  ++  LIS +C         ++   M
Sbjct: 416 FFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGM 475

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           V+   +P   TY  +++G C + +  +AY +F ++  +G  P  V Y T++HGL +    
Sbjct: 476 VSIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRF 535

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A++++  MI+ G   + YTYN +++G C+ + ++EA ++ + +  KG     +T+  +
Sbjct: 536 SEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIM 595

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I  L   GR ++A  LF  +   G+  +V+TY  + +   +EG +
Sbjct: 596 IGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSL 640



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 192/425 (45%), Gaps = 30/425 (7%)

Query: 23  NTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK- 81
           N  +R  SI+   +   Y+ +   +C++ R K  +    L     +  ND +   + LK 
Sbjct: 84  NRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRVND-IVINQLLKG 142

Query: 82  --QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFS 135
                 V  ++          G +PD VS ++L          + A++ L    +  G S
Sbjct: 143 LCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALELLRMMANDHGRS 202

Query: 136 PNPN--SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             PN  +    I  LC++ L + A   F ++ + GV  +  T+N  + G + I +    W
Sbjct: 203 CPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGK----W 258

Query: 194 KLYHDLIES-------------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           K    ++E              G L+   C    +SE +  L  ++E+GL P++  FN  
Sbjct: 259 KEVVQMLEKMSARGLKPDCYTYGSLLNYLC---ALSEMHSFLDLMVENGLSPDHHIFNIF 315

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
            S + +     +  ++ + M     +P+   Y  +I+ LCK  +  +A   FN +   G 
Sbjct: 316 FSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGV 375

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+ V++ ++++GLC +     A ++ +EM+ +G+ PN   +N++I   C +  + E +R
Sbjct: 376 TPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRR 435

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L   M   G      +Y  LI+G CL GRTDEA  +F+ M   G+    +TYNTL+ GYC
Sbjct: 436 LIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 495

Query: 421 KEGKI 425
              +I
Sbjct: 496 SASRI 500



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/393 (26%), Positives = 162/393 (41%), Gaps = 90/393 (22%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LF+ +V   + KVA          PN  +  + I CLC  G ++ +F  F  + + G   
Sbjct: 82  LFNRMVRECSIKVA----------PNTCTYSILIGCLCRMGRLKHSFATFGLILKTGWRV 131

Query: 172 SIKTWNSALLGCIKIDRT----DLVWK------LYHDLIESGYLIQAFCNDGKVSEGYEL 221
           +    N  L G     R     D++ +         D +    L++ FCN+ +  E  EL
Sbjct: 132 NDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGFCNENRAEEALEL 191

Query: 222 LR--------------------------------------QVLEDGLVPENTAFNKLISR 243
           LR                                      Q++++G+ P N  +N LI  
Sbjct: 192 LRMMANDHGRSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHG 251

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC----------------------- 280
           +     +  V ++L  M AR   PD +TY  ++N LC                       
Sbjct: 252 YLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHHI 311

Query: 281 ---------KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
                    K     +A  +FN +++ G  P+ V Y  +I  LCK+G + DA   + +MI
Sbjct: 312 FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           ++G+ PN   +NS+++G C +D  E A+ L  EMLD+G     V +NTLI  LC  GR  
Sbjct: 372 NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVM 431

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           E   L + M   G+  D  +Y  LI GYC  G+
Sbjct: 432 EGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGR 464



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/341 (24%), Positives = 143/341 (41%), Gaps = 16/341 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYI 145
           ++F Q ++   G +P++V  N L   L       RA ++  + LD  G  PN       I
Sbjct: 365 VKFNQMINE--GVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ-GICPNAVFFNTLI 421

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC  G + E       ++ +GV     ++   + G     RTD   K++  ++  G  
Sbjct: 422 CNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLS 481

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+  +C+  ++ + Y L R++L  G+ P    +N ++    + K F    EL
Sbjct: 482 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKEL 541

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M+      D +TY  ++NGLCKS    EA+++F  L  +G   + + +T +I  L K
Sbjct: 542 YLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 601

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G   DA  ++  +   GL+PN  TY  +        +LEE   L   M   G    +  
Sbjct: 602 GGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQM 661

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            N L+  L   G    A     ++ ++    +  T + LI 
Sbjct: 662 LNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLIS 702


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 165/338 (48%), Gaps = 12/338 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
            +GFSP++V    L D   +    + A D    +   G   N  +  + I  L ++G+ +
Sbjct: 191 EFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKK 250

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           + F  + K++E GVF ++ T+N  +    K  RT   +KL+ ++ E G          LI
Sbjct: 251 QGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLI 310

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C + K +E  +++ Q+  DG+ P    +N LI  FC     G+   L   + +R  +
Sbjct: 311 GGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLS 370

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY  +++G CK      A +V  +++ERG  P  + YT +I    +M  +  A ++
Sbjct: 371 PSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDTFARMDNMEKAIQL 430

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M   GL P+ +TY+ +IHG+C    + EA RL K M+ K      V YNT++ G C 
Sbjct: 431 RSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPNKVIYNTMVLGYCK 490

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            G +  A  LF EM +K +  +V +Y  +I+  CKE K
Sbjct: 491 EGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERK 528



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 154/320 (48%), Gaps = 19/320 (5%)

Query: 113 FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
           FD LVE R F          GFSPN       I   C+ G IE+A   F ++ + G+  +
Sbjct: 183 FDLLVELREF----------GFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVAN 232

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
             T+   + G  K       +++Y  + E G          ++   C DG+  + ++L  
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFD 292

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++ E G+      +N LI   C +      ++++  M +    P+  TY  +I+G C   
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVG 352

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K  +A  +  DLK RG  P  V Y  ++ G CK G    A K+  EM  +G+ P++ TY 
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYT 412

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            +I  + R+DN+E+A +L   M + G      TY+ LI G C+ G+ +EA  LF+ M  K
Sbjct: 413 ILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAK 472

Query: 404 GIFRDVITYNTLIQGYCKEG 423
            +  + + YNT++ GYCKEG
Sbjct: 473 KLEPNKVIYNTMVLGYCKEG 492



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 142/290 (48%), Gaps = 8/290 (2%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---- 197
           E+ I    +S  ++ +   F+++ + G       +N+ L   +     +  W+ ++    
Sbjct: 98  EVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESKI 157

Query: 198 ----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
               D+   G +I+  C  G++ + ++LL ++ E G  P    +  LI   C++    + 
Sbjct: 158 KVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKA 217

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +L   M       + +TY  +I+GL K+  + + + ++  ++E G  P+   Y  V++ 
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQ 277

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            CK G   DA K++ EM  +G+  N  TYN++I G CR     EA ++  +M   G    
Sbjct: 278 HCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPN 337

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +TYNTLI G C  G+  +A  L  ++  +G+   ++TYN L+ G+CK+G
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKG 387



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 109/255 (42%), Gaps = 12/255 (4%)

Query: 101 GFSPDLVSCNVLFDSL---VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G S ++V+ N L   L   ++A      MD + S G +PN  +    I   C  G + +A
Sbjct: 298 GVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKLGKA 357

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 LK  G+  S+ T+N  + G  K   T    K+  ++ E G          LI  
Sbjct: 358 LSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILIDT 417

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F     + +  +L   + E GL P+   ++ LI  FC K      S L   MVA+   P+
Sbjct: 418 FARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLMVAKKLEPN 477

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  ++ G CK      A R+F +++E+   P+   Y  +I  LCK     +A  +  
Sbjct: 478 KVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRYMIEVLCKERKSKEAEGLVE 537

Query: 329 EMIHKGLLPNEYTYN 343
           +MI  G+ P++   N
Sbjct: 538 KMIDTGIDPSDSILN 552



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 92/213 (43%), Gaps = 35/213 (16%)

Query: 247 KKNFGRVSELLHTMV-ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP--- 302
           +  F   S LLH +  +      +  YE +IN   +S+    +   FN++ ++G+VP   
Sbjct: 71  QSQFFTSSSLLHYVTESETSETKSRLYEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSN 130

Query: 303 -------------------------------DTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
                                          D   +  VI G C+ G +  +  +  E+ 
Sbjct: 131 CFNNLLTFVVGSSSFNQWWRFFNESKIKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELR 190

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  PN   Y ++I G C+   +E+AK L  EM   G      TY  LI GL  +G   
Sbjct: 191 EFGFSPNVVIYTTLIDGCCKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKK 250

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + + ++E+M + G+F ++ TYN ++  +CK+G+
Sbjct: 251 QGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGR 283



 Score = 42.4 bits (98), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 47/118 (39%), Gaps = 34/118 (28%)

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL--------------------- 380
           Y  MI+ Y +  +L+ +     EM+DKG+   +  +N L                     
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 381 -------------IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                        I G C  G  ++++ L  E+ + G   +V+ Y TLI G CK G+I
Sbjct: 157 IKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEI 214


>gi|242084770|ref|XP_002442810.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
 gi|241943503|gb|EES16648.1| hypothetical protein SORBIDRAFT_08g003240 [Sorghum bicolor]
          Length = 722

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 177/372 (47%), Gaps = 22/372 (5%)

Query: 67  SFNFND---PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA---R 120
           SF +N     L  + F+K+ +++ L +        + G  P +V+ N +   L+++    
Sbjct: 308 SFTYNPLITGLLAKGFVKKADDLQLEME-------NEGIMPTVVTYNAMIHGLLQSGQVE 360

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           A +V    + + G  P+  +    +   C++G ++EA   F  L+  G+  ++ T+N  +
Sbjct: 361 AAQVKFVEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILI 420

Query: 181 LGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  ++   +   +L  +++E G          L++   N   ++   E   ++L  GL 
Sbjct: 421 DGYCRLGDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQ 480

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+  A+N  I          +   L   M+    + D  TY  +I+GLCK+    +A  +
Sbjct: 481 PDCFAYNTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDL 540

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              +   G  PD + YT +IH  C+ G L +ARK + +MI  GL P+  TY   IH YCR
Sbjct: 541 QMKMVHNGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCR 600

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             NL  A    ++ML++G     +TYN LI  LC  GRT  AY  F EM ++G+  +  T
Sbjct: 601 RGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYT 660

Query: 412 YNTLIQGYCKEG 423
           Y  LI G CKEG
Sbjct: 661 YTLLIDGNCKEG 672



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 147/327 (44%), Gaps = 12/327 (3%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N L   L+     K A D    +++ G  P   +    I  L +SG +E A   F +++ 
Sbjct: 312 NPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRA 371

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
           MG+   + T+NS L G  K         L+ DL  +G          LI  +C  G + E
Sbjct: 372 MGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEE 431

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L  +++E G +P+   +  L+       +     E    M+++   PD F Y   I 
Sbjct: 432 ARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIR 491

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                    +A+R+   +   G   DTV Y  +I GLCK G L DA+ +  +M+H GL P
Sbjct: 492 AELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQP 551

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  +IH +C    L EA++  K+M+  G   + VTY   I   C  G    AY  F
Sbjct: 552 DCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWF 611

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +M ++G+  + ITYN LI   C+ G+
Sbjct: 612 RKMLEEGVEPNEITYNVLIHALCRTGR 638



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 147/331 (44%), Gaps = 12/331 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L +   +A + K A+     L   G +P   +  + I   C  G +EEA
Sbjct: 373 GLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEEA 432

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND----- 212
                ++ E G    + T+   + G        +  + + +++  G     F  +     
Sbjct: 433 RRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIRA 492

Query: 213 ----GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G +++ + L   ++ +G+  +   +N LI   C+  N     +L   MV     PD
Sbjct: 493 ELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVHNGLQPD 552

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C+     EA + F D+   G  P  V YT  IH  C+ G L  A   + 
Sbjct: 553 CITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNLYSAYGWFR 612

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G+ PNE TYN +IH  CR    + A R   EML++G      TY  LI G C  G
Sbjct: 613 KMLEEGVEPNEITYNVLIHALCRTGRTQLAYRHFHEMLERGLVPNKYTYTLLIDGNCKEG 672

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             ++A   + EM Q GI  D +T+  L +G+
Sbjct: 673 NWEDAMRFYFEMHQNGIHPDYLTHKALFKGF 703



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/358 (24%), Positives = 151/358 (42%), Gaps = 11/358 (3%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
           FLK+  N  +++   +      G  P+ V+ NV+   L      + A + ++    S   
Sbjct: 247 FLKEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKA 306

Query: 139 NSLEL--YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---- 192
           +S      I  L   G +++A     +++  G+  ++ T+N+ + G ++  + +      
Sbjct: 307 SSFTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKF 366

Query: 193 -----WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
                  L  D+I    L+  +C  G + E   L   +   GL P    +N LI  +C  
Sbjct: 367 VEMRAMGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRL 426

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
            +      L   MV +   PD  TY  ++ G   +     A   F+++  +G  PD   Y
Sbjct: 427 GDLEEARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAY 486

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            T I     +G +  A ++   M+ +G+  +  TYN +I G C+  NL +AK L  +M+ 
Sbjct: 487 NTRIRAELTLGAIAKAFRLREVMMLEGISSDTVTYNILIDGLCKTGNLNDAKDLQMKMVH 546

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G     +TY  LI   C  G   EA   F++M   G+    +TY   I  YC+ G +
Sbjct: 547 NGLQPDCITYTCLIHAHCERGLLREARKFFKDMISDGLAPSAVTYTVFIHAYCRRGNL 604



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 142/309 (45%), Gaps = 12/309 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + S G +P+       ++ L ++   ++     +++ ++G+  SI T+N+ L   +K  R
Sbjct: 193 MASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKEGR 252

Query: 189 TDLVWKLYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            D V  L  ++   G            +I      G + E  E++  +         T +
Sbjct: 253 NDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFT-Y 311

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N LI+    K    +  +L   M      P   TY  +I+GL +S +   A   F +++ 
Sbjct: 312 NPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMRA 371

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G  PD + Y ++++G CK G L +A  ++ ++ H GL P   TYN +I GYCR+ +LEE
Sbjct: 372 MGLQPDVITYNSLLNGYCKAGSLKEALLLFGDLRHAGLAPTVLTYNILIDGYCRLGDLEE 431

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A+RL +EM+++G      TY  L+ G         A   F+EM  KG+  D   YNT I+
Sbjct: 432 ARRLKEEMVEQGCLPDVCTYTILMKGSHNACSLAMAREFFDEMLSKGLQPDCFAYNTRIR 491

Query: 418 GYCKEGKIV 426
                G I 
Sbjct: 492 AELTLGAIA 500



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 87/204 (42%), Gaps = 36/204 (17%)

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           H M +   APD      V+  L  + +  +   V  ++ + G  P  V Y T++    K 
Sbjct: 191 HEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFLKE 250

Query: 318 GWLGDARKMWFEMIHK--GLLPNEYTYNSMIHGYCRIDNLEEAK------RLHK------ 363
           G       +  EM  +  G LPN+ T+N +I G  R  +LEEA       RL K      
Sbjct: 251 GRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASSFT 310

Query: 364 ----------------------EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
                                 EM ++G   T VTYN +I GL   G+ + A   F EM 
Sbjct: 311 YNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQVEAAQVKFVEMR 370

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G+  DVITYN+L+ GYCK G +
Sbjct: 371 AMGLQPDVITYNSLLNGYCKAGSL 394



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 67/171 (39%), Gaps = 36/171 (21%)

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            F+++   G  PD      V+  L       D   +  EM+  G+ P+  TYN+++  + 
Sbjct: 189 AFHEMASHGVAPDVKDCNRVLRVLSDAARWDDICAVHAEMLQLGIEPSIVTYNTLLDSFL 248

Query: 351 RIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIAGLCLHGRTDEAYHLFE---------- 398
           +    ++   L KEM  +G G     VT+N +I GL   G  +EA  + E          
Sbjct: 249 KEGRNDKVAMLLKEMETRGSGCLPNDVTHNVVITGLARKGDLEEAAEMVEGMRLSKKASS 308

Query: 399 ------------------------EMAQKGIFRDVITYNTLIQGYCKEGKI 425
                                   EM  +GI   V+TYN +I G  + G++
Sbjct: 309 FTYNPLITGLLAKGFVKKADDLQLEMENEGIMPTVVTYNAMIHGLLQSGQV 359


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 166/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+ V+   L   L +    + A+  L S       PN  +    I CL +   + EA
Sbjct: 174 GFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              FS++   G+  ++ T+NS + G  K      V  L +++++S           L+ A
Sbjct: 234 LNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDA 293

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V+  ++++  +++ G+ P+   +  L+   C +       ++  TMV +  AP+
Sbjct: 294 LCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPN 353

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK ++  +A  +F ++ +R  VP+ V Y T+IHGLC +G L DA  ++ 
Sbjct: 354 VISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFH 413

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  ++   C+  +L++A  + K +          +YN +I G+C  G
Sbjct: 414 EMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVG 473

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  ++ KG+  DV TY  +I G C +G
Sbjct: 474 ELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQG 508



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 159/339 (46%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P +V    +  S+   + +   +     +DS G   +  +L + I   C    ++
Sbjct: 67  HMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVINSFCHLNRVD 126

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
             F   +K+ ++G      T+ + + G     +      L+  ++  G+         LI
Sbjct: 127 FGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQPNGVTYGTLI 186

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G       LLR +++    P    +N +I    + +       +   M+A+  +
Sbjct: 187 HGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGIS 246

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I+GLCK  +      + N++ +   +P+ V++TT++  LCK G +  A  +
Sbjct: 247 PNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDV 306

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              MI +G+ P+  TY +++ G+C    ++EA ++   M+ KG     ++Y+TLI G C 
Sbjct: 307 VDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLINGYCK 366

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             R D+A +LFEEM Q+ +  +++TYNTLI G C  G++
Sbjct: 367 IQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRL 405



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 147/335 (43%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ + N +   L    E +     M+ +  +   PN       +  LC+ G++  A
Sbjct: 244 GISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTTLVDALCKEGMVTIA 303

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIK--IDRTDLVWKLY------HDLIESGYLIQA 208
                 + + GV   + T+ + + G C++  +D  D V+          ++I    LI  
Sbjct: 304 HDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKGCAPNVISYSTLING 363

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +   L  ++ +  LVP    +N LI   C          L H MVA  + PD
Sbjct: 364 YCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPD 423

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+R   +A  +   ++     PD   Y  VI G+C++G L  A  ++ 
Sbjct: 424 LVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFS 483

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  KGL P+ +TY  MI+G C    L EA +L +EM   G      TYN +  G   + 
Sbjct: 484 SLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNN 543

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            T  A  L +EM  +G   D  T   +++    +G
Sbjct: 544 ETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDG 578



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 76/311 (24%), Positives = 141/311 (45%), Gaps = 12/311 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V    L D+L +     +A D +D     G  P+  +    +   C    ++EA   
Sbjct: 282 PNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKV 341

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
           F  +   G   ++ ++++ + G  KI R D    L+ ++         +    LI   C+
Sbjct: 342 FDTMVRKGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCH 401

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++ +   L  +++  G +P+   +  L+   C+ ++  +   +L  +   N APD  +
Sbjct: 402 VGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQS 461

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+G+C+  +   A  +F+ L  +G  PD   YT +I+GLC  G L +A K++ EM 
Sbjct: 462 YNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMN 521

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P++ TYN +  G+ R +    A +L +EML +G+     T   ++  L   G   
Sbjct: 522 TDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQ 581

Query: 392 EAYHLFEEMAQ 402
               +  E  Q
Sbjct: 582 SVKQILHEFVQ 592



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA   FN +      P  V +  ++  +  M        +  +M   G+  + YT   +I
Sbjct: 57  EALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAIVI 116

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C ++ ++    +  ++   G+   T T+ TLI GLC+ G+  EA HLF++M  +G  
Sbjct: 117 NSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVGEGFQ 176

Query: 407 RDVITYNTLIQGYCKEG 423
            + +TY TLI G CK G
Sbjct: 177 PNGVTYGTLIHGLCKVG 193



 Score = 40.0 bits (92), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 25/106 (23%), Positives = 44/106 (41%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A   +  M+H    P+   +  ++     + +      L K+M   G      T   
Sbjct: 55  IDEALSSFNRMLHMQPPPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTLAI 114

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I   C   R D  + +  ++ + G   D  T+ TLI+G C EGKI
Sbjct: 115 VINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKI 160


>gi|125548275|gb|EAY94097.1| hypothetical protein OsI_15870 [Oryza sativa Indica Group]
          Length = 554

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 158/324 (48%), Gaps = 13/324 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEE 156
           YGFS D  +C V+  SL E   FK   +F       G  PN  +   +I  LC+   +++
Sbjct: 202 YGFSLDNATCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQ 261

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLI 206
           AF    ++   G+  ++ T  + + G  KI  T+  ++L+  LI+S            +I
Sbjct: 262 AFHVLEEMVGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMI 321

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C +GK++    LL +++E GL P    +  LI   C+  +F R  EL++ M      
Sbjct: 322 GGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFL 381

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+ +TY  VI+G CK  K  EAY+V      +G   D + YT +I   CK G +  A  +
Sbjct: 382 PNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHITYALDL 441

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+  G  P+   Y S+I  YC+   +EE+++   + L  G   T  TY ++IAG C 
Sbjct: 442 FDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMIGLLPTKQTYTSMIAGYCK 501

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVI 410
            GR+  A  +FE M Q G F D I
Sbjct: 502 VGRSTMALRVFERMVQNGCFADSI 525



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 137/286 (47%), Gaps = 10/286 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           E+G    A   F  +   GV    +++ + ++ C +  + + V  L   +   G+     
Sbjct: 150 ETGSFVYARKVFDGMTRAGVCPDERSFRALVVVCCREGKVEEVDALLAAMWRYGFSLDNA 209

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               ++++ C  G+  +  E  R++LE G  P    +   I   C+++   +   +L  M
Sbjct: 210 TCTVVVRSLCEKGRFKDVSEFFRRMLEMGTPPNVVNYTAWIDGLCKRRYVKQAFHVLEEM 269

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGW 319
           V R   P+ +T+  +I+GLCK      A+R+F  L K   Y P+   YT +I G C+ G 
Sbjct: 270 VGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCREGK 329

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  A  +   M+ +GL PN  TY ++I G+C+  + + A  L  +M  +G+     TYN 
Sbjct: 330 LARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGGSFDRAFELMNKMKQEGFLPNIYTYNA 389

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I G C  G+  EAY +      +G+  D ITY  LI  +CK+G I
Sbjct: 390 VIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYTILITEHCKQGHI 435



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/283 (21%), Positives = 114/283 (40%), Gaps = 55/283 (19%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMD 127
           D L  R ++KQ  +VL  +          G  P++ +   L D L +     RAF++ + 
Sbjct: 251 DGLCKRRYVKQAFHVLEEM-------VGRGLKPNVYTHTTLIDGLCKIGWTERAFRLFLK 303

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            + S+ + PN ++  + I   C  G +  A     ++ E G+  +  T+ + + G  K  
Sbjct: 304 LIKSSSYKPNVHTYTVMIGGYCREGKLARAEMLLVRMVEQGLKPNTNTYTTLIGGHCKGG 363

Query: 188 RTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLR--------------- 223
             D  ++L + + + G+L         I  FC  GK+ E Y++LR               
Sbjct: 364 SFDRAFELMNKMKQEGFLPNIYTYNAVIDGFCKKGKIQEAYKVLRMATSQGLKFDKITYT 423

Query: 224 --------------------QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
                               +++E+G  P+  A+  LIS +C+++      +     +  
Sbjct: 424 ILITEHCKQGHITYALDLFDRMVENGCCPDIEAYTSLISTYCQQRQMEESQKFFDKCLMI 483

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
              P   TY  +I G CK  +   A RVF  + + G   D+++
Sbjct: 484 GLLPTKQTYTSMIAGYCKVGRSTMALRVFERMVQNGCFADSIL 526


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 161/332 (48%), Gaps = 12/332 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N +  SL ++   K AM+ LD        P+  +  + I+  C    + +A 
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAM 259

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
               ++++ G    + T+N  + G  K  R D   K  +D+  SG          ++++ 
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  +  +LL  +L  G  P    FN LI+  C K   GR  ++L  M      P++
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNS 379

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +++G CK +K   A      +  RG  PD V Y T++  LCK G + DA ++  +
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +  KG  P   TYN++I G  +     +A +L  EM  K     T+TY++L+ GL   G+
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA   F E  + G+  + +T+N+++ G CK
Sbjct: 500 VDEAIKFFHEFERMGVRPNAVTFNSIMLGLCK 531



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 175/347 (50%), Gaps = 19/347 (5%)

Query: 93  FQWLHS--HYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           F++L +  ++G  PD++ C  L   F  + + R     ++ L+ +G  P+  +  + I  
Sbjct: 122 FKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISG 181

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL-----GCIK-----IDRTDLVWKLYH 197
            C++G I  A    S L  M V   + T+N+ L      G +K     +DR  L    Y 
Sbjct: 182 YCKAGEINNAL---SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM-LQRDCYP 237

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D+I    LI+A C D  V +  +LL ++ + G  P+   +N L++  C++       + L
Sbjct: 238 DVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M +    P+  T+  ++  +C + + ++A ++  D+  +G+ P  V +  +I+ LC+ 
Sbjct: 298 NDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRK 357

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G LG A  +  +M   G  PN  +YN ++HG+C+   ++ A    + M+ +G     VTY
Sbjct: 358 GLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTY 417

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           NT++  LC  G+ ++A  +  +++ KG    +ITYNT+I G  K GK
Sbjct: 418 NTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 152/332 (45%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++         AM  LD     G +P+  +  + +  +C+ G ++EA   
Sbjct: 237 PDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            + +   G   ++ T N  L       R     KL  D++  G+         LI   C 
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    ++L ++ + G  P + ++N L+  FC++K   R  E L  MV+R   PD  T
Sbjct: 357 KGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT 416

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K  +A  + N L  +G  P  + Y TVI GL K G  G A K+  EM 
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            K L P+  TY+S++ G  R   ++EA +   E    G     VT+N+++ GLC   +TD
Sbjct: 477 AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTD 536

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A      M  +G      +Y  LI+G   EG
Sbjct: 537 RAIDFLVYMINRGCKPTETSYTILIEGLAYEG 568



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 82/323 (25%), Positives = 157/323 (48%), Gaps = 20/323 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+ NVL + + +      A+ FL+   S+G  PN  +  + ++ +C +G   +A
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328

Query: 158 FCAFSKLKEMGVFGSIKTWN--------SALLGCIKIDRTDLVWKL-----YHDLIESGY 204
               + +   G   S+ T+N          LLG       D++ K+       + +    
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLG----RAIDILEKMPKHGCQPNSLSYNP 384

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  FC + K+    E L +++  G  P+   +N +++  C+        E+L+ + ++ 
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P   TY  VI+GL K+ K  +A ++ ++++ +   PDT+ Y++++ GL + G + +A 
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K + E    G+ PN  T+NS++ G C+    + A      M+++G   T  +Y  LI GL
Sbjct: 505 KFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGL 564

Query: 385 CLHGRTDEAYHLFEEMAQKGIFR 407
              G   EA  L  E+  KG+ +
Sbjct: 565 AYEGMAKEALELLNELCNKGLMK 587



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 109/225 (48%), Gaps = 3/225 (1%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           +ES   ++     G++ EG++ L  ++  G VP+      LI  FC      + +++L  
Sbjct: 103 VESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEV 162

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           +      PD  TY  +I+G CK+ +   A  V + +      PD V Y T++  LC  G 
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGK 219

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  A ++   M+ +   P+  TY  +I   CR   + +A +L  EM D+G     VTYN 
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEMRDRGCTPDVVTYNV 279

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           L+ G+C  GR DEA     +M   G   +VIT+N +++  C  G+
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 8/202 (3%)

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           QV   GL      F+ L S        G  S    + V  +   +N   + V  G  +  
Sbjct: 62  QVESSGLNGRAQKFDTLASGHSNSNGNGHFSSANSSFVLEDVESNNHLRQLVRTGELE-- 119

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
              E ++   ++   G VPD +  TT+I G C+MG    A K+   +   G +P+  TYN
Sbjct: 120 ---EGFKFLENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYN 176

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            MI GYC+   +  A  +   M         VTYNT++  LC  G+  +A  + + M Q+
Sbjct: 177 VMISGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQR 233

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
             + DVITY  LI+  C++  +
Sbjct: 234 DCYPDVITYTILIEATCRDSGV 255



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 47/100 (47%)

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           F   +   +  +   N+ +    R   LEE  +  + M+  G     +   TLI G C  
Sbjct: 91  FSSANSSFVLEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRM 150

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G+T +A  + E +   G   DVITYN +I GYCK G+I N
Sbjct: 151 GKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINN 190



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 12/151 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G SP L++ N + D L +A     A+  LD   +    P+  +    +  L   G +
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           +EA   F + + MGV  +  T+NS +LG  K  +TD        +I  G          L
Sbjct: 501 DEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTIL 560

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           I+    +G   E  ELL ++   GL+  ++A
Sbjct: 561 IEGLAYEGMAKEALELLNELCNKGLMKRSSA 591


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 182/360 (50%), Gaps = 13/360 (3%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGF 134
           + L+ +N ++ ++  ++ +   YG  P + + N +  S  +    + A+D    +   G 
Sbjct: 210 KILRDKNLLVKALEVYRMM-GEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPKMQERGC 268

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            P+  +  + I  L + G +++A     ++ + G+  S  T+N  + G  K         
Sbjct: 269 YPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGLLVEALA 328

Query: 195 LYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           L+ +++  G          ++  FC +GK+S+  + L  +L+  L+P+  ++N LI  FC
Sbjct: 329 LWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFC 388

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              N G    LL  +  RN + +  TY  +I+GLC+      A ++  D+  RG  PD V
Sbjct: 389 RLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVV 448

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            YT +++G CK+G +  A++ + EM+H GL P+++ Y + I G  ++ +  +A +L +EM
Sbjct: 449 TYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEM 508

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L KG+    +TYN  + GLC  G  +EA  L ++M + G   D +TY + +  + + G +
Sbjct: 509 LTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHL 568



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/382 (28%), Positives = 175/382 (45%), Gaps = 22/382 (5%)

Query: 59  QTLLSDIPSFNFNDP-LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           Q  +SD  +    DP L  R     +    +++RFF+ + +  GF     +   +   LV
Sbjct: 91  QNWVSDKFNSVITDPQLLIRVLYSIREKPTIALRFFKCVLTQPGFKTSEYAFCAILQILV 150

Query: 118 EARAFKVAMDFLDSTGFSPNPNSLELY--IQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           +    K A   ++         S E+Y  +  L    L  +    F K+        +K 
Sbjct: 151 DNCLMKSAYWVMERI------ISFEMYGIVDVLIGGYLNYQCLLVFEKMMRNRFLPDVKN 204

Query: 176 WNSALLGCIKIDRTDLVWKL--YHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
            N  L   I  D+  LV  L  Y  + E G          ++ +FC  G+V    +L+ +
Sbjct: 205 CNRILK--ILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTMLHSFCKGGEVQRALDLVPK 262

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + E G  P    FN LI+   +K    +   L+  M         +TY  +I G CK   
Sbjct: 263 MQERGCYPSEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLICGYCKKGL 322

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            +EA  ++ ++  RG  P    + T+++G CK G + DAR+   +M+ K L+P+  +YN+
Sbjct: 323 LVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNT 382

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I+G+CR+ N+ EA  L  E+  +      VTYNTLI GLC  G  + A  L E+M  +G
Sbjct: 383 LIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRG 442

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           I  DV+TY  L+ G CK G ++
Sbjct: 443 IHPDVVTYTVLVNGACKLGNML 464



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 149/336 (44%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCN-VLFDSLVEARAFKVAMDFLD--STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP + S N +++    E +         D       P+  S    I   C  G I EA
Sbjct: 337 GVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEA 396

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           F    +L+   +  +I T+N+ + G  ++   +   KL  D+I  G          L+  
Sbjct: 397 FILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNG 456

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +    E   ++L  GL P+  A+   I    +  +  +  +L   M+ +   PD
Sbjct: 457 ACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGFPPD 516

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY   +NGLCK     EA  +   +   G+VPD V YT+ +H   + G L + R++++
Sbjct: 517 VITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFY 576

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G  P   TY  +IH +     L+ A     EM +KG     +TYN LI G C   
Sbjct: 577 DMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNVLINGFCKVR 636

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + D+A   F EM +KGIF +  TY  LI   C  GK
Sbjct: 637 KMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGK 672



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 145/334 (43%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLCESGLIEEAFCA 160
           PD++S N L            A   LD   F   S N  +    I  LC  G +E A   
Sbjct: 375 PDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKL 434

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV----- 215
              +   G+   + T+   + G  K+    +  + + +++  G     F    ++     
Sbjct: 435 KEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELK 494

Query: 216 ----SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
               ++ ++L  ++L  G  P+   +N  ++  C+  N     ELL  M+     PD+ T
Sbjct: 495 LGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVT 554

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   ++   ++    E   +F D+  RG  P  V YT +IH     G L  A   + EM 
Sbjct: 555 YTSFMHAHMENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQ 614

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG++PN  TYN +I+G+C++  +++A +   EM +KG      TY  LI   C  G+  
Sbjct: 615 EKGVVPNVITYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQ 674

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  L+ +M  K I  D  T+  L++   K+ K+
Sbjct: 675 EALRLYAQMLGKRIRPDSCTHGALLKKLDKDYKV 708


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/275 (34%), Positives = 136/275 (49%), Gaps = 9/275 (3%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
           +A  +F+++  M        +N+ L   +K  R   V  L+          DL     LI
Sbjct: 44  DAVASFNRMLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILI 103

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC+   ++  + +   +L+ G  P     N LI   C      R       +VA+   
Sbjct: 104 NCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQ 163

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            D  +Y  +INGLCK+ +     R+   L+     PD VMYTT+IH LCK   LGDA  +
Sbjct: 164 LDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDL 223

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EMI KG+ PN +TY ++IHG+C + NL+EA  L  EM  K       T+N LI  L  
Sbjct: 224 YSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAK 283

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            G+ DEA  LFEEM  K +F +++TY +LI G CK
Sbjct: 284 EGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCK 318



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 155/326 (47%), Gaps = 12/326 (3%)

Query: 110 NVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N +  SLV+ + +   +      +  G +P+  +L + I C C    I  AF  F+ + +
Sbjct: 65  NNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANILK 124

Query: 167 MGVFGSIKTWNSALLG---CIKIDRT-----DLVWKLYH-DLIESGYLIQAFCNDGKVSE 217
            G   +  T N+ + G   C +I R       +V + +  D +  G LI   C  G+   
Sbjct: 125 RGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKA 184

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LLR++    + P+   +  +I   C+ K  G   +L   M+ +  +P+ FTY  +I+
Sbjct: 185 VARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIH 244

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C      EA+ + N++K +   PD   +  +I  L K G + +A  ++ EM HK + P
Sbjct: 245 GFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFP 304

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY S+I G C+  +LE A  L K+M ++G      +Y  L+  LC  GR + A   F
Sbjct: 305 NIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFF 364

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
           + +  KG   +V TYN +I G CK G
Sbjct: 365 QHLLVKGYHLNVRTYNVMINGLCKAG 390



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/364 (28%), Positives = 165/364 (45%), Gaps = 18/364 (4%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----A 121
           P+F FN+ L     L +       I  F+    + G +PDL + ++L +          A
Sbjct: 60  PTFLFNNIL---SSLVKNKRYPTVISLFKQFEPN-GITPDLCTLSILINCFCHLTHITFA 115

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F V  + L   G+ PN  +L   I+ LC  G I+ A     K+   G      ++ + + 
Sbjct: 116 FSVFANILKR-GYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLIN 174

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K   T  V +L           DL+    +I   C +  + +  +L  +++  G+ P
Sbjct: 175 GLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISP 234

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +  LI  FC   N      LL+ M  +N  PD +T+  +I+ L K  K  EA  +F
Sbjct: 235 NVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLF 294

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            ++K +   P+ V YT++I GLCK   L  A  +  +M  +G+ PN Y+Y  ++   C+ 
Sbjct: 295 EEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKG 354

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             LE AK+  + +L KGY     TYN +I GLC  G   +   L  +M  KG   + IT+
Sbjct: 355 GRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITF 414

Query: 413 NTLI 416
            T+I
Sbjct: 415 KTII 418



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 137/319 (42%), Gaps = 12/319 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P+ ++ N L   L      K A+ F D   + GF  +  S    I  LC++G  +  
Sbjct: 126 GYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAV 185

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                KL+   V   +  + + +    K         LY ++I  G          LI  
Sbjct: 186 ARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHG 245

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + E + LL ++    + P+   FN LI    ++        L   M  +N  P+
Sbjct: 246 FCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPN 305

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+     A  +   +KE+G  P+   YT ++  LCK G L +A++ + 
Sbjct: 306 IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPNVYSYTILLDALCKGGRLENAKQFFQ 365

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ KG   N  TYN MI+G C+     +   L  +M  KG     +T+ T+I  L    
Sbjct: 366 HLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKD 425

Query: 389 RTDEAYHLFEEMAQKGIFR 407
             D+A     EM  +G+ +
Sbjct: 426 ENDKAEKFLREMIARGLLK 444



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/206 (31%), Positives = 99/206 (48%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            L +Q   +G+ P+    + LI+ FC   +      +   ++ R   P+  T   +I GL
Sbjct: 82  SLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGL 141

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C   +   A    + +  +G+  D V Y T+I+GLCK G      ++  ++    + P+ 
Sbjct: 142 CFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDL 201

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
             Y ++IH  C+   L +A  L+ EM+ KG      TY TLI G C+ G   EA+ L  E
Sbjct: 202 VMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNE 261

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M  K I  DV T+N LI    KEGKI
Sbjct: 262 MKLKNINPDVYTFNILIDALAKEGKI 287



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 91/194 (46%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FN ++S   + K +  V  L          PD  T   +IN  C       A+ V
Sbjct: 59  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHLTHITFAFSV 118

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F ++ +RGY P+ +   T+I GLC  G +  A     +++ +G   ++ +Y ++I+G C+
Sbjct: 119 FANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGFQLDQVSYGTLINGLCK 178

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               +   RL +++         V Y T+I  LC +    +A  L+ EM  KGI  +V T
Sbjct: 179 AGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFT 238

Query: 412 YNTLIQGYCKEGKI 425
           Y TLI G+C  G +
Sbjct: 239 YTTLIHGFCIMGNL 252


>gi|147803305|emb|CAN75473.1| hypothetical protein VITISV_002797 [Vitis vinifera]
          Length = 1356

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 158/332 (47%), Gaps = 44/332 (13%)

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
           P+  +L I+   + G+I+ A   F  +  +G   S+ T N  L   +K  RT+LVW L+ 
Sbjct: 163 PSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFR 222

Query: 198 DLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           ++ + G          LI   C +G + +   LL+Q+ E+G VP    +N L++ +C+K 
Sbjct: 223 EMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKG 282

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
            +    EL+  M+ +    D  TY   I+ LC + +  +AY +   +++    P+ V Y 
Sbjct: 283 RYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYN 342

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I+G  K G +G A +++ EM    L PN  TYN++I G+C + + EEA RL   M   
Sbjct: 343 TLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 402

Query: 369 GYGETTVTYNTLIAGLCLH-----------------------------------GRTDEA 393
           G     VTY TL+ GLC H                                   G  DEA
Sbjct: 403 GLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEA 462

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             L   M + G+  DVITY++LI G+C+ G I
Sbjct: 463 VQLVGNMYKDGVNPDVITYSSLINGFCRVGNI 494



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 166/339 (48%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +V+ N L +   +   +K A++ +D     G   +  +  ++I  LC +    +A
Sbjct: 263 GFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKA 322

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
           +    K+++  +  +  T+N+ + G +K  +  +  ++++++         +    LI  
Sbjct: 323 YLLLKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGG 382

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G   E   LL  +   GL      +  L++  C+ + F     LL  M   +    
Sbjct: 383 HCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVG 442

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  Y  +I+GLCK+    EA ++  ++ + G  PD + Y+++I+G C++G +  A+++  
Sbjct: 443 HIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIIC 502

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   GL+ N+  Y+++I+ +C+  N+ EA +++  M   G+G    T N L++ LC  G
Sbjct: 503 RMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDG 562

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +  EA      M++ G+  + ITY+ +I GY   G  +N
Sbjct: 563 KLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLN 601



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 150/338 (44%), Gaps = 12/338 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
            G  PD V+ N + DS         A DF  +    G  PN  +  + +    +   +   
Sbjct: 754  GTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRY 813

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +S +   G+F    T++S +LG  K    DL  KL   +I  G          LI  
Sbjct: 814  LSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINK 873

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            +   GK+ + ++L+  +   G+ P+   +N + +   +K  F   + +LH M+     P 
Sbjct: 874  YSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPK 933

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +  Y  +ING+C+      A+++ ++++  G+    V  + ++ GL   G   DA  +  
Sbjct: 934  HAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLD 993

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M+   LLP   T+ +++H +CR   + EA +L   M   G     V YN LI G+C +G
Sbjct: 994  HMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANG 1053

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +  A+ L+EEM  + +  ++ TY  L+        ++
Sbjct: 1054 DSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLI 1091



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 153/372 (41%), Gaps = 47/372 (12%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAF 158
            SP+ V+ N L +  V+     VA    +       SPN  +    I   C  G  EEA 
Sbjct: 334 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 393

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
                ++  G+  +  T+ + L G  K ++ +L  +L   +         I    LI   
Sbjct: 394 RLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGL 453

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C +G + E  +L+  + +DG+ P+   ++ LI+ FC   N     E++  M       + 
Sbjct: 454 CKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNK 513

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
             Y  +I   C+     EA +V+  +   G+  D      ++  LC+ G LG+A K    
Sbjct: 514 IIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCH 573

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC---- 385
           M   GL+PN  TY+ +I+GY  I +   A     +M+  G   +  TY +L+ GLC    
Sbjct: 574 MSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGN 633

Query: 386 ----------LH---------------------GRTDEAYHLFEEMAQKGIFRDVITYNT 414
                     LH                     G   EA  LF++M Q  +  D  TY++
Sbjct: 634 LVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSS 693

Query: 415 LIQGYCKEGKIV 426
           L+ G C++GK V
Sbjct: 694 LLTGLCRKGKAV 705



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 112/226 (49%), Gaps = 7/226 (3%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ + C DGK+ E  + L  +   GLVP +  ++ +I+ +    +          M+   
Sbjct: 554 LVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCG 613

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLG 321
           + P  FTY  ++ GLCK    +EA +  N L    Y+P   D+VMY T++   CK G L 
Sbjct: 614 QHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLH---YIPGAVDSVMYNTLLAETCKSGNLH 670

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTL 380
           +A  ++ +M+   +LP+ YTY+S++ G CR      A  L    + +G      V Y  L
Sbjct: 671 EAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCL 730

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + GL   G    A++ FEEM +KG   D + +N +I    + G+++
Sbjct: 731 VDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 776



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 142/332 (42%), Gaps = 12/332 (3%)

Query: 104  PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
            P+ V    L D L +A   K A  F +     G  P+  +    I      G + +A   
Sbjct: 722  PNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDF 781

Query: 161  FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            FS ++  GV  ++ T+N  L G  K         LY  ++  G          LI     
Sbjct: 782  FSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSK 841

Query: 212  DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             G    G +LL +++ +G + +   FN LI+++ E     +  +L++ M      PD  T
Sbjct: 842  SGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDT 901

Query: 272  YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
            Y  + NGL K     E+  V +++ E G +P    Y T+I+G+C++G +  A K+  EM 
Sbjct: 902  YNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEME 961

Query: 332  HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              G   +E   ++M+ G       E+A  +   ML      T  T+ TL+   C   +  
Sbjct: 962  ALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIA 1021

Query: 392  EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            EA  L   M   G+  DV+ YN LI G C  G
Sbjct: 1022 EALKLKGVMELCGLKLDVVAYNVLIMGMCANG 1053



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 146/339 (43%), Gaps = 14/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G   D+ + NV  D+L      A+A+ + +  +     SPN  +    I    + G I  
Sbjct: 298 GIEADVCTYNVFIDNLCTNHRSAKAY-LLLKKMRKEMISPNEVTYNTLINGFVKEGKIGV 356

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQ 207
           A   F+++ +  +  +  T+N+ + G   +   +   +L   +         +  G L+ 
Sbjct: 357 AAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGLRLNEVTYGTLLN 416

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   K      LL ++  + +V  + A+  LI   C+        +L+  M      P
Sbjct: 417 GLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQLVGNMYKDGVNP 476

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +ING C+      A  +   +   G V + ++Y+T+I+  C+ G + +A K++
Sbjct: 477 DVITYSSLINGFCRVGNIKSAKEIICRMYRSGLVLNKIIYSTLIYNFCQHGNVTEAMKVY 536

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G   + +T N ++   CR   L EA++    M   G    ++TY+ +I G    
Sbjct: 537 AVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSI 596

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G    A+  F++M + G      TY +L++G CK G +V
Sbjct: 597 GDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLV 635



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/338 (23%), Positives = 135/338 (39%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCL---CESGLIEEA 157
           G  P   +   L   L +      A  FL+   + P      +Y   L   C+SG + EA
Sbjct: 613 GQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEA 672

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
              F K+ +  V     T++S L G  +  +      L+   +  G L          + 
Sbjct: 673 VALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVD 732

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G     +    ++++ G  P+  AFN +I     +    + ++   TM      P
Sbjct: 733 GLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCP 792

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++G  K +  L    +++ +   G  PD + + ++I GL K G      K+ 
Sbjct: 793 NLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLL 852

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +G L +++T+N +I+ Y     + +A  L   M   G      TYN +  GL   
Sbjct: 853 GKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKK 912

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               E+  +  EM + G+      Y TLI G C+ G I
Sbjct: 913 SAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDI 950



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 97/215 (45%), Gaps = 16/215 (7%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  PD  + N +F+ L +  AF+   V +  +   G  P        I  +C  G I+ A
Sbjct: 894  GVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGA 953

Query: 158  FCAFSKLKEMGVFGSIKTWNSA----LLGCIKIDRTDLV------WKLYHDLIESGYLIQ 207
            F    +++ +G FGS +   SA    LL C K +   LV       +L   +     L+ 
Sbjct: 954  FKLKDEMEALG-FGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMH 1012

Query: 208  AFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC D K++E  + L+ V+E  GL  +  A+N LI   C   +     EL   M  R+  
Sbjct: 1013 RFCRDAKIAEALK-LKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLC 1071

Query: 267  PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
            P+  TY  +++ +  +   ++  ++  DL+ERG +
Sbjct: 1072 PNITTYAVLVDAISAANNLIQGEKLLTDLQERGLI 1106


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/394 (27%), Positives = 173/394 (43%), Gaps = 53/394 (13%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFS 135
           NVL      + L S Y      G  PD+V+ N L  +L  A   + A+  L+   S   +
Sbjct: 168 NVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVA 227

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    +Q   E G IE A    +K+ E G   +  T N  + G  K+ R +     
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY 287

Query: 196 YHDLIESGY---------LIQAFCNDGKVS-----------EGYE--------------- 220
               I  G+          +   C +G VS           EG++               
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 347

Query: 221 ---------LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
                    ++ Q+++ G +P+ T FN LI   C +       +L   +  +  +PD +T
Sbjct: 348 NGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYT 407

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +IN LCK        R+F ++K  G  PD V Y  +I  LC MG L +A  +  EM 
Sbjct: 408 FNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEME 467

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G   +  TYN++I   C+   +EEA+ +  +M   G   + VT+NTLI GLC   R D
Sbjct: 468 SNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRID 527

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L E+M ++G+    ITYN+++  YCK+G +
Sbjct: 528 DATELIEQMVKEGLQPSNITYNSILTHYCKQGDL 561



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/330 (30%), Positives = 150/330 (45%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF PD V+ N     L +    + A KV MD +   G  P+  +    I CL ++G ++E
Sbjct: 295 GFEPDQVTYNTFVHCLCQNGHVSHALKV-MDLMLQEGHDPDVFTYNTVINCLSKNGELDE 353

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    +++ + G      T+N+ ++     +R +    L  +L   G          LI 
Sbjct: 354 AKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILIN 413

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G    G  L  ++   G  P+   +N LI   C         +LL  M +     
Sbjct: 414 ALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPR 473

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+ LCK  +  EA  VF+ +   G     V + T+I GLCK   + DA ++ 
Sbjct: 474 STVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELI 533

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ +GL P+  TYNS++  YC+  +L++A  + + M   G+    VTY TLI GLC  
Sbjct: 534 EQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKA 593

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           GRT  A  L   M  KGI      YN +IQ
Sbjct: 594 GRTQVALKLLRGMRIKGIRPTPKAYNPVIQ 623



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 144/334 (43%), Gaps = 35/334 (10%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKV---AMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G   D    N L + L E    K+     + +   G  P+  +L   I+ LC +  +  
Sbjct: 154 FGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRT 213

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     ++    V     T+ +                          L+Q F  +G + 
Sbjct: 214 AVLMLEEMSSHAVAPDETTFTT--------------------------LMQGFIEEGSIE 247

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVARNRAPDNFTYE 273
               +  +++E G  P     N LI+ +C+    GRV + L      +A    PD  TY 
Sbjct: 248 AALRVKTKMMETGCSPTRVTVNVLINGYCK---MGRVEDALGYIQKEIADGFEPDQVTYN 304

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
             ++ LC++     A +V + + + G+ PD   Y TVI+ L K G L +A+ +  +M+ +
Sbjct: 305 TFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDR 364

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G LP+  T+N++I   C  + LEEA  L +E+  KG      T+N LI  LC  G     
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 424

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             LFEEM   G   D +TYN LI   C  GK+VN
Sbjct: 425 IRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVN 458



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 153/338 (45%), Gaps = 33/338 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY--- 144
           L IR F+ + S  G +PD V+ N+L D L        A+D L     +  P S   Y   
Sbjct: 423 LGIRLFEEMKSS-GCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTYNTI 481

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+   IEEA   F ++   G+  S  T+N+                          
Sbjct: 482 IDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNT-------------------------- 515

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C   ++ +  EL+ Q++++GL P N  +N +++ +C++ +  + +++L TM A  
Sbjct: 516 LIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANG 575

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK+ +   A ++   ++ +G  P    Y  VI  L +   L DA 
Sbjct: 576 FEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDAL 635

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++ EM   G  P+  TY  +  G CR    ++EA     EM++KG+     ++  L  G
Sbjct: 636 SLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEG 695

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           L   G  D      E + +K  FR+  +  + I+GY K
Sbjct: 696 LLNLGMDDYLISAIELIIEKAKFRE--SDVSAIRGYLK 731



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 139/342 (40%), Gaps = 25/342 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N L  +L      + A+D    L   G SP+  +  + I  LC+ G     
Sbjct: 365 GCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLG 424

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------------IES 202
              F ++K  G      T+N      I ID    + KL + L               +  
Sbjct: 425 IRLFEEMKSSGCAPDEVTYN------ILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTY 478

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I A C   ++ E  E+  Q+   G+      FN LI   C+ K     +EL+  MV 
Sbjct: 479 NTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVK 538

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               P N TY  ++   CK     +A  +   +   G+  D V Y T+I+GLCK G    
Sbjct: 539 EGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQV 598

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A K+   M  KG+ P    YN +I    R +NL +A  L +EM + G     +TY  +  
Sbjct: 599 ALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVGEPPDALTYKIVFR 658

Query: 383 GLCLHG-RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           GLC  G    EA+    EM  KG   +  ++  L +G    G
Sbjct: 659 GLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLG 700



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 144/335 (42%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N + + L +      A   ++     G  P+  +    I  LC    +EEA
Sbjct: 330 GHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEA 389

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                +L   G+   + T+N  +    K+    L  +L+ ++  SG          LI  
Sbjct: 390 LDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDH 449

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ GK+    +LL+++  +G       +N +I   C++       E+   M A   +  
Sbjct: 450 LCSMGKLVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRS 509

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+GLCK+++  +A  +   + + G  P  + Y +++   CK G L  A  +  
Sbjct: 510 AVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILE 569

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G   +  TY ++I+G C+    + A +L + M  KG   T   YN +I  L    
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 629

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              +A  LF EM + G   D +TY  + +G C+ G
Sbjct: 630 NLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGG 664



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 91/227 (40%), Gaps = 10/227 (4%)

Query: 205 LIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           L+ A           ++L   L  +   P    + ++I +      F    +L+  +V  
Sbjct: 59  LLTALREQADPEAALQMLNSALAREDFAPSRAVYEEIIQKLGTAGAF----DLMEGLVRE 114

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYR-----VFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            R   +     V+    +S  RL  +      V N L   G   DT +Y  +++ L +  
Sbjct: 115 MRREGHEAGAGVVRSFVESYARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGS 174

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +     ++ EM  +G+ P+  T N++I   CR   +  A  + +EM          T+ 
Sbjct: 175 RMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFT 234

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TL+ G    G  + A  +  +M + G     +T N LI GYCK G++
Sbjct: 235 TLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRV 281


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 169/355 (47%), Gaps = 12/355 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPN 139
           Q  V  ++R  + L   +G  PD+VS N +   L  AR +    D ++   + G  PN  
Sbjct: 194 QGPVDEAVRLLRDLLPSFGCEPDVVSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIV 253

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV------- 192
           +    I  LC +GL E      +++ E G    ++ + + + G  K +R ++        
Sbjct: 254 TFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRM 313

Query: 193 --WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
             + L  +++    L++  C+  +  E   LL ++ +     ++  FN L+   C+    
Sbjct: 314 PSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLV 373

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            RV E+L  M+     PD  TY  VING CK     EA  +   +   G  P+TV YT V
Sbjct: 374 DRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIV 433

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           + GLC      DA ++  +MI +G  PN  T+N++I+  C+   +E+A  L K+ML  G 
Sbjct: 434 LKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGC 493

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++Y+T+I GL   G TDEA  L   M +KG+  + I Y+++      EG+I
Sbjct: 494 SPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRI 548



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 142/305 (46%), Gaps = 10/305 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---------SALL 181
           S   +PN  +    ++ LC  G I +A      +   G   +   ++         S   
Sbjct: 104 SVPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAACRASGFR 163

Query: 182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKL 240
           G + + R         D+     ++QA C+ G V E   LLR +L   G  P+  ++N +
Sbjct: 164 GAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDVVSYNAV 223

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           +   C  + +G V +L+  MVA    P+  T+  +I  LC++      + V   + E G 
Sbjct: 224 LRGLCMARRWGHVQDLMEEMVAAGCPPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGC 283

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD  MY T+I G+CK   L  AR +   M   GL PN   YN+++ G C  D  EEA+ 
Sbjct: 284 APDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEG 343

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  EM DK      VT+N L+  LC +G  D    + E+M + G   DVITY T+I G+C
Sbjct: 344 LLAEMFDKDCPLDDVTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFC 403

Query: 421 KEGKI 425
           KEG I
Sbjct: 404 KEGLI 408



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 137/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG SP++V  N L   L  A  ++ A   L        P    +  + +  LC++GL++ 
Sbjct: 316 YGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLCQNGLVDR 375

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++ E G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 376 VIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNTVSYTIVLK 435

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+  +  +  EL+ Q+++ G  P    FN LI+  C+K    +  ELL  M+    +P
Sbjct: 436 GLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 495

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+    EA  + N + ++G  P+T++Y+++   L   G +    +M+
Sbjct: 496 DLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQMF 555

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    + A      M+  G      TY  LI GL   
Sbjct: 556 ENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASE 615

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  +  E+  KG  R
Sbjct: 616 GFVKEAQEILTELCSKGALR 635


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 168/339 (49%), Gaps = 12/339 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           + +GFSP++V    L D   +    + A D    +   G   N  +  + I  L ++G+ 
Sbjct: 190 TEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVK 249

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++ F  + K++E GVF ++ T+N  +    K  RT   ++++ ++ E G          L
Sbjct: 250 KQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTL 309

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C + K++E  +++ Q+  DG+ P    +N LI  FC     G+   L   + +R  
Sbjct: 310 IGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGL 369

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +P   TY  +++G C+      A ++  +++ERG  P  V YT +I    +   +  A +
Sbjct: 370 SPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQ 429

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M   GL+P+ +TY+ +IHG+C    + EA RL K M++K      V YNT+I G C
Sbjct: 430 LRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYC 489

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G +  A  L +EM +K +  +V +Y  +I+  CKE K
Sbjct: 490 KEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERK 528



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 159/331 (48%), Gaps = 12/331 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+ S  +L     EA   + + D L      GFSPN       I   C+ G IE+A   F
Sbjct: 162 DVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
            ++ ++G+  + +T+   + G  K       +++Y  + E G          ++   C D
Sbjct: 222 FEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKD 281

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G+  + +++  ++ E G+      +N LI   C +      ++++  M +    P+  TY
Sbjct: 282 GRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITY 341

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G C   K  +A  +  DLK RG  P  V Y  ++ G C+ G    A KM  EM  
Sbjct: 342 NTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEE 401

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +G+ P++ TY  +I  + R DN+E+A +L   M + G      TY+ LI G C+ G+ +E
Sbjct: 402 RGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNE 461

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           A  LF+ M +K    + + YNT+I GYCKEG
Sbjct: 462 ASRLFKSMVEKNCEPNEVIYNTMILGYCKEG 492



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 155/308 (50%), Gaps = 10/308 (3%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           V  N LF + V+ + F++  + +   G  PN  +    +  LC+ G  ++AF  F +++E
Sbjct: 238 VLINGLFKNGVKKQGFEM-YEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRE 296

Query: 167 MGVFGSIKTWNSALLGC---IKIDRTD-LVWKLYHD-----LIESGYLIQAFCNDGKVSE 217
            GV  +I T+N+ + G    +K++  + +V ++  D     LI    LI  FC  GK+ +
Sbjct: 297 RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGK 356

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L R +   GL P    +N L+S FC K +    ++++  M  R   P   TY  +I+
Sbjct: 357 ALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILID 416

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
              +S    +A ++   ++E G VPD   Y+ +IHG C  G + +A +++  M+ K   P
Sbjct: 417 TFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEP 476

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NE  YN+MI GYC+  +   A +L KEM +K       +Y  +I  LC   ++ EA  L 
Sbjct: 477 NEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLV 536

Query: 398 EEMAQKGI 405
           E+M   GI
Sbjct: 537 EKMIDSGI 544



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 121/230 (52%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           K+  D+   G LI+  C  G++ + ++LL ++ E G  P    +  LI   C+K    + 
Sbjct: 158 KVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +L   M       +  TY  +INGL K+  + + + ++  ++E G  P+   Y  V++ 
Sbjct: 218 KDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQ 277

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G   DA +++ EM  +G+  N  TYN++I G CR   L EA ++  +M   G    
Sbjct: 278 LCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPN 337

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +TYNTLI G C  G+  +A  L  ++  +G+   ++TYN L+ G+C++G
Sbjct: 338 LITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKG 387



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 127/286 (44%), Gaps = 12/286 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L + N + + L +    K A    D     G S N  +    I  LC    + EA
Sbjct: 263 GVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEA 322

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++K  G+  ++ T+N+ + G   + +      L  DL   G          L+  
Sbjct: 323 NKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSG 382

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G  S   ++++++ E G+ P    +  LI  F    N  +  +L  +M      PD
Sbjct: 383 FCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPD 442

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G C   +  EA R+F  + E+   P+ V+Y T+I G CK G    A K+  
Sbjct: 443 VHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLK 502

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           EM  K L PN  +Y  MI   C+    +EA+RL ++M+D G   +T
Sbjct: 503 EMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPST 548



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 52/206 (25%), Positives = 88/206 (42%), Gaps = 35/206 (16%)

Query: 254 SELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---------- 302
           S LLH +     +   F  YE +IN   +S+    +   FN++ + G+VP          
Sbjct: 78  SSLLHYLTESETSKTKFRLYEVIINSYVQSQSLNLSISYFNEMVDNGFVPGSNCFNYLLT 137

Query: 303 ------------------------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
                                   D   +  +I G C+ G +  +  +  E+   G  PN
Sbjct: 138 FVVGSSSFNQWWSFFNENKSKVVLDVYSFGILIKGCCEAGEIEKSFDLLIELTEFGFSPN 197

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              Y ++I G C+   +E+AK L  EM   G      TY  LI GL  +G   + + ++E
Sbjct: 198 VVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQGFEMYE 257

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGK 424
           +M + G+F ++ TYN ++   CK+G+
Sbjct: 258 KMQEDGVFPNLYTYNCVMNQLCKDGR 283



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 123/291 (42%), Gaps = 27/291 (9%)

Query: 40  YTEIAKQVCKITRTKPRW-------EQTLLSDIPSFNFNDPLFFREF-LKQQNNVLLSIR 91
           Y  +  Q+CK  RTK  +       E+ +  +I ++N       RE  L + N V+  ++
Sbjct: 271 YNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMK 330

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
                    G +P+L++ N L D          A+     L S G SP+  +  + +   
Sbjct: 331 -------SDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGF 383

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C  G    A     +++E G+  S  T+   +    + D  +   +L   + E G     
Sbjct: 384 CRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDV 443

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI  FC  G+++E   L + ++E    P    +N +I  +C++ +  R  +LL  
Sbjct: 444 HTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKE 503

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
           M  +  AP+  +Y  +I  LCK RK  EA R+   + + G  P T + + +
Sbjct: 504 MEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V++TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++   L  EM  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   ++M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVD 370



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F         P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DDANELFDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     + + + +++  +G  PD + YTT+I G CK G L  A +   +MI + +
Sbjct: 289 IYGLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +E  Y ++I G C+     +A+++ +EML+ G      TY  +I   C  G   +   
Sbjct: 349 RLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +  I T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKFWVPIDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVD 370



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 162/342 (47%), Gaps = 13/342 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---I 145
           +I  ++    H  + P + +C  + + L++ + FK+   F +       P SL  +   +
Sbjct: 91  AIECYRLTREHKFWVP-IDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILM 149

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C+ G I  A   F  + + G+  S+ ++N+ + G I++   D  ++L   ++ SG  
Sbjct: 150 HRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQ 209

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI   C + K+ +  EL  ++L  GLVP    F  LI   C+        E+
Sbjct: 210 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 269

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M++++ +PD  TY  +I GLCK     +A+ + +++  +G  PD + YTT+I G CK
Sbjct: 270 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCK 329

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L  A +    MI + +  +E  Y ++I G C+     +A+++ +EML  G      T
Sbjct: 330 EGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDART 389

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           Y  +I   C  G   +   L +EM + G    V+TYN L+ G
Sbjct: 390 YTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/192 (26%), Positives = 88/192 (45%), Gaps = 10/192 (5%)

Query: 240 LISRFCEKKNFGRVSELLHTMVAR--NRAPDNFTYEEVINGLCKS---RKRLEAYRVFND 294
           LI     +K  G  S +   ++     +  D + +  +I    +S   R  +E YR+  +
Sbjct: 41  LIQVVVSRKGKGSASAVFAAILETRGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTRE 100

Query: 295 LKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
              + +VP DT     V+  L K+ +       + E++  G   + Y +N ++H +C+  
Sbjct: 101 --HKFWVPIDTC--RKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDG 156

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++  A+ +   +   G   + V+YNTL+ G    G  DE + L   M   G+  DV TY+
Sbjct: 157 DIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYS 216

Query: 414 TLIQGYCKEGKI 425
            LI G CKE K+
Sbjct: 217 VLINGLCKESKM 228


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 151/295 (51%), Gaps = 6/295 (2%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  S  + ++C C    +  A   F K+ ++G   ++ T+N+ L G    DR      L+
Sbjct: 115 NAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISEALDLF 174

Query: 197 HDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           H + +        L+   C +G+V E   LL ++LEDGL P    +  ++   C+  +  
Sbjct: 175 HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTV 234

Query: 252 RVSELLHTM-VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               LL  M    +  P+   Y  +I+GL K  +  +A+ +F +++E+   PD V Y  +
Sbjct: 235 SALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCM 294

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I+G C  G   DA ++  EM+ + + P+  T++++I+ + +     EA+ L+ EML +  
Sbjct: 295 INGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSI 354

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +TVTY+++I G C   R D A H+F     KG   D+IT+NTLI GYC+  ++
Sbjct: 355 IPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRV 409



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 158/338 (46%), Gaps = 11/338 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  GF P +V+ N L   L        A+D        PN  +    +  LC  G + EA
Sbjct: 143 TKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM-CKPNVVTFTTLMNGLCREGRVVEA 201

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI----------Q 207
                ++ E G+  +  T+ + + G  K+  T     L   + E  ++I           
Sbjct: 202 VALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIYNTIID 261

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               DG+ S+ + L  ++ E  + P+   +N +I+ FC    +    +LL  M+ R   P
Sbjct: 262 GLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINP 321

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  +IN   K  K  EA  +++++  R  +P TV Y+++I G CK   L  A  M+
Sbjct: 322 DVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMF 381

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           +    KG  P+  T+N++I GYCR   +++  +L  EM + G    T+TY TLI G C  
Sbjct: 382 YLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 441

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + A  L +EM   G+  +V+T NTL+ G C  GK+
Sbjct: 442 GDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKL 479



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 162/345 (46%), Gaps = 23/345 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N + +    +  +  A   L        +P+  +    I    + G   EA   
Sbjct: 286 PDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEEL 345

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           + ++    +  S  T++S + G  K +R D    +++         D+I    LI  +C 
Sbjct: 346 YDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCR 405

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V +G +LL ++ E GLV     +  LI  FC+  +     +LL  M++    P+  T
Sbjct: 406 AKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVT 465

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKER-----------GYVPDTVMYTTVIHGLCKMGWL 320
              +++GLC + K  +A  +F  +++            G  PD   Y  +I GL   G  
Sbjct: 466 CNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKF 525

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A +++ EM H+G++P+  TY+SMI G C+   L+EA ++   M  K +    VT+NTL
Sbjct: 526 LEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTL 585

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C  G  D+   LF EM Q+GI  D ITY TLI G+ K   I
Sbjct: 586 ITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNI 630



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 165/350 (47%), Gaps = 24/350 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H    P++V+   L + L        A+  LD     G  PN  +    +  +C+ G   
Sbjct: 175 HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTV 234

Query: 156 EAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYL 205
            A     K++E+  +  ++  +N+ + G  K  R      L+          D++    +
Sbjct: 235 SALNLLRKMEEVSHIIPNVVIYNTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCM 294

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC  G+ S+  +LL+++LE  + P+   F+ LI+ F ++  F    EL   M+ R+ 
Sbjct: 295 INGFCISGRWSDAEQLLQEMLERKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSI 354

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  +I+G CK  +   A  +F     +G  PD + + T+I G C+   + D  K
Sbjct: 355 IPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIK 414

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM   GL+ N  TY ++IHG+C++ +L  A+ L +EM+  G     VT NTL+ GLC
Sbjct: 415 LLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLC 474

Query: 386 LHGRTDEAYHLFEEMAQK-----------GIFRDVITYNTLIQGYCKEGK 424
            +G+  +A  +F+ M +            G+  DV TYN LI G   EGK
Sbjct: 475 DNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGK 524



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 156/340 (45%), Gaps = 23/340 (6%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+V+ + L ++ V+   F  A +  D        P+  +    I   C+   ++ A 
Sbjct: 319 INPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAE 378

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F      G    I T+N+ + G  +  R D   KL H++ E+G          LI  F
Sbjct: 379 HMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGF 438

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM------VAR 263
           C  G ++   +LL++++  G+ P     N L+   C+        E+   M      +  
Sbjct: 439 CQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDA 498

Query: 264 NRA-----PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           +R      PD  TY  +I GL    K LEA  ++ ++  RG VPDT+ Y+++I GLCK  
Sbjct: 499 SRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQS 558

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L +A +M+  M  K   P+  T+N++I GYC+   +++   L  EM  +G     +TY 
Sbjct: 559 RLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYI 618

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           TLI G       D A  +F+EM   G++ D IT   ++ G
Sbjct: 619 TLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTG 658



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 188/411 (45%), Gaps = 37/411 (9%)

Query: 23  NTQLRNLSIETKESQQLYTEIAKQVCKITR--TKPRWE--QTLLSDIPSFNFN-DPLFFR 77
           ++   NL IE +E ++++ +I    C I       RW   + LL ++     N D + F 
Sbjct: 269 HSDAHNLFIEMQE-KEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERKINPDVVTFS 327

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSP-DLVSCNVLFDSLVEARAFKVAMD------FLD 130
             +   N  +   +FF+    +    P  ++   V + S+++    +  +D      +L 
Sbjct: 328 ALI---NAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLT 384

Query: 131 ST-GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
            T G SP+  +    I   C +  +++      ++ E G+  +  T+ + + G  ++   
Sbjct: 385 PTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDL 444

Query: 190 DLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLE-----------DG 229
           +    L  ++I SG          L+   C++GK+ +  E+ + + +           +G
Sbjct: 445 NAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNG 504

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           + P+   +N LI     +  F    EL   M  R   PD  TY  +I+GLCK  +  EA 
Sbjct: 505 VEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 564

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           ++F+ +  + + PD V + T+I G CK G + D  +++ EM  +G++ +  TY ++I+G+
Sbjct: 565 QMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGF 624

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            ++DN++ A  + +EM+  G    T+T   ++ GL      + A  + E++
Sbjct: 625 RKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDL 675



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 84/190 (44%), Gaps = 6/190 (3%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL S F E K      +L   MV     P    + +++ G+     R +     +   E 
Sbjct: 51  KLQSGFHEIKGLDDAIDLFGYMVRSRPLPSVIDFCKLM-GVVVRMGRPDVVISLHKKMEM 109

Query: 299 GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
             +P +   +T ++   C    L  A   + ++   G  P   T+N+++HG C  D + E
Sbjct: 110 LRMPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFNTLLHGLCVEDRISE 169

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L  +M         VT+ TL+ GLC  GR  EA  L + M + G+  + ITY T++ 
Sbjct: 170 ALDLFHQMCKP----NVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGTIVD 225

Query: 418 GYCKEGKIVN 427
           G CK G  V+
Sbjct: 226 GMCKMGDTVS 235



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 88/219 (40%), Gaps = 23/219 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS--------------TGFSPNPNSLELYIQ 146
           G  P++V+CN L D L +    K A++   +               G  P+  +  + I 
Sbjct: 458 GVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILIC 517

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------- 197
            L   G   EA   + ++   G+     T++S + G  K  R D   +++          
Sbjct: 518 GLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSP 577

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    LI  +C  G V +G EL  ++ + G+V +   +  LI  F +  N     ++ 
Sbjct: 578 DVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIF 637

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M++    PD  T   ++ GL    +   A  +  DL+
Sbjct: 638 QEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQ 676


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 97/295 (32%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P     +     L + G++EEA   FSK+K   VF   ++ N  L    K+ +TD V + 
Sbjct: 58  PGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRF 117

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           + D+I +G          +I   C +G V     L  ++   GLVP+   +N +I  F +
Sbjct: 118 FKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGK 177

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                        M      PD  TY  +IN  CK  K       + ++K  G  P+ V 
Sbjct: 178 VGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVS 237

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T++   CK G +  A K + +M   GL+PNEYTY S+I   C+I NL +A RL  EML
Sbjct: 238 YSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML 297

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             G     VTY  LI GLC   R  EA  LF +M   G+  ++ +YN LI G+ K
Sbjct: 298 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 352



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/371 (27%), Positives = 171/371 (46%), Gaps = 15/371 (4%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE-ARAFK 123
           +P F   D LF    L     +  +I+ F  +     F P   SCN L     +  +   
Sbjct: 57  VPGFGVFDALF--SVLIDLGMLEEAIQCFSKMKRFRVF-PKTRSCNGLLHRFAKLGKTDD 113

Query: 124 VAMDFLDSTGFSPNPN--SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           V   F D  G    P   +  + I C+C+ G +E A   F ++K  G+     T+NS + 
Sbjct: 114 VKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMID 173

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K+ R D     +          D+I    LI  FC  GK+  G E  R++  +GL P
Sbjct: 174 GFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKP 233

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
              +++ L+  FC++    +  +    M      P+ +TY  +I+  CK     +A+R+ 
Sbjct: 234 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 293

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           N++ + G   + V YT +I GLC    + +A +++ +M   G++PN  +YN++IHG+ + 
Sbjct: 294 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 353

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N++ A  L  E+  +G     + Y T I GLC   + + A  +  EM + GI  + + Y
Sbjct: 354 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 413

Query: 413 NTLIQGYCKEG 423
            TL+  Y K G
Sbjct: 414 TTLMDAYFKSG 424



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 155/336 (46%), Gaps = 13/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++ N L +   +     + ++F   +   G  PN  S    +   C+ G++++A   
Sbjct: 198 PDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKF 257

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           +  ++ +G+  +  T+ S +    KI      ++L +++++ G          LI   C+
Sbjct: 258 YVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCD 317

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             ++ E  EL  ++   G++P   ++N LI  F + KN  R  ELL+ +  R   PD   
Sbjct: 318 AERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLL 377

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   I GLC   K   A  V N++KE G   ++++YTT++    K G   +   +  EM 
Sbjct: 378 YGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMK 437

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              +     T+  +I G C+   + +A    ++   D G       +  +I GLC   + 
Sbjct: 438 ELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQV 497

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + A  LFE+M QKG+  D   Y +L+ G  K+G ++
Sbjct: 498 EAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVL 533



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 15/344 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           RFF+ +    G  P + + N++ D + +    + A    +     G  P+  +    I  
Sbjct: 116 RFFKDMIGA-GARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDG 174

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESGY-- 204
             + G +++  C F ++K+M     + T+N AL+ C  K  +  +  + Y ++  +G   
Sbjct: 175 FGKVGRLDDTVCFFEEMKDMCCEPDVITYN-ALINCFCKFGKLPIGLEFYREMKGNGLKP 233

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  L+ AFC +G + +  +    +   GLVP    +  LI   C+  N      L 
Sbjct: 234 NVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLG 293

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M+      +  TY  +I+GLC + +  EA  +F  +   G +P+   Y  +IHG  K 
Sbjct: 294 NEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKA 353

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A ++  E+  +G+ P+   Y + I G C ++ +E AK +  EM + G    ++ Y
Sbjct: 354 KNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIY 413

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            TL+      G   E  HL +EM +  I   V+T+  LI G CK
Sbjct: 414 TTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 102/221 (46%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L     + G + E  +   ++    + P+  + N L+ RF +      V      M+   
Sbjct: 66  LFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDMIGAG 125

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P  FTY  +I+ +CK      A  +F ++K RG VPDTV Y ++I G  K+G L D  
Sbjct: 126 ARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTV 185

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             + EM      P+  TYN++I+ +C+   L      ++EM   G     V+Y+TL+   
Sbjct: 186 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 245

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G   +A   + +M + G+  +  TY +LI   CK G +
Sbjct: 246 CKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNL 286



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 167/365 (45%), Gaps = 21/365 (5%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLD 130
           F +E + QQ     +I+F+  +    G  P+  +   L D+  +    + AF++  + L 
Sbjct: 245 FCKEGMMQQ-----AIKFYVDMR-RVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEML- 297

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
             G   N  +    I  LC++  ++EA   F K+   GV  ++ ++N+ + G +K    D
Sbjct: 298 QVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMD 357

Query: 191 LVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L +         DL+  G  I   C+  K+     ++ ++ E G+   +  +  L+
Sbjct: 358 RALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLM 417

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK-ERGY 300
             + +  N      LL  M   +      T+  +I+GLCK++   +A   FN +  + G 
Sbjct: 418 DAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVDYFNRISNDFGL 477

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
             +  ++T +I GLCK   +  A  ++ +M+ KGL+P+   Y S++ G  +  N+ EA  
Sbjct: 478 QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALA 537

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  +M + G     + Y +L+ GL    +  +A    EEM  +GI  D +   ++++ + 
Sbjct: 538 LRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEGIHPDEVLCISVLKKHY 597

Query: 421 KEGKI 425
           + G I
Sbjct: 598 ELGCI 602



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 114/279 (40%), Gaps = 13/279 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L S N L    V+A+    A++ L+     G  P+      +I  LC    IE A
Sbjct: 335 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAA 394

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++KE G+  +   + + +    K         L  ++ E            LI  
Sbjct: 395 KVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDG 454

Query: 209 FCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            C +  VS+  +   ++  D GL      F  +I   C+       + L   MV +   P
Sbjct: 455 LCKNKLVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVP 514

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +++G  K    LEA  + + + E G   D + YT+++ GL     L  AR   
Sbjct: 515 DRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFL 574

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
            EMI +G+ P+E    S++  +  +  ++EA  L   ++
Sbjct: 575 EEMIGEGIHPDEVLCISVLKKHYELGCIDEAVELQSYLM 613



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 67/125 (53%)

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           VP   ++  +   L  +G L +A + + +M    + P   + N ++H + ++   ++ KR
Sbjct: 57  VPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKR 116

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             K+M+  G   T  TYN +I  +C  G  + A  LFEEM  +G+  D +TYN++I G+ 
Sbjct: 117 FFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFG 176

Query: 421 KEGKI 425
           K G++
Sbjct: 177 KVGRL 181


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 158/348 (45%), Gaps = 14/348 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           + Q L +  G  P+    NVL   LV       A +  D   S G      S    I  +
Sbjct: 104 YLQLLDA--GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGM 161

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C +G ++ A     ++ E GV   + T+ + + G  ++ R +    ++  +   G     
Sbjct: 162 CRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA 221

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI A C  G      EL R++ E G+ P+   +N +++  C  ++    S ++  
Sbjct: 222 VVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVE 281

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M +    PD  TY  +I+G CK  +   A  +  ++   G   D V YT +I GL K G 
Sbjct: 282 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 341

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             DA ++  EM+  GL P+  TY  +I  +CR  +++   RL KEM +KG     VTYN 
Sbjct: 342 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 401

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           ++ G C  G+   A  L   M   G+  D ITYN L+ G+CK GK+ +
Sbjct: 402 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD 449



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 76/137 (55%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA   +  L + G  P+  ++  ++  L ++G L  A+ ++ EM  +G+     ++N+MI
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 158

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G CR  +L+ A+ LH+ M + G      TY  LI GLC  GR ++A  +FE+M  +G+ 
Sbjct: 159 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 218

Query: 407 RDVITYNTLIQGYCKEG 423
            + + +  LI  +CK+G
Sbjct: 219 PNAVVFTILIDAHCKKG 235



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 102/232 (43%), Gaps = 23/232 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N + + L  AR  K A      + S G  P+  +    I   C+   ++ A
Sbjct: 251 GVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMA 310

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 +   GV     T+ + + G  K  R+    ++  +++E+G          +I A
Sbjct: 311 MEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDA 370

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G V  G  LL+++   G  P    +N +++ FC+         LL+ M+    +PD
Sbjct: 371 FCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPD 430

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKE----RGYVPDTVMYTTVIHGLCK 316
           + TY  +++G CK  K         D++E    +G VPD  +YT+++  + K
Sbjct: 431 DITYNILLDGHCKHGK-------VTDIEELKSAKGTVPDLGVYTSIVGEIVK 475



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G L DA  +    + +G+     +   ++    R     EA   + ++LD G       +
Sbjct: 63  GLLPDACTLVLLALRRGIRLEPTSCTGLMS---RFPTAPEACAFYLQLLDAGLPPEAKLF 119

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           N L+  L   G    A ++F+EM  +G+ R V+++NT+I G C+ G +
Sbjct: 120 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDL 167


>gi|357160857|ref|XP_003578899.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Brachypodium distachyon]
          Length = 714

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 111/367 (30%), Positives = 178/367 (48%), Gaps = 21/367 (5%)

Query: 74  LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE---ARAFKVAMDFLD 130
           L  R+F+++   +LL +        + G  P +V+ N L D L +   A A +V  D + 
Sbjct: 310 LLARDFVEKAGALLLEME-------NEGIVPTVVTYNTLIDGLFKTGNAEAAQVKFDEMR 362

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           + G  P+  +    I   C++G +++A C F  LK  G+  ++ T+N  + G  ++   +
Sbjct: 363 AKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILIDGYCRLGDLE 422

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLR----------QVLEDGLVPENTAFNKL 240
              +L  ++ E   L    C    +  G  ++R          ++L  GL P+  A+N  
Sbjct: 423 GARRLKEEMTEEDCLPDV-CTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEPDCFAYNTR 481

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           IS            +L   M+ R  + D  TY  +I+GLCK+    +AY ++  +   G 
Sbjct: 482 ISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSLKDAYVLWMKMVTDGL 541

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
             D V YT +IH  C+ G L +A+ ++  M+  GL P+  TY   IH YCR  NL  A  
Sbjct: 542 RLDCVTYTCLIHAHCERGRLIEAKNIFDGMVASGLSPSVVTYTIFIHTYCRRGNLYLAYG 601

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             ++ML++G     VTYN L+  LC  GRT+ AY  F EM ++G+  +  TY  LI G C
Sbjct: 602 WFRKMLEEGVEPNEVTYNVLMHALCRMGRTESAYQHFHEMLERGLVPNKYTYTLLIDGSC 661

Query: 421 KEGKIVN 427
           KEG  V+
Sbjct: 662 KEGNWVH 668



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 101/353 (28%), Positives = 156/353 (44%), Gaps = 28/353 (7%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNSLELYIQCL 148
           FQ +  H G +P +  CN +   L +A  +     V  D L   G  P+  +    +   
Sbjct: 182 FQEMARH-GVAPFVKECNCVLRVLRDAARWDDMRAVYSDML-QLGVEPSIFTYNTLLDSF 239

Query: 149 CESGLIEEAFCAFSKL--KEMGVFGSIKTWNSALLGCIKIDRTDLVWKL----------- 195
           C++G +++A      +  +  G   +  T+N  + G  +    +   +L           
Sbjct: 240 CKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELEKAAQLVDIMRLSKKAS 299

Query: 196 ---YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
              Y+ LI +G L + F     V +   LL ++  +G+VP    +N LI    +  N   
Sbjct: 300 AFTYNPLI-TGLLARDF-----VEKAGALLLEMENEGIVPTVVTYNTLIDGLFKTGNAEA 353

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
                  M A+   PD  TY  +ING CK+    +A  +F DLK  G  P  + Y  +I 
Sbjct: 354 AQVKFDEMRAKGLLPDLITYNSLINGYCKAGNLKQALCLFGDLKRAGLGPTVLTYNILID 413

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C++G L  AR++  EM  +  LP+  TY  +++G C + NL   +    EML KG   
Sbjct: 414 GYCRLGDLEGARRLKEEMTEEDCLPDVCTYTILMNGSCMVRNLAMVRIFFDEMLSKGLEP 473

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               YNT I+     G    A+ L EEM  +GI  D +TYN LI G CK G +
Sbjct: 474 DCFAYNTRISAELTIGAITNAFQLREEMMLRGISSDTVTYNVLIDGLCKTGSL 526



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 42/186 (22%)

Query: 280 CKSRKRLEA------YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
           C+++K + A         F ++   G  P       V+  L       D R ++ +M+  
Sbjct: 164 CQAQKSVPASCSTQCLSAFQEMARHGVAPFVKECNCVLRVLRDAARWDDMRAVYSDMLQL 223

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIAGLCLHGRTD 391
           G+ P+ +TYN+++  +C+   +++A  L K+M  +  G     VTYN +I GL   G  +
Sbjct: 224 GVEPSIFTYNTLLDSFCKAGRMDQAVALLKDMEARAAGCLPNDVTYNVVINGLARKGELE 283

Query: 392 EAYHLFE----------------------------------EMAQKGIFRDVITYNTLIQ 417
           +A  L +                                  EM  +GI   V+TYNTLI 
Sbjct: 284 KAAQLVDIMRLSKKASAFTYNPLITGLLARDFVEKAGALLLEMENEGIVPTVVTYNTLID 343

Query: 418 GYCKEG 423
           G  K G
Sbjct: 344 GLFKTG 349


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    E G + +A   +   +E        T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLELGFLRDAIDCYRLTREHKFCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A ++F+++ E+G VP++V +TT+I G C
Sbjct: 199 LKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K GW+  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM   G     +
Sbjct: 259 KNGWVDLAMEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVD 370



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 18/326 (5%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  +L  ++LE GLVP +  F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNAL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA---RKMWFEMIH 332
           I GLCK     +A+ + +++   G  PD + YTT+I G CK G L  A   RKM   MI 
Sbjct: 289 IYGLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKM---MIQ 345

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           + +  ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +
Sbjct: 346 ENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTYTMIINEFCKKGDVWK 405

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQG 418
              L +EM + G    V+TYN L+ G
Sbjct: 406 GSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 169/353 (47%), Gaps = 15/353 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD------STGFSPNPNSLE 142
           ++  F  +   +     + S N + + +V+   F  A++F +      S    PN  +  
Sbjct: 115 AVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHPNALTFN 174

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL------- 195
           L I+ +C  GL+++A   F ++          T+++ + G  K +R D    L       
Sbjct: 175 LVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERIDEAVSLLDEMQVE 234

Query: 196 --YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
             + +L+    LI A C  G +    +L+  +   G VP    +N L+   C K    + 
Sbjct: 235 GTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKA 294

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             LL+ MV+    P++ T+  +ING     +  +  RV   L+ RG+  +  +Y+++I G
Sbjct: 295 VSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISG 354

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G    A ++W EM+ KG  PN   Y+++I G CR   L+EA+    EM +KGY   
Sbjct: 355 LCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPN 414

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + TY++L+ G    G + +A  +++EMA      + + Y+ LI G CK+GK +
Sbjct: 415 SFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFM 467



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 14/337 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD  + + L   L +      A+  LD     G  PN  +  + I  LC+ G +  A  
Sbjct: 202 APDNYTYSTLMHGLCKEERIDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAK 261

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFC 210
               +   G   +  T+N+ + G     + +    L + ++ +         G LI  F 
Sbjct: 262 LVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFV 321

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+ S+G  +L  +   G       ++ LIS  C++  F +  EL   MV +   P+  
Sbjct: 322 MQGRASDGTRVLVSLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTI 381

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  +I+GLC+  K  EA    +++K +GY+P++  Y++++ G  + G    A  +W EM
Sbjct: 382 VYSALIDGLCREGKLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEM 441

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
            +   + NE  Y+ +I+G C+     EA  + K+ML +G     V Y+++I G C     
Sbjct: 442 ANNNCIHNEVCYSILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLV 501

Query: 391 DEAYHLFEEMAQKG--IFRDVITYNTLIQGYCKEGKI 425
           ++   LF +M  +G  +  DVITYN L+  +C +  I
Sbjct: 502 EQGLKLFNQMLCQGPVVQPDVITYNILLNAFCIQKSI 538



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 152/395 (38%), Gaps = 70/395 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ NVL  +L +      A   +D+    G  PN  +    +  LC  G +E+A
Sbjct: 235 GTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVHGLCLKGKLEKA 294

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++       +  T+ + + G +   R     ++   L   G+         LI  
Sbjct: 295 VSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGHRGNEYVYSSLISG 354

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK ++  EL ++++  G  P    ++ LI   C +         L  M  +   P+
Sbjct: 355 LCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGYLPN 414

Query: 269 NFTYEEV-----------------------------------INGLCKSRKRLEAYRVFN 293
           +FTY  +                                   INGLCK  K +EA  V+ 
Sbjct: 415 SFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALMVWK 474

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG--LLPNEYTYNSMIHGYCR 351
            +  RG   D V Y+++IHG C    +    K++ +M+ +G  + P+  TYN +++ +C 
Sbjct: 475 QMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNAFCI 534

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVT---------------------YNTLIAGLCLHGRT 390
             ++  A  +   MLD+G     +T                      + L+  L    RT
Sbjct: 535 QKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDGREFLDELVVRLVKRQRT 594

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             A  + E M  K +     T+  ++Q  CK   +
Sbjct: 595 IGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNV 629



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 112/282 (39%), Gaps = 35/282 (12%)

Query: 112 LFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           L   L +   F  AM+    +   G  PN       I  LC  G ++EA    S++K  G
Sbjct: 351 LISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKG 410

Query: 169 VFGSIKTWNSALLGCIKID---RTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGY 219
              +  T++S + G  +     +  LVWK        H+ +    LI   C DGK  E  
Sbjct: 411 YLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEAL 470

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVIN 277
            + +Q+L  G+  +  A++ +I  FC      +  +L + M+ +     PD  TY  ++N
Sbjct: 471 MVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLN 530

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTV---------------------MYTTVIHGLCK 316
             C  +    A  + N + ++G  PD +                         ++  L K
Sbjct: 531 AFCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDGREFLDELVVRLVK 590

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
                 A K+   M+HK LLP   T+  ++   C+  N+ +A
Sbjct: 591 RQRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKA 632


>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 873

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 170/354 (48%), Gaps = 13/354 (3%)

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNS 140
           NN   ++R    +   YG  PD V+ N +  +L +        D L    ++G  PN N+
Sbjct: 225 NNTEEALRLINQM-GEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNT 283

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLV----- 192
             + +   C+   ++EA      +   G+   + T+N+ + G     KID    +     
Sbjct: 284 YNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKME 343

Query: 193 -WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
            +KL  D++    LI            ++L+ ++   G+       N +I  FC +    
Sbjct: 344 SFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKID 403

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
             S ++  MV    +PD FTY  +ING CK+ K  EAY++ +++  +G   DT    T++
Sbjct: 404 EASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLL 463

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           H +C    L DA  +  +   +G + +E TY ++I GY + +  + A +L +EM + G  
Sbjct: 464 HTMCLEKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIV 523

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T +TYNT+I GLCL G+TD+A     E+ +KG+  D  T N +I GYC EG +
Sbjct: 524 ATIITYNTIIRGLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAV 577



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 159/336 (47%), Gaps = 15/336 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAM----DFLDST--GFSPNPNSLELYIQCLCESGLIE 155
           F P+L++CN L ++LV + +    +     F D+   G  PN N+  + I   C     E
Sbjct: 169 FRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHGYCSDNNTE 228

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           EA    +++ E G      T+N+ L    K  +   V  L   +  SG          L+
Sbjct: 229 EALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILV 288

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C    + E  E++  +   G++P+   +N ++   C++        L   M +    
Sbjct: 289 HGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLV 348

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +I+G  + R    A+++  ++K RG   + V +  +I   C  G + +A  +
Sbjct: 349 PDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNV 408

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+  G  P+ +TYN+MI+GYC+   + EA ++  EM  KG    T T NTL+  +CL
Sbjct: 409 MVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCL 468

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             + D+AY L  +  ++G   D +TY TLI GY K+
Sbjct: 469 EKQLDDAYTLTMKARKRGYILDEVTYGTLIMGYFKD 504



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 181/396 (45%), Gaps = 54/396 (13%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTG 133
           R  L Q  ++LL ++       + G  P+  + N+L     + +  K A   ++ +   G
Sbjct: 259 RSQLTQVRDLLLQMK-------NSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKG 311

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             P+  +    ++ LC+ G I+EA     K++   +   + T+N+ + GC +   +D  +
Sbjct: 312 MLPDVWTYNTMVRGLCDEGKIDEAVRLRDKMESFKLVPDVVTYNTLIDGCFEHRGSDAAF 371

Query: 194 KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           KL  ++   G          +I+ FC +GK+ E   ++ +++E G  P+   +N +I+ +
Sbjct: 372 KLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGY 431

Query: 245 CEK----------KNFGR---------VSELLHTMV--------------ARNRA--PDN 269
           C+              GR         ++ LLHTM               AR R    D 
Sbjct: 432 CKAGKMAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDE 491

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I G  K  +   A +++ ++KE G V   + Y T+I GLC  G    A     E
Sbjct: 492 VTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNE 551

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++ KGL+P+E T N +IHGYC    +E+A + H +M++        T N L+ GLC  G 
Sbjct: 552 LLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGM 611

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++   LF     KG   D +TYN +I  +CKE ++
Sbjct: 612 LEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRL 647



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 165/348 (47%), Gaps = 25/348 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GFSPD  + N + +   +A     A+K+ MD +   G   +  +L   +  +C    +++
Sbjct: 416 GFSPDCFTYNTMINGYCKAGKMAEAYKM-MDEMGRKGLKLDTFTLNTLLHTMCLEKQLDD 474

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A+    K ++ G      T+ + ++G  K ++ D   KL+ ++ E+G          +I+
Sbjct: 475 AYTLTMKARKRGYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIR 534

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK  +  + L ++LE GLVP+ +  N +I  +C +    +  +  + MV  +  P
Sbjct: 535 GLCLSGKTDQAVDKLNELLEKGLVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKP 594

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FT   ++ GLC+     +   +FN    +G   DTV Y  +I   CK   L DA  + 
Sbjct: 595 DIFTCNILLRGLCREGMLEKGLTLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLM 654

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-----------YGETTVT 376
            EM  K L P+ YTYN+++ G  +    EEA++L  +  +KG            G + + 
Sbjct: 655 TEMEGKNLEPDRYTYNAIVTGLTKAGRTEEAEKLALKFAEKGQQVKTQDTSPELGTSDMM 714

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           Y+  I+ LC  G+  +A  LF++  QKG+  +  TY  L+ G  K  K
Sbjct: 715 YSEQISSLCTQGKYKDAMKLFQQAEQKGVSLNKYTYIKLMDGLLKRRK 762



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 144/278 (51%), Gaps = 12/278 (4%)

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRT-DLVW--KLYHDLIESGY---------LIQA 208
           F+K+K +    ++ T N+ L   ++ + +  LV+  +++ D ++ G          LI  
Sbjct: 161 FNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNILIHG 220

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C+D    E   L+ Q+ E G  P+N  +N +++  C++    +V +LL  M      P+
Sbjct: 221 YCSDNNTEEALRLINQMGEYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNSGLFPN 280

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G CK +   EA  V   +  +G +PD   Y T++ GLC  G + +A ++  
Sbjct: 281 RNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRD 340

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M    L+P+  TYN++I G       + A +L +EM  +G  E  VT+N +I   C  G
Sbjct: 341 KMESFKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEG 400

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + DEA ++  +M + G   D  TYNT+I GYCK GK+ 
Sbjct: 401 KIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMA 438



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 182/425 (42%), Gaps = 30/425 (7%)

Query: 24  TQLRNLSIETKES-----QQLYTEIAKQVCKITRTKPRWE-------QTLLSDIPSFNFN 71
           TQ+R+L ++ K S     +  Y  +    CK+   K   E       + +L D+ ++N  
Sbjct: 263 TQVRDLLLQMKNSGLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNT- 321

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD- 130
                   L  +  +  ++R    + S +   PD+V+ N L D   E R    A   ++ 
Sbjct: 322 ----MVRGLCDEGKIDEAVRLRDKMES-FKLVPDVVTYNTLIDGCFEHRGSDAAFKLVEE 376

Query: 131 --STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
             + G   N  +  + I+  C  G I+EA     K+ E G      T+N+ + G  K  +
Sbjct: 377 MKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGK 436

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
               +K+  ++   G          L+   C + ++ + Y L  +  + G + +   +  
Sbjct: 437 MAEAYKMMDEMGRKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKRGYILDEVTYGT 496

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI  + + +   R  +L   M          TY  +I GLC S K  +A    N+L E+G
Sbjct: 497 LIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGKTDQAVDKLNELLEKG 556

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            VPD      +IHG C  G +  A +   +M+   L P+ +T N ++ G CR   LE+  
Sbjct: 557 LVPDESTSNIIIHGYCWEGAVEKAFQFHNKMVEHSLKPDIFTCNILLRGLCREGMLEKGL 616

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L    + KG    TVTYN +I+  C   R ++A+ L  EM  K +  D  TYN ++ G 
Sbjct: 617 TLFNTWISKGKPMDTVTYNIIISSFCKERRLEDAFDLMTEMEGKNLEPDRYTYNAIVTGL 676

Query: 420 CKEGK 424
            K G+
Sbjct: 677 TKAGR 681


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 107/358 (29%), Positives = 178/358 (49%), Gaps = 16/358 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           LK+ N V   +  +  L S     P L++ ++L ++  +      A   L +    GF  
Sbjct: 82  LKRYNAV---VSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNILKMGFQI 138

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-DLVW-- 193
           +   L   ++ LC  G + EA     +  + G       + + + G  KI +T D +   
Sbjct: 139 DVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKTRDAIQMF 198

Query: 194 ------KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
                 ++Y +LI    +I   C  G V E   L  +++E+G+  +  ++N +I  FC  
Sbjct: 199 PKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSV 258

Query: 248 KNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             F    +LL  MV R +  PD +T+  +I+GLCK  +  EAY V   + +RG+ PD V 
Sbjct: 259 GRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVS 318

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  +++G C  G +G+A++++ +M+ +  LPN  +Y ++I+GYC++  ++EA  L  EM 
Sbjct: 319 YNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMH 378

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +K     TVTYN L+ GL   GR+   + L E M   G   D+ITYN L+  Y K  K
Sbjct: 379 NKNLVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEK 436



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/261 (34%), Positives = 132/261 (50%), Gaps = 11/261 (4%)

Query: 176 WNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQAFCNDGKVSEGYELLRQV 225
           +N  L   IK+ R + V  LY            LI    LI AF   G++   + LL  +
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L+ G   +      L+   C K        LLH  V R    D   Y  +INGLCK  K 
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKT 191

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            +A ++F  +K+    P+ +MY TVI GLCK G + +A  +  EM+  G+  + Y+YNSM
Sbjct: 192 RDAIQMFPKMKKIRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSM 251

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           IHG+C +   + A +L  EM+ +G     V T+N LI GLC  GR  EAY++   M ++G
Sbjct: 252 IHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRG 311

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
              D+++YN L+ GYC  G +
Sbjct: 312 WKPDIVSYNALMNGYCLSGSV 332



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 10/298 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN       I  LC+ GL++EA    +++ E G+   + ++NS + G   + R     KL
Sbjct: 208 PNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSMIHGFCSVGRFQAAVKL 267

Query: 196 YHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
             +++  G           LI   C  G+VSE Y ++  +++ G  P+  ++N L++ +C
Sbjct: 268 LDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRGWKPDIVSYNALMNGYC 327

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              + G   ++   MV R   P+  +Y  +ING CK R   EA  +  ++  +  VPDTV
Sbjct: 328 LSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTV 387

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  ++ GL K G       +   M   G   +  TYN ++  Y + +  ++A  L + +
Sbjct: 388 TYNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHI 447

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++ G      TYN L+ GLC  GR   A  +F+ ++ KG   ++ TYN +I G CKEG
Sbjct: 448 IEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKGCQPNIRTYNIMIHGLCKEG 505


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 167/344 (48%), Gaps = 25/344 (7%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           F+    + +GF    VS  ++   L   R FK     LD              +Q    S
Sbjct: 49  FYHLSRNEFGFQHSRVSRFLVSHVLARKRRFKDLRLVLDQM------------LQEEVAS 96

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------- 203
            ++ +A     K+KE  +  SI+T+NS L     +  TD++W +Y+D+ +SG        
Sbjct: 97  RMVHDALFVLVKMKEQNLRPSIQTYNSLLYN---LRHTDIMWDVYNDIKDSGTPQSARTS 153

Query: 204 -YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             ++   C   +  +    LRQ       P   +FN ++SR+C+             M+ 
Sbjct: 154 SIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLK 213

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD ++Y  +I+GL  +    EA  + ND++++G  PD V Y  V  G   +G +  
Sbjct: 214 YGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSG 273

Query: 323 ARKMWFEMI-HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           AR++  +M+  +GL P+  TY  +I G+C++ N+EEA RL +++L  G+    + Y+ L+
Sbjct: 274 AREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLL 333

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + LC  G+ DEA  L  EM    +  D++TY+ LI G CK+GK+
Sbjct: 334 SSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKV 377



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 12/332 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEAF 158
             PDLV+ ++L   L +    + A+       F+   PN  +    ++ LCE G++ +A 
Sbjct: 357 LQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDAR 416

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  L    +   +  +N  + G +K+   +   +LY  L +            LI  F
Sbjct: 417 MYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGF 476

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C + KV E   LL  +   GL P    +  L++ +CE+ N  ++ ELL  M  ++  P  
Sbjct: 477 CKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTV 536

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VI GLCK RK  E+ ++  D++ +G  PD + Y T+I   CK   +  A ++  +
Sbjct: 537 VTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDD 596

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+   L P   TYN +I G CR  ++E+A R+   + D+    T V Y T+I   C+ G 
Sbjct: 597 MLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKGD 656

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              A  +F +M +KG    +  Y+ +I   CK
Sbjct: 657 AQRAVKVFHQMVEKGFEVSIKDYSAVINRLCK 688



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 166/338 (49%), Gaps = 15/338 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           F+P +VS N +     +     VA  F   +   G  P+  S  + I  L  +G +EEA 
Sbjct: 181 FAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEAL 240

Query: 159 CAFSKLKEMGVFGSIKTWNSA-----LLGCIKIDRTDLVWK------LYHDLIESGYLIQ 207
              + +++ G+   + T+        LLG +   R +++ K      L  DL+    LI 
Sbjct: 241 ELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAR-EIIQKMLTDEGLKPDLVTYTVLIC 299

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + E   L R +L  G       ++ L+S  C++       +LL+ M A N  P
Sbjct: 300 GHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQP 359

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+GLCK  K  +A +++ ++      P++  ++ ++ GLC+ G L DAR  +
Sbjct: 360 DLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYF 419

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +I   L P+   YN MI GY ++ ++EEA RL+K + DK    + VT+N+LI G C +
Sbjct: 420 DSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKN 479

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  EA  L E +   G+    +TY TL+  YC+EG I
Sbjct: 480 RKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNI 517



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 155/334 (46%), Gaps = 13/334 (3%)

Query: 101 GFSPDLVSCNVLFDSL----VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+V+  ++        + + A ++    L   G  P+  +  + I   C+ G IEE
Sbjct: 250 GLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEE 309

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A      L   G   ++  ++  L    K  + D   +L +         DL+    LI 
Sbjct: 310 ALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIH 369

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GKV +  +L +++  + + P + A + ++   CEK           +++  N  P
Sbjct: 370 GLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRP 429

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I+G  K     EA R++  L+++   P  V + ++I+G CK   + +AR++ 
Sbjct: 430 DVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLL 489

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +   GL P+  TY ++++ YC   N+ +   L  EM  K    T VTY  +I GLC  
Sbjct: 490 ESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQ 549

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            + +E+  L E+M  KG+  D ITYNT+IQ +CK
Sbjct: 550 RKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCK 583



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 165/339 (48%), Gaps = 13/339 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  PD  S N+L   L+ A + + A++    ++  G  P+  + ++  +     GL+  
Sbjct: 214 YGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSG 273

Query: 157 AFCAFSK-LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           A     K L + G+   + T+   + G  ++   +   +L  DL+ SG+         L+
Sbjct: 274 AREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLL 333

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C  G+V E  +LL ++  + L P+   ++ LI   C++    +  +L   M      
Sbjct: 334 SSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIF 393

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P++F +  ++ GLC+     +A   F+ L      PD  +Y  +I G  K+G + +A ++
Sbjct: 394 PNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRL 453

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  +  K + P+  T+NS+I+G+C+   + EA+RL + +   G   + VTY TL+   C 
Sbjct: 454 YKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCE 513

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  ++ + L  EM  K I   V+TY  +I+G CK+ K+
Sbjct: 514 EGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKL 552



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 157/348 (45%), Gaps = 16/348 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
             Q + +  G  PDLV+  VL     +      A ++  D L S+GF  N     + +  
Sbjct: 277 IIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLL-SSGFQLNVILYSVLLSS 335

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-------- 199
           LC+ G ++EA     +++   +   + T++  + G  K  +     +LY ++        
Sbjct: 336 LCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPN 395

Query: 200 --IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
               SG +++  C  G +S+       ++   L P+ T +N +I  + +  +      L 
Sbjct: 396 SFAHSG-ILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLY 454

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             +  +   P   T+  +I G CK+RK +EA R+   +K  G  P  V YTT+++  C+ 
Sbjct: 455 KRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEE 514

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +    ++  EM  K + P   TY  +I G C+   LEE+ +L ++M  KG     +TY
Sbjct: 515 GNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITY 574

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NT+I   C      +A+ L ++M    +     TYN LI G C+ G +
Sbjct: 575 NTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDV 622



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 163/354 (46%), Gaps = 13/354 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNP 138
           Q  N+  ++R  + L S  GF  +++  +VL  SL +      A+  L   ++    P+ 
Sbjct: 303 QMGNIEEALRLRRDLLSS-GFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDL 361

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTD------- 190
            +  + I  LC+ G +++A   + ++    +F +    +  L G C K   +D       
Sbjct: 362 VTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDS 421

Query: 191 -LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
            ++  L  D+     +I  +   G V E   L +++ +  + P    FN LI  FC+ + 
Sbjct: 422 LIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRK 481

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                 LL ++      P   TY  ++N  C+     + + +  ++  +   P  V YT 
Sbjct: 482 VVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTV 541

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           VI GLCK   L ++ ++  +M  KGL P++ TYN++I  +C+  ++ +A  L  +ML   
Sbjct: 542 VIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHN 601

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              T  TYN LI GLC +G  ++A  +   +  + I    + Y T+I+ +C +G
Sbjct: 602 LEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTTMIKAHCVKG 655



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 178/398 (44%), Gaps = 28/398 (7%)

Query: 57  WEQTLLSDIPSFNFNDPLFFREFLKQQN---------NVLLSIRFFQWLHSHY------G 101
            +Q L  ++ S   +D LF    +K+QN         ++L ++R    +   Y      G
Sbjct: 86  LDQMLQEEVASRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSG 145

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAF 158
                 + +++ D L     F+ A+ FL   D   F+P+  S    +   C+ GL + A 
Sbjct: 146 TPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAK 205

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  + + G+     ++N  + G I     +   +L +D+ + G          + + F
Sbjct: 206 SFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGF 265

Query: 210 CNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              G +S   E+++++L D GL P+   +  LI   C+  N      L   +++     +
Sbjct: 266 HLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLN 325

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +++ LCK  +  EA ++  +++     PD V Y+ +IHGLCK G +  A +++ 
Sbjct: 326 VILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYK 385

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    + PN + ++ ++ G C    L +A+     ++          YN +I G    G
Sbjct: 386 EMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLG 445

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +EA  L++ +  K I   ++T+N+LI G+CK  K+V
Sbjct: 446 DVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVV 483



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/362 (24%), Positives = 146/362 (40%), Gaps = 51/362 (14%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           R F    +H G    L    +L D+       ++  D L  +   P+     + I    +
Sbjct: 391 RIFPNSFAHSGILKGLCEKGMLSDA-------RMYFDSLIMSNLRPDVTLYNIMIDGYVK 443

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
            G +EEA   + +L++  +  SI T+NS + G  K  +     +L   +   G       
Sbjct: 444 LGDVEEAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVT 503

Query: 205 ---LIQAFCNDGKVSEGYELLR-------------------------------QVLED-- 228
              L+ A+C +G +++ +ELL                                Q+LED  
Sbjct: 504 YTTLMNAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMR 563

Query: 229 --GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             GL P+   +N +I  FC+ K+  +  ELL  M+  N  P   TY  +I+GLC+     
Sbjct: 564 AKGLAPDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVE 623

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A RV   L++R      V YTT+I   C  G    A K++ +M+ KG   +   Y+++I
Sbjct: 624 DADRVLVSLQDRNINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVI 683

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           +  C+   + EAK     ML  G       +  ++      G     + L   M + G+ 
Sbjct: 684 NRLCKRCLINEAKYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLL 743

Query: 407 RD 408
            D
Sbjct: 744 HD 745


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 176/384 (45%), Gaps = 47/384 (12%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +++ ++ L    G SP+L +  V+ D L +   FK A +    + +     +  +  + I
Sbjct: 247 AMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILI 306

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC SG ++ A   +S + + G+   +  +NS + G  ++ RT   WK +     SG  
Sbjct: 307 HGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIR 366

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSEL 256
                  + +   + G VSE  ELL+Q+  D    P+   F  LI   CE     R  E+
Sbjct: 367 QITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEI 426

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L          D F+Y  +IN  CK  +  +A  V+ ++ + G  P++ +Y  +I+G C+
Sbjct: 427 LEDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCR 486

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +  + DA K++ EM   G  P   TYN++I G C+ +  +EA  L KEML++G+     T
Sbjct: 487 VSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRT 546

Query: 377 Y-----------------------------------NTLIAGLCLHGRTDEAYHLFEEMA 401
           Y                                   N LI GLC  G+ DEA+ ++ EM 
Sbjct: 547 YASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMK 606

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           +K    +++TYNTL+ G+ + G I
Sbjct: 607 EKNCSPNLVTYNTLMDGFYEIGSI 630



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 157/323 (48%), Gaps = 9/323 (2%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           L DS + + A ++     +    SP+  +    I  LCE+G    AF      +  G   
Sbjct: 378 LLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEEL 437

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELL 222
            + +++S +    K  RT    ++Y ++++ G          LI  FC   K+++  ++ 
Sbjct: 438 DVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIY 497

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++  +G  P    +N LI   C+ + +   S L   M+ R   PD  TY  +I GLC+ 
Sbjct: 498 IEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRD 557

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           +K   A R+++++ + G   D +++  +IHGLC  G + +A  ++ EM  K   PN  TY
Sbjct: 558 KKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTY 617

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N+++ G+  I ++++A  L   +LD G     VTYNT I GLC   RT E   L  E+  
Sbjct: 618 NTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLA 677

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
            GI   VIT++ L++   K G I
Sbjct: 678 TGIMPTVITWSILVRAVIKYGPI 700



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 158/333 (47%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP--NPNSLELYIQCLCESGLIEEAF 158
           G   D+   N L     E      A  F DSTGFS      +  +  + L +SG++ EA 
Sbjct: 329 GLVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEAT 388

Query: 159 CAFSKLKEMGVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +L+        K T+ + + G  +    +  +++  D   SG          +I  
Sbjct: 389 ELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINR 448

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC DG+  +  E+ + +++DG  P +  +N LI+ FC         ++   M +    P 
Sbjct: 449 FCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPT 508

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+ K  EA  +  ++ ERG+ PD   Y ++I GLC+   +  A ++W 
Sbjct: 509 IITYNTLIDGLCKAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWD 568

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E++  GL  +   +N +IHG C    ++EA  ++ EM +K      VTYNTL+ G    G
Sbjct: 569 EILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIG 628

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             D+A  L+  +   G+  D++TYNT I+G C 
Sbjct: 629 SIDKAASLWTAILDNGLKPDIVTYNTRIKGLCS 661



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 164/354 (46%), Gaps = 19/354 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-------FSPNPNSL 141
           ++  F+ L S  G +P + S N L D+ V AR +  A  F  S          +PN  + 
Sbjct: 102 ALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTY 161

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + ++ LC  G ++ A   FS L+  GV     T+++ + G  K D+ D    L  ++  
Sbjct: 162 NIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPN 221

Query: 202 SGYLIQAFCND---------GKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFG 251
            G    A C +         G   +  ++  Q++ D G  P    +  ++   C+   F 
Sbjct: 222 YGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFK 281

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              E+   M+A N   D  TY  +I+GLC+S     A RV++D+ + G V D  +Y ++I
Sbjct: 282 EAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLI 341

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKGY 370
            G C++G  G+A K W      G +    TYN M  G      + EA  L K++  D   
Sbjct: 342 KGFCEVGRTGEAWKFWDSTGFSG-IRQITTYNIMTKGLLDSGMVSEATELLKQLENDASC 400

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               VT+ TLI GLC +G  + A+ + E+    G   DV +Y+++I  +CK+G+
Sbjct: 401 SPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSSMINRFCKDGR 454



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 105/222 (47%), Gaps = 2/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++++ C  G V     L   +   G+ P+   ++ L+S   +        +LL  M    
Sbjct: 164 ILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALDLLDEMPNYG 223

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              D   Y  +++G  ++    +A +V+  L ++ G  P+   Y  ++ GLCK+G   +A
Sbjct: 224 VQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPGASPNLATYKVMLDGLCKLGRFKEA 283

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++W  M+      +  TY  +IHG CR  +++ A R++ +M+  G       YN+LI G
Sbjct: 284 GEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAGLVLDVSVYNSLIKG 343

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  GRT EA+  ++     GI R + TYN + +G    G +
Sbjct: 344 FCEVGRTGEAWKFWDSTGFSGI-RQITTYNIMTKGLLDSGMV 384



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV----TYNTLIAGLCLHGR 389
           G  P   ++N+++  + R     +A      +    +G        TYN ++  LC  G 
Sbjct: 114 GCNPGVRSHNTLLDAFVRARRYSDADAFFASLSHGAFGRRIAPNLQTYNIILRSLCARGD 173

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            D A  LF  + ++G+  D +TY+TL+ G  K  ++ N
Sbjct: 174 VDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDN 211


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 175/365 (47%), Gaps = 15/365 (4%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---S 131
           F  + L +  N  L+   ++ + +H    P   S + L +   +A+  ++    +     
Sbjct: 79  FLVDALARSRNYGLAFSVYRRM-THVDVLPSFGSLSALIECFADAQKPQLGFGVVGLVLK 137

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            GF+ N   + + ++ LC +G + EA     ++    V   I ++N+ + G  K  +   
Sbjct: 138 RGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKE 197

Query: 192 VWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
              L  ++  +G          L+   C DG++ E  ELL  + + G   +   +  LIS
Sbjct: 198 AVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLIS 257

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC   N  R  EL   M+ +  + +  TY  +++GLC+  +  EA  V N + E G  P
Sbjct: 258 GFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHP 317

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D V YT +I GLCK G    A  +   M+ KG  P+  TYN ++ G C+   + +A ++ 
Sbjct: 318 DVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKIL 377

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM--AQKGIFRDVITYNTLIQGYC 420
           + M++KG     VTYNTL+ GLC  G+ DEA  LF  M   +  +  +V T+N LI G C
Sbjct: 378 RMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLC 437

Query: 421 KEGKI 425
           KEG++
Sbjct: 438 KEGRL 442



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 14/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D+V    L              +  D     G S N  +    +  LC  G  +EA
Sbjct: 244 GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEA 303

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               + + E G+   + T+   + G  K  R      L + ++E G          L+  
Sbjct: 304 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 363

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-- 266
            C +G V + +++LR ++E G   +   +N L+   C+K       +L ++M        
Sbjct: 364 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 423

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+ FT+  +I GLCK  +  +A ++   + ++G   + V Y  ++ G  K G + +A ++
Sbjct: 424 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 483

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           W +++  G +PN +TY+ +I G+C++  L  AK L  EM   G       YNTL+A LC 
Sbjct: 484 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 543

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G  ++A  LF+EM       D+I++NT+I G  K G
Sbjct: 544 EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 580



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 21/357 (5%)

Query: 81  KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPN 137
           K+ N VL ++       + +G  PD+V+   L D L +      AMD L+     G  P+
Sbjct: 301 KEANTVLNAM-------AEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPS 353

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +  + +  LC+ GL+ +AF     + E G    + T+N+ + G     + D   KL++
Sbjct: 354 NVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFN 413

Query: 198 DLIES-----------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            + ++             LI   C +G++++  ++ R++++ G       +N L+    +
Sbjct: 414 SMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLK 473

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   EL   ++     P++FTY  +I+G CK R    A  +F +++  G  P    
Sbjct: 474 AGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFD 533

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y T++  LCK G L  A+ ++ EM +    P+  ++N+MI G  +  + +  K L  +M+
Sbjct: 534 YNTLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMV 593

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + G     +T++TLI  L   G  DEA    E M   G   D + Y++L++G   +G
Sbjct: 594 EMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKG 650



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 2/222 (0%)

Query: 206 IQAFCN--DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +++ C   + + +E   L    L+  L+P     N L+      +N+G    +   M   
Sbjct: 44  LRSLCQKPNSQFTEAVSLFHSALDFNLLPSWATCNFLVDALARSRNYGLAFSVYRRMTHV 103

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  P   +   +I     ++K    + V   + +RG+  +  +   V+ GLC+ G + +A
Sbjct: 104 DVLPSFGSLSALIECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEA 163

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +  EM  K + P+  +YN++I+G C+   L+EA  L  EM   G    +VT  TL+ G
Sbjct: 164 MGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDG 223

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC  GR DEA  L E M +KG   DV+ Y TLI G+C  G +
Sbjct: 224 LCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNL 265



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 82/204 (40%), Gaps = 12/204 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+  + ++L D   + R   +A      + + G +P        +  LC+ G +E+A
Sbjct: 491 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQA 550

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++        I ++N+ + G +K      V +L   ++E G          LI  
Sbjct: 551 KSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINR 610

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G++ E    L +++  G  P+   ++ L+     K +   +  LLH M A+    D
Sbjct: 611 LSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLD 670

Query: 269 NFTYEEVINGLCKSRKRLEAYRVF 292
                 ++  LC S + ++   + 
Sbjct: 671 RKIVSTILTCLCHSIQEVDVMELL 694


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 158/348 (45%), Gaps = 14/348 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           + Q L +  G  P+    NVL   LV       A +  D   S G      S    I  +
Sbjct: 228 YLQLLDA--GLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGM 285

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C +G ++ A     ++ E GV   + T+ + + G  ++ R +    ++  +   G     
Sbjct: 286 CRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMKPNA 345

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI A C  G      EL R++ E G+ P+   +N +++  C  ++    S ++  
Sbjct: 346 VVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVE 405

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M +    PD  TY  +I+G CK  +   A  +  ++   G   D V YT +I GL K G 
Sbjct: 406 MRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISGLSKAGR 465

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             DA ++  EM+  GL P+  TY  +I  +CR  +++   RL KEM +KG     VTYN 
Sbjct: 466 SADAERVLGEMMEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKGRKPGVVTYNV 525

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           ++ G C  G+   A  L   M   G+  D ITYN L+ G+CK GK+ +
Sbjct: 526 IMNGFCKLGQMKNADMLLNAMINIGVSPDDITYNILLDGHCKHGKVTD 573



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 76/137 (55%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA   +  L + G  P+  ++  ++  L ++G L  A+ ++ EM  +G+     ++N+MI
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G CR  +L+ A+ LH+ M + G      TY  LI GLC  GR ++A  +FE+M  +G+ 
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMCGRGMK 342

Query: 407 RDVITYNTLIQGYCKEG 423
            + + +  LI  +CK+G
Sbjct: 343 PNAVVFTILIDAHCKKG 359



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 102/229 (44%), Gaps = 17/229 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N + + L  AR  K A      + S G  P+  +    I   C+   ++ A
Sbjct: 375 GVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMA 434

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 +   GV     T+ + + G  K  R+    ++  +++E+G          +I A
Sbjct: 435 MEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDA 494

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G V  G  LL+++   G  P    +N +++ FC+         LL+ M+    +PD
Sbjct: 495 FCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPD 554

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCK 316
           + TY  +++G CK  K  +      +LK  +G VPD  +YT+++  + K
Sbjct: 555 DITYNILLDGHCKHGKVTD----IEELKSAKGTVPDLGVYTSIVGEIVK 599



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A   + +++  GL P    +N ++    R+  L  A+ +  EM  +G   T V++NT+I
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMI 282

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +G+C  G  D A  L   M++ G+  DV TY  LIQG C+ G+I
Sbjct: 283 SGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRI 326



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 51/108 (47%), Gaps = 3/108 (2%)

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G L DA  +    + +G+     +   ++    R     EA   + ++LD G       +
Sbjct: 187 GLLPDACTLVLLALRRGIRLEPTSCTGLMS---RFPTAPEACAFYLQLLDAGLPPEAKLF 243

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           N L+  L   G    A ++F+EM  +G+ R V+++NT+I G C+ G +
Sbjct: 244 NVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDL 291


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 12/330 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD+VS + + D        K A+  +D     G  PN  +    I  LC+ G   EA  
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEK 349

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKID--RTDLVW-------KLYHDLIESGYLIQAFC 210
              ++    +      + + + G  K+   RT   W       K+  D I    LIQ F 
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFG 409

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GKV E   L  +++  GL P+   +  LI  +C+         L + MV     P+  
Sbjct: 410 QGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV 469

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GLCK  +   A  + ++++++G   +  +Y ++++G+CK G +  A K+  EM
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G+ P+  TY ++I  YCR+ ++++A +L +EMLD+G   T VT+N L+ G C+ G  
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           ++   L   M +KGI  D ITYNTL++ +C
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 22/366 (6%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV------EARAFKVAMDF 128
           F          + ++I+ F      YG S +  S N++  SL       EA    + MDF
Sbjct: 231 FLSRIANNSEGIEMAIKVF----CEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDF 286

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID- 187
             ST   P+  S    I   C  G +++A      ++  G+  +  T+NS +L   KI  
Sbjct: 287 RSST---PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 188 --------RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                   R  +  K+  D +    LI  F   G V    +   ++L   + P+   +  
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI  F +         L H M++R   PD  TY  +I+  CK+ + + A+ + N++ + G
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG 463

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P+ V Y  +I GLCK G L  A ++  EM  KGL  N   YNSM++G C+  N+E+A 
Sbjct: 464 MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAI 523

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +L KEM   G     +TY T+I   C  G  D+A+ L +EM  +G+   V+T+N L+ G+
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583

Query: 420 CKEGKI 425
           C  G +
Sbjct: 584 CMLGML 589



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 197/446 (44%), Gaps = 73/446 (16%)

Query: 47  VCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDL 106
           V K+ R++P   + L +   +F ++  ++    +K   N++L+  FF W  +     P L
Sbjct: 80  VIKLRRSEP-LHRILKAHESNFRYDHLIWVLMNIKNDYNLVLA--FFDW--ARVRREPSL 134

Query: 107 VSCNVLFDSLVEARAFKVAMD-----FLDS--------TGFS-----------PNPNSLE 142
            +  ++    V +   ++A +     FL+S        T F+           PNP + +
Sbjct: 135 EARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQFTHRLIYTYKYWGPNPIAFD 194

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL-------GCIKIDRTDLVWKL 195
           ++ Q L E G + EA     KL   G+  ++ + N+ L        G     +    + +
Sbjct: 195 IFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGI 254

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             +      +I + C  GKV E + LL Q+      P+  +++ +I  +C      +  +
Sbjct: 255 SWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALK 314

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L+  M  +   P+ +TY  +I  LCK  K  EA +V  ++  +  +PD V+YTT+IHG  
Sbjct: 315 LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFF 374

Query: 316 KMGWLGDARKMWF------------------------------------EMIHKGLLPNE 339
           K+G +  A K WF                                    EMI +GL P+E
Sbjct: 375 KLGHVRTANK-WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TY ++I  YC+   +  A  LH EM+  G     VTY  LI GLC HG  D A  L +E
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M +KG+  +V  YN+++ G CK G I
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNI 519



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 157/336 (46%), Gaps = 10/336 (2%)

Query: 100 YGFSPDLVSCNVLFDSLVE-ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           YG    + SCN     +   +   ++A+      G S N  S  + I  LC  G ++EA 
Sbjct: 219 YGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAH 278

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++        + ++++ + G   +       KL  D+   G          +I   
Sbjct: 279 RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLL 338

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK  E  ++LR+++   ++P+N  +  LI  F +  +    ++    M+++  +PD 
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDY 398

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I G  +  K +E   +F+++  RG  PD V YTT+I   CK G + +A  +  E
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+  G+ PN  TY ++I G C+   L+ A  L  EM  KG       YN+++ G+C  G 
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++A  L +EM   GI  D ITY T+I  YC+ G I
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G  P+  +    I   C++G +  AF   +++ +MG+  +I T+ + + G  K    D
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L  ++ + G          ++   C  G + +  +L++++   G+ P+   +  +I
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             +C   +  +  +LL  M+ R   P   T+  ++NG C      +  R+   + E+G V
Sbjct: 546 DAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIV 605

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD + Y T++   C    +    K++  M ++G+ P+  TYN +I G+C+  NL+EA  L
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +KEM++KGY  T  +YN LI       +  EA  LFEEM   G+  D   YN  +    +
Sbjct: 666 YKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYE 725

Query: 422 EGKI 425
           EG +
Sbjct: 726 EGDV 729



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 180/417 (43%), Gaps = 17/417 (4%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKI--TRTKPRWEQTLLSD 64
           S++ +L +  ++F+        +S +      +YT +     K+   RT  +W   +LS 
Sbjct: 333 SIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSK 392

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----R 120
             S ++       +   Q   V+     F  + S  G  PD V+   L D   +A     
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR-GLKPDEVTYTTLIDVYCKAGEMVN 451

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AF +  + +   G +PN  +    I  LC+ G ++ A     ++++ G+  ++  +NS +
Sbjct: 452 AFSLHNEMV-QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMV 510

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K    +   KL  ++  +G          +I A+C  G + + ++LL+++L+ GL 
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FN L++ FC          LL  M+ +   PD  TY  ++   C         ++
Sbjct: 571 PTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKI 630

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           +  ++ +G  PD+  Y  +I G CK   L +A  ++ EMI KG +P   +YN++I  + +
Sbjct: 631 YKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYK 690

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
                EA+ L +EM   G       YN  +      G  +   +L +E  +K +  +
Sbjct: 691 KRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCLLNE 747


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 160/332 (48%), Gaps = 12/332 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ N +  SL ++   K AM+ LD        P+  +  + I+  C    +  A 
Sbjct: 200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
               ++++ G    + T+N  + G  K  R D   K  +D+  SG          ++++ 
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  +  +LL  +L  G  P    FN LI+  C K   GR  ++L  M      P++
Sbjct: 320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS 379

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +++G CK +K   A      +  RG  PD V Y T++  LCK G + DA ++  +
Sbjct: 380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +  KG  P   TYN++I G  +     +A +L  EM  K     T+TY++L+ GL   G+
Sbjct: 440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA   F E  + GI  + +T+N+++ G CK
Sbjct: 500 VDEAIKFFHEFERMGIRPNAVTFNSIMLGLCK 531



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 174/347 (50%), Gaps = 19/347 (5%)

Query: 93  FQWLHS--HYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           F++L +  ++G  PD++ C  L   F  L + R     ++ L+ +G  P+  +  + I  
Sbjct: 122 FKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISG 181

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL-----GCIK-----IDRTDLVWKLYH 197
            C++G I  A    S L  M V   + T+N+ L      G +K     +DR  L    Y 
Sbjct: 182 YCKAGEINNAL---SVLDRMSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRM-LQRDCYP 237

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D+I    LI+A C D  V    +LL ++ + G  P+   +N L++  C++       + L
Sbjct: 238 DVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFL 297

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M +    P+  T+  ++  +C + + ++A ++  D+  +G+ P  V +  +I+ LC+ 
Sbjct: 298 NDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRK 357

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G LG A  +  +M   G  PN  +YN ++HG+C+   ++ A    + M+ +G     VTY
Sbjct: 358 GLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTY 417

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           NT++  LC  G+ ++A  +  +++ KG    +ITYNT+I G  K GK
Sbjct: 418 NTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGK 464



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 153/332 (46%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++         AM  LD     G +P+  +  + +  +C+ G ++EA   
Sbjct: 237 PDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKF 296

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            + +   G   ++ T N  L       R     KL  D++  G+         LI   C 
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    ++L ++ + G  P + ++N L+  FC++K   R  E L  MV+R   PD  T
Sbjct: 357 KGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT 416

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K  +A  + N L  +G  P  + Y TVI GL K G  G A K+  EM 
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMR 476

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            K L P+  TY+S++ G  R   ++EA +   E    G     VT+N+++ GLC   +TD
Sbjct: 477 AKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTD 536

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A      M  +G   +  +Y  LI+G   EG
Sbjct: 537 RAIDFLVFMINRGCKPNETSYTILIEGLAYEG 568



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 156/323 (48%), Gaps = 20/323 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+ NVL + + +      A+ FL+   S+G  PN  +  + ++ +C +G   +A
Sbjct: 269 GCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDA 328

Query: 158 FCAFSKLKEMGVFGSIKTWN--------SALLGCIKIDRTDLVWKLYH-----DLIESGY 204
               + +   G   S+ T+N          LLG       D++ K+       + +    
Sbjct: 329 EKLLADMLRKGFSPSVVTFNILINFLCRKGLLG----RAIDILEKMPQHGCQPNSLSYNP 384

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  FC + K+    E L +++  G  P+   +N +++  C+        E+L+ + ++ 
Sbjct: 385 LLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKG 444

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P   TY  VI+GL K+ K  +A ++ ++++ +   PDT+ Y++++ GL + G + +A 
Sbjct: 445 CSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAI 504

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K + E    G+ PN  T+NS++ G C+    + A      M+++G      +Y  LI GL
Sbjct: 505 KFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGL 564

Query: 385 CLHGRTDEAYHLFEEMAQKGIFR 407
              G   EA  L  E+  KG+ +
Sbjct: 565 AYEGMAKEALELLNELCNKGLMK 587



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 108/225 (48%), Gaps = 3/225 (1%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           +ES   ++     G++ EG++ L  ++  G VP+      LI  FC      + +++L  
Sbjct: 103 VESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEI 162

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           +      PD  TY  +I+G CK+ +   A  V + +      PD V Y T++  LC  G 
Sbjct: 163 LEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---VSPDVVTYNTILRSLCDSGK 219

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  A ++   M+ +   P+  TY  +I   CR   +  A +L  EM D+G     VTYN 
Sbjct: 220 LKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNV 279

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           L+ G+C  GR DEA     +M   G   +VIT+N +++  C  G+
Sbjct: 280 LVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGR 324



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           E ++   ++   G VPD +  TT+I G C++G    A K+   +   G +P+  TYN MI
Sbjct: 120 EGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMI 179

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GYC+   +  A  +   M         VTYNT++  LC  G+  +A  + + M Q+  +
Sbjct: 180 SGYCKAGEINNALSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCY 236

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DVITY  LI+  C++  +
Sbjct: 237 PDVITYTILIEATCRDSGV 255



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 43/85 (50%)

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N+ +    R   LEE  +  + M+  G     +   TLI G C  G+T +A  + E +  
Sbjct: 106 NNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEG 165

Query: 403 KGIFRDVITYNTLIQGYCKEGKIVN 427
            G   DVITYN +I GYCK G+I N
Sbjct: 166 SGAVPDVITYNVMISGYCKAGEINN 190



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 12/151 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G SP L++ N + D L +A     A+  LD   +    P+  +    +  L   G +
Sbjct: 441 SSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKV 500

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           +EA   F + + MG+  +  T+NS +LG  K  +TD        +I  G          L
Sbjct: 501 DEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTIL 560

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           I+    +G   E  ELL ++   GL+ +++A
Sbjct: 561 IEGLAYEGMAKEALELLNELCNKGLMKKSSA 591


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 180/336 (53%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P+LV+  V+ + L +     +A + L+    +    ++ +Y   I  LC+    ++A
Sbjct: 220 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 279

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F++++  GV  ++ T+ S+L+ C+   +R     +L  D+IE            LI 
Sbjct: 280 LNLFTEMENKGVRPNVITY-SSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALID 338

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK+ E  +L  ++++  + P+   ++ LI+ FC          +   M++++  P
Sbjct: 339 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 398

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +ING CK+++  E   +F ++ +RG V +TV YTT+IHG  +     +A+ ++
Sbjct: 399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  G+ PN  TYN+++ G C+   LE+A  + + +       T  TYN +I G+C  
Sbjct: 459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 518

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+ ++ + LF  ++ KG+  DVI YNT+I G+C++G
Sbjct: 519 GKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKG 554



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 166/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++   L   L    +A      +D +   G  PN  +  + +  LC+ G I+ A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K++   +  ++  +++ +    K    D    L+ ++   G          LI  
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 304

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  + S+   LL  ++E  + P    FN LI  F ++       +L   M+ R+  PD
Sbjct: 305 LCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 364

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C   +  EA  +F  +  +   P+ V Y T+I+G CK   + +  +++ 
Sbjct: 365 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFR 424

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TY ++IHG+ +  + + A+ + K+M+  G     +TYNTL+ GLC +G
Sbjct: 425 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNG 484

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +FE + +  +   + TYN +I+G CK GK+
Sbjct: 485 KLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKV 521



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 155/360 (43%), Gaps = 64/360 (17%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +   N L  ++ + + F + +     +   G S N  +  + I C C    I  A   
Sbjct: 83  PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 142

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ ++G   SI T +S                          L+  +C+  ++S+   
Sbjct: 143 LGKMMKLGYEPSIVTLSS--------------------------LLNGYCHGKRISDAVA 176

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ Q++E G  P+   F  LI              L+  MV R   P+  TY  V+NGLC
Sbjct: 177 LVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLC 236

Query: 281 KS-----------------------------------RKRLEAYRVFNDLKERGYVPDTV 305
           K                                    R   +A  +F +++ +G  P+ +
Sbjct: 237 KRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVI 296

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y+++I  LC      DA ++  +MI + + PN  T+N++I  + +   L EA++L+ EM
Sbjct: 297 TYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +       TY++LI G C+H R DEA H+FE M  K  F +V+TYNTLI G+CK  +I
Sbjct: 357 IKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLINGFCKAKRI 416



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/208 (27%), Positives = 99/208 (47%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K+ +   L   +++   +P    FNKL+S   + K F  V  L   M     + + +TY 
Sbjct: 65  KLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYN 124

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +IN  C+  +   A  +   + + GY P  V  +++++G C    + DA  +  +M+  
Sbjct: 125 ILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEM 184

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  P+  T+ ++IHG    +   EA  L   M+ +G     VTY  ++ GLC  G  D A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 244

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++L  +M    I  +V+ Y+T+I   CK
Sbjct: 245 FNLLNKMEAAKIEANVVIYSTVIDSLCK 272



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 107/252 (42%), Gaps = 12/252 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            +P++V+ N L D+ V+      A    D        P+  +    I   C    ++EA 
Sbjct: 326 INPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAK 385

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +     F ++ T+N+ + G  K  R D   +L+ ++ + G          LI  F
Sbjct: 386 HMFELMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGF 445

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
                      + +Q++ DG+ P    +N L+   C+     +   +   +      P  
Sbjct: 446 FQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTI 505

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +TY  +I G+CK+ K  + + +F  L  +G  PD ++Y T+I G C+ G   +A  ++ +
Sbjct: 506 YTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRK 565

Query: 330 MIHKGLLPNEYT 341
           M   G LP+  T
Sbjct: 566 MREDGPLPDSGT 577


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 172/351 (49%), Gaps = 14/351 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD-----STGFSPNPNSLEL 143
           +I  F  +   +     + S N + + +++   F  A++F +      T  SPN  S  L
Sbjct: 118 AIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNL 177

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-IES 202
            I+ +C+ GL++ A   F ++        + T+ + + G  K DR D    L  ++ IE 
Sbjct: 178 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 237

Query: 203 GY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
            +        LI   C  G +    +L+  +   G VP    +N +I+  C K    +  
Sbjct: 238 CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAV 297

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LL  MVA    P++ TY  +INGL K  + ++   + + L+ERG+  +   Y+T+I GL
Sbjct: 298 SLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 357

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K     +A  +W +M+ KG  PN   Y+++I G CR   L+EAK +  EM++KG     
Sbjct: 358 FKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNA 417

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TY++LI G    G + +A  +++EMA+     + I Y+ LI G C++GK+
Sbjct: 418 FTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 468



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 147/332 (44%), Gaps = 14/332 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V+ NVL + L +          +D+    G  PN  +    I  LC  G +++A
Sbjct: 237 GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 296

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++       +  T+ + + G +K  R+     L   L E G+         LI  
Sbjct: 297 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 356

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              + K  E   L ++++E G  P    ++ LI   C +       E+L  MV +   P+
Sbjct: 357 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 416

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I G  K+    +A RV+ ++ +   VP+ + Y+ +IHGLC+ G L +A  MW 
Sbjct: 417 AFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWT 476

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML--DKGYGETTVTYNTLIAGLCL 386
            M+ +GL P+   Y+SMIHG C   ++E   +L  EML  +       VTYN L+  LC 
Sbjct: 477 HMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCK 536

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                 A  L   M  +G   D+IT N  +  
Sbjct: 537 QNSISHAIDLLNSMLDRGCNPDLITCNIFLNA 568



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 153/360 (42%), Gaps = 35/360 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N + + L        A+  LD   ++   PN  +    I  L + G   + 
Sbjct: 272 GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDG 331

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               S L+E G   +   +++ + G  K ++++    L+  ++E G          LI  
Sbjct: 332 VHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDG 391

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK+ E  E+L +++  G  P    ++ LI  F +  N  +   +   M   N  P+
Sbjct: 392 LCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPN 451

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLC+  K  EA  ++  +  RG  PD V Y+++IHGLC  G +    K++ 
Sbjct: 452 EICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFN 511

Query: 329 EMI--HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL-- 384
           EM+       P+  TYN ++   C+ +++  A  L   MLD+G     +T N  +  L  
Sbjct: 512 EMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALRE 571

Query: 385 -----------------CLHGRTD--EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                             LH R     A  + E M QK +  +  T+  +I   CK  K+
Sbjct: 572 KLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKV 631



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 2/194 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVA--RNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           +FN +++   ++  F R  E     V    N +P+  ++  VI  +CK      A  VF 
Sbjct: 137 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 196

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++  +   PD   Y T++ GLCK   + +A  +  EM  +G  P+  T+N +I+G C+  
Sbjct: 197 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 256

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++    +L   M  KG     VTYNT+I GLCL G+ D+A  L + M       + +TY 
Sbjct: 257 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 316

Query: 414 TLIQGYCKEGKIVN 427
           TLI G  K+G+ V+
Sbjct: 317 TLINGLVKQGRSVD 330


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 171/358 (47%), Gaps = 16/358 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           + +  N  L I  F  +    G   DL S N++ + L     F +A+  +      G+ P
Sbjct: 20  IAKSKNYDLVISLFHHMEV-CGIGHDLYSYNIVINCLCRCSRFVIALSVVGKMMKFGYEP 78

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  ++   I   C+   + +A    SK++EMG    +  +N+ + G  KI   +   +L+
Sbjct: 79  DVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELF 138

Query: 197 H---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
                     D +    L+   C  G+ S+   L+R ++   +VP    F  +I  F ++
Sbjct: 139 DRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKE 198

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
             F    +L   M  R   PD FTY  +INGLC   +  EA ++ + +  +G +PD V Y
Sbjct: 199 GKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTY 258

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            T+I+G CK   + +  K++ EM  +GL+ +  TYN++I GY +    + A+ +   M  
Sbjct: 259 NTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIFSRMDS 318

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +       TY+ L+ GLC++ R ++A  LFE M +  I  D+ TYN +I G CK G +
Sbjct: 319 R---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKIGNV 373



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 164/335 (48%), Gaps = 15/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G+ PD+V+ + L +   +      A+D    ++  GF P+       I   C+ GL+ +
Sbjct: 74  FGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKIGLVND 133

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   F +++  GV     T+NS + G     R     +L  D++    +         I 
Sbjct: 134 AVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTAVID 193

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F  +GK SE  +L  ++    + P+   +N LI+  C         ++L  MV +   P
Sbjct: 194 VFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLP 253

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +ING CKS++  E  ++F ++ +RG V DT+ Y T+I G  + G    A++++
Sbjct: 254 DVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQAGRPDAAQEIF 313

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  +   PN  TY+ +++G C    +E+A  L + M          TYN +I G+C  
Sbjct: 314 SRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYNIVIHGMCKI 370

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G  ++A+ LF  ++ KG+  DV++Y T+I G+C++
Sbjct: 371 GNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRK 405



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 129/263 (49%), Gaps = 9/263 (3%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELL 222
           SI  ++  L    K    DLV  L+H         DL     +I   C   +      ++
Sbjct: 9   SIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALSVV 68

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++++ G  P+    + LI+ FC+        +L+  M      PD   Y  +I+G CK 
Sbjct: 69  GKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSCKI 128

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +A  +F+ ++  G   D V Y +++ GLC  G   DA ++  +M+ + ++PN  T+
Sbjct: 129 GLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITF 188

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
            ++I  + +     EA +L++EM  +       TYN+LI GLC+HGR DEA  + + M  
Sbjct: 189 TAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVT 248

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KG   DV+TYNTLI G+CK  ++
Sbjct: 249 KGCLPDVVTYNTLINGFCKSKRV 271



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 102/194 (52%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           +P    F+K++S+  + KN+  V  L H M       D ++Y  VIN LC+  + + A  
Sbjct: 7   LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSRFVIALS 66

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           V   + + GY PD V  +++I+G C+   + DA  +  +M   G  P+   YN++I G C
Sbjct: 67  VVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYNTIIDGSC 126

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +I  + +A  L   M   G     VTYN+L+AGLC  GR  +A  L  +M  + I  +VI
Sbjct: 127 KIGLVNDAVELFDRMERDGVRADAVTYNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVI 186

Query: 411 TYNTLIQGYCKEGK 424
           T+  +I  + KEGK
Sbjct: 187 TFTAVIDVFVKEGK 200



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 115/243 (47%), Gaps = 12/243 (4%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +    I    + G   EA   + ++    V   + T+NS + G     R D   ++
Sbjct: 183 PNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQM 242

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
                      D++    LI  FC   +V EG +L R++ + GLV +   +N +I  + +
Sbjct: 243 LDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTIIQGYFQ 302

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   E+   M +R   P+  TY  ++ GLC + +  +A  +F ++++     D   
Sbjct: 303 AGRPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITT 359

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  VIHG+CK+G + DA  ++  +  KGL P+  +Y +MI G+CR    +++  L+++M 
Sbjct: 360 YNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQ 419

Query: 367 DKG 369
           + G
Sbjct: 420 EDG 422



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 25/98 (25%), Positives = 45/98 (45%)

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           MI    LP+   ++ ++    +  N +    L   M   G G    +YN +I  LC   R
Sbjct: 1   MIQSRPLPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCSR 60

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              A  +  +M + G   DV+T ++LI G+C+  ++ +
Sbjct: 61  FVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFD 98


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 12/330 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD+VS + + D        K A+  +D     G  PN  +    I  LC+ G   EA  
Sbjct: 290 TPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEK 349

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKID--RTDLVW-------KLYHDLIESGYLIQAFC 210
              ++    +      + + + G  K+   RT   W       K+  D I    LIQ F 
Sbjct: 350 VLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTTLIQGFG 409

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GKV E   L  +++  GL P+   +  LI  +C+         L + MV     P+  
Sbjct: 410 QGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIV 469

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GLCK  +   A  + ++++++G   +  +Y ++++G+CK G +  A K+  EM
Sbjct: 470 TYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEM 529

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G+ P+  TY ++I  YCR+ ++++A +L +EMLD+G   T VT+N L+ G C+ G  
Sbjct: 530 EVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGML 589

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           ++   L   M +KGI  D ITYNTL++ +C
Sbjct: 590 EDGDRLLGWMLEKGIVPDAITYNTLMKQHC 619



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 169/366 (46%), Gaps = 22/366 (6%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV------EARAFKVAMDF 128
           F          + ++I+ F      YG S +  S N++  SL       EA    + MDF
Sbjct: 231 FLSRIANNSEGIEMAIKVF----CEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDF 286

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID- 187
             ST   P+  S    I   C  G +++A      ++  G+  +  T+NS +L   KI  
Sbjct: 287 RSST---PDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 188 --------RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                   R  +  K+  D +    LI  F   G V    +   ++L   + P+   +  
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI  F +         L H M++R   PD  TY  +I+  CK+ + + A+ + N++ + G
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMG 463

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P+ V Y  +I GLCK G L  A ++  EM  KGL  N   YNSM++G C+  N+E+A 
Sbjct: 464 MTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAI 523

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +L KEM   G     +TY T+I   C  G  D+A+ L +EM  +G+   V+T+N L+ G+
Sbjct: 524 KLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGF 583

Query: 420 CKEGKI 425
           C  G +
Sbjct: 584 CMLGML 589



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 119/446 (26%), Positives = 197/446 (44%), Gaps = 73/446 (16%)

Query: 47  VCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDL 106
           V K+ R++P   + L +   +F ++  ++    +K   N++L+  FF W  +     P L
Sbjct: 80  VIKLRRSEP-LHRILKAHESNFRYDHLIWVLMNIKNDYNLVLA--FFDW--ARVRREPSL 134

Query: 107 VSCNVLFDSLVEARAFKVAMD-----FLDS--------TGFS-----------PNPNSLE 142
            +  ++    V +   ++A +     FL+S        T F+           PNP + +
Sbjct: 135 EARCIIIHIAVVSNDLRLAHELVHDYFLNSKLEIGVKMTQFTHRLIYTYKYWGPNPIAFD 194

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL-------GCIKIDRTDLVWKL 195
           ++ Q L E G + EA     KL   G+  ++ + N+ L        G     +    + +
Sbjct: 195 IFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGI 254

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             +      +I + C  GKV E + LL Q+      P+  +++ +I  +C      +  +
Sbjct: 255 SWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALK 314

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L+  M  +   P+ +TY  +I  LCK  K  EA +V  ++  +  +PD V+YTT+IHG  
Sbjct: 315 LMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFF 374

Query: 316 KMGWLGDARKMWF------------------------------------EMIHKGLLPNE 339
           K+G +  A K WF                                    EMI +GL P+E
Sbjct: 375 KLGHVRTANK-WFDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDE 433

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TY ++I  YC+   +  A  LH EM+  G     VTY  LI GLC HG  D A  L +E
Sbjct: 434 VTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDE 493

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M +KG+  +V  YN+++ G CK G I
Sbjct: 494 MRKKGLQLNVCIYNSMVNGICKAGNI 519



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 157/336 (46%), Gaps = 10/336 (2%)

Query: 100 YGFSPDLVSCNVLFDSLVE-ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           YG    + SCN     +   +   ++A+      G S N  S  + I  LC  G ++EA 
Sbjct: 219 YGLVVTVDSCNAFLSRIANNSEGIEMAIKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAH 278

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               ++        + ++++ + G   +       KL  D+   G          +I   
Sbjct: 279 RLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLL 338

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK  E  ++LR+++   ++P+N  +  LI  F +  +    ++    M+++  +PD 
Sbjct: 339 CKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDY 398

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I G  +  K +E   +F+++  RG  PD V YTT+I   CK G + +A  +  E
Sbjct: 399 ITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNE 458

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+  G+ PN  TY ++I G C+   L+ A  L  EM  KG       YN+++ G+C  G 
Sbjct: 459 MVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAGN 518

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++A  L +EM   GI  D ITY T+I  YC+ G I
Sbjct: 519 IEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDI 554



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G  P+  +    I   C++G +  AF   +++ +MG+  +I T+ + + G  K    D
Sbjct: 426 SRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELD 485

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L  ++ + G          ++   C  G + +  +L++++   G+ P+   +  +I
Sbjct: 486 TANELLDEMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVI 545

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             +C   +  +  +LL  M+ R   P   T+  ++NG C      +  R+   + E+G V
Sbjct: 546 DAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIV 605

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD + Y T++   C    +    K++  M ++G+ P+  TYN +I G+C+  NL+EA  L
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +KEM++KGY  T  +YN LI       +  EA  LFEEM   G+  D   YN  +    +
Sbjct: 666 YKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYE 725

Query: 422 EGKI 425
           EG +
Sbjct: 726 EGDV 729



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 181/417 (43%), Gaps = 17/417 (4%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKI--TRTKPRWEQTLLSD 64
           S++ +L +  ++F+        +S +      +YT +     K+   RT  +W   +LS 
Sbjct: 333 SIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSK 392

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----R 120
             S ++       +   Q   V+     F  + S  G  PD V+   L D   +A     
Sbjct: 393 KISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISR-GLKPDEVTYTTLIDVYCKAGEMVN 451

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AF +  + +   G +PN  +    I  LC+ G ++ A     ++++ G+  ++  +NS +
Sbjct: 452 AFSLHNEMV-QMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMV 510

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K    +   KL  ++  +G          +I A+C  G + + ++LL+++L+ GL 
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FN L++ FC          LL  M+ +   PD  TY  ++   C         ++
Sbjct: 571 PTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMNTTTKI 630

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           +  ++ +G  PD+  Y  +I G CK   L +A  ++ EMI KG +P   +YN++I  + +
Sbjct: 631 YKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYK 690

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
              + EA+ L +EM   G       YN  +      G  +   +L +E  +K +  +
Sbjct: 691 KKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVEITLNLCDEAIEKCLLNE 747


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  161 bits (408), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 105/405 (25%), Positives = 185/405 (45%), Gaps = 31/405 (7%)

Query: 35  ESQQLYTEIAKQVC--KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           E   L T ++ ++C  +    +  + + L S + S  FND L                 F
Sbjct: 23  EKGNLVTALSLRICNSRAFSGRSDYRERLRSGLHSIKFNDALTL---------------F 67

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLC 149
                SH    P +V  + L  ++ +   ++  +     L+  G S +  S    I C C
Sbjct: 68  CDMAESHP--LPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFTTLIDCFC 125

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
               +  A     K+ ++G   SI T+ S + G   ++R      L   ++  GY     
Sbjct: 126 RCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVV 185

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I + C  G+V+   ++L+ + + G+ P+   +N LI+R      +G  + +L  M
Sbjct: 186 IYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVSARILSDM 245

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +    +PD  T+  +I+   K  + LEA + +N++ +R   P+ V Y ++I+GLC  G L
Sbjct: 246 MRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLINGLCIHGLL 305

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A+K+   ++ KG  PN  TYN++I+GYC+   +++  ++   M   G    T TYNTL
Sbjct: 306 DEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDGDTFTYNTL 365

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G C  G+   A  +   M   G+  D+ T+N L+ G C  GKI
Sbjct: 366 YQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKI 410



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 148/328 (45%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +V+   L +       F  AM  +D     G+ PN       I  LCE G +  A
Sbjct: 144 GFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTA 203

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 +K+MG+   + T+NS            L+ +L+H               G    
Sbjct: 204 LDVLKHMKKMGIRPDVVTYNS------------LITRLFHS--------------GTWGV 237

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +L  ++  G+ P+   F+ LI  + ++       +  + M+ R+  P+  TY  +IN
Sbjct: 238 SARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSVNPNIVTYNSLIN 297

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC      EA +V N L  +G+ P+ V Y T+I+G CK   + D  K+   M   G+  
Sbjct: 298 GLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDDGMKILCVMSRDGVDG 357

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +TYN++  GYC+      A+++   M+  G      T+N L+ GLC HG+  +A    
Sbjct: 358 DTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLDGLCDHGKIGKALVRL 417

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E++ +      +ITYN +I+G CK  K+
Sbjct: 418 EDLQKSKTVVGIITYNIIIKGLCKADKV 445



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 128/277 (46%), Gaps = 12/277 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L   L  +  + V+   L      G SP+  +    I    + G + EA
Sbjct: 214 GIRPDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEA 273

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              ++++ +  V  +I T+NS + G       D   K+ + L+  G+         LI  
Sbjct: 274 KKQYNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLING 333

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   +V +G ++L  +  DG+  +   +N L   +C+   F    ++L  MV+    PD
Sbjct: 334 YCKAKRVDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPD 393

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +++GLC   K  +A     DL++   V   + Y  +I GLCK   + DA  ++ 
Sbjct: 394 MYTFNILLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFC 453

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +  KG+ P+  TY +M+ G  R     EA  L+++M
Sbjct: 454 SLALKGVSPDVITYITMMIGLRRKRLWREAHELYRKM 490



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/213 (23%), Positives = 96/213 (45%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K ++   L   + E   +P    F++L+    +   +  V  L   +     + D +++ 
Sbjct: 59  KFNDALTLFCDMAESHPLPSIVDFSRLLIAIAKLNKYEAVISLFRHLEMLGISHDLYSFT 118

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+  C+  +   A      + + G+ P  V + ++++G C +    +A  +  +++  
Sbjct: 119 TLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRFYEAMSLVDQIVGL 178

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  PN   YN++I   C    +  A  + K M   G     VTYN+LI  L   G    +
Sbjct: 179 GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSLITRLFHSGTWGVS 238

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +  +M + GI  DVIT++ LI  Y KEG+++
Sbjct: 239 ARILSDMMRMGISPDVITFSALIDVYGKEGQLL 271


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +   + L  ++ + + + V +   + +   G   N  +  + + C C    +  A   
Sbjct: 79  PSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSF 138

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G   SI T+ S L G  + DR      ++  ++  GY         +I   C 
Sbjct: 139 LGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCK 198

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V    +LL ++ +DG+ P+   +N LIS  C    +   + ++  M  R   PD FT
Sbjct: 199 SKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFT 258

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+   K  +  EA   + ++  R   PD V Y+ +I+GLC    L +A +M+  M+
Sbjct: 259 FNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMV 318

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  P+  TY+ +I+GYC+   +E   +L  EM  +G    TVTY  LI G C  G+ +
Sbjct: 319 SKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLN 378

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  +F  M   G+  ++ITYN L+ G C  GKI
Sbjct: 379 VAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKI 412



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 161/339 (47%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   +L +CN+L +         +A+ FL      G  P+  +    +   C    + +A
Sbjct: 111 GIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDA 170

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F ++  MG   ++  +N+ + G  K  + D    L +         D++    LI  
Sbjct: 171 LYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISG 230

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G+ S+   ++  + +  + P+   FN LI    ++       E    M+ R+  PD
Sbjct: 231 LCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPD 290

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I GLC   +  EA  +F  +  +G  PD V Y+ +I+G CK   +    K++ 
Sbjct: 291 IVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFC 350

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G++ N  TY  +I GYCR   L  A+ + + M+  G     +TYN L+ GLC +G
Sbjct: 351 EMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNG 410

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + ++A  +  +M + G+  D++TYN +I+G CK G++ +
Sbjct: 411 KIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVAD 449



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/379 (27%), Positives = 178/379 (46%), Gaps = 14/379 (3%)

Query: 57  WEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL 116
           WEQ  +  IP       +    F +  + + L++ F   +    G  P +V+   L +  
Sbjct: 104 WEQMQMLGIPHNLCTCNILLNCFCRC-SQLSLALSFLGKM-IKLGHEPSIVTFGSLLNGF 161

Query: 117 VEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
                   A+   D     G+ PN       I  LC+S  ++ A    +++++ G+   +
Sbjct: 162 CRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDV 221

Query: 174 KTWNSALLGCIKI----DRTDLVW-----KLYHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
            T+NS + G        D T +V      ++Y D+     LI A   +G+VSE  E   +
Sbjct: 222 VTYNSLISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEE 281

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++   L P+   ++ LI   C         E+   MV++   PD  TY  +ING CKS+K
Sbjct: 282 MIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKK 341

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
                ++F ++ +RG V +TV YT +I G C+ G L  A +++  M+  G+ PN  TYN 
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNV 401

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++HG C    +E+A  +  +M   G     VTYN +I G+C  G   +A+ ++  +  +G
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQG 461

Query: 405 IFRDVITYNTLIQGYCKEG 423
           +  D+ TY T++ G  K+G
Sbjct: 462 LMPDIWTYTTMMLGLYKKG 480



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 142/318 (44%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++V  N + D L +++    A+D L   +  G  P+  +    I  LC SG   +A
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
               S + +  ++  + T+N+ +  C+K  R     + Y          D++    LI  
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYG 300

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  E+   ++  G  P+   ++ LI+ +C+ K      +L   M  R    +
Sbjct: 301 LCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRN 360

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C++ K   A  +F  +   G  P+ + Y  ++HGLC  G +  A  +  
Sbjct: 361 TVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILA 420

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+  +  TYN +I G C+   + +A  ++  +  +G      TY T++ GL   G
Sbjct: 421 DMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKG 480

Query: 389 RTDEAYHLFEEMAQKGIF 406
              EA  LF +M + GI 
Sbjct: 481 LRREADALFRKMKEDGIL 498



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 59/212 (27%), Positives = 104/212 (49%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K+ +  +L   +++   +P    F++L+S   + K +  V  L   M       +  T  
Sbjct: 61  KLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCN 120

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            ++N  C+  +   A      + + G+ P  V + ++++G C+   + DA  M+ +M+  
Sbjct: 121 ILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGM 180

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  PN   YN++I G C+   ++ A  L   M   G G   VTYN+LI+GLC  GR  +A
Sbjct: 181 GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDA 240

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +   M ++ I+ DV T+N LI    KEG++
Sbjct: 241 TRMVSCMTKREIYPDVFTFNALIDACVKEGRV 272



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 12/248 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N L D+ V+      A +F +        P+  +  L I  LC    ++EA   
Sbjct: 254 PDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEEM 313

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  +   G F  + T++  + G  K  + +   KL+ ++ + G          LIQ +C 
Sbjct: 314 FGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVTYTILIQGYCR 373

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK++   E+ R+++  G+ P    +N L+   C+     +   +L  M       D  T
Sbjct: 374 AGKLNVAEEIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVT 433

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I G+CK+ +  +A+ ++  L  +G +PD   YTT++ GL K G   +A  ++ +M 
Sbjct: 434 YNIIIRGMCKAGEVADAWDIYCSLNCQGLMPDIWTYTTMMLGLYKKGLRREADALFRKMK 493

Query: 332 HKGLLPNE 339
             G+LPNE
Sbjct: 494 EDGILPNE 501



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/166 (23%), Positives = 79/166 (47%)

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +R    +   Y E++    +  K  ++  +F  + +   +P    ++ ++  + KM    
Sbjct: 39  SRRAYSNGSDYREMLRNGIRFMKLDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYD 98

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
               +W +M   G+  N  T N +++ +CR   L  A     +M+  G+  + VT+ +L+
Sbjct: 99  VVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLL 158

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            G C   R  +A ++F++M   G   +V+ YNT+I G CK  ++ N
Sbjct: 159 NGFCRGDRVYDALYMFDQMVGMGYKPNVVIYNTIIDGLCKSKQVDN 204


>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
          Length = 700

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 107/366 (29%), Positives = 176/366 (48%), Gaps = 14/366 (3%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-- 129
           +P    + L  Q +   ++RFFQW     G+  +  +   + D L  A+ F      L  
Sbjct: 182 NPDAVVKVLNLQTDAQNALRFFQWADKQEGYDHNTDAYFTMIDILGRAKMFTELQSLLQK 241

Query: 130 -DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV-FGSIKT-WNSALLGCIKI 186
             + G     + L  ++     SG  +E+  AF+ +KEMG   G I T +NS L+  +K 
Sbjct: 242 MQTQGREITRSMLHSFVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKN 301

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            + D+   L+  +I +G          +IQ F    K+ +  +LL  ++++   P+   +
Sbjct: 302 KKLDMAENLFAQMINNGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTY 361

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             +IS  C++K   +   +L  M      P+ +TY  +I GLC  R+  EA  +   +++
Sbjct: 362 TIVISALCKRKMIEQAYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQ 421

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G  P+   YT + HGLCK+  L  A++M+ E + +GL PN  TYN++++GYCR   L E
Sbjct: 422 GGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIE 481

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  + KEM         VTY TLI GL    +  +A  + +EM  KG   +  T N L +
Sbjct: 482 AMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILAR 541

Query: 418 GYCKEG 423
           G  + G
Sbjct: 542 GLARVG 547



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 155/327 (47%), Gaps = 34/327 (10%)

Query: 107 VSCNVL-FDSLVEA----RAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
           VSCN L + S+++        + AM  LD      ++P+  +  + I  LC+  +IE+A+
Sbjct: 319 VSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAY 378

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               K++E G   +I T+N+                          LIQ  C   +  E 
Sbjct: 379 GVLQKMRENGCEPNIYTYNA--------------------------LIQGLCAVRRPEEA 412

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            EL+  + + G+ P    +  L    C+ +   R  E+ +  +AR   P+  TY  ++NG
Sbjct: 413 LELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNG 472

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            C+  + +EA  +  ++ +    PD V YTT+I GL +   L DA +M  EM +KG   N
Sbjct: 473 YCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVN 532

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             T N +  G  R+ N ++A   ++ M D+G+  +   Y   I  L   G  +EA  L  
Sbjct: 533 FDTLNILARGLARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLY 592

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EM  KG   ++ TYNT+I+G+C++G++
Sbjct: 593 EMINKGYSPNLTTYNTMIKGFCRQGRL 619



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 104/224 (46%), Gaps = 2/224 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPE--NTAFNKLISRFCEKKNFGRVSELLHTMVA 262
            + ++   G+  E  E    + E G  P   +TA+N ++    + K       L   M+ 
Sbjct: 257 FVMSYGRSGRFKESLEAFNLMKEMGYEPGLIDTAYNSVLVSLVKNKKLDMAENLFAQMIN 316

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
              + +N TY  +I       K  +A ++ +D+ +  Y PD V YT VI  LCK   +  
Sbjct: 317 NGVSCNNLTYTSMIQCFFLKEKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQ 376

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  +M   G  PN YTYN++I G C +   EEA  L   M   G      TY  L  
Sbjct: 377 AYGVLQKMRENGCEPNIYTYNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTH 436

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           GLC   R D A  +F E   +G+  + +TYNTL+ GYC+  +++
Sbjct: 437 GLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLI 480



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/250 (17%), Positives = 96/250 (38%), Gaps = 12/250 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +  +L   L + R    A +  +   + G  PN  +    +   C    + EA
Sbjct: 423 GVPPNIYTYTILTHGLCKLRRLDRAKEMFNEALARGLKPNRVTYNTLLNGYCRGSRLIEA 482

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ +        T+ + + G ++ ++     +++ ++   GY         L + 
Sbjct: 483 MDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALRMHDEMENKGYDVNFDTLNILARG 542

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G   +     R++ + G     + +   I              LL+ M+ +  +P+
Sbjct: 543 LARVGNHKDASIFYRRMKDRGFAYSASDYYLAIHCLSTAGEMEEAQALLYEMINKGYSPN 602

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C+  +  +A  + N + E G  PDT  Y  +I      G   DA +++ 
Sbjct: 603 LTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFHNQGRTQDADQLYA 662

Query: 329 EMIHKGLLPN 338
             + +G++ N
Sbjct: 663 TALERGVVLN 672


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 120/410 (29%), Positives = 191/410 (46%), Gaps = 31/410 (7%)

Query: 40  YTEIAKQVCKITRTKPRWEQTL-----LSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +  L     L  IP+ F++N      + L  +N    ++   
Sbjct: 125 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYN---ILLKGLCDENRSQEALELL 181

Query: 94  QWLHSHYGFS--PDLVS----CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
             +    G    PD+VS     N  F      +A+    + LD  G  P+  +    I  
Sbjct: 182 HMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDR-GILPDVVTYNSIIAA 240

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL------------LGCIKIDRTDLVWKL 195
           LC++  +++A    + + + GV     T+NS L            +G +K  R+D V   
Sbjct: 241 LCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEP- 299

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D++    L+   C +G+  E  ++   + + GL PE T +  L+  +  K     +  
Sbjct: 300 --DVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 357

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV     PD++ +  +I       K  +A  VF+ ++++G  P+ V Y  VI  LC
Sbjct: 358 LLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILC 417

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + DA   + +MI +GL P    YNS+IHG C  +  E A+ L  EMLD+G    T+
Sbjct: 418 KSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTI 477

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +N++I   C  GR  E+  LFE M + G+  +VITYNTLI GYC  GK+
Sbjct: 478 FFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKM 527



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 140/258 (54%), Gaps = 15/258 (5%)

Query: 183 CIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQVLEDGLVP 232
           C +  R DL +    ++I+ G+         L++  C D + S+  ++ LR++ E G +P
Sbjct: 97  CCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIP 156

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA----PDNFTYEEVINGLCKSRKRLEA 288
              ++N L+   C++       ELLH M+A +R     PD  +Y  VING  K     +A
Sbjct: 157 NVFSYNILLKGLCDENRSQEALELLH-MMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           Y  ++++ +RG +PD V Y ++I  LCK   +  A ++   M+  G++P+  TYNS++HG
Sbjct: 216 YSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 275

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC     +EA    K+M   G     VTY+ L+  LC +GR  EA  +F+ M ++G+  +
Sbjct: 276 YCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPE 335

Query: 409 VITYNTLIQGYCKEGKIV 426
           + TY TL+QGY  +G +V
Sbjct: 336 ITTYGTLLQGYATKGALV 353



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 47/368 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD ++ N +      +   K A+ FL    S G  P+  +  L +  LC++G   EA
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG---------------------------------CI 184
              F  + + G+   I T+ + L G                                 C 
Sbjct: 321 RKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICA 380

Query: 185 -----KIDRTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                K+D+  LV+       L  + +  G +I   C  G+V +      Q++++GL P 
Sbjct: 381 YANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPG 440

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           N  +N LI   C    + R  EL+  M+ R    +   +  +I+  CK  + +E+ ++F 
Sbjct: 441 NIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFE 500

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +   G  P+ + Y T+I+G C  G + +A K+   M+  GL PN  TY+++I+GYC+I 
Sbjct: 501 LMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 560

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +E+A  L KEM   G     +TYN ++ GL    RT  A  L+  + + G   ++ TYN
Sbjct: 561 RMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYN 620

Query: 414 TLIQGYCK 421
            ++ G CK
Sbjct: 621 IILHGLCK 628



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 169/377 (44%), Gaps = 51/377 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D ++   L   L   +    AMD     +   G  PN  S  + ++ LC+    +E
Sbjct: 117 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPNVFSYNILLKGLCDENRSQE 176

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------- 205
           A      + +    GS   + ++ + + G  K   +D  +  YH++++ G L        
Sbjct: 177 ALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNS 236

Query: 206 -IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I A C    + +  E+L  ++++G++P+   +N ++  +C           L  M +  
Sbjct: 237 IIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDG 296

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI------------H 312
             PD  TY  +++ LCK+ + +EA ++F+ + +RG  P+   Y T++            H
Sbjct: 297 VEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMH 356

Query: 313 GLCKM-----------------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           GL  +                       G +  A  ++ +M  +GL PN  TY ++I   
Sbjct: 357 GLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGIL 416

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   +E+A    ++M+D+G     + YN+LI GLC   + + A  L  EM  +GI  + 
Sbjct: 417 CKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNT 476

Query: 410 ITYNTLIQGYCKEGKIV 426
           I +N++I  +CKEG+++
Sbjct: 477 IFFNSIIDSHCKEGRVI 493



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 152/339 (44%), Gaps = 18/339 (5%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P++ +   L        +LVE       +D +   G  P+     + I      G +
Sbjct: 331 GLKPEITTYGTLLQGYATKGALVEMHGL---LDLMVRNGIHPDHYVFSILICAYANQGKV 387

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++A   FSK+++ G+  +  T+ + +    K  R +     +  +I+ G          L
Sbjct: 388 DQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSL 447

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   K     EL+ ++L+ G+      FN +I   C++       +L   MV    
Sbjct: 448 IHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGV 507

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +ING C + K  EA ++ + +   G  P+TV Y+T+I+G CK+  + DA  
Sbjct: 508 KPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALV 567

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM   G+ P+  TYN ++ G  +      AK L+  + + G      TYN ++ GLC
Sbjct: 568 LFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLC 627

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +  TD+A  +F+ +    +  +  T+N +I    K G+
Sbjct: 628 KNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGR 666



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/337 (22%), Positives = 135/337 (40%), Gaps = 44/337 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +PN  +    I  LC+SG +E+A   F ++ + G+      +NS + G    ++ +  
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++++ G          +I + C +G+V E  +L   ++  G+ P    +N LI+ 
Sbjct: 461 EELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLING 520

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C         +LL  MV+    P+  TY  +ING CK  +  +A  +F +++  G  PD
Sbjct: 521 YCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPD 580

Query: 304 TVMYTTVI-----------------------------------HGLCKMGWLGDARKMWF 328
            + Y  ++                                   HGLCK     DA +M+ 
Sbjct: 581 IITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDALQMFQ 640

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +    L     T+N MI    ++   +EAK L       G      TY  +   +   G
Sbjct: 641 NLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQG 700

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +E   LF  M   G   D    N +++   + G+I
Sbjct: 701 LLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEI 737



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/159 (31%), Positives = 83/159 (52%), Gaps = 4/159 (2%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +I   C++ +    +    ++ ++G+  D + +T ++ GLC      DA  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 327 WF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLHKEMLDKGYGE--TTVTYNTLIA 382
               M   G +PN ++YN ++ G C  +  +EA + LH    D+G G     V+Y T+I 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G    G +D+AY  + EM  +GI  DV+TYN++I   CK
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCK 243



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 1/89 (1%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY  +I   CR   L+        ++ KG+    + +  L+ GLC   RT +A  +
Sbjct: 85  PDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDI 144

Query: 397 -FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               M + G   +V +YN L++G C E +
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENR 173



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT---VTYN 378
           DAR ++ E++ +G   + Y  N  +    R D+   A   +  M   G  E T    TY 
Sbjct: 33  DARHVFDELLRRGRGASIYGLNRALADVAR-DSPAAAVSRYNRMARAGADEVTPDLCTYG 91

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            LI   C  GR D  +     + +KG   D I +  L++G C + +
Sbjct: 92  ILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKR 137


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   ++  +E  ++    T    L   +K+    LVW  Y D++E GY
Sbjct: 73  ITAYLESGFLRDAIECYTLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEDILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 163 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 222

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 223 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 283 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 342

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 402

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 403 LLKEMQRNGHAPSVVTYNVLMNG 425



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 87/200 (43%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A D +D     G  P+ 
Sbjct: 253 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 311

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +                 I++D  D+ +     
Sbjct: 312 FTYTTLIDGCCKEGDLDTAFEHRKRMIQEN---------------IRLD--DVAYTA--- 351

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +  + S+LL 
Sbjct: 352 ------LISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLK 405

Query: 259 TMVARNRAPDNFTYEEVING 278
            M     AP   TY  ++NG
Sbjct: 406 EMQRNGHAPSVVTYNVLMNG 425


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 151/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   F   ++   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 73  ITAYLESGFLRDAIECFRLTRKHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN LI+ +    +  +   
Sbjct: 133 PTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +T   +INGLCK  K  EA  +FN++ ++G VP+ V +TT+I G C
Sbjct: 193 LKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ +G  P+  TYN++I+G CR  +L++A+ L  EM  KG     +
Sbjct: 253 KSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+ L + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVD 364


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 147/268 (54%), Gaps = 12/268 (4%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSE 217
           MG   ++ T+N  LL   +  R D    ++ ++I+            L++  C   ++ +
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEK 60

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL ++ E G VP++  +N LIS + + K+FG+  + L  MV  +  P   TY  +++
Sbjct: 61  ARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVD 120

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK+ +  +A ++ ++++++G  P+   Y  ++ GLC+   L +A+KM  EM  +G  P
Sbjct: 121 GLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFP 180

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYNS I G C+ D ++EA++    M         V+Y T+I GLC  G  D A  + 
Sbjct: 181 DVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRML 237

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + M+ +G   DV+TY++LI G+CK G++
Sbjct: 238 DHMSNRGCTPDVVTYSSLIDGFCKGGEV 265



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 171/376 (45%), Gaps = 56/376 (14%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V+   + D L +A   + A+  LD     G SPN  +  + ++ LCE   ++EA   
Sbjct: 110 PTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKM 169

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-------------------------- 194
             ++   G F  + T+NS + G  K DR D   K                          
Sbjct: 170 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGD 229

Query: 195 -------LYH--------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                  L H        D++    LI  FC  G+V     LL  +L+ G  P   A+N 
Sbjct: 230 LDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 289

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           L+       + G+  ++L  M  R   PD  +Y   I+GLCK+ +  +A  VF+ + ERG
Sbjct: 290 LLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG 349

Query: 300 YVP----------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHG 348
             P          D ++YT ++ GLCK G   +A  ++ +++ + +  P+ + YN M+  
Sbjct: 350 CTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDS 409

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C+   +++A ++HK+ML+K      VT+N L+ GLC+  R  +A  +   M  +G   D
Sbjct: 410 HCKRRQIDKALQIHKQMLEKNCC-NVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPD 468

Query: 409 VITYNTLIQGYCKEGK 424
            +TY TL+   CK GK
Sbjct: 469 FVTYGTLVDAMCKCGK 484



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 13/315 (4%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +A  V  + +D +   P+  +  + ++ LC S  +E+A     ++KEMG       +N+ 
Sbjct: 25  KASAVFQEMIDKS-CQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNAL 83

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGL 230
           + G  K       +K   +++++  L         +   C   +  +  +LL ++ + G 
Sbjct: 84  ISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKGC 143

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            P    +N ++   CE++      ++L  M  R   PD  TY   I GLCK   R++  R
Sbjct: 144 SPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKC-DRVDEAR 202

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            F  L      PD V YTTVI+GLCK G L  A +M   M ++G  P+  TY+S+I G+C
Sbjct: 203 KF--LARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFC 260

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +E A  L   ML  G     V YN+L+  L   G   +A  +  EM ++G   DV+
Sbjct: 261 KGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVV 320

Query: 411 TYNTLIQGYCKEGKI 425
           +YN  I G CK  ++
Sbjct: 321 SYNACIDGLCKAERV 335



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/422 (22%), Positives = 164/422 (38%), Gaps = 61/422 (14%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLF----FREFLKQQNNVLLSIRFFQW 95
           YT I   +CK  RT  R    LL ++     +  ++      E L ++  +  + +  + 
Sbjct: 115 YTNIVDGLCKAERT--RDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEE 172

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +    G+ PD+V+ N     L +      A  FL     +P+  S    I  LC+SG ++
Sbjct: 173 MAVR-GYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLD 231

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
            A      +   G    + T++S + G  K    +    L   +++ G          L+
Sbjct: 232 SASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLL 291

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            A    G + +  ++L ++   G  P+  ++N  I   C+ +   +   +   MV R   
Sbjct: 292 GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCT 351

Query: 267 PDNFTYEEVI----------NGLCKSRKRLEAYRVFND-LKERGYVPDTVMYTT------ 309
           P+  +Y  +I          +GLCK  +  EA  +F+  L E+   PD   Y        
Sbjct: 352 PNASSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHC 411

Query: 310 ----------------------------VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
                                       ++HGLC    L DA  M   M+ +G +P+  T
Sbjct: 412 KRRQIDKALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVT 471

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           Y +++   C+      A  L +E +  G     VTY+ LI GL      +EAY LF ++ 
Sbjct: 472 YGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLV 531

Query: 402 QK 403
           ++
Sbjct: 532 ER 533



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 22/225 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI----------QC 147
           GF+PD+VS N   D L +A   K A    D     G +PN +S  + I            
Sbjct: 314 GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDG 373

Query: 148 LCESGLIEEAFCAFSK-LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--- 203
           LC+ G  +EA   FSK L E      +  +N  L    K  + D   +++  ++E     
Sbjct: 374 LCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCN 433

Query: 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+   C D ++S+   +L  ++++G +P+   +  L+   C+        EL  
Sbjct: 434 VVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFE 493

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             V     PD  TY  +I GL       EAY +F  L ER +VPD
Sbjct: 494 EAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPD 538


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 162/339 (47%), Gaps = 20/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ +   + + L    E  A    +  ++  G  PN  +    I    +   + EA
Sbjct: 198 GCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEA 257

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-------------LYHDLIESGY 204
              FS +K  G+   I T+NS + G     +    WK             +  D++    
Sbjct: 258 LDIFSYMKVKGISPDIFTYNSLIQGLCNFSQ----WKEASALLNEMRSLNIMPDIVTFNV 313

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +GKVSE   +L+ + E G+ P+   ++ L+  +  +       +L   M+ + 
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F+Y  +ING CK ++  EA ++FN++  +G  P+ V Y T+IHGLC++G L +AR
Sbjct: 374 CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREAR 433

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M   G LPN +TY+ ++ G+C+     +A RL + M         V YN LI  +
Sbjct: 434 NLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAM 493

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  G   +A  LF E+  KG+  +   Y T+I G CKEG
Sbjct: 494 CKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEG 532



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 163/339 (48%), Gaps = 44/339 (12%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           ++  G SPN  +L + I C      ++ AF   +K+ ++G+  +I T+ + +    K+ +
Sbjct: 124 MELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGK 183

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLE------------ 227
                +L+ D++  G          +I   C  G+ +    LL+++ E            
Sbjct: 184 FAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYST 243

Query: 228 -----------------------DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
                                   G+ P+   +N LI   C    +   S LL+ M + N
Sbjct: 244 IIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLN 303

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +++ +CK  K  EA  V   + E G  PD V Y+++++G      + +AR
Sbjct: 304 IMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEAR 363

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++  MI KG  P+ ++YN +I+GYC++  ++EAK+L  EM+ +G     V+YNTLI GL
Sbjct: 364 KLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGL 423

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  G   EA +LF+ M   G   ++ TY+ L+ G+CK+G
Sbjct: 424 CQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQG 462



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 159/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+   L + L +   F  AM+  D   + G  P+  +    I  LC+ G    A
Sbjct: 163 GLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAA 222

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K++E G   ++ T+++ +    K  R +    ++          D+     LIQ 
Sbjct: 223 AGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQG 282

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  +  E   LL ++    ++P+   FN L+   C++        +L TM      PD
Sbjct: 283 LCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMTEMGVEPD 342

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G     + +EA ++F+ +  +G  PD   Y  +I+G CK+  + +A++++ 
Sbjct: 343 VVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAKQLFN 402

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMIH+GL PN  +YN++IHG C++ +L EA+ L K M   G      TY+ L+ G C  G
Sbjct: 403 EMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQG 462

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A+ LF  M       +++ YN LI   CK G +
Sbjct: 463 YFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNL 499



 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 148/323 (45%), Gaps = 12/323 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + N L   L     +K A   L+   S    P+  +  + +  +C+ G + EA
Sbjct: 268 GISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEA 327

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + EMGV   + T++S + G           KL+  +I  G          LI  
Sbjct: 328 QGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILING 387

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ E  +L  +++  GL P N ++N LI   C+  +      L   M      P+
Sbjct: 388 YCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNGNLPN 447

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +++G CK     +A+R+F  ++     P+ VMY  +I  +CK G L DARK++ 
Sbjct: 448 LFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDARKLFS 507

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+  KGL PN   Y ++I+G C+   L+EA    + M + G     ++YN +I G   H 
Sbjct: 508 ELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGFLHHK 567

Query: 389 RTDEAYHLFEEMAQKGIFRDVIT 411
               A  L  EM  KG   DV T
Sbjct: 568 DESRAVQLIGEMRDKGFIADVGT 590



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 116/222 (52%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  F +  +V   + +L ++++ GL P    F  LI+  C+   F +  EL   MVAR 
Sbjct: 139 LINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARG 198

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD +TY  +INGLCK  +   A  +   ++E G  P+ V Y+T+I    K   + +A 
Sbjct: 199 CRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNEAL 258

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M  KG+ P+ +TYNS+I G C     +EA  L  EM         VT+N L+  +
Sbjct: 259 DIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTI 318

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G+  EA  + + M + G+  DV+TY++L+ GY    ++V
Sbjct: 319 CKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVV 360



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/206 (33%), Positives = 102/206 (49%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            L +Q+   GL P     + LI+ F   +       +L  ++     P   T+  +IN L
Sbjct: 119 SLTKQMELAGLSPNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWL 178

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK  K  +A  +F+D+  RG  PD   YTT+I+GLCK+G    A  +  +M   G  PN 
Sbjct: 179 CKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNV 238

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TY+++I  + +   + EA  +   M  KG      TYN+LI GLC   +  EA  L  E
Sbjct: 239 VTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNE 298

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M    I  D++T+N L+   CKEGK+
Sbjct: 299 MRSLNIMPDIVTFNVLVDTICKEGKV 324



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 1/212 (0%)

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE-KKNFGRVSELLHTMVARNRAPD 268
           C+   + +       +L    +P    F KL+S   +  + +  V  L   M     +P+
Sbjct: 73  CSFRNIDDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPN 132

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T   +IN     ++   A+ V   + + G  P  V +TT+I+ LCK+G    A +++ 
Sbjct: 133 IYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFD 192

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G  P+ YTY ++I+G C+I     A  L K+M + G     VTY+T+I       
Sbjct: 193 DMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHRKDR 252

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           R +EA  +F  M  KGI  D+ TYN+LIQG C
Sbjct: 253 RVNEALDIFSYMKVKGISPDIFTYNSLIQGLC 284


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 9/290 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I  LCE+G I EA   F+ + E     +++T+   +       R      L++++ E G 
Sbjct: 271 IHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGC 330

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C + K+ E  ++L ++ E GL+P    +N LI  +C++       E
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M + +  P+  TY E+I GLCK RK  +A  + N + ER   P  + Y ++IHG C
Sbjct: 391 ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQC 450

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K+  L  A ++   M   GL+P+++TY+  I   C+   +EEA  L   +  KG     V
Sbjct: 451 KVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            Y  LI G C  G+ D AY L E M       +  TYN LI+G CKE K+
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 144/303 (47%), Gaps = 11/303 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN ++  + I  LC+   ++EA    S++ E G+  S+ T+N+ + G  K    D  
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDA 388

Query: 193 WKLYHDLIESGY----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           +++  DL+ES            LI   C   KV +   LL ++LE  L P    +N LI 
Sbjct: 389 FEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIH 447

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C+  +      LL  M      PD +TY   I+ LCK  +  EA  +F+ +K +G   
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + V+YT +I G CK+G +  A  +   M++   LPN YTYN +I G C+   ++EA  L 
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV 567

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            +ML  G   T VTY  LI  +   G  D A  +F  M   G   DV TY   +  Y  +
Sbjct: 568 AKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQ 627

Query: 423 GKI 425
           G +
Sbjct: 628 GML 630



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 12/329 (3%)

Query: 107 VSCNVLFDSLVEARAFKVAMD-FLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           VS   L   L EA     A+  F D T     P   +  + I  L  SG   EA   F++
Sbjct: 265 VSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNE 324

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           +KE G   ++ T+   + G  K ++ D   K+  ++ E G          LI  +C +G 
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + + +E+L  +  +   P    +N+LI   C+K+   +   LL+ M+ R  +P   TY  
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G CK      AYR+ + + E G VPD   Y+  I  LCK G + +A  ++  +  KG
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +  NE  Y ++I GYC++  ++ A  L + ML+      + TYN LI GLC   +  EA 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            L  +M   G+   V+TY  LI    K+G
Sbjct: 565 SLVAKMLTMGVKPTVVTYTILIGEMLKDG 593



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 177/406 (43%), Gaps = 40/406 (9%)

Query: 53  TKPRWEQ--TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN 110
           ++P W++  +L   +PS     P           +   ++ FF W+    GF  ++ S +
Sbjct: 49  SRPNWQKHPSLRKLLPSLT---PSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYS 105

Query: 111 VLFDSLVEARAFKVAMDF-----------------------LDSTG---FSPNPNSLELY 144
            + + L+ AR   VA                          +++ G   F P        
Sbjct: 106 SMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTI 165

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           +  L +  LI+E    + +L    +  +I T+N+ + G  KI            ++++G 
Sbjct: 166 LMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGL 225

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C +  V   YE+   + + G      ++  LI   CE        +
Sbjct: 226 HPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALK 285

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M   N  P   TY  +I  L  S +++EA  +FN++KE+G  P+   YT +I GLC
Sbjct: 286 LFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLC 345

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   + +ARKM  EM  KGL+P+  TYN++I GYC+   +++A  +   M     G  T 
Sbjct: 346 KENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTR 405

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           TYN LI GLC   +  +A  L  +M ++ +   +ITYN+LI G CK
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 140/356 (39%), Gaps = 58/356 (16%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
            SP L++ N L     +    + A   +  ++  G  P+  +  ++I  LC+ G +EEA 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             F  +K  GV  +   + +                          LI  +C  GK+   
Sbjct: 495 TLFDSVKAKGVKANEVIYTA--------------------------LIDGYCKVGKIDVA 528

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           Y LL ++L D  +P +  +N LI   C++K     S L+  M+     P   TY  +I  
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE 588

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           + K      A +VFN +   GY PD   YT  +H     G L +   +  +M  +G+LP+
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE------ 392
             TY  +I GY R+     A    K M+D G   +    + LI  L    R  E      
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 393 -----------------------AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                                  A  LFE+M + G   DV  Y  LI G+C++ ++
Sbjct: 709 IDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERL 764



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 148/341 (43%), Gaps = 14/341 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S  G  P +V+ N L D   +      AF++ +D ++S    PN  +    I  LC+   
Sbjct: 361 SEKGLIPSVVTYNALIDGYCKEGMIDDAFEI-LDLMESNSCGPNTRTYNELICGLCKKRK 419

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------- 205
           + +A    +K+ E  +  S+ T+NS + G  K++  +  ++L   + E+G +        
Sbjct: 420 VHKAMALLNKMLERKLSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSV 479

Query: 206 -IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I   C +G+V E   L   V   G+      +  LI  +C+         LL  M+   
Sbjct: 480 FIDTLCKEGRVEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDA 539

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+++TY  +I GLCK +K  EA  +   +   G  P  V YT +I  + K G    A 
Sbjct: 540 CLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHAL 599

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++  M+  G  P+  TY + +H Y     LEE   +  +M ++G     VTY  LI G 
Sbjct: 600 KVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGY 659

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G T  A+   + M   G    +   + LI+    E ++
Sbjct: 660 ARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRM 700



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 164/388 (42%), Gaps = 27/388 (6%)

Query: 33  TKESQQLYTEIAKQVCKITRTKPRWE--QTLLSD--IP-SFNFNDPLFFREFLKQQNNVL 87
            K ++ +YT +    CK+ +    +   + +L+D  +P S+ +N  +      K++    
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYN--VLIEGLCKEKKMKE 562

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELY 144
            S    + L    G  P +V+  +L   +++  AF  A+   +   S G+ P+  +   +
Sbjct: 563 ASSLVAKMLT--MGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           +      G++EE     +K+ E G+   + T+   + G  ++  T   +     ++++G 
Sbjct: 621 LHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGC 680

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI+   ++ ++ E         E G+   +   +  I+   +   +    +
Sbjct: 681 KPSLYIVSILIKNLSHENRMKETRS------EIGIDSVSNVNSVDIADVWKTLEYEIALK 734

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   MV      D   Y  +I G C+  +  EA  + + +KERG  P   +Y +++   C
Sbjct: 735 LFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC 794

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K+G   +A ++   M+  GLLP   +Y  ++ G     + E+AK +   +L  GY    V
Sbjct: 795 KLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEV 854

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            +  LI GL      DE   L + M +K
Sbjct: 855 AWKVLIDGLLKRDLVDECSELIDIMEEK 882



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 3/190 (1%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +I   C  ++   V E+   M A       P    Y  ++  L K     E   V+ +L 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                P+   +  +++G CK+G + +A     +++  GL P+ +TY S+I G+CR   ++
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A  +   M  KG     V+Y  LI GLC  GR +EA  LF +M +      V TY  LI
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 417 QGYCKEGKIV 426
                 G+ V
Sbjct: 307 YALSGSGRKV 316



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P    YN+++    +   ++E K ++ E+L+        T+N ++ G C  G   EA   
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             ++ Q G+  D  TY +LI G+C+   + N
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDN 247


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/351 (28%), Positives = 172/351 (49%), Gaps = 14/351 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD-----STGFSPNPNSLEL 143
           +I  F  +   +     + S N + + +++   F  A++F +      T  SPN  S  L
Sbjct: 134 AIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNL 193

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-IES 202
            I+ +C+ GL++ A   F ++        + T+ + + G  K DR D    L  ++ IE 
Sbjct: 194 VIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEG 253

Query: 203 GY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
            +        LI   C  G +    +L+  +   G VP    +N +I+  C K    +  
Sbjct: 254 CFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAV 313

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LL  MVA    P++ TY  +INGL K  + ++   + + L+ERG+  +   Y+T+I GL
Sbjct: 314 SLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGL 373

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K     +A  +W +M+ KG  PN   Y+++I G CR   L+EAK +  EM++KG     
Sbjct: 374 FKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNA 433

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            TY++LI G    G + +A  +++EMA+     + I Y+ LI G C++GK+
Sbjct: 434 FTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 147/332 (44%), Gaps = 14/332 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V+ NVL + L +          +D+    G  PN  +    I  LC  G +++A
Sbjct: 253 GCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKA 312

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++       +  T+ + + G +K  R+     L   L E G+         LI  
Sbjct: 313 VSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISG 372

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              + K  E   L ++++E G  P    ++ LI   C +       E+L  MV +   P+
Sbjct: 373 LFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPN 432

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I G  K+    +A RV+ ++ +   VP+ + Y+ +IHGLC+ G L +A  MW 
Sbjct: 433 AFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWT 492

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML--DKGYGETTVTYNTLIAGLCL 386
            M+ +GL P+   Y+SMIHG C   ++E   +L  EML  +       VTYN L+  LC 
Sbjct: 493 HMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCK 552

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                 A  L   M  +G   D+IT N  +  
Sbjct: 553 QNSISHAIDLLNSMLDRGCNPDLITCNIFLNA 584



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 153/360 (42%), Gaps = 35/360 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N + + L        A+  LD   ++   PN  +    I  L + G   + 
Sbjct: 288 GCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDG 347

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               S L+E G   +   +++ + G  K ++++    L+  ++E G          LI  
Sbjct: 348 VHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDG 407

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK+ E  E+L +++  G  P    ++ LI  F +  N  +   +   M   N  P+
Sbjct: 408 LCREGKLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPN 467

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLC+  K  EA  ++  +  RG  PD V Y+++IHGLC  G +    K++ 
Sbjct: 468 EICYSVLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFN 527

Query: 329 EMI--HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL-- 384
           EM+       P+  TYN ++   C+ +++  A  L   MLD+G     +T N  +  L  
Sbjct: 528 EMLCQESDSQPDVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALRE 587

Query: 385 -----------------CLHGRTD--EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                             LH R     A  + E M QK +  +  T+  +I   CK  K+
Sbjct: 588 KLNPPQDGREFLDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKV 647



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 2/194 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVA--RNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           +FN +++   ++  F R  E     V    N +P+  ++  VI  +CK      A  VF 
Sbjct: 153 SFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPNVLSFNLVIKAMCKLGLVDRAIEVFR 212

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++  +   PD   Y T++ GLCK   + +A  +  EM  +G  P+  T+N +I+G C+  
Sbjct: 213 EMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLDEMQIEGCFPSSVTFNVLINGLCKKG 272

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++    +L   M  KG     VTYNT+I GLCL G+ D+A  L + M       + +TY 
Sbjct: 273 DMVRVTKLVDNMFLKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYG 332

Query: 414 TLIQGYCKEGKIVN 427
           TLI G  K+G+ V+
Sbjct: 333 TLINGLVKQGRSVD 346


>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
 gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
          Length = 662

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 179/360 (49%), Gaps = 19/360 (5%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR---AFKVAMDFLDSTGFSP 136
           LK + N+LL++ FF+ + +   F    ++   +   L   R     +  +  +   G S 
Sbjct: 47  LKNEPNILLALHFFKSIANSNSFKHTPLTYTTMIKRLGYERDIDGIQYLLQLMKLEGISC 106

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N +   + I     +GL E+A   F ++ E G   S+K +N  L   +  ++  ++  +Y
Sbjct: 107 NEDLFVIVINAYRRAGLAEQALKTFYRIGEFGCKPSVKIYNHVLDALLSENKFQMINGIY 166

Query: 197 HDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
           +++   G          L++A C + +V    +LL ++   G +P+  ++  ++S  C  
Sbjct: 167 NNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCR- 225

Query: 248 KNFGRVSELLH-TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
              G+V E    +M  ++  P    Y  +ING C+  K  E + +FN++   G  PD + 
Sbjct: 226 --LGKVEEARELSMRIKSFVP---VYNALINGFCREHKMEEVFELFNEMAVEGIDPDVIT 280

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+TVI+ L +MG +  A  +  +M  +G  PN +T+ S++ GY     L EA  L   M+
Sbjct: 281 YSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEALDLWNRMI 340

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +G    TV YNTLI GLC +G+  EA  + ++M + G+F +  TY+TLI G+ K G +V
Sbjct: 341 QEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLV 400



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 157/334 (47%), Gaps = 7/334 (2%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
             +G  P +   N + D+L+    F++     ++    G   N  +  + ++ LC++  +
Sbjct: 135 GEFGCKPSVKIYNHVLDALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRV 194

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD----LVWKLYHDLIESGYLIQAFC 210
           + A    +++   G      ++ + +    ++ + +    L  ++   +     LI  FC
Sbjct: 195 DAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFC 254

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            + K+ E +EL  ++  +G+ P+   ++ +I+   E  N      +L  M  R  +P+  
Sbjct: 255 REHKMEEVFELFNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVH 314

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  ++ G     +  EA  ++N + + G  P+TV Y T+IHGLC  G + +A  +  +M
Sbjct: 315 TFTSLMKGYFMGGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKM 374

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G+ PNE TY+++I G+ +  +L  A  +  +M+  G     V Y  ++  LC +   
Sbjct: 375 ERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMF 434

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + A HL E MA      + IT+NT I+G C  GK
Sbjct: 435 NHALHLIENMANGNCPPNTITFNTFIKGLCCSGK 468



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 150/352 (42%), Gaps = 23/352 (6%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS--- 135
           + LLS   FQ ++  Y      G   ++ + N+L  +L +      A   L    +    
Sbjct: 151 DALLSENKFQMINGIYNNMKRDGIELNVYTYNMLLKALCKNDRVDAARKLLAEMSYKGCI 210

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  S    +  +C  G +EEA     ++K       +  +N+ + G  +  + + V++L
Sbjct: 211 PDAVSYTTVVSSMCRLGKVEEARELSMRIKSF-----VPVYNALINGFCREHKMEEVFEL 265

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           ++         D+I    +I      G V     +L ++   G  P    F  L+  +  
Sbjct: 266 FNEMAVEGIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFM 325

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   +L + M+     P+   Y  +I+GLC   K +EA  V   ++  G  P+   
Sbjct: 326 GGRLCEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETT 385

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T+I G  K G L  A ++W +MI  G LPN   Y  M+   CR      A  L + M 
Sbjct: 386 YSTLIDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMA 445

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +      T+T+NT I GLC  G+T+ A  +  +M Q G   +V TYN ++ G
Sbjct: 446 NGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDG 497



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 137/302 (45%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  +    I  L E G +E A    +K+   G   ++ T+ S + G     R    
Sbjct: 273 GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRLCEA 332

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L++ +I+ G          LI   C+ GK+ E   + +++  +G+ P  T ++ LI  
Sbjct: 333 LDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDG 392

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           F +  +    SE+ + M+     P+   Y  +++ LC++     A  +  ++      P+
Sbjct: 393 FAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPN 452

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T+ + T I GLC  G    A K+  +M   G  PN  TYN ++ G        EA ++  
Sbjct: 453 TITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVG 512

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E+ +       VTYNT+++G C  G    A  +  ++   G   D ITYNT+I  YCK+G
Sbjct: 513 EIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQG 572

Query: 424 KI 425
           ++
Sbjct: 573 EV 574



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 175/396 (44%), Gaps = 21/396 (5%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLL--SDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLH 97
           YT +   +C++ + +   E ++   S +P +N     F RE   ++         F  + 
Sbjct: 216 YTTVVSSMCRLGKVEEARELSMRIKSFVPVYNALINGFCREHKMEE-----VFELFNEMA 270

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
              G  PD+++ + + ++L E    ++A+  L      G SPN ++    ++     G +
Sbjct: 271 VE-GIDPDVITYSTVINTLSEMGNVEMALAVLAKMFLRGCSPNVHTFTSLMKGYFMGGRL 329

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLI---ESGY--L 205
            EA   ++++ + G   +   +N+ + G       ++   +  K+  + +   E+ Y  L
Sbjct: 330 CEALDLWNRMIQEGSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTL 389

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  F   G +    E+  +++ +G +P    +  ++   C    F     L+  M   N 
Sbjct: 390 IDGFAKAGDLVGASEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNC 449

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  T+   I GLC S K   A +V N +++ G  P+   Y  V+ GL       +A +
Sbjct: 450 PPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQ 509

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  E+    +  N  TYN+++ G+C     + A ++  ++L  G    ++TYNT+I   C
Sbjct: 510 IVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYC 569

Query: 386 LHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYC 420
             G    A  L + + +KG  + DV TY +L+ G C
Sbjct: 570 KQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVC 605



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 136/296 (45%), Gaps = 10/296 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC  G + EA     K++  GVF +  T+++ + G  K       
Sbjct: 343 GSEPNTVAYNTLIHGLCSYGKMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGA 402

Query: 193 WKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++++ +I +G L         +   C +   +    L+  +      P    FN  I  
Sbjct: 403 SEIWNKMITNGCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKG 462

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C         ++L+ M     AP+  TY EV++GL  +++  EA ++  +++E     +
Sbjct: 463 LCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEIEEMEIKSN 522

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y T++ G C  G    A ++  +++  G  P+  TYN++I+ YC+   ++ A +L  
Sbjct: 523 LVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIYAYCKQGEVKTAIQLVD 582

Query: 364 EMLDKGYGETTV-TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +  KG G   V TY +L+ G+C     DEA    ++M  +GI  +  T+N L++G
Sbjct: 583 RLTKKGEGYPDVFTYTSLLWGVCNWIGVDEAVVHLDKMINEGICPNRATWNALVRG 638



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 110/254 (43%), Gaps = 34/254 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V    + D L     F  A+  +++       PN  +   +I+ LC SG  E A
Sbjct: 413 GCLPNVVVYTCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWA 472

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               +++++ G   ++ T+N  L G     RT                           E
Sbjct: 473 MKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRT--------------------------RE 506

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +++ ++ E  +      +N ++S FC    F    ++   ++     PD+ TY  VI 
Sbjct: 507 ALQIVGEIEEMEIKSNLVTYNTILSGFCHAGMFKGALQIAGKLLVGGTKPDSITYNTVIY 566

Query: 278 GLCKSRKRLEAYRVFNDLKERGY-VPDTVMYTTVIHGLCKMGWLG--DARKMWFEMIHKG 334
             CK  +   A ++ + L ++G   PD   YT+++ G+C   W+G  +A     +MI++G
Sbjct: 567 AYCKQGEVKTAIQLVDRLTKKGEGYPDVFTYTSLLWGVCN--WIGVDEAVVHLDKMINEG 624

Query: 335 LLPNEYTYNSMIHG 348
           + PN  T+N+++ G
Sbjct: 625 ICPNRATWNALVRG 638


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 117/398 (29%), Positives = 179/398 (44%), Gaps = 39/398 (9%)

Query: 59  QTLLSDIPSFNF------NDPLFFREFLKQQN--------NVLLS-------IRFFQWLH 97
           +T  SD  SF+F      + PL  R  L+Q          N +LS       I  FQ L 
Sbjct: 198 KTFSSDPASFDFLLLCLPSAPLLRR--LRQYGISPSPEACNAVLSRLPLDEAIELFQELP 255

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
                  ++ S N+L  +L +A   K A    D    +P+  +  + I   C  G +E A
Sbjct: 256 HK-----NVCSYNILLKALCDAGRVKDARQLFDEMASAPDVVTYGILIHGHCALGELENA 310

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL-LGCIKIDRTDLVWKLYHDLIESGYLI---------Q 207
                ++   GV  +   + S + L C K   +D   ++  D+++   ++          
Sbjct: 311 VKLLDEMVAGGVEPNATVYTSVVALLCDKGWISD-ALRVVEDMVQRKVILDEALYTTVLS 369

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FCN G +        ++   GL  +   +  +I+  C         +LL  M AR    
Sbjct: 370 GFCNKGDLVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDV 429

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+G CK  K  EA+++ N + +RG  P+ V YT +  GLCK G +  A ++ 
Sbjct: 430 DEVTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELL 489

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM +KGL  N  TYNS+I+G C+   LE+A R   +M          TY TLI  LC  
Sbjct: 490 HEMSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKS 549

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D A+ L +EM  KGI   ++TYN L+ G+C  G++
Sbjct: 550 GDLDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRV 587



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/419 (24%), Positives = 165/419 (39%), Gaps = 82/419 (19%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQ 146
           ++  + L      +PD+V+  +L          + A+  LD   + G  PN       + 
Sbjct: 275 VKDARQLFDEMASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVA 334

Query: 147 CLCESGLIEEA-------------------------FCA----------FSKLKEMGVFG 171
            LC+ G I +A                         FC           F +++  G+  
Sbjct: 335 LLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGLAT 394

Query: 172 SIKTWNSALLG-CIKIDRTDL------VWKLYHDLIESGY--LIQAFCNDGKVSEGYELL 222
              T+ + + G C  ++  +       +W    D+ E  Y  LI  +C  GK++E +++ 
Sbjct: 395 DGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMH 454

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
             +++ G+ P    +  L    C++ +    +ELLH M  +    +  TY  +INGLCK+
Sbjct: 455 NAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKA 514

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP----- 337
               +A R   D+      PD   YTT+I  LCK G L  A  +  EM+ KG+ P     
Sbjct: 515 GYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTY 574

Query: 338 ------------------------------NEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
                                         N  TYNS++  YC  +N++    ++K M  
Sbjct: 575 NVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRS 634

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +  G    TYN LI G C      EA +  +EM QKG      +Y+ LI+   K+ K V
Sbjct: 635 RDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFV 693



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 140/325 (43%), Gaps = 12/325 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G + D V+   + + L  A   + A   L    +     +  +  + I   C+ G + EA
Sbjct: 391 GLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEA 450

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   + + + GV  ++ T+ +   G  K        +L H++   G          LI  
Sbjct: 451 FQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLING 510

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +    +  +    L P+   +  LI   C+  +  R   LL  M+ +   P 
Sbjct: 511 LCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPT 570

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NG C S +     ++ + + E+   P+   Y +++   C    +    +++ 
Sbjct: 571 IVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYK 630

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  + + PNE TYN +I G+C+  N++EA   H EM+ KG+  T  +Y+ LI  L    
Sbjct: 631 GMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKK 690

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYN 413
           +  EA  LF +M ++G+  +   Y+
Sbjct: 691 KFVEARELFHDMRKEGLTAESDVYD 715



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 67/279 (24%), Positives = 126/279 (45%), Gaps = 12/279 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L D L +    + A + L    + G   N  +    I  LC++G +E+A
Sbjct: 461 GVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLEQA 520

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               + +    +   + T+ + +    K    D    L  ++++ G          L+  
Sbjct: 521 MRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIVTYNVLMNG 580

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G+V  G +LL  +LE  + P    +N L+ ++C + N    +E+   M +R+  P+
Sbjct: 581 FCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKGMRSRDVGPN 640

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G CK+R   EA    +++ ++G+      Y+ +I  L K     +AR+++ 
Sbjct: 641 ENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSALIRLLNKKKKFVEARELFH 700

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           +M  +GL      Y+  I      DNLE    L  E+++
Sbjct: 701 DMRKEGLTAESDVYDFYIDLNFNEDNLESTLALCDELVE 739



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA  +F +L  +    +   Y  ++  LC  G + DAR+++ EM      P+  TY  +I
Sbjct: 246 EAIELFQELPHK----NVCSYNILLKALCDAGRVKDARQLFDEMASA---PDVVTYGILI 298

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           HG+C +  LE A +L  EM+  G       Y +++A LC  G   +A  + E+M Q+ + 
Sbjct: 299 HGHCALGELENAVKLLDEMVAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVI 358

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
            D   Y T++ G+C +G +V+
Sbjct: 359 LDEALYTTVLSGFCNKGDLVS 379


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 162/343 (47%), Gaps = 17/343 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S +L + ++L +         +A+  L      G+ P+  +L   +   C    I +A
Sbjct: 111 GISHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDA 170

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ EMG      T+N+ + G  + +R      L           DL+  G ++  
Sbjct: 171 VSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNG 230

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +     LL+++ +  + P    +N +I   C  KN      L   M  +   P+
Sbjct: 231 LCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPN 290

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I  LC   +  +A R+ +D+ ER   P+ V ++ +I    K G L +A K++ 
Sbjct: 291 VVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 350

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI + + P+ +TY+S+I+G+C  D L+EAK + + M+ K      VTYNTLI G C   
Sbjct: 351 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAK 410

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY-----CKEGKIV 426
           R DE   LF EM+Q+G+  + +TY TLI G+     C   +IV
Sbjct: 411 RVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIV 453



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 154/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+V+ N L +          A+  +      G+ P+  +    I  L       EA
Sbjct: 146 GYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEA 205

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGY-----LIQA 208
                ++   G    + T+   + G  K    DL   L   +    IE G      +I A
Sbjct: 206 VALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDA 265

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN   V++   L  ++   G+ P    +N LI   C    +   S LL  M+ R   P+
Sbjct: 266 LCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPN 325

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K +EA ++++++ +R   PD   Y+++I+G C    L +A+ M+ 
Sbjct: 326 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 385

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI K   PN  TYN++I G+C+   ++E   L +EM  +G    TVTY TLI G     
Sbjct: 386 LMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 445

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F++M   G+  D++TY+ L+ G C  GK+
Sbjct: 446 ECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKV 482



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD  + N L   L        A+  +D     G  P+  +  + +  LC+ G I+ A
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+++  +   +  +N+ +         +    L+ ++   G          LI+ 
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  ++E  + P    F+ LI  F ++       +L   M+ R+  PD
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C   +  EA  +F  +  +   P+ V Y T+I G CK   + +  +++ 
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TY ++IHG+ +    + A+ + K+M+  G     +TY+ L+ GLC +G
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + + A  +FE + +  +  D+ TYN +I+G CK GK+
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKV 517



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 167/370 (45%), Gaps = 47/370 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDLV+  ++ + L +     +A+  L   +     P        I  LC    + +A
Sbjct: 216 GCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDA 275

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F+++   G+  ++ T+NS +       R     +L  D+IE            LI A
Sbjct: 276 LNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDA 335

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ E  +L  ++++  + P+   ++ LI+ FC          +   M++++  P+
Sbjct: 336 FVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPN 395

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G CK+++  E   +F ++ +RG V +TV YTT+IHG  +     +A+ ++ 
Sbjct: 396 VVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFK 455

Query: 329 EMIHKGLLPNE-----------------------------------YTYNSMIHGYCRID 353
           +M+  G+LP+                                    YTYN MI G C+  
Sbjct: 456 QMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAG 515

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +E+   L   +  KG     VTY T+++G C  G  +EA  LF EM ++G   D  TYN
Sbjct: 516 KVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYN 575

Query: 414 TLIQGYCKEG 423
           TLI+ + ++G
Sbjct: 576 TLIRAHLRDG 585



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 141/313 (45%), Gaps = 14/313 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++V+ N L   L      + A ++  D ++    +PN  +    I    + G + E
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVE 344

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A   + ++ +  +   I T++S + G    DR D    ++  +I             LI+
Sbjct: 345 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIK 404

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   +V EG EL R++ + GLV     +  LI  F + +       +   MV+    P
Sbjct: 405 GFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLP 464

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++GLC + K   A  VF  L+     PD   Y  +I G+CK G + D   ++
Sbjct: 465 DIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLF 524

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ PN  TY +M+ G+CR    EEA  L +EM ++G    + TYNTLI      
Sbjct: 525 CSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIRAHLRD 584

Query: 388 GRTDEAYHLFEEM 400
           G    +  L  EM
Sbjct: 585 GDKAASAELIREM 597



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 110/229 (48%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           +  ++E   L+ A     K      L  Q+   G+      ++ LI+ FC +        
Sbjct: 78  FPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFCRRSQLSLALA 137

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M+     PD  T   ++NG C   +  +A  +   + E GY PD+  + T+IHGL 
Sbjct: 138 VLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSFTFNTLIHGLF 197

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           +     +A  +   M+ KG  P+  TY  +++G C+  +++ A  L K+M         V
Sbjct: 198 RHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLALSLLKKMEQGKIEPGVV 257

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            YNT+I  LC +   ++A +LF EM  KGI  +V+TYN+LI+  C  G+
Sbjct: 258 IYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGR 306



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/210 (30%), Positives = 100/210 (47%)

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           ND K+ +   L   +++    P    F+KL+S   +   F  V  L   M     + + +
Sbjct: 58  NDLKLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLY 117

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +IN  C+  +   A  V   + + GY PD V   ++++G C    + DA  +  +M
Sbjct: 118 TYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQM 177

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +  G  P+ +T+N++IHG  R +   EA  L   M+ KG     VTY  ++ GLC  G  
Sbjct: 178 VEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           D A  L ++M Q  I   V+ YNT+I   C
Sbjct: 238 DLALSLLKKMEQGKIEPGVVIYNTIIDALC 267



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 83/170 (48%)

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   MV     P    + ++++ + K  K      +   ++  G   +   Y+ +I+  C
Sbjct: 68  LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSILINCFC 127

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           +   L  A  +  +M+  G  P+  T NS+++G+C  + + +A  L  +M++ GY   + 
Sbjct: 128 RRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMGYQPDSF 187

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T+NTLI GL  H R  EA  L + M  KG   D++TY  ++ G CK G I
Sbjct: 188 TFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDI 237



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 23/106 (21%), Positives = 50/106 (47%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DA  ++ +M+     P+   ++ ++    +++  +    L ++M + G      TY+ 
Sbjct: 62  LDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI   C   +   A  +  +M + G   D++T N+L+ G+C   +I
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRI 167


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 110/381 (28%), Positives = 169/381 (44%), Gaps = 30/381 (7%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS----- 131
           R  ++ + +  L+++FF+W  + +GF     S  +L   L  AR +  A  FL       
Sbjct: 100 RVLVELKQDPKLALKFFRWAKTKFGFCLTTESYCLLVHILFYARMYFDANFFLKELISSR 159

Query: 132 ---TGFS-------------PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
               GF              P     +       E G++EEA   FS++    VF   ++
Sbjct: 160 RILPGFDVFEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARS 219

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVL 226
            N+ L    K  + DL  K + D++ +G          +I   C +G +     L  Q+ 
Sbjct: 220 CNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMK 279

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           + GL P+   +N LI  + +         L   M      PD  TY  +IN  CK  +  
Sbjct: 280 QMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMP 339

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A+   +++K  G  P+ V Y+T+I  LCK   L  A K   +M   GL PNE+TY S+I
Sbjct: 340 KAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLI 399

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
              C+   L +A +L  EML    G   VTY TL+ GLC  GR  EA  LF  M + G+ 
Sbjct: 400 DANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVT 459

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
            ++ TY  L+ G+ K  ++ N
Sbjct: 460 PNLKTYTALVHGHIKNKRVEN 480



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 157/335 (46%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P   SCN     L +     ++  F   +   G + +  +  + I  +C+ G +  A   
Sbjct: 215 PKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSL 274

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F ++K+MG+   I T+NS + G  K+   D  + L+          D+I    LI  FC 
Sbjct: 275 FHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCK 334

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             ++ + +  L ++   GL P    ++ LI   C++    +  + L  M     +P+ FT
Sbjct: 335 YEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFT 394

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+  CK+    +A ++ +++ +     + V YTT++ GLCK G + +A  ++  MI
Sbjct: 395 YTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMI 454

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ PN  TY +++HG+ +   +E A  L KE+ +K      + Y T+I GLC   + +
Sbjct: 455 KAGVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLE 514

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           E   +  EM   GI  + + Y   +  Y K GK V
Sbjct: 515 ECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTV 549



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 144/307 (46%), Gaps = 11/307 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KID 187
           +   G +P+  +    I    + GL++E+FC F ++K++G    + T+N AL+ C  K +
Sbjct: 278 MKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYN-ALINCFCKYE 336

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           +    +   H++  SG          LI A C +  + +  + L  +   GL P    + 
Sbjct: 337 QMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYT 396

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI   C+        +L   M+      +  TY  +++GLCK  + +EA  +F  + + 
Sbjct: 397 SLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKA 456

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  P+   YT ++HG  K   + +A ++  E+  K + P+   Y ++I G C  + LEE 
Sbjct: 457 GVTPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEEC 516

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           + +  EM   G    +V Y   +      G+T EA +L +EM   G+   ++T+  LI G
Sbjct: 517 EFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDG 576

Query: 419 YCKEGKI 425
            CK+G +
Sbjct: 577 LCKKGLV 583



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 160/385 (41%), Gaps = 50/385 (12%)

Query: 91  RFFQWLH--SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPN-------- 137
           + F +LH   + G  P++V+ + L D+L +    + A+ FL      G SPN        
Sbjct: 340 KAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLI 399

Query: 138 ---------PNSLEL------------------YIQCLCESGLIEEAFCAFSKLKEMGVF 170
                     ++L+L                   +  LC+ G + EA   F  + + GV 
Sbjct: 400 DANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGVT 459

Query: 171 GSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
            ++KT+ + + G IK  R +            K+  DL+  G +I   C+  K+ E   +
Sbjct: 460 PNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFV 519

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           + ++   G+   +  +   +  + +         LL  M          T+  +I+GLCK
Sbjct: 520 MSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCK 579

Query: 282 SRKRLEAYRVFNDLKERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
                EA   F  + +    P+ V + T +I GLCK  ++  A+K++ EM  K ++P++ 
Sbjct: 580 KGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKI 639

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            Y ++I G  +  + +EA  +   M + G       Y +L+ GL       +A     EM
Sbjct: 640 AYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEM 699

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
             KGI  D I    L++ Y + G I
Sbjct: 700 IGKGIVPDEILCIRLLRKYYELGSI 724



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 106/257 (41%), Gaps = 10/257 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC    +EE     S++K  G+  +   +   +    K  +T     L  ++ + G    
Sbjct: 507 LCSQNKLEECEFVMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVT 566

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF-NKLISRFCEKKNFGRVSELL 257
                 LI   C  G V E  +   ++ +  L P N A    LI   C+        +L 
Sbjct: 567 IVTFCVLIDGLCKKGLVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLF 626

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  +N  PD   Y  +I+G  K +   EA  + + + E G   D   YT+++ GL + 
Sbjct: 627 DEMQDKNMVPDKIAYTALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQG 686

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  AR    EMI KG++P+E     ++  Y  + +++EA  LH E+L K   +  +  
Sbjct: 687 NLVQQARMFLNEMIGKGIVPDEILCIRLLRKYYELGSIDEAIELHDELLKKVPLDELLEE 746

Query: 378 NTLIAGLCLHGRTDEAY 394
             L+    L  R  + Y
Sbjct: 747 QNLMPEKILRCRDGDGY 763


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 97/326 (29%), Positives = 155/326 (47%), Gaps = 34/326 (10%)

Query: 101 GFSPDLVSCNVLF-----DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           G+ P +++ N +       SL  AR F    D + S G +PN  +  + ++ LC  G  +
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTSARRF---FDSMLSDGVAPNVYTYNILVRALCGRGHRK 207

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EA      ++  G   ++ T+N+                          L+ AF   G+V
Sbjct: 208 EALSILRDMRGAGCGPNVVTYNT--------------------------LVAAFFRAGEV 241

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                L+  + E GL P    FN +++  C+        ++   MV    APD  +Y  +
Sbjct: 242 DGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTL 301

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           + G CK+    EA  VF ++ ++G +PD V +T++IH +CK G L  A  +  +M  +GL
Sbjct: 302 VGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGL 361

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             NE T+ ++I G+C+   L++A    + M       + V YN LI G C+ GR DEA  
Sbjct: 362 QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARE 421

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCK 421
           L  EM  KG+  DV+TY+T+I  YCK
Sbjct: 422 LLHEMEAKGLKPDVVTYSTIISAYCK 447



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 169/347 (48%), Gaps = 13/347 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQC 147
           RFF  + S  G +P++ + N+L  +L      K A+  L      G  PN  +    +  
Sbjct: 176 RFFDSMLSD-GVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAA 234

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
              +G ++ A      ++E G+  ++ T+NS + G  K  + +   K++ +++  G    
Sbjct: 235 FFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPD 294

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+  +C  G   E   +  ++ + G++P+   F  LI   C+  N  R   L+ 
Sbjct: 295 GVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVR 354

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  R    +  T+  +I+G CK     +A      +K+    P  V Y  +I+G C +G
Sbjct: 355 QMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVG 414

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +AR++  EM  KGL P+  TY+++I  YC+  +   A  L+++ML+KG     +TY+
Sbjct: 415 RMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYS 474

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +LI  LC   R  +A+ LF+ M + G+  D  TY +LI G+CKEG +
Sbjct: 475 SLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNV 521



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 156/337 (46%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ N + + + +A   + A    D     G +P+  S    +   C++G   EA
Sbjct: 255 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEA 314

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++ + G+   + T+ S +    K    +    L   + E G          LI  
Sbjct: 315 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDG 374

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + +    +R + +  + P    +N LI+ +C         ELLH M A+   PD
Sbjct: 375 FCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 434

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  CK+     A+ +   + E+G +PD + Y+++I  LC    L DA  ++ 
Sbjct: 435 VVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFK 494

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  GL P+E+TY S+I G+C+  N+E A  LH +M+  G     VTY+ LI GL    
Sbjct: 495 NMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSA 554

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  EA  L  ++  +        Y+ L+   C++ ++
Sbjct: 555 RAMEAQQLLFKLYHEDPIPANTKYDALMH-CCRKAEL 590



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 126/267 (47%), Gaps = 10/267 (3%)

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
           G   S+  +N+ LL       T    + +  ++  G          L++A C  G   E 
Sbjct: 151 GYVPSVLAYNAVLLALSDASLTS-ARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEA 209

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +LR +   G  P    +N L++ F           L+  M      P+  T+  ++NG
Sbjct: 210 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNG 269

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           +CK+ K  +A +VF+++   G  PD V Y T++ G CK G   +A  ++ EM  KG++P+
Sbjct: 270 MCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 329

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             T+ S+IH  C+  NLE A  L ++M ++G     VT+  LI G C  G  D+A     
Sbjct: 330 VVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 389

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            M Q  I   V+ YN LI GYC  G++
Sbjct: 390 GMKQCRIKPSVVCYNALINGYCMVGRM 416



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 162/353 (45%), Gaps = 27/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   L   + +A   + A+     +   G   N  +    I   C+ G +++A
Sbjct: 325 GIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             A   +K+  +  S+  +N+ + G   + R D   +L H         D++    +I A
Sbjct: 385 LLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +      +EL +Q+LE G++P+   ++ LI   C +K       L   M+     PD
Sbjct: 445 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPD 504

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I+G CK      A  + + + + G +PD V Y+ +I+GL K     +A+++ F
Sbjct: 505 EFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLF 564

Query: 329 EMIHKGLLPNEYTYNSMIH---------------GYCRIDNLEEAKRLHKEMLDKGYGET 373
           ++ H+  +P    Y++++H               G+C    + EA ++++ MLD+ +   
Sbjct: 565 KLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLD 624

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              Y+ LI G C  G   +A    ++M Q G   +  +  +LI+G  + G +V
Sbjct: 625 GSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVV 677


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG I +A   F   K+        T  + L   +K     LVW  Y +++E GY
Sbjct: 73  ITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFYKEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  +  EA  +F ++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G L  A  ++ +M+++G  P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+ L E M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVD 364


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 142/290 (48%), Gaps = 9/290 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I  LCE+G I EA   F+ + E     +++T+   +       R      L++++ E G 
Sbjct: 271 IHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGC 330

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C + K+ E  ++L ++ E GL+P    +N LI  +C++       E
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M + +  P+  TY E+I GLCK RK  +A  + N + ER   P  + Y ++IHG C
Sbjct: 391 ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQC 450

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K+  L  A ++   M   GL+P+++TY+  I   C+   +EEA  L   +  KG     V
Sbjct: 451 KVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKANEV 510

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            Y  LI G C  G+ D AY L E M       +  TYN LI+G CKE K+
Sbjct: 511 IYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKM 560



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 144/303 (47%), Gaps = 11/303 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN ++  + I  LC+   ++EA    S++ E G+  S+ T+N+ + G  K    D  
Sbjct: 329 GCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDA 388

Query: 193 WKLYHDLIESGY----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           +++  DL+ES            LI   C   KV +   LL ++LE  L P    +N LI 
Sbjct: 389 FEIL-DLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIH 447

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C+  +      LL  M      PD +TY   I+ LCK  +  EA  +F+ +K +G   
Sbjct: 448 GQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKGVKA 507

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + V+YT +I G CK+G +  A  +   M++   LPN YTYN +I G C+   ++EA  L 
Sbjct: 508 NEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLV 567

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            +ML  G   T VTY  LI  +   G  D A  +F  M   G   DV TY   +  Y  +
Sbjct: 568 AKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQ 627

Query: 423 GKI 425
           G +
Sbjct: 628 GML 630



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 156/329 (47%), Gaps = 12/329 (3%)

Query: 107 VSCNVLFDSLVEARAFKVAMD-FLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           VS   L   L EA     A+  F D T     P   +  + I  L  SG   EA   F++
Sbjct: 265 VSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNE 324

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           +KE G   ++ T+   + G  K ++ D   K+  ++ E G          LI  +C +G 
Sbjct: 325 MKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGM 384

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + + +E+L  +  +   P    +N+LI   C+K+   +   LL+ M+ R  +P   TY  
Sbjct: 385 IDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G CK      AYR+ + + E G VPD   Y+  I  LCK G + +A  ++  +  KG
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +  NE  Y ++I GYC++  ++ A  L + ML+      + TYN LI GLC   +  EA 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEAS 564

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            L  +M   G+   V+TY  LI    K+G
Sbjct: 565 SLVAKMLTMGVKPTVVTYTILIGEMLKDG 593



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 177/406 (43%), Gaps = 40/406 (9%)

Query: 53  TKPRWEQ--TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN 110
           ++P W++  +L   +PS     P           +   ++ FF W+    GF  ++ S +
Sbjct: 49  SRPNWQKHPSLRKLLPSLT---PSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYS 105

Query: 111 VLFDSLVEARAFKVAMDF-----------------------LDSTG---FSPNPNSLELY 144
            + + L+ AR   VA                          +++ G   F P        
Sbjct: 106 SMLNILIRARLLGVAEKIRISMIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTI 165

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           +  L +  LI+E    + +L    +  +I T+N+ + G  KI            ++++G 
Sbjct: 166 LMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGL 225

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C +  V   YE+   + + G      ++  LI   CE        +
Sbjct: 226 HPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALK 285

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M   N  P   TY  +I  L  S +++EA  +FN++KE+G  P+   YT +I GLC
Sbjct: 286 LFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLIDGLC 345

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   + +ARKM  EM  KGL+P+  TYN++I GYC+   +++A  +   M     G  T 
Sbjct: 346 KENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESNSCGPNTR 405

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           TYN LI GLC   +  +A  L  +M ++ +   +ITYN+LI G CK
Sbjct: 406 TYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNSLIHGQCK 451



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 140/345 (40%), Gaps = 47/345 (13%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
            SP L++ N L     +    + A   +  ++  G  P+  +  ++I  LC+ G +EEA 
Sbjct: 435 LSPSLITYNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAG 494

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             F  +K  GV  +   + +                          LI  +C  GK+   
Sbjct: 495 TLFDSVKAKGVKANEVIYTA--------------------------LIDGYCKVGKIDVA 528

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           Y LL ++L D  +P +  +N LI   C++K     S L+  M+     P   TY  +I  
Sbjct: 529 YSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGE 588

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           + K      A +VFN +   GY PD   YT  +H     G L +   +  +M  +G+LP+
Sbjct: 589 MLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPD 648

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE------ 392
             TY  +I GY R+     A    K M+D G   +    + LI  L    R  E      
Sbjct: 649 LVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIG 708

Query: 393 ------------AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                       A  LFE+M + G   DV  Y  LI G+C++ ++
Sbjct: 709 IDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERL 753



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 78/351 (22%), Positives = 146/351 (41%), Gaps = 30/351 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G   + V    L D   +     VA   L+   +    PN  +  + I+ LC+   ++EA
Sbjct: 504 GVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNVLIEGLCKEKKMKEA 563

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +K+  MGV  ++ T+   +   +K    D   K+++ ++  GY          + A
Sbjct: 564 SSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHA 623

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           + + G + E  +++ ++ E+G++P+   +  LI  +       R  + L  MV     P 
Sbjct: 624 YFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGCKPS 683

Query: 269 NFTYEEVINGLCKSRKRLE------------------AYRVFNDLKERGYVPDTVMYTTV 310
            +    +I  L    +  E                  A ++F  + E G   D  +Y  +
Sbjct: 684 LYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGAL 743

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I G C+   L +A+ +   M  +G+ P+E  YNS++   C++    EA RL   M++ G 
Sbjct: 744 IAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGL 803

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                +Y  L+ GL + G  ++A  +F  +   G   D + +  LI G  K
Sbjct: 804 LPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAWKVLIDGLLK 854



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 173/403 (42%), Gaps = 38/403 (9%)

Query: 33  TKESQQLYTEIAKQVCKITRTKPRWE--QTLLSD--IP-SFNFNDPLFFREFLKQQNNVL 87
            K ++ +YT +    CK+ +    +   + +L+D  +P S+ +N  +      K++    
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYN--VLIEGLCKEKKMKE 562

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELY 144
            S    + L    G  P +V+  +L   +++  AF  A+   +   S G+ P+  +   +
Sbjct: 563 ASSLVAKMLT--MGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           +      G++EE     +K+ E G+   + T+   + G  ++  T   +     ++++G 
Sbjct: 621 LHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGC 680

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI+   ++ ++ E         E G+   ++  N L         +    +
Sbjct: 681 KPSLYIVSILIKNLSHENRMKETRS------EIGI---DSVSNTL--------EYEIALK 723

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   MV      D   Y  +I G C+  +  EA  + + +KERG  P   +Y +++   C
Sbjct: 724 LFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC 783

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K+G   +A ++   M+  GLLP   +Y  ++ G     + E+AK +   +L  GY    V
Sbjct: 784 KLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEV 843

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +  LI GL      DE   L + M +KG   + +TY+ LI+G
Sbjct: 844 AWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEG 886



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 85/190 (44%), Gaps = 3/190 (1%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +I   C  ++   V E+   M A       P    Y  ++  L K     E   V+ +L 
Sbjct: 127 MIKSCCSIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELL 186

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                P+   +  +++G CK+G + +A     +++  GL P+ +TY S+I G+CR   ++
Sbjct: 187 NNQISPNIYTFNAMVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVD 246

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A  +   M  KG     V+Y  LI GLC  GR +EA  LF +M +      V TY  LI
Sbjct: 247 NAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLI 306

Query: 417 QGYCKEGKIV 426
                 G+ V
Sbjct: 307 YALSGSGRKV 316



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P    YN+++    +   ++E K ++ E+L+        T+N ++ G C  G   EA   
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             ++ Q G+  D  TY +LI G+C+   + N
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDN 247


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/333 (29%), Positives = 170/333 (51%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N +         F   +V    +   G  P+  +   +I  LC+ G +EEA
Sbjct: 246 GVKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEA 305

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKID-------RTDLVWK-LYHDLIESGYLIQA 208
                K+ E G+  +  T+N+ + G C K D       R +++ K +   L+     I A
Sbjct: 306 SGLICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHA 365

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G++ +   +++++ E G++P+    N LI+ +C   +  R   LL  MV +   P 
Sbjct: 366 LFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPT 425

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I  L K  +  EA  +F+ +++ G +PD +++  +I G C  G +  A ++  
Sbjct: 426 LVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLK 485

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM +  +LP+E TYN+++ GYCR   +EEA++L  EM  +G     ++YNTLI+G    G
Sbjct: 486 EMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRG 545

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +A+ + +EM   G    ++TYN LIQG CK
Sbjct: 546 DMKDAFRVRDEMMTTGFDPTILTYNALIQGLCK 578



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 108/363 (29%), Positives = 155/363 (42%), Gaps = 79/363 (21%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-- 199
           +L ++  CE     EA   F  +KE G   +I+T N  L   +K++RT + W LY ++  
Sbjct: 150 DLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMFR 209

Query: 200 --IESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             I S       +I   C +GK+ +  E +  +   G+ P    +N +I   C +  F R
Sbjct: 210 MNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQR 269

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +  TM  +   PD +TY   I+GLCK  +  EA  +   + E G VP+ V Y  +I 
Sbjct: 270 ARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALID 329

Query: 313 GLCKMGWL-----------------------------------GDARKMWFEMIHKGLLP 337
           G C  G L                                   GDA  M  EM  KG++P
Sbjct: 330 GYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMP 389

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY-------------------- 377
           +  T+N +I+GYCR  + + A  L  EM+ KG   T VTY                    
Sbjct: 390 DAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALF 449

Query: 378 ---------------NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                          N LI G C +G  D A+ L +EM    +  D ITYNTL+QGYC+E
Sbjct: 450 SKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCRE 509

Query: 423 GKI 425
           GK+
Sbjct: 510 GKV 512



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 162/332 (48%), Gaps = 12/332 (3%)

Query: 106 LVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
           L + N++ + L +    K A +F   +++ G  PN  +    I   C  G  + A   F 
Sbjct: 216 LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLRGKFQRARVIFQ 275

Query: 163 KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDG 213
            +K+ G+     T+NS + G  K  R +    L   ++E G          LI  +CN G
Sbjct: 276 TMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTYNALIDGYCNKG 335

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
            + + Y    +++  G++     +N  I     +   G    ++  M  +   PD  T+ 
Sbjct: 336 DLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHN 395

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +ING C+      A+ + +++  +G  P  V YT++I+ L K   + +A  ++ ++  +
Sbjct: 396 ILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQE 455

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           GLLP+   +N++I G+C   N++ A +L KEM +       +TYNTL+ G C  G+ +EA
Sbjct: 456 GLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEA 515

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             L +EM ++GI  D I+YNTLI GY K G +
Sbjct: 516 RQLLDEMKRRGIKPDHISYNTLISGYSKRGDM 547



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/239 (35%), Positives = 115/239 (48%), Gaps = 5/239 (2%)

Query: 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           DR D    L  DL     L++A+C   K +E  E    + E G VP     N+++S F +
Sbjct: 139 DRVDAKTTLIFDL-----LVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLK 193

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    L   M   N     +T+  +IN LCK  K  +A      ++  G  P+ V 
Sbjct: 194 LNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVT 253

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y T+IHG C  G    AR ++  M  KGL P+ YTYNS I G C+   LEEA  L  +ML
Sbjct: 254 YNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKML 313

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + G     VTYN LI G C  G  D+AY   +EM  KGI   ++TYN  I     EG++
Sbjct: 314 EGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRM 372



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 18/299 (6%)

Query: 101 GFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P+ V+ N L D       L +A A++   D + S G   +  +  L+I  L   G +
Sbjct: 316 GLVPNAVTYNALIDGYCNKGDLDKAYAYR---DEMISKGIMASLVTYNLFIHALFMEGRM 372

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            +A     +++E G+     T N  + G  +       + L  +++  G          L
Sbjct: 373 GDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSL 432

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I       ++ E   L  ++ ++GL+P+   FN LI   C   N  R  +LL  M     
Sbjct: 433 IYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKV 492

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  ++ G C+  K  EA ++ +++K RG  PD + Y T+I G  K G + DA +
Sbjct: 493 LPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFR 552

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +  EM+  G  P   TYN++I G C+    E A+ L KEM+ KG      TY ++I  +
Sbjct: 553 VRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAM 611



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 72/300 (24%), Positives = 132/300 (44%), Gaps = 37/300 (12%)

Query: 61  LLSDIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA 119
           +++ + ++N F   LF    +   +N++  +R         G  PD V+ N+L +     
Sbjct: 352 IMASLVTYNLFIHALFMEGRMGDADNMIKEMR-------EKGMMPDAVTHNILINGYCRC 404

Query: 120 RAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
              K A   LD     G  P   +    I  L +   ++EA   FSK+++ G+   I  +
Sbjct: 405 GDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVF 464

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           N+                          LI   C +G +   ++LL+++    ++P+   
Sbjct: 465 NA--------------------------LIDGHCANGNIDRAFQLLKEMDNMKVLPDEIT 498

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N L+  +C +       +LL  M  R   PD+ +Y  +I+G  K     +A+RV +++ 
Sbjct: 499 YNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMM 558

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G+ P  + Y  +I GLCK      A ++  EM+ KG+ P++ TY S+I     +D+LE
Sbjct: 559 TTGFDPTILTYNALIQGLCKNQEGEHAEELLKEMVSKGITPDDSTYLSIIEAMETVDDLE 618



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 3/137 (2%)

Query: 291 VFNDL---KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           +F++L   ++R     T+++  ++   C++    +A + ++ +  KG +PN  T N M+ 
Sbjct: 130 IFDELALARDRVDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLS 189

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            + +++  + A  L+ EM       +  T+N +I  LC  G+  +A      M   G+  
Sbjct: 190 LFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKP 249

Query: 408 DVITYNTLIQGYCKEGK 424
           +V+TYNT+I G+C  GK
Sbjct: 250 NVVTYNTIIHGHCLRGK 266


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 160/339 (47%), Gaps = 14/339 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G   +  + N+L +S         AF V  D L   G+ P+  +    I+ LC  G I 
Sbjct: 83  FGIPHNTYTLNILINSFCHLNRLGFAFSVLGDIL-KLGYQPSTATFTTLIRGLCVEGKIG 141

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLI 206
           EA   F K+   G    + T+ + + G  K+  T    +    +         +    +I
Sbjct: 142 EALQLFDKMTGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTII 201

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            + C D +++E   L   +L  G+ P N  ++ LI   C   ++     L + M+ R   
Sbjct: 202 DSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIM 261

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  T+  +++ LCK    ++A+ V + + +    PD V Y +++ G C    +G    +
Sbjct: 262 PDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNV 321

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+ KG +P+  +Y ++I+GYC+I  +++A  L +EM  +G    TVTYNTLI GLC 
Sbjct: 322 FDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCH 381

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GR  +A  LF EM   G   D++TY  L    CK  ++
Sbjct: 382 VGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRL 420



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 154/334 (46%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + L  S+   + +   +     +DS G   N  +L + I   C    +  AF  
Sbjct: 52  PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 111

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
              + ++G   S  T+ + + G     +     +L+          D++  G LI   C 
Sbjct: 112 LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 171

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G  S     LR + +    P    ++ +I   C+ +       L   M+A+  +P+NFT
Sbjct: 172 VGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFT 231

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLC      EA R+F  +  R  +PD + + T++  LCK G +  A  +   MI
Sbjct: 232 YSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMI 291

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              L P+  TYNS++ G+C    + +   +   M+ KG   + ++Y TLI G C     D
Sbjct: 292 QSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMD 351

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  LFEEM+Q+G+  D +TYNTLI G C  G++
Sbjct: 352 KAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 385



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 143/286 (50%), Gaps = 12/286 (4%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGY 204
           I++A   F+++  M    SI  ++  L    ++     V  LY         H+      
Sbjct: 35  IDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNI 94

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI +FC+  ++   + +L  +L+ G  P    F  LI   C +   G   +L   M    
Sbjct: 95  LINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEG 154

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +INGLCK      A R    +++R   P  V+Y+T+I  LCK   L +A 
Sbjct: 155 FQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEAL 214

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ +M+ KG+ PN +TY+S+IHG C + + +EA RL   M+ +      +T+NTL+  L
Sbjct: 215 SLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDAL 274

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC---KEGKIVN 427
           C  G   +A+++ + M Q  +  DV+TYN+L+ G+C   + GK VN
Sbjct: 275 CKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVN 320



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+++   L + L +      A+ FL S       P        I  LC+   + EA
Sbjct: 154 GFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQLTEA 213

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQA 208
              FS +   G+  +  T++S + G          I++    +  K+  D +    L+ A
Sbjct: 214 LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDA 273

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V + + ++  +++  L P+   +N L+   C +   G+   +  TMV +   P 
Sbjct: 274 LCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGCVPS 333

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +   +A  +F ++ ++G +PDTV Y T+IHGLC +G L DA  ++ 
Sbjct: 334 VISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 393

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  +    C+   L EA  L K +           Y+ ++ G+C  G
Sbjct: 394 EMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAG 453

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF +++ KG+  DV TY  +I G C++G
Sbjct: 454 ELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQG 488



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 137/298 (45%), Gaps = 11/298 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWK 194
           P+  +    +  LC+ G++ +A      + +  +   + T+NS + G C++ +    V  
Sbjct: 262 PDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTV-N 320

Query: 195 LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           ++  ++  G          LI  +C    + +   L  ++ + GL+P+   +N LI   C
Sbjct: 321 VFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLC 380

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
                     L H MV   + PD  TY  + + LCK+ +  EA  +   ++     PD  
Sbjct: 381 HVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIH 440

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           +Y+ V+ G+C+ G L  AR ++ ++  KGL P+  TY  MI+G C+   L EA +L  EM
Sbjct: 441 IYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 500

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            + G      TYN +  G   +  T  A  LF+EM  +G   DV T   L++    +G
Sbjct: 501 DENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDG 558



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 72/251 (28%), Positives = 113/251 (45%), Gaps = 35/251 (13%)

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           N   + +   L  ++L     P    F+KL++     K++  V  L   M +     + +
Sbjct: 31  NVNTIDDALSLFNRMLRMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTY 90

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T   +IN  C   +   A+ V  D+ + GY P T  +TT+I GLC  G +G+A +++ +M
Sbjct: 91  TLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKM 150

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDN-----------------------------------L 355
             +G  P+  TY ++I+G C++ N                                   L
Sbjct: 151 TGEGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRNCRPTVVVYSTIIDSLCKDRQL 210

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA  L  +ML KG      TY++LI GLC+ G   EA  LF  M  + I  D +T+NTL
Sbjct: 211 TEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTL 270

Query: 416 IQGYCKEGKIV 426
           +   CKEG +V
Sbjct: 271 VDALCKEGMVV 281



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 139/326 (42%), Gaps = 13/326 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLV-EARAFKV--AMDFLDSTGFSPNPNSLELYI 145
           +IR F +   H    PD ++ N L D+L  E    K    +D +  +   P+  +    +
Sbjct: 248 AIRLF-YAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLM 306

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C    + +    F  +   G   S+ ++ + + G  KI   D    L+ ++ + G  
Sbjct: 307 DGHCLRSEMGKTVNVFDTMVRKGCVPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQGLI 366

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI   C+ G++ +   L  +++  G +P+   +  L    C+         L
Sbjct: 367 PDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVL 426

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  +   N  PD   Y  V++G+C++ +   A  +F+ L  +G  PD   YT +I+GLC+
Sbjct: 427 LKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQ 486

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L +A K++ EM   G  PN  TYN +  G+ R +    A +L +EML +G+     T
Sbjct: 487 QGLLAEASKLFGEMDENGCSPNACTYNLITRGFLRNNETLRAIQLFQEMLSRGFSIDVST 546

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQ 402
              L+  L   G       +  E  Q
Sbjct: 547 TTLLVEMLSDDGLDQSVKQILCEFVQ 572


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 167/338 (49%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G + DLV+ N+L +   +      +F V  + L   G+ PN  +L   I+ LC  G I +
Sbjct: 86  GIASDLVTFNILINCFSQLGHTHFSFSVFANIL-KKGYEPNAITLTTLIKGLCLKGQIHQ 144

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A     K+  +G   +   + + + G  K+ +T    +L           +++    +I 
Sbjct: 145 ALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIID 204

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C    V+E ++L  +++  G+ P+   ++ LIS FC          L + M++    P
Sbjct: 205 SMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINP 264

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +T+  +++G CK  +  EA  V   + ++G  PD V Y +++ G C +  +  A+ ++
Sbjct: 265 DVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIF 324

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G+  N  +YN MI+G+C+I  ++EA  L KEM  K      VTYN+LI GLC  
Sbjct: 325 NTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKS 384

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+   A  L +EM  +G+  D ITYN+++   CK  ++
Sbjct: 385 GKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQV 422



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 166/347 (47%), Gaps = 17/347 (4%)

Query: 91  RFFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLE 142
           +  Q LH H      GF  + V    L + L +      A+  L   D     PN     
Sbjct: 141 QIHQALHFHDKVVALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYN 200

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             I  +C+  L+ EAF  +S++   G+   + T+++ + G   + + +    L++ +I  
Sbjct: 201 TIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISE 260

Query: 203 ---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
                      L+  FC +G+V E   +L  +++ G+ P+   +  L+  +C  K   + 
Sbjct: 261 EINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKA 320

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             + +TM       +  +Y  +ING CK +K  EA  +F ++  +  +PD V Y ++I G
Sbjct: 321 KSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDG 380

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G +  A K+  EM  +G+  ++ TYNS++   C+   +++A  L  +M D+G    
Sbjct: 381 LCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPD 440

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             TY  LI GLC  GR  +A ++FE++  KG    V TY  +IQG+C
Sbjct: 441 MYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFC 487



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/364 (26%), Positives = 172/364 (47%), Gaps = 24/364 (6%)

Query: 85  NVLLSIRFFQWLHSHYGFS-----------PDLVSCNVLFDSLVEARAFKVAMDFLD--- 130
           N+L++  F Q  H+H+ FS           P+ ++   L   L        A+ F D   
Sbjct: 95  NILINC-FSQLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVV 153

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           + GF  N       I  LC+ G    A     ++    V  ++  +N+ +    K+   +
Sbjct: 154 ALGFHLNKVCYGTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVN 213

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
             + LY +++  G          LI  FC  GK+++   L  +++ + + P+   F+ L+
Sbjct: 214 EAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILV 273

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             FC++        +L  M+ +   PD  TY  +++G C  ++  +A  +FN + + G  
Sbjct: 274 DGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVT 333

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
            +   Y  +I+G CK+  + +A  ++ EM  K ++P+  TYNS+I G C+   +  A +L
Sbjct: 334 ANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKL 393

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             EM D+G     +TYN+++  LC + + D+A  L  +M  +GI  D+ TY  LI G CK
Sbjct: 394 VDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCK 453

Query: 422 EGKI 425
            G++
Sbjct: 454 GGRL 457



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 142/318 (44%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ + L            A+   +   S   +P+  +  + +   C+ G ++EA
Sbjct: 226 GISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEA 285

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + + G+   + T+ S + G   + + +    +++ + + G          +I  
Sbjct: 286 KNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMING 345

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   KV E   L +++    ++P+   +N LI   C+        +L+  M  R    D
Sbjct: 346 FCKIKKVDEAMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHD 405

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+ +  +A  +   +K+ G  PD   YT +I GLCK G L DA+ ++ 
Sbjct: 406 KITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFE 465

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ KG     YTY  MI G+C  D  ++A  L  +M D G      TY  +I  L    
Sbjct: 466 DLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKD 525

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D A  L  EM  +G+ 
Sbjct: 526 ENDMAEKLLREMIARGLL 543



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/202 (28%), Positives = 97/202 (48%)

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++L     P    F K++    +   +     L   M     A D  T+  +IN   +  
Sbjct: 46  RILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQLG 105

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
               ++ VF ++ ++GY P+ +  TT+I GLC  G +  A     +++  G   N+  Y 
Sbjct: 106 HTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVCYG 165

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++I+G C++     A +L + +  K      V YNT+I  +C     +EA+ L+ EM  K
Sbjct: 166 TLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSK 225

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           GI  DV+TY+ LI G+C  GK+
Sbjct: 226 GISPDVVTYSALISGFCILGKL 247



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%)

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           FN +      P    +  ++  L K+     A  +  EM   G+  +  T+N +I+ + +
Sbjct: 44  FNRILNINPTPPIFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFSQ 103

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           + +   +  +   +L KGY    +T  TLI GLCL G+  +A H  +++   G   + + 
Sbjct: 104 LGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKVC 163

Query: 412 YNTLIQGYCKEGK 424
           Y TLI G CK G+
Sbjct: 164 YGTLINGLCKVGQ 176


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 158/330 (47%), Gaps = 29/330 (8%)

Query: 97  HSH---YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           H H   +GF  D VS  +L + L +    + AM  L  T  + +       I  LC+   
Sbjct: 103 HDHVVAHGFKLDQVSYAILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKF 162

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           + +A+  +S++   G+F ++ T++                           L+ A C D 
Sbjct: 163 VTDAYRLYSEMIAKGIFPNVYTFS--------------------------ILVDALCKDR 196

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           K  +   LL  +++ G+ P    +  ++  +C      +   + + MV     P+ + Y 
Sbjct: 197 KGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYN 256

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +INGLCK ++  EA  +F ++  +   PD V Y  +I GLCK+G +  + ++  EM   
Sbjct: 257 IIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSI 316

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G   +  TYNS++H  C+  +L++A  L KE+ D+G      TY TLI GLC  GR ++A
Sbjct: 317 GKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDA 376

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           Y +F+E+  +G    V TYN +I G CK+G
Sbjct: 377 YVIFQEILTEGYHITVWTYNVMINGLCKKG 406



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 166/369 (44%), Gaps = 13/369 (3%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA 125
           P   FN  L     L + N+   +I  F+ L  + G  P +V+  +L +           
Sbjct: 9   PILQFNHIL---ASLVKINHYPTAISLFRQLEFN-GIKPSIVTLTILMNCYCHTGGITFL 64

Query: 126 MDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
              L      G+ PN  +    I+ +C +G   EA      +   G      ++   + G
Sbjct: 65  FSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAILMNG 124

Query: 183 CIKIDRTDLVWKLYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             K+  T    ++        D++    +I + C    V++ Y L  +++  G+ P    
Sbjct: 125 LCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYT 184

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           F+ L+   C+ +   +   LL  M+ +   P+  TY  +++G C   +  +A  +FN + 
Sbjct: 185 FSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMV 244

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           + G  P+   Y  +I+GLCK   + +A  ++ EM  K + P+  TYN +I G C++  + 
Sbjct: 245 QEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKIS 304

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            +  L  EM   G     +TYN+L+  LC +   D+A  L +E+  +GI  +V TY TLI
Sbjct: 305 TSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLI 364

Query: 417 QGYCKEGKI 425
            G CK+G++
Sbjct: 365 DGLCKDGRL 373



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/318 (23%), Positives = 151/318 (47%), Gaps = 14/318 (4%)

Query: 103 SPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           + D+V  + + DSL + +    A+++  + + + G  PN  +  + +  LC+    ++A 
Sbjct: 144 NADVVMYSTIIDSLCKGKFVTDAYRLYSEMI-AKGIFPNVYTFSILVDALCKDRKGKQAM 202

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
              + + + GV  ++ T+ + + G   +++ +    +++ +++ G          +I   
Sbjct: 203 NLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGL 262

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C   +V E   L +++    + P+   +N LI   C+        EL+  M +  +  D 
Sbjct: 263 CKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDI 322

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++ LCK+    +A  +  ++K++G  P+   YTT+I GLCK G L DA  ++ E
Sbjct: 323 ITYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQE 382

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++ +G     +TYN MI+G C+    +EA  L   M D       V+Y T+I  L   G 
Sbjct: 383 ILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEKGE 442

Query: 390 TDEAYHLFEEMAQKGIFR 407
           T +   L   M  +G+ +
Sbjct: 443 TVKTNKLLCAMIVRGLSK 460



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/303 (23%), Positives = 107/303 (35%), Gaps = 102/303 (33%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +L+    P    FN +++   +  ++     L   +      P   T   ++N  C +  
Sbjct: 1   MLQISPTPPILQFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTGG 60

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVI--------------------------------- 311
               + +   + + GY P+++ +TT+I                                 
Sbjct: 61  ITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYAI 120

Query: 312 --HGLCKMGWLGDA----RKMWF----------------------------EMIHKGLLP 337
             +GLCKMG    A    RK W                             EMI KG+ P
Sbjct: 121 LMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIFP 180

Query: 338 NEYT-----------------------------------YNSMIHGYCRIDNLEEAKRLH 362
           N YT                                   Y +++ GYC ++ + +A  + 
Sbjct: 181 NVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIF 240

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+ +G       YN +I GLC   R DEA +LF+EM  K I  DV+TYN LI G CK 
Sbjct: 241 NVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKL 300

Query: 423 GKI 425
           GKI
Sbjct: 301 GKI 303


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 167/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D VS   L + L +      A+  L   D     PN     + I  +C++ L+ +A
Sbjct: 170 GFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDA 229

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES--------GYLIQA 208
           F  +S++    +     T NS + G CI     + V  L+  ++E+          L+ A
Sbjct: 230 FDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDA 289

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +GKV E   +L   ++  ++ +   +N L+  +C  K   +  ++  +M +R    +
Sbjct: 290 FCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIAN 349

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +INGLCK +   EA  +F +++ R  +P+ V Y ++I GL K+G +    K+  
Sbjct: 350 VQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVD 409

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G  PN  TYNS++   C+  ++++A  L   + D+G      TY  LI GLC  G
Sbjct: 410 EMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSG 469

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + ++A  +FE++  KG   DV TY  +IQG+C +G
Sbjct: 470 KLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKG 504



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+ ++ N L   L        A++F D   + GF  +  S    I  LC+ G I  A
Sbjct: 135 GFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAA 194

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
                ++    V  +   +N  +    K    +  + LY  ++             LI  
Sbjct: 195 LQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYG 254

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++ E   LL +++ + + P    F+ L+  FC++        +L   + ++   D
Sbjct: 255 FCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILD 314

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C  ++  +A  +F+ +  RG + +   YTT+I+GLCK+  + +A  ++ 
Sbjct: 315 VVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFE 374

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  + ++PN  TYNS+I G  ++  +    +L  EM D+G     +TYN+++  LC + 
Sbjct: 375 EMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNH 434

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D+A  L   +  +GI  D+ TY  LI+G C+ GK+
Sbjct: 435 HVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKL 471



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 111/223 (49%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D      LI  F   G  S  + +  ++L+ G  P    FN LI   C K +  +     
Sbjct: 104 DFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFH 163

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             +VA+    D  +Y  +INGLCK  +   A ++   +  +   P+ VMY  +I  +CK 
Sbjct: 164 DKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKA 223

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             + DA  ++ +M+ K + P+++T NS+I+G+C +  L+EA  L  +M+ +       T+
Sbjct: 224 KLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTF 283

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           + L+   C  G+  EA  +     +K I  DV+TYN+L+ GYC
Sbjct: 284 SILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYC 326



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 134/319 (42%), Gaps = 12/319 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD  +CN L          K A+  L        +P   +  + +   C+ G ++EA 
Sbjct: 241 ISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFSILVDAFCKEGKVKEAK 300

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
                  +  +   + T+NS + G   +   +    ++  +   G          +I   
Sbjct: 301 MMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGL 360

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C    V E   L  ++    ++P    +N LI    +      V +L+  M  R + P+ 
Sbjct: 361 CKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNI 420

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++ LCK+    +A  +  +LK++G  PD   YT +I GLC+ G L DA+K++ +
Sbjct: 421 ITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFED 480

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++ KG   + YTY  MI G+C     + A  L  +M D G      TY  +I  L     
Sbjct: 481 LLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDE 540

Query: 390 TDEAYHLFEEMAQKGIFRD 408
            D A  L  EM  +G+  +
Sbjct: 541 NDMAEKLLREMIARGLLDE 559



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 95/194 (48%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FNK++S   + K+      L   M       D FT+  +IN   +      ++ V
Sbjct: 68  PPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNILINCFSQLGLNSLSFSV 127

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F  + ++G+ P+ + + T+I GLC  G +  A     +++ +G   ++ +Y ++I+G C+
Sbjct: 128 FGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQGFHLDQVSYGTLINGLCK 187

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +  +  A +L K +  K      V YN +I  +C     ++A+ L+ +M  K I  D  T
Sbjct: 188 VGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFT 247

Query: 412 YNTLIQGYCKEGKI 425
            N+LI G+C  G++
Sbjct: 248 CNSLIYGFCIMGQL 261



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 93/190 (48%), Gaps = 13/190 (6%)

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N LIS F         + LLH    +N  P    + ++++ L K++    A  +   ++ 
Sbjct: 51  NNLISSF---------NSLLH---HKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMEL 98

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G V D   +  +I+   ++G    +  ++ +++ KG  PN  T+N++I G C   ++ +
Sbjct: 99  NGIVSDFFTFNILINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQ 158

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A   H +++ +G+    V+Y TLI GLC  GR   A  L + +  K +  + + YN +I 
Sbjct: 159 ALNFHDKVVAQGFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIID 218

Query: 418 GYCKEGKIVN 427
             CK  K+VN
Sbjct: 219 NMCK-AKLVN 227



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 109/250 (43%), Gaps = 13/250 (5%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ N L D     +    A D  DS    G   N  S    I  LC+  +++EA   F
Sbjct: 314 DVVTYNSLMDGYCLVKEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLF 373

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---HD------LIESGYLIQAFCND 212
            +++   +  ++ T+NS + G  K+ +   V KL    HD      +I    ++ A C +
Sbjct: 374 EEMRCRKIIPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKN 433

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
             V +   LL  + + G+ P+   +  LI   C+        ++   ++ +    D +TY
Sbjct: 434 HHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTY 493

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I G C       A  + + +++ G +P+   Y  VI  L +      A K+  EMI 
Sbjct: 494 TVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVILSLFEKDENDMAEKLLREMIA 553

Query: 333 KGLLPNEYTY 342
           +GLL +E +Y
Sbjct: 554 RGLL-DEKSY 562


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 159/329 (48%), Gaps = 16/329 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEM 167
           N++   L  A     A++ L      P PN++     I   C  G ++ A     +++E 
Sbjct: 492 NIMLRHLCSAGKPARALELLRQM---PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRER 548

Query: 168 GVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVS 216
           G     + T+ + + G  K+ R D   K++ +++  G           LI  +C+ GK+ 
Sbjct: 549 GGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD 608

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
                  +++E G+      +N L+             EL+  M  +  APD FTY  +I
Sbjct: 609 TALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILI 668

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG CK     +A  +F ++  RG     V YT +I+ L K G + +  K++ E + +G+ 
Sbjct: 669 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR 728

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   YN++I+ +    N++ A  +  EM  K      VTYNTL+ GLCL GR DEA  L
Sbjct: 729 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 788

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EM ++GI  D++TYNTLI GY  +G +
Sbjct: 789 IDEMTERGIQPDLVTYNTLISGYSMKGDV 817



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 57/372 (15%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+ V+ N +          + A+D +    +  G +PN  +    I   C+ G ++EA  
Sbjct: 517 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 576

Query: 160 AFSKLKEMGVFGSIKT----WNSALLGCIKIDRTDLVWKLYHD-LIESGY---------L 205
            F    EM   G +K     +N+ + G     + D    LY D ++E G          L
Sbjct: 577 VFD---EMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLL 632

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM----- 260
           + A   DG+ +E YEL+ ++   GL P+   +N LI+  C++ N  +  E+   M     
Sbjct: 633 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 692

Query: 261 ------------------------------VARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                                         V R   PD   Y  +IN    S     A+ 
Sbjct: 693 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 752

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  +++++   PD V Y T++ GLC +G + +ARK+  EM  +G+ P+  TYN++I GY 
Sbjct: 753 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYS 812

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
              ++++A R+  EM++KG+  T +TYN LI GLC +G+ D+A ++ +EM + GI  D  
Sbjct: 813 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 872

Query: 411 TYNTLIQGYCKE 422
           TY +LI+G   E
Sbjct: 873 TYISLIEGLTTE 884



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/193 (38%), Positives = 103/193 (53%), Gaps = 6/193 (3%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T FN ++   C      R  ELL  M      P+  TY  VI G C   +   A  +  +
Sbjct: 489 TTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMRE 544

Query: 295 LKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRI 352
           ++ERG + P+   Y TVI G CK+G + +A K++ EM+ KG + P    YN++I GYC  
Sbjct: 545 MRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQ 604

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             L+ A      M+++G   T  TYN L+  L + GR  EAY L EEM  KG+  DV TY
Sbjct: 605 GKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTY 664

Query: 413 NTLIQGYCKEGKI 425
           N LI G+CKEG +
Sbjct: 665 NILINGHCKEGNV 677



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 73/140 (52%), Gaps = 6/140 (4%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+ +F D+        T  +  ++  LC  G    A     E++ +   PN  TYN++I 
Sbjct: 472 AFALFADMFRLRLPLCTTTFNIMLRHLCSAGKPARA----LELLRQMPRPNAVTYNTVIA 527

Query: 348 GYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG-I 405
           G+C    ++ A  + +EM ++ G      TY T+I+G C  GR DEA  +F+EM  KG +
Sbjct: 528 GFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEV 587

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             + + YN LI GYC +GK+
Sbjct: 588 KPEAVMYNALIGGYCDQGKL 607


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 165/341 (48%), Gaps = 20/341 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G +P+LV+ N L D L +A   + A + L+   S+GF P+  +  + +  LC+ G +
Sbjct: 142 SGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRL 201

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           ++A      + + G   S+ T+ + + G  +  R D    ++ +++             L
Sbjct: 202 DKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSL 261

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGL--VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +  +C   +  E      Q + DG+   P    +N L+  +C++     +  +   M  R
Sbjct: 262 VNGYCKSSRTKEA-----QKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACR 316

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  V++GLCK  K  EA+     +   G VPD V Y  +I GL K     +A
Sbjct: 317 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEA 376

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           R++  +MI  G+ P+  TYN+++  +C+ +  ++A  + K M+  G     VTYNTLI+G
Sbjct: 377 RQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 436

Query: 384 LCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEG 423
           L    R  +AY L  EM + G +     TYNT+I   CKEG
Sbjct: 437 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEG 477



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 77/232 (33%), Positives = 122/232 (52%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           K+  D+     LI   C   K  +  E+L ++++ G+ P+   FN ++   C+   F R 
Sbjct: 5   KVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERA 64

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             LL  M  RN  P   TY  +I+GLCK +    A  + ++    G+VPD V Y+ +  G
Sbjct: 65  HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADG 124

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G + +A ++  EM   G  PN  TYN++I G C+    E+A  L + ++  G+   
Sbjct: 125 LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPD 184

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            VTY  ++ GLC  GR D+A  + E M ++G    VITY  L++G C+ G++
Sbjct: 185 VVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRV 236



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 9/270 (3%)

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           + E  V   + T+N  + G  K  +TD   ++ H++++ G          ++   C  GK
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
               + LL  + E    P    +N LIS  C+++N  R   L+   V+    PD  TY  
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           + +GLCK  +  EA+ +  ++   G  P+ V Y T+I GLCK      A ++   ++  G
Sbjct: 121 LADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSG 180

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
            +P+  TY  ++ G C+   L++A ++ + ML +G   + +TY  L+ GLC  GR DEA+
Sbjct: 181 FVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAH 240

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           H+F+EM  K    D + Y +L+ GYCK  +
Sbjct: 241 HIFKEMVSKDCTADALAYVSLVNGYCKSSR 270



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 100/359 (27%), Positives = 157/359 (43%), Gaps = 61/359 (16%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+ + N+L D L +A     A + L      G +P+  +    +  LC++G  E A 
Sbjct: 6   VAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAH 65

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
              + + E     S  T+N+                          LI   C    V   
Sbjct: 66  SLLAVMAERNCRPSCCTYNT--------------------------LISGLCKQQNVDRA 99

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             L+ + +  G VP+   ++ L    C++       EL+  M      P+  TY  +I+G
Sbjct: 100 KTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDG 159

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK+ K  +AY +   L   G+VPD V YT ++ GLCK G L  A KM   M+ +G  P+
Sbjct: 160 LCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPS 219

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--------------GYGETTVT-------- 376
             TY +++ G CR   ++EA  + KEM+ K              GY +++ T        
Sbjct: 220 VITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVD 279

Query: 377 ----------YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                     YN L+ G C  GR DE  ++FE+MA +G   ++ TYN ++ G CK GK+
Sbjct: 280 GIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKV 338



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 163/362 (45%), Gaps = 50/362 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P   + N L   L + +    A   +D   S+GF P+  +  +    LC+ G I+EAF  
Sbjct: 78  PSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 137

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++   G   ++ T+N+ + G  K  +T+  ++L   L+ SG+         ++   C 
Sbjct: 138 VKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCK 197

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT---MVARNRAPD 268
           +G++ +  +++  +L+ G  P    +  L+   C     GRV E  H    MV+++   D
Sbjct: 198 EGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRT---GRVDEAHHIFKEMVSKDCTAD 254

Query: 269 NFTYEEVINGLCKSRKRLEAYRV--------------------------------FNDLK 296
              Y  ++NG CKS +  EA +V                                F D+ 
Sbjct: 255 ALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMA 314

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            RG VP+   Y  V+ GLCK G + +A      M   G +P+  +YN +I G  +    +
Sbjct: 315 CRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPK 374

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA+++  +M+  G     VTYNTL+A  C   R D+A  + + M + G+  D +TYNTLI
Sbjct: 375 EARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLI 434

Query: 417 QG 418
            G
Sbjct: 435 SG 436



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 72/199 (36%), Positives = 107/199 (53%)

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E  + P+   +N LI   C+     + SE+LH MV R   PD  T+  +++GLCK+ K  
Sbjct: 3   ERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFE 62

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
            A+ +   + ER   P    Y T+I GLCK   +  A+ +  E +  G +P+  TY+ + 
Sbjct: 63  RAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILA 122

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G C+   ++EA  L KEM   G     VTYNTLI GLC   +T++AY L E +   G  
Sbjct: 123 DGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFV 182

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DV+TY  ++ G CKEG++
Sbjct: 183 PDVVTYTIIVDGLCKEGRL 201



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 165/338 (48%), Gaps = 17/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N++ D L +      A  FL+S    G  P+  S  + I  L ++   +EA
Sbjct: 317 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEA 376

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ + G+     T+N+ +    K +R D    +  ++I++G          LI  
Sbjct: 377 RQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 436

Query: 209 FCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                ++ + YEL+ ++L +G +V   T +N +I R C++    +   L+  M       
Sbjct: 437 LSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEA 496

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY   I+ LCK  +  EA  +   L E   + D V YTTVI GLCK   L  A K+ 
Sbjct: 497 NTVTYNIFIDRLCKEGRLDEASSL---LSEMDTLRDEVSYTTVIIGLCKAEQLDRASKLA 553

Query: 328 FEMIH-KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
            EM+  KGL    +T+N +I  + +   L+EA  L + M+ +G   + +TYN +I  LC 
Sbjct: 554 REMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCK 613

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             + D+A+ LF+EMA +GI    ++Y  LI G C +G+
Sbjct: 614 LDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGR 651



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 146/305 (47%), Gaps = 16/305 (5%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +  + +  LC+ G ++EAF     +   G    + ++N  + G  K  +    
Sbjct: 317 GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEA 376

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++   +I++G          L+  FC + +  +   +L+ +++ G+ P+N  +N LIS 
Sbjct: 377 RQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISG 436

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNF--TYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             +    G   EL+H M+ RN    +   TY  +I+ LCK     +A  + + +   G  
Sbjct: 437 LSQTNRLGDAYELMHEML-RNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVE 495

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
            +TV Y   I  LCK G L +A  +  EM     L +E +Y ++I G C+ + L+ A +L
Sbjct: 496 ANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLDRASKL 552

Query: 362 HKEMLD-KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            +EM+  KG   T+ T+N LI       R DEA  L E M Q+G    VITYN +I   C
Sbjct: 553 AREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLC 612

Query: 421 KEGKI 425
           K  K+
Sbjct: 613 KLDKV 617



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 149/325 (45%), Gaps = 18/325 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCL 148
           F + +HS  G  PD+VS N++ D L +A   K A   LD     G  P+  +    +   
Sbjct: 344 FLESMHSA-GCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQF 402

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C+    ++A      + + GV     T+N+ + G  + +R    ++L H+++ +G ++ A
Sbjct: 403 CKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSA 462

Query: 209 ----------FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                      C +G + +   L+  +   G+      +N  I R C++      S LL 
Sbjct: 463 CTTYNTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLS 522

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKM 317
            M   +   D  +Y  VI GLCK+ +   A ++  ++   +G    +  +  +I    K 
Sbjct: 523 EM---DTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKT 579

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             L +A  +   M+ +G  P+  TYN +I   C++D +++A  L  EM  +G   ++V+Y
Sbjct: 580 KRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSY 639

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQ 402
             LI GLC  GR  EA  + EEMA 
Sbjct: 640 TVLIYGLCGQGRGKEALQVLEEMAS 664



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 68/131 (51%)

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + ER   PD   Y  +I GLCK      A +M  EM+ +G+ P+  T+NS++ G C+   
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            E A  L   M ++    +  TYNTLI+GLC     D A  L +E    G   DV+TY+ 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 415 LIQGYCKEGKI 425
           L  G CK G+I
Sbjct: 121 LADGLCKRGRI 131



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 111/266 (41%), Gaps = 47/266 (17%)

Query: 110 NVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N + D L +    K A   MD +   G   N  +  ++I  LC+ G ++EA    S L E
Sbjct: 467 NTIIDRLCKEGCLKQALLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEAS---SLLSE 523

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVL 226
           M       ++ + ++G  K ++ D   KL  +++                          
Sbjct: 524 MDTLRDEVSYTTVIIGLCKAEQLDRASKLAREMVAV------------------------ 559

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             GL   +  FN LI  F + K       LL  MV R  +P   TY  VI  LCK  K  
Sbjct: 560 -KGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVD 618

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A+ +F+++  RG V  +V YT +I+GLC  G   +A ++  EM                
Sbjct: 619 KAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSD------------ 666

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGE 372
              C ID+L + ++L+  +  +G GE
Sbjct: 667 ---CEIDDL-KCRKLYLALRGQGRGE 688


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 159/329 (48%), Gaps = 16/329 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEM 167
           N++   L  A     A++ L      P PN++     I   C  G ++ A     +++E 
Sbjct: 487 NIMLRHLCSAGKPARALELLRQM---PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRER 543

Query: 168 GVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVS 216
           G     + T+ + + G  K+ R D   K++ +++  G           LI  +C+ GK+ 
Sbjct: 544 GGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD 603

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
                  +++E G+      +N L+             EL+  M  +  APD FTY  +I
Sbjct: 604 TALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILI 663

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG CK     +A  +F ++  RG     V YT +I+ L K G + +  K++ E + +G+ 
Sbjct: 664 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR 723

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   YN++I+ +    N++ A  +  EM  K      VTYNTL+ GLCL GR DEA  L
Sbjct: 724 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 783

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EM ++GI  D++TYNTLI GY  +G +
Sbjct: 784 IDEMTERGIQPDLVTYNTLISGYSMKGDV 812



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 57/372 (15%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+ V+ N +          + A+D +    +  G +PN  +    I   C+ G ++EA  
Sbjct: 512 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 571

Query: 160 AFSKLKEMGVFGSIKT----WNSALLGCIKIDRTDLVWKLYHD-LIESGY---------L 205
            F    EM   G +K     +N+ + G     + D    LY D ++E G          L
Sbjct: 572 VFD---EMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLL 627

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM----- 260
           + A   DG+ +E YEL+ ++   GL P+   +N LI+  C++ N  +  E+   M     
Sbjct: 628 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 687

Query: 261 ------------------------------VARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                                         V R   PD   Y  +IN    S     A+ 
Sbjct: 688 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 747

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  +++++   PD V Y T++ GLC +G + +ARK+  EM  +G+ P+  TYN++I GY 
Sbjct: 748 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYS 807

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
              ++++A R+  EM++KG+  T +TYN LI GLC +G+ D+A ++ +EM + GI  D  
Sbjct: 808 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 867

Query: 411 TYNTLIQGYCKE 422
           TY +LI+G   E
Sbjct: 868 TYISLIEGLTTE 879



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 75/194 (38%), Positives = 103/194 (53%), Gaps = 6/194 (3%)

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
            T FN ++   C      R  ELL  M      P+  TY  VI G C   +   A  +  
Sbjct: 483 TTTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFCSRGRVQAALDIMR 538

Query: 294 DLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCR 351
           +++ERG + P+   Y TVI G CK+G + +A K++ EM+ KG + P    YN++I GYC 
Sbjct: 539 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 598

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L+ A      M+++G   T  TYN L+  L + GR  EAY L EEM  KG+  DV T
Sbjct: 599 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 658

Query: 412 YNTLIQGYCKEGKI 425
           YN LI G+CKEG +
Sbjct: 659 YNILINGHCKEGNV 672


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 159/329 (48%), Gaps = 16/329 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEM 167
           N++   L  A     A++ L      P PN++     I   C  G ++ A     +++E 
Sbjct: 118 NIMLRHLCSAGKPARALELLRQM---PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRER 174

Query: 168 GVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVS 216
           G     + T+ + + G  K+ R D   K++ +++  G           LI  +C+ GK+ 
Sbjct: 175 GGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD 234

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
                  +++E G+      +N L+             EL+  M  +  APD FTY  +I
Sbjct: 235 TALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILI 294

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG CK     +A  +F ++  RG     V YT +I+ L K G + +  K++ E + +G+ 
Sbjct: 295 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIR 354

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   YN++I+ +    N++ A  +  EM  K      VTYNTL+ GLCL GR DEA  L
Sbjct: 355 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 414

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EM ++GI  D++TYNTLI GY  +G +
Sbjct: 415 IDEMTERGIQPDLVTYNTLISGYSMKGDV 443



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 57/372 (15%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+ V+ N +          + A+D +    +  G +PN  +    I   C+ G ++EA  
Sbjct: 143 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 202

Query: 160 AFSKLKEMGVFGSIKT----WNSALLGCIKIDRTDLVWKLYHD-LIESGY---------L 205
            F    EM   G +K     +N+ + G     + D    LY D ++E G          L
Sbjct: 203 VFD---EMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLL 258

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM----- 260
           + A   DG+ +E YEL+ ++   GL P+   +N LI+  C++ N  +  E+   M     
Sbjct: 259 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 318

Query: 261 ------------------------------VARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                                         V R   PD   Y  +IN    S     A+ 
Sbjct: 319 RATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 378

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  +++++   PD V Y T++ GLC +G + +ARK+  EM  +G+ P+  TYN++I GY 
Sbjct: 379 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYNTLISGYS 438

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
              ++++A R+  EM++KG+  T +TYN LI GLC +G+ D+A ++ +EM + GI  D  
Sbjct: 439 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 498

Query: 411 TYNTLIQGYCKE 422
           TY +LI+G   E
Sbjct: 499 TYISLIEGLTTE 510



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/195 (40%), Positives = 107/195 (54%), Gaps = 8/195 (4%)

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVF 292
            T FN ++   C      R  ELL  M      P+  TY  VI G C SR R++ A  + 
Sbjct: 114 TTTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFC-SRGRVQAALDIM 168

Query: 293 NDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYC 350
            +++ERG + P+   Y TVI G CK+G + +A K++ EM+ KG + P    YN++I GYC
Sbjct: 169 REMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYC 228

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
               L+ A      M+++G   T  TYN L+  L + GR  EAY L EEM  KG+  DV 
Sbjct: 229 DQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVF 288

Query: 411 TYNTLIQGYCKEGKI 425
           TYN LI G+CKEG +
Sbjct: 289 TYNILINGHCKEGNV 303


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   + N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A   F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A++++ +M+ + LLP+  TYN++I+G C+  +L++A  L  +M  KG     +
Sbjct: 259 KNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVD 370



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ + N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  E   ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DDANEXFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +D+  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML       T TY  +I   C  G   +   
Sbjct: 349 RLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHAPSVVTYNVLMNG 431


>gi|242052075|ref|XP_002455183.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
 gi|241927158|gb|EES00303.1| hypothetical protein SORBIDRAFT_03g005716 [Sorghum bicolor]
          Length = 892

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 170/351 (48%), Gaps = 32/351 (9%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDS 131
           F  + L+++ ++  + R    L    G  P+L +CN L D L + R F+ A      + +
Sbjct: 305 FMVDGLRKRGHIDKAFRLACHL-GELGMVPNLFACNALIDKLCKDRRFREAERLFRGMAN 363

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  PN  +  + I  LC+ G++++A C F +++E G+  ++  +NS             
Sbjct: 364 RGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGIRVTVYPYNS------------- 410

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                        LI  +C      +   LL +++E GL P   +++ LI+  C K +  
Sbjct: 411 -------------LINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLA 457

Query: 252 RVSELLHTMVARNRAPDN-FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
              EL H  +ARN    N +T+  +I+G CK     EA R+F+ + +   VP+ V +  +
Sbjct: 458 SAMEL-HREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVM 516

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I G C++G +  A +++ +M+ +GL P+ YTY S+I   C      +AK    ++ +   
Sbjct: 517 IEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTLGAMKAKEFVDDLENNCV 576

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              + +  TL+ G C  GR  E YH+++EM  +G+  D+I++  ++    K
Sbjct: 577 VLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLDLISFTVIVYAALK 627



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 163/330 (49%), Gaps = 13/330 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +  +LF +L++ R F +A D  D       P    +Y   I+  CE   ++ A    +++
Sbjct: 163 ASQILF-ALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIRAYCEIRNLDGARGLLTRM 221

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
           +  GV GS   +N  + G  + +R     ++ + ++E G          L+  FC   ++
Sbjct: 222 ESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEEL 281

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
               E+   +L    VP   + + ++    ++ +  +   L   +      P+ F    +
Sbjct: 282 EMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNAL 341

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ LCK R+  EA R+F  +  RG  P+ V Y  +IH LCK G + DA  M+  M  KG+
Sbjct: 342 IDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKGI 401

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
               Y YNS+I+GYC+ DN  +A+ L  EM++KG   +  +Y+ LIAGLC  G    A  
Sbjct: 402 RVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAME 461

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L  EMA+ G+  +V T+ TLI G+CK+G +
Sbjct: 462 LHREMARNGVSGNVYTFTTLISGFCKDGNM 491



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/306 (26%), Positives = 146/306 (47%), Gaps = 9/306 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           ++S G   +     + +  LC +  + EA    + + E G+     T+ + + G  + + 
Sbjct: 221 MESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVADEVTYRTLVYGFCRTEE 280

Query: 189 TDLVWKLYHDLIE---------SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            ++  ++  D++            +++      G + + + L   + E G+VP   A N 
Sbjct: 281 LEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKAFRLACHLGELGMVPNLFACNA 340

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI + C+ + F     L   M  R   P+  TY  +I+ LCK     +A  +F+ ++E+G
Sbjct: 341 LIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHSLCKRGMMDDALCMFDRMREKG 400

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
                  Y ++I+G C+      AR +  EM+ KGL P+  +Y+ +I G CR  +L  A 
Sbjct: 401 IRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPSAASYSPLIAGLCRKGDLASAM 460

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            LH+EM   G      T+ TLI+G C  G  DEA  LF++M    +  + +T+N +I+GY
Sbjct: 461 ELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFDKMIDSSVVPNEVTFNVMIEGY 520

Query: 420 CKEGKI 425
           C+ G +
Sbjct: 521 CRVGNV 526



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 162/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D V+   L          ++A++  D   S  F P+  S    +  L + G I++A
Sbjct: 260 GIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKA 319

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     L E+G+  ++   N+ +    K  R     +L+  +   G          LI +
Sbjct: 320 FRLACHLGELGMVPNLFACNALIDKLCKDRRFREAERLFRGMANRGLEPNEVTYAILIHS 379

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +   +  ++ E G+      +N LI+ +C+  NF +   LL+ MV +  AP 
Sbjct: 380 LCKRGMMDDALCMFDRMREKGIRVTVYPYNSLINGYCQHDNFHQARGLLNEMVEKGLAPS 439

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I GLC+      A  +  ++   G   +   +TT+I G CK G + +A +++ 
Sbjct: 440 AASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEAARLFD 499

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +MI   ++PNE T+N MI GYCR+ N+ +A +L+ +M+D+G      TY +LI+ LCL  
Sbjct: 500 KMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISVLCLTL 559

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A    +++    +  +  +  TL+ G+CKEG++
Sbjct: 560 GAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRL 596



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 157/372 (42%), Gaps = 48/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P   S + L   L        AM+    +   G S N  +    I   C+ G ++EA
Sbjct: 435 GLAPSAASYSPLIAGLCRKGDLASAMELHREMARNGVSGNVYTFTTLISGFCKDGNMDEA 494

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
              F K+ +  V  +  T+N  + G  ++      ++LY  +++ G              
Sbjct: 495 ARLFDKMIDSSVVPNEVTFNVMIEGYCRVGNVRKAFQLYDQMVDRGLTPDNYTYRSLISV 554

Query: 205 -------------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          L+  FC +G+++E Y +  ++   G+  +
Sbjct: 555 LCLTLGAMKAKEFVDDLENNCVVLNSFSLTTLMYGFCKEGRLTETYHIWDEMRARGVKLD 614

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             +F  ++    +  +  ++S L   M  +   PDN  +  +I+   K    ++A   ++
Sbjct: 615 LISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCMIDVHSKEENIVQALNCWD 674

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +   G  P+ V YT +I+ LCK G+L  A+ +  EM+    LPN +TYN  +       
Sbjct: 675 KMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRFLPNSFTYNCFLDFLANEG 734

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            LE+AK LH  +L+ G    TVT+NTLI G C  G+   A  L +   + G F D I+Y+
Sbjct: 735 ELEKAKVLHATILE-GCLANTVTFNTLIKGFCKAGQIQGAIDLMQNNTESGFFPDCISYS 793

Query: 414 TLIQGYCKEGKI 425
           T+I   CK G I
Sbjct: 794 TIINELCKVGDI 805



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 100/209 (47%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           +  +  ++LR  L  G+  +    ++++    + + F    +L   MV      D + Y 
Sbjct: 140 RARDAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYT 199

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
             I   C+ R    A  +   ++ +G     V Y  +++GLC+   + +A ++   M+ +
Sbjct: 200 AGIRAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVER 259

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G++ +E TY ++++G+CR + LE A  +  +ML   +  +  + + ++ GL   G  D+A
Sbjct: 260 GIVADEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHIDKA 319

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           + L   + + G+  ++   N LI   CK+
Sbjct: 320 FRLACHLGELGMVPNLFACNALIDKLCKD 348



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/324 (20%), Positives = 134/324 (41%), Gaps = 54/324 (16%)

Query: 101 GFSPD------LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +PD      L+S   L    ++A+ F   +D L++     N  SL   +   C+ G +
Sbjct: 540 GLTPDNYTYRSLISVLCLTLGAMKAKEF---VDDLENNCVVLNSFSLTTLMYGFCKEGRL 596

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            E +  + +++  GV   + ++   +   +K+   + +  L+ ++ E G          +
Sbjct: 597 TETYHIWDEMRARGVKLDLISFTVIVYAALKLHDGEKISVLFREMKEKGVKPDNVFHTCM 656

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I     +  + +      +++ DG  P    +  LI+  C+         L   M+    
Sbjct: 657 IDVHSKEENIVQALNCWDKMIADGCSPNVVTYTVLINHLCKSGYLSSAQILCEEMLVGRF 716

Query: 266 APDNFTYE----------------------------------EVINGLCKSRKRLEAYRV 291
            P++FTY                                    +I G CK+ +   A  +
Sbjct: 717 LPNSFTYNCFLDFLANEGELEKAKVLHATILEGCLANTVTFNTLIKGFCKAGQIQGAIDL 776

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             +  E G+ PD + Y+T+I+ LCK+G +  A ++W EM++KGL P+   YN +I  +C 
Sbjct: 777 MQNNTESGFFPDCISYSTIINELCKVGDINKAFQLWNEMLYKGLKPDIVAYNILIR-WCN 835

Query: 352 IDN-LEEAKRLHKEMLDKGYGETT 374
           I    ++   ++ +M++  Y + T
Sbjct: 836 IHGEFDKGLGIYSDMVNLKYADDT 859



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 82/173 (47%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
            +++L   ++   A   +T  +++  L K R+   A  +F+++ +  +  D  +YT  I 
Sbjct: 144 AADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGIR 203

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C++  L  AR +   M  KG+  +   YN +++G CR + + EA  +   M+++G   
Sbjct: 204 AYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVLEAVEVKNSMVERGIVA 263

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VTY TL+ G C     + A  + ++M        V + + ++ G  K G I
Sbjct: 264 DEVTYRTLVYGFCRTEELEMALEMTDDMLSLHFVPSVASCSFMVDGLRKRGHI 316



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 24/105 (22%), Positives = 42/105 (40%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  +    +  G+   +YT + ++    +I     A+ L  EM+   +      Y   I
Sbjct: 143 DAADVLRLSLSSGIAMKQYTASQILFALIKIRQFALARDLFDEMVQCKFPLDEYVYTAGI 202

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              C     D A  L   M  KG+    + YN L+ G C+  +++
Sbjct: 203 RAYCEIRNLDGARGLLTRMESKGVKGSAVPYNVLMYGLCRNNRVL 247


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 164/349 (46%), Gaps = 18/349 (5%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQC 147
           RFF       G  P + +  +L        A      FLD     G SP+ +   ++   
Sbjct: 324 RFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSA 383

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
             + G+I++A   F+K+++ G+  ++  + + +    K+ R D     ++ +I  G    
Sbjct: 384 YAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPN 443

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE--- 255
                 L+   C   K     EL+ ++L+ G+ P    FN LI   C   N GRV E   
Sbjct: 444 IVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLC---NVGRVMEGRR 500

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L+  M      PD F+Y  +I+G C + +  EA +VF+ +   G  P  V Y T++HG C
Sbjct: 501 LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 560

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               + DA  ++ EM+ KG+ P   TYN+++HG  +     EAK L+  M++ G      
Sbjct: 561 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIY 620

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TYN ++ GLC     DEA+ +F+ +  KG+  ++IT+  +I    K G+
Sbjct: 621 TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGR 669



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 169/337 (50%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD    N+ F +  +      AMD  +     G SPN  +    I  LC+ G +++A
Sbjct: 369 GLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDA 428

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++   GV  +I  +NS + G   +D+ +   +L +++++ G          LI  
Sbjct: 429 EVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICN 488

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+V EG  L+  +   G+ P+  ++  LIS +C         ++   MV+   +P 
Sbjct: 489 LCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPT 548

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C + +  +AY +F ++  +G  P  V Y T++HGL +     +A++++ 
Sbjct: 549 EVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYL 608

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI+ G   + YTYN +++G C+ + ++EA ++ + +  KG     +T+  +I  L   G
Sbjct: 609 NMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 668

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  LF  +   G+  +V+TY  + +   +EG +
Sbjct: 669 RKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSL 705



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 153/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   + D L +A+ F  A          GF PN  +    I      G  +E 
Sbjct: 229 GIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEV 288

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G+     T+ S L    K  R       +  +I  G          LI  
Sbjct: 289 VQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHG 348

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G +SE +  L  ++E+GL P++  FN   S + +     +  ++ + M     +P+
Sbjct: 349 YATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPN 408

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+ LCK  +  +A   FN +   G  P+ V++ ++++GLC +     A ++ +
Sbjct: 409 VVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVY 468

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G+ PN   +N++I   C +  + E +RL   M   G      +Y  LI+G CL G
Sbjct: 469 EMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTG 528

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           RTDEA  +F+ M   G+    +TYNTL+ GYC   +I
Sbjct: 529 RTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASRI 565



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 157/338 (46%), Gaps = 22/338 (6%)

Query: 104 PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P++VS +++ +         + + + ++ +D  G  P+  +    I  LC++ L + A  
Sbjct: 197 PNVVSYSIVINGFFTEGQVDKPYNLFLEMIDR-GIPPDVVTYTTVIDGLCKAQLFDRAEG 255

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-------------GYLI 206
            F ++ + G   +  T+N  + G + I +    WK    ++E              G L+
Sbjct: 256 VFQQMIDNGFKPNNYTYNCLIHGYLSIGK----WKEVVQMLEEMSARGLKPDCYTYGSLL 311

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C +G+  E       ++  G+ P+ + +  LI  +  K     +   L  MV    +
Sbjct: 312 NYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLS 371

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD+  +    +   K     +A  +FN +++ G  P+ V Y  +I  LCK+G + DA   
Sbjct: 372 PDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVK 431

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + +MI++G+ PN   +NS+++G C +D  E A+ L  EMLD+G     V +NTLI  LC 
Sbjct: 432 FNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCN 491

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            GR  E   L + M   G+  D  +Y  LI GYC  G+
Sbjct: 492 VGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGR 529



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 120/271 (44%), Gaps = 39/271 (14%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           K+  +L     LI  FC  G +  G+     +L+ G   ++ A N+L+   C  K  G  
Sbjct: 85  KVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEA 144

Query: 254 SE-LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA------------------------ 288
            + LL  M      PD  +Y  ++ GLC  ++  EA                        
Sbjct: 145 MDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSI 204

Query: 289 --------------YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
                         Y +F ++ +RG  PD V YTTVI GLCK      A  ++ +MI  G
Sbjct: 205 VINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNG 264

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN YTYN +IHGY  I   +E  ++ +EM  +G      TY +L+  LC +GR  EA 
Sbjct: 265 FKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREAR 324

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             F+ M +KGI   V TY  LI GY  +G +
Sbjct: 325 FFFDSMIRKGIKPKVSTYGILIHGYATKGAL 355



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 138/315 (43%), Gaps = 13/315 (4%)

Query: 124 VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLG 182
            A   +  TG+  +  ++   ++ LC    + EA      ++ E+G      ++   L G
Sbjct: 111 AAFGLILKTGWRMDHIAINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKG 170

Query: 183 CIKIDRTDLVWKLYH------------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230
                R +   +L H            +++    +I  F  +G+V + Y L  ++++ G+
Sbjct: 171 LCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGI 230

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            P+   +  +I   C+ + F R   +   M+     P+N+TY  +I+G     K  E  +
Sbjct: 231 PPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQ 290

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  ++  RG  PD   Y ++++ LCK G   +AR  +  MI KG+ P   TY  +IHGY 
Sbjct: 291 MLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYA 350

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
               L E       M++ G       +N   +     G  D+A  +F +M Q G+  +V+
Sbjct: 351 TKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVV 410

Query: 411 TYNTLIQGYCKEGKI 425
            Y  LI   CK G++
Sbjct: 411 NYGALIDALCKLGRV 425



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 151/341 (44%), Gaps = 15/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTG--FSPNPNSLELYIQCLCESGLI 154
           G  PD VS  +L   L   +  + A++ L    D  G    PN  S  + I      G +
Sbjct: 156 GCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVINGFFTEGQV 215

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++ +  F ++ + G+   + T+ + + G  K    D    ++  +I++G+         L
Sbjct: 216 DKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCL 275

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  + + GK  E  ++L ++   GL P+   +  L++  C+            +M+ +  
Sbjct: 276 IHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKGI 335

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  +I+G        E +   + + E G  PD  ++        K G +  A  
Sbjct: 336 KPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMD 395

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M   GL PN   Y ++I   C++  +++A+    +M+++G     V +N+L+ GLC
Sbjct: 396 IFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLC 455

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              + + A  L  EM  +GI  + + +NTLI   C  G+++
Sbjct: 456 TVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVM 496



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 143/341 (41%), Gaps = 16/341 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYI 145
           ++F Q ++   G +P++V  N L   L       RA ++  + LD  G  PN       I
Sbjct: 430 VKFNQMINE--GVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQ-GICPNAVFFNTLI 486

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC  G + E       ++ +GV     ++   + G     RTD   K++  ++  G  
Sbjct: 487 CNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLS 546

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+  +C+  ++ + Y L R++L  G+ P    +N ++    + K F    EL
Sbjct: 547 PTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKEL 606

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M+      D +TY  ++NGLCKS    EA+++F  L  +G   + + +T +I  L K
Sbjct: 607 YLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLK 666

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G   DA  ++  +   GL+PN  TY  +        +LEE   L   M   G    +  
Sbjct: 667 GGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQM 726

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            N L+  L   G    A     ++ ++    +  T + L+ 
Sbjct: 727 LNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMS 767


>gi|147838532|emb|CAN65388.1| hypothetical protein VITISV_038361 [Vitis vinifera]
          Length = 676

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 172/376 (45%), Gaps = 31/376 (8%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------- 129
           R  L+ Q++   ++ FF W+ +  G  P   +  ++  +L  +R F  A+ FL       
Sbjct: 150 RVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIIVHTLAWSRNFSQAIKFLCELVELV 209

Query: 130 --DSTGFSP-------------NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
             D  G                +P   ++ ++     G + E   +F ++  +G   ++ 
Sbjct: 210 KDDLPGEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVI 269

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
           T N  L G +K++ TD  W++Y ++   G          L    C DG   +  + L ++
Sbjct: 270 TSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKM 329

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
            E+G  P+   +N LI+ +C K        L   M  R   PD  +Y  ++NGLCK  + 
Sbjct: 330 EEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRV 389

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            EA+++F+ +  RG  PD V Y T+IHG CK G + ++R +  +MI  G+ P+ +T   +
Sbjct: 390 REAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVL 449

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           + GY +      A  L  E+   G   +   Y+ LI  LC   R   A +L E M+Q G 
Sbjct: 450 VEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGH 509

Query: 406 FRDVITYNTLIQGYCK 421
             ++  YN LI+ +C+
Sbjct: 510 KXELEIYNELIKSFCQ 525



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 163/370 (44%), Gaps = 18/370 (4%)

Query: 72  DPLFFREFLK---QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKV 124
           DP+ F   +K   +   V   +R F+ +    GF P +++ N L + L++     R ++V
Sbjct: 232 DPVVFDMLVKAYLRMGRVREGLRSFRRM-LRVGFVPTVITSNYLLNGLLKLNYTDRCWEV 290

Query: 125 AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
             + ++  G +PN  +  +    LC+ G   +      K++E G    I T+N+ +    
Sbjct: 291 YEE-MERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYC 349

Query: 185 KIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           +  R D  + LY          DL+    L+   C +G+V E ++L  +++  GL P+  
Sbjct: 350 RKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIV 409

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +N LI  +C++        LLH M+    +PD+FT   ++ G  K  K L A  +  +L
Sbjct: 410 TYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVEL 469

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +  G      +Y+ +I  LC+      A+ +   M   G       YN +I  +C+ D +
Sbjct: 470 QRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXELEIYNELIKSFCQCDCI 529

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA  L  EM+DK       TY  +J  L    R+ E   L  EM   G   D+     L
Sbjct: 530 AEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVGEMVASGXLPDLEICRAL 589

Query: 416 IQGYCKEGKI 425
             GYC+E  I
Sbjct: 590 FYGYCRENDI 599



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 72/340 (21%), Positives = 119/340 (35%), Gaps = 82/340 (24%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ N L +S         A      +   G  P+  S    +  LC+ G + EA
Sbjct: 333 GFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREA 392

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
              F ++   G+   I T+N+ + G  K  +      L HD+I +G              
Sbjct: 393 HQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEG 452

Query: 204 ------------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                         YLI A C + +      LL ++ +DG   E
Sbjct: 453 YGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSQDGHKXE 512

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N+LI  FC+         L   MV +   P+  TY  VJ  L +  + +E   +  
Sbjct: 513 LEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVJGCLSRLSRSMEGESLVG 572

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWL--------------------------------G 321
           ++   G +PD  +   + +G C+   +                                G
Sbjct: 573 EMVASGXLPDLEICRALFYGYCRENDIDKAESLLSFXAKEFQIHDTESFNALIRITSAKG 632

Query: 322 D-ARKMWFE--MIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           D AR +  +  M+  GLLPN  T   +I G  +   ++ A
Sbjct: 633 DIARSLEIQDMMLKMGLLPNPLTCKYVIDGLWKARRVDSA 672


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 164/333 (49%), Gaps = 14/333 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+VS N L + L +A+  K A+  L   ++ G  PN  +    +  LC+ G ++EA  
Sbjct: 30  SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 89

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
               +K+ G    +  + + + G       D   +L+ +++  G          L+   C
Sbjct: 90  LLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLC 149

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+  E   +L  + E G+ P+   +  LI   C+        +LL+ MV +   P N 
Sbjct: 150 RLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNV 209

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +++GLCK    ++A+++   + E+G   D V Y T++ GLC  G + +A K++  M
Sbjct: 210 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 269

Query: 331 I--HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
                 L PN +T+N +I G C+   L +A ++H++M+ KG     VTYN L+ G    G
Sbjct: 270 FDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAG 329

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +  EA  L++++   G   +  TY+ LI G+CK
Sbjct: 330 KIKEAMELWKQVLDLGFVPNSFTYSILIDGFCK 362



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 148/296 (50%), Gaps = 11/296 (3%)

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           + + ++ LC +G + EA     ++    V   I ++N+ + G  K  +      L  ++ 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 201 ESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
            +G          L+   C DG++ E  ELL  + + G   +   +  LIS FC   N  
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           R  EL   M+ +  + +  TY  +++GLC+  +  EA  V N + E G  PD V YT +I
Sbjct: 121 RGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLI 180

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK G    A  +   M+ KG  P+  TYN ++ G C+   + +A ++ + M++KG  
Sbjct: 181 DGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKK 240

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEM--AQKGIFRDVITYNTLIQGYCKEGKI 425
              VTYNTL+ GLC  G+ DEA  LF  M   +  +  +V T+N LI G CKEG++
Sbjct: 241 ADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRL 296



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 154/337 (45%), Gaps = 14/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D+V    L              +  D     G S N  +    +  LC  G  +EA
Sbjct: 98  GFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEA 157

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               + + E G+   + T+   + G  K  R      L + ++E G          L+  
Sbjct: 158 NTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSG 217

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-- 266
            C +G V + +++LR ++E G   +   +N L+   C+K       +L ++M        
Sbjct: 218 LCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLE 277

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+ FT+  +I GLCK  +  +A ++   + ++G   + V Y  ++ G  K G + +A ++
Sbjct: 278 PNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMEL 337

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           W +++  G +PN +TY+ +I G+C++  L  AK L  EM   G       YNTL+A LC 
Sbjct: 338 WKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCK 397

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G  ++A  LF+EM       D+I++NT+I G  K G
Sbjct: 398 EGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAG 434



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 119/223 (53%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C +G V E   L+R++    + P+  ++N LI+  C+ K       LL  M A  
Sbjct: 4   VLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAG 63

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P++ T   +++GLCK  +  EA  +   +K++G+  D V+Y T+I G C  G L   +
Sbjct: 64  CFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGK 123

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ EM+ KG+  N  TY+ ++HG CR+   +EA  +   M + G     VTY  LI GL
Sbjct: 124 ELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGL 183

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C  GR   A  L   M +KG     +TYN L+ G CKEG +++
Sbjct: 184 CKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVID 226



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 163/355 (45%), Gaps = 22/355 (6%)

Query: 91  RFFQWLHSH--------YGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPN 139
           R  QW  ++        +G  PD+V+   L D L +      AMD L+     G  P+  
Sbjct: 150 RLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNV 209

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +  + +  LC+ GL+ +AF     + E G    + T+N+ + G     + D   KL++ +
Sbjct: 210 TYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 269

Query: 200 IES-----------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            ++             LI   C +G++++  ++ R++++ G       +N L+    +  
Sbjct: 270 FDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAG 329

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                 EL   ++     P++FTY  +I+G CK R    A  +F +++  G  P    Y 
Sbjct: 330 KIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYN 389

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T++  LCK G L  A+ ++ EM +    P+  ++N+MI G  +  + +  K L  +M++ 
Sbjct: 390 TLMASLCKEGSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEM 449

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G     +T++TLI  L   G  DEA    E M   G   D + Y++L++G   +G
Sbjct: 450 GLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKG 504



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/204 (20%), Positives = 82/204 (40%), Gaps = 12/204 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+  + ++L D   + R   +A      + + G +P        +  LC+ G +E+A
Sbjct: 345 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQA 404

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++        I ++N+ + G +K      V +L   ++E G          LI  
Sbjct: 405 KSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTLINR 464

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G++ E    L +++  G  P+   ++ L+     K +   +  LLH M A+    D
Sbjct: 465 LSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLD 524

Query: 269 NFTYEEVINGLCKSRKRLEAYRVF 292
                 ++  LC S + ++   + 
Sbjct: 525 RKIVSTILTCLCHSIQEVDVMELL 548


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 169/356 (47%), Gaps = 23/356 (6%)

Query: 92  FFQWLHSHYGFS-----------PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPN 137
           F +  H  YGFS           P++++ + L +          A++  D   + G+ PN
Sbjct: 136 FCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPN 195

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
            +S  + I+ LC  G   E       +K +G    +  +N+ +    K    +    ++ 
Sbjct: 196 VHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFC 255

Query: 198 DLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            +  +G L         I    N G+  E + LL ++    ++P+  AF+ LI   C++ 
Sbjct: 256 KMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEG 315

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                  +L TM      PD  TY  ++NG C   + +EA +VF  +  +G +PD   ++
Sbjct: 316 EVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFS 375

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            +++G CK   + +A++++ EM H+GL+P+  +YN++I G C+     EA+ L K+M   
Sbjct: 376 ILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSN 435

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           GY    VTY+ L+  L   G  D+A  LF  M   G+  D++TYN +I G CK GK
Sbjct: 436 GYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGK 491



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 168/339 (49%), Gaps = 20/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++ S +++   L         +  L+     G  P+       +  LC+  L+ EA
Sbjct: 191 GYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEA 250

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-------------LYHDLIESGY 204
              F K+K  G+  ++ T+ S + G   + R    WK             +  DL+    
Sbjct: 251 VHIFCKMKGTGILPTVVTYTSLIHGLRNLGR----WKEAFGLLNEMKGGNIMPDLVAFSV 306

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C +G+VSE   +L+ + E G+ P+   +N L++ +C +       ++   M+++ 
Sbjct: 307 LIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKG 366

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
           R PD F++  ++NG CK+++  EA ++F+++  RG +PDTV Y T+I GLC+     +A 
Sbjct: 367 RMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAE 426

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ +M   G  PN  TY+ ++    +   L++A  L + M + G     VTYN +I G+
Sbjct: 427 ELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGM 486

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C +G+  +A  LF E++ KG+  +       I G CK G
Sbjct: 487 CKYGKFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGG 525



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 134/282 (47%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGY 204
           I +A  AF+ +       SI  +       +++     V  L          HD++    
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC    V  G+ +L ++++ GL P    F+ LI+ FC +   GR  EL   MVAR 
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  +Y  +I GLC+  K  E  ++   +K  G  PD V+Y T++  LCK   + +A 
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAV 251

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ +M   G+LP   TY S+IHG   +   +EA  L  EM         V ++ LI  +
Sbjct: 252 HIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIM 311

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G   EA  + + M + G+  DV TYNTL+ GYC   ++V
Sbjct: 312 CKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVV 353



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 85/180 (47%), Gaps = 1/180 (0%)

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           +N        + MV  N  P    + E+ + L + +       +   ++  G   D +  
Sbjct: 70  RNINDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSL 129

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           T +I+  C++  +     +  ++I  GL PN  T++++I+G+C    +  A  L   M+ 
Sbjct: 130 TILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVA 189

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +GY     +Y+ +I GLC  G+T E   L E M   G   DV+ YNT++   CK+ ++VN
Sbjct: 190 RGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCKD-RLVN 248



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 18/220 (8%)

Query: 98  SHYGFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           +  G  PD+ + N L +       +VEAR      + + S G  P+  S  + +   C++
Sbjct: 328 TEMGVEPDVATYNTLMNGYCLRMEVVEARK---VFEVMISKGRMPDVFSFSILVNGYCKA 384

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
             I+EA   F ++   G+     ++N+ + G  +  R     +L+ D+  +GY       
Sbjct: 385 KRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTY 444

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             L+      G + +   L R +   GL P+   +N +I   C+   F    EL   +  
Sbjct: 445 SILLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSV 504

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
           +   P+N+     I+G+CK     EA++ F  +++    P
Sbjct: 505 KGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 160/329 (48%), Gaps = 16/329 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEM 167
           N++   L  A     A++ L      P PN++     I   C  G ++ A     +++E 
Sbjct: 45  NIMLRHLCSAGKPARALELLRQM---PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRER 101

Query: 168 GVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVS 216
           G     + T+ + + G  K+ R D   K++ +++  G           LI  +C+ GK+ 
Sbjct: 102 GGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD 161

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
                  +++E G+      +N L+             EL+  M  +  APD FTY  +I
Sbjct: 162 TALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILI 221

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG CK     +A  +F ++  RG     V YT++I+ L K G + +  K++ E + +G+ 
Sbjct: 222 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIR 281

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   YN++I+ +    N++ A  +  EM  K      VTYNTL+ GLCL GR DEA  L
Sbjct: 282 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 341

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EM ++GI  D++TYNTLI GY  +G +
Sbjct: 342 IDEMTKRGIQPDLVTYNTLISGYSMKGDV 370



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 173/372 (46%), Gaps = 57/372 (15%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+ V+ N +          + A+D +    +  G +PN  +    I   C+ G ++EA  
Sbjct: 70  PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 129

Query: 160 AFSKLKEMGVFGSIK----TWNSALLGCIKIDRTDLVWKLYHD-LIESGY---------L 205
            F    EM   G +K     +N+ + G     + D    LY D ++E G          L
Sbjct: 130 VFD---EMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLL 185

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM----- 260
           + A   DG+ +E YEL+ ++   GL P+   +N LI+  C++ N  +  E+   M     
Sbjct: 186 VHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 245

Query: 261 ------------------------------VARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                                         V R   PD   Y  +IN    S     A+ 
Sbjct: 246 RATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 305

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  +++++   PD V Y T++ GLC +G + +ARK+  EM  +G+ P+  TYN++I GY 
Sbjct: 306 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYS 365

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
              ++++A R+  EM++KG+  T +TYN LI GLC +G+ D+A ++ +EM + GI  D  
Sbjct: 366 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 425

Query: 411 TYNTLIQGYCKE 422
           TY +LI+G   E
Sbjct: 426 TYISLIEGLTTE 437



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 107/194 (55%), Gaps = 8/194 (4%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFN 293
           T FN ++   C      R  ELL  M      P+  TY  VI G C SR R++ A  +  
Sbjct: 42  TTFNIMLRHLCSAGKPARALELLRQM----PRPNAVTYNTVIAGFC-SRGRVQAALDIMR 96

Query: 294 DLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCR 351
           +++ERG + P+   Y TVI G CK+G + +A K++ EM+ KG + P    YN++I GYC 
Sbjct: 97  EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L+ A      M+++G   T  TYN L+  L + GR  EAY L EEM  KG+  DV T
Sbjct: 157 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFT 216

Query: 412 YNTLIQGYCKEGKI 425
           YN LI G+CKEG +
Sbjct: 217 YNILINGHCKEGNV 230



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T  +  ++  LC  G    A     E++ +   PN  TYN++I G+C    ++ A  + +
Sbjct: 41  TTTFNIMLRHLCSAGKPARA----LELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMR 96

Query: 364 EMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCK 421
           EM ++ G      TY T+I+G C  GR DEA  +F+EM  KG  + + + YN LI GYC 
Sbjct: 97  EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 156

Query: 422 EGKI 425
           +GK+
Sbjct: 157 QGKL 160


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 164/338 (48%), Gaps = 17/338 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  V+   L D L++A     AM  L+     G SP   +  + I  L ++G +EEA   
Sbjct: 109 PTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRI 168

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------YLIQ 207
           F  +   G       + + + G  KI + D      + ++E+G              +I+
Sbjct: 169 FVDMLGNGCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIR 228

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + +      + L+D L   +  FN L++  C+ +        +  M  R   P
Sbjct: 229 QLCASGNLEDALAYFDE-LDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFP 287

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             FTY  +++G  K  +  EA     +  ERG++PD V YT++I GLCK+G + +  + +
Sbjct: 288 TLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERF 347

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM ++G  P+  TY ++I G+ +   + +A R++++ML  G   +TVTYN ++ GLC  
Sbjct: 348 HEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKA 407

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR  EAY  F  M ++G    V+TY+ L+ G+C EG +
Sbjct: 408 GRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNV 445



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 152/328 (46%), Gaps = 38/328 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM-------DFLDSTGFSPNPNSLELYIQCLCESGL 153
           G  PD+V  N++   L  +   + A+       D LD T F+ NP      +  LC++  
Sbjct: 215 GVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNP-----LVAALCKAER 269

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
            EEA     K+ E   F ++ T+ S                          L+  F   G
Sbjct: 270 TEEAIAFVKKMSERRCFPTLFTYTS--------------------------LVDGFLKLG 303

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           ++ E    L++ +E G +P+   +  +I   C+        E  H M  R   PD  TY 
Sbjct: 304 RLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYA 363

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+G  K++   +A+RV+  + + G V  TV Y  ++ GLCK G + +A   +  M  +
Sbjct: 364 ALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEER 423

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G +    TY++++ G+C   N+  A  L + MLD+G     V+YN +I GLC  G+  +A
Sbjct: 424 GCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKA 483

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y  FE++ Q+ +  DV T+N+ + G C+
Sbjct: 484 YFYFEKLLQRRLCPDVYTFNSFLHGLCQ 511



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 163/353 (46%), Gaps = 17/353 (4%)

Query: 64  DIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
           D+  F FN PL     L +      +I F + +     F P L +   L D  ++     
Sbjct: 251 DLTHFTFN-PLV--AALCKAERTEEAIAFVKKMSERRCF-PTLFTYTSLVDGFLKLGRLD 306

Query: 124 VAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
            A+  L      GF P+  +    I  LC+ G +EE    F +++  G      T+ + +
Sbjct: 307 EALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 366

Query: 181 LGCIKIDRTDLVWKLYHDLIESGYLIQ---------AFCNDGKVSEGYELLRQVLEDGLV 231
            G +K        ++Y  +++SG ++            C  G+V+E Y     + E G V
Sbjct: 367 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 426

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
                ++ L+  FC + N     EL   M+ R   P+  +Y  +I GLC++ K  +AY  
Sbjct: 427 ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFY 486

Query: 292 FNDLKERGYVPDTVMYTTVIHGLC-KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           F  L +R   PD   + + +HGLC ++  +GD  +++  M+ +G  PN ++Y+ ++ G C
Sbjct: 487 FEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSILMDGIC 546

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           R   LE    +  EM+ +G     V +NTLI  LC+ GR DEA  +F E+ ++
Sbjct: 547 RAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERR 599



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 143/334 (42%), Gaps = 14/334 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           D   C  L + L +      AM  LD    SP+  +  + I  LC    ++EAF    + 
Sbjct: 8   DTRVCTALLNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERA 67

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKV 215
              G      T+N  + G  K +R D  ++L   + E            L+      G++
Sbjct: 68  VRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRL 127

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E   +L Q++E G  P    +  +I    +         +   M+     PD F Y  +
Sbjct: 128 DEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTAL 187

Query: 276 INGLCKSRKRLEAYRVFNDLKE----RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           I+GL K  K  EA    N + E    RG  PD V++  VI  LC  G L DA   +F+ +
Sbjct: 188 ISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALA-YFDEL 246

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              L    +T+N ++   C+ +  EEA    K+M ++    T  TY +L+ G    GR D
Sbjct: 247 DDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLD 306

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA    +E  ++G   D +TY ++I G CK G++
Sbjct: 307 EALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRV 340



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 120/289 (41%), Gaps = 51/289 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ PD V+   L D  ++A+    A +V    L S G   +  +  + +  LC++G + E
Sbjct: 354 GYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQS-GTVVSTVTYNIILDGLCKAGRVAE 412

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A+  F  ++E G   ++ T+++ + G           +L+  +++ G          +I+
Sbjct: 413 AYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIR 472

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK-------------------- 247
             C  GK+++ Y    ++L+  L P+   FN  +   C++                    
Sbjct: 473 GLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTS 532

Query: 248 KNFGRVS----------------ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            N    S                E+ H MV+R  APD   +  +I  LC + +  EA  V
Sbjct: 533 PNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEV 592

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           F +L ER   PD   Y +++  L +   + +AR + F M  +G  P  Y
Sbjct: 593 FREL-ERRSAPDAWSYWSLLDALSRCERMEEARLLSFHMKLQGCAPRHY 640



 Score = 40.4 bits (93), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           ++ L  D+ +FN     F     ++ + V   +  F+ + S  G SP+L S ++L D + 
Sbjct: 492 QRRLCPDVYTFNS----FLHGLCQRLDTVGDGVELFESMVSQ-GTSPNLHSYSILMDGIC 546

Query: 118 EARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
            A   +V ++    + S G +P+       I+ LC +G ++EA   F +L+      +  
Sbjct: 547 RAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSAPDAWS 606

Query: 175 TWN--SALLGCIKIDRTDLV 192
            W+   AL  C +++   L+
Sbjct: 607 YWSLLDALSRCERMEEARLL 626


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 35/322 (10%)

Query: 111 VLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           VL  +   A   + AMD L       G +P P+    ++  LC+SG + EA      +K+
Sbjct: 23  VLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD 82

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVL 226
                 + T+N+                          LI   C  G++ E  ++L ++ 
Sbjct: 83  GACKPDVVTFNT--------------------------LIAGLCKAGRLDEAQQVLDEME 116

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             G       +N LI+      + GR  E +  M      PD  TY  +I+G CKS +  
Sbjct: 117 RSGFAANLVTYNTLINGL---SSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEID 173

Query: 287 EAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI-HKGLLPNEYTYNS 344
            AY    ++K+R G  PDT  Y+ +I+GLCK   L  A ++  EMI  K    +   +N+
Sbjct: 174 RAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNT 233

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++ GYC+  +L+ A+ L   ML+ G     VTY+T+I GLC  G  D+ + L E+M  +G
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
              DV+TY  L+ G CK GK+V
Sbjct: 294 CKPDVVTYTVLVTGLCKAGKMV 315



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 132/292 (45%), Gaps = 17/292 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L   L +A     A   LD    +GF+ N  +    I  L  +G   EA   
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFC 210
              ++ M      +T+N+ + G  K    D  +    ++ +             LI   C
Sbjct: 147 ---MQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 211 NDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
               + +  ELL++++          AFN L+  +C+ ++  R  ELL +M+    APD 
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+GLC+     + + +   +  RG  PD V YT ++ GLCK G + +A ++   
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           M+  G  PN  TY+ +  G C+ID L+ A  L   + DKG     V + TL+
Sbjct: 324 MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           + YTY  ++  +C    L+ A  L +EM  + G   T   YN  +  LC  G+  EA  +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + M       DV+T+NTLI G CK G++
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRL 105


>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 947

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 160/337 (47%), Gaps = 44/337 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF P+  +    I   C+ G +EEAF    K+++  +  SI+ +NS + G  K  +T  V
Sbjct: 529 GFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKKTREV 588

Query: 193 WKLYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L  ++         +  G LI  +C++G++ + +     ++E G  P     +K++S 
Sbjct: 589 MDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSS 648

Query: 244 FCEKKNFGRVSELLHTMVARN-----------------------------------RAPD 268
                     + LL  MV  +                                     P+
Sbjct: 649 LYRLGRIDEANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPN 708

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  Y   I GLCKS K  +A ++F+ L  RG+ PD   Y T+IHG    G + DA  +  
Sbjct: 709 SVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRD 768

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +GL PN  TYN++I+G C+  NL+ A++L  ++  KG     ++YN LI G C +G
Sbjct: 769 EMLKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNG 828

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T EA  L  +M ++GI   +ITY+ LI G+CK+G +
Sbjct: 829 NTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDM 865



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 177/373 (47%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L SCN L  SLV   E+    +  D ++  G  P+  +  + +   C+ G +  A
Sbjct: 178 GCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWVNVA 237

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI---DRTDLVWKLY------HDLIESGYLIQA 208
                ++  +G   ++ T+NS + GC+ I   +R ++V KL        + +    LI+ 
Sbjct: 238 VDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLLIKG 297

Query: 209 FCNDGKVSEGYELLRQV-LEDGLVPENTAFNKLISRFCE-------------------KK 248
           +C   K+ E  ++LR++   +G+V +  A+  LI  +C                    + 
Sbjct: 298 YCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVGLRM 357

Query: 249 NF-------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           N              G+VSE   LL  MV  +  P++++Y  +++G C+     +A  V+
Sbjct: 358 NLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAISVY 417

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           N++   G   + V + +++ GLC++G   DA  +W  M+ +G+ P+E +Y +++    ++
Sbjct: 418 NEMLRVGIQSNVVTHNSLLKGLCRVGAFEDALHVWHLMLKRGVTPDEVSYCTLLDLLFKM 477

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
                A  L  ++L +GYG +T  +NT+I G C   +  EA   F  M + G   D +TY
Sbjct: 478 GEFFRALALWNDILARGYGRSTYAFNTMINGFCKMEKMIEAEETFNRMKELGFEPDGVTY 537

Query: 413 NTLIQGYCKEGKI 425
            TLI GYCK G +
Sbjct: 538 RTLIDGYCKLGNV 550



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 165/339 (48%), Gaps = 22/339 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +   N L   L +++  +  MD L      G SPN  +    I   C+ G +++AF A
Sbjct: 567 PSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTA 626

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG------K 214
           +  + E G   ++   +  +    ++ R D    L   ++     +  F + G      K
Sbjct: 627 YFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVN----LDVFLDHGYFDRLHK 682

Query: 215 VSEGYELLRQVLEDGL--------VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +G  L  Q + D L        +P +  +N  I+  C+        ++  +++ R  +
Sbjct: 683 ADDG-NLDSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFS 741

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PDNFTY  +I+G   +    +A+ + +++ +RG  P+ + Y  +I+GLCK G L  A+K+
Sbjct: 742 PDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAPNIITYNALINGLCKSGNLDRAQKL 801

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + ++  KGL PN  +YN +I GYC+  N  EA  L  +ML +G   + +TY+ LI G C 
Sbjct: 802 FDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCK 861

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G   +A +L +EM +    +++  +  L++G+ K G++
Sbjct: 862 QGDMGKATNLLDEMRELFADQNIAKFVKLVEGHVKCGEV 900



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 175/389 (44%), Gaps = 32/389 (8%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           +F F+D +     LK + N + S+ FF+       F P++ S   L   L  AR +    
Sbjct: 55  NFQFSDYILDSVLLKLKFNPIASLHFFKLASKQSNFRPNVNSHCKLVHILSRARMYDETR 114

Query: 127 DFLDS----------------------TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
            +L+                         F  +P   ++ ++  CE G+I+ A   F  +
Sbjct: 115 SYLNELVTPSKNNYSSLVVWNELVRVFEDFKFSPTVFDMILKIYCEKGMIKNALHVFDNM 174

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKV 215
            ++G   S+++ N  L   ++   +     +Y          D+     ++ A+C DG V
Sbjct: 175 GKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDHINRLGIVPDVFTCSIMVNAYCKDGWV 234

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           +   + ++++   G       +N LI       +  R   +L  M  R    +  T   +
Sbjct: 235 NVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGDMERAEMVLKLMGERGILRNKVTLTLL 294

Query: 276 INGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           I G C+  K  EA +V  ++ +  G V D   Y  +I G C++  + DA ++  EM++ G
Sbjct: 295 IKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYGVLIDGYCRVCKMDDAVRLRDEMLNVG 354

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L  N +  N++I+GYC+   + EA+RL   M+D      + +Y+TL+ G C  G   +A 
Sbjct: 355 LRMNLFICNALINGYCKNGQVSEAERLLMRMVDWDLEPESYSYSTLMDGFCREGLVTKAI 414

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            ++ EM + GI  +V+T+N+L++G C+ G
Sbjct: 415 SVYNEMLRVGIQSNVVTHNSLLKGLCRVG 443



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 150/329 (45%), Gaps = 31/329 (9%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G   +L  CN L +   +    + A ++ M  +D     P   S    +   C  GL+ +
Sbjct: 354 GLRMNLFICNALINGYCKNGQVSEAERLLMRMVD-WDLEPESYSYSTLMDGFCREGLVTK 412

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A   ++++  +G+  ++ T NS                          L++  C  G   
Sbjct: 413 AISVYNEMLRVGIQSNVVTHNS--------------------------LLKGLCRVGAFE 446

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +   +   +L+ G+ P+  ++  L+    +   F R   L + ++AR      + +  +I
Sbjct: 447 DALHVWHLMLKRGVTPDEVSYCTLLDLLFKMGEFFRALALWNDILARGYGRSTYAFNTMI 506

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG CK  K +EA   FN +KE G+ PD V Y T+I G CK+G + +A K+  +M  + +L
Sbjct: 507 NGFCKMEKMIEAEETFNRMKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAIL 566

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   YNS+I G  +     E   L  EM  KG     VTY TLIAG C  GR D+A+  
Sbjct: 567 PSIELYNSLIGGLFKSKKTREVMDLLSEMCLKGLSPNVVTYGTLIAGWCDEGRLDKAFTA 626

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +M +KG   +VI  + ++    + G+I
Sbjct: 627 YFDMIEKGFAPNVIICSKIVSSLYRLGRI 655



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/313 (23%), Positives = 130/313 (41%), Gaps = 49/313 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP++V+   L     +     +AF    D ++  GF+PN       +  L   G I+E
Sbjct: 599 GLSPNVVTYGTLIAGWCDEGRLDKAFTAYFDMIEK-GFAPNVIICSKIVSSLYRLGRIDE 657

Query: 157 AFCAFSKLKEMGVF--------------GSIKT---------------------WNSALL 181
           A     K+  + VF              G++ +                     +N A+ 
Sbjct: 658 ANMLLQKMVNLDVFLDHGYFDRLHKADDGNLDSQKIADTLDESSKSFSLPNSVVYNIAIA 717

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K  + D   K++  L+  G+         LI  +   G V++ + L  ++L+ GL P
Sbjct: 718 GLCKSGKVDDAKKIFSSLLLRGFSPDNFTYCTLIHGYSAAGNVNDAFSLRDEMLKRGLAP 777

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +N LI+  C+  N  R  +L   +  +  AP+  +Y  +I+G CK+    EA  + 
Sbjct: 778 NIITYNALINGLCKSGNLDRAQKLFDKLHLKGLAPNVISYNILIDGYCKNGNTREALDLR 837

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           N + + G  P  + Y+ +I+G CK G +G A  +  EM       N   +  ++ G+ + 
Sbjct: 838 NKMLKEGISPSLITYSALIYGFCKQGDMGKATNLLDEMRELFADQNIAKFVKLVEGHVKC 897

Query: 353 DNLEEAKRLHKEM 365
             +++  +LH  M
Sbjct: 898 GEVKKIAKLHNMM 910



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 1/192 (0%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T F+ ++  +CEK        +   M      P   +   +++ L +  +   A  V++ 
Sbjct: 149 TVFDMILKIYCEKGMIKNALHVFDNMGKLGCVPSLRSCNRLLSSLVRKGESSNAILVYDH 208

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G VPD    + +++  CK GW+  A     EM + G   N  TYNS+I G   I +
Sbjct: 209 INRLGIVPDVFTCSIMVNAYCKDGWVNVAVDFVKEMDYLGFELNVVTYNSLIDGCVSIGD 268

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-KGIFRDVITYN 413
           +E A+ + K M ++G     VT   LI G C   + +EA  +  EM + +G+  D   Y 
Sbjct: 269 MERAEMVLKLMGERGILRNKVTLTLLIKGYCRQCKLEEAEKVLREMERSEGMVLDEYAYG 328

Query: 414 TLIQGYCKEGKI 425
            LI GYC+  K+
Sbjct: 329 VLIDGYCRVCKM 340


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   +FN L++ +    +      
Sbjct: 133 PASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G CR  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M Q+ I  D + Y  LI G C+EG+ ++
Sbjct: 313 TYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLD 364



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/195 (23%), Positives = 78/195 (40%), Gaps = 34/195 (17%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L      K A D +D     G  P+ 
Sbjct: 253 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKGLKPDK 311

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G +E AF    ++ +  +                             
Sbjct: 312 ITYTTLIDGXCKEGDLETAFEHRKRMIQENI----------------------------Q 343

Query: 199 LIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           L + GY  LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +    S+L
Sbjct: 344 LDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKL 403

Query: 257 LHTMVARNRAPDNFT 271
           L  M    + P   T
Sbjct: 404 LKEMQRDGQMPSVVT 418


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 162/325 (49%), Gaps = 29/325 (8%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           ++PD+VS + L +SL  A  ++ A++    + + G  PN  +    + CL ++G  +EA 
Sbjct: 40  WTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEAL 99

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
              +++++ G    ++T+N                           LI      G++SE 
Sbjct: 100 RLLAEMRDNGCVPDVRTYNC--------------------------LISTLGKAGRLSEA 133

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           + L  ++ E G VP+   +N LI    +     +  ELL  M      PD  TY  +I G
Sbjct: 134 FTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITG 193

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           L K  + ++A+++F ++K RG  PD++ +T ++  L K G + DA ++  EM  +G+ P 
Sbjct: 194 LGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPG 253

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I G+ ++ +L EA  L  EM   G     VTY+ LI GL    + DEA  + +
Sbjct: 254 VVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLK 313

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEG 423
           +M ++G   D ITYNTLI G  K G
Sbjct: 314 KMEKEGCPPDTITYNTLINGLGKAG 338



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 165/371 (44%), Gaps = 47/371 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L + N L D L +A  F  A+  L      G  P+  +    I  L ++G + EA
Sbjct: 74  GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEA 133

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR----------------------------- 188
           F  F++++E G      T+NS + G  K+ R                             
Sbjct: 134 FTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITG 193

Query: 189 ------TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                 T   +KL+ ++   G          L+ A    G+V +  ELL ++ E G+ P 
Sbjct: 194 LGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPG 253

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N LI+ F +  +      LL  M      PD  TY  +I GL K+ +  EA +V  
Sbjct: 254 VVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLK 313

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +++ G  PDT+ Y T+I+GL K G L DA +++  M  KG  P+  TY+++I    +  
Sbjct: 314 KMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAA 373

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +E A  L +EM   G      TY ++I  L   G+ D+A  LF EM  KG+  DVITYN
Sbjct: 374 RVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYN 433

Query: 414 TLIQGYCKEGK 424
             +    + G+
Sbjct: 434 AFLNSLGRGGR 444



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 155/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N L   L +    + AM+ L+     G  P+  +    I  L + G   +A
Sbjct: 144 GCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKA 203

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F  F ++K  G      T+ + +    K  R D   +L  ++ E G          LI  
Sbjct: 204 FKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAG 263

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + E Y LL ++  +G  P+   ++ LI+   +        ++L  M      PD
Sbjct: 264 FGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPD 323

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGL K+    +A R+F+ +K +G  PD V Y+T+I  L K   +  A  ++ 
Sbjct: 324 TITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFE 383

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G+ P+ +TY S+I    +   +++A RL  EM  KG     +TYN  +  L   G
Sbjct: 384 EMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGG 443

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  EA  +FE+M + G+  DV TY+ L+ G  K  ++
Sbjct: 444 RFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEV 480



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 153/329 (46%), Gaps = 30/329 (9%)

Query: 101 GF-SPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF SP++V+ N L ++L +A   + A    + L +  ++P+  S    I  L  +G  E 
Sbjct: 3   GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEA 62

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A    ++++  G   ++ T+N+                          L+      G+  
Sbjct: 63  ALEVVAEMQAKGCKPNLWTYNT--------------------------LVDCLGKAGQFD 96

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   LL ++ ++G VP+   +N LIS   +         L   M  R   PD FTY  +I
Sbjct: 97  EALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLI 156

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            GL K  +  +A  +  +++  G  PD + Y+++I GL K G    A K++ EM  +G  
Sbjct: 157 YGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRK 216

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  T+ +++    +   +++A  L  EM ++G     VTYN LIAG    G   EAY+L
Sbjct: 217 PDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNL 276

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EM + G   DV+TY+ LI G  K  ++
Sbjct: 277 LDEMKRNGCKPDVVTYSCLITGLIKASQL 305



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 137/295 (46%), Gaps = 27/295 (9%)

Query: 133 GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
           GF SPN  +    +  L ++G  EEA   F +LK                          
Sbjct: 3   GFPSPNVVTYNSLLNALAKAGQCEEAQLLFEELK-------------------------- 36

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             K   D++    LI +    GK     E++ ++   G  P    +N L+    +   F 
Sbjct: 37  AAKWTPDVVSYSCLINSLGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFD 96

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               LL  M      PD  TY  +I+ L K+ +  EA+ +F +++ERG VPDT  Y ++I
Sbjct: 97  EALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLI 156

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           +GL K+G    A ++  EM   G  P+  TY+S+I G  +     +A +L +EM  +G  
Sbjct: 157 YGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRK 216

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             ++T+  L+  L   GR D+A  L +EM ++G+   V+TYN LI G+ K G +V
Sbjct: 217 PDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLV 271



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 163/358 (45%), Gaps = 13/358 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L +    + + + FQ +    G  PD ++   L D+L +A     A++ LD     G  P
Sbjct: 194 LGKDGETVKAFKLFQEMKRR-GRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKP 252

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
              +    I    + G + EA+    ++K  G    + T++  + G IK  + D   ++ 
Sbjct: 253 GVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVL 312

Query: 197 H---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
                     D I    LI      G +++   L  ++   G  P+   ++ LI+   + 
Sbjct: 313 KKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKA 372

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                   L   M +    PD FTY  +I  L K+ +  +A R+F++++ +G  PD + Y
Sbjct: 373 ARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITY 432

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
              ++ L + G   +ARK++ +M   GLLP+  TY++++ G  +   +++A  L KE+++
Sbjct: 433 NAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIE 492

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +G    ++ ++  +  L   G  DEA+ L +    KG++    +YN LI    K G++
Sbjct: 493 QGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRV 550



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 145/337 (43%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L     +      A + LD     G  P+  +    I  L ++  ++EA
Sbjct: 249 GVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEA 308

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+++ G      T+N+ + G  K    +   +L+          D++    LI A
Sbjct: 309 CQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITA 368

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                +V     L  ++   G+ P+   +  +I+   +         L   M  +  +PD
Sbjct: 369 LGKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPD 428

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY   +N L +  +  EA ++F D+KE G +PD   Y  ++ GL K   + DA  +  
Sbjct: 429 VITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLK 488

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+I +G   +   ++  +       N++EA  L +    KG      +YN LI  L   G
Sbjct: 489 ELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAG 548

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  EA++  E++ ++G   D+++Y++LI    + G+I
Sbjct: 549 RVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQI 585



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 150/329 (45%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + L   L++A     A   L   +  G  P+  +    I  L ++GL+ +A
Sbjct: 284 GCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDA 343

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++K  G    + T+++ +    K  R +    L+ ++   G          +I  
Sbjct: 344 GRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCSIITV 403

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G+V +   L  ++   GL P+   +N  ++       F    ++   M      PD
Sbjct: 404 LGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY+ ++ GL K+++  +A  +  +L E+G   D++ +   +  L   G + +A ++  
Sbjct: 464 VATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDECLEILTSWGNVDEAHELLQ 523

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
               KGL P   +YN++I    +   + EA    +++ ++G     V+Y++LI+ L   G
Sbjct: 524 FANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTG 583

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           + D A+ L EEM+++G+     +Y+ L++
Sbjct: 584 QIDTAFELLEEMSKRGLKLSPRSYSNLVR 612



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 109/268 (40%), Gaps = 48/268 (17%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCL 148
            F+ + S  G  PDL +   +   L +A     A      +   G SP+  +   ++  L
Sbjct: 381 LFEEMES-VGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSL 439

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
              G  +EA   F  +KE G+   + T+++ LLG  K    D    L  +LIE G    +
Sbjct: 440 GRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDS 499

Query: 209 FCND---------GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
              D         G V E +ELL+     GL P  +++N LI    +    GRVSE    
Sbjct: 500 LKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKA---GRVSE---- 552

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
                                       A+    DLKE+G  PD V Y+++I  L + G 
Sbjct: 553 ----------------------------AFNTLEDLKEQGGKPDIVSYSSLISALGQTGQ 584

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           +  A ++  EM  +GL  +  +Y++++ 
Sbjct: 585 IDTAFELLEEMSKRGLKLSPRSYSNLVR 612


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + + L ++  + R F  A   L      G   N  +  + I  LC SG +EEA
Sbjct: 239 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 298

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
           F     +++ G+     T+ + + G  K  R++    L  ++         +    LI  
Sbjct: 299 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 358

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +G   E ++++++++  G+ P    ++ L+   C+     R S LL  MV  +  PD
Sbjct: 359 FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 418

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G  +   + +A+R+ ++++  G  P+   Y+ +IHGLC+ G    A  +  
Sbjct: 419 TITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 478

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL PN + Y  +I GYCR  N+  A  +  +M           YN+LI GL   G
Sbjct: 479 EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 538

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R +E+   F +M ++G+  +  TY+ LI GY K G +
Sbjct: 539 RVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 575



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 171/372 (45%), Gaps = 48/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ + +++   L ++   + A D L+   + G  PN       I   C  G +  A
Sbjct: 449 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 508

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F K+ ++ V   +  +NS + G  K+ R +   K +  + E G L         I  
Sbjct: 509 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 568

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----- 263
           +  +G +    +L++++L+ GL P +  +  L+  + +  +  +VS    +M+ +     
Sbjct: 569 YLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 628

Query: 264 NR------------------------------APDNFTYEEVINGLCKSRKRLEAYRVFN 293
           NR                               PD   Y  +I+GLCK+  R +A+ + +
Sbjct: 629 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 688

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ ++G  P+ V Y  +I GLCK G +  AR ++  ++ KGL+PN  TY S+I G C++ 
Sbjct: 689 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 748

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++  A  L+ EML  G       Y+ L  G    G  ++A  L EEM  +G    + ++N
Sbjct: 749 DISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFN 807

Query: 414 TLIQGYCKEGKI 425
            L+ G+CK GK+
Sbjct: 808 NLVDGFCKRGKM 819



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 10/310 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AFK+  + + + G  PN  + +  ++ LC+ G ++ A     ++          T+N  +
Sbjct: 368 AFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 426

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  +       ++L  ++  +G          +I   C  G+  +  +LL ++   GL 
Sbjct: 427 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 486

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    +  LIS +C + N     E+   M   N  PD + Y  +I GL K  +  E+ + 
Sbjct: 487 PNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 546

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F  ++ERG +P+   Y+ +IHG  K G L  A ++   M+  GL PN+  Y  ++  Y +
Sbjct: 547 FAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 606

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D++E+     K MLD+G       Y  LI  L   G  + A+ +   + + G   DV  
Sbjct: 607 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 666

Query: 412 YNTLIQGYCK 421
           Y++LI G CK
Sbjct: 667 YSSLISGLCK 676



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 150/338 (44%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  PD  +   L + L ++R     K  +D +      PN       I      G  +E
Sbjct: 308 YGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADE 367

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKI---DRTDLVWKLY------HDLIESGYLIQ 207
           AF    ++   GV  +  T+++ + G  K+   DR  L+ K         D I    +I+
Sbjct: 368 AFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 427

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                    + + LL ++   G+ P    ++ +I   C+     + S+LL  M  +   P
Sbjct: 428 GHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKP 487

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + F Y  +I+G C+      A  +F+ + +   +PD   Y ++I GL K+G + ++ K +
Sbjct: 488 NAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYF 547

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M  +GLLPNE+TY+ +IHGY +  +LE A++L + MLD G     V Y  L+      
Sbjct: 548 AQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS 607

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              ++    F+ M  +G+  D   Y  LI      G +
Sbjct: 608 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 645



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 153/336 (45%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++ N++ +      + K A   L   ++ G SPN  +  + I  LC+SG  E+A   
Sbjct: 417 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 476

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND-------- 212
             ++   G+  +   +   + G  +     L  +++  + +   L   +C +        
Sbjct: 477 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 536

Query: 213 -GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V E  +   Q+ E GL+P    ++ LI  + +  +     +L+  M+     P++  
Sbjct: 537 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 596

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y +++    KS    +    F  + ++G + D  +Y  +IH L   G +  A ++   + 
Sbjct: 597 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 656

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G +P+ + Y+S+I G C+  + E+A  +  EM  KG     V YN LI GLC  G   
Sbjct: 657 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 716

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            A ++F  +  KG+  + +TY +LI G CK G I N
Sbjct: 717 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISN 752



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 111/221 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  +   G+V +  E++  + + G+ P     N L+           + ++   MV   
Sbjct: 180 LVDTYKKSGRVQDAAEVVLMMRDRGMAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG 239

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD +TY  +I   CK R+   A +V  +++ERG   +TV Y  +I GLC+ G + +A 
Sbjct: 240 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 299

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
               +M   GL+P+ +TY ++I+G C+     EAK L  EM         V Y  LI G 
Sbjct: 300 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 359

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G  DEA+ + +EM   G+  + ITY+ L++G CK G++
Sbjct: 360 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 400



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 160/365 (43%), Gaps = 38/365 (10%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFS 135
           L    N+  + R    +  + G  PD+   + L   L +     +AF + +D +   G  
Sbjct: 639 LSSSGNMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFGI-LDEMSKKGVD 696

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN       I  LC+SG I  A   F+ +   G+  +  T+ S + G  K+      + L
Sbjct: 697 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 756

Query: 196 YHDLIESGYLIQAFC---------NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           Y++++ +G    AF          + G + +   L+ ++   G     ++FN L+  FC+
Sbjct: 757 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCK 815

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +       +LLH ++ R   P+  T E +I+GL ++ K  E + +F +L+++        
Sbjct: 816 RGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARH 875

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +++                ++ +MI++G +P +   + MI  +C+  NL++A  L   ++
Sbjct: 876 FSS----------------LFMDMINQGKIPLD-VVDDMIRDHCKEGNLDKALMLRDVIV 918

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-----VITYNTLIQGYCK 421
            K       +Y  ++  LC  G+  EA +L +EM ++GI        ++  N    GY +
Sbjct: 919 AKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHTSGYIQ 978

Query: 422 EGKIV 426
           E   V
Sbjct: 979 EHNTV 983


>gi|359482689|ref|XP_003632809.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Vitis vinifera]
          Length = 879

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 191/436 (43%), Gaps = 53/436 (12%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWL-HSHYG 101
           + K + ++  T  +WE+ L +                L +  +V L ++FF W+    Y 
Sbjct: 30  LVKDILEVLHTHNQWEENLQTRFSESEVLASDVAHLVLDRIRDVELGLKFFDWVSRGQYS 89

Query: 102 FSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
              +  + + L   L  +R F   +V ++ +     SP   ++ + IQ   +SGL+E+A 
Sbjct: 90  GPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKAL 149

Query: 159 -CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE-------------SGY 204
              +  LK    F  +   NS L   +K+ R ++  KLY +++E             +  
Sbjct: 150 ELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCI 209

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C +GK+ EG +L+      G +P    +N LI  +C+K +    + L   +  + 
Sbjct: 210 MVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKG 269

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV----------------------- 301
             P   TY  +ING CK        R+  ++  RG                         
Sbjct: 270 FLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAV 329

Query: 302 ------------PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
                       PD V Y T+I G C+ G + +A ++  + + KGL+PN+++Y  +IH Y
Sbjct: 330 ETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAY 389

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+    + A     EM ++G+    VTY  L+ GL + G  D A  + E+M ++G+F D 
Sbjct: 390 CKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDA 449

Query: 410 ITYNTLIQGYCKEGKI 425
             YN L+ G CK+ K+
Sbjct: 450 GIYNILMSGLCKKFKL 465



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 156/334 (46%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+++  N L D   +    ++A      L   GF P   +    I   C+ G  +  
Sbjct: 234 GCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKAI 293

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G+  +++ +N+ +    K        +    +IE G          LI  
Sbjct: 294 DRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVTYNTLISG 353

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGKVSE  +LL Q L  GL+P   ++  LI  +C++  + R S  L  M  R   PD
Sbjct: 354 SCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPD 413

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GL  + +   A  +   + ERG  PD  +Y  ++ GLCK   L  A+ +  
Sbjct: 414 LVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLA 473

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ + +LP+ + Y +++ G+ R  NL+EA++L +  ++KG     V YN +I G C  G
Sbjct: 474 EMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFG 533

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
              +A      M ++ +  D  TY+T+I GY K+
Sbjct: 534 MMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQ 567



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 146/330 (44%), Gaps = 29/330 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L            A   L+     G  PN  S    I   C+ G  + A
Sbjct: 339 GCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRA 398

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++ E G                             DL+  G L+      G+V  
Sbjct: 399 SNWLIEMTERG--------------------------HKPDLVTYGALVHGLVVAGEVDV 432

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +  ++LE G+ P+   +N L+S  C+K        LL  M+ ++  PD F Y  +++
Sbjct: 433 ALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVD 492

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  ++    EA ++F    E+G  P  V Y  +I G CK G + DA      M  + L P
Sbjct: 493 GFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAP 552

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +E+TY+++I GY +  +L+ A+++ +EM+        VTY +LI G C  G    +  +F
Sbjct: 553 DEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIF 612

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            EM   G+  +V+TY+ LI  +CKE K+++
Sbjct: 613 REMQACGLVPNVVTYSILIGSFCKEAKLID 642



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 161/386 (41%), Gaps = 51/386 (13%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD------------------ 130
           ++  + ++   Y + PD+++CN L + LV+    ++A    D                  
Sbjct: 148 ALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYST 207

Query: 131 ------------------------STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
                                     G  PN       I   C+ G +E A   F +LK 
Sbjct: 208 CIMVKGLCKEGKLEEGRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKL 267

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
            G   +++T+ + + G  K      + +L  ++   G          +I A    G + +
Sbjct: 268 KGFLPTVETYGAIINGFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVK 327

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E +  ++E G  P+   +N LIS  C         +LL   + +   P+ F+Y  +I+
Sbjct: 328 AVETIEGMIECGCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIH 387

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
             CK      A     ++ ERG+ PD V Y  ++HGL   G +  A  +  +M+ +G+ P
Sbjct: 388 AYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFP 447

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +   YN ++ G C+   L  AK L  EMLD+        Y TL+ G   +G  DEA  LF
Sbjct: 448 DAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLF 507

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
           E   +KG+   ++ YN +I+GYCK G
Sbjct: 508 ELTIEKGMNPGIVGYNAMIKGYCKFG 533



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 82/362 (22%), Positives = 157/362 (43%), Gaps = 28/362 (7%)

Query: 91  RFFQWL--HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           R   WL   +  G  PDLV+   L   LV A    VA+   +     G  P+     + +
Sbjct: 397 RASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILM 456

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC+   +  A    +++ +  V      + + + G I+    D   KL+   IE G  
Sbjct: 457 SGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMN 516

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   +I+ +C  G + +    + ++ +  L P+   ++ +I  + ++ +     ++
Sbjct: 517 PGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKM 576

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              MV     P+  TY  +ING C+      + ++F +++  G VP+ V Y+ +I   CK
Sbjct: 577 FREMVKMKCKPNVVTYTSLINGFCRKGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCK 636

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR---------IDNLEEAKR-----LH 362
              L DA   + EM+    +PN+ T+N +++G+ +          +  +E K+       
Sbjct: 637 EAKLIDAASFFEEMLMNKCVPNDVTFNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFF 696

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             M+  G+   +  YN+++  LC +G    A  L  +M  KG   D +++  L+ G C E
Sbjct: 697 GRMISDGWAPRSAAYNSILICLCQYGMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLE 756

Query: 423 GK 424
           G+
Sbjct: 757 GR 758



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 64/323 (19%), Positives = 136/323 (42%), Gaps = 27/323 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD      L D  +       A    + T   G +P        I+  C+ G++++A   
Sbjct: 482 PDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMAC 541

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
            +++K+  +     T+++ + G +K    D   K++ ++++            LI  FC 
Sbjct: 542 INRMKKRHLAPDEFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVVTYTSLINGFCR 601

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    ++ R++   GLVP    ++ LI  FC++      +     M+     P++ T
Sbjct: 602 KGDLHRSLKIFREMQACGLVPNVVTYSILIGSFCKEAKLIDAASFFEEMLMNKCVPNDVT 661

Query: 272 YEEVINGLCKSRKRLEAYR--------------VFNDLKERGYVPDTVMYTTVIHGLCKM 317
           +  ++NG  K+  R  + +               F  +   G+ P +  Y +++  LC+ 
Sbjct: 662 FNYLVNGFSKNGTRAISEKGNEFQENKQSMFLNFFGRMISDGWAPRSAAYNSILICLCQY 721

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G    A ++  +M  KG +P+  ++ +++HG C     +E K +    L++   +  V Y
Sbjct: 722 GMFRTALQLSNKMTSKGCIPDSVSFVALLHGVCLEGRSKEWKNIVSCNLNERELQIAVNY 781

Query: 378 NTLIAGLCLHGRTDEAYHLFEEM 400
           ++++      G T EA  + + M
Sbjct: 782 SSILDQYLPQG-TSEASVILQTM 803



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 4/164 (2%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM--YTT--VIHGLCKMGWLGD 322
           PD      ++N L K  +   A ++++++ E     D  +  Y+T  ++ GLCK G L +
Sbjct: 163 PDVIACNSLLNMLVKLGRIEIARKLYDEMLEIDGAGDRCVDNYSTCIMVKGLCKEGKLEE 222

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
            RK+  +   +G +PN   YN++I GYC+  ++E A  L  E+  KG+  T  TY  +I 
Sbjct: 223 GRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIIN 282

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G C  G       L  EM  +G+  +V  YNT+I    K G IV
Sbjct: 283 GFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIV 326


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 157/324 (48%), Gaps = 30/324 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P +++ N +  +L +A +   A  F DS    G +PN  +  + I+ LC  G  +EA
Sbjct: 111 GYVPSVLAYNAVLLALSDA-SLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 ++  G   ++ T+N+                          L+ AF   G+V  
Sbjct: 170 LSILRDMRGAGCGPNVVTYNT--------------------------LVAAFFRAGEVDG 203

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L+  +L+ GL P    FN +++  C+        ++   M+    APD  +Y  ++ 
Sbjct: 204 AERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVG 263

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK+    EA  VF ++ ++G +PD V +T++IH +CK G L  A  +  +M  +GL  
Sbjct: 264 GYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQM 323

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NE T+ ++I G+C+   L++A    + M       + V YN LI G C+ GR DEA  L 
Sbjct: 324 NEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELL 383

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
            EM  KG+  DV+TY+T+I  YCK
Sbjct: 384 HEMEAKGLKPDVVTYSTIISAYCK 407



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 157/337 (46%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ N + + + +A   + A    D     G +P+  S    +   C++G   EA
Sbjct: 215 GLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEA 274

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++ + G+   + T+ S +    K    +    L   + E G          LI  
Sbjct: 275 LSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDG 334

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + +    +R + +  + P    +N LI+ +C         ELLH M A+   PD
Sbjct: 335 FCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPD 394

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  CK+     A+ +   + E+G +PD + Y+++I  LC+   L DA  ++ 
Sbjct: 395 VVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFK 454

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  GL P+E+TY S+I G+C+  N+E A  LH +M+  G     VTY+ LI GL    
Sbjct: 455 NMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSA 514

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  EA  L  ++  +        Y+ L+   C++ ++
Sbjct: 515 RAMEAQQLLFKLYHEEPIPANTKYDALMH-CCRKAEL 550



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 127/267 (47%), Gaps = 10/267 (3%)

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
           G   S+  +N+ LL       T    + +  ++  G          LI+A C  G   E 
Sbjct: 111 GYVPSVLAYNAVLLALSDASLTS-ARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEA 169

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +LR +   G  P    +N L++ F           L+  M+     P+  T+  ++NG
Sbjct: 170 LSILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNG 229

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           +CK+ K  +A +VF+++   G  PD V Y T++ G CK G   +A  ++ EM  KG++P+
Sbjct: 230 MCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPD 289

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             T+ S+IH  C+  NLE A  L ++M ++G     VT+  LI G C  G  D+A     
Sbjct: 290 VVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVR 349

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            M Q  I   V+ YN LI GYC  G++
Sbjct: 350 GMRQCRIKPSVVCYNALINGYCMVGRM 376



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 164/353 (46%), Gaps = 27/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   L   + +A   + A+     +   G   N  +    I   C+ G +++A
Sbjct: 285 GIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             A   +++  +  S+  +N+ + G   + R D   +L H         D++    +I A
Sbjct: 345 LLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISA 404

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +      +EL +Q+LE G++P+   ++ LI   CE+K       L   M+     PD
Sbjct: 405 YCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPD 464

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I+G CK      A  + + + + G +PD V Y+ +I+GL K     +A+++ F
Sbjct: 465 EFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLLF 524

Query: 329 EMIHKGLLPNEYTYNSMIH---------------GYCRIDNLEEAKRLHKEMLDKGYGET 373
           ++ H+  +P    Y++++H               G+C    + EA ++++ MLD+ +   
Sbjct: 525 KLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLD 584

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              Y+ LI G C  G   +A    ++M Q+G   +  +  +LI+G  + G +V
Sbjct: 585 GSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVV 637


>gi|356518050|ref|XP_003527697.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g11690-like [Glycine max]
          Length = 556

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 150/327 (45%), Gaps = 29/327 (8%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G SP++V    L D   +     +A +    +D  G  PNP++  + +    + GL  E
Sbjct: 187 FGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQRE 246

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
            F  +  +K  G+  +   +N                           LI  +CN G V 
Sbjct: 247 GFQMYENMKRSGIVPNAYAYNC--------------------------LISEYCNGGMVD 280

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           + +++  ++ E G+      +N LI   C  K FG   +L+H +     +P+  TY  +I
Sbjct: 281 KAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILI 340

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG C   K   A R+FN LK  G  P  V Y T+I G  K+  L  A  +  EM  + + 
Sbjct: 341 NGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIA 400

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P++ TY  +I  + R++  E+A  +H  M   G      TY+ LI GLC+HG   EA  L
Sbjct: 401 PSKVTYTILIDAFARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKL 460

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           F+ + +  +  + + YNT+I GYCKEG
Sbjct: 461 FKSLGEMHLQPNSVIYNTMIHGYCKEG 487



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 137/293 (46%), Gaps = 9/293 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           +  +G  PN  +    I   C  G++++AF  F++++E G+   + T+N  + G  +  +
Sbjct: 254 MKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKK 313

Query: 189 TDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                KL H         +++    LI  FC+ GK+     L  Q+   GL P    +N 
Sbjct: 314 FGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNT 373

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI+ + + +N     +L+  M  R  AP   TY  +I+   +     +A  + + +++ G
Sbjct: 374 LIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDAFARLNYTEKACEMHSLMEKSG 433

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            VPD   Y+ +IHGLC  G + +A K++  +    L PN   YN+MIHGYC+  +   A 
Sbjct: 434 LVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRAL 493

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           RL  EM+  G      ++ + I  LC   +  EA  L  +M   G+   V  Y
Sbjct: 494 RLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 137/317 (43%), Gaps = 11/317 (3%)

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGS 172
           L+  R     M  L    F+P      LY   +     S   ++A      +   G    
Sbjct: 64  LISGRIPSSLMLQLTQAHFTPCLTYTPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPL 123

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIES--------GYLIQAFCNDGKVSEGYELLRQ 224
             T+N+ +   I+ +  D  W ++++L           G +I+  C  G   +G+ LL  
Sbjct: 124 SNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAM 183

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + E GL P    +  LI   C+  N      L   M      P+  TY  ++NG  K   
Sbjct: 184 LEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGL 243

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
           + E ++++ ++K  G VP+   Y  +I   C  G +  A K++ EM  KG+     TYN 
Sbjct: 244 QREGFQMYENMKRSGIVPNAYAYNCLISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNI 303

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G CR     EA +L  ++   G     VTYN LI G C  G+ D A  LF ++   G
Sbjct: 304 LIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSG 363

Query: 405 IFRDVITYNTLIQGYCK 421
           +   ++TYNTLI GY K
Sbjct: 364 LSPTLVTYNTLIAGYSK 380



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 103/200 (51%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L+  +V +  +F  +I   CE   F +   LL  +     +P+   Y  +I+G CK    
Sbjct: 150 LKSKVVLDAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNV 209

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
           + A  +F  +   G VP+   Y+ +++G  K G   +  +M+  M   G++PN Y YN +
Sbjct: 210 MLAKNLFCKMDRLGLVPNPHTYSVLMNGFFKQGLQREGFQMYENMKRSGIVPNAYAYNCL 269

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I  YC    +++A ++  EM +KG     +TYN LI GLC   +  EA  L  ++ + G+
Sbjct: 270 ISEYCNGGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGL 329

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             +++TYN LI G+C  GK+
Sbjct: 330 SPNIVTYNILINGFCDVGKM 349



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 58/257 (22%), Positives = 104/257 (40%), Gaps = 47/257 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +  +++ N+L   L   + F  A+  +   +  G SPN  +  + I   C+ G ++ A
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTA 352

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKL------------------ 195
              F++LK  G+  ++ T+N+ + G  K++      DLV ++                  
Sbjct: 353 VRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIAPSKVTYTILIDA 412

Query: 196 ------------YHDLIE-SG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                        H L+E SG          LI   C  G + E  +L + + E  L P 
Sbjct: 413 FARLNYTEKACEMHSLMEKSGLVPDVYTYSVLIHGLCVHGNMKEASKLFKSLGEMHLQPN 472

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           +  +N +I  +C++ +  R   LL+ MV     P+  ++   I  LC+  K  EA  +  
Sbjct: 473 SVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTIGLLCRDEKWKEAELLLG 532

Query: 294 DLKERGYVPDTVMYTTV 310
            +   G  P   +Y  V
Sbjct: 533 QMINSGLKPSVSLYKMV 549



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 12/207 (5%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY----EEVI 276
           +L  +L  G++P+  +   LI R       GR+   L   + +       TY    + ++
Sbjct: 44  ILNHLLSSGMLPQAQS---LILRLIS----GRIPSSLMLQLTQAHFTPCLTYTPLYDTIV 96

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           N    S    +A    + +   G+VP +  +  ++  L +  +   A  ++ E+  K +L
Sbjct: 97  NAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFNELKSKVVL 156

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            + Y++  MI G C      +  RL   + + G     V Y TLI G C +G    A +L
Sbjct: 157 -DAYSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYGNVMLAKNL 215

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           F +M + G+  +  TY+ L+ G+ K+G
Sbjct: 216 FCKMDRLGLVPNPHTYSVLMNGFFKQG 242



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T +Y T+++          A      MIH+G +P   T+N+++    R +  ++A  +  
Sbjct: 89  TPLYDTIVNAYVHSHSTDQALTFLHHMIHEGHVPLSNTFNNLMCLLIRSNYFDKAWWIFN 148

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E+  K   +   ++  +I G C  G   + + L   + + G+  +V+ Y TLI G CK G
Sbjct: 149 ELKSKVVLDA-YSFGIMIKGCCEAGYFVKGFRLLAMLEEFGLSPNVVIYTTLIDGCCKYG 207

Query: 424 KIV 426
            ++
Sbjct: 208 NVM 210


>gi|224069551|ref|XP_002326371.1| predicted protein [Populus trichocarpa]
 gi|222833564|gb|EEE72041.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 152/314 (48%), Gaps = 10/314 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           A+KV  + + + G   N  S    I  LCE+G I+E    F K++E   + +++T+   +
Sbjct: 268 AYKV-FNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDDCYPTVRTYTVII 326

Query: 181 LGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
                 DR      L++++ E            ++ A C + K+ E   +L +++E GLV
Sbjct: 327 HALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLV 386

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    +N LI  +CE+       E+L  M + N  P+  TY E+I G  K +   +A  +
Sbjct: 387 PSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKAMTL 446

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            + + E    P  V Y ++IH  CK G    A K+   +   GL+P+++TY+  I   C+
Sbjct: 447 LSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCK 506

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +EEA  L   + +KG     V Y  LI G C  G+ DEA  L E M  +    +  T
Sbjct: 507 SKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSST 566

Query: 412 YNTLIQGYCKEGKI 425
           YN+LI G CKEGK+
Sbjct: 567 YNSLIYGVCKEGKV 580



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 11/300 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN ++  + +  +C+   ++E+    +++ E G+  S+ T+N+ + G  +  R +   ++
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411

Query: 196 YHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
              L+ES            LI  F     V +   LL ++LE  L P    +N LI   C
Sbjct: 412 L-GLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQC 470

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +  +F    +LL  +      PD +TY   I+ LCKS++  EA  +FN LKE+G   + V
Sbjct: 471 KAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEV 530

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           MYT +I G CK G + +A  +   M  +  LPN  TYNS+I+G C+   ++E   + + M
Sbjct: 531 MYTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENM 590

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G   T  TY  LI  +   G  D A  +F +M   G   DV TY   I  YC  G +
Sbjct: 591 SKMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNV 650



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 63/211 (29%), Positives = 107/211 (50%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + E   +  ++L D +VP     N +++ + +  N    +  +  +     +PD+FTY  
Sbjct: 195 IDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTS 254

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I G C++     AY+VFN +  +G   + V YTT+IHGLC+ G + +   ++ +M    
Sbjct: 255 LILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRIDEGISLFKKMREDD 314

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             P   TY  +IH     D   E   L  EM ++       TY  ++  +C   + DE+ 
Sbjct: 315 CYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVDAMCKERKLDESR 374

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  EM +KG+   V+TYN LI+GYC+EG+I
Sbjct: 375 RILNEMMEKGLVPSVVTYNALIRGYCEEGRI 405



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 140/332 (42%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ +  V+ D++ + R    +   L+     G  P+  +    I+  CE G IE A   
Sbjct: 352 PNVHTYTVMVDAMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEI 411

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
              ++      + +T+N  + G  K         L   ++ES           LI   C 
Sbjct: 412 LGLMESNNCRPNERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCK 471

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G     Y+LL  + E+GLVP+   ++  I   C+ K      +L +++  +    +   
Sbjct: 472 AGHFDSAYKLLDLLKENGLVPDQWTYSVFIDTLCKSKRMEEACDLFNSLKEKGIKANEVM 531

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK+ K  EA  +   +     +P++  Y ++I+G+CK G + +   M   M 
Sbjct: 532 YTALIDGHCKAGKIDEAISLLERMHSEDCLPNSSTYNSLIYGVCKEGKVQEGLSMVENMS 591

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P   TY  +I    R  + + A R+  +M+  G+     TY   I   C  G   
Sbjct: 592 KMGVKPTVATYTILIEEMLREGDFDHANRVFNQMVSFGHKPDVYTYTAFIHTYCTSGNVK 651

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EA  +   M + G+  D +TY  LI  Y + G
Sbjct: 652 EAEGMMARMIEAGVMPDSLTYTLLISAYERLG 683



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 141/328 (42%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L     E    + A++ L   +S    PN  +    I    +   + +A
Sbjct: 384 GLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRPNERTYNELICGFSKRKHVHKA 443

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
               SK+ E  +  S+ T+NS +    K    D  +KL   L E+G +         I  
Sbjct: 444 MTLLSKMLESKLTPSLVTYNSLIHVQCKAGHFDSAYKLLDLLKENGLVPDQWTYSVFIDT 503

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   ++ E  +L   + E G+      +  LI   C+         LL  M + +  P+
Sbjct: 504 LCKSKRMEEACDLFNSLKEKGIKANEVMYTALIDGHCKAGKIDEAISLLERMHSEDCLPN 563

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I G+CK  K  E   +  ++ + G  P    YT +I  + + G    A +++ 
Sbjct: 564 SSTYNSLIYGVCKEGKVQEGLSMVENMSKMGVKPTVATYTILIEEMLREGDFDHANRVFN 623

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G  P+ YTY + IH YC   N++EA+ +   M++ G    ++TY  LI+     G
Sbjct: 624 QMVSFGHKPDVYTYTAFIHTYCTSGNVKEAEGMMARMIEAGVMPDSLTYTLLISAYERLG 683

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
              +A+++ + M   G       +N LI
Sbjct: 684 LAYDAFNVLKRMLDAGCDPSHPIWNNLI 711



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 126/291 (43%), Gaps = 32/291 (10%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +L   +    + G I EA    SK+ + G+     T+ S +LG             
Sbjct: 212 PNIYTLNTMVNAYSKMGNIVEANLYVSKIFQAGLSPDSFTYTSLILG------------- 258

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                        +C +  V+  Y++   +   G      ++  +I   CE    GR+ E
Sbjct: 259 -------------YCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEA---GRIDE 302

Query: 256 ---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              L   M   +  P   TY  +I+ L  + + LE   +FN+++ER   P+   YT ++ 
Sbjct: 303 GISLFKKMREDDCYPTVRTYTVIIHALFGNDRNLEGMDLFNEMRERSCEPNVHTYTVMVD 362

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            +CK   L ++R++  EM+ KGL+P+  TYN++I GYC    +E A  +   M       
Sbjct: 363 AMCKERKLDESRRILNEMMEKGLVPSVVTYNALIRGYCEEGRIEAALEILGLMESNNCRP 422

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              TYN LI G        +A  L  +M +  +   ++TYN+LI   CK G
Sbjct: 423 NERTYNELICGFSKRKHVHKAMTLLSKMLESKLTPSLVTYNSLIHVQCKAG 473



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 35/119 (29%), Positives = 67/119 (56%)

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  ++  L +   + + ++++ EM++  ++PN YT N+M++ Y ++ N+ EA     ++ 
Sbjct: 182 YNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKIF 241

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G    + TY +LI G C +   + AY +F  M  KG  R+ ++Y T+I G C+ G+I
Sbjct: 242 QAGLSPDSFTYTSLILGYCRNNDVNSAYKVFNMMPNKGCRRNEVSYTTIIHGLCEAGRI 300



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 41/85 (48%)

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           +YN ++    R   ++E KR++ EML+        T NT++      G   EA     ++
Sbjct: 181 SYNELLMMLARFLMIDEMKRVYTEMLNDMIVPNIYTLNTMVNAYSKMGNIVEANLYVSKI 240

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            Q G+  D  TY +LI GYC+   +
Sbjct: 241 FQAGLSPDSFTYTSLILGYCRNNDV 265


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + + L ++  + R F  A   L      G   N  +  + I  LC SG +EEA
Sbjct: 112 GISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEA 171

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
           F     +++ G+     T+ + + G  K  R++    L  ++         +    LI  
Sbjct: 172 FGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDG 231

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +G   E ++++++++  G+ P    ++ L+   C+     R S LL  MV  +  PD
Sbjct: 232 FMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPD 291

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G  +   + +A+R+ ++++  G  P+   Y+ +IHGLC+ G    A  +  
Sbjct: 292 TITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLE 351

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL PN + Y  +I GYCR  N+  A  +  +M           YN+LI GL   G
Sbjct: 352 EMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVG 411

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R +E+   F +M ++G+  +  TY+ LI GY K G +
Sbjct: 412 RVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 448



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 171/372 (45%), Gaps = 48/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ + +++   L ++   + A D L+   + G  PN       I   C  G +  A
Sbjct: 322 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 381

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F K+ ++ V   +  +NS + G  K+ R +   K +  + E G L         I  
Sbjct: 382 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 441

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----- 263
           +  +G +    +L++++L+ GL P +  +  L+  + +  +  +VS    +M+ +     
Sbjct: 442 YLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 501

Query: 264 NR------------------------------APDNFTYEEVINGLCKSRKRLEAYRVFN 293
           NR                               PD   Y  +I+GLCK+  R +A+ + +
Sbjct: 502 NRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 561

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ ++G  P+ V Y  +I GLCK G +  AR ++  ++ KGL+PN  TY S+I G C++ 
Sbjct: 562 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 621

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++  A  L+ EML  G       Y+ L  G    G  ++A  L EEM  +G    + ++N
Sbjct: 622 DISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFN 680

Query: 414 TLIQGYCKEGKI 425
            L+ G+CK GK+
Sbjct: 681 NLVDGFCKRGKM 692



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/310 (26%), Positives = 142/310 (45%), Gaps = 10/310 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AFK+  + + + G  PN  + +  ++ LC+ G ++ A     ++          T+N  +
Sbjct: 241 AFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 299

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  +       ++L  ++  +G          +I   C  G+  +  +LL ++   GL 
Sbjct: 300 EGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 359

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    +  LIS +C + N     E+   M   N  PD + Y  +I GL K  +  E+ + 
Sbjct: 360 PNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 419

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F  ++ERG +P+   Y+ +IHG  K G L  A ++   M+  GL PN+  Y  ++  Y +
Sbjct: 420 FAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 479

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D++E+     K MLD+G       Y  LI  L   G  + A+ +  E+ + G   DV  
Sbjct: 480 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHV 539

Query: 412 YNTLIQGYCK 421
           Y++LI G CK
Sbjct: 540 YSSLISGLCK 549



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 153/336 (45%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++ N++ +        K A   L   ++ G SPN  +  + I  LC+SG  E+A   
Sbjct: 290 PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 349

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND-------- 212
             ++   G+  +   +   + G  +     L  +++  + +   L   +C +        
Sbjct: 350 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 409

Query: 213 -GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V E  +   Q+ E GL+P    ++ LI  + +  +     +L+  M+     P++  
Sbjct: 410 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 469

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y +++    KS    +    F  + ++G + D  +Y  +IH L   G +  A ++  E+ 
Sbjct: 470 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIE 529

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G +P+ + Y+S+I G C+  + E+A  +  EM  KG     V YN LI GLC  G   
Sbjct: 530 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 589

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            A ++F  +  KG+  + +TY +LI G CK G I N
Sbjct: 590 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISN 625



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 111/221 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  +   G+V +  E++  + + GL P     N L+           + ++   MV   
Sbjct: 53  LVDTYKKSGRVQDAAEVVLMMRDRGLAPSIRCCNALLKDLLRADAMALLWKVREFMVGAG 112

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD +TY  +I   CK R+   A +V  +++ERG   +TV Y  +I GLC+ G + +A 
Sbjct: 113 ISPDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAF 172

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
               +M   GL+P+ +TY ++I+G C+     EAK L  EM         V Y  LI G 
Sbjct: 173 GFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGF 232

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G  DEA+ + +EM   G+  + ITY+ L++G CK G++
Sbjct: 233 MREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 273



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 172/408 (42%), Gaps = 65/408 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           ++ NV L+   F  + +     PDL   N L   L +    + +  +   +   G  PN 
Sbjct: 374 REGNVSLACEIFDKM-TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 432

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I    ++G +E A     ++ + G+  +   +   L    K D  + V   +  
Sbjct: 433 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKS 492

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +++ G          LI    + G +   + +L ++ ++G VP+   ++ LIS  C+  +
Sbjct: 493 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTAD 552

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             +   +L  M  +   P+   Y  +I+GLCKS     A  VFN +  +G VP+ V YT+
Sbjct: 553 REKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 612

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY--------------------------- 342
           +I G CK+G + +A  ++ EM+  G+ P+ + Y                           
Sbjct: 613 LIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 672

Query: 343 -------NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
                  N+++ G+C+   ++E  +L   ++ +G     +T   +I+GL   G+  E + 
Sbjct: 673 HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHT 732

Query: 396 LFEEMAQK----------GIFRDVI--------TYNTLIQGYCKEGKI 425
           +F E+ QK           +F D+I          + +I+ +CKEG +
Sbjct: 733 IFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNL 780



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 151/338 (44%), Gaps = 33/338 (9%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFS 135
           L    N+  + R    +  + G  PD+   + L   L +     +AF + +D +   G  
Sbjct: 512 LSSSGNMEAAFRVLSEIEKN-GSVPDVHVYSSLISGLCKTADREKAFGI-LDEMSKKGVD 569

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN       I  LC+SG I  A   F+ +   G+  +  T+ S + G  K+      + L
Sbjct: 570 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 629

Query: 196 YHDLIESGYLIQAFC---------NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           Y++++ +G    AF          + G + +   L+ ++   G     ++FN L+  FC+
Sbjct: 630 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCK 688

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +       +LLH ++ R   P+  T E +I+GL ++ K  E + +F +L+++        
Sbjct: 689 RGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARH 748

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +++                ++ +MI++G +P +   + MI  +C+  NL++A  L   ++
Sbjct: 749 FSS----------------LFMDMINQGKIPLD-VVDDMIRDHCKEGNLDKALMLRDVIV 791

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
            K       +Y  ++  LC  G+  EA +L +EM ++G
Sbjct: 792 AKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 829



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 94/273 (34%), Gaps = 64/273 (23%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G  P++V  N L D L ++     A +  +S    G  PN  +    I   C+ G I
Sbjct: 564 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 623

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LI 206
             AF  ++++   G+      ++    GC      +    L  ++   G+        L+
Sbjct: 624 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLV 683

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV------------- 253
             FC  GK+ E  +LL  ++  GLVP       +IS   E      V             
Sbjct: 684 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 743

Query: 254 ------SELLHTMVARNRAPDNF----------------------------------TYE 273
                 S L   M+ + + P +                                   +Y 
Sbjct: 744 SAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYL 803

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            +++ LC+  K  EA  +  ++ +RG +  T++
Sbjct: 804 AIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLV 836


>gi|449489553|ref|XP_004158346.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 173/404 (42%), Gaps = 65/404 (16%)

Query: 87  LLSIRFFQWLHSHYGFSPDLVS--CNVLFDSLVEARAFKVAMDFL-------DSTGF--- 134
           +L+++F +W+    G  P+ ++    +    LV AR +  A   L         + F   
Sbjct: 33  VLALKFLKWVIKQPGLEPNHLTHILGITTHVLVRARLYGYAKSILKHLAQKNSGSNFLFG 92

Query: 135 ---------SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
                    S NP   +L I+     G++  A   FS +   G   S+ T N  +   +K
Sbjct: 93  VLMDTYPLCSSNPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVK 152

Query: 186 IDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R  LVW  +  ++ S           LI   C  GK+ +   +L  +  +G VP   +
Sbjct: 153 NCRAHLVWXFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVS 212

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N L+S  C+K  F     L+H M  +    D  TY   I+ LC++ +  + Y V   ++
Sbjct: 213 YNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMR 272

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +   P+ V Y T+I+G  K G +G A +++ EMI   L PN  TYN +I+GYC   N E
Sbjct: 273 NKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFE 332

Query: 357 EAKRLHKEMLDKGYGETTVTYNTL-----------------------------------I 381
           EA RL   M         VT  TL                                   I
Sbjct: 333 EALRLLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYSINRTSLNCISHTVMI 392

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GLC +G  DEA+ L  EM + G++ D+IT++ LI G+CK G +
Sbjct: 393 DGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLINGFCKVGNL 436



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/328 (28%), Positives = 155/328 (47%), Gaps = 33/328 (10%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLE-----LYIQCLCESGLIEEAF 158
           P+ V+   L + L ++  F VA + L+   +S N  SL      + I  LC +GL++EAF
Sbjct: 348 PNEVTIGTLLNGLYKSAKFDVARNILER--YSINRTSLNCISHTVMIDGLCRNGLLDEAF 405

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               ++ + GV                          Y D+I    LI  FC  G +++ 
Sbjct: 406 QLLIEMCKDGV--------------------------YPDIITFSVLINGFCKVGNLNKA 439

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            E++ ++  +G VP N  F+ LI   C+  N     +    M    +  DNFT   ++  
Sbjct: 440 KEVMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSLVAS 499

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LC++ K +EA    + +   G VP++V +  +I+G   +G    A  ++ +MI  G  P+
Sbjct: 500 LCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPS 559

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
            +TY S++   C+  N  EA++L K++        T++YNTLI  +   G   EA  LFE
Sbjct: 560 PFTYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFE 619

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           EM Q  I  D  TY  ++ G  +EG++V
Sbjct: 620 EMIQNNILPDSYTYTCILSGLIREGRLV 647



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 172/405 (42%), Gaps = 82/405 (20%)

Query: 101 GFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P + +CN++  S+V+  RA  V   F  + ++   PN +S  + I  LC  G +++A
Sbjct: 135 GFKPSVYTCNMIMASMVKNCRAHLVWXFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKA 194

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------------IES 202
               + ++  G   +I ++N+ L  C K  R      L H +               I+S
Sbjct: 195 VNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDS 254

Query: 203 ---------GYL--------------------IQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                    GYL                    I  F  +GK+     +  +++E  L P 
Sbjct: 255 LCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPN 314

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK--------- 284
              +N LI+ +C   NF     LL  M A +  P+  T   ++NGL KS K         
Sbjct: 315 LITYNILINGYCINGNFEEALRLLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILE 374

Query: 285 --------------------------RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                                       EA+++  ++ + G  PD + ++ +I+G CK+G
Sbjct: 375 RYSINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVYPDIITFSVLINGFCKVG 434

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L  A+++  ++  +G +PN   ++++I+  C++ N+ E  + +  M   G      T N
Sbjct: 435 NLNKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCN 494

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +L+A LC +G+  EA      +++ G+  + +T++ +I GY   G
Sbjct: 495 SLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVG 539



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 155/367 (42%), Gaps = 54/367 (14%)

Query: 113  FDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
             D L +A   K A+     ++  G S +  +L          G +  A    SK +   V
Sbjct: 673  IDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNV 732

Query: 170  FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYE 220
              ++ T+N  L G  +       +KLY+ +  SG+         LI   CN G +  G +
Sbjct: 733  IPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIK 792

Query: 221  LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
            +L+  + +    ++  FN LI + CE  +  +V +L H M     + D  T + V + L 
Sbjct: 793  MLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLV 852

Query: 281  KSRKRLEAYRVF-NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL---- 335
            + R   + Y VF +++ ++G++P +  Y T++  +C++G +  A K+  +M+  G+    
Sbjct: 853  R-RMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISLDD 911

Query: 336  -------------------------------LPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
                                           +P   T+ +++H +C+ DN +EA  L   
Sbjct: 912  AAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKIL 971

Query: 365  MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG-----Y 419
            M         V YN LI+  C +G    A   +EE+ QKG+  ++ TY  L+       Y
Sbjct: 972  MEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYRVLVSAISTKHY 1031

Query: 420  CKEGKIV 426
               G+IV
Sbjct: 1032 VSRGEIV 1038



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 82/345 (23%), Positives = 149/345 (43%), Gaps = 27/345 (7%)

Query: 101 GFSPDLVSCNVLFDSLV----------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           GF P+    NV+F +L+          E   F  AM+       +   NSL   +  LCE
Sbjct: 450 GFVPN----NVIFSTLIYNSCKVGNVYEGMKFYAAMNLNGQNADNFTCNSL---VASLCE 502

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
           +G + EA      +  +G+  +  T++  + G   +      + ++  +I  G+      
Sbjct: 503 NGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDKMISCGHHPSPFT 562

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L++  C      E  +LL+++    L  +  ++N LI    +  N      L   M+
Sbjct: 563 YGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMI 622

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWL 320
             N  PD++TY  +++GL +  + + A+     L ++  +  ++++YT  I GL K G  
Sbjct: 623 QNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQS 682

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A  ++ EM  KGL  +    NS+  GY R+  +  A  L  +  +K       T+N L
Sbjct: 683 KAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNIL 742

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + G          + L+  M + G F + +TY++LI G C  G +
Sbjct: 743 LHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGML 787



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 27/227 (11%)

Query: 110  NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
            +VL   +V    F V M  +   GF P        ++ +C  G I+ AF    KLK+  V
Sbjct: 849  DVLVRRMVSQNYF-VFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAF----KLKDQMV 903

Query: 170  FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
               I   ++A           +V  L            A C  GK+ E   +L+++L   
Sbjct: 904  ALGISLDDAA--------ECAMVRGL------------ALC--GKIEEAMWILQRMLRMK 941

Query: 230  LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             +P  + F  L+  FC+K NF     L   M       D   Y  +I+  C +   + A 
Sbjct: 942  KIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITAL 1001

Query: 290  RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
              + ++K++G +P+   Y  ++  +    ++     +  ++  +GL+
Sbjct: 1002 DFYEEIKQKGLLPNMTTYRVLVSAISTKHYVSRGEIVLKDLNDRGLV 1048


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 148/284 (52%), Gaps = 9/284 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           ESG + +A   F   K+  ++    T    L   +K+    LVW  Y +++E GY     
Sbjct: 78  ESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILECGYPPSLY 137

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+  FC +G++     +   + +  L P   +FN L++ +    +      L   M
Sbjct: 138 FFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM 197

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            A    PD +TY  +INGLCK  K  EA  + N++ + G VP+ V +TT+I G CK G +
Sbjct: 198 HATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHCKNGKV 257

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+ +G LP+  TYN++I+G CR  +L +A+ L +EM+ KG     +TY TL
Sbjct: 258 DLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDKITYTTL 317

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           I G C  G  +  + L + M ++ I  D +TY  LI G C+EG+
Sbjct: 318 IDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGR 361



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 78/193 (40%), Gaps = 30/193 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S  GF PDL++ N L   L        A D ++     G  P+ 
Sbjct: 253 KNGKVDLAMEIYKQMLSQ-GFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKGLKPDK 311

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G +E  F    +L++  +  +I+                       D
Sbjct: 312 ITYTTLIDGSCKEGDLEITF----ELRKRMIRENIRL----------------------D 345

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +    LI   C +G+  +  ++LR++L  GL P+N  +  +++ FC+  +    S+LL 
Sbjct: 346 EVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLR 405

Query: 259 TMVARNRAPDNFT 271
            M      P   T
Sbjct: 406 EMQRNGPVPGVVT 418


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVD 370



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 229 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +E  Y ++I G C+     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 349 RLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D     G  P+ 
Sbjct: 259 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK 317

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +                 I++D           
Sbjct: 318 ITYTTLIDGCCKEGDLDSAFEHRKRMIQEN---------------IRLDE---------- 352

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +    LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +  +  +LL 
Sbjct: 353 -VAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLK 411

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 412 EMQRDGHVPSVVTYNVLMNG 431


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 150/322 (46%), Gaps = 35/322 (10%)

Query: 111 VLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           VL  +   A   + AMD L       G +P P+    ++  LC+SG + EA      +K+
Sbjct: 23  VLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKD 82

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVL 226
                 + T+N+                          LI   C  G++ E  ++L ++ 
Sbjct: 83  GACKPDVVTFNT--------------------------LIAGLCKAGRLDEAQQVLDEME 116

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             G       +N LI+      + GR  E +  M      PD  TY  +I+G CKS +  
Sbjct: 117 RSGFAANLVTYNTLINGL---SSAGRSGEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEID 173

Query: 287 EAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI-HKGLLPNEYTYNS 344
            AY    ++K+R G  PDT  Y+ +I+GLCK   L  A ++  EMI  K    +   +N+
Sbjct: 174 RAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVAFNT 233

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++ GYC+  +L+ A+ L   ML+ G     VTY+T+I GLC  G  D+ + L E+M  +G
Sbjct: 234 LVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRG 293

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
              DV+TY  L+ G CK GK+V
Sbjct: 294 CKPDVVTYTVLVTGLCKAGKMV 315



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 131/292 (44%), Gaps = 17/292 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L   L +A     A   LD    +GF+ N  +    I  L  +G   EA   
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFC 210
              ++ M      +T+N+ + G  K    D  +    ++ +             LI   C
Sbjct: 147 ---MQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 211 NDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
               + +  ELL++++          AFN L+  +C+ ++  R  ELL +M+    APD 
Sbjct: 204 KSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDV 263

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+GLC+     + + +   +  RG  PD V YT ++ GLCK G + +A ++   
Sbjct: 264 VTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKR 323

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           M+  G  PN  TY+ +  G C+ID L+ A  L   + DKG     V +  L+
Sbjct: 324 MLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           + YTY  ++  +C    L+ A  L +EM  + G   T   YN  +  LC  G+  EA  +
Sbjct: 17  DNYTYFVLVRAHCLAGELQAAMDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEV 76

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + M       DV+T+NTLI G CK G++
Sbjct: 77  VKNMKDGACKPDVVTFNTLIAGLCKAGRL 105


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/242 (34%), Positives = 133/242 (54%), Gaps = 9/242 (3%)

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           W+ Y ++++ GY         L+  FC  G V     +  ++   GL P   +FN LIS 
Sbjct: 211 WEFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISG 270

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C  KN      L   M +   +PD FTY  +INGLCK  +  EA  +F+++ E G VP+
Sbjct: 271 YCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPN 330

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V +TT+I G CK G +  A + +  M  +G+ P+  TYN++I+G CR  +L+EA++L  
Sbjct: 331 GVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLN 390

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM+  G+    +T+ TL+ G C  G  D A  + + M ++GI  D + +  LI G C++G
Sbjct: 391 EMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDG 450

Query: 424 KI 425
           ++
Sbjct: 451 RV 452



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/340 (25%), Positives = 158/340 (46%), Gaps = 15/340 (4%)

Query: 102 FSPDLVSCNVLFDSLVE-----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           FS  +  C+ L   +++        ++  ++ LD  G+ PN     + +   C+ G +  
Sbjct: 186 FSIPVCGCDYLLRRVMKLNQQPGHCWEFYLEVLD-YGYPPNVYLFNILMHGFCKIGDVMN 244

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQ 207
           A   F ++   G+  S+ ++N+ + G  +    +  +         ++  D+     LI 
Sbjct: 245 ARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALIN 304

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C + +V E   L  ++ E GLVP    F  LI   C+             M  R   P
Sbjct: 305 GLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRP 364

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +INGLC+     EA ++ N++   G+ PD + +TT++ G CK G +  A ++ 
Sbjct: 365 DLITYNALINGLCRDGDLKEARKLLNEMIGNGFKPDKITFTTLMDGCCKDGDMDSALEIK 424

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ +G+  ++  + ++I G CR   + +A+R+ K+ML  G+     TY  +I   C  
Sbjct: 425 DRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKK 484

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G       L +EM + G    V+TYN L+ G+CK+G++ N
Sbjct: 485 GDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKN 524



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 155/340 (45%), Gaps = 12/340 (3%)

Query: 100 YGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG+ P++   N+L   F  + +    ++  D +   G  P+  S    I   C S  +EE
Sbjct: 220 YGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEE 279

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F   S ++   +   + T+++ + G  K  R +    L+ ++ E G          LI 
Sbjct: 280 GFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLID 339

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK+         + + G+ P+   +N LI+  C   +     +LL+ M+     P
Sbjct: 340 GQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIGNGFKP 399

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  +++G CK      A  + + + E G   D V +T +I GLC+ G + DA +M 
Sbjct: 400 DKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERML 459

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  G  P++ TY  +I  +C+  +++   +L KEM   G     VTYN L+ G C  
Sbjct: 460 KDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQ 519

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           G+   A  L   M    +  + IT+N L+ G+CK G  V+
Sbjct: 520 GQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGSSVD 559


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 148/287 (51%), Gaps = 9/287 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           ESG + +A   +   +E  +     T    L   +K+    LVW  Y +++E GY     
Sbjct: 84  ESGFLRDAIECYRLTRENKLCVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLY 143

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+  FC DG +     +   + + GL P   ++N L++ +    +      L   M
Sbjct: 144 FFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAM 203

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +A    PD +TY  +INGLCK  K  +A ++F+++  +  VP+ V +TT+I G CK G +
Sbjct: 204 LASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRV 263

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG     +TY TL
Sbjct: 264 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTL 323

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           I G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 324 IDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  +L  ++L   LVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DDANKLFDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 175/341 (51%), Gaps = 16/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY-----IQCLCESGLIE 155
           G+ PD+ + ++L + L +A   + A +FL     + +  +   +     +  LC++  + 
Sbjct: 79  GYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLNSLCKAKKVH 138

Query: 156 EAFCAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-----IQAF 209
           +AF  FS +  E  V   + +++  + G  KID      KLY  +I+   +       AF
Sbjct: 139 QAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAF 198

Query: 210 CN----DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
            N     G++++   +  +++  G  P+   ++ LI  F   +   +  EL   M++R  
Sbjct: 199 LNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGC 258

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +++GLCK  K  EA+ +F  + ERG  PD V YTT+++G C +G +  A +
Sbjct: 259 RPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVE 318

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG  P+   YN ++ G+ R     EA++L + M+ +     TV++N +I GL 
Sbjct: 319 VFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLS 378

Query: 386 LHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
              R D+A  +FE M Q  G   D++TYN+LI G C E ++
Sbjct: 379 KAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRL 419



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 138/280 (49%), Gaps = 26/280 (9%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           LC+SG IE+AF A   ++E        +  +                          +IQ
Sbjct: 21  LCKSGKIEQAFEACRTMQESLSSSQPPSSGTC-----------------------HSVIQ 57

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNR 265
             C  G+V     LL  +++ G  P+    + LI+  C+        E L  M      R
Sbjct: 58  ELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTR 117

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
           A   F+Y  ++N LCK++K  +A+ +F+ +  ER  VPD V Y+ +I G CK+  LG A 
Sbjct: 118 ASSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAE 177

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++ +MI    +PN  TYN+ ++G  R   + +A+ +++EM+  G     +TY+TLI G 
Sbjct: 178 KLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGF 237

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            L  + D+A+ LFE M  +G   + +TYN L+ G CKE K
Sbjct: 238 SLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESK 277



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/201 (22%), Positives = 98/201 (48%), Gaps = 8/201 (3%)

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTM---VARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           N A+   +   C+     +  E   TM   ++ ++ P + T   VI  LCK+ +   A  
Sbjct: 11  NVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSALS 70

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL---LPNEYTYNSMIH 347
           +   + +RGY PD   ++ +I+ LCK   + +A++ + + +++ +     + ++YNS+++
Sbjct: 71  LLETMIKRGYCPDMATHSMLINELCKADKIQEAQE-FLQGMNRTISTRASSCFSYNSLLN 129

Query: 348 GYCRIDNLEEAKRLHKEML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
             C+   + +A  +   M+ ++      V+Y+ LI G C       A  L+++M      
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCV 189

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
            +V TYN  + G  ++G+I +
Sbjct: 190 PNVTTYNAFLNGLMRKGRIAD 210



 Score = 45.4 bits (106), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)

Query: 338 NEYTYNSMIHGYCRIDNLE---EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           N   + + + G C+   +E   EA R  +E L      ++ T +++I  LC  GR D A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L E M ++G   D+ T++ LI   CK  KI
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKI 100


>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
 gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
          Length = 728

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 172/358 (48%), Gaps = 19/358 (5%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFS 135
           +LK+  NV+        L S     PD  + NV+     +      AM     +++   S
Sbjct: 282 WLKEAANVI-------ELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLS 334

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    I    E G  EE F    +++  G+  +  T+N  +   +K  + D V K 
Sbjct: 335 PDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKT 394

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              + ESG          LI   C  GK+ E + L+ ++   GL  ++   N ++   C 
Sbjct: 395 VRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCR 454

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           ++      +LL +   R    D  +Y  +I G  K  K  +A R+++++KE+  +P  + 
Sbjct: 455 ERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIIT 514

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y ++I GLC+MG    A     E++  GL+P+E TYN++IHGYC+   +E+A + H +M+
Sbjct: 515 YNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMV 574

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +K +    VT NTL+ GLC  G  ++A  LF     KG   D ++YNT+I   CKE +
Sbjct: 575 EKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKR 632



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 161/338 (47%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  PD ++ N + D L +      A D L    + G  PN  +  + +   C  G ++E
Sbjct: 226 YGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKE 285

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQ 207
           A      + +  V     T+N  + G  K  R              KL  D++    LI 
Sbjct: 286 AANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLIN 345

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G   EG++L+ ++   G+ P +  +N ++  F +K     V + +  M      P
Sbjct: 346 GCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLP 405

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+  CK  K  EA+R+ +++  +G   D V   T++  LC+   L +A  + 
Sbjct: 406 DIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRALCRERKLDEAHDLL 465

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
                +G   +E +Y ++I GY + +   +A RL  EM +K    + +TYN++IAGLC  
Sbjct: 466 CSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIAGLCQM 525

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+T++A    +E+ + G+  D ITYNT+I GYC+EG++
Sbjct: 526 GKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQV 563



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  + N+L          K A   ++ +      P+  +  + I   C+ G I EA
Sbjct: 262 GLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEA 321

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++ + +   + T+N+ + GC +   ++  +KL  ++   G          +++ 
Sbjct: 322 MRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKW 381

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   GK+ E  + +R++ E G +P+   +N LIS  C+         L+  M  +    D
Sbjct: 382 FVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMD 441

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + T   ++  LC+ RK  EA+ +    + RGY  D V Y T+I G  K      A ++W 
Sbjct: 442 DVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWD 501

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K ++P+  TYNSMI G C++    +A     E+L+ G     +TYNT+I G C  G
Sbjct: 502 EMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEG 561

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + ++A+    +M +K    DV+T NTL+ G CKEG
Sbjct: 562 QVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEG 596



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 162/337 (48%), Gaps = 14/337 (4%)

Query: 102 FSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            SPD+V+ N L +   E       FK+ ++ ++  G  PN  +  + ++   + G ++E 
Sbjct: 333 LSPDVVTYNTLINGCFEHGSSEEGFKL-IEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEV 391

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K++E G    I T+N+ +    K+ + D  ++L  ++   G          +++A
Sbjct: 392 DKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAFRLMDEMGRKGLKMDDVTLNTMLRA 451

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C + K+ E ++LL      G   +  ++  LI  + + +   +   L   M  +   P 
Sbjct: 452 LCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPS 511

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I GLC+  K  +A    ++L E G VPD + Y T+IHG C+ G +  A +   
Sbjct: 512 IITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHN 571

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ K   P+  T N+++ G C+   LE+A +L    + KG     V+YNT+I  LC   
Sbjct: 572 KMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEK 631

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  EA+ L EEM +K +  D  TYN ++ G    G++
Sbjct: 632 RFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRM 668



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 150/331 (45%), Gaps = 32/331 (9%)

Query: 101 GFSPDLVSCNVLFDSLV------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  P L++CN L ++LV        R  K         G   N NS  + I   C     
Sbjct: 154 GMQPTLLTCNTLLNALVRFPSSHSIRLSKAVFTDFIKIGVKINTNSFNILIHGSCMENRF 213

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
            EA     K+++ G      T+N+ L G                           C  G+
Sbjct: 214 GEAIRVLGKMRDYGCPPDNITYNTILDG--------------------------LCKKGR 247

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           ++E  +LL  +   GL P  T FN L+   C        + ++  M   +  PD +TY  
Sbjct: 248 LNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKEAANVIELMSQNSVVPDAWTYNV 307

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G CK  +  EA R+  +++     PD V Y T+I+G  + G   +  K+  EM  +G
Sbjct: 308 MISGFCKQGRIAEAMRLREEMENLKLSPDVVTYNTLINGCFEHGSSEEGFKLIEEMEGRG 367

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + PN  TYN M+  + +   ++E  +  ++M + G     VTYNTLI+  C  G+ DEA+
Sbjct: 368 MKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCLPDIVTYNTLISWHCKVGKMDEAF 427

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L +EM +KG+  D +T NT+++  C+E K+
Sbjct: 428 RLMDEMGRKGLKMDDVTLNTMLRALCRERKL 458



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 140/289 (48%), Gaps = 33/289 (11%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---LVWKLY 196
           S+  Y+ C    G   +A   F+++K +G+  ++ T N+ L   ++   +    L   ++
Sbjct: 130 SIGAYVAC----GRPHQAAQIFNRMKRLGMQPTLLTCNTLLNALVRFPSSHSIRLSKAVF 185

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D I+ G  I                             +FN LI   C +  FG    +
Sbjct: 186 TDFIKIGVKINT--------------------------NSFNILIHGSCMENRFGEAIRV 219

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M      PDN TY  +++GLCK  +  EA  +  D+K +G  P+   +  ++ G C+
Sbjct: 220 LGKMRDYGCPPDNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCR 279

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +GWL +A  +   M    ++P+ +TYN MI G+C+   + EA RL +EM +       VT
Sbjct: 280 LGWLKEAANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEMENLKLSPDVVT 339

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           YNTLI G   HG ++E + L EEM  +G+  + +TYN +++ + K+GK+
Sbjct: 340 YNTLINGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKM 388



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 74/285 (25%), Positives = 134/285 (47%), Gaps = 14/285 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+V+ N L     +      AF++ MD +   G   +  +L   ++ LC    ++E
Sbjct: 402 GCLPDIVTYNTLISWHCKVGKMDEAFRL-MDEMGRKGLKMDDVTLNTMLRALCRERKLDE 460

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A       +  G F    ++ + ++G  K ++     +L+ ++ E            +I 
Sbjct: 461 AHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQALRLWDEMKEKEIIPSIITYNSMIA 520

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK ++  + L ++LE GLVP+   +N +I  +C++    +  +  + MV +N  P
Sbjct: 521 GLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHGYCQEGQVEKAFQFHNKMVEKNFKP 580

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T   ++ GLCK     +A ++FN    +G   D V Y T+I  LCK    G+A  + 
Sbjct: 581 DVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVDAVSYNTIILSLCKEKRFGEAFDLL 640

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            EM  K L P+ YTYN+++ G      +++A+    ++ +KG  E
Sbjct: 641 EEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFISKIAEKGKSE 685



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 116/252 (46%), Gaps = 12/252 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D V+ N +  +L   R    A D L S    G+  +  S    I    +     +A
Sbjct: 437 GLKMDDVTLNTMLRALCRERKLDEAHDLLCSARRRGYFVDEVSYGTLIIGYFKHEKASQA 496

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + ++KE  +  SI T+NS + G  ++ +T+       +L+ESG          +I  
Sbjct: 497 LRLWDEMKEKEIIPSIITYNSMIAGLCQMGKTNQAIDKLDELLESGLVPDEITYNTIIHG 556

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G+V + ++   +++E    P+    N L+   C++    +  +L +T +++ +  D
Sbjct: 557 YCQEGQVEKAFQFHNKMVEKNFKPDVVTCNTLLCGLCKEGMLEKALKLFNTWISKGKDVD 616

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I  LCK ++  EA+ +  +++E+   PD   Y  ++ GL   G + DA +   
Sbjct: 617 AVSYNTIILSLCKEKRFGEAFDLLEEMEEKKLGPDCYTYNAILGGLTDAGRMKDAEEFIS 676

Query: 329 EMIHKGLLPNEY 340
           ++  KG   N++
Sbjct: 677 KIAEKGKSENQF 688


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 109/376 (28%), Positives = 184/376 (48%), Gaps = 16/376 (4%)

Query: 63  SDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           S +P   + +P+   + L +Q+ +  ++ F +       F P +VS N L     +  + 
Sbjct: 229 SGVPQNEYTNPILI-DGLCRQSRLQDAVTFLRETGGE-EFGPSVVSFNALMSGFCKMGSV 286

Query: 123 KVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
            VA  F   +   G  P+  S  + +  LC +G +EEA    + ++  GV   I T+N  
Sbjct: 287 DVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNIL 346

Query: 180 -----LLGCI----KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230
                +LG I    K+ +  L+  L  DL+    LI   C  G + E ++L  ++L  GL
Sbjct: 347 ANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGL 406

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                 +  L+S  C+         LLH M      PD  TY  +I+GLCK     EA  
Sbjct: 407 KLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIE 466

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT-YNSMIHGY 349
           ++ ++  +   P++ + + +I GL + G + +A +M+F+ + K  +  E   YN MI GY
Sbjct: 467 LYEEMCSKRIYPNSFVCSAIISGLFEKGAISEA-QMYFDSVTKSDVAEEIILYNIMIDGY 525

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            ++ N+ EA R +K++++KG   T VT+N+LI G C  G+  EA  L + +   G+    
Sbjct: 526 AKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTS 585

Query: 410 ITYNTLIQGYCKEGKI 425
           +TY TL+ GYC+EG +
Sbjct: 586 VTYTTLMNGYCEEGDM 601



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 157/339 (46%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL++ +VL   L +  A + A++  +   S    PN       I  L E G I EA
Sbjct: 440 GLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEA 499

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  + +  V   I  +N  + G  K+       + Y  +IE G          LI  
Sbjct: 500 QMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYG 559

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK++E  +LL  +   GLVP +  +  L++ +CE+ +   + ++LH M A+   P 
Sbjct: 560 FCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPT 619

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  V+ GLCK  +  E+ ++   +  RG  PD + Y TVI   CK   L  A ++  
Sbjct: 620 QITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHN 679

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+   L P+  TYN +I+G C   NL++A RL   + D+    T V Y T+I   C  G
Sbjct: 680 QMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKG 739

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
               A   F +M ++G    +  Y+ +I   CK   I +
Sbjct: 740 DVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITD 778



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 145/282 (51%), Gaps = 12/282 (4%)

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
           ++ +A    +K+K + +  SI T+NS L     +  TD++W +Y+++  SG         
Sbjct: 183 MVHDALFVLAKMKVLNLQVSIATYNSLLY---NLRHTDIMWDVYNEIKASGVPQNEYTNP 239

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C   ++ +    LR+   +   P   +FN L+S FC+  +          M+  
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD ++Y  +++GLC +    EA    ND++  G  PD V Y  + +G   +G +  A
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGA 359

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K+   M+  GL P+  TY  +I G+C++ N+EE+ +L ++ML +G   + VTY  L++ 
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC  GR DEA  L  EM   G+  D++TY+ LI G CK G +
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAV 461



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 165/343 (48%), Gaps = 20/343 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G    +V+  VL  SL ++     A+  L   +  G  P+  +  + I  LC+ G +EEA
Sbjct: 405 GLKLSIVTYTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEA 464

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK-------------IDRTDLVWKLYHDLIESGY 204
              + ++    ++ +    ++ + G  +             + ++D+      ++I    
Sbjct: 465 IELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVA----EEIILYNI 520

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I  +   G + E     +Q++E G+ P    FN LI  FC+K       +LL T+    
Sbjct: 521 MIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHG 580

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P + TY  ++NG C+       + + ++++ +   P  + YT V+ GLCK G L ++ 
Sbjct: 581 LVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESV 640

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M  +GL P++ TYN++I  +C+  +L++A +LH +ML      + VTYN LI GL
Sbjct: 641 QLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGL 700

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C++G   +A  L   +  + I    + Y T+I+ +C +G + N
Sbjct: 701 CVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQN 743



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 93/250 (37%), Gaps = 12/250 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G  P  V+   L +   E        D L   ++    P   +  + ++ LC+ G + E
Sbjct: 579 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 638

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           +      +   G+F    T+N+ +    K       ++L++ +++            LI 
Sbjct: 639 SVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLIN 698

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + +   LL  + +  +     A+  +I   C K +        H MV R    
Sbjct: 699 GLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEV 758

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
               Y  VIN LCK     +A   F  +   G  PD  +   +++   + G      +++
Sbjct: 759 SIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIF 818

Query: 328 FEMIHKGLLP 337
             MI  GLLP
Sbjct: 819 AMMIKCGLLP 828


>gi|224135613|ref|XP_002322117.1| predicted protein [Populus trichocarpa]
 gi|222869113|gb|EEF06244.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 171/354 (48%), Gaps = 13/354 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPN 139
           +  V + +RF + L    GF  D+++CN +   +       VA D+ +     G  PN  
Sbjct: 250 KGEVEMGLRFHKAL-VQGGFGLDIITCNKILKGIWMQNDIGVADDYFNMVVRIGPKPNVV 308

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +    I   C+ G +++AF  F  +   GV   +  ++  + G  K  R +   +L    
Sbjct: 309 TFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLIVYSILIDGLFKAGRLEDGQRLLLVA 368

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           ++ G           + A+   G +    ++ +++L +G+ P   + + LI  FC+    
Sbjct: 369 LDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRMLNEGISPNVVSCSILIKGFCQNGRI 428

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                L   ++     P   TY  +I G CKS    + + ++ D+ ++   PDT++Y+ +
Sbjct: 429 LEACGLFVQILKLGFEPSILTYSALIAGFCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVL 488

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I+GLCK G +GDA + +F+ +++GL PN +T N+++  +CR+  +  A +++  M     
Sbjct: 489 INGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNI 548

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              TVTY  LI G    GR DEA  LF +M +K    DVITY TLI G CK  K
Sbjct: 549 KADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKK 602



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 169/404 (41%), Gaps = 82/404 (20%)

Query: 101 GFSPDLVSCNVLFDSLVEA-------RAFKVAMDF---LDSTGFS--------------- 135
           G +PDL+  ++L D L +A       R   VA+D    LD  GFS               
Sbjct: 337 GVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRV 396

Query: 136 -------------PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
                        PN  S  + I+  C++G I EA   F ++ ++G   SI T+++ + G
Sbjct: 397 IQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAG 456

Query: 183 CIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
             K       + LY D+I+            LI   C  G V +      Q +  GL P 
Sbjct: 457 FCKSGNLRDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPN 516

Query: 234 NTAFNKLISRFCEKK--------------------------------NFGRVSE---LLH 258
               N L+  FC  K                                 FGRV E   L  
Sbjct: 517 VFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFF 576

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ ++  PD  TY  +I+GLCK +K      +F+ + +    PD  +Y  +I+   + G
Sbjct: 577 QMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREG 636

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L  A  ++  ++ +G  P+ +T+N+MI  YC    L++A +L  +M  +      +T+ 
Sbjct: 637 HLEAALGLFVHVVERGPKPDVFTFNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFT 696

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            LI   C  GR D+A  +F +M ++G   +++TY+ LI GY K 
Sbjct: 697 ILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTYSCLIHGYFKS 740



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 149/335 (44%), Gaps = 13/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD +  +VL + L +      A+ F       G SPN  +L   +   C    I  A   
Sbjct: 480 PDTIVYSVLINGLCKQGLVGDALRFFFQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKV 539

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           +  +  + +     T+   + G  +  R D    L+  +++  +         LI   C 
Sbjct: 540 YYLMGMLNIKADTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCK 599

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K S G  +   + ++ + P+   +N LI+    + +      L   +V R   PD FT
Sbjct: 600 LKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFT 659

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I   C  ++  +A ++F  +      P+ + +T +I   C+ G + DA  M+ +M+
Sbjct: 660 FNTMICCYCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKML 719

Query: 332 HKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
            +G  PN  TY+ +IHGY +  + +E   +L+ EML+       V+Y+ LI GLC  G  
Sbjct: 720 EEGPEPNLVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLM 779

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA   F     K +  DVI Y  LI+GYCK G++
Sbjct: 780 KEASCAFRCALDKHLLPDVIAYTILIRGYCKVGRL 814



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/367 (22%), Positives = 162/367 (44%), Gaps = 30/367 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS--TGFSPNPNSLELY-- 144
           +IRFF+W  S +       S   L   L++ + F  A    D     F  + ++L+ +  
Sbjct: 97  AIRFFEWAESFFISPLSAPSFCALLHVLLQNQLFSRAACVFDKFIMQFGNDYDTLDAFRD 156

Query: 145 -----------------IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
                            I+  C  G+ +++   F  +   G+F S       L   I   
Sbjct: 157 GFCDLDSTNHSVVYGFLIESYCRKGMFDKSVDIFMHVCVKGIFVSPNVVYLLLGSLIDSH 216

Query: 188 RTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             +++   Y +L  +          +++  F N G+V  G    + +++ G   +    N
Sbjct: 217 CVEVIVDKYGELCSAMREQPFSVYEFVMNRFMNKGEVEMGLRFHKALVQGGFGLDIITCN 276

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           K++     + + G   +  + +V     P+  T+  +I+  CK     +A+ +F+ +   
Sbjct: 277 KILKGIWMQNDIGVADDYFNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGN 336

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  PD ++Y+ +I GL K G L D +++    + KG+  +   ++S +  Y +I +L   
Sbjct: 337 GVTPDLIVYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRV 396

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +++K ML++G     V+ + LI G C +GR  EA  LF ++ + G    ++TY+ LI G
Sbjct: 397 IQIYKRMLNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAG 456

Query: 419 YCKEGKI 425
           +CK G +
Sbjct: 457 FCKSGNL 463



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 111/215 (51%), Gaps = 2/215 (0%)

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           ND  V++ Y     V+  G  P    F+ LI  +C++ N  +   L   M      PD  
Sbjct: 286 NDIGVADDY--FNMVVRIGPKPNVVTFSTLIDAYCKEGNLDKAFVLFDVMAGNGVTPDLI 343

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  +I+GL K+ +  +  R+     ++G   D V +++ +    K+G LG   +++  M
Sbjct: 344 VYSILIDGLFKAGRLEDGQRLLLVALDKGIKLDVVGFSSAMDAYVKIGDLGRVIQIYKRM 403

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +++G+ PN  + + +I G+C+   + EA  L  ++L  G+  + +TY+ LIAG C  G  
Sbjct: 404 LNEGISPNVVSCSILIKGFCQNGRILEACGLFVQILKLGFEPSILTYSALIAGFCKSGNL 463

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + ++L+E+M +K    D I Y+ LI G CK+G +
Sbjct: 464 RDGFYLYEDMIKKRCEPDTIVYSVLINGLCKQGLV 498



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 147/334 (44%), Gaps = 14/334 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSP 136
           L +Q  V  ++RFF +   + G SP++ + N L DS    +    AM     +       
Sbjct: 492 LCKQGLVGDALRFF-FQAVNRGLSPNVFTLNTLLDSFCRLKCIVGAMKVYYLMGMLNIKA 550

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT------- 189
           +  +  + I+   + G ++EA   F ++ +      + T+ + + G  K+ ++       
Sbjct: 551 DTVTYTILIKGAAQFGRVDEALMLFFQMLKKDFKPDVITYCTLIDGLCKLKKSSAGLCIF 610

Query: 190 DLVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
           D + K  +  D+     LI     +G +     L   V+E G  P+   FN +I  +C  
Sbjct: 611 DFMCKNAVAPDIAIYNVLINMHSREGHLEAALGLFVHVVERGPKPDVFTFNTMICCYCNF 670

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           K      +L   M +    P+  T+  +I+  C+  +  +A  +F+ + E G  P+ V Y
Sbjct: 671 KRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPNLVTY 730

Query: 308 TTVIHGLCK-MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           + +IHG  K    +    K++ EM+   + PN  +Y+ +I G C+   ++EA    +  L
Sbjct: 731 SCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAFRCAL 790

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           DK      + Y  LI G C  GR  EA  L++ M
Sbjct: 791 DKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNM 824



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 119/279 (42%), Gaps = 32/279 (11%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCL 148
           FFQ L     F PD+++   L D L + +     +   DF+     +P+     + I   
Sbjct: 575 FFQMLKKD--FKPDVITYCTLIDGLCKLKKSSAGLCIFDFMCKNAVAPDIAIYNVLINMH 632

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
              G +E A   F  + E G    + T+N+                          +I  
Sbjct: 633 SREGHLEAALGLFVHVVERGPKPDVFTFNT--------------------------MICC 666

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN  ++ +  +L  ++  + L P    F  LI  FC +        +   M+     P+
Sbjct: 667 YCNFKRLDDAVQLFAKMTSEQLRPNAITFTILIDAFCREGRMDDAMLMFSKMLEEGPEPN 726

Query: 269 NFTYEEVINGLCKSRKRLEA-YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             TY  +I+G  KS+  +E+  +++N++ E    P+ V Y+ +I GLCK G + +A   +
Sbjct: 727 LVTYSCLIHGYFKSQSMMESGLKLYNEMLENNIAPNIVSYSILIDGLCKRGLMKEASCAF 786

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
              + K LLP+   Y  +I GYC++  L EA  L+  ML
Sbjct: 787 RCALDKHLLPDVIAYTILIRGYCKVGRLTEAMMLYDNML 825


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 60  IAAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 119

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFX 179

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 180 LKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 299

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 300 TYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVD 351



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 90  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 149

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I+    D  + L   ++ SG          LI   C + K+
Sbjct: 150 TKWGLRPSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKM 209

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 210 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 269

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I+G CK G L  A +    MI + +
Sbjct: 270 IYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENI 329

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +E  Y ++I G C+     +A+++ +EML  G      TY  +I   C  G       
Sbjct: 330 RLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSK 389

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 390 LLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 81/200 (40%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D     G  P+ 
Sbjct: 240 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK 298

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +                 I++D           
Sbjct: 299 ITYTTLINGCCKEGDLDSAFEHRKRMIQEN---------------IRLDE---------- 333

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +    LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+  +    S+LL 
Sbjct: 334 -VAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLK 392

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 393 EMQRDGHVPSVVTYNVLMNG 412


>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 889

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 177/377 (46%), Gaps = 53/377 (14%)

Query: 101 GFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +P +V+ N + ++      +VEAR      D L   GFSPN       +    +   I
Sbjct: 331 GCNPTVVTFNTVINAFCKEGNVVEARKL---FDGLKEMGFSPNAIMYNTLMNGYVKMREI 387

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------- 205
           ++A   + ++++ G+     T+N  + G  K  R +   +L  D+   G L         
Sbjct: 388 DQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDIS 447

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC----EKKNF----------- 250
           +   C  G++ E  E L  +LE GL P   AFN +I+ +     E K F           
Sbjct: 448 VSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGL 507

Query: 251 -----------------GRV---SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                            GR+   +EL+  M+ +  + +N  +  +++   K    + A  
Sbjct: 508 TPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQS 567

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           ++ +++ RG  PD V ++  I GL K G + +A  ++ EM+ KGL+PN + YNS+I G+C
Sbjct: 568 LWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFC 627

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   L EA +L K M  +G      T N +I GLC  GR   A ++F +M Q G+  D+I
Sbjct: 628 KCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDII 687

Query: 411 TYNTLIQGYCKEGKIVN 427
           TYNTLI GYCK   +VN
Sbjct: 688 TYNTLINGYCKAFDMVN 704



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +PD ++ N+L         E    ++  D +   G  P+ +  ++ +  LC +G ++E
Sbjct: 401 GIAPDGITFNILVSGHYKYGREEDGDRLLKD-ISVLGLLPDRSLFDISVSGLCWAGRLDE 459

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A      + E G+  SI  +NS +    +    D  ++ Y  ++  G          L+ 
Sbjct: 460 AMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLM 519

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               +G++ E  EL+ Q++E GL   N AF  L+ +F ++ +      L   M  R   P
Sbjct: 520 GLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFP 579

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   +   I+GL K     EAY VF ++  +G +P+   Y ++I G CK G L +A K+ 
Sbjct: 580 DVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLE 639

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M H+GLLP+ +T N +I G C+   +  A  +  +M   G     +TYNTLI G C  
Sbjct: 640 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKA 699

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                A +L   M   G   D+ TYN  I G+C   ++
Sbjct: 700 FDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRM 737



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 19/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP +++ N +  +  +A    +AF+ A   +   G +P+P++    +  L  +G ++E
Sbjct: 471 GLSPSIIAFNSVIAAYSQAGLEDKAFE-AYKLMVHFGLTPSPSTCSSLLMGLSINGRLQE 529

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV-----WK------LYHDLIESGYL 205
           A     ++ E G+  S+      +L      R D+V     W       ++ D++     
Sbjct: 530 ATELIGQMIEKGL--SVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAF 587

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I      G V E Y +  ++L  GL+P N A+N LI  FC+        +L   M  R  
Sbjct: 588 IDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGL 647

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FT   +I GLCK  +   A  VF D+ + G  PD + Y T+I+G CK   + +A  
Sbjct: 648 LPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADN 707

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M   G  P+  TYN  IHG+C    +  A  +  E++  G    TVTYN+++ G+C
Sbjct: 708 LVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGIVPNTVTYNSMLNGVC 767

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                D A  L   + +     +V+T N L+  + K+G
Sbjct: 768 -SDILDRAMILTARLLKMAFVPNVVTANLLLSQFYKQG 804



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 138/280 (49%), Gaps = 15/280 (5%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A     +++E+GV  S           +++     VWKL+ D+I  G          +I
Sbjct: 214 QALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGII 273

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVAR 263
             FC  G +  G  LL  + +    P   A+N +I+  C +   GR S+ L   + M+ R
Sbjct: 274 LGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIR---GRTSDALAWFNLMIER 330

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P   T+  VIN  CK    +EA ++F+ LKE G+ P+ +MY T+++G  KM  +  A
Sbjct: 331 GCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQA 390

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ EM  KG+ P+  T+N ++ G+ +    E+  RL K++   G       ++  ++G
Sbjct: 391 NMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSG 450

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           LC  GR DEA     +M +KG+   +I +N++I  Y + G
Sbjct: 451 LCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAG 490



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 109/213 (51%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G     ++L + V+  G  P    F+ +I  FC K        LLH M   +  P+ F Y
Sbjct: 245 GDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAY 304

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             VIN  C   +  +A   FN + ERG  P  V + TVI+  CK G + +ARK++  +  
Sbjct: 305 NIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKE 364

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G  PN   YN++++GY ++  +++A  L++EM  KG     +T+N L++G   +GR ++
Sbjct: 365 MGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREED 424

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              L ++++  G+  D   ++  + G C  G++
Sbjct: 425 GDRLLKDISVLGLLPDRSLFDISVSGLCWAGRL 457



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 26/291 (8%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I   C  G   +A   F+ + E G   ++ T+N+                 
Sbjct: 299 PNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNT----------------- 341

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    +I AFC +G V E  +L   + E G  P    +N L++ + + +   + + 
Sbjct: 342 ---------VINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANM 392

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M  +  APD  T+  +++G  K  +  +  R+  D+   G +PD  ++   + GLC
Sbjct: 393 LYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLC 452

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G L +A +   +M+ KGL P+   +NS+I  Y +    ++A   +K M+  G   +  
Sbjct: 453 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 512

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           T ++L+ GL ++GR  EA  L  +M +KG+  + + +  L+  + K G +V
Sbjct: 513 TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVV 563



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 9/256 (3%)

Query: 176 WNSALLGCIKI-DRTDLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDG 229
           W  A +G ++  D  + +W+ +H + ES +     L++AF N     +  E+L ++ E G
Sbjct: 168 WVIARIGVLRSGDLVEFMWRGHH-VYESDFSVLDSLMRAFVNAEMGFQALEILGRMREVG 226

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           + P  +    L        ++G V +L   ++ R   P  +T+  +I G C+        
Sbjct: 227 VRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGE 286

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE-MIHKGLLPNEYTYNSMIHG 348
            + + + +    P+   Y  VI+  C  G   DA   WF  MI +G  P   T+N++I+ 
Sbjct: 287 SLLHLMPKFHCEPNAFAYNIVINACCIRGRTSDALA-WFNLMIERGCNPTVVTFNTVINA 345

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C+  N+ EA++L   + + G+    + YNTL+ G       D+A  L+EEM +KGI  D
Sbjct: 346 FCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPD 405

Query: 409 VITYNTLIQGYCKEGK 424
            IT+N L+ G+ K G+
Sbjct: 406 GITFNILVSGHYKYGR 421



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 74/154 (48%)

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
           + ++     +    +A  +   ++E G  P       +   L ++G  G+  K++ ++I 
Sbjct: 200 DSLMRAFVNAEMGFQALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIR 259

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +G  P +YT++ +I G+CR   +   + L   M           YN +I   C+ GRT +
Sbjct: 260 RGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIRGRTSD 319

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           A   F  M ++G    V+T+NT+I  +CKEG +V
Sbjct: 320 ALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVV 353


>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 775

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 158/310 (50%), Gaps = 8/310 (2%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           R+  V ++ +  +G  PN  +  + I   C++G IE+AF  +S++K  G+  S+ + NS 
Sbjct: 280 RSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSI 339

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
           L G +K       + +++D +ESG         L+   C +GK++E   L  +V+  G+ 
Sbjct: 340 LEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGIS 399

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P   ++N +I   C K N     ++   M+     P+  T+  +++G  K      A+ +
Sbjct: 400 PNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSI 459

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F+ +K+   +P       +I GLCK G   + R ++ + + +G +P    YN++I G+ +
Sbjct: 460 FHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIK 519

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             N+  A  +++EM + G   +TVTY +LI G C     D A  L  +M +KG+  D+  
Sbjct: 520 EGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKA 579

Query: 412 YNTLIQGYCK 421
           Y TLI G+CK
Sbjct: 580 YGTLIDGFCK 589



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 153/333 (45%), Gaps = 35/333 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEAR------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G SP++VS N +   L   R      A KV  + LD+ GF+PN  +  + +    + G I
Sbjct: 397 GISPNVVSYNNII--LGHCRKDNINAACKVYKEMLDN-GFTPNAVTFTILMDGYFKKGDI 453

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           E AF  F ++K+  +  +  T                           G +I+  C  G+
Sbjct: 454 ENAFSIFHRMKDANILPTDTTL--------------------------GIIIKGLCKAGR 487

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
             EG +L  + +  G VP    +N +I  F ++ N    S +   M      P   TY  
Sbjct: 488 SFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTS 547

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G CK      A ++ ND+K +G   D   Y T+I G CK   +  A ++  E+   G
Sbjct: 548 LIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG 607

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L PN + YNSMI G+  ++N+EEA  L+K+M+++G      TY +LI GL   GR   A 
Sbjct: 608 LSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYAS 667

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +  EM  KGI  D   +  LI G C +G+  N
Sbjct: 668 DIHTEMLSKGILPDDRAHTVLINGLCNKGQFEN 700



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 12/330 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P+ V+  +L D   +    + A      +      P   +L + I+ LC++G   E 
Sbjct: 432 GFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEG 491

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+K    G   +   +N+ + G IK    +L   +Y ++ E G          LI  
Sbjct: 492 RDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDG 551

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +    +LL  +   GL  +  A+  LI  FC++++     ELL+ +     +P+
Sbjct: 552 FCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPN 611

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F Y  +I G        EA  ++  +   G   D   YT++I GL K G L  A  +  
Sbjct: 612 RFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHT 671

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG+LP++  +  +I+G C     E A+++ ++M  K    + + YNTLIAG    G
Sbjct: 672 EMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEG 731

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
              EA+ L +EM  +G+  D ITY+ L+ G
Sbjct: 732 NLQEAFRLHDEMLDRGLVPDNITYDILVNG 761



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 155/336 (46%), Gaps = 21/336 (6%)

Query: 106 LVSCNVLFD---SLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           LV C  L++    + E    +    FL +   G   +  +  +++  LC   L   +  A
Sbjct: 156 LVECTKLYNFPLDIQEGNILEAEQHFLQAKARGVELDQEAYSIFVHLLC---LKPNSGYA 212

Query: 161 FSKLKEMGVFGSIK---TWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
            S L+EM   G I    T+ S +  C+K        +L  D++  G          L++ 
Sbjct: 213 LSLLREMRAAGWIPPEGTFTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKG 272

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G +     L+ ++ E GLVP    ++ LI   C+  N  +  E    M  +     
Sbjct: 273 YCMQGNLRSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSS 332

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            ++   ++ G  K +    A+ +FND  E G + +   + T++  LCK G + +A  +W 
Sbjct: 333 VYSLNSILEGYLKCQSWQNAFTMFNDALESG-LANVFTFNTLLSWLCKEGKMNEACNLWD 391

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+I KG+ PN  +YN++I G+CR DN+  A +++KEMLD G+    VT+  L+ G    G
Sbjct: 392 EVIAKGISPNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKG 451

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             + A+ +F  M    I     T   +I+G CK G+
Sbjct: 452 DIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGR 487



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 34/248 (13%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G + E  +   Q    G+  +  A++  +   C K N G    LL  M A    P   T
Sbjct: 171 EGNILEAEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGT 230

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  VI    K     EA R+ +D+   G   +  + T+++ G C  G L  A  +  E+ 
Sbjct: 231 FTSVITACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEIS 290

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-----YGETTV----------- 375
             GL+PN+ TY+ +I G C+  N+E+A   + EM  KG     Y   ++           
Sbjct: 291 ESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQ 350

Query: 376 ------------------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
                             T+NTL++ LC  G+ +EA +L++E+  KGI  +V++YN +I 
Sbjct: 351 NAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIIL 410

Query: 418 GYCKEGKI 425
           G+C++  I
Sbjct: 411 GHCRKDNI 418


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 168/335 (50%), Gaps = 14/335 (4%)

Query: 104 PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P++VS  ++ +         +A+ + ++ +D  G  PN  +    I  LC++ +++ A  
Sbjct: 201 PNVVSYAIVINGFFTEGQVDKAYNLFLEMMDR-GIQPNVVTYTTVIDGLCKAQVVDRAEG 259

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F ++ + GV     T+N  + G + I +   V ++  ++   G          L+   C
Sbjct: 260 VFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC 319

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           N+G+  E   L   ++  G+ P    +  LI  +  K     + +LL+ MV    +PD+ 
Sbjct: 320 NNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHH 379

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            +  +     K     EA  +FN +K++G  PD V Y  +I  LCK+G + DA   + +M
Sbjct: 380 IFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQM 439

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +++G+ PN + +NS+++G C +D  E+AK  + EML++G     V +NT++  LC  G+ 
Sbjct: 440 MNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQV 499

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +A  L + M + G    VI+Y TLI G+C  G+I
Sbjct: 500 MKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRI 534



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD    N++F +  +      AM   +     G SP+  +    I  LC+ G +++A
Sbjct: 373 GLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDA 432

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++   GV  +I  +NS + G   +D+ +   + Y +++  G          ++  
Sbjct: 433 VLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCN 492

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V +   L+  +   G  P   ++  LI   C        ++ L  M++    PD
Sbjct: 493 LCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPD 552

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++G C++ +  +AY VF ++   G  P  V Y+T++HGL       +A++++ 
Sbjct: 553 EWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYL 612

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  G   N + YN +++G  + + ++EA +L + +  K +     T+N +I  L   G
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSG 672

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R ++A HLF  ++  G+  DV TY  + +   +EG
Sbjct: 673 RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEG 707



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 145/324 (44%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++    +L        A     D L+     G SP+ +   +      +  +I+EA
Sbjct: 338 GIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEA 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F+K+K+ G                          L  D++  G LI A C  G+V +
Sbjct: 398 MHIFNKMKQQG--------------------------LSPDVVNYGALIDALCKLGRVDD 431

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                 Q++ +G+ P    FN L+   C    + +  E    M+ +   PD   +  ++ 
Sbjct: 432 AVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILC 491

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LC   + ++A R+ + ++  G  P  + YTT+I G C +G + +A K    M+  GL P
Sbjct: 492 NLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKP 551

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +E+TYN+++HGYCR   +++A  + +EML  G     VTY+T++ GL    R  EA  L+
Sbjct: 552 DEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELY 611

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
             M   G   ++  YN ++ G  K
Sbjct: 612 LNMITSGKQWNIWIYNIILNGLSK 635



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 139/339 (41%), Gaps = 48/339 (14%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFS-------------------------------- 162
           +P+P +  + I C C  G +E  F  F                                 
Sbjct: 91  TPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLCEAMD 150

Query: 163 ----KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------------GYLI 206
               ++ E+G    + ++N+ L G     R +   +L H + +S              +I
Sbjct: 151 ILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVI 210

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             F  +G+V + Y L  ++++ G+ P    +  +I   C+ +   R   +   M+ +   
Sbjct: 211 NGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK 270

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PDN TY  +I+G     K  E  R+  ++   G  PD   Y ++++ LC  G   +AR +
Sbjct: 271 PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFL 330

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  MI KG+ PN   Y  +IHGY     L E   L   M++ G       +N +      
Sbjct: 331 FDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAK 390

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               DEA H+F +M Q+G+  DV+ Y  LI   CK G++
Sbjct: 391 KAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRV 429



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 161/344 (46%), Gaps = 21/344 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPN--SLELYIQCLCESGLI 154
           G +PD+VS N L       +  + A++ L    DS G S  PN  S  + I      G +
Sbjct: 160 GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAIVINGFFTEGQV 219

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++A+  F ++ + G+  ++ T+ + + G  K    D    ++  +I+ G          L
Sbjct: 220 DKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVA 262
           I  + + GK  E   +L ++   GL P+   +  L++  C   N GR  E   L  +M+ 
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC---NNGRCREARFLFDSMIR 336

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   P+   Y  +I+G        E + + N + E G  PD  ++  +     K   + +
Sbjct: 337 KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDE 396

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++ +M  +GL P+   Y ++I   C++  +++A     +M+++G       +N+L+ 
Sbjct: 397 AMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVY 456

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           GLC   + ++A   + EM  +GI  DV+ +NT++   C +G+++
Sbjct: 457 GLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVM 500



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/340 (20%), Positives = 138/340 (40%), Gaps = 14/340 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQ 146
           ++F Q ++   G +P++   N L   L     ++ A +F   + + G  P+       + 
Sbjct: 434 LKFNQMMNE--GVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILC 491

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC  G + +A      ++ +G    + ++ + + G   + R D   K    ++  G   
Sbjct: 492 NLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKP 551

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  L+  +C  G++ + Y + R++L +G+ P    ++ ++      + F    EL 
Sbjct: 552 DEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELY 611

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+   +  + + Y  ++NGL K+    EA+++F  L  + +  +   +  +I  L K 
Sbjct: 612 LNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKS 671

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA  ++  +   GL+P+ +TY  +         LEE   L   M   G    +   
Sbjct: 672 GRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRML 731

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           N L+  L   G    A     ++ +K    +  T   LI 
Sbjct: 732 NALVRRLLHRGDITRAGAYLCKLDEKNFSLEASTTAMLIS 771


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 173/337 (51%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+    N++F +  +    + AM   +     G SP+  S    I  LC+ G +++A
Sbjct: 331 GVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDA 390

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA--------- 208
              F+++   GV  +I  ++S + G   + + +   +L+ ++++ G  + A         
Sbjct: 391 VLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCN 450

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN+G+V E   L+  ++  G+ P   ++N L++  C        ++LL  MV+    P+
Sbjct: 451 LCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPN 510

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  ++ G CK+R+  +AY +F ++  +G  P    Y T++HGL + G   +A +++ 
Sbjct: 511 EFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYL 570

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI+     + YTYN +++G C+ + ++EA ++ + +  K     +VT+N +I  L   G
Sbjct: 571 NMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGG 630

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  LF  ++  G+  DV+TY  + +   +EG +
Sbjct: 631 RKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSL 667



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 165/341 (48%), Gaps = 14/341 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S +G  PD+V+ N + +         +A+ + ++ +D  G  PN  +    I  LC++ +
Sbjct: 153 SEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQ-GIPPNVVTYTTVIDGLCKAQV 211

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           ++ A   F ++ + GV     T+N  + G +   +   V ++           D I    
Sbjct: 212 VDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCITYAL 271

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +G+  E       +   G+ P+   +  L+  +  K     +   L  MV   
Sbjct: 272 LLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLMVGNG 331

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P+   +  +     K     EA  +FN ++++G  PD V +  +I  LCK+G + DA 
Sbjct: 332 VSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALCKLGRVDDAV 391

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             + +MI++G+ PN + ++S+++G C +   E+A+ L  E+LD+G     V +NTL+  L
Sbjct: 392 LQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDAVFFNTLMCNL 451

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR  EA  L + M + G+  +VI+YNTL+ G+C  G+I
Sbjct: 452 CNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRI 492



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 10/305 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S+  +PN  +  + I C C  G +E  F AF  + + G   ++   +  L G     R D
Sbjct: 83  SSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVD 142

Query: 191 -----LVWKLYH-----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                L+ ++       D++    +I  F  +G+V + Y L  ++++ G+ P    +  +
Sbjct: 143 EATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTV 202

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I   C+ +   R   +   M+ R   PDN TY  +I+G   + K  E  ++  ++   G 
Sbjct: 203 IDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGL 262

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD + Y  ++  LCK G   +AR  +  M  KG+ P+   Y  ++HGY     L E   
Sbjct: 263 EPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHS 322

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
               M+  G       +N +          +EA H+F +M Q+G+  DV+++  LI   C
Sbjct: 323 FLDLMVGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQGLSPDVVSFGALIDALC 382

Query: 421 KEGKI 425
           K G++
Sbjct: 383 KLGRV 387



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/368 (22%), Positives = 146/368 (39%), Gaps = 47/368 (12%)

Query: 101 GFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPN-----------------PNS 140
           G SPD+VS   L D+L +  R     + F  + + G +PN                   +
Sbjct: 366 GLSPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKA 425

Query: 141 LELYIQCL------------------CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
            EL+ + L                  C  G + EA      +  +GV  ++ ++N+ + G
Sbjct: 426 EELFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAG 485

Query: 183 CIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                R D   KL   ++ +G          L++ +C   +V + Y L R++L  G+ P 
Sbjct: 486 HCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPV 545

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N ++    +   F   +EL   M+      D +TY  ++NGLCK+    EA+++F 
Sbjct: 546 VATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFR 605

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            L  +    D+V +  +I  L K G   DA  ++  +   GL+P+  TY  +        
Sbjct: 606 RLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEG 665

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +L E   L   M   G    +   N L+  L   G    A     ++ +K    +  T +
Sbjct: 666 SLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTS 725

Query: 414 TLIQGYCK 421
            LI  Y +
Sbjct: 726 MLISLYSR 733



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 67/326 (20%), Positives = 129/326 (39%), Gaps = 51/326 (15%)

Query: 72  DPLFFREF---LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDS-LVEARAFKVA-- 125
           D +FF      L  +  V+ + R    L    G  P+++S N L     +  R  + A  
Sbjct: 440 DAVFFNTLMCNLCNEGRVMEAQRLID-LMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKL 498

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D + S G  PN  +  + ++  C++  +++A+  F ++   GV   + T+N+ L G  +
Sbjct: 499 LDVMVSNGLKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQ 558

Query: 186 IDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R     +LY ++I S           ++   C +  V E +++ R             
Sbjct: 559 TGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAFKMFR------------- 605

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
                 R C K                +   D+ T+  +I  L K  ++ +A  +F  + 
Sbjct: 606 ------RLCSK----------------DPQLDSVTFNIMIGALLKGGRKEDAMDLFATIS 643

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G VPD V Y  +   L + G LG+   ++  M   G  PN +  N+++       ++ 
Sbjct: 644 AYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDIS 703

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIA 382
            A     ++ +K +     T + LI+
Sbjct: 704 RAGVYLYKLDEKNFSLEASTTSMLIS 729


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 137/251 (54%), Gaps = 12/251 (4%)

Query: 184 IKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           ++I+R+   W LY ++++SGY         L+  FC  G V     +  ++ + GL P  
Sbjct: 227 VEIERS---WALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTV 283

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            +FN LIS  C+  +      L   M +    PD FT+  +INGLCK  +  E   +F++
Sbjct: 284 VSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDE 343

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +  RG VP+ V +TT+I G CK G +  A K +  M+ +G+ P+  TYN++I+G C++ +
Sbjct: 344 MCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGD 403

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L+EA+RL  EM   G     +T+ TLI G C  G  + A  +   M ++GI  D + +  
Sbjct: 404 LKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTA 463

Query: 415 LIQGYCKEGKI 425
           LI G C+EG++
Sbjct: 464 LISGLCREGRV 474



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 167/369 (45%), Gaps = 35/369 (9%)

Query: 93  FQWLHSHY---GFSPDLV----------------SCNVLFDSLVEARAFKVA------MD 127
           F  L S Y   GF+PD V                 C  L   +V  R  ++       ++
Sbjct: 179 FDALISAYVDSGFTPDAVQCFRLVTKNKFPVPIRGCENLLRRVVRLRPVEIERSWALYLE 238

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            LDS G+ P      + +   C++G +  A   F ++ + G+  ++ ++N+ + GC K  
Sbjct: 239 VLDS-GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSG 297

Query: 188 RTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             +  ++L           D+     LI   C +G++ EG  L  ++   GLVP    F 
Sbjct: 298 DVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFT 357

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI   C+        +    M+A+   PD  TY  +INGLCK     EA R+ N++   
Sbjct: 358 TLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTAS 417

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  PD + +TT+I G CK G +  A ++   M+ +G+  ++  + ++I G CR   + +A
Sbjct: 418 GLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDA 477

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            R+  +ML  G+     TY  +I   C  G     + L +EM   G    V+TYN L+ G
Sbjct: 478 GRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNG 537

Query: 419 YCKEGKIVN 427
            CK+G++ N
Sbjct: 538 LCKQGQMKN 546



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 156/339 (46%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P +   NVL     +A      ++  D +   G  P   S    I   C+SG +EE 
Sbjct: 243 GYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEG 302

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     ++  GV   + T+++ + G  K  R D    L+ ++   G          LI  
Sbjct: 303 FRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDG 362

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GKV    +  + +L  G+ P+   +N LI+  C+  +      L++ M A    PD
Sbjct: 363 QCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMTASGLKPD 422

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+G CK      A  +   + E G   D V +T +I GLC+ G + DA +M  
Sbjct: 423 KITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDAGRMLT 482

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G  P++ TY  +I  +C+  +++   +L KEM   G+    VTYN L+ GLC  G
Sbjct: 483 DMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQG 542

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +   A  L + M   G+  + ITYN L+ G+ K G  V+
Sbjct: 543 QMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGSSVD 581


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 165/336 (49%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ + +  +L + +A   AM+ L +    G  PN  +    +   C S   +EA 
Sbjct: 227 ISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAI 286

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               K++  GV   + T+NS +    K  R+    K++  + + G          L+Q +
Sbjct: 287 GFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGY 346

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G + E + LL  ++ +G+ P++  FN LI  + +++       +   M      P+ 
Sbjct: 347 ATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNV 406

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VI  LCKS    +A   F  + + G  P+ ++YT++IH LC       A ++  E
Sbjct: 407 VTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ +G+  N   +NS+IH +C+   + E+++L   M+  G     +TY+TLI G CL G+
Sbjct: 467 MLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK 526

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEA  L   M   G+  D +TYNTLI GYC+  ++
Sbjct: 527 MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRM 562



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 20/341 (5%)

Query: 101 GFSPDLVS----CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +PD+VS     N  F      +A+    + LD    SP+  +    I  LC+   +++
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRR-ISPDVVTYSSIIAALCKGQAMDK 249

Query: 157 AFCAFSKLKEMGVFGSIKTWNSAL------------LGCIKIDRTDLVWKLYHDLIESGY 204
           A    + + + GV  +  T+NS L            +G +K  R+D V     D++    
Sbjct: 250 AMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEP---DVVTYNS 306

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +G+ +E  ++   + + GL P+   +  L+  +  K     +  LL  MV   
Sbjct: 307 LMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG 366

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+  +  +I    K  K  EA  VF+ +++ G  P+ V Y  VI  LCK G + DA 
Sbjct: 367 IHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAM 426

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             + +MI +GL PN   Y S+IH  C  D  ++A+ L  EMLD+G    T+ +N++I   
Sbjct: 427 LYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSH 486

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR  E+  LF+ M + G+  +VITY+TLI GYC  GK+
Sbjct: 487 CKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 147/272 (54%), Gaps = 15/272 (5%)

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
           V  ++ T+   +  C +  R DL +    ++++ G+         L++  C D + S+  
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 220 EL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----APDNFTYEE 274
           ++ LR++ E   +P+  +   L+   C++       ELLH M+A +R    APD  +Y  
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLH-MMADDRGGGSAPDVVSYTT 201

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VING  K     +AY  ++++ +R   PD V Y+++I  LCK   +  A ++   M+  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           ++PN  TYNS++HGYC  +  +EA    K+M   G     VTYN+L+  LC +GR+ EA 
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +F+ M ++G+  D+ TY TL+QGY  +G +V
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALV 353



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 23/350 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLE 142
           +I F + + S  G  PD+V+ N L D L       EAR      D +   G  P+  +  
Sbjct: 285 AIGFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRSTEARKI---FDSMTKRGLEPDIATYC 340

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----KIDRTDLVWK--- 194
             +Q     G + E       +   G+      +N  +L C      K+D   LV+    
Sbjct: 341 TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFN--ILICAYAKQEKVDEAMLVFSKMR 398

Query: 195 ---LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
              L  +++  G +I   C  G V +      Q++++GL P    +  LI   C    + 
Sbjct: 399 QHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWD 458

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  EL+  M+ R    +   +  +I+  CK  + +E+ ++F+ +   G  P+ + Y+T+I
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G C  G + +A K+   M   G+ P+  TYN++I+GYCR+  +++A  L KEM+  G  
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVS 578

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +TYN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 579 PNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCK 628



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 18/339 (5%)

Query: 101 GFSPDLVS-CNVL-----FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ + C +L       +LVE  A    +D +   G  P+ +   + I    +   +
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHAL---LDLMVRNGIHPDHHVFNILICAYAKQEKV 387

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           +EA   FSK+++ G+  ++ T+ + +    K    D     +  +I+ G          L
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL 447

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I + C   K  +  EL+ ++L+ G+      FN +I   C++       +L   MV    
Sbjct: 448 IHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGV 507

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +I+G C + K  EA ++ + +   G  PD V Y T+I+G C++  + DA  
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+  G+ PN  TYN ++ G         AK L+  +   G      TYN ++ GLC
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLC 627

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +  TDEA  +F+ +    +  +  T+N +I    K G+
Sbjct: 628 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 159/377 (42%), Gaps = 51/377 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  + ++   L   L   +    AMD     +      P+  S  + ++ LC+    +E
Sbjct: 117 GFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQE 176

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           A      + +    GS   + ++ + + G  K   +D  +  YH         D++    
Sbjct: 177 ALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I A C    + +  E+L  ++++G++P    +N ++  +C  +        L  M +  
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG 296

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +++ LCK+ +  EA ++F+ + +RG  PD   Y T++ G    G L +  
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M+  G+ P+ + +N +I  Y + + ++EA  +  +M   G     VTY  +I  L
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITY-------------------------------- 412
           C  G  D+A   FE+M  +G+  ++I Y                                
Sbjct: 417 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNT 476

Query: 413 ---NTLIQGYCKEGKIV 426
              N++I  +CKEG+++
Sbjct: 477 IFFNSIIHSHCKEGRVI 493



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/335 (23%), Positives = 150/335 (44%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD    N+L  +  +      AM     +   G +PN  +    I  LC+SG +++A
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDA 425

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+  +I  + S +      D+ D   +L  ++++ G          +I +
Sbjct: 426 MLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHS 485

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V E  +L   ++  G+ P    ++ LI  +C        ++LL +M +    PD
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C+  +  +A  +F ++   G  P+ + Y  ++ GL        A++++ 
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 605

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +   G      TYN ++HG C+ +  +EA R+ + +        T T+N +I  L   G
Sbjct: 606 GITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVG 665

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R DEA  LF   +  G+  +  TY  + +    +G
Sbjct: 666 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQG 700



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 14/282 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P+++    L  SL       +A ++ ++ LD  G   N       I   C+ G + E
Sbjct: 436 GLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDR-GICLNTIFFNSIIHSHCKEGRVIE 494

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           +   F  +  +GV  ++ T+++ + G     + D   KL   +   G          LI 
Sbjct: 495 SEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLIN 554

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C   ++ +   L ++++  G+ P    +N ++      +      EL   +       
Sbjct: 555 GYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQL 614

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++GLCK+    EA R+F +L       +T  +  +I  L K+G   +A+ ++
Sbjct: 615 ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLF 674

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
                 GL+PN +TY  M         LEE  +L   M D G
Sbjct: 675 VAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNG 716


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 170/367 (46%), Gaps = 16/367 (4%)

Query: 73  PLFFREF------LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAF 122
           PLF R F      L +     L++R F  +H H   +P   + N +  SL      ARA 
Sbjct: 114 PLFDRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRADLARAL 173

Query: 123 KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           +  +  +  +G+ P+  +    I   C +  ++ A   F K+   G    + ++ + + G
Sbjct: 174 RY-LSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEG 232

Query: 183 CIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
             +  R D   +L+ ++ +        L++  CN  +  EG  +LR++ E G  P   A+
Sbjct: 233 LCEAGRIDEAVELFGEMDQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAY 292

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             ++   C ++      E+L  M  +  AP   T   VIN  CK  +  +A RV   +K 
Sbjct: 293 AAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKL 352

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG  P+   Y  ++ G C  G +  A  +  +M   G+ P+  TYN +I G C   ++E 
Sbjct: 353 RGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIES 412

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A RL + M   G      TYN LI  LC  GRTD+A  LF+ +  +GI  + +T+N+LI 
Sbjct: 413 AFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLIN 472

Query: 418 GYCKEGK 424
           G CK GK
Sbjct: 473 GLCKSGK 479



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 31/328 (9%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P +V+C  + ++  +    + A +V ++ +   G  PN  +    +Q  C  G + +
Sbjct: 319 GLAPCVVTCTAVINAYCKEGRMSDALRV-LELMKLRGCKPNVWTYNALVQGFCNEGKVHK 377

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A    +K++  GV     T+N                           LI+  C DG + 
Sbjct: 378 AMTLLNKMRACGVNPDAVTYN--------------------------LLIRGQCIDGHIE 411

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
             + LLR +  DGL+ +   +N LI+  C+     +   L  ++  R   P+  T+  +I
Sbjct: 412 SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 471

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NGLCKS K   A++    +   G  PDT  Y++ I  LCKM    +      EM+ K + 
Sbjct: 472 NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 531

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   Y  +IH   +  N     R   EM+  G     VTY T +   C+ GR +EA ++
Sbjct: 532 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 591

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             EM++ G+  D + YNTL+ G+   G+
Sbjct: 592 LMEMSKNGVTVDTMAYNTLMDGHASIGQ 619



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 154/358 (43%), Gaps = 33/358 (9%)

Query: 101 GFSPDLVSCNVLF-----DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           G +PD V+ N+L      D  +E+ AF++ +  ++  G   +  +    I  LC+ G  +
Sbjct: 389 GVNPDAVTYNLLIRGQCIDGHIES-AFRL-LRLMEGDGLIADQYTYNALINALCKDGRTD 446

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A   F  L+  G+  +  T+NS + G  K  + D+ WK    ++ +G           I
Sbjct: 447 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 506

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +  C      EG   + ++L+  + P    +  +I +  +++N+G V+     MV+    
Sbjct: 507 EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN 566

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY   +   C   +  EA  V  ++ + G   DT+ Y T++ G   +G    A  +
Sbjct: 567 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSI 626

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV----------- 375
             +M     +PN++TY  ++    R+  +E+   L    + K    T V           
Sbjct: 627 LKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNE 686

Query: 376 ------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
                 TY++++ G    GRT+EA  L   M +  I  +   Y  L+  +CK  + ++
Sbjct: 687 FLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLD 744



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 29/353 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N L            AM  L+   + G +P+  +  L I+  C  G IE A
Sbjct: 354 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 413

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     ++  G+     T+N+ +    K  RTD    L+  L   G          LI  
Sbjct: 414 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 473

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK    ++ L +++  G  P+   ++  I   C+ K        +  M+ ++  P 
Sbjct: 474 LCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 533

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  VI+ L K R      R + ++   G  PD V YTT +   C  G L +A  +  
Sbjct: 534 TVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 593

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI------- 381
           EM   G+  +   YN+++ G+  I   + A  + K+M          TY  L+       
Sbjct: 594 EMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMR 653

Query: 382 ----------AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                     AG+       + + LF+ M +     +  TY+++++G+ ++G+
Sbjct: 654 LVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGR 706



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 159/352 (45%), Gaps = 29/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L + L ++    +A  FL+   S G +P+  +   +I+ LC+    +E 
Sbjct: 459 GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 518

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ +  V  S   +   +   +K     LV + + +++ SG           ++A
Sbjct: 519 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 578

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G+++E   +L ++ ++G+  +  A+N L+              +L  M +    P+
Sbjct: 579 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 638

Query: 269 NFTY-------------EEVI----NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
            FTY             E+V+     G+ K+ +  + + +F+ +K+  ++P++  Y++++
Sbjct: 639 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 698

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G  + G   +A  +   M    +  NE  Y +++  +C+     +A  L   M+  G+ 
Sbjct: 699 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 758

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              ++Y  L++GL   G+TD+A  +F     K    D I +  +I G  K+G
Sbjct: 759 PQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKG 810



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 52/94 (55%)

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           H    P   TYN++I   CR  +L  A R    M+  G+     T+N+LI G C   + D
Sbjct: 146 HAPPAPTAPTYNAVIRSLCRRADLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVD 205

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  LF++M  +G  +DV++Y TLI+G C+ G+I
Sbjct: 206 VARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRI 239



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 25/269 (9%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP 138
           L +  NVL+ +       S  G + D ++ N L D          A+  L   T  +  P
Sbjct: 585 LNEAENVLMEM-------SKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVP 637

Query: 139 NSLELYI--QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N    +I  + L    L+E+       L   GV+ +I+  +  + G         V K  
Sbjct: 638 NQFTYFILLRHLVRMRLVEDVL----PLTPAGVWKAIELTD--VFGLFD------VMKKN 685

Query: 197 HDLIESGY---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
             L  SG    +++ F  DG+  E   L+  + ED +      +  L++ FC+ K +   
Sbjct: 686 EFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDA 745

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L+ +M+     P   +Y+ +++GL    +  +A  +F + + + Y PD +++  +I G
Sbjct: 746 WVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDG 805

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           L K G    +R+M   +      P+  TY
Sbjct: 806 LIKKGHSDISREMIIMLERMNCRPSHQTY 834


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 150/290 (51%), Gaps = 9/290 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C  GL+EEAF   + + + G+  S+ T+N+ + G  K  R      +  +++  G 
Sbjct: 8   IGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGL 67

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+   C     SE  E+  ++L  G+VP+  +F+ L++ F   ++  +   
Sbjct: 68  SPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALV 127

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
               M      PDN  Y  +++G C++   LEA ++ +++ E+G V D + Y T+++GLC
Sbjct: 128 YFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLC 187

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   L DA K++ EM+ +G LP+ YT+ ++IHG+C+  N+ +A  L   M  +      V
Sbjct: 188 KEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIV 247

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            YNTLI G C  G  ++A  L++ M  + IF + ITY  LI  YC  G +
Sbjct: 248 AYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHV 297



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 161/330 (48%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P L + N + + L +    ARA  + ++ L+  G SP+  +    +   C      E
Sbjct: 31  GLKPSLFTYNAIINGLCKKGRYARAKGILIEMLN-IGLSPDTTTYNTLLVESCRRDNFSE 89

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A   F ++   GV   + +++S +    +    D     + D+ + G          L+ 
Sbjct: 90  AKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMH 149

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C +G + E  ++  ++LE G V +  A+N +++  C++K      +L   MV R   P
Sbjct: 150 GYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALP 209

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +T+  +I+G C+     +A  +F  + +R   PD V Y T+I G CK+G +  A ++W
Sbjct: 210 DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELW 269

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI + + PN  TY  +I+ YC + ++ EA RL   M++KG   T VT NT+I G C  
Sbjct: 270 DGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRS 329

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           G + +A      M  KG+  D I+YNTLI 
Sbjct: 330 GDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 121/221 (54%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI A+C +G + E +E++  + + GL P    +N +I+  C+K  + R   +L  M+   
Sbjct: 7   LIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIG 66

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  ++   C+     EA  +F ++  +G VPD V +++++    +   L  A 
Sbjct: 67  LSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQAL 126

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             + +M   GL+P+   Y  ++HGYCR  N+ EA ++  EML++G     + YNT++ GL
Sbjct: 127 VYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGL 186

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C      +A  LF+EM ++G   D  T+ TLI G+C++G +
Sbjct: 187 CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNM 227



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/156 (32%), Positives = 85/156 (54%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I   C+     EA+ + N + ++G  P    Y  +I+GLCK G    A+ +  EM
Sbjct: 3   TYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEM 62

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           ++ GL P+  TYN+++   CR DN  EAK +  EML +G     V++++L+A    +   
Sbjct: 63  LNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHL 122

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           D+A   F +M + G+  D + Y  L+ GYC+ G ++
Sbjct: 123 DQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNML 158



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           VTYNTLI   C  G  +EA+ +   MA KG+   + TYN +I G CK+G+
Sbjct: 2   VTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGR 51


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 183/385 (47%), Gaps = 13/385 (3%)

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
           R+  R  Q L +   + +  +       + +Q  V   +   + L S +G  PD+VS N 
Sbjct: 160 RSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPS-FGCEPDIVSYNA 218

Query: 112 LFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           +   L  A+ +    + +      G  PN  +    I  LC +GL E+   A S++ E G
Sbjct: 219 VLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHG 278

Query: 169 VFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGYLIQAFCNDGKVSEGY 219
               ++ + + + G  K    ++          + L  +++    +++  C+  +  E  
Sbjct: 279 CTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAE 338

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           +LL ++ ++    ++  FN L+  FC+     RV ELL  M+     PD  TY  VING 
Sbjct: 339 DLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGF 398

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK     EA  +  ++   G  P+T+ YT V+ GLC+     DA+++   MI +G LPN 
Sbjct: 399 CKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNP 458

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T+N++I+  C+   +E+A  L K+ML  G     ++Y+T+I GL   G+T+EA  L   
Sbjct: 459 VTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNV 518

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGK 424
           M  KGI  + I Y+++     +EG+
Sbjct: 519 MINKGITPNTIIYSSMASALSREGR 543



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 138/299 (46%), Gaps = 9/299 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK------IDRT 189
           PN  +    ++ LC  GLI +A     ++   G   +    +  L    +        R 
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 190 DLVWKLYHDLIESG---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             V       ++SG    ++ A C  G V EG ELLR++   G  P+  ++N ++   C 
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            K +  V EL+  MV     P+  T+  +I  LC++    + +   + + E G  PD  M
Sbjct: 226 AKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRM 285

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y T+I G+CK G    A  +   M   GL PN   YN+++ G C  +  EEA+ L  EM 
Sbjct: 286 YATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMF 345

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +      VT+N L+   C +G  D    L E+M + G   DVITY T+I G+CKEG +
Sbjct: 346 QEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLV 404



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 153/329 (46%), Gaps = 12/329 (3%)

Query: 109 CNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           C+V+ ++      F+ A   +  L + G + +  +  L +  +CE G ++E      KL 
Sbjct: 146 CHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLP 205

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVS 216
             G    I ++N+ L G     R D V +L  +++  G          LI   C +G   
Sbjct: 206 SFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAYLCRNGLFE 265

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           + +E L Q+ E G  P+   +  +I   C+  +    +++L  M +    P+   Y  V+
Sbjct: 266 QVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVL 325

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            GLC + +  EA  +  ++ +     D V +  ++   C+ G +    ++  +M+  G +
Sbjct: 326 KGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCI 385

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY ++I+G+C+   ++EA  L K M   G    T++Y  ++ GLC   R  +A  L
Sbjct: 386 PDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQEL 445

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              M Q+G   + +T+NTLI   CK+G +
Sbjct: 446 ISHMIQQGCLPNPVTFNTLINFMCKKGLV 474



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N +   L  A  ++ A D L        P    +  + +   C++GL++ 
Sbjct: 312 YGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDR 371

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++ E G    + T+ + + G  K    D    L  ++   G          +++
Sbjct: 372 VIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLK 431

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   +  +  EL+  +++ G +P    FN LI+  C+K    +  ELL  M+    +P
Sbjct: 432 GLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSP 491

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G      +M+
Sbjct: 492 DLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMF 551

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    + A      M+  G      TY  LI GL   
Sbjct: 552 DSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASE 611

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  L  E+  +   R
Sbjct: 612 GLVREAQDLLSELCSRRAVR 631



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 94/220 (42%), Gaps = 5/220 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENT-AFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +I  +C  G+V+    L   V     VP N   +  ++   C +        +L  M  R
Sbjct: 82  MIAGYCRAGQVAAARRLAAAVP----VPPNAYTYFPIVRSLCARGLIADALTVLDEMPLR 137

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             A        ++   C+      A R    L  +G   D+     V+  +C+ G + + 
Sbjct: 138 GCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEG 197

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  ++   G  P+  +YN+++ G C     ++ + L  EM+  G      T+NTLIA 
Sbjct: 198 VELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVGCPPNVATFNTLIAY 257

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           LC +G  ++ +    +M + G   D+  Y T+I G CK+G
Sbjct: 258 LCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDG 297



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/178 (20%), Positives = 63/178 (35%), Gaps = 35/178 (19%)

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG--------------------- 313
           +I  LC + +  +A R    L   G     V Y  +I G                     
Sbjct: 50  LIRSLCAAGRTADAARA---LDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVPVPP 106

Query: 314 -----------LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
                      LC  G + DA  +  EM  +G        + ++   CR      A R  
Sbjct: 107 NAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRAL 166

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           + +  KG    +   N +++ +C  G  DE   L  ++   G   D+++YN +++G C
Sbjct: 167 QVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLC 224



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           + +I  LC  G   DA +    +   G       YN+MI GYCR   +  A+RL   +  
Sbjct: 48  SALIRSLCAAGRTADAAR---ALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAV-- 102

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                   TY  ++  LC  G   +A  + +EM  +G        + +++  C+ G
Sbjct: 103 -PVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGG 157


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 174/353 (49%), Gaps = 28/353 (7%)

Query: 101 GFSPDLVSCNVLFDSL-VEARAFKVAMDFL--DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+SP++V+ N L   L +E R  +    FL     G +P+  +    I+ LC +G I  A
Sbjct: 134 GYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIA 193

Query: 158 FCAFSKL------KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------------- 197
                ++       E+    ++ T+N  + G  K+ R D   +L+               
Sbjct: 194 LKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLD 253

Query: 198 -----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                D++    LI   C +GKV E  +LL  ++E G+VP+   +N LI  FC   +   
Sbjct: 254 QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNS 313

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             EL  +M ++   PD  +Y  +ING  K+ K  EA +++N++   G  P+ + Y +++ 
Sbjct: 314 ARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLK 373

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G+   G + DA+K++  M   G+  N YTY   + G C+ D L EA +L  E+    +  
Sbjct: 374 GIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKL 433

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                N LI GLC  G+ + A+ LFE+++ +G   +V+TY  +I G+C+EG++
Sbjct: 434 EIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQV 486



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 174/387 (44%), Gaps = 29/387 (7%)

Query: 63  SDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           S IPS N     F R           ++ FF  +      +P L S N L   L + + +
Sbjct: 27  SAIPSPNPQIAFFLRHCKTGNVTATHALHFFHLMMRSTP-TPSLSSFNHLLSGLAKIKHY 85

Query: 123 KVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
                  +    +G S +  +L + + CLC    + E F AF+ +   G   +I T+N+ 
Sbjct: 86  SQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTL 145

Query: 180 LLGCIKIDRTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELLRQVLED-- 228
           + G     R     +L+          D++  G LI+  C  G ++   +L +++L D  
Sbjct: 146 IKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDIS 205

Query: 229 ----GLVPENTAFNKLISRFCEKKNFGRVSELL----------HTMVARNRAPDNFTYEE 274
                  P    +N ++   C+        +L           + M+ +   PD  T+  
Sbjct: 206 RYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNV 265

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+ LCK  K +EA ++   + E G VPD V Y ++I G C +G L  AR+++  M  KG
Sbjct: 266 LIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKG 325

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             P+  +YN +I+GY +   +EEA +L+ EML  G     +TY++L+ G+ L G+ D+A 
Sbjct: 326 CEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAK 385

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            LF  M   GI  +  TY   + G CK
Sbjct: 386 KLFSVMKAHGIAENSYTYGIFLDGLCK 412



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 18/235 (7%)

Query: 210 CNDGKVSEGYEL--LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           C  G V+  + L     ++     P  ++FN L+S   + K++ +V  L + M     + 
Sbjct: 43  CKTGNVTATHALHFFHLMMRSTPTPSLSSFNHLLSGLAKIKHYSQVFSLYNQMRLSGLSS 102

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T   ++N LC   +  E +  F  +  RGY P+ V Y T+I GLC    + +A +++
Sbjct: 103 DRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLF 162

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK------GYGETTVTYNTLI 381
             M   G  P+  TY ++I G C   N+  A +LH+EML+             +TYN ++
Sbjct: 163 LRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIV 222

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIF----------RDVITYNTLIQGYCKEGKIV 426
            GLC  GR DEA  LFEEM  +G+            D++T+N LI   CKEGK++
Sbjct: 223 DGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTLCKEGKVI 277



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 115/238 (48%), Gaps = 16/238 (6%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +L+         S+ + L  Q+   GL  +    N L++  C              ++ R
Sbjct: 74  HLLSGLAKIKHYSQVFSLYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRR 133

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             +P+  TY  +I GLC   +  EA R+F  +++ G  PD V Y T+I GLC  G +  A
Sbjct: 134 GYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIA 193

Query: 324 RKMWFEMIHK------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHK----------EMLD 367
            K+  EM++          PN  TYN ++ G C++   +EAK+L +          EMLD
Sbjct: 194 LKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLD 253

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +G     VT+N LI  LC  G+  EA  L   M + GI  D++TYN+LI+G+C  G +
Sbjct: 254 QGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDL 311



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 156/344 (45%), Gaps = 24/344 (6%)

Query: 104 PDLVSCNVLFDSLV------EARAF--------KVAMDFLDSTGFSPNPNSLELYIQCLC 149
           P++++ N++ D L       EA+           +  + LD  G  P+  +  + I  LC
Sbjct: 213 PNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQ-GLQPDMVTFNVLIDTLC 271

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLI 200
           + G + EA      + E G+   + T+NS + G   +   +   +L+          D+I
Sbjct: 272 KEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVI 331

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI  +    KV E  +L  ++L  G  P    ++ L+             +L   M
Sbjct: 332 SYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVM 391

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            A   A +++TY   ++GLCK+    EA ++F +LK   +  +      +I GLCK G L
Sbjct: 392 KAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKL 451

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ ++ ++G  PN  TY  MIHG+CR   +++A  L ++M   G     +TYNTL
Sbjct: 452 ETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTL 511

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + G     + +E   L   MAQK +  D IT + ++    K+ K
Sbjct: 512 MRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEK 555



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 141/326 (43%), Gaps = 19/326 (5%)

Query: 101 GFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+V+ NVL D+L      +EA+     +  +  +G  P+  +    I+  C  G +
Sbjct: 255 GLQPDMVTFNVLIDTLCKEGKVIEAKKL---LGVMIESGIVPDLVTYNSLIEGFCMVGDL 311

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
             A   F  +   G    + ++N  + G  K  + +   KLY++++  G          L
Sbjct: 312 NSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSL 371

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++     GKV +  +L   +   G+   +  +   +   C+        +L   + + N 
Sbjct: 372 LKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNF 431

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +      +I+GLCK+ K   A+ +F  L   G+ P+ V YT +IHG C+ G +  A  
Sbjct: 432 KLEIENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANV 491

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M   G  P+  TYN+++ G+   + LEE  +L   M  K      +T + ++  L 
Sbjct: 492 LIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLS 551

Query: 386 LHGRTDEAYHLFEEMA-QKGIFRDVI 410
              +  E  HL      QKG+ + ++
Sbjct: 552 KDEKYQECLHLLPRFPIQKGVDKHLL 577


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/346 (30%), Positives = 164/346 (47%), Gaps = 23/346 (6%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLV------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLC 149
           L S    SPD+++ NVL D         EA++    M  +   G+ PN  +  + I C C
Sbjct: 198 LFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSL---MKEILKAGYEPNVFTYSIIINCYC 254

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           +   +EEA+  F K+ E     +  T+N+ + G  K    +   KL+ ++ + G      
Sbjct: 255 KLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIV 314

Query: 204 ---YLIQAFCND-GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
               LI + C   G V    +L  ++   GL P    +N LI  FC+ +      +    
Sbjct: 315 TYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDE 374

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M  +  AP+  TY  +I+GLCK R+  EA +   D+K  GY P  V Y  +I+G CK G 
Sbjct: 375 MEGKC-APNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGE 433

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  A   + +M   G  PN   +N++I G C+ +   +  RL   M  +G     +TYN 
Sbjct: 434 LKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNC 493

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI+GLC   R ++A  LF+ MA      +V T+N LI+G C + K+
Sbjct: 494 LISGLCSANRVEDAQRLFDGMA---CAPNVTTFNFLIRGLCAQKKV 536



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/363 (25%), Positives = 166/363 (45%), Gaps = 55/363 (15%)

Query: 110 NVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N L   LV AR    A+       +  F+PN ++  + I+  C+ G + +A   FS +K 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLY--------------HDLIESGYLIQAFCND 212
            G+  +  T N+ LLG  +I +     KL+              H+++  G+ +     D
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 213 G----------------------------------KVSEGYELLRQVLEDGLVPENTAFN 238
                                              ++ +  E  +++   G+ P+  +++
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            L+S   +    GR++E      A   +PD  TY  +++G CK  +  EA  +  ++ + 
Sbjct: 181 ILLSALSDS---GRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKA 237

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           GY P+   Y+ +I+  CK+  + +A +++ +MI    +PN  T+N++I G+C+   LE+A
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDA 297

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLC-LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            +L  EM   G   T VTYNTLI  LC   G    A  LF ++   G+   ++TYN+LIQ
Sbjct: 298 IKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQ 357

Query: 418 GYC 420
           G+C
Sbjct: 358 GFC 360



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 131/309 (42%), Gaps = 52/309 (16%)

Query: 101 GFSPD------LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G+ P+      +++C    D + EA  ++V M  ++S    PN  +    I   C++G++
Sbjct: 238 GYEPNVFTYSIIINCYCKLDKVEEA--WEVFMKMIESNCV-PNAVTFNTLIAGFCKAGML 294

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY--------- 204
           E+A   F++++++G   +I T+N+ +   C K         L++ L  +G          
Sbjct: 295 EDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNS 354

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LIQ FC+  ++SE  +   + +E    P    ++ LI   C+ +     ++ L  M A  
Sbjct: 355 LIQGFCDARRLSEAMQYFDE-MEGKCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHG 413

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   TY  +ING CK  +   A   F  +K  G  P+TV++ T+I GLCK     D  
Sbjct: 414 YTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGL 473

Query: 325 KMWFEMIHKGLLPNEYTYNSMI--------------------------------HGYCRI 352
           ++   M  +G  P+  TYN +I                                 G C  
Sbjct: 474 RLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMACAPNVTTFNFLIRGLCAQ 533

Query: 353 DNLEEAKRL 361
             +EEA+ +
Sbjct: 534 KKVEEARNI 542



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 52/193 (26%), Positives = 93/193 (48%), Gaps = 4/193 (2%)

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N L+S     +   +   L   ++A   AP+  TY  +I G CK  +  +A  VF+D+K 
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G +P+     T++ GLC++G +  A K++ EM     LP   ++N ++ G+     + +
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLH----GRTDEAYHLFEEMAQKGIFRDVITYN 413
           A    ++M        T TYN ++ GLC       R ++A   F+EM   G+  D+ +Y+
Sbjct: 121 ALAHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYH 180

Query: 414 TLIQGYCKEGKIV 426
            L+      G++ 
Sbjct: 181 ILLSALSDSGRMA 193



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 46/153 (30%), Positives = 80/153 (52%)

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GL  +RK  +A R+F ++    + P+   Y  +I G CK G +  A  ++ +M   G
Sbjct: 3   LLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           LLPN  T N+++ G C I  +  A +L +EM    +  T+ ++N L+ G  + GR  +A 
Sbjct: 63  LLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDAL 122

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              ++M +        TYN +++G C E K  N
Sbjct: 123 AHLQDMRKSSSSVATGTYNLVLKGLCWENKSAN 155



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 57/224 (25%), Positives = 98/224 (43%), Gaps = 7/224 (3%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+    +  K  +   L ++VL     P    +N LI  FC+     +   +   M +  
Sbjct: 3   LLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSG 62

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  T   ++ GLC+  +   A ++F +++   ++P +  +  ++ G    G + DA 
Sbjct: 63  LLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRDAL 122

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYC----RIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
               +M          TYN ++ G C      + LE+A    KEM   G      +Y+ L
Sbjct: 123 AHLQDMRKSSSSVATGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEPDLESYHIL 182

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           ++ L   GR  EA+ LF  M       D++TYN L+ GYCK G+
Sbjct: 183 LSALSDSGRMAEAHALFSAMTCS---PDIMTYNVLMDGYCKIGQ 223


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +    E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 75  ITAYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 134

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 135 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 194

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K   A  +F+++  +G VP+ V +TT+I G C
Sbjct: 195 LKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHC 254

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 255 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKGLKPDKF 314

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 315 TYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 366


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  P++V+ N + +       F+ A      +      P+  +   +I  LC+   IEE
Sbjct: 246 YGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEE 305

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A     KL E G+  +  T+N+ + GC      D  +    +++  G          LI 
Sbjct: 306 ASGVLCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIH 365

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A   + ++ E  ++++++ E G+ P+   +N  I+ +C   N  +   L   MV +N  P
Sbjct: 366 ALFLEKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRP 425

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+   K  +  EA   F    + G +PD +M+  +I G C  G +  A ++ 
Sbjct: 426 TVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLL 485

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM +  ++P+E T+N+++ GYCR   +EEAK+L  EM ++G     ++YNTLI+G    
Sbjct: 486 KEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKR 545

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G   +A  +F+EM   G    ++TYN LIQGY K G+
Sbjct: 546 GDMKDALEVFDEMLSLGFDPTLLTYNALIQGYSKIGE 582



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 148/323 (45%), Gaps = 29/323 (8%)

Query: 106 LVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
           +V+ N++ + L     +K A DF   ++  G  PN  +    I   C  G  E A   F 
Sbjct: 217 IVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFK 276

Query: 163 KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELL 222
            +K+  +     T+NS                           I   C + ++ E   +L
Sbjct: 277 TMKDKNLKPDCYTYNS--------------------------FISRLCKERRIEEASGVL 310

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++LE GLVP    +N LI   C K +  +       M+ R      FTY  +I+ L   
Sbjct: 311 CKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLE 370

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           ++  EA  +  +++E+G  PD V Y   I+G C+ G    A  ++ EM+ K + P   TY
Sbjct: 371 KRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETY 430

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
            S+I  + + + + EA+   K+ + +G     + +N LI G C++G  D A+ L +EM  
Sbjct: 431 TSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDN 490

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
             +  D +T+NTL+QGYC+E K+
Sbjct: 491 AKVVPDEVTFNTLMQGYCRERKV 513



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 146/293 (49%), Gaps = 9/293 (3%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +L +   C+    +EA    + +KE  +    +T NS L   +K+++  + W +Y ++++
Sbjct: 151 DLLLSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVK 210

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                       +I   C +GK  +  + +  +   G+ P    +N +I+ +C +  F  
Sbjct: 211 MNIKSSIVTFNIMINILCREGKWKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEA 270

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
            S++  TM  +N  PD +TY   I+ LCK R+  EA  V   L E G VP+ V Y  +I 
Sbjct: 271 ASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALID 330

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C  G L  A     EM+++G++ + +TYN +IH       +EEA+ + KEM +KG   
Sbjct: 331 GCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKGVEP 390

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VTYN  I G C  G   +A  LF+EM +K I   V TY +LI  + K  ++
Sbjct: 391 DVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRM 443



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 137/296 (46%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L D          A  + D   + G   +  +  L I  L     IEEA
Sbjct: 317 GLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEA 376

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++E GV   + T+N  + G  +         L+ +++E            LI  
Sbjct: 377 EDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDV 436

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F    ++SE  E  ++ +++G++P+   FN LI   C   N  R  +LL  M      PD
Sbjct: 437 FGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAKVVPD 496

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++ G C+ RK  EA ++ +++KERG  PD + Y T+I G  K G + DA +++ 
Sbjct: 497 EVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFD 556

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           EM+  G  P   TYN++I GY +I   + A+ L +EM  KG      TY  +I  +
Sbjct: 557 EMLSLGFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 95/226 (42%), Gaps = 47/226 (20%)

Query: 247 KKNFGRVSELLHTM----------VARNR--APDNFTYEEVINGLCKSRKRLEAYRVFND 294
           K +F  +  +LHT           +ARNR        ++ +++  C+ RK  EA    N 
Sbjct: 113 KPSFHILQPILHTTTPTVIFNELSLARNRLNVKTTLVFDLLLSAYCQFRKPDEALECLNL 172

Query: 295 LKERGYVPDT-----------------------------------VMYTTVIHGLCKMGW 319
           +KE   +P T                                   V +  +I+ LC+ G 
Sbjct: 173 MKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNIKSSIVTFNIMINILCREGK 232

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              A+     M   G+ PN  TYN++I+GYC     E A ++ K M DK       TYN+
Sbjct: 233 WKKAKDFIGHMEVYGVKPNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNS 292

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            I+ LC   R +EA  +  ++ + G+  + +TYN LI G C +G +
Sbjct: 293 FISRLCKERRIEEASGVLCKLLESGLVPNAVTYNALIDGCCNKGDL 338


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K   A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
               EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DGANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +   
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMHRDGHAPSVVTYNVLMNG 431


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 173/339 (51%), Gaps = 17/339 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           + G  PD+++C  L      +   K A   M+ L+++G  P+  +  + I   C+SG I+
Sbjct: 134 YQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEID 193

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALL-----GCIK-----IDRTDLVWKLYHDLIESGYL 205
           +A      L+ M V   + T+N+ L      G +K     +DR  L  + Y D+I    L
Sbjct: 194 KAL---EVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDR-QLQRECYPDVITYTIL 249

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+A CND  V +  +LL ++ + G  P+   +N LI+  C++       + L+ M +   
Sbjct: 250 IEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGC 309

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  T+  ++  +C + + ++A R+ +D+  +G  P  V +  +I+ LC+   LG A  
Sbjct: 310 KPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAID 369

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M   G +PN  +YN ++HG+C+   ++ A    + M+ +G     VTYNTL+  LC
Sbjct: 370 VLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC 429

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G+ D A  +  +++ KG    +ITYNT+I G  K GK
Sbjct: 430 KDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 468



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+V+ N +  SL ++   K AM+ LD        P+  +  + I+  C    + +A 
Sbjct: 204 VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAM 263

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
               ++++ G    + T+N  + G  K  R D   K  +++         I    ++++ 
Sbjct: 264 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSM 323

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  +   LL  +L  G  P    FN LI+  C K+  GR  ++L  M      P++
Sbjct: 324 CSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNS 383

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +++G C+ +K   A      +  RG  PD V Y T++  LCK G +  A ++  +
Sbjct: 384 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQ 443

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +  KG  P   TYN++I G  ++   E A  L +EM  KG     +TY+TL+ GL   G+
Sbjct: 444 LSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGK 503

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA  +F +M    I    +TYN ++ G CK
Sbjct: 504 VDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 535



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 12/327 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++         AM  LD     G  P+  +  + I  +C+ G ++EA   
Sbjct: 241 PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 300

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            + +   G   ++ T N  L       R     +L  D++  G          LI   C 
Sbjct: 301 LNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCR 360

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +    ++L ++ + G VP + ++N L+  FC++K   R  E L  MV+R   PD  T
Sbjct: 361 KRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVT 420

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K   A  + N L  +G  P  + Y TVI GL K+G    A ++  EM 
Sbjct: 421 YNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMR 480

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY++++ G  R   ++EA ++  +M       + VTYN ++ GLC   +T 
Sbjct: 481 RKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTS 540

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQG 418
            A      M +KG      TY  LI+G
Sbjct: 541 RAIDFLAYMVEKGCKPTEATYTILIEG 567



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 141/300 (47%), Gaps = 20/300 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ NVL + + +      A+ FL+   S G  PN  +  + ++ +C +G   +A
Sbjct: 273 GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDA 332

Query: 158 FCAFSKLKEMGVFGSIKTWN--------SALLGCIKIDRTDLVWKL-YHDLIESGY---- 204
               S +   G   S+ T+N          LLG       D++ K+  H  + +      
Sbjct: 333 ERLLSDMLRKGCSPSVVTFNILINFLCRKRLLG----RAIDVLEKMPKHGCVPNSLSYNP 388

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  FC + K+    E L  ++  G  P+   +N L++  C+        E+L+ + ++ 
Sbjct: 389 LLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKG 448

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P   TY  VI+GL K  K   A  +  +++ +G  PD + Y+T++ GL + G + +A 
Sbjct: 449 CSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAI 508

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++ +M    + P+  TYN+++ G C+      A      M++KG   T  TY  LI G+
Sbjct: 509 KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           E  +    +  +G +PD +  T++I G C+ G    A ++   + + G +P+  TYN +I
Sbjct: 124 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYNVLI 183

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GYC+   +++A  + + M         VTYNT++  LC  G+  EA  + +   Q+  +
Sbjct: 184 GGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQRECY 240

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DVITY  LI+  C +  +
Sbjct: 241 PDVITYTILIEATCNDSGV 259



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%)

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           E+  N  +    R   LEE  +  + M+ +G     +   +LI G C  G+T +A  + E
Sbjct: 106 EFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIME 165

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   G   DVITYN LI GYCK G+I
Sbjct: 166 ILENSGAVPDVITYNVLIGGYCKSGEI 192


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 165/336 (49%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ + +  +L + +A   AM+ L +    G  PN  +    +   C S   +EA 
Sbjct: 227 ISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAI 286

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               K++  GV   + T+NS +    K  R+    K++  + + G          L+Q +
Sbjct: 287 GFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGY 346

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G + E + LL  ++ +G+ P++  FN LI  + +++       +   M      P+ 
Sbjct: 347 ATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNV 406

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  VI  LCKS    +A   F  + + G  P+ ++YT++IH LC       A ++  E
Sbjct: 407 VTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILE 466

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ +G+  N   +NS+IH +C+   + E+++L   M+  G     +TY+TLI G CL G+
Sbjct: 467 MLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK 526

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEA  L   M   G+  D +TYNTLI GYC+  ++
Sbjct: 527 MDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRM 562



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 166/341 (48%), Gaps = 20/341 (5%)

Query: 101 GFSPDLVS----CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +PD+VS     N  F      +A+    + LD    SP+  +    I  LC+   +++
Sbjct: 191 GSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRR-ISPDVVTYSSIIAALCKGQAMDK 249

Query: 157 AFCAFSKLKEMGVFGSIKTWNSAL------------LGCIKIDRTDLVWKLYHDLIESGY 204
           A    + + + GV  +  T+NS L            +G +K  R+D V     D++    
Sbjct: 250 AMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEP---DVVTYNS 306

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +G+ +E  ++   + + GL P+   +  L+  +  K     +  LL  MV   
Sbjct: 307 LMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNG 366

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+  +  +I    K  K  EA  VF+ +++ G  P+ V Y  VI  LCK G + DA 
Sbjct: 367 IHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAM 426

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             + +MI +GL PN   Y S+IH  C  D  ++A+ L  EMLD+G    T+ +N++I   
Sbjct: 427 LYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSH 486

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR  E+  LF+ M + G+  +VITY+TLI GYC  GK+
Sbjct: 487 CKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKM 527



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 86/272 (31%), Positives = 147/272 (54%), Gaps = 15/272 (5%)

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
           V  ++ T+   +  C +  R DL +    ++++ G+         L++  C D + S+  
Sbjct: 83  VTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAM 142

Query: 220 EL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----APDNFTYEE 274
           ++ LR++ E   +P+  +   L+   C++       ELLH M+A +R    APD  +Y  
Sbjct: 143 DIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLH-MMADDRGGGSAPDVVSYTT 201

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VING  K     +AY  ++++ +R   PD V Y+++I  LCK   +  A ++   M+  G
Sbjct: 202 VINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNG 261

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           ++PN  TYNS++HGYC  +  +EA    K+M   G     VTYN+L+  LC +GR+ EA 
Sbjct: 262 VMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEAR 321

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +F+ M ++G+  D+ TY TL+QGY  +G +V
Sbjct: 322 KIFDSMTKRGLEPDIATYCTLLQGYATKGALV 353



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 161/350 (46%), Gaps = 23/350 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLE 142
           +I F + + S  G  PD+V+ N L D L       EAR      D +   G  P+  +  
Sbjct: 285 AIGFLKKMRSD-GVEPDVVTYNSLMDYLCKNGRSTEARKI---FDSMTKRGLEPDIATYC 340

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-----KIDRTDLVWK--- 194
             +Q     G + E       +   G+      +N  +L C      K+D   LV+    
Sbjct: 341 TLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFN--ILICAYAKQEKVDEAMLVFSKMR 398

Query: 195 ---LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
              L  +++  G +I   C  G V +      Q++++GL P    +  LI   C    + 
Sbjct: 399 QHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWD 458

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +  EL+  M+ R    +   +  +I+  CK  + +E+ ++F+ +   G  P+ + Y+T+I
Sbjct: 459 KAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLI 518

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G C  G + +A K+   M   G+ P+  TYN++I+GYCR+  +++A  L KEM+  G  
Sbjct: 519 DGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSGVS 578

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +TYN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 579 PNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCK 628



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 155/339 (45%), Gaps = 18/339 (5%)

Query: 101 GFSPDLVS-CNVL-----FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ + C +L       +LVE  A    +D +   G  P+ +   + I    +   +
Sbjct: 331 GLEPDIATYCTLLQGYATKGALVEMHAL---LDLMVRNGIHPDHHVFNILICAYAKQEKV 387

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           +EA   FSK+++ G+  ++ T+ + +    K    D     +  +I+ G          L
Sbjct: 388 DEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSL 447

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I + C   K  +  EL+ ++L+ G+      FN +I   C++       +L   MV    
Sbjct: 448 IHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGV 507

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +I+G C + K  EA ++ + +   G  PD V Y T+I+G C++  + DA  
Sbjct: 508 KPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALA 567

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+  G+ PN  TYN ++ G         AK L+  +   G      TYN ++ GLC
Sbjct: 568 LFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLC 627

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +  TDEA  +F+ +    +  +  T+N +I    K G+
Sbjct: 628 KNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 666



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 154/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD    N+L  +  +      AM     +   G +PN  +    I  LC+SG +++A
Sbjct: 366 GIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDA 425

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+  +I  + S +      D+ D   +L  ++++ G          +I +
Sbjct: 426 MLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNTIFFNSIIHS 485

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V E  +L   ++  G+ P    ++ LI  +C        ++LL +M +    PD
Sbjct: 486 HCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPD 545

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING C+  +  +A  +F ++   G  P+ + Y  ++ GL        A++++ 
Sbjct: 546 CVTYNTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYV 605

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +   G      TYN ++HG C+ +  +EA R+ + +        T T+N +I  L   G
Sbjct: 606 GITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVG 665

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R DEA  LF  ++  G+  DV TY+ + +   ++G
Sbjct: 666 RNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQG 700



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/377 (21%), Positives = 159/377 (42%), Gaps = 51/377 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  + ++   L   L   +    AMD     +      P+  S  + ++ LC+    +E
Sbjct: 117 GFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQE 176

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           A      + +    GS   + ++ + + G  K   +D  +  YH         D++    
Sbjct: 177 ALELLHMMADDRGGGSAPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSS 236

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I A C    + +  E+L  ++++G++P    +N ++  +C  +        L  M +  
Sbjct: 237 IIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDG 296

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +++ LCK+ +  EA ++F+ + +RG  PD   Y T++ G    G L +  
Sbjct: 297 VEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMH 356

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M+  G+ P+ + +N +I  Y + + ++EA  +  +M   G     VTY  +I  L
Sbjct: 357 ALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGLNPNVVTYGAVIGIL 416

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITY-------------------------------- 412
           C  G  D+A   FE+M  +G+  ++I Y                                
Sbjct: 417 CKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEELILEMLDRGICLNT 476

Query: 413 ---NTLIQGYCKEGKIV 426
              N++I  +CKEG+++
Sbjct: 477 IFFNSIIHSHCKEGRVI 493


>gi|115487378|ref|NP_001066176.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|77553036|gb|ABA95832.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113648683|dbj|BAF29195.1| Os12g0152600 [Oryza sativa Japonica Group]
 gi|125535802|gb|EAY82290.1| hypothetical protein OsI_37500 [Oryza sativa Indica Group]
 gi|125578525|gb|EAZ19671.1| hypothetical protein OsJ_35247 [Oryza sativa Japonica Group]
          Length = 716

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 165/337 (48%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA-MDFLD--STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N +   +  +   + A M F++  + G  P+  +    I   C++G ++EA
Sbjct: 332 GIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEA 391

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------YLIQAFC 210
              F  LK  G+  S+ T+N  L G  ++   +   +   +++E G       Y I    
Sbjct: 392 LWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQGCQPDVSTYTI--LM 449

Query: 211 NDGKVSEGYELLRQ----VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           N  +      ++R+    +L  GL P+  A+N  IS      +     +L   M++R  +
Sbjct: 450 NGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAFQLTEVMISRGIS 509

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            D  TY   ++GLCKS    +AY ++  +   G  PD + YT +IH  C+ G L +AR +
Sbjct: 510 SDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAHCERGRLREARDI 569

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+  GL P+  TY   IH YCR  NL  A    ++ML++G     VTYN LI  LC 
Sbjct: 570 FDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCR 629

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            GRT+ AY  F EM ++G+  +  TY  LI G CKEG
Sbjct: 630 MGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEG 666



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 161/337 (47%), Gaps = 15/337 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S + F+P L++      S+ +A A ++ M+   + G  P   +    I  +  SG +E A
Sbjct: 301 SAFTFNP-LITGYFARGSVEKAGALQLEME---NEGIVPTVVTYNTIIHGMFRSGNVEAA 356

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQ 207
              F +++ MG+   + T+NS + G C   +  + +W L+ DL  +G          L+ 
Sbjct: 357 RMKFVEMRAMGLLPDLITYNSLINGYCKAGNLKEALW-LFGDLKRAGLAPSVLTYNILLD 415

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G + E     ++++E G  P+ + +  L++   + +N   V E    M+++   P
Sbjct: 416 GYCRLGDLEEARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQP 475

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D F Y   I+         EA+++   +  RG   DTV Y   + GLCK G L DA  +W
Sbjct: 476 DCFAYNTRISAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLW 535

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  GL P+  TY  +IH +C    L EA+ +   ML  G   + VTY   I   C  
Sbjct: 536 MKMVSDGLQPDCITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRR 595

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G    AY  F++M ++G+  + +TYN LI   C+ G+
Sbjct: 596 GNLYSAYGWFQKMLEEGVRPNEVTYNVLIHALCRMGR 632



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 150/331 (45%), Gaps = 12/331 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL++ N L +   +A   K A+     L   G +P+  +  + +   C  G +EEA
Sbjct: 367 GLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEA 426

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND----- 212
                ++ E G    + T+   + G  K+    +V + + +++  G     F  +     
Sbjct: 427 RRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISA 486

Query: 213 ----GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G  SE ++L   ++  G+  +   +N  +   C+  N      L   MV+    PD
Sbjct: 487 ELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPD 546

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C+  +  EA  +F+ +   G  P  V YT  IH  C+ G L  A   + 
Sbjct: 547 CITYTCLIHAHCERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNLYSAYGWFQ 606

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G+ PNE TYN +IH  CR+     A +   EML++G      TY  LI G C  G
Sbjct: 607 KMLEEGVRPNEVTYNVLIHALCRMGRTNLAYQHFHEMLERGLSPNKYTYTLLIDGNCKEG 666

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             +EA  L+ EM Q GI  D  T+N L +G+
Sbjct: 667 NWEEAIRLYSEMHQHGIHPDHCTHNALFKGF 697



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 152/344 (44%), Gaps = 19/344 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLV-EAR--AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           +H+G  P +  CN++  +L  EAR    +     +   G  P+  +    +      G +
Sbjct: 188 AHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRV 247

Query: 155 EEAFCAFSKLKEM-----GVFGSIKTWNSALLGCIKIDRTD----LVWKLYHDLIESGY- 204
           ++A      L+EM     G   S  T+N  + G  +    +    LV ++      S + 
Sbjct: 248 DQAA---KLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFT 304

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI  +   G V +   L  ++  +G+VP    +N +I       N          M 
Sbjct: 305 FNPLITGYFARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMR 364

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A    PD  TY  +ING CK+    EA  +F DLK  G  P  + Y  ++ G C++G L 
Sbjct: 365 AMGLLPDLITYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLE 424

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +AR+   EM+ +G  P+  TY  +++G  ++ NL   +    EML KG       YNT I
Sbjct: 425 EARRFKQEMVEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRI 484

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +   + G T EA+ L E M  +GI  D +TYN  + G CK G +
Sbjct: 485 SAELILGSTSEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNL 528



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 162/370 (43%), Gaps = 24/370 (6%)

Query: 79  FLKQQNNVLLSIR-FFQW--LHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFL 129
           F+K+ N VL ++R   +W  + S Y      G  P +V+ N L DS         A   L
Sbjct: 195 FIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFFREGRVDQAAKLL 254

Query: 130 DST-----GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
                   G  P+  +  + I  L   G +E+A     +++ M    S  T+N  + G  
Sbjct: 255 REMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMR-MSKKASAFTFNPLITGYF 313

Query: 185 KIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
                +    L  ++   G          +I      G V        ++   GL+P+  
Sbjct: 314 ARGSVEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLI 373

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +N LI+ +C+  N      L   +     AP   TY  +++G C+     EA R   ++
Sbjct: 374 TYNSLINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEM 433

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            E+G  PD   YT +++G  K+  L   R+ + EM+ KGL P+ + YN+ I     + + 
Sbjct: 434 VEQGCQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGST 493

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA +L + M+ +G    TVTYN  + GLC  G   +AY L+ +M   G+  D ITY  L
Sbjct: 494 SEAFQLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCL 553

Query: 416 IQGYCKEGKI 425
           I  +C+ G++
Sbjct: 554 IHAHCERGRL 563



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 143/341 (41%), Gaps = 21/341 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD-------STGFSPNPNSLELYIQCLCESGL 153
           G  P  V+ NV+ + L      + A   +D       ++ F+ NP      I      G 
Sbjct: 263 GCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKASAFTFNP-----LITGYFARGS 317

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGC-----IKIDRTDLV----WKLYHDLIESGY 204
           +E+A     +++  G+  ++ T+N+ + G      ++  R   V      L  DLI    
Sbjct: 318 VEKAGALQLEMENEGIVPTVVTYNTIIHGMFRSGNVEAARMKFVEMRAMGLLPDLITYNS 377

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +C  G + E   L   +   GL P    +N L+  +C   +          MV + 
Sbjct: 378 LINGYCKAGNLKEALWLFGDLKRAGLAPSVLTYNILLDGYCRLGDLEEARRFKQEMVEQG 437

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  ++NG  K R        F+++  +G  PD   Y T I     +G   +A 
Sbjct: 438 CQPDVSTYTILMNGSRKVRNLAMVREFFDEMLSKGLQPDCFAYNTRISAELILGSTSEAF 497

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   MI +G+  +  TYN  + G C+  NL++A  L  +M+  G     +TY  LI   
Sbjct: 498 QLTEVMISRGISSDTVTYNIFLDGLCKSGNLKDAYVLWMKMVSDGLQPDCITYTCLIHAH 557

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR  EA  +F+ M   G+    +TY   I  YC+ G +
Sbjct: 558 CERGRLREARDIFDGMLVSGLPPSAVTYTVFIHAYCRRGNL 598



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            F ++   G  P       V+  L       D R ++ EM+  G+ P+  TYN+++  + 
Sbjct: 183 AFREMAHHGVPPFIKECNLVLRALRDEARWDDMRSVYAEMLQLGIEPSIVTYNTLLDSFF 242

Query: 351 RIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIAGLCLHGRTDEAYHLFE--EMAQKGIF 406
           R   +++A +L +EM  +  G   + VTYN +I GL   G  ++A  L +   M++K   
Sbjct: 243 REGRVDQAAKLLREMEARPGGCLPSDVTYNVVINGLARKGELEKAAQLVDRMRMSKKA-- 300

Query: 407 RDVITYNTLIQGYCKEGKI 425
               T+N LI GY   G +
Sbjct: 301 -SAFTFNPLITGYFARGSV 318


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 165/341 (48%), Gaps = 12/341 (3%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFD---SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLC 149
           F  L    G  P++V+ N +     S       ++  D +   G  P+  +   +I  +C
Sbjct: 213 FIGLMEALGIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMC 272

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           + G +EEA     K+KE+G+  +  T+N+ + G       ++ +     ++  G      
Sbjct: 273 KEGKLEEASGMLEKMKEIGLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVS 332

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI A   D K+ E   +++++ E GLVP++  +N LI+ +C   N  +   L   M
Sbjct: 333 TYNMLIHALFLDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEM 392

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +++   P   TY  +I  L K  +  +A  +F  +  +G  PD +M+  +I G C  G +
Sbjct: 393 ISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNM 452

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A  M  EM    ++P+E T+N+++ G CR   +E A+ L +EM  +G     ++YNTL
Sbjct: 453 DRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTL 512

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           I+G    G   +A+ + +EM   G    ++TYN LIQG CK
Sbjct: 513 ISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCK 553



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 158/363 (43%), Gaps = 79/363 (21%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-- 199
           +L I+  CE    ++AF  F  +K  GV   +   N  L   +K +RT+  W LY ++  
Sbjct: 125 DLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFR 184

Query: 200 --IESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             I+S       +I   C +GK+ +  E +  +   G+ P    +N +I  +C +     
Sbjct: 185 MRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVEG 244

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M  R   PD++TY   I+G+CK  K  EA  +   +KE G  P  V Y T+I 
Sbjct: 245 ARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLID 304

Query: 313 GLCKMGWL-----------------------------------GDARKMWFEMIHKGLLP 337
           G C  G L                                    +A  +  EM  KGL+P
Sbjct: 305 GYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLVP 364

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN +I+GYCR  N+++A  LH EM+ KG   T VTY +LI  L   GR  +A  LF
Sbjct: 365 DSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLF 424

Query: 398 EEMAQKGIFRDVI-----------------------------------TYNTLIQGYCKE 422
           E++ +KGIF D+I                                   T+NTL+QG C+E
Sbjct: 425 EKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCRE 484

Query: 423 GKI 425
           GK+
Sbjct: 485 GKV 487



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 132/296 (44%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V+ N L D        ++A D+ D     G  P  ++  + I  L     ++EA
Sbjct: 291 GLRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEA 350

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ E G+     T+N  + G  +       + L+ ++I  G          LI  
Sbjct: 351 DGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYV 410

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G++ +  +L  +++  G+ P+   FN LI   C   N  R   +L  M      PD
Sbjct: 411 LSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPD 470

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++ G C+  K   A  +  ++K RG  PD + Y T+I G  K G + DA ++  
Sbjct: 471 EVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRD 530

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           EM+  G  P   TYN++I G C+ +  + A++L KEM+ KG      TY +LI G+
Sbjct: 531 EMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 124/272 (45%), Gaps = 23/272 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-------GFSPNPNSLELYIQCLCESGL 153
           G  P + + N+L  +L         MD  D         G  P+  +  + I   C  G 
Sbjct: 326 GLMPTVSTYNMLIHALF----LDCKMDEADGIIKEMSEKGLVPDSVTYNILINGYCRCGN 381

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKL-----YHDLIESGY 204
           +++AF    ++   G+  +  T+ S +    K  R     DL  K+     + DLI    
Sbjct: 382 VKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKRGRMKQADDLFEKIVRKGIFPDLIMFNA 441

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C +G +   + +L+++ +  +VP+   FN L+   C +       EL+  M +R 
Sbjct: 442 LIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTLMQGRCREGKVEAARELIEEMKSRG 501

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+ +Y  +I+G  K     +A+RV +++   G+ P  + Y  +I GLCK      A 
Sbjct: 502 IKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAE 561

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           ++  EMI KG+ PN+ TY S+I G   I N+E
Sbjct: 562 QLLKEMISKGITPNDNTYLSLIEG---IGNVE 590



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 95/189 (50%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           ++ LI   CE K      E    M  +   P      ++++   KS +  +A+ ++ ++ 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                   V +  +I+ LCK G L  A++    M   G+ PN  TYN++IHGYC    +E
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A+ +   M  +G    + TY + I+G+C  G+ +EA  + E+M + G+    +TYNTLI
Sbjct: 244 GARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 417 QGYCKEGKI 425
            GYC +G +
Sbjct: 304 DGYCNKGNL 312



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 81/167 (48%), Gaps = 8/167 (4%)

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK-ERGY--VPDTVMYTTVIHGLCKMG 318
           A N  P     +E IN    S +      VFN+L   RG   +   V+Y  +I   C++ 
Sbjct: 81  APNSKPSLQLLKETINSGVYSIRE-----VFNELGVARGVLGIKTYVLYDLLIRACCELK 135

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              DA + +  M  KG++P+ +  N M+  + + +  E+A  L+ EM       + VT+N
Sbjct: 136 RGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFN 195

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +I  LC  G+  +A      M   GI  +V+TYNT+I GYC  G++
Sbjct: 196 IMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRV 242


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 171/350 (48%), Gaps = 18/350 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPN--SLELYIQ 146
           F + LH H    P +VS N L  S+++ + +   +     LDS G +P P+  +L ++I 
Sbjct: 43  FHRMLHLHP--PPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKG-TPKPSLVTLSIFIN 99

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            L   G +  AF   +K+ + G      T  + + G     RT     LY   +  G+  
Sbjct: 100 SLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAVSKGFSF 159

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI   C  GK  +  ELLR++ + G+ P    +N ++   C++        L 
Sbjct: 160 DEVCYGTLINGLCKMGKTRDAIELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLC 219

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCK 316
             MV +    D FTY  +I+G C + +   A R+ N++  +  V PD   +  ++  LCK
Sbjct: 220 SEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCK 279

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G + +AR ++  MI +GL P+  + N++++G+C    + EAK +   M+++G     ++
Sbjct: 280 LGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVIS 339

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           Y+TLI G C     DEA  L  EM Q+ +  D +TYN L+ G  K G+++
Sbjct: 340 YSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVL 389



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 173/370 (46%), Gaps = 21/370 (5%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAM 126
           DP      +K    + L  R F+ L+ +      GFS D V    L + L +    + A+
Sbjct: 125 DPFTLTTLMK---GLCLKGRTFEALNLYDHAVSKGFSFDEVCYGTLINGLCKMGKTRDAI 181

Query: 127 DFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
           + L   +  G  PN     + +  LC+ GL+ EA    S++   G+   + T+NS + G 
Sbjct: 182 ELLRKMEKGGVRPNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGF 241

Query: 184 IKIDRTDLVWKLYHDLIES----------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
               +     +L ++++              L+ A C  G V+E   +   +++ GL P+
Sbjct: 242 CGAGQFQGAVRLLNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPD 301

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             + N L++ +C +       E+   MV R + P+  +Y  +ING CK +   EA R+  
Sbjct: 302 VVSCNALMNGWCLRGCMSEAKEVFDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLT 361

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ +R  VPDTV Y  ++ GL K G +     +   M   G  P+  TYN ++  Y + +
Sbjct: 362 EMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRE 421

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            L++A  L + ++D G      TYN LI GLC  GR   A  +F+ ++ KG   ++ TYN
Sbjct: 422 CLDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYN 481

Query: 414 TLIQGYCKEG 423
            +I G  +EG
Sbjct: 482 IMINGLRREG 491


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + LF S+V    ++  +     ++  G   + +SL + I C C    ++     
Sbjct: 60  PCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILINCFCHLHRVDFGLSV 119

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            SK+ ++G+  SI T+ + L G     + D V  LY D++  G          +I +   
Sbjct: 120 LSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSK 179

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK +E    L+Q+ + G VP    ++ LI  +C +        +   MV++   P+ +T
Sbjct: 180 SGKANEALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYT 239

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NG CK  +  EA ++ ++   +G VPD V +TT+I GLC+ G    A++++  + 
Sbjct: 240 YTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYIC 299

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  PN  TY  ++ G C+  NLEEA  L +EM         V Y  LI  LC  G+  
Sbjct: 300 AHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIK 359

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +   LF  +  +G+  +V TY  L+   CKEG I+
Sbjct: 360 DGKELFSRLIDEGLKPNVYTYTALVGALCKEGLII 394



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 101 GFSPDLVSCNVLFDSL-VEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+   L + L +E +  +V M + D    G  PN  +  + I  L +SG   EA
Sbjct: 127 GLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLSKSGKANEA 186

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                +++++G   ++  +++ + G     + D    ++  ++  G          L+  
Sbjct: 187 LGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNG 246

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ E  +LL + L  GLVP+   F  +IS  C         +L   + A    P+
Sbjct: 247 YCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPN 306

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLCK     EA+ +F +++     P+ V+YT +I  LCK G + D ++++ 
Sbjct: 307 IMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFS 366

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +I +GL PN YTY +++   C+   + EA +L ++M + G       YN +I G   H 
Sbjct: 367 RLIDEGLKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHK 426

Query: 389 RTDEAYHLFEEMAQKGIFRDVIT 411
               A  L EEM  +G   D  T
Sbjct: 427 DPSMARQLVEEMVNRGFSADAAT 449



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 70/138 (50%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   F  +  R  +P  V ++ +   + +MG       +  E+   G+  + ++ + +I
Sbjct: 45  DALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILI 104

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C +  ++    +  ++L  G   + VT+ TL+ GLC+ G+ D+   L+++M  +G+ 
Sbjct: 105 NCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQ 164

Query: 407 RDVITYNTLIQGYCKEGK 424
            +V TYN +I    K GK
Sbjct: 165 PNVYTYNVIINSLSKSGK 182



 Score = 39.3 bits (90), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 47/104 (45%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA   +  M+ +  LP    ++ +     R+ + E    L KE+   G  +   + + LI
Sbjct: 45  DALASFRLMLLRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSILI 104

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C   R D    +  ++ + G+   ++T+ TL+ G C EGK+
Sbjct: 105 NCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKM 148


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 111/429 (25%), Positives = 191/429 (44%), Gaps = 51/429 (11%)

Query: 43   IAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWL-HSHYG 101
            I K+ CK T      E  +       N N+    R+ L  +++ + S+    +L   H  
Sbjct: 633  IVKESCKSTHNCSTSENHMKFQ----NLNNSGLCRQELSLESSEICSLVLDTYLRQPHLR 688

Query: 102  FSPDLVSCNVLFDSLVEARAFK------------VAMDFLD-STGFSPNPNSLELYIQC- 147
            FSP  ++ ++   SL   +A              VA+ F   + GF      + LYI C 
Sbjct: 689  FSPSKLNLDMDAASLTHEQAISAVALLASEEGSMVALSFFYWAVGFPKFRYFMRLYIVCT 748

Query: 148  ----------------------LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
                                    E G ++EA      ++  G+  + +  N  +L   +
Sbjct: 749  MSLVGKCNLERAHEVVECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAE 808

Query: 186  IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
            +   +    ++ ++   G         Y+I  +C +G V E    + +++E G V +N  
Sbjct: 809  MRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNAT 868

Query: 237  FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
               +I+ FCEK    R     H +     +P+   Y  +I+GLCK     +A+ +  ++ 
Sbjct: 869  LTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMV 928

Query: 297  ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNL 355
            + G+ P+   +T++IHGLCK GW   A +++ ++I      PN +TY +MI GYC+ + L
Sbjct: 929  KNGWKPNVYTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKL 988

Query: 356  EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
              A+ L + M ++G    T TY TLI G C  G   +AY L E M+ +G F +  TYN++
Sbjct: 989  SRAEMLFERMKEQGLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSI 1048

Query: 416  IQGYCKEGK 424
            + G CK G+
Sbjct: 1049 VDGLCKRGR 1057



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 164/346 (47%), Gaps = 14/346 (4%)

Query: 89   SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
            ++ FF  + +  G SP+L++ + +   L +  + K A + L+     G+ PN  +    I
Sbjct: 885  AVWFFHKV-TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLI 943

Query: 146  QCLCESGLIEEAFCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
              LC+ G  E AF  F KL     +  ++ T+ + + G  K ++      L+  + E G 
Sbjct: 944  HGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 1003

Query: 205  ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                     LI   C  G  S+ YEL+  +  +G  P    +N ++   C++       +
Sbjct: 1004 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFK 1063

Query: 256  LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
            LL+T        D  TY  +I+  CK     +A    N + + G+ PD  +YTT+I   C
Sbjct: 1064 LLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFC 1123

Query: 316  KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            +   + D+ K++ E+I  GL P + TY SMI GYCR   +  A +  ++M D G    ++
Sbjct: 1124 RQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSI 1183

Query: 376  TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +Y  LI+GLC   R DEA  L++ M  KG+    +T  TL   YCK
Sbjct: 1184 SYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCK 1229



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H+++E   ++  F   GK+ E  +++  +   GLV      N++I    E +       +
Sbjct: 761 HEVVEC--MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNV 818

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M AR   PD+ TY+ +I G C++   LEA R   ++ ERG+V D    T +I   C+
Sbjct: 819 FDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCE 878

Query: 317 MGWLGDARKMWF--EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
              +   R +WF  ++   GL PN   Y+SMI G C+  ++++A  L +EM+  G+    
Sbjct: 879 KSLVN--RAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNV 936

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
            T+ +LI GLC  G T+ A+ LF ++ +   ++ +V TY  +I GYCKE K+
Sbjct: 937 YTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKL 988



 Score = 45.8 bits (107), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+  +  I  L+EA  +  +M ++G   TT   N +I         + A ++F+EM+ +G
Sbjct: 767 MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARG 826

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           ++ D  TY  +I GYC+ G ++
Sbjct: 827 VYPDSCTYKYIIVGYCRNGNVL 848


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/383 (26%), Positives = 176/383 (45%), Gaps = 51/383 (13%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFS---PNPNSL 141
           ++  F  + + +     + S N + + +++   F +A++F    +DS  FS   PN  S 
Sbjct: 119 ALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSF 178

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            L I+ LC  G +++A   F  + +        T+++ + G     R D    L  ++  
Sbjct: 179 NLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQV 238

Query: 202 SG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          LI A C  G +S   +L+  +   G VP    +N L+   C K    +
Sbjct: 239 EGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDK 298

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY------------ 300
              LL+ MVA    P++ T+  +++G  K  + L+  RV   L+E+GY            
Sbjct: 299 AMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLIS 358

Query: 301 -----------------------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                                   P+T++Y+ +I GLC+ G   +A++   EM +KG  P
Sbjct: 359 GLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTP 418

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N +TY+S++ GY    ++ +A  + KEM D       V Y+ LI GLC +G+  EA  ++
Sbjct: 419 NSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVW 478

Query: 398 EEMAQKGIFRDVITYNTLIQGYC 420
           ++M  +GI  DV+ Y+++I G+C
Sbjct: 479 KQMLSRGIKLDVVAYSSMIHGFC 501



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 95/194 (48%)

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           NT  N +I   C        + ++ +    N  P+  ++  VI  LC+     +A  VF 
Sbjct: 140 NTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFR 199

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            + +R  V D   Y+T++HGLC  G + +A  +  EM  +G  PN   +N +I   C+  
Sbjct: 200 GMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKG 259

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +L  A +L   M  KG     VTYN+L+ GLCL G+ D+A  L   M       + IT+ 
Sbjct: 260 DLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFG 319

Query: 414 TLIQGYCKEGKIVN 427
           TL+ G+ K G+ ++
Sbjct: 320 TLVDGFVKHGRALD 333



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/395 (22%), Positives = 155/395 (39%), Gaps = 70/395 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ NVL  +L +      A   +D+    G  PN  +    +  LC  G +++A
Sbjct: 240 GTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKA 299

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++       +  T+ + + G +K  R     ++   L E GY         LI  
Sbjct: 300 MSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLISG 359

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK   G +L ++++E G  P    ++ LI   C +       E L  M  +   P+
Sbjct: 360 LFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTPN 419

Query: 269 NFTYEEV-----------------------------------INGLCKSRKRLEAYRVFN 293
           +FTY  +                                   INGLCK+ K  EA  V+ 
Sbjct: 420 SFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKLKEALIVWK 479

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI--HKGLLPNEYTYNSMIHGYCR 351
            +  RG   D V Y+++IHG C    +    K++ +M+  +  L P+  TYN +++ +C 
Sbjct: 480 QMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQPDVVTYNILLNAFCT 539

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVT---------------------YNTLIAGLCLHGRT 390
            +++  A  +   MLD+G     +T                      + L+  L    RT
Sbjct: 540 KNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREFLDELVVRLIKRQRT 599

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             A ++ E M QK +     T+   +Q  CK  K+
Sbjct: 600 VGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMKV 634



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 5/195 (2%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           +F  LI  F    +F  + +LLH M   NR     ++  +     K+    +A  +F+ +
Sbjct: 67  SFYSLIENFSNSLDFTSLEQLLHQMKCENRVFIEKSFIIMFKAYGKAHLPQKALDLFHRM 126

Query: 296 KERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFEMIH----KGLLPNEYTYNSMIHGYC 350
               +   TV  + TV++ + + G    A + +  +I       + PN  ++N +I   C
Sbjct: 127 GAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNHVIDSNSFSNIQPNGLSFNLVIKALC 186

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R+ N+++A  + + M D+       TY+TL+ GLC  GR DEA  L +EM  +G F + +
Sbjct: 187 RVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPNPV 246

Query: 411 TYNTLIQGYCKEGKI 425
            +N LI   CK+G +
Sbjct: 247 AFNVLISALCKKGDL 261


>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Cucumis sativus]
          Length = 657

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 158/310 (50%), Gaps = 8/310 (2%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           R+  V ++ +  +G  PN  +  + I   C++G IE+AF  +S++K  G+  S+ + NS 
Sbjct: 162 RSALVLVNEISESGLVPNKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSI 221

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
           L G +K       + +++D +ESG         L+   C +GK++E   L  +V+  G+ 
Sbjct: 222 LEGYLKCQSWQNAFTMFNDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGIS 281

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P   ++N +I   C K N     ++   M+     P+  T+  +++G  K      A+ +
Sbjct: 282 PNVVSYNNIILGHCRKDNINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIENAFSI 341

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F+ +K+   +P       +I GLCK G   + R ++ + + +G +P    YN++I G+ +
Sbjct: 342 FHRMKDANILPTDTTLGIIIKGLCKAGRSFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIK 401

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             N+  A  +++EM + G   +TVTY +LI G C     D A  L  +M +KG+  D+  
Sbjct: 402 EGNINLASNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKA 461

Query: 412 YNTLIQGYCK 421
           Y TLI G+CK
Sbjct: 462 YGTLIDGFCK 471



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/333 (30%), Positives = 153/333 (45%), Gaps = 35/333 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEAR------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G SP++VS N +   L   R      A KV  + LD+ GF+PN  +  + +    + G I
Sbjct: 279 GISPNVVSYNNII--LGHCRKDNINAACKVYKEMLDN-GFTPNAVTFTILMDGYFKKGDI 335

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           E AF  F ++K+  +  +  T                           G +I+  C  G+
Sbjct: 336 ENAFSIFHRMKDANILPTDTTL--------------------------GIIIKGLCKAGR 369

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
             EG +L  + +  G VP    +N +I  F ++ N    S +   M      P   TY  
Sbjct: 370 SFEGRDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTS 429

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G CK      A ++ ND+K +G   D   Y T+I G CK   +  A ++  E+   G
Sbjct: 430 LIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAG 489

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L PN + YNSMI G+  ++N+EEA  L+K+M+++G      TY +LI GL   GR   A 
Sbjct: 490 LSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYAS 549

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +  EM  KGI  D   +  LI G C +G+  N
Sbjct: 550 DIHTEMLSKGILPDDRAHTVLINGLCNKGQFEN 582



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 153/330 (46%), Gaps = 12/330 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P+ V+  +L D   +    + A      +      P   +L + I+ LC++G   E 
Sbjct: 314 GFTPNAVTFTILMDGYFKKGDIENAFSIFHRMKDANILPTDTTLGIIIKGLCKAGRSFEG 373

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+K    G   +   +N+ + G IK    +L   +Y ++ E G          LI  
Sbjct: 374 RDLFNKFVSQGFVPTCMPYNTIIDGFIKEGNINLASNVYREMCEVGITPSTVTYTSLIDG 433

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +    +LL  +   GL  +  A+  LI  FC++++     ELL+ +     +P+
Sbjct: 434 FCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDGFCKRRDMKSAHELLNELRGAGLSPN 493

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F Y  +I G        EA  ++  +   G   D   YT++I GL K G L  A  +  
Sbjct: 494 RFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCDLKTYTSLIDGLLKSGRLLYASDIHT 553

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG+LP++  +  +I+G C     E A+++ ++M  K    + + YNTLIAG    G
Sbjct: 554 EMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEG 613

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
              EA+ L +EM  +G+  D ITY+ L+ G
Sbjct: 614 NLQEAFRLHDEMLDRGLVPDNITYDILVNG 643



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 131/297 (44%), Gaps = 43/297 (14%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELL 222
           SI+  N  L   ++ + T    +L++ ++  G          +++A   +G + E  +  
Sbjct: 4   SIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLKEGNILEAEQHF 63

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            Q    G+  +  A++  +   C K N G    LL  M A    P   T+  VI    K 
Sbjct: 64  LQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVITACVKE 123

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               EA R+ +D+   G   +  + T+++ G C  G L  A  +  E+   GL+PN+ TY
Sbjct: 124 GNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVPNKVTY 183

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGET----------------------------- 373
           + +I G C+  N+E+A   + EM  KG   +                             
Sbjct: 184 SVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMFNDALE 243

Query: 374 -----TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                  T+NTL++ LC  G+ +EA +L++E+  KGI  +V++YN +I G+C++  I
Sbjct: 244 SGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKDNI 300



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 138/339 (40%), Gaps = 47/339 (13%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            +P+   + + +  +    +  EA    +K+  +GV G   T +  L  C+K    +++ 
Sbjct: 1   MTPSIQCMNILLTAMVRKNMTCEARELHNKMLLVGVTGDCFTLHVMLRACLK--EGNILE 58

Query: 194 KLYH---------DLIESGYLIQAFCNDGKVSEGY--ELLRQVLEDGLVPENTAFNKLIS 242
              H         +L +  Y I       K + GY   LLR++   G +P    F  +I+
Sbjct: 59  AEQHFLQAKARGVELDQEAYSIFVHLLCLKPNSGYALSLLREMRAAGWIPPEGTFTSVIT 118

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
              ++ N      L   MV   ++ +      ++ G C       A  + N++ E G VP
Sbjct: 119 ACVKEGNVAEALRLKDDMVNCGKSMNLAVATSLMKGYCMQGNLRSALVLVNEISESGLVP 178

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY------------- 349
           + V Y+ +I G CK G +  A + + EM  KG+  + Y+ NS++ GY             
Sbjct: 179 NKVTYSVLIDGCCKNGNIEKAFEFYSEMKTKGIRSSVYSLNSILEGYLKCQSWQNAFTMF 238

Query: 350 ---------------------CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
                                C+   + EA  L  E++ KG     V+YN +I G C   
Sbjct: 239 NDALESGLANVFTFNTLLSWLCKEGKMNEACNLWDEVIAKGISPNVVSYNNIILGHCRKD 298

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             + A  +++EM   G   + +T+  L+ GY K+G I N
Sbjct: 299 NINAACKVYKEMLDNGFTPNAVTFTILMDGYFKKGDIEN 337


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/347 (28%), Positives = 162/347 (46%), Gaps = 13/347 (3%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCLC 149
           + Q L +  G +P+    NVL    V       A    D    S  P   +    I  +C
Sbjct: 174 YLQLLDA--GMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMC 231

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
            +  ++     + ++ ++GV   + T+ + + G  +  R +   K+++++ ++G      
Sbjct: 232 RARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNPNAV 291

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI A C +G V+ G +L + +   G++P+  A+N L++  C  +N      ++  M
Sbjct: 292 VFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIVEEM 351

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
                 PD  TY  +I+G CK  K   A  +   + E+    D V YT +I GL K G  
Sbjct: 352 KNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKAGRP 411

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            DA ++  EM+   L P+  TY  +I  +CR  +++   +L KEM +KG     VTYN +
Sbjct: 412 VDAERVLREMMEAALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVI 471

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + GLC  G+   A  L   M   G+  D ITYN L+ G CK GK+ N
Sbjct: 472 MNGLCKLGQMKNADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVAN 518



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/245 (29%), Positives = 118/245 (48%), Gaps = 34/245 (13%)

Query: 217 EGYELLRQVLEDGLVPEN----------------------------------TAFNKLIS 242
           E Y    Q+L+ G+ PE                                     FN LIS
Sbjct: 169 EAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLIS 228

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C  ++   V  L   M      PD +TY  +I G C++ +   A ++FN++++ G  P
Sbjct: 229 GMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGFCRTGRMENAVKMFNEMRDTGVNP 288

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + V++TT+I   CK G +     ++ +M  +G++P+   YN++++G CR  NL+ A+ + 
Sbjct: 289 NAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDLVAYNALVNGLCRARNLKAAESIV 348

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +EM + G     VTY TLI G C  G+ D A  + ++MA+K +  D +TY  LI G  K 
Sbjct: 349 EEMKNAGLKPDKVTYTTLIDGCCKDGKLDMAMDIKQKMAEKEVSLDEVTYTALISGLSKA 408

Query: 423 GKIVN 427
           G+ V+
Sbjct: 409 GRPVD 413



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 39/145 (26%)

Query: 318 GWLGDARKMWFEMIHKGL-LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY------ 370
           G L DA  +    + +G+ LP       M     R+ +  EA   + ++LD G       
Sbjct: 133 GLLPDACSLVLLALRRGISLPAPVCSGLM----SRLPSTPEAYTFYLQLLDAGMAPETRL 188

Query: 371 -----------GE-----------------TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
                      GE                 T VT+NTLI+G+C     D    L++EM+ 
Sbjct: 189 FNVLMRDFVRLGELVSARKVFDEMRRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSD 248

Query: 403 KGIFRDVITYNTLIQGYCKEGKIVN 427
            G+  DV TY  LI+G+C+ G++ N
Sbjct: 249 VGVKPDVYTYGALIKGFCRTGRMEN 273



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
               P+  +  + I   C  G ++  F    +++  G    + T+N  + G  K+ +   
Sbjct: 424 AALEPDNTTYTMVIDAFCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKN 483

Query: 192 VWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
              L H ++  G          L+   C  GKV+   EL       G+VP+   +  LIS
Sbjct: 484 ADMLLHAMLNIGVSPDDITYNILLDGQCKHGKVANSEELESS---KGMVPDFAVYTSLIS 540

Query: 243 RFCEKK 248
              +KK
Sbjct: 541 ELAKKK 546


>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
          Length = 569

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 110/377 (29%), Positives = 177/377 (46%), Gaps = 53/377 (14%)

Query: 101 GFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +P +V+ N + ++      +VEAR      D L   GFSPN       +    +   I
Sbjct: 121 GCNPTVVTFNTVINAFCKEGNVVEARKL---FDGLKEMGFSPNAIMYNTLMNGYVKMREI 177

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------- 205
           ++A   + ++++ G+     T+N  + G  K  R +   +L  D+   G L         
Sbjct: 178 DQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDIS 237

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC----EKKNF----------- 250
           +   C  G++ E  E L  +LE GL P   AFN +I+ +     E K F           
Sbjct: 238 VSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGL 297

Query: 251 -----------------GRV---SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                            GR+   +EL+  M+ +  + +N  +  +++   K    + A  
Sbjct: 298 TPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQS 357

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           ++ +++ RG  PD V ++  I GL K G + +A  ++ EM+ KGL+PN + YNS+I G+C
Sbjct: 358 LWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFC 417

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   L EA +L K M  +G      T N +I GLC  GR   A ++F +M Q G+  D+I
Sbjct: 418 KCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDII 477

Query: 411 TYNTLIQGYCKEGKIVN 427
           TYNTLI GYCK   +VN
Sbjct: 478 TYNTLINGYCKAFDMVN 494



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 156/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +PD ++ N+L         E    ++  D +   G  P+ +  ++ +  LC +G ++E
Sbjct: 191 GIAPDGITFNILVSGHYKYGREEDGDRLLKD-ISVLGLLPDRSLFDISVSGLCWAGRLDE 249

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A      + E G+  SI  +NS +    +    D  ++ Y  ++  G          L+ 
Sbjct: 250 AMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPSTCSSLLM 309

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               +G++ E  EL+ Q++E GL   N AF  L+ +F ++ +      L   M  R   P
Sbjct: 310 GLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVVGAQSLWGEMERRGIFP 369

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   +   I+GL K     EAY VF ++  +G +P+   Y ++I G CK G L +A K+ 
Sbjct: 370 DVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGLIPNNFAYNSLICGFCKCGKLNEALKLE 429

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M H+GLLP+ +T N +I G C+   +  A  +  +M   G     +TYNTLI G C  
Sbjct: 430 KVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKA 489

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                A +L   M   G   D+ TYN  I G+C   ++
Sbjct: 490 FDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRM 527



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 138/280 (49%), Gaps = 15/280 (5%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A     +++E+GV  S           +++     VWKL+ D+I  G          +I
Sbjct: 4   QALEILGRMREVGVRPSASGVAILFKLLLRVGDYGNVWKLFKDVIRRGPQPCKYTFSGII 63

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVAR 263
             FC  G +  G  LL  + +    P   A+N +I+  C +   GR S+ L   + M+ R
Sbjct: 64  LGFCRKGCIHLGESLLHLMPKFHCEPNAFAYNIVINACCIR---GRTSDALAWFNLMIER 120

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P   T+  VIN  CK    +EA ++F+ LKE G+ P+ +MY T+++G  KM  +  A
Sbjct: 121 GCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQA 180

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ EM  KG+ P+  T+N ++ G+ +    E+  RL K++   G       ++  ++G
Sbjct: 181 NMLYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSG 240

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           LC  GR DEA     +M +KG+   +I +N++I  Y + G
Sbjct: 241 LCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAG 280



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 139/321 (43%), Gaps = 12/321 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G  PD    ++    L  A     AM+FL      G SP+  +    I    ++GL 
Sbjct: 223 SVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLE 282

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           ++AF A+  +   G+  S  T +S L+G     R     +L   +IE G          L
Sbjct: 283 DKAFEAYKLMVHFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVL 342

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +  F   G V     L  ++   G+ P+  AF+  I    ++        +   M+ +  
Sbjct: 343 LDKFFKRGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEMLRKGL 402

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+NF Y  +I G CK  K  EA ++   ++ RG +PD      +I GLCK G +  A  
Sbjct: 403 IPNNFAYNSLICGFCKCGKLNEALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAIN 462

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ +M   GL P+  TYN++I+GYC+  ++  A  L   M   G      TYN  I G C
Sbjct: 463 VFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFC 522

Query: 386 LHGRTDEAYHLFEEMAQKGIF 406
              R + A  + +E+   GI 
Sbjct: 523 SSRRMNRAVLMLDELVSAGIL 543



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/213 (29%), Positives = 109/213 (51%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G     ++L + V+  G  P    F+ +I  FC K        LLH M   +  P+ F Y
Sbjct: 35  GDYGNVWKLFKDVIRRGPQPCKYTFSGIILGFCRKGCIHLGESLLHLMPKFHCEPNAFAY 94

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             VIN  C   +  +A   FN + ERG  P  V + TVI+  CK G + +ARK++  +  
Sbjct: 95  NIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNTVINAFCKEGNVVEARKLFDGLKE 154

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G  PN   YN++++GY ++  +++A  L++EM  KG     +T+N L++G   +GR ++
Sbjct: 155 MGFSPNAIMYNTLMNGYVKMREIDQANMLYEEMRKKGIAPDGITFNILVSGHYKYGREED 214

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              L ++++  G+  D   ++  + G C  G++
Sbjct: 215 GDRLLKDISVLGLLPDRSLFDISVSGLCWAGRL 247



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 72/291 (24%), Positives = 133/291 (45%), Gaps = 26/291 (8%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I   C  G   +A   F+ + E G   ++ T+N+                 
Sbjct: 89  PNAFAYNIVINACCIRGRTSDALAWFNLMIERGCNPTVVTFNT----------------- 131

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    +I AFC +G V E  +L   + E G  P    +N L++ + + +   + + 
Sbjct: 132 ---------VINAFCKEGNVVEARKLFDGLKEMGFSPNAIMYNTLMNGYVKMREIDQANM 182

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M  +  APD  T+  +++G  K  +  +  R+  D+   G +PD  ++   + GLC
Sbjct: 183 LYEEMRKKGIAPDGITFNILVSGHYKYGREEDGDRLLKDISVLGLLPDRSLFDISVSGLC 242

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G L +A +   +M+ KGL P+   +NS+I  Y +    ++A   +K M+  G   +  
Sbjct: 243 WAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYSQAGLEDKAFEAYKLMVHFGLTPSPS 302

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           T ++L+ GL ++GR  EA  L  +M +KG+  + + +  L+  + K G +V
Sbjct: 303 TCSSLLMGLSINGRLQEATELIGQMIEKGLSVNNMAFTVLLDKFFKRGDVV 353



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 14/194 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+V+ +   D L +      A+ V ++ L   G  PN  +    I   C+ G + E
Sbjct: 366 GIFPDVVAFSAFIDGLSKQGLVEEAYNVFLEML-RKGLIPNNFAYNSLICGFCKCGKLNE 424

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A      ++  G+   I T N  + G  K  R      ++ D+ ++G          LI 
Sbjct: 425 ALKLEKVMRHRGLLPDIFTTNMIIGGLCKQGRMRSAINVFMDMHQTGLSPDIITYNTLIN 484

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C    +     L+ ++   G  P+ T +N  I  FC  +   R   +L  +V+     
Sbjct: 485 GYCKAFDMVNADNLVNRMYASGSNPDLTTYNIRIHGFCSSRRMNRAVLMLDELVSAGILS 544

Query: 268 DNFTYEEVINGLCK 281
            +F     +N   K
Sbjct: 545 FSFACPPTLNAHTK 558


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 157/339 (46%), Gaps = 27/339 (7%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
             LH   GF       N +F +L+E   F            + NP   +L I+      +
Sbjct: 83  HMLHMDVGF-------NNVFGALMETYPF-----------CNSNPAVFDLLIRVCLRENM 124

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GY 204
           + +A  AF  +   G   S+ T N  L   +K    DL W  + ++I +           
Sbjct: 125 VGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNI 184

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A C  GK      LLR++ E G  P    +N L++ +C+K  +   SEL+  M ++ 
Sbjct: 185 LLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMASKG 244

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            A D  TY  +I+ LC+  +  + Y +   +++    P+ + Y T+I+GL K G +G A 
Sbjct: 245 IAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGLVKEGKIGVAT 304

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++ EM    LLPN  TYN++I G+C   N+EEA RL   M+  G     VTY  L+ G+
Sbjct: 305 KVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTYGALLNGI 364

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             H +      + E M   G+    I+Y T+I G CK G
Sbjct: 365 SKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNG 403



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 146/337 (43%), Gaps = 14/337 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAM----DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            SP+      L D L++    K A+    D L+  G  P+  +  + +      G + + 
Sbjct: 650 LSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNE-GVQPDAIAFNVLLDRYSRKGKMSKV 708

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               S ++   +  ++ T+N  L G  K        KLY+++I  G+         LI  
Sbjct: 709 NDILSTMRSRSLCFNLATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILG 768

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G +    + LR++  +G   +    N L+S+ CE+       +L+  +      P+
Sbjct: 769 YCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPN 828

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  + NG  ++    EA  + + L E GY P    +TT+I G+C+MG +  A ++  
Sbjct: 829 VDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQD 888

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G+       +++I G  R    +EA R+   ML+     T  T+ TL+   C  G
Sbjct: 889 EMKILGVSSQGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEG 948

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A  L   M Q  +  DV  YN LI G C +G I
Sbjct: 949 NVAKALELRSVMEQCHVKLDVAAYNVLISGLCADGDI 985



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 89/194 (45%), Gaps = 1/194 (0%)

Query: 233 ENTAFNKLISRFCEKKNF-GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            N A   L+ R C ++N  G   E    M  R  +P  FT   V+  L K R+    +  
Sbjct: 107 SNPAVFDLLIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSF 166

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F ++      P+   +  +++ LC+ G    A  +  +M   G  P   TYN++++ YC+
Sbjct: 167 FKEMIANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCK 226

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               + A  L   M  KG      TYN LI  LC   R+ + Y +   M +  ++ + IT
Sbjct: 227 KGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEIT 286

Query: 412 YNTLIQGYCKEGKI 425
           YNTLI G  KEGKI
Sbjct: 287 YNTLINGLVKEGKI 300



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 98/221 (44%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI+    +  V +  E  R +   G  P     N ++    + +           M+A  
Sbjct: 115 LIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANR 174

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P+  T+  ++N LC+  K   A  +   + E G+ P  V Y T+++  CK G    A 
Sbjct: 175 VSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAAS 234

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M  KG+  +  TYN +I   CR     +   + + M         +TYNTLI GL
Sbjct: 235 ELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEITYNTLINGL 294

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G+   A  +FEEM+   +  + +TYNTLI G+C  G I
Sbjct: 295 VKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNI 335



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 142/353 (40%), Gaps = 52/353 (14%)

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           L EA  F   +D +   G +P+  + +  I     SG   +AF  F K+  +G   S  T
Sbjct: 494 LEEAEYF---VDHMSRMGLAPSSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFT 550

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGYLI-QAFCN--------DGKVSEGYELLRQVL 226
           +   L G +     +      H      Y I   F N         G +S    LL +++
Sbjct: 551 YEGLLKGLLIGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMV 610

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGLCKSR 283
            +  VP++  +  LI+  C K     V  LL +  A  +   +P+   Y  +++GL K  
Sbjct: 611 MNNFVPDSFTYTSLIAGLCRKGKM--VPALLLSGRAIEKGLLSPNPAMYTSLVDGLLKEG 668

Query: 284 KRLEAYRVFNDLKERGYVPDTVM-----------------------------------YT 308
               A  +F D+   G  PD +                                    Y 
Sbjct: 669 HSKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYN 728

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            ++HG  K   +    K++ EMI  G  P+  T++S+I GYC+  +L+ A +  +++  +
Sbjct: 729 ILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVE 788

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G+     T N L++ LC       A+ L +++   G+  +V TYN+L  G+ +
Sbjct: 789 GFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVR 841



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 137/354 (38%), Gaps = 31/354 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEAFCA 160
           P+ ++ N L + LV+     VA    +        PN  +    I   C +G IEEA   
Sbjct: 282 PNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRL 341

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW----KLYHDLIESGY-----LIQAFCN 211
              +   G+  +  T+ + L G  K  +  LV     ++  D +  G+     +I   C 
Sbjct: 342 CDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCK 401

Query: 212 DGKVSEGYELLRQVLE-------------------DGLVPENTAFNKLISRFCEKKNFGR 252
           +G + E  +LL  +L+                    GLVP     + LI  +C+  N   
Sbjct: 402 NGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKE 461

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
                  M       D+FT   ++   C+  +  EA    + +   G  P +V +  +I 
Sbjct: 462 ALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIID 521

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
                G    A  ++ +M   G LP+++TY  ++ G     ++ EAK          Y  
Sbjct: 522 TYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMHRPSSIPYAI 581

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +  YNT++      G    A  L +EM       D  TY +LI G C++GK+V
Sbjct: 582 GSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMV 635


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 172/336 (51%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDLV+  V+ + L +     +A + L+        P        I  LC+   +++A
Sbjct: 11  GCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDA 70

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 71  LNLFKEMETKGIRPNVVTY-SSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 129

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK+ E  +L  ++++  + P    ++ LI+ FC         ++   MV+++  P
Sbjct: 130 AFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFP 189

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I G CK ++  E   VF ++ +RG V +TV Y  +I GL + G    A++++
Sbjct: 190 DVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIF 249

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G+ PN  TYN+++ G C+   LE+A  + + +       T  TYN +I G+C  
Sbjct: 250 KEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKA 309

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+ ++ + LF  ++ KG+  DV+ YNT+I G+C++G
Sbjct: 310 GKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKG 345



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 136/260 (52%), Gaps = 9/260 (3%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDL----IESGYLI-----QAFCNDGKVSEGYELLRQV 225
           T+   + G  K   TDL + L + +    +E G LI        C    + +   L +++
Sbjct: 18  TYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEM 77

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
              G+ P    ++ LIS  C    +   S LL  M+ R   PD FT+  +I+   K  K 
Sbjct: 78  ETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKL 137

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
           +EA ++++++ +R   P  V Y+++I+G C    L +A++M+  M+ K   P+  TYN++
Sbjct: 138 VEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I G+C+   +EE   + +EM  +G    TVTYN LI GL   G  D A  +F+EM   G+
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             +++TYNTL+ G CK GK+
Sbjct: 258 PPNIMTYNTLLDGLCKNGKL 277



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D + + G  P+  +  + +  LC+ G  + AF   +K+++  +   +  +N+ + G  K
Sbjct: 4   IDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCK 63

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
               D    L+ ++   G          LI   CN G+ S+   LL  ++E  + P+   
Sbjct: 64  YKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFT 123

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           F+ LI  F ++       +L   MV R+  P   TY  +ING C   +  EA ++F  + 
Sbjct: 124 FSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMV 183

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +   PD V Y T+I G CK   + +  +++ EM  +GL+ N  TYN +I G  +  + +
Sbjct: 184 SKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCD 243

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A+ + KEM+  G     +TYNTL+ GLC +G+ ++A  +FE + +  +   + TYN +I
Sbjct: 244 MAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMI 303

Query: 417 QGYCKEGKI 425
           +G CK GK+
Sbjct: 304 EGMCKAGKV 312



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 65/205 (31%), Positives = 119/205 (58%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ +++  G  P+   +  +++  C++ +      LL+ M      P    Y  +I+GLC
Sbjct: 3   LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 62

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K +   +A  +F +++ +G  P+ V Y+++I  LC  G   DA ++  +MI + + P+ +
Sbjct: 63  KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 122

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T++++I  + +   L EA++L+ EM+ +    + VTY++LI G C+H R DEA  +FE M
Sbjct: 123 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 182

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
             K  F DV+TYNTLI+G+CK  ++
Sbjct: 183 VSKHCFPDVVTYNTLIKGFCKYKRV 207



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 162/350 (46%), Gaps = 16/350 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELY 144
           ++  F+ + +  G  P++V+ + L   L      + A ++  D ++    +P+  +    
Sbjct: 70  ALNLFKEMETK-GIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK-INPDVFTFSAL 127

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------- 197
           I    + G + EA   + ++ +  +  SI T++S + G    DR D   +++        
Sbjct: 128 IDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 187

Query: 198 --DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D++    LI+ FC   +V EG E+ R++ + GLV     +N LI    +  +     E
Sbjct: 188 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 247

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   MV+    P+  TY  +++GLCK+ K  +A  VF  L+     P    Y  +I G+C
Sbjct: 248 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMC 307

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + D   ++  +  KG+ P+   YN+MI G+CR  + EEA  L KEM + G    + 
Sbjct: 308 KAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSG 367

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            YNTLI      G  + +  L +EM   G   D  T   L+     +G++
Sbjct: 368 CYNTLIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRL 416



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/129 (38%), Positives = 74/129 (57%)

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +G  PD V Y  V++GLCK G    A  +  +M    L P    YN++I G C+  ++++
Sbjct: 10  KGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDD 69

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L KEM  KG     VTY++LI+ LC +GR  +A  L  +M ++ I  DV T++ LI 
Sbjct: 70  ALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALID 129

Query: 418 GYCKEGKIV 426
            + KEGK+V
Sbjct: 130 AFVKEGKLV 138


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +  + T    L   +K+    LVW  Y +++E GY
Sbjct: 71  ITAYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 130

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+Q FC +G +     +L  + + GL P   +FN LI+ +    +      
Sbjct: 131 PASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFR 190

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 191 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHC 250

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+   L++A  L  EM  +G     +
Sbjct: 251 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKI 310

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 311 TYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVD 362



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 87/192 (45%), Gaps = 10/192 (5%)

Query: 240 LISRFCEKKNFGRVSELLHTMVAR--NRAPDNFTYEEVINGLCKS---RKRLEAYRVFND 294
           LI     +K  G  S +   ++     +  D + +  +I    +S   R  +E YR+  +
Sbjct: 33  LIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLITAYLESGFLRDAIECYRLTRE 92

Query: 295 LKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
              + +VP DT     V+  L K+ +       + E++  G   + Y +N ++  +C+  
Sbjct: 93  --HKFWVPLDTC--RKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMQRFCKEG 148

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++  A+ +   +   G   + V++NTLI G    G  DE + L   M   G+  DV TY+
Sbjct: 149 DIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYS 208

Query: 414 TLIQGYCKEGKI 425
            LI G CKE K+
Sbjct: 209 VLINGLCKESKM 220


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K   A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                L  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  ++   C  G   +   
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHAPSVVTYNVLMNG 431


>gi|125524465|gb|EAY72579.1| hypothetical protein OsI_00445 [Oryza sativa Indica Group]
          Length = 1014

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 155/325 (47%), Gaps = 29/325 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N L D L +   F  A      +   G  PN  +  + I  LC+ G+IE+A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
            C F K+++ G+  ++  +NS                          LI  +C  G +  
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNS--------------------------LINGYCKQGSLDR 426

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LL  ++++GL P   +++ LI+  C   +     EL   M  R  A +N+T+  +IN
Sbjct: 427 ARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSAMELHREMAERGIAWNNYTFTALIN 486

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK +K  EA R+F+ + +   +P+ V +  +I G C +G +  A +++ +M+  GL P
Sbjct: 487 GFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKP 546

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + YTY S+I G C    + +A     ++ +        +   L+ GL   GR  E YHL+
Sbjct: 547 DNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTETYHLW 606

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           +EMA +G+  D++++  ++    K+
Sbjct: 607 DEMAVRGVKLDLVSFTIIVYAALKQ 631



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 154/316 (48%), Gaps = 12/316 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR   V M+   S G   +     + +  LC++  ++EA    + +  +GV     T+ +
Sbjct: 217 ARGLVVRME---SEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 273

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  +++  ++  ++ HD+I  G+         +I        V E + L  ++ + G
Sbjct: 274 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLG 333

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           +VP   A+N LI + C+ + F     L   M  R   P+  TY  +I+ LCK     +A 
Sbjct: 334 MVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDAL 393

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F+ ++++G       Y ++I+G CK G L  AR +   M+ +GL P   +Y+ +I G 
Sbjct: 394 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL 453

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           CR  +L  A  LH+EM ++G      T+  LI G C   + DEA  LF++M    +  + 
Sbjct: 454 CRNGDLSSAMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNE 513

Query: 410 ITYNTLIQGYCKEGKI 425
           +T+N +I+GYC  G I
Sbjct: 514 VTFNVMIEGYCLVGNI 529



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 154/317 (48%), Gaps = 16/317 (5%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR F   +D    +   PN  +  + I+  C  G I +AF  + ++ EMG+     T+ S
Sbjct: 498 ARLFDKMID----SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRS 553

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY----------LIQAFCNDGKVSEGYELLRQVLED 228
            + G           +   DL E+ Y          L+     +G+ +E Y L  ++   
Sbjct: 554 LISGLCLTSGVSKANEFVADL-ENSYAVLNNFSLTALLYGLFREGRFTETYHLWDEMAVR 612

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+  +  +F  ++    ++ +  +   L   M  +   PD+  Y  +I+ L K    ++A
Sbjct: 613 GVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQA 672

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              ++ +   GY P+TV +T +I+ LCK G+LG A  +  EM+   +LPN++TYN  +  
Sbjct: 673 LNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDY 732

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +    ++E+AK LH  ML +G+  + V++N LI GLC  G+  EA  L  ++ + G   D
Sbjct: 733 FATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPD 791

Query: 409 VITYNTLIQGYCKEGKI 425
            I+Y+T+I   CK G I
Sbjct: 792 CISYSTIIHELCKMGDI 808



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESG-----YL----IQAFCNDGKVSEGYELLRQV 225
           T +  L   +KI +  L   L+  +++SG     Y+    I+A+C    +     L+ ++
Sbjct: 165 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 224

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
             +G+      +N L+   C+        E+ + MV      D  TY  ++ G C+  + 
Sbjct: 225 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 284

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A R+ +D+   G+VP     + +I  L K   + +A  +  ++   G++PN + YN++
Sbjct: 285 EMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNAL 344

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I   C+ +  ++A RL KEM  +G     VTY  LI  LC  G  ++A  LF++M  KGI
Sbjct: 345 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 404

Query: 406 FRDVITYNTLIQGYCKEGKI 425
              V  YN+LI GYCK+G +
Sbjct: 405 KVTVYPYNSLINGYCKQGSL 424



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 75/330 (22%), Positives = 139/330 (42%), Gaps = 13/330 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +   L   L        A +F   L+++    N  SL   +  L   G   E 
Sbjct: 543 GLKPDNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGLFREGRFTET 602

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +  + ++   GV   + ++   +   +K    +    L+ ++ E G          +I A
Sbjct: 603 YHLWDEMAVRGVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDA 662

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +  + +      Q++ DG  P       LI+  C+    G    L   M+A N  P+
Sbjct: 663 LSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPN 722

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY   ++    +   +E  +  +    +G++   V +  +I GLCK G + +A  +  
Sbjct: 723 KFTYNCFLDYFA-TEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAIDLMR 781

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++   G  P+  +Y+++IH  C++ ++ +A  L  EML KG     V YN  I    +HG
Sbjct: 782 KITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHG 841

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +D+A  ++  M + G+  +  TY  L+ G
Sbjct: 842 ESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 3/183 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C  G +     L +++L   ++P    +N  +  F  + +  +  +L H+ + + 
Sbjct: 694 LINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL-HSAMLQG 752

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                 ++  +I GLCK+ K  EA  +   + E G+ PD + Y+T+IH LCKMG +  A 
Sbjct: 753 HLASIVSFNILIKGLCKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAF 812

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           ++W EM++KGL P+   YN  I  +C +    ++A  ++  M+  G      TY  L++G
Sbjct: 813 ELWNEMLYKGLKPDVVAYNIFIR-WCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871

Query: 384 LCL 386
           + L
Sbjct: 872 ISL 874



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L  G+       ++++    + + F    +L   M+      D + Y   I   C+SR  
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A  +   ++  G     V Y  +++GLCK   + +A ++   M++ G+  +E TY ++
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 346 IHGYCRIDNLEEAKRLHKEML-----------------------------------DKGY 370
           ++G+CR++ LE A R+  +M+                                   D G 
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 YN LI  LC + R D+A  LF+EMA +G+  + +TY  LI   CK G I
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 389



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 48/228 (21%), Positives = 96/228 (42%), Gaps = 11/228 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD +    + D+L +      A++  D     G+SPN  +  + I  LC+SG +  A
Sbjct: 648 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVIDGYSPNTVTHTVLINNLCKSGYLGSA 707

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL--------LGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
                ++    V  +  T+N  L        +   K   + ++      ++    LI+  
Sbjct: 708 ELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGL 767

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK+ E  +L+R++ E G  P+  +++ +I   C+  +  +  EL + M+ +   PD 
Sbjct: 768 CKAGKIQEAIDLMRKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDV 827

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             Y   I       +  +A  ++ ++   G  P+   Y  ++ G+  M
Sbjct: 828 VAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLM 875


>gi|449446855|ref|XP_004141186.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Cucumis sativus]
          Length = 1079

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 173/404 (42%), Gaps = 65/404 (16%)

Query: 87  LLSIRFFQWLHSHYGFSPDLVS--CNVLFDSLVEARAFKVAMDFL-------DSTGF--- 134
           +L+++F +W+    G  P+ ++    +    LV+AR +  A   L         + F   
Sbjct: 33  VLALKFLKWVIKQPGLEPNHLTHILGITTHVLVKARLYGYAKSILKHLAQKNSGSNFLFG 92

Query: 135 ---------SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
                    S NP   +L I+     G++  A   FS +   G   S+ T N  +   +K
Sbjct: 93  VLMDTYPLCSSNPAVFDLLIRVYLRQGMVGHAVNTFSSMLIRGFKPSVYTCNMIMASMVK 152

Query: 186 IDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R  LVW  +  ++ S           LI   C  GK+ +   +L  +  +G VP   +
Sbjct: 153 NCRAHLVWSFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKAVNILTMMERNGYVPTIVS 212

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N L+S  C+K  F     L+H M  +    D  TY   I+ LC++ +  + Y V   ++
Sbjct: 213 YNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDSLCRNSRSAQGYLVLKKMR 272

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +   P+ V Y T+I+G  K G +G A +++ EMI   L PN  TYN +I+GYC   N E
Sbjct: 273 NKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPNLITYNILINGYCINGNFE 332

Query: 357 EAKRLHKEMLDKGYGETTVTYNTL-----------------------------------I 381
           EA R+   M         VT  TL                                   I
Sbjct: 333 EALRVLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMI 392

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GLC +G  DEA+ L  EM + G+  D+IT++ LI G+CK G I
Sbjct: 393 DGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVGNI 436



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 152/326 (46%), Gaps = 29/326 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ V+   L + L ++  F VA + L+       S N  S  + I  LC +GL++EAF  
Sbjct: 348 PNEVTIGTLLNGLYKSAKFDVARNILERYCINRTSLNCISHTVMIDGLCRNGLLDEAFQL 407

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             ++ + GV                          + D+I    LI  FC  G +++  E
Sbjct: 408 LIEMCKDGV--------------------------HPDIITFSVLINGFCKVGNINKAKE 441

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           ++ ++  +G VP N  F+ LI   C+  N     +    M    +  DNFT   ++  LC
Sbjct: 442 VMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSLVASLC 501

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           ++ K +EA    + +   G VP++V +  +I+G   +G    A  ++  MI  G  P+ +
Sbjct: 502 ENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPF 561

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY S++   C+  N  EA++L K++        T++YNTLI  +   G   EA  LFEEM
Sbjct: 562 TYGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEM 621

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIV 426
            Q  I  D  TY  ++ G  +EG++V
Sbjct: 622 IQNNILPDSYTYTCILSGLIREGRLV 647



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 174/405 (42%), Gaps = 82/405 (20%)

Query: 101 GFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P + +CN++  S+V+  RA  V   F  + ++   PN +S  + I  LC  G +++A
Sbjct: 135 GFKPSVYTCNMIMASMVKNCRAHLVWSFFKQMLTSRVCPNVSSFNILISVLCVQGKLKKA 194

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------------IES 202
               + ++  G   +I ++N+ L  C K  R      L H +               I+S
Sbjct: 195 VNILTMMERNGYVPTIVSYNTLLSWCCKKGRFKFALVLIHHMECKGIQADVCTYNMFIDS 254

Query: 203 ---------GYL--------------------IQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                    GYL                    I  F  +GK+     +  +++E  L P 
Sbjct: 255 LCRNSRSAQGYLVLKKMRNKMITPNEVSYNTLINGFVKEGKIGVATRVFNEMIELNLSPN 314

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL-------------- 279
              +N LI+ +C   NF     +L  M A +  P+  T   ++NGL              
Sbjct: 315 LITYNILINGYCINGNFEEALRVLDVMEANDVRPNEVTIGTLLNGLYKSAKFDVARNILE 374

Query: 280 --CKSRKRL-------------------EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
             C +R  L                   EA+++  ++ + G  PD + ++ +I+G CK+G
Sbjct: 375 RYCINRTSLNCISHTVMIDGLCRNGLLDEAFQLLIEMCKDGVHPDIITFSVLINGFCKVG 434

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A+++  ++  +G +PN   ++++I+  C++ N+ EA + +  M   G      T N
Sbjct: 435 NINKAKEVMSKIYREGFVPNNVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCN 494

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +L+A LC +G+  EA      +++ G+  + +T++ +I GY   G
Sbjct: 495 SLVASLCENGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVG 539



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 87/367 (23%), Positives = 155/367 (42%), Gaps = 54/367 (14%)

Query: 113  FDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
             D L +A   K A+     ++  G S +  +L          G +  A    SK +   V
Sbjct: 673  IDGLFKAGQSKAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNV 732

Query: 170  FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYE 220
              ++ T+N  L G  +       +KLY+ +  SG+         LI   CN G +  G +
Sbjct: 733  IPNLTTFNILLHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGMLELGIK 792

Query: 221  LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
            +L+  + +    ++  FN LI + CE  +  +V +L H M     + D  T + V + L 
Sbjct: 793  MLKMFIAESSTIDDLTFNMLIRKCCEINDLDKVIDLTHNMEVFRVSLDKDTQKAVTDVLV 852

Query: 281  KSRKRLEAYRVF-NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL---- 335
            + R   + Y VF +++ ++G++P +  Y T++  +C++G +  A K+  +M+  G+    
Sbjct: 853  R-RMVSQNYFVFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAFKLKDQMVALGISLDD 911

Query: 336  -------------------------------LPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
                                           +P   T+ +++H +C+ DN +EA  L   
Sbjct: 912  AAECAMVRGLALCGKIEEAMWILQRMLRMKKIPTTSTFTTLMHVFCKKDNFKEAHNLKIL 971

Query: 365  MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG-----Y 419
            M         V YN LI+  C +G    A   +EE+ QKG+  ++ TY  L+       Y
Sbjct: 972  MEHYRVKLDIVAYNVLISACCANGDVITALDFYEEIKQKGLLPNMTTYRVLVSAISTKHY 1031

Query: 420  CKEGKIV 426
               G+IV
Sbjct: 1032 VSRGEIV 1038



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 150/345 (43%), Gaps = 27/345 (7%)

Query: 101 GFSPDLVSCNVLFDSLV----------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           GF P+    NV+F +L+          EA  F  AM+       +   NSL   +  LCE
Sbjct: 450 GFVPN----NVIFSTLIYNSCKVGNVYEAMKFYAAMNLNGQNADNFTCNSL---VASLCE 502

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
           +G + EA      +  +G+  +  T++  + G   +      + ++  +I  G+      
Sbjct: 503 NGKLVEAEEFLHHISRIGLVPNSVTFDCIINGYANVGDGSGAFSVFDRMISCGHHPSPFT 562

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L++  C      E  +LL+++    L  +  ++N LI    +  N      L   M+
Sbjct: 563 YGSLLKVLCKGQNFWEARKLLKKLHCIPLAVDTISYNTLIVEISKSGNLLEAVRLFEEMI 622

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWL 320
             N  PD++TY  +++GL +  + + A+     L ++  +  ++++YT  I GL K G  
Sbjct: 623 QNNILPDSYTYTCILSGLIREGRLVCAFIFLGRLMQKEILTLNSIVYTCFIDGLFKAGQS 682

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A  ++ EM  KGL  +    NS+  GY R+  +  A  L  +  +K       T+N L
Sbjct: 683 KAALYLFKEMEEKGLSLDLIALNSITDGYSRMGKVFSASSLISKTRNKNVIPNLTTFNIL 742

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + G          + L+  M + G F + +TY++LI G C  G +
Sbjct: 743 LHGYSRGQDIMSCFKLYNLMRRSGFFPNRLTYHSLILGLCNHGML 787



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 27/227 (11%)

Query: 110  NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
            +VL   +V    F V M  +   GF P        ++ +C  G I+ AF    KLK+  V
Sbjct: 849  DVLVRRMVSQNYF-VFMHEMLKKGFIPTSKQYCTMMKRMCRVGDIQGAF----KLKDQMV 903

Query: 170  FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
               I   ++A           +V  L            A C  GK+ E   +L+++L   
Sbjct: 904  ALGISLDDAA--------ECAMVRGL------------ALC--GKIEEAMWILQRMLRMK 941

Query: 230  LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             +P  + F  L+  FC+K NF     L   M       D   Y  +I+  C +   + A 
Sbjct: 942  KIPTTSTFTTLMHVFCKKDNFKEAHNLKILMEHYRVKLDIVAYNVLISACCANGDVITAL 1001

Query: 290  RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
              + ++K++G +P+   Y  ++  +    ++     +  ++  +GL+
Sbjct: 1002 DFYEEIKQKGLLPNMTTYRVLVSAISTKHYVSRGEIVLKDLNDRGLV 1048


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V  N L D        ++A+D    +D  G SPN  +    I   C+S  ++ A
Sbjct: 207 GFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRA 266

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              FS++ + G+  ++ T+ + + G     + D  ++L   +  SG          LI A
Sbjct: 267 MMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDA 326

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V E   LL  +++ G+      +  LI   C+   F     L+ T+V++   PD
Sbjct: 327 LCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPD 386

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLC+ ++  EA  V +D+ E+G  P  V YT +I  L +      ++K+  
Sbjct: 387 AHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKILD 446

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +MI  G+ P+ +TY   +  YC    +E+A+ +   M+D G     VTYN LI G    G
Sbjct: 447 KMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLG 506

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            T +A+  F+ M   G   +  +Y  L++
Sbjct: 507 LTSQAFSTFKHMVANGCKPNEESYTVLLR 535



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 156/346 (45%), Gaps = 22/346 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           ++R +  L + Y  + DL +      SL+ A             GF+P+ ++   ++   
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRA-------------GFAPDSHAYTSFVVGY 117

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C +GL+  A   F  +   G   +  T+ + L G            ++  +   G     
Sbjct: 118 CRAGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDP 177

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                ++   C  G+  E   LL   + +G  P    +N LI  +C   +     ++   
Sbjct: 178 HVYATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFER 237

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M     +P+  TY E+I+G CKSRK   A  +F+ + + G VP+ V YT +I G C  G 
Sbjct: 238 MDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQ 297

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  A ++   M + GL+PNE+T + +I   C+ + + EA+ L   ++ KG     + Y +
Sbjct: 298 LDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTS 357

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC  GR   A  L + +  +G   D  TY++LI G C++ ++
Sbjct: 358 LIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKEL 403



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 12/328 (3%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
             L   L  A   + AM     + + G +P+P+     +  LC +G   EA    S    
Sbjct: 146 TALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMA 205

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
            G   ++  +N+ + G   +   +L   ++  +  +G          LI  FC   K+  
Sbjct: 206 EGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDR 265

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L  ++++ GLVP    +  LI   C          LL +M      P+ +T   +I+
Sbjct: 266 AMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLID 325

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK  +  EA  +   L ++G   + ++YT++I GLCK G    A ++   ++ +G +P
Sbjct: 326 ALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVP 385

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +TY+S+I G CR   L EA  +  +M++KG   + VTY  +I  L      D +  + 
Sbjct: 386 DAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKIL 445

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++M   GI  DV TY   ++ YC EG++
Sbjct: 446 DKMIAAGIKPDVFTYTIFVRSYCHEGRM 473



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/346 (23%), Positives = 145/346 (41%), Gaps = 34/346 (9%)

Query: 112 LFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           L D L +A  F  A   M  L S GF P+ ++    I  LC    + EA      + E G
Sbjct: 358 LIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKG 417

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
           V  S  T+   +   ++    D   K+   +I +G           ++++C++G++ +  
Sbjct: 418 VQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAE 477

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT---MVARNRAPDNFTYEEVI 276
            ++  +++ G+ P    +N LI   C   N G  S+   T   MVA    P+  +Y  ++
Sbjct: 478 HMMLHMVDHGVCPNLVTYNALI---CGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLL 534

Query: 277 NGLCKSRK------------RLEAYRVFNDLKE---RGYVPDTV-MYTTVIHGLCKMGWL 320
             L K               ++   +  + L E   +  +P  + +Y   +  LC++  L
Sbjct: 535 RLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRL 594

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A+ +  EM    L P+E  Y S+I   CR+  L EA      M+  GY     +Y  +
Sbjct: 595 DEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHI 654

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           I+ LC  G    A  +F +M  K    + I +  LI G  ++G + 
Sbjct: 655 ISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVA 700



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 51/169 (30%), Positives = 82/169 (48%)

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           + +  +R  A +  TY  +IN  C +     + R  + L   G+ PD+  YT+ + G C+
Sbjct: 60  MESFASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCR 119

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L  A +++  M  +G +   +TY +++HG C    + EA  +   M   G       
Sbjct: 120 AGLLAHACRLFVLMPLRGCVRTAFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHV 179

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y T++ GLC  GRT EA  L  +   +G   +V+ YN LI GYC  G +
Sbjct: 180 YATMVHGLCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDL 228



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/378 (22%), Positives = 158/378 (41%), Gaps = 22/378 (5%)

Query: 34  KESQQLYTEIAKQVCKITR--TKPRWEQTLLSD--IPSFNFNDPLFFREFLKQQNNVLLS 89
           K ++ +YT +   +CK  R     R  QTL+S   +P  +    L   + L +Q  +  +
Sbjct: 349 KVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLI--DGLCRQKELSEA 406

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           +     +    G  P  V+  ++ D LV    A   K  +D + + G  P+  +  ++++
Sbjct: 407 MLVLDDMMEK-GVQPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVR 465

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
             C  G +E+A      + + GV  ++ T+N+ + G   +  T   +  +  ++ +G   
Sbjct: 466 SYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANG--- 522

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL-ISRFCEKKNFGRVSELLHTMVARNR 265
              C   +  E Y +L ++L       N   N + I +  E K       LL  MV    
Sbjct: 523 ---CKPNE--ESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYL---HGLLEEMVKLQL 574

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +   Y   +  LC+  +  EA  +  +++     P   +YT++I   C++  L +A  
Sbjct: 575 PSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALT 634

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
               M+  G +P   +Y  +I   C   +++ AK++  +ML K Y    + +  LI GL 
Sbjct: 635 FVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLL 694

Query: 386 LHGRTDEAYHLFEEMAQK 403
             G   E   L   M +K
Sbjct: 695 QKGYVAECSSLLSVMEEK 712


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 108/368 (29%), Positives = 166/368 (45%), Gaps = 48/368 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ V+ N L D   +A    VA+     +      P+  +    +  LC++  IEEA C 
Sbjct: 134 PNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCM 193

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDR-TDLVWKLYHDLIESGY---------LIQAFC 210
            +++K  G      T++    G +K D        LY + I  G          L+   C
Sbjct: 194 LNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLC 253

Query: 211 NDGKVSEGYELLRQVLEDGLVPENT----------------------------------- 235
            +GKV +  E+L+ ++E GLVP                                      
Sbjct: 254 KEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCI 313

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           AFN +I +FCE +   +  E +  MV +  AP   TY  +I+G  +       +++  ++
Sbjct: 314 AFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEM 373

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +E G  P+ + Y ++I+ LCK G + +A  +  +M+ +G+LPN   YN +I G C +  L
Sbjct: 374 EENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKL 433

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA R   EM   G G T VTYN+LI GLC  G+  EA  +F  +   G   DVITYN+L
Sbjct: 434 REALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSL 493

Query: 416 IQGYCKEG 423
           I GY   G
Sbjct: 494 ISGYSNAG 501



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 161/336 (47%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEAR-AFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           GF PD  + +++FD L+++      A+D        G   +  +  + +  LC+ G +E+
Sbjct: 201 GFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEK 260

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKI---DRTDLVWK------LYHDLIESGYLIQ 207
           A      L E G+      +N+ + G  +I   DR  L  +      L  + I    +I 
Sbjct: 261 AEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNSVID 320

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC    + +  E +++++  G+ P    +N LI  +     F R  ++L  M      P
Sbjct: 321 KFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENGEKP 380

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  +Y  +IN LCK  K LEA  V  D+  RG +P+  +Y  +I G C +G L +A + +
Sbjct: 381 NVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFF 440

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G+     TYNS+I G C++  L+EA+ +   +   G+    +TYN+LI+G    
Sbjct: 441 DEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNA 500

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G + +   L+E M + G+   + T++ LI G  KEG
Sbjct: 501 GNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG 536



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 161/342 (47%), Gaps = 19/342 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           GF PD +       + V+    K+AM+  ++       PN     + I  LC+   I +A
Sbjct: 61  GFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDA 120

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQA 208
              F ++    +  +  T+N+ + G  K    D+           K+   +I    L+  
Sbjct: 121 EKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSG 180

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN-FGRVSELLHTMVARNRAP 267
            C   ++ E   +L ++  +G VP+   ++ +     +  +  G   +L    + +    
Sbjct: 181 LCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREAIGKGVKI 240

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           DN+T   ++NGLCK  K  +A  V   L E G VP  V+Y T+++G C++G +  A    
Sbjct: 241 DNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTI 300

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG---L 384
            +M  +GL PN   +NS+I  +C +  +++A+   K+M+ KG   +  TYN LI G   L
Sbjct: 301 EQMESRGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRL 360

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C+  R    + + EEM + G   +VI+Y +LI   CK+GKI+
Sbjct: 361 CVFSR---CFQILEEMEENGEKPNVISYGSLINCLCKDGKIL 399



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 154/338 (45%), Gaps = 15/338 (4%)

Query: 101 GFSPDLVSCNVLFDS----LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P + + N+L D      V +R F++ ++ ++  G  PN  S    I CLC+ G I E
Sbjct: 342 GIAPSVETYNILIDGYGRLCVFSRCFQI-LEEMEENGEKPNVISYGSLINCLCKDGKILE 400

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A      +   GV  +   +N  + G   + +     + + ++ ++G          LI+
Sbjct: 401 AEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIK 460

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK+ E  E+   +   G  P+   +N LIS +    N  +  EL  TM      P
Sbjct: 461 GLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKP 520

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              T+  +I+G  K   +L+   +FN++ +    PD V+Y  +IH   + G +  A  + 
Sbjct: 521 TINTFHPLISGCSKEGIKLKE-TLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQ 579

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G+ P+  TYNS+I G+ +   L E K L  +M  KG      TY+ LI G C  
Sbjct: 580 KEMVDMGVRPDNKTYNSLILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDL 639

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + AY  + EM + G   +V   N L  G  K+G++
Sbjct: 640 KDFNGAYVWYREMLENGFLPNVCICNELSTGLRKDGRL 677



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 148/329 (44%), Gaps = 15/329 (4%)

Query: 91  RFFQWLHS--HYGFSPDLVSCNVLFDSLV-EARAFKVAMDFLDSTGFS--PNPNSLELYI 145
           R FQ L      G  P+++S   L + L  + +  +  M   D  G    PN N   + I
Sbjct: 365 RCFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLI 424

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C  G + EA   F ++ + G+  +I T+NS + G  K+ +     +++  +  +G+ 
Sbjct: 425 DGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHC 484

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  + N G   +  EL   + + GL P    F+ LIS  C K+       L
Sbjct: 485 PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISG-CSKEGIKLKETL 543

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M+  N +PD   Y  +I+   ++    +A+ +  ++ + G  PD   Y ++I G  K
Sbjct: 544 FNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLK 603

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L + + +  +M  KGL+P   TY+ +I G+C + +   A   ++EML+ G+      
Sbjct: 604 EGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGFLPNVCI 663

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
            N L  GL   GR  EA  +  EM   G+
Sbjct: 664 CNELSTGLRKDGRLQEAQSICSEMIANGM 692



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 7/221 (3%)

Query: 205 LIQAFCNDGK----VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
           ++ + C++ K    VSE Y+ +RQ   +G +P       ++    E K F  V +L   M
Sbjct: 1   MLLSVCSESKMHSQVSELYDFMRQ---EGRLPSFGYVRMIVESLVESKKFDNVLDLFKEM 57

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           V     PD   Y   +    K      A  +F  +K R  VP+  +Y  +I GLCK   +
Sbjct: 58  VGLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRI 117

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            DA K++ EM  + L+PN  T+N++I GYC+   ++ A  L + M  +    + +T+N+L
Sbjct: 118 RDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSL 177

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++GLC   R +EA  +  E+   G   D  TY+ +  G  K
Sbjct: 178 LSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLK 218



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 134/300 (44%), Gaps = 27/300 (9%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           DF+   G  P+   + + ++ L ES   +     F ++  +G       +  A+L  +K+
Sbjct: 20  DFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVYGRAMLAAVKL 79

Query: 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
               L  +L+  +                       R+V     VP    +N LI   C+
Sbjct: 80  GDLKLAMELFETMKR---------------------RKV-----VPNVFVYNVLIGGLCK 113

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +K      +L   M  RN  P+  T+  +I+G CK+ +   A  +   +K+    P  + 
Sbjct: 114 EKRIRDAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIIT 173

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK-RLHKEM 365
           + +++ GLCK   + +AR M  E+   G +P+ +TY+ +  G  + D+   A   L++E 
Sbjct: 174 FNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDGLLKSDDGAGAALDLYREA 233

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + KG      T + L+ GLC  G+ ++A  + + + + G+    + YNT++ GYC+ G +
Sbjct: 234 IGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDM 293



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 57/186 (30%), Positives = 94/186 (50%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           L+S   E K   +VSEL   M    R P       ++  L +S+K      +F ++   G
Sbjct: 2   LLSVCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLG 61

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           + PD ++Y   +    K+G L  A +++  M  + ++PN + YN +I G C+   + +A+
Sbjct: 62  FRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIRDAE 121

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +L  EM  +      VT+NTLI G C  G  D A  L E M ++ +   +IT+N+L+ G 
Sbjct: 122 KLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGL 181

Query: 420 CKEGKI 425
           CK  +I
Sbjct: 182 CKARRI 187


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 166/336 (49%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+V+   L   L + + F+V ++ +D      FSP+  ++   ++ L + G +EEA 
Sbjct: 293 LKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEAL 352

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWK------LYHDLIESGYLIQAF 209
               ++ E GV  +I  +N+ +    K    D  +L++       L  + +    LI  F
Sbjct: 353 NLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMF 412

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK+      L ++++ GL P    +N LI+  C+  +      L+  M+ +   P  
Sbjct: 413 CRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTV 472

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  ++ G C   K  +A R+++++  +G VP    +TT++ GL + G + DA K++ E
Sbjct: 473 VTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTE 532

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M    + PN  TYN MI GYC   N+ +A     EM++KG    T +Y  LI GLCL G+
Sbjct: 533 MAEWNVKPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQ 592

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA    + + +     + I Y  L+ G+C+EGK+
Sbjct: 593 ASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKL 628



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 171/364 (46%), Gaps = 13/364 (3%)

Query: 74  LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD--- 130
           L  + +++ +  VL  +  F+ + +     P++ + + L   LV+ R F +AM+  D   
Sbjct: 161 LLIQHYVRSRR-VLDGVLVFKMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMI 219

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT- 189
           + G  P+       I+ LCE   +  A     +++  G   +I  +N  + G  K  +  
Sbjct: 220 NVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATGCDVNIVPYNVLIDGLCKKQKVW 279

Query: 190 -------DLVWK-LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
                  DL  K L  D++    L+   C   +   G E++ ++L     P   A + L+
Sbjct: 280 EAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLV 339

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
               ++        L+  +     +P+ F Y  +I+ LCK R   EA  +F+ + + G  
Sbjct: 340 EGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLC 399

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+ V Y+ +I   C+ G L  A     EMI  GL P+ Y YNS+I+G+C+  ++  A+ L
Sbjct: 400 PNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESL 459

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             EM++K    T VTY +L+ G C  G+ ++A  L+ EM  KGI   + T+ TL+ G  +
Sbjct: 460 MAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFR 519

Query: 422 EGKI 425
            G I
Sbjct: 520 AGLI 523



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 159/374 (42%), Gaps = 51/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G  P + +   L   L  A   + A+            PN  +  + I+  CE G + +A
Sbjct: 502 GIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEGYCEEGNMSKA 561

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY----------LI 206
           F   +++ E G+     ++   + G C+    ++   K++ D +  G           L+
Sbjct: 562 FEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASE--AKVFVDGLHKGNCELNEICYTGLL 619

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC +GK+ E   + + +   G+  +   +  LI    + K+      LL  M  R   
Sbjct: 620 HGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLK 679

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD+  Y  +I+   K+    EA+ +++ +   G VP+ V YT VI+GLCK G++ +A  +
Sbjct: 680 PDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEIL 739

Query: 327 WFEM-----------------------------------IHKGLLPNEYTYNSMIHGYCR 351
             +M                                   I KGLL N  TYN +I G+CR
Sbjct: 740 CSKMRPGNSVPNQVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCR 799

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +EEA  L   M+  G     +TY T+I+ LC      +A  L+  M +KGI  D + 
Sbjct: 800 QGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVA 859

Query: 412 YNTLIQGYCKEGKI 425
           YNTLI G C  G++
Sbjct: 860 YNTLIHGCCVAGEM 873



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 182/471 (38%), Gaps = 70/471 (14%)

Query: 25  QLRNLSIETKESQQLY-----TEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREF 79
             RNLS     SQ+        +    V +I R K  WE  L S++ S            
Sbjct: 18  SFRNLSSVIDSSQEACRIGEDKQFVDSVRRIVRGKRSWEIALSSELVSRRLKTIHVEEIL 77

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN 139
           +   ++  L +RFF +L  H GF     S  +L  +LV+A  F  A   L +        
Sbjct: 78  IGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVQANLFWPASSLLQTLLLRALKP 137

Query: 140 S--------------------LELYIQCLCESGLIEEAFCAFS-KLKEMGVFGSIKTWNS 178
           S                     +L IQ    S  + +    F   + ++ +   ++T ++
Sbjct: 138 SEVFDALFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVFKMMMTKVSLLPEVRTLSA 197

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            L G +K     L  +L+ D+I  G          +I++ C    +S   E++ Q+   G
Sbjct: 198 LLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCELKDLSRAKEMIVQMEATG 257

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS------- 282
                  +N LI   C+K+       +   +  +   PD  TY  ++ GLCK        
Sbjct: 258 CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGL 317

Query: 283 -------------------------RKR---LEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
                                    RKR    EA  +   + E G  P+  +Y  +I  L
Sbjct: 318 EMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSL 377

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK     +A  ++  M   GL PN+ TY+ +I  +CR   L+ A     EM+D G   + 
Sbjct: 378 CKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSV 437

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             YN+LI G C  G    A  L  EM  K +   V+TY +L+ GYC +GKI
Sbjct: 438 YPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKI 488



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 161/374 (43%), Gaps = 49/374 (13%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           + +G SP++   N L DSL + R F  A    D +   G  PN  +  + I   C  G +
Sbjct: 359 AEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKL 418

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           + A     ++ +MG+  S+  +NS + G  K         L  ++I             L
Sbjct: 419 DTALSFLGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSL 478

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPE-------------------------------- 233
           +  +C+ GK+++   L  ++   G+VP                                 
Sbjct: 479 MGGYCSKGKINKALRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNV 538

Query: 234 ---NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                 +N +I  +CE+ N  +  E L+ M+ +   PD ++Y  +I+GLC + +  EA +
Sbjct: 539 KPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEA-K 597

Query: 291 VFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           VF D   +G    + + YT ++HG C+ G L +A  +  +M  +G+  +   Y  +I G 
Sbjct: 598 VFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGS 657

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            +  + +    L KEM D+G     V Y ++I      G   EA+ +++ M  +G   + 
Sbjct: 658 LKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNE 717

Query: 410 ITYNTLIQGYCKEG 423
           +TY  +I G CK G
Sbjct: 718 VTYTAVINGLCKAG 731



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 116/253 (45%), Gaps = 37/253 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARA----FKVAM---DFLDSTGFSPNPNSLELYIQCLCESGL 153
           G  PD    +V++ S+++A++    FK A    D + + G  PN  +    I  LC++G 
Sbjct: 677 GLKPD----DVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGF 732

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           + EA    SK++           N    GC            + D++  G         G
Sbjct: 733 VNEAEILCSKMRPGN-----SVPNQVTYGC------------FLDILTKGV--------G 767

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
            + +  EL   +L+ GL+     +N LI  FC +      SEL+  M+    +PD  TY 
Sbjct: 768 DMKKAVELHNAILK-GLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYT 826

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+ LC+     +A  ++N + E+G  PD V Y T+IHG C  G +G A ++  EM+ +
Sbjct: 827 TMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQ 886

Query: 334 GLLPNEYTYNSMI 346
           GL PN  T  + I
Sbjct: 887 GLKPNTETSETTI 899



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 134/329 (40%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  S   L   L    +A   KV +D L       N       +   C  G +EEA
Sbjct: 572 GIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEA 631

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +   GV   +  +   + G +K     +   L  ++ + G          +I A
Sbjct: 632 LSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDA 691

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G   E + +   ++ +G VP    +  +I+  C+         L   M   N  P+
Sbjct: 692 KSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPN 751

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY   ++ L K    ++     ++   +G + +T  Y  +I G C+ G + +A ++  
Sbjct: 752 QVTYGCFLDILTKGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELIT 811

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  G+ P+  TY +MI   CR +++++A  L   M +KG     V YNTLI G C+ G
Sbjct: 812 RMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAG 871

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
              +A  L  EM ++G+  +  T  T I 
Sbjct: 872 EMGKATELRNEMLRQGLKPNTETSETTIS 900


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 171/384 (44%), Gaps = 57/384 (14%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  GF P LV+ N L   L        A+D        PN  +    +  LC  G + EA
Sbjct: 42  TKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM-CKPNVVTFTTLMNGLCREGRVVEA 100

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT---------------------------D 190
                ++ E G+  +  T+ + + G  K+  T                           D
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 191 LVWK------------------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            +WK                  ++ D++    +I  FC+ GK SE   LL+++L   + P
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP 220

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   F+ LI+   ++ +     +LL  M++    P+  T   +++GLC S K  +A  +F
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 293 NDLKER-----------GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
             +++            G  PD   Y  +I GL   G   +A +++ EM H+G++P+  T
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           Y+SMI+G C+   L+EA ++   M  K +    VT+NTLI G C  G  D+   LF EM 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           ++GI  + ITY TLI+G+ K G I
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNI 424



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 148/302 (49%), Gaps = 17/302 (5%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F KL ++G   ++ T+N+ L G    DR      L+H +
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 200 IESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
            +        L+   C +G+V E   LL +++EDGL P    +  ++   C+  +     
Sbjct: 77  CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 136

Query: 255 ELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            LL  M   +   PD   Y  +I+GL K  +  +A  +F +++++G  PD V Y+ +I+G
Sbjct: 137 NLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            C  G   +A+++  EM+ + + P+  T++ +I+   +  +L  A+ L +EM+  G    
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEM-----------AQKGIFRDVITYNTLIQGYCKE 422
            VT NTL+ GLC  G+  +A  +F+ M           A  G+  DV TYN LI G   E
Sbjct: 257 VVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINE 316

Query: 423 GK 424
           GK
Sbjct: 317 GK 318



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 160/342 (46%), Gaps = 24/342 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+ ++   + D + +      A++ L    + +   P+       I  L + G   +
Sbjct: 111 GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTD 170

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQ 207
           A   F ++++ G+F  I T++  + G           ++ +  LV K+  D++    LI 
Sbjct: 171 AQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLIN 230

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM------V 261
           A   +G ++   +LL++++  G+ P     N L+   C+        E+   M      +
Sbjct: 231 ALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDI 290

Query: 262 ARNRA-----PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
               A     PD  TY  +I+GL    K LEA  ++ ++  RG VPDTV Y+++I+GLCK
Sbjct: 291 DATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCK 350

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              L +A +M+  M  K   PN  T+N++I GYC+   +++   L  EM  +G     +T
Sbjct: 351 QSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAIT 410

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           Y TLI G    G  + +  +F+EM   G++ D IT   ++ G
Sbjct: 411 YITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 32/260 (12%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF------- 250
           D+     LI+ FC+  K+        ++ + G  P    FN L+   C +          
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 251 ---------------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
                                GRV E   LL  MV     P+  TY  +++G+CK    +
Sbjct: 74  HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 133

Query: 287 EAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            A  +   ++E  ++ PD V+Y+ +I GL K G   DA+ ++ EM  KG+ P+  TY+ M
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I+G+C      EA+RL +EML +      VT++ LI  L   G  + A  L +EM   G+
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             +V+T NTL+ G C  GK+
Sbjct: 254 CPNVVTCNTLLDGLCDSGKL 273



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 142/320 (44%), Gaps = 23/320 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V  + + D L +      A +    +   G  P+  +    I   C SG   EA   
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++    +   + T++  +   +K    +    L  ++I SG          L+   C+
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269

Query: 212 DGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
            GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL   M
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 329

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             R   PD  TY  +INGLCK  +  EA ++F+ +  + + P+ V + T+I G CK G +
Sbjct: 330 PHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMV 389

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            D  +++ EM  +G++ N  TY ++I G+ ++ N+  +  + +EM+  G    T+T   +
Sbjct: 390 DDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNM 449

Query: 381 IAGLCLHGRTDEAYHLFEEM 400
           + GL        A  + EE+
Sbjct: 450 LTGLWSKEELKRALAMLEEL 469



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 293 NDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           N++K    +P D   +  +I   C    L  A   + ++   G  P   T+N+++HG C 
Sbjct: 3   NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D + EA  L  +M         VT+ TL+ GLC  GR  EA  L + M + G+  + IT
Sbjct: 63  EDRVSEALDLFHQMCKP----NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 412 YNTLIQGYCKEGKIVN 427
           Y T++ G CK G  V+
Sbjct: 119 YGTIVDGMCKMGDTVS 134



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 23/219 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----------LDST----GFSPNPNSLELYIQ 146
           G  P++V+CN L D L ++   K A++           +D+T    G  P+  +  + I 
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            L   G   EA   + ++   G+     T++S + G  K  R D   +++  +    +  
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI  +C  G V +G EL  ++   G+V     +  LI  F +  N     ++ 
Sbjct: 372 NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIF 431

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M++    PD  T   ++ GL    +   A  +  +L+
Sbjct: 432 QEMISSGVYPDTITIRNMLTGLWSKEELKRALAMLEELQ 470


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 62  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYQEILECGY 121

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G +     +   + + GL P   ++N L+S +    +      
Sbjct: 122 PASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFR 181

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  EA  +F+++   G VP  V +TT+I G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHC 241

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  BL++A  L  EM  KG     +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKGXKPDKI 301

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 302 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 353



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 150/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F         P SL  +   +   C+ G I  A   F  +
Sbjct: 92  TCRKVLEHLMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAI 151

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C + K+
Sbjct: 152 TKWGLRPSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKM 211

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 212 DEANELFDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 271

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ +  ++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 272 IYGLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 331

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G       
Sbjct: 332 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSK 391

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 171/384 (44%), Gaps = 57/384 (14%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           +  GF P LV+ N L   L        A+D        PN  +    +  LC  G + EA
Sbjct: 42  TKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM-CKPNVVTFTTLMNGLCREGRVVEA 100

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT---------------------------D 190
                ++ E G+  +  T+ + + G  K+  T                           D
Sbjct: 101 VALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIID 160

Query: 191 LVWK------------------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            +WK                  ++ D++    +I  FC+ GK SE   LL+++L   + P
Sbjct: 161 GLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISP 220

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   F+ LI+   ++ +     +LL  M++    P+  T   +++GLC S K  +A  +F
Sbjct: 221 DVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMF 280

Query: 293 NDLKER-----------GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
             +++            G  PD   Y  +I GL   G   +A +++ EM H+G++P+  T
Sbjct: 281 KAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVT 340

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           Y+SMI+G C+   L+EA ++   M  K +    VT+NTLI G C  G  D+   LF EM 
Sbjct: 341 YSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMG 400

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           ++GI  + ITY TLI+G+ K G I
Sbjct: 401 RRGIVANAITYITLIRGFRKVGNI 424



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 148/302 (49%), Gaps = 17/302 (5%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + I+C C    +  A   F KL ++G   ++ T+N+ L G    DR      L+H +
Sbjct: 17  SFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM 76

Query: 200 IESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
            +        L+   C +G+V E   LL +++EDGL P    +  ++   C+  +     
Sbjct: 77  CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSAL 136

Query: 255 ELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            LL  M   +   PD   Y  +I+GL K  +  +A  +F +++++G  PD V Y+ +I+G
Sbjct: 137 NLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMING 196

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            C  G   +A+++  EM+ + + P+  T++ +I+   +  +L  A+ L +EM+  G    
Sbjct: 197 FCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPN 256

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEM-----------AQKGIFRDVITYNTLIQGYCKE 422
            VT NTL+ GLC  G+  +A  +F+ M           A  G+  DV TYN LI G   E
Sbjct: 257 VVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINE 316

Query: 423 GK 424
           GK
Sbjct: 317 GK 318



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 160/342 (46%), Gaps = 24/342 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+ ++   + D + +      A++ L    + +   P+       I  L + G   +
Sbjct: 111 GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTD 170

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQ 207
           A   F ++++ G+F  I T++  + G           ++ +  LV K+  D++    LI 
Sbjct: 171 AQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLIN 230

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM------V 261
           A   +G ++   +LL++++  G+ P     N L+   C+        E+   M      +
Sbjct: 231 ALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDI 290

Query: 262 ARNRA-----PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
               A     PD  TY  +I+GL    K LEA  ++ ++  RG VPDTV Y+++I+GLCK
Sbjct: 291 DATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCK 350

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              L +A +M+  M  K   PN  T+N++I GYC+   +++   L  EM  +G     +T
Sbjct: 351 QSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAIT 410

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           Y TLI G    G  + +  +F+EM   G++ D IT   ++ G
Sbjct: 411 YITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNMLTG 452



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 120/260 (46%), Gaps = 32/260 (12%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF------- 250
           D+     LI+ FC+  K+        ++ + G  P    FN L+   C +          
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 251 ---------------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
                                GRV E   LL  MV     P+  TY  +++G+CK    +
Sbjct: 74  HQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTV 133

Query: 287 EAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            A  +   ++E  ++ PD V+Y+ +I GL K G   DA+ ++ EM  KG+ P+  TY+ M
Sbjct: 134 SALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCM 193

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I+G+C      EA+RL +EML +      VT++ LI  L   G  + A  L +EM   G+
Sbjct: 194 INGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGV 253

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             +V+T NTL+ G C  GK+
Sbjct: 254 CPNVVTCNTLLDGLCDSGKL 273



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 143/320 (44%), Gaps = 23/320 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V  + + D L +      A +    +   G  P+  +    I   C SG   EA   
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++    +   + T++  +   +K    +    L  ++I SG          L+   C+
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269

Query: 212 DGKVSEGYELLRQVLE-----------DGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
            GK+ +  E+ + + +           +G+ P+   +N LIS    +  F    EL   M
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEM 329

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             R   PD  TY  +INGLCK  +  EA ++F+ +  + + P+ V + T+I G CK G +
Sbjct: 330 PHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGMV 389

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            D  +++ EM  +G++ N  TY ++I G+ ++ N+  +  + +EM+  G    T+T   +
Sbjct: 390 DDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSGVYPDTITIRNM 449

Query: 381 IAGLCLHGRTDEAYHLFEEM 400
           + GL       +A  + EE+
Sbjct: 450 LTGLWSKEELKKALAMLEEL 469



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 5/136 (3%)

Query: 293 NDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           N++K    +P D   +  +I   C    L  A   + ++   G  P   T+N+++HG C 
Sbjct: 3   NNIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCV 62

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D + EA  L  +M         VT+ TL+ GLC  GR  EA  L + M + G+  + IT
Sbjct: 63  EDRVSEALDLFHQMCKP----NVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQIT 118

Query: 412 YNTLIQGYCKEGKIVN 427
           Y T++ G CK G  V+
Sbjct: 119 YGTIVDGMCKMGDTVS 134



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 48/219 (21%), Positives = 90/219 (41%), Gaps = 23/219 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----------LDST----GFSPNPNSLELYIQ 146
           G  P++V+CN L D L ++   K A++           +D+T    G  P+  +  + I 
Sbjct: 252 GVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILIS 311

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            L   G   EA   + ++   G+     T++S + G  K  R D   +++  +    +  
Sbjct: 312 GLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSP 371

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI  +C  G V +G EL  ++   G+V     +  LI  F +  N     ++ 
Sbjct: 372 NIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIF 431

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             M++    PD  T   ++ GL    +  +A  +  +L+
Sbjct: 432 QEMISSGVYPDTITIRNMLTGLWSKEELKKALAMLEELQ 470


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/315 (27%), Positives = 160/315 (50%), Gaps = 10/315 (3%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +A+ + ++ +D  G  PN  +    I  LC++ +++ A   F ++ + GV     T+N  
Sbjct: 221 KAYNLFLEMMDR-GIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGL 230
           + G + I +   V ++  ++   G          L+   CN+G+  E       ++  G+
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGI 339

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            P    +  LI  +  K     + +LL+ MV    +PD+  +  +     K     EA  
Sbjct: 340 KPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMH 399

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +FN +K++G  PD V +  +I  LCK+G + DA   + +M+++G+ PN + +NS+++G C
Sbjct: 400 IFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLC 459

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            +D  E+AK  + EML++G     V +NT++  LC  G+  +A  L + M + G   DVI
Sbjct: 460 TVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVI 519

Query: 411 TYNTLIQGYCKEGKI 425
           +Y TLI G+C  G+I
Sbjct: 520 SYTTLIGGHCLVGRI 534



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD    N++F +  +      AM   +     G SP+  +    I  LC+ G +++A
Sbjct: 373 GLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDA 432

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++   GV  +I  +NS + G   +D+ +   + Y +++  G          ++  
Sbjct: 433 VLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCN 492

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V +   L+  +   G  P+  ++  LI   C        ++ L  M++    PD
Sbjct: 493 LCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPD 552

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++G C++ +  +AY VF ++   G  P  V Y+T++HGL       +A++++ 
Sbjct: 553 EWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYL 612

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  G   N + YN +++G  + + ++EA +L + +  K +     T+N +I  L   G
Sbjct: 613 NMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSG 672

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R ++A HLF  ++  G+  DV TY  + +   +EG
Sbjct: 673 RNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEG 707



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 29/334 (8%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQC 147
           RFF       G  P++    +L        A     D L+     G SP+ +   +    
Sbjct: 328 RFFFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTA 387

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
             +  +I+EA   F+K+K+ G                          L  D++  G LI 
Sbjct: 388 YAKKAMIDEAMHIFNKMKQQG--------------------------LSPDVVNFGALID 421

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G+V +      Q++ +G+ P    FN L+   C    + +  E    M+ +   P
Sbjct: 422 ALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRP 481

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   +  ++  LC   + ++A R+ + ++  G  PD + YTT+I G C +G + +A K  
Sbjct: 482 DVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSL 541

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  GL P+E+TYN+++HGYCR   +++A  + +EML  G     VTY+T++ GL   
Sbjct: 542 DVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTT 601

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            R  EA  L+  M   G   ++  YN ++ G  K
Sbjct: 602 RRFSEAKELYLNMITSGKQWNIWIYNIILNGLSK 635



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 127/271 (46%), Gaps = 39/271 (14%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYE--------------------------------- 220
           K+  DL     LI  FC  G++  G+                                  
Sbjct: 89  KVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREA 148

Query: 221 ---LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV---ARNRAPDNFTYEE 274
              L++++ E G  P+  ++N L+  FC +K      ELLH M     R+  P+  +Y  
Sbjct: 149 MDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAT 208

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VING     +  +AY +F ++ +RG  P+ V YTTVI GLCK   +  A  ++ +MI KG
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P+  TYN +IHGY  I   +E  R+ +EM   G      TY +L+  LC +GR  EA 
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREAR 328

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             F+ M +KGI  +V  Y  LI GY  +G +
Sbjct: 329 FFFDSMIRKGIKPNVAIYGILIHGYATKGAL 359



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 148/339 (43%), Gaps = 16/339 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF- 158
           +PDL + ++L          +        +  +G+  N   +   ++ LC++  + EA  
Sbjct: 91  TPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWRVNNIVINQLLKGLCDAKRLREAMD 150

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------------GYLI 206
               ++ E+G    + ++N+ L G     R +   +L H + +S              +I
Sbjct: 151 ILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVI 210

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             F  +G+V + Y L  ++++ G+ P    +  +I   C+ +   R   +   M+ +   
Sbjct: 211 NGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVK 270

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PDN TY  +I+G     K  E  R+  ++   G  PD   Y ++++ LC  G   +AR  
Sbjct: 271 PDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFF 330

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  MI KG+ PN   Y  +IHGY     L E   L   M++ G       +N +      
Sbjct: 331 FDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAK 390

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               DEA H+F +M Q+G+  DV+ +  LI   CK G++
Sbjct: 391 KAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRV 429



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 159/344 (46%), Gaps = 21/344 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFS--PNPNSLELYIQCLCESGLI 154
           G +PD+VS N L       +  + A++ L    DS G S  PN  S    I      G +
Sbjct: 160 GCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYATVINGFFTEGQV 219

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           ++A+  F ++ + G+  ++ T+ + + G  K    D    ++  +I+ G          L
Sbjct: 220 DKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCL 279

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVA 262
           I  + + GK  E   +L ++   GL P+   +  L++  C   N GR  E      +M+ 
Sbjct: 280 IHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLC---NNGRCREARFFFDSMIR 336

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   P+   Y  +I+G        E + + N + E G  PD  ++  +     K   + +
Sbjct: 337 KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDE 396

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++ +M  +GL P+   + ++I   C++  +++A     +M+++G       +N+L+ 
Sbjct: 397 AMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVY 456

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           GLC   + ++A   + EM  +GI  DV+ +NT++   C +G+++
Sbjct: 457 GLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVM 500



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 68/340 (20%), Positives = 138/340 (40%), Gaps = 14/340 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQ 146
           ++F Q ++   G +P++   N L   L     ++ A +F   + + G  P+       + 
Sbjct: 434 LKFNQMMNE--GVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILC 491

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC  G + +A      ++ +G    + ++ + + G   + R D   K    ++  G   
Sbjct: 492 NLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKP 551

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  L+  +C  G++ + Y + R++L +G+ P    ++ ++      + F    EL 
Sbjct: 552 DEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELY 611

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+   +  + + Y  ++NGL K+    EA+++F  L  + +  +   +  +I  L K 
Sbjct: 612 LNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKS 671

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA  ++  +   GL+P+ +TY  +         LEE   L   M   G    +   
Sbjct: 672 GRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRML 731

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           N L+  L   G    A     ++ +K    +  T   LI 
Sbjct: 732 NALVRRLLHRGDITRAGAYLSKLDEKNFSLEASTTAMLIS 771


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGY 120

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 181 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L +A  L  EM  KG      
Sbjct: 241 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKGLKPDKF 300

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  +I G C+EG+ V+
Sbjct: 301 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVD 352



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ R FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 91  TCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 150

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 151 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 210

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 211 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 270

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 271 IYGLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENI 330

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +   
Sbjct: 331 RLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 390

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V TYN L+ G
Sbjct: 391 LLKEMQRNGHVPSVXTYNVLMNG 413


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 159/353 (45%), Gaps = 31/353 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P  V  N L  S+ + +     +     +DS G  PN  +L + I   C    +  AF  
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRVGFAFSV 118

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +K+ ++G      T+ + + G     +      L+  +I  G+         LI   C 
Sbjct: 119 LAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCK 178

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G  S    LL  +++    P   A+N +I   C+ +       L   MV +  +PD FT
Sbjct: 179 VGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFT 238

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ LC   +      + N++ +   +PD V + TV+  LCK G + +A  +  +MI
Sbjct: 239 YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMI 298

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ PN  TY +++ G+C +  ++EA ++   M+ KG     ++YNTLI G C   R D
Sbjct: 299 QRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRID 358

Query: 392 EAYH-------------------LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A H                   +F+ M  KG   +VI+YNTLI GYCK  +I
Sbjct: 359 KAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRI 411



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 134/276 (48%), Gaps = 9/276 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           I+ A  +F+++  M    S   +N  L    K+     +  L H +   G          
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI +FC+  +V   + +L ++L+ G  P+   F  LI   C +   G    L   M+   
Sbjct: 102 LINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEG 161

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +INGLCK      A R+   + ++   P+   Y T+I  LCK   + +A 
Sbjct: 162 FRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAF 221

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ EM+ KG+ P+ +TYNS+IH  C +   +    L  EM+D       V++NT++  L
Sbjct: 222 NLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDAL 281

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           C  G+  EA+ + ++M Q+G+  +V+TY  L+ G+C
Sbjct: 282 CKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHC 317



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 171/389 (43%), Gaps = 66/389 (16%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+   L + L +      A+  L S       PN  +    I  LC+   + EA
Sbjct: 161 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 220

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+   I T+NS +     +     V  L +++++S  +         + A
Sbjct: 221 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 280

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV+E ++++ ++++ G+ P    +  L+   C         ++  TMV +   P+
Sbjct: 281 LCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPN 340

Query: 269 NFTYEEVINGLCKSRK-------------------RLEAYRVFNDLKERGYVPDTVMYTT 309
             +Y  +ING CK ++                     EA +VF+ +  +G +P+ + Y T
Sbjct: 341 VISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVISYNT 400

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+G CK+  +  A  ++ EM  + L+P+  TY+++IHG C ++ L++A  L  EM+   
Sbjct: 401 LINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 460

Query: 370 YGETTVTY-----------------------------------NTLIAGLCLHGRTDEAY 394
                VTY                                   N  I G+C  G  + A 
Sbjct: 461 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 520

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            LF  ++ KG+  DV TY+ +I G C+ G
Sbjct: 521 DLFSNLSSKGLQPDVWTYSIMINGLCRRG 549



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 151/351 (43%), Gaps = 31/351 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+VS N + D+L +      A D +D     G  PN  +    +   C    ++EA   
Sbjct: 269 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------------------------LVW 193
           F  +   G   ++ ++N+ + G  KI R D                           +V 
Sbjct: 329 FDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVC 388

Query: 194 K-LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           K    ++I    LI  +C   ++ +   L  ++    L+P+   ++ LI   C  +    
Sbjct: 389 KGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQD 448

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              L H MVA ++ P+  TY  +++ LCK+R   EA  +   ++     PD  +    I 
Sbjct: 449 AIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAID 508

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G+C+ G L  AR ++  +  KGL P+ +TY+ MI+G CR   L+EA +L +EM + G   
Sbjct: 509 GMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTL 568

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               YNT+  G   +  T  A  L +EM  +G   D  T    ++    +G
Sbjct: 569 NGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKMLSDDG 619



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A   FN +      P TV +  ++  + KM        +  +M   G+ PN YT + +I+
Sbjct: 45  AISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILIN 104

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            +C ++ +  A  +  ++L  G+   T T+ TLI G+C+ G+  EA HLF++M  +G   
Sbjct: 105 SFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRP 164

Query: 408 DVITYNTLIQGYCKEG 423
           DV+TY TLI G CK G
Sbjct: 165 DVVTYGTLINGLCKVG 180



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 76/166 (45%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P    + +++  + K +       + + +   G  P+      +I+  C +  
Sbjct: 52  MLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNR 111

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +G A  +  +++  G  P+  T+ ++I G C    + EA  L  +M+ +G+    VTY T
Sbjct: 112 VGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIGEGFRPDVVTYGT 171

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC  G T  A  L   M QK    +V  YNT+I   CK+ ++
Sbjct: 172 LINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQV 217


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 145/292 (49%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E        T    L   +K+    LVW  Y +++E GY
Sbjct: 79  IXAYLESGFLRDAIECYRLTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN +I+G C+  +L++A  L  EM  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  B A+     M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVD 370



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F         P SL  +   +   C+ G
Sbjct: 97  LTREHKFXXPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDG 156

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G I++   D  ++L   +  SG         
Sbjct: 157 DIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYS 216

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L  GLVP    F  LI   C+        E+   M+++
Sbjct: 217 VLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 276

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  PD  TY  +I GLCK     +A  +  ++  +G  PD + YTT+I G CK G L  A
Sbjct: 277 SLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTA 336

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ + ML  G      TY  +I  
Sbjct: 337 FEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTYTMIINE 396

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            C  G   +   L +EM + G    V+TYN L+ G
Sbjct: 397 FCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 148/294 (50%), Gaps = 10/294 (3%)

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           +E  +    E G ++EA      ++  G+  + +  N  +L   ++   +    ++ ++ 
Sbjct: 177 VECMVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMS 236

Query: 201 ESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             G         Y+I  +C +G V E    + +++E G V +N     +I+ FCEK    
Sbjct: 237 ARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVN 296

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           R     H +     +P+   Y  +I+GLCK     +A+ +  ++ + G+ P+   +T++I
Sbjct: 297 RAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLI 356

Query: 312 HGLCKMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           HGLCK GW   A +++ ++I      PN +TY +MI GYC+ + L  A+ L + M ++G 
Sbjct: 357 HGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 416

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              T TY TLI G C  G   +AY L E M+ +G F +  TYN+++ G CK G+
Sbjct: 417 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGR 470



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 164/346 (47%), Gaps = 14/346 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++ FF  + +  G SP+L++ + +   L +  + K A + L+     G+ PN  +    I
Sbjct: 298 AVWFFHKV-TKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTSLI 356

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
             LC+ G  E AF  F KL     +  ++ T+ + + G  K ++      L+  + E G 
Sbjct: 357 HGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGL 416

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C  G  S+ YEL+  +  +G  P    +N ++   C++       +
Sbjct: 417 VPNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFK 476

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL+T        D  TY  +I+  CK     +A    N + + G+ PD  +YTT+I   C
Sbjct: 477 LLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFC 536

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           +   + D+ K++ E+I  GL P + TY SMI GYCR   +  A +  ++M D G    ++
Sbjct: 537 RQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSI 596

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +Y  LI+GLC   R DEA  L++ M  KG+    +T  TL   YCK
Sbjct: 597 SYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCK 642



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H+++E   ++  F   GK+ E  +++  +   GLV      N++I    E +       +
Sbjct: 174 HEVVEC--MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNV 231

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M AR   PD+ TY+ +I G C++   LEA R   ++ ERG+V D    T +I   C+
Sbjct: 232 FDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCE 291

Query: 317 MGWLGDARKMWF--EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
              +   R +WF  ++   GL PN   Y+SMI G C+  ++++A  L +EM+  G+    
Sbjct: 292 KSLVN--RAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNV 349

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
            T+ +LI GLC  G T+ A+ LF ++ +   ++ +V TY  +I GYCKE K+
Sbjct: 350 YTHTSLIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKL 401



 Score = 46.2 bits (108), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 24/82 (29%), Positives = 44/82 (53%)

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+  +  I  L+EA  +  +M ++G   TT   N +I         + A ++F+EM+ +G
Sbjct: 180 MVGVFAEIGKLKEAVDMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARG 239

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           ++ D  TY  +I GYC+ G ++
Sbjct: 240 VYPDSCTYKYIIVGYCRNGNVL 261


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 179/412 (43%), Gaps = 84/412 (20%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGL 153
           S  G  PD  S N +  SL      + A+D L       G SP+  S  + I  L   G 
Sbjct: 228 SELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLFMEGE 287

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWK------LYHDLIESGY 204
           I +A   F+++ + GV  ++ T+NS   AL     +D+ +LV +      +  D +    
Sbjct: 288 ISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTA 347

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I  +   G+  E  ++ +++  +GL+P+   FN L+   C+ K     +E+ H++  + 
Sbjct: 348 MIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKG 407

Query: 265 RAPDNFTYEEVINGLCKSRKRL-----------------------------------EAY 289
             PD  +Y  +++G     + +                                   EA 
Sbjct: 408 HKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEAL 467

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F +++ +G  P+ V Y TVI  LC+MG L DA +   +MI  GL PN   Y+S+I G+
Sbjct: 468 LIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGF 527

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTY-------------------------------- 377
           C   +L +AK L  EM+D+G     +T+                                
Sbjct: 528 CTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPD 587

Query: 378 ----NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               N+LI G CL G+ D+A+ + + M   G   DV+TY+TLI GY K G+I
Sbjct: 588 IFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRI 639



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 136/267 (50%), Gaps = 11/267 (4%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYE-L 221
           ++ T+   +  C +  R DL    +  L+ +G           ++  C   +  E    L
Sbjct: 164 TVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRTDEALSML 223

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFTYEEVINGLC 280
           L ++ E G VP+  ++N +I   C         ++L  M   +  +PD  +Y  VI+GL 
Sbjct: 224 LHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDGCSPDVVSYTMVIHGLF 283

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
              +  +A  +FN++ ++G VP+ V Y +++H LCK   +  A  +  +M    + P+E 
Sbjct: 284 MEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEV 343

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY +MIHGY  +   +EA ++ KEM  +G     VT+N+L+  LC H R+ EA  +F  +
Sbjct: 344 TYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSI 403

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
           A KG   D+I+Y+ L+ GY  EG+ V+
Sbjct: 404 ATKGHKPDIISYSILLHGYATEGRFVD 430



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 188/425 (44%), Gaps = 27/425 (6%)

Query: 11  ILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFN- 69
           +LRQ   N   P+       I        + E AK   ++TR      + L+ DI +FN 
Sbjct: 329 VLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTR------EGLIPDIVTFNS 382

Query: 70  FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL 129
             D L   +  K+   +  SI       +  G  PD++S ++L         F    +  
Sbjct: 383 LMDSLCKHKRSKEAAEIFHSI-------ATKGHKPDIISYSILLHGYATEGRFVDMNNLF 435

Query: 130 DS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
            S    G   + +   + I    + G+++EA   F++++  GV  ++ T+ + +    ++
Sbjct: 436 HSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRM 495

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV-PENTA 236
            R     +    +I  G          LIQ FC  G + +  EL+ ++++ G+  P  T 
Sbjct: 496 GRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITF 555

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           F+ +I   C +       ++ + ++     PD FT+  +I+G C   K  +A+ V + + 
Sbjct: 556 FSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMV 615

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  PD V Y+T+I+G  K G + D   ++ EM+ K + P   TY+ ++ G  R     
Sbjct: 616 SAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTS 675

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            AK++  EM++ G   +  TY  ++ GLC +  TDEA  LF ++    +  ++   NT+I
Sbjct: 676 AAKKMFHEMIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMI 735

Query: 417 QGYCK 421
               K
Sbjct: 736 HALYK 740



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 68/295 (23%), Positives = 140/295 (47%), Gaps = 11/295 (3%)

Query: 144 YIQCLCESGLIEEAFCAF-SKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH- 197
           +++CLC +   +EA      ++ E+G      ++N+ +       R+    D++ ++   
Sbjct: 206 FLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKG 265

Query: 198 -----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                D++    +I     +G++S+   L  ++++ G+VP    +N ++   C+ +   +
Sbjct: 266 DGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDK 325

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +L  M   +  PD  TY  +I+G     +  EA ++F ++   G +PD V + +++ 
Sbjct: 326 AELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMD 385

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            LCK     +A +++  +  KG  P+  +Y+ ++HGY       +   L   M D G   
Sbjct: 386 SLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVA 445

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +  +N LI      G  DEA  +F EM  +G+  +V+TY T+I   C+ G++ +
Sbjct: 446 DSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLAD 500



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 158/372 (42%), Gaps = 48/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N +  +L +ARA   A   L         P+  +    I      G  +EA
Sbjct: 302 GVVPNVVTYNSIVHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEA 361

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F ++   G+   I T+NS +    K  R+    +++H         D+I    L+  
Sbjct: 362 AKMFKEMTREGLIPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHG 421

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +G+  +   L   + ++G+V ++  FN LI+   ++        +   M  +  +P+
Sbjct: 422 YATEGRFVDMNNLFHSMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPN 481

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  VI  LC+  +  +A    + +   G  P+TV+Y ++I G C  G L  A+++  
Sbjct: 482 VVTYATVIAALCRMGRLADAMEKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVS 541

Query: 329 EM------------------------------------IHKGLLPNEYTYNSMIHGYCRI 352
           EM                                    IH G  P+ +T+NS+I GYC +
Sbjct: 542 EMMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLV 601

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +++A  +   M+  G     VTY+TLI G    GR D+   LF EM  K +    +TY
Sbjct: 602 GKMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTY 661

Query: 413 NTLIQGYCKEGK 424
           + ++ G  + G+
Sbjct: 662 SLVLDGLFRAGR 673



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 140/341 (41%), Gaps = 21/341 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEA--------RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
           G  P+     V++ SL++         +A ++  + +D     PN       I  LC  G
Sbjct: 512 GLKPN----TVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEG 567

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            +  A   F+ +  +G    I T+NS + G   + + D  + +   ++ +G         
Sbjct: 568 RVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYS 627

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI  +   G++ +G  L R++L   + P    ++ ++             ++ H M+  
Sbjct: 628 TLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIES 687

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             A    TY  ++ GLC++    EA  +F+ L       +  +  T+IH L K+    +A
Sbjct: 688 GTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEIAILNTMIHALYKVKRREEA 747

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++  +   GL+PN  TY  MI    +  ++EEA  +   M   G   ++   N +I  
Sbjct: 748 HDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSMEKTGCAPSSRLLNDIIRM 807

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           L   G   +A +   ++    I  +  T + LI  +  +G+
Sbjct: 808 LLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKGR 848


>gi|297734265|emb|CBI15512.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 171/376 (45%), Gaps = 31/376 (8%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------- 129
           R  L+ Q++   ++ FF W+ +  G  P   +  ++  +L  +R F  AM FL       
Sbjct: 105 RVLLRCQSDSFTALSFFNWVKNDLGLRPSTQNYCIVVHTLAWSRNFSQAMKFLCELVELV 164

Query: 130 ----DSTGFSPN-----------PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
                S     N           P   ++ ++     G + E   +F ++  +G   ++ 
Sbjct: 165 KDDLPSEDVFKNLILCTEDCNWDPVVFDMLVKAYLRMGRVREGLRSFRRMLRVGFVPTVI 224

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
           T N  L G +K++ TD  W++Y ++   G          L    C DG   +  + L ++
Sbjct: 225 TSNYLLNGLLKLNYTDRCWEVYEEMERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKM 284

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
            E+G  P+   +N LI+ +C K        L   M  R   PD  +Y  ++NGLCK  + 
Sbjct: 285 EEEGFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRV 344

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
            EA+++F+ +  RG  PD V Y T+IHG CK G + ++R +  +MI  G+ P+ +T   +
Sbjct: 345 REAHQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVL 404

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           + GY +      A  L  E+   G   +   Y+ LI  LC   R   A +L E M++ G 
Sbjct: 405 VEGYGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGH 464

Query: 406 FRDVITYNTLIQGYCK 421
             ++  YN LI+ +C+
Sbjct: 465 KPELEIYNELIKSFCQ 480



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 165/370 (44%), Gaps = 18/370 (4%)

Query: 72  DPLFFREFLK---QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKV 124
           DP+ F   +K   +   V   +R F+ +    GF P +++ N L + L++     R ++V
Sbjct: 187 DPVVFDMLVKAYLRMGRVREGLRSFRRM-LRVGFVPTVITSNYLLNGLLKLNYTDRCWEV 245

Query: 125 AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
             + ++  G +PN  +  +    LC+ G   +      K++E G    I T+N+ +    
Sbjct: 246 YEE-MERFGIAPNLYTFNILTHVLCKDGDTGKVNKFLEKMEEEGFDPDIVTYNTLINSYC 304

Query: 185 KIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           +  R D  + LY          DL+    L+   C +G+V E ++L  +++  GL P+  
Sbjct: 305 RKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREAHQLFHRMVHRGLSPDIV 364

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +N LI  +C++        LLH M+    +PD+FT   ++ G  K  K L A  +  +L
Sbjct: 365 TYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEGYGKEGKFLSALNLVVEL 424

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +  G      +Y+ +I  LC+      A+ +   M   G  P    YN +I  +C+ D +
Sbjct: 425 QRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPELEIYNELIKSFCQCDCI 484

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA  L  EM+DK       TY  +I  L    R+ E   L  EM   G+  D+     L
Sbjct: 485 AEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVGEMVASGMLPDLEICRAL 544

Query: 416 IQGYCKEGKI 425
             GYC+E  I
Sbjct: 545 FYGYCRENDI 554



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 68/325 (20%), Positives = 120/325 (36%), Gaps = 47/325 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ N L +S         A      +   G  P+  S    +  LC+ G + EA
Sbjct: 288 GFDPDIVTYNTLINSYCRKGRLDDAFYLYKIMYRRGVVPDLVSYTALMNGLCKEGRVREA 347

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
              F ++   G+   I T+N+ + G  K  +      L HD+I +G              
Sbjct: 348 HQLFHRMVHRGLSPDIVTYNTLIHGYCKEGKMQESRSLLHDMIWNGISPDSFTCWVLVEG 407

Query: 204 ------------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                         YLI A C + +      LL ++ +DG  PE
Sbjct: 408 YGKEGKFLSALNLVVELQRFGVSISQDIYSYLIVALCRENRPFAAKNLLERMSKDGHKPE 467

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N+LI  FC+         L   MV +   P+  TY  VI  L +  + +E   +  
Sbjct: 468 LEIYNELIKSFCQCDCIAEALLLKMEMVDKEIKPNLATYRAVIGCLSRLSRSMEGESLVG 527

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++   G +PD  +   + +G C+   +  A  +      +  + +  ++N++I       
Sbjct: 528 EMVASGMLPDLEICRALFYGYCRENDIDKAESLLSFFAKEFQIHDTESFNALIRITSAKG 587

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYN 378
           ++  +  +   ML  G     +T N
Sbjct: 588 DIARSLEIQDMMLKMGLLPNPLTCN 612


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG   +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 65  ITAYLESGFXRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 124

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 125 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 184

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G +P+ V +TT+I G C
Sbjct: 185 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRC 244

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++  M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 245 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 304

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 305 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 356



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 95  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 154

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 155 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 214

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GL+P    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 215 DDANELFDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTL 274

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 275 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 334

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML       T TY  +I   C  G   +   
Sbjct: 335 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSK 394

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 395 LLKEMQRDGHAPSVVTYNVLMNG 417


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 174/363 (47%), Gaps = 29/363 (7%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLEL 143
           L+I+FF W     G+  D+ S N L D LV++    R  KV  D L S G SPN  + ++
Sbjct: 9   LAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHS-GCSPNLVTFKI 67

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------ 197
            I+  C++G    A      L E  V   +  +N  + G  K    D   KL+       
Sbjct: 68  LIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSR 127

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG--LVPENTAFNKLI-SRFCEKKNFG 251
              D+     +I   C  G + +  ELL +++  G    P+   +N LI +  C+  +  
Sbjct: 128 VNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVE 187

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              E+L  M     APD  TY  +I+ LC + + +EA  +   LK     PD V + T++
Sbjct: 188 EALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEI---LKTMSCSPDLVTFNTLL 244

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G CK G L  A ++  EM  + +LP+  TY  +++G CR+  ++ A  L +E++ +GY 
Sbjct: 245 DGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYI 304

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI---------TYNTLIQGYCKE 422
              + Y +L+ GLC  G  +EA+ L +EM+ + I  +++         TYN ++ G  K+
Sbjct: 305 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKD 364

Query: 423 GKI 425
           G I
Sbjct: 365 GSI 367



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 158/345 (45%), Gaps = 25/345 (7%)

Query: 103 SPDLVSCNVLFDS-LVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
           +PD+V+ N L ++ + +    + A++ LD     G +P+  +    I  LC +G + EA 
Sbjct: 166 APDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAA 225

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
                LK M     + T+N+ L G  K        ++           D+I    L+   
Sbjct: 226 ---EILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGL 282

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR------ 263
           C  G+V   + LL +++  G +P+  A+  L+   C+        +L+  M AR      
Sbjct: 283 CRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEM 342

Query: 264 ---NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
              N  P  FTY  V+ GL K     +A  + +DL  RGYVPD V Y T+I GLCK   +
Sbjct: 343 VSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRV 402

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A  +  EM   G  PN+ T  S++ G CR+  +++A  L  EM  K +    V Y +L
Sbjct: 403 REACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSL 462

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I GLC   R D+A  + + M  +G+  D   Y  LI      G++
Sbjct: 463 IDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRV 507



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/333 (24%), Positives = 153/333 (45%), Gaps = 18/333 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G +PD+++ N +  +L  A     A + L +   SP+  +    +   C++G++  A   
Sbjct: 200 GPAPDVITYNSIIHALCVAGRVVEAAEILKTMSCSPDLVTFNTLLDGFCKAGMLPRALEV 259

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++    +   + T+   + G  ++ +  + + L  +++  GY         L+   C 
Sbjct: 260 LEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCK 319

Query: 212 DGKVSEGY---------ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
            G++ E +         E+L +++   +VP    +N ++    +  +  +   L+  +VA
Sbjct: 320 SGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 379

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R   PD  TY  +I+GLCK+ +  EA  + +++   G  P+ V   +V+ GLC++G + D
Sbjct: 380 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDD 439

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  EM  K   PN   Y S+I G C+ D +++A  +   M  +G       Y  LI 
Sbjct: 440 AWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAMRGQGVALDDFAYRKLIV 499

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            +   GR  EA  +++EM  +G   D  T  TL
Sbjct: 500 SMIHGGRVAEAMAMYDEMVARGFLPDGSTSKTL 532



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 107/203 (52%), Gaps = 3/203 (1%)

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           +DG   +  ++N L+    +  +  R  ++   ++    +P+  T++ +I G CK+ +  
Sbjct: 20  QDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAT 79

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
            A      L E    PD  ++  +IHGL K G    A K++  M    + P+ +TYN++I
Sbjct: 80  RALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVI 139

Query: 347 HGYCRIDNLEEAKRLHKEMLDKG--YGETTVTYNTLI-AGLCLHGRTDEAYHLFEEMAQK 403
            G C+  NLE+A+ L +EM+ +G       VTYNTLI AG+C  G  +EA  + + M   
Sbjct: 140 SGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLA 199

Query: 404 GIFRDVITYNTLIQGYCKEGKIV 426
           G   DVITYN++I   C  G++V
Sbjct: 200 GPAPDVITYNSIIHALCVAGRVV 222


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 156/328 (47%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L   + +A     A      +   G +P+  +   ++Q LC++G I++A
Sbjct: 274 GVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDA 333

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++E GV  +   + +                          LI A C +G V+ 
Sbjct: 334 VEMFEEMRERGVNPNTVVFTT--------------------------LIDAHCKEGNVAA 367

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G EL R++   G+  +  A+N L +  C  ++    ++++  M      PD  TY  +I+
Sbjct: 368 GLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLID 427

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK  +   A  +  ++ + G   D V YTT+I GL K G   D+ ++  EM+  GL P
Sbjct: 428 GFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEP 487

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  +I  +C+  +++   +L KEM +KG     VTYN ++ G C+ G+   A  L 
Sbjct: 488 DNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLL 547

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             M   G+  D ITYN L+ G+CK GK+
Sbjct: 548 NAMLNIGVCPDDITYNILLDGHCKHGKV 575



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 128/245 (52%), Gaps = 9/245 (3%)

Query: 192 VWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
            +  Y  L+++G          L++     GK++    +  ++L  G+ P    FN L+S
Sbjct: 228 AYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTLMS 287

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C+  +    + L   M     APD +TY   + GLCK+ +  +A  +F +++ERG  P
Sbjct: 288 GMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGVNP 347

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           +TV++TT+I   CK G +    ++  EM  +G+  +   YN++ +G CR+ +L+ A  + 
Sbjct: 348 NTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDLKAANDIV 407

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +EM + G     VTY TLI G C  G  D A  + +EM+ +G+  D +TY TLI G  K 
Sbjct: 408 EEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTLISGLSKS 467

Query: 423 GKIVN 427
           G+ V+
Sbjct: 468 GRSVD 472



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 150/322 (46%), Gaps = 12/322 (3%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           S+ EA AF   +  LD+ G  P      + ++ +  SG +  A   F ++   GV  ++ 
Sbjct: 224 SVPEAYAFY--LQLLDA-GVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVV 280

Query: 175 TWNSALLGCIKIDRTD-------LVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQV 225
           T+N+ + G  K    +       L+ K  +  D+   G  +Q  C  G++ +  E+  ++
Sbjct: 281 TFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEM 340

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
            E G+ P    F  LI   C++ N     EL   M  R    D   Y  + NGLC+ R  
Sbjct: 341 RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGLCRVRDL 400

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A  +  +++  G  PD V YTT+I G CK G L  A +M  EM  +G+  +E TY ++
Sbjct: 401 KAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTL 460

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I G  +     +++R+  EM++ G      TY  +I   C +      + L +EM  KG 
Sbjct: 461 ISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKGR 520

Query: 406 FRDVITYNTLIQGYCKEGKIVN 427
              V+TYN ++ G+C  G++ N
Sbjct: 521 KPGVVTYNVVMNGFCILGQMKN 542



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 42/75 (56%)

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R+ ++ EA   + ++LD G       +N L+  +   G+   A ++F+EM ++G+   V+
Sbjct: 221 RLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVV 280

Query: 411 TYNTLIQGYCKEGKI 425
           T+NTL+ G CK   +
Sbjct: 281 TFNTLMSGMCKASDL 295


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 161/338 (47%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+  S N+L  S    R    A+   + +      P+ ++  + + CLC++G+ E+A
Sbjct: 149 GIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKA 208

Query: 158 FCAFSKLKEMGVFGSIKTWNSALL-GCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           F  F ++  MG     +  ++A++   +K  R     +++  + + G+         +I 
Sbjct: 209 FEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMID 268

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G   E  ++L  +L    VP    +  L++  C+     R  EL   M A    P
Sbjct: 269 GLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRP 328

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           ++  Y  +I+G  KS +  EA  +F+++ E GY PD + +T +I GLCK G    A K +
Sbjct: 329 NSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSF 388

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G  PN  TY ++I G  +I  +  A R+ K M+  G    +VTY  L+ G C  
Sbjct: 389 EEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKL 448

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR DEA  L +E+ +     ++  Y++L+ G C  G +
Sbjct: 449 GRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSV 486



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 173/352 (49%), Gaps = 17/352 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELY 144
           +I FF+W     GF  D+ + N L + LV     ++ + +  + L + G +PN  S  + 
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKA-GIAPNTFSFNIL 160

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESG 203
           I+    +   ++A   F  +K       + T+   L+ C+ K    +  ++++H+++  G
Sbjct: 161 IRSFARTRRADDAVTCFEIMKRKRCKPDLHTF-LILVDCLCKAGMDEKAFEVFHEMMAMG 219

Query: 204 Y----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           +          +++      +V E  E+  Q+ + G  P+  A+N +I    +  +    
Sbjct: 220 FVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEA 279

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            ++L  M+A+   P   TY  ++N LCK+     A  +F  +   G+ P++V+YT++IHG
Sbjct: 280 LKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHG 339

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
             K G + +A  ++ EM+  G  P+  T+  MI G C+  N E+A +  +EM+  G    
Sbjct: 340 FAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPN 399

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            VTY T+I GL   GR   A+ + + M   G F D +TY  L+ G+CK G++
Sbjct: 400 VVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRL 451



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 178/411 (43%), Gaps = 86/411 (20%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+ V    L     ++   K A    D     G+ P+  +  + I  LC+SG  E+A
Sbjct: 325 GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQA 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
             +F ++   G   ++ T+ + + G  KI R    +++   +I  G          L+  
Sbjct: 385 AKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDG 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF------------------ 250
           FC  G++ E  +LL ++ +    P    ++ L++  C+  +                   
Sbjct: 445 FCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETL 504

Query: 251 ---------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRK-RLE-AYR 290
                          GR+ E   +   MV+    PD  TY  +INGLC+SR+ R+E A+ 
Sbjct: 505 DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFA 564

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM------------------------ 326
           + +DL++ GY+PD V YT +  GLCK+G +  A KM                        
Sbjct: 565 LLHDLEKVGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLC 624

Query: 327 -----------WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
                      + EM+ +G  P+   Y  +I+G  ++  LE+A +   EM+ KG   T  
Sbjct: 625 YQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVA 684

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
           TY  L+  LC  G  DEA+H FE M  +G +   V+ Y+ LI G+CK  K+
Sbjct: 685 TYTALVQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKV 735



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 157/332 (47%), Gaps = 16/332 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           SP+L   + L + L +  + +  +D L     +   + +P      I  LC++G ++EA 
Sbjct: 467 SPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEAC 526

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKI--DRTDLVWKLYHDLIESGYLIQA-------- 208
             F ++   G      T+N  + G  +   +R +  + L HDL + GYL  A        
Sbjct: 527 RIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCI 586

Query: 209 -FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G+V    ++L +    G   +  A+  L +  C +    R   L   MV +  AP
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +INGL K +K  +A + F+++  +G  P    YT ++  LC  G + +A   +
Sbjct: 647 DAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 328 FEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             M+ +G L+ +   Y+++IHG+C+   ++ A +L ++M+ +G   T VT  +L  GL  
Sbjct: 707 ESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            G+T++A  L +EMA  G      T+  ++ G
Sbjct: 767 SGKTEKAQELLQEMAAGGSPPHAATFTAILDG 798



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 151/361 (41%), Gaps = 17/361 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSP 136
           L +   V  + R  + + +H  F PD V+   L D   +      A   +D LD    SP
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSP 468

Query: 137 NPNSLELYIQCLCESGLIEEAFC-AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           N       +  LC+ G +E+     F + K            S ++G  K  R D   ++
Sbjct: 469 NLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 196 YHDLIESG---------YLIQAFCN--DGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           +  ++  G          LI   C   + +V   + LL  + + G +P+   +  L    
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGL 588

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+     R  ++L    +R    D   Y  +  GLC   +   A  +F ++  +G  PD 
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y  +I+GL K+  L DA K + EMI KG  P   TY +++   C   N++EA    + 
Sbjct: 649 AAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFES 708

Query: 365 MLDKG-YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ML +G    + + Y+ LI G C   + D A  LFE+M  +G     +T  +L  G  + G
Sbjct: 709 MLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSG 768

Query: 424 K 424
           K
Sbjct: 769 K 769



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 121/280 (43%), Gaps = 15/280 (5%)

Query: 131 STGFSPNPNSLELYIQCLCES--GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           S G  P+  +  + I  LC S    +E AF     L+++G      T+    +G  KI  
Sbjct: 534 SEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPLCIGLCKIGE 593

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D   K+  +    G+         L    C  G+V     L ++++  G  P+  A+  
Sbjct: 594 VDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCC 653

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +I+   + K      +    M+ + + P   TY  ++  LC +    EA+  F  +  RG
Sbjct: 654 IINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFESMLARG 713

Query: 300 YVPDTVM-YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
            +  +VM Y  +IHG CK   +  A K++ +MI +G +P   T  S+  G  R    E+A
Sbjct: 714 ELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKA 773

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           + L +EM   G      T+  ++ GL    ++DE+  L +
Sbjct: 774 QELLQEMAAGGSPPHAATFTAILDGL---RKSDESGKLLK 810



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 119/291 (40%), Gaps = 16/291 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF-----LDSTGFSPNPNSLEL 143
           + R FQ + S  G  PD  + N+L + L  +R  +V   F     L+  G+ P+  +   
Sbjct: 525 ACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTP 583

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
               LC+ G ++ A     +    G    +  + +   G     + D    L+ +++  G
Sbjct: 584 LCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG 643

Query: 204 ---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     +I       K+ +  +   +++  G  P    +  L+   C   N     
Sbjct: 644 GAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAF 703

Query: 255 ELLHTMVARNRAPDN-FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
               +M+AR     +   Y+ +I+G CK+ K   A ++F D+  RG VP  V   ++  G
Sbjct: 704 HRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDG 763

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           L + G    A+++  EM   G  P+  T+ +++ G  + D   +  +L +E
Sbjct: 764 LVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 175/365 (47%), Gaps = 24/365 (6%)

Query: 74  LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF----L 129
           LF ++FL+         R F  LHS   F   +             ++F++++++    +
Sbjct: 206 LFLKDFLQS--------RLFNVLHS---FKILIEYHKTFIKQKCLLKSFEISIEYTPPKI 254

Query: 130 DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
              G+ P+  +L  +I+  C  G I +A     K+  MG      ++ + + G  K+  T
Sbjct: 255 LKNGYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGET 314

Query: 190 DLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
               +L           D++    +I   C D  V++ ++L  + +   + P+   +N L
Sbjct: 315 KAALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNAL 374

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           IS FC         +L + M ++N  PD +T+  +++G CK     EA  V   + ++  
Sbjct: 375 ISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSI 434

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD V Y++++ G C +  +  A  ++  M H+G+  N  +YN MI+G+C+I  ++EA +
Sbjct: 435 KPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMK 494

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L KEM  K      +TY++LI GLC  GR   A  L +EM  +G   D+ITYN+++   C
Sbjct: 495 LFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALC 554

Query: 421 KEGKI 425
           K+  +
Sbjct: 555 KKHHV 559



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 97/347 (27%), Positives = 170/347 (48%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           Q LH H      GF  D VS   L + L +    K A++ L   D     P+       I
Sbjct: 281 QALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAALELLRRNDGKLVQPDVVMYNTII 340

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CI--KI-DRTDLVWKLYH---- 197
             +C+   + +AF  +S+     +F  + T+N+ + G CI  K+ D  DL  K+      
Sbjct: 341 DGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNII 400

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D+     L+  FC DG + E   +L  +++  + P+   ++ L+  +C      +   +
Sbjct: 401 PDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESI 460

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            +TM  R    +  +Y  +ING CK +   EA ++F ++  +   PD + Y+++I GLCK
Sbjct: 461 FNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCK 520

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A ++  EM ++G  P+  TYNS++   C+  ++++A  L  ++  +G      T
Sbjct: 521 SGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNT 580

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           Y  L+ GLC  G+ ++A  +FE++  KG   DV  Y  +IQG+C +G
Sbjct: 581 YTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKG 627



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 138/315 (43%), Gaps = 12/315 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N L          K A+D  +   S    P+  +  + +   C+ G I+EA   
Sbjct: 366 PDVFTYNALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNV 425

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            + + +  +   + T++S + G   ++  +    +++ +   G          +I  FC 
Sbjct: 426 LAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCK 485

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              V E  +L +++    + P+   ++ LI   C+        EL+  M  R + PD  T
Sbjct: 486 IKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIIT 545

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++ LCK     +A  +   LK +G  PD   YT ++ GLC+ G L DARK++ +++
Sbjct: 546 YNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLL 605

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG   + Y Y  MI G+C     +EA  L  +M + G      TY  +I  L      D
Sbjct: 606 VKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDEND 665

Query: 392 EAYHLFEEMAQKGIF 406
            A  L  EM  +G+ 
Sbjct: 666 MAEKLLREMIMRGLL 680



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+ +  +L   L ++     A KV  D L   G++ +  +  + IQ  C+ GL +E
Sbjct: 573 GIRPDMNTYTILVKGLCQSGKLEDARKVFEDLL-VKGYNLDVYAYTVMIQGFCDKGLFDE 631

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
           A    SK++E G     KT+   +L   + D  D+  KL  ++I  G L+
Sbjct: 632 ALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLLV 681


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 174/371 (46%), Gaps = 16/371 (4%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           + ++ +N PL +  F K      LS++    L    G SP + + N     L +      
Sbjct: 302 VSAYTYN-PLIYGYFNKGMLAEALSLQEEMVLK---GASPTVATYNSFIYGLCKLGRMSD 357

Query: 125 AMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           AM  L    +    P+  S    I   C  G + +AF  F +L+ + +F +I T+N+ L 
Sbjct: 358 AMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLD 417

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  +    ++  +L  ++I  G          L+   C  G +S   E   ++L +GL  
Sbjct: 418 GLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLEL 477

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           ++ A+   I    +  +  R   L   M+A+   PD   Y  V++GLCK     EA  + 
Sbjct: 478 DSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELL 537

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
             +   G +PD V YT++IH   + G L   R++++EM+ KGL P+  TY  +IHG+   
Sbjct: 538 QKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGK 597

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             LE A     EM +KG     +TYN+LI GLC   R D+AY+ F EM +KGIF +  +Y
Sbjct: 598 GRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSY 657

Query: 413 NTLIQGYCKEG 423
             LI   C  G
Sbjct: 658 TILINENCNMG 668



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 29/382 (7%)

Query: 72  DP-LFFREFLKQQNNVLLSIRFFQWLHSHYGFS-PDLVSCNVL---------------FD 114
           DP LF R     + +  +++R F+W  S  GF   + V C +L                +
Sbjct: 80  DPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVME 139

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNS--LELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
            ++ A   ++ +D L     S   +   L+L I    +  ++E+    F K+ +  +   
Sbjct: 140 RVINANMHRI-VDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPD 198

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
           +K  N  L      D      ++Y  + E G          L+ ++C  GKV +G +LL 
Sbjct: 199 VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLS 258

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++   G  P +  +N LI+   +K  F +   L+  M+        +TY  +I G     
Sbjct: 259 EMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKG 318

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
              EA  +  ++  +G  P    Y + I+GLCK+G + DA +   +M+   LLP+  +YN
Sbjct: 319 MLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYN 378

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++I+GYCR+ NL +A  L  E+       T VTYNTL+ GLC  G  + A  L  EM  +
Sbjct: 379 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 438

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           GI  D++TY  L+ G CK G +
Sbjct: 439 GIAPDIVTYTILVNGSCKMGSL 460



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 162/339 (47%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
            +G  P +V+ N L DS  +    +  +D L      G +PN  +  + I  L + G  E
Sbjct: 227 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFE 286

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A     ++ + G+  S  T+N  + G            L  +++  G           I
Sbjct: 287 QAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFI 346

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G++S+  + L  +L + L+P+  ++N LI  +C   N  +   L   + +    
Sbjct: 347 YGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLF 406

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY  +++GLC+  +   A ++  ++   G  PD V YT +++G CKMG L  A++ 
Sbjct: 407 PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEF 466

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM+H+GL  + Y Y + I G  ++ +   A  L +EML KG+    + YN ++ GLC 
Sbjct: 467 FDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCK 526

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  +EA  L ++M   G+  D +TY ++I  + + G++
Sbjct: 527 LGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRL 565



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 173/396 (43%), Gaps = 42/396 (10%)

Query: 40  YTEIAKQVCKITRTKPRWEQ-------TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           Y      +CK+ R     +Q        LL D+ S+N     + R       N++ +   
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR-----LGNLMKAFLL 396

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLC 149
           F  L S Y F P +V+ N L D L      +VA      + + G +P+  +  + +   C
Sbjct: 397 FDELRSIYLF-PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 455

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           + G +  A   F ++   G+      + + ++G +K+                       
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKL----------------------- 492

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G  S  + L  ++L  G  P+   +N ++   C+  N    SELL  MV+    PD 
Sbjct: 493 ---GDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDY 549

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+   ++ +  +   +F ++  +G  P  V YT +IHG    G L  A   + E
Sbjct: 550 VTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSE 609

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KG+LPN  TYNS+I+G C++  +++A     EM++KG      +Y  LI   C  G 
Sbjct: 610 MQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGN 669

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  L+++M  +G+  D  T++ L++   K+ K+
Sbjct: 670 WQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKL 705


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/416 (27%), Positives = 195/416 (46%), Gaps = 28/416 (6%)

Query: 23  NTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQ 82
           NT +++L  +++ SQ+    + +   +  R  P        D+ SFN     FF+     
Sbjct: 231 NTVIKSLCGDSR-SQEALDMVQRMAKEGGRCSP--------DVVSFNTVIHGFFK----- 276

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPN 139
           Q  V  +      +    G  PD+V+ N + D+L +ARA   A   +  +   G  P+  
Sbjct: 277 QGEVSKACNLINEM-VQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGL 335

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-- 197
           +    I     SG  +E+   F K+   G+   I T+NS +    K  R+    +++   
Sbjct: 336 TYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYM 395

Query: 198 -------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                  DL+    L+  +  +G+ ++   L   + + G+V     FN LIS   ++   
Sbjct: 396 TTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMM 455

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                +   M  +   PD  TY  +I+  C+  +  +A   F+ +   G  P+TV+Y ++
Sbjct: 456 DEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSL 515

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGL-LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           IHG C  G L  A+++  EM+ KG+  PN   ++S+IH  C    + +A  +   ++  G
Sbjct: 516 IHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIG 575

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              T VT+N+LI G CL G+ ++A+ + + M   GI  DV+TYNTL+ GYCK GKI
Sbjct: 576 DRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYCKSGKI 631



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 158/334 (47%), Gaps = 31/334 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
            FQ++ +  G  PDLVS ++L         F    +   S    G   N +   + I   
Sbjct: 391 IFQYMTTK-GHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
            + G+++EA   F++++  GV   + T+++                          LI A
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYST--------------------------LISA 483

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-P 267
           FC  G++++  E   Q++  GL P    ++ LI  FC   +  +  EL+  M+++    P
Sbjct: 484 FCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRP 543

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  +I+ LC   + ++A+ VFN +   G  P  V + ++I G C +G +  A  + 
Sbjct: 544 NIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVL 603

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  G+ P+  TYN+++ GYC+   +++   L +EML K    TTVTY+ ++ GL   
Sbjct: 604 DAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHA 663

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           GRT  A  +F EM   G   D+ TY  L++G C+
Sbjct: 664 GRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 697



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 75/296 (25%), Positives = 146/296 (49%), Gaps = 12/296 (4%)

Query: 144 YIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH- 197
           +++CLC +   +EA      ++ ++G   +  ++N+ +       R+    D+V ++   
Sbjct: 197 FLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKE 256

Query: 198 ------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                 D++    +I  F   G+VS+   L+ ++++ G+ P+   +N ++   C+ +   
Sbjct: 257 GGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMD 316

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +   +L  MV +   PD  TY  +I+G   S    E+ ++F  +  +G +P  V + + +
Sbjct: 317 KAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFM 376

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             LCK G   DA +++  M  KG +P+  +Y+ ++HGY       +   L   M DKG  
Sbjct: 377 SSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIV 436

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
                +N LI+     G  DEA  +F EM  +G+  DV+TY+TLI  +C+ G++ +
Sbjct: 437 ANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLAD 492



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G     +  N     L  A+    A+D L       G  PN  S    I+ LC     +E
Sbjct: 186 GLRTRTIEANTFLKCLCHAKRTDEAVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQE 245

Query: 157 AFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           A     ++ + G   S  + ++N+ + G  K         L +++++ G          +
Sbjct: 246 ALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSI 305

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + A C    + +   +LRQ+++ G+ P+   +  +I  +    ++   +++   M ++  
Sbjct: 306 VDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGL 365

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   T+   ++ LCK  +  +A  +F  +  +G++PD V Y+ ++HG    G   D   
Sbjct: 366 IPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNN 425

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M  KG++ N + +N +I  + +   ++EA  +  EM  +G     VTY+TLI+  C
Sbjct: 426 LFHSMADKGIVANCHCFNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFC 485

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             GR  +A   F +M   G+  + + Y++LI G+C  G +V
Sbjct: 486 RMGRLADAMEKFSQMISIGLEPNTVVYHSLIHGFCMHGDLV 526



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 161/345 (46%), Gaps = 15/345 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-----FSPNPNSLELYIQCLCESG 152
           S  G  P+ +S N +  SL      + A+D +          SP+  S    I    + G
Sbjct: 219 SDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQG 278

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWK------LYHDLIESG 203
            + +A    +++ + GV   + T+NS   AL     +D+ +LV +      +  D +   
Sbjct: 279 EVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYT 338

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I  +   G   E  ++ R++   GL+P    FN  +S  C+        E+   M  +
Sbjct: 339 AIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTK 398

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  +Y  +++G     +  +   +F+ + ++G V +   +  +I    K G + +A
Sbjct: 399 GHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEA 458

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ EM  +G+ P+  TY+++I  +CR+  L +A     +M+  G    TV Y++LI G
Sbjct: 459 MLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVYHSLIHG 518

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKIVN 427
            C+HG   +A  L  EM  KGI R +++ ++++I   C EG++++
Sbjct: 519 FCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRVMD 563



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 146/367 (39%), Gaps = 54/367 (14%)

Query: 113 FDSLVEARAFKVAMDF-------LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           F+ L+ A A +  MD        +   G  P+  +    I   C  G + +A   FS++ 
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 166 EMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY----------LIQAFCNDGK 214
            +G+  +   ++S + G C+  D      +L  +++  G           +I + CN+G+
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVK-AKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGR 560

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V + +++   V+  G  P    FN LI  +C      +   +L  MV+    PD  TY  
Sbjct: 561 VMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNT 620

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++G CKS K  +   +F ++  +   P TV Y+ V+ GL   G    A+KM+ EMI  G
Sbjct: 621 LVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSG 680

Query: 335 LLPNEYTYNSMIHGYCRID-----------------------------------NLEEAK 359
              +  TY  ++ G CR D                                     EEA 
Sbjct: 681 TAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEAN 740

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L   +   G      TY  +I  L   G  +EA  +F  M + G        N +I+  
Sbjct: 741 DLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 800

Query: 420 CKEGKIV 426
            ++G IV
Sbjct: 801 LQKGDIV 807



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 130/300 (43%), Gaps = 11/300 (3%)

Query: 136 PNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
           P PN +     I  LC  G + +A   F+ +  +G   +I T+NS + G   + + +  +
Sbjct: 541 PRPNIVFFSSIIHSLCNEGRVMDAHDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAF 600

Query: 194 KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            +   ++  G          L+  +C  GK+ +G  L R++L   + P    ++ ++   
Sbjct: 601 GVLDAMVSVGIEPDVVTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGL 660

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
                     ++ H M+    A D  TY+ ++ GLC++    EA  +F+ L       D 
Sbjct: 661 FHAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDI 720

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +  TVI+ L K+    +A  ++  +   GL+PN  TY  MIH   +  ++EEA  +   
Sbjct: 721 TILNTVINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSS 780

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M   G   ++   N +I  L   G   +A +   ++    I  +  T + L+  +  +GK
Sbjct: 781 MEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGK 840



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH-LFE 398
           +TY  ++   CR    +        +L  G    T+  NT +  LC   RTDEA   L  
Sbjct: 157 HTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDEAVDVLLH 216

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGK 424
            M+  G   + I+YNT+I+  C + +
Sbjct: 217 RMSDLGCVPNAISYNTVIKSLCGDSR 242


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  L  G C+EG+ V+
Sbjct: 313 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVD 364



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/193 (21%), Positives = 77/193 (39%), Gaps = 30/193 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D     G  P+ 
Sbjct: 253 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDK 311

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +                 I++D           
Sbjct: 312 ITYTTLIDGCCKEGDLDSAFEHRKRMIQEN---------------IRLDE---------- 346

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +    L    C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +  + S+LL 
Sbjct: 347 -VAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 405

Query: 259 TMVARNRAPDNFT 271
            M      P   T
Sbjct: 406 EMQRDGHVPSVVT 418


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 154/317 (48%), Gaps = 10/317 (3%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           R++   ++ LDS G+ PN     + +   C+ G +  A   F ++ + G+  ++ ++N+ 
Sbjct: 125 RSWAFYLEVLDS-GYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTL 183

Query: 180 LLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230
           + GC K    +  ++L           D+     LI   C +G++ EG  L  ++   GL
Sbjct: 184 ISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGL 243

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           VP    F  LI   C+        +    M+A+   PD  TY  +INGLCK     EA R
Sbjct: 244 VPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARR 303

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           + N++   G  PD + +TT+I G CK G +  A ++   M+ +G+  ++  +  +I G C
Sbjct: 304 LVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLC 363

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R   + +A+R+ ++ML  G+     TY  ++   C  G     + L +EM   G    V+
Sbjct: 364 RDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVV 423

Query: 411 TYNTLIQGYCKEGKIVN 427
           TYN L+ G CK+G++ N
Sbjct: 424 TYNALMNGLCKQGQVKN 440



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 40/71 (56%)

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           LE +   + E+LD GY      +N L+ G C  G    A  +F+E+ ++G+   V+++NT
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 415 LIQGYCKEGKI 425
           LI G CK G +
Sbjct: 183 LISGCCKAGAV 193


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G +P+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++  M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 259 KNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKGLKPDKF 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q  I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVD 370



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ R FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GL+P    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DDANELFDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A K    MI   +
Sbjct: 289 IYGLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRNGHVPSVVTYNVLMNG 431


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 101/341 (29%), Positives = 166/341 (48%), Gaps = 13/341 (3%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           R  + +    G SP++V+ + L   L  A    +A++V    +   G SPN  +    ++
Sbjct: 366 RHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTYAFLLE 425

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD--LVWKLYHDLIESGY 204
            LC++G        F ++ E       + W S+    I     D  +V      L+    
Sbjct: 426 GLCKAGDSRRLEQCFEQMLE-------REWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNT 478

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+      G V +   LL  ++E GL P+   FN ++   C+++       +    + R 
Sbjct: 479 LVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 538

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +I+GL K  K  EA ++   + E G   +TV Y+TV+ GL K+G + DA 
Sbjct: 539 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 598

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M   G LP+  TYN++I G+ +   L EA  L +EML+ G+  + VTY TL  GL
Sbjct: 599 VVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGL 658

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR DEA  + + MA +G   + ITY++++ G CK G++
Sbjct: 659 CRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRV 699



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 159/342 (46%), Gaps = 21/342 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEAR-------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           G SPD+++ N + D L + +        FK A++     G  PN  +    I  L +   
Sbjct: 503 GLSPDVITFNSVLDGLCKEQRILDAHNVFKRALE----RGCRPNVVTYSTLIDGLSKMAK 558

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------Y 204
           ++EA    +K+ E+G   +  T+++ + G +K+ R +    +   + ++G          
Sbjct: 559 MDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNT 618

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  F    ++ E   LLR++LE G  P    +  L    C    F    E+L  M AR 
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDA 323
            AP+  TY  +++GLCK+ +  EA   F  + ++    P  + Y+ +I GLCK G + +A
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEA 738

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI  G +P+  T++ +I+G C    ++    L   M ++G       YN +I  
Sbjct: 739 YEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINA 798

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            CL G    AY L EEM   GI ++ +T+  +I+  C   +I
Sbjct: 799 YCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRI 840



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 174/368 (47%), Gaps = 36/368 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCL 148
           FFQ +    GF+PD V+ N + D L +A   + A   +  L  +  SP   +  + +  L
Sbjct: 163 FFQQVL-LIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGL 221

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------LIES 202
            ++G +  A+  F  + + GV  +  T+++ + G  K  + D+   L  D      +   
Sbjct: 222 SKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLLRDKNSQAGMFAF 281

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             L+   C   ++ E  +LL+ +     VP    FN L++  C+ +      EL   M  
Sbjct: 282 SSLLHGLCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKE 338

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKMGWLG 321
              + D  TY  ++ GLCK R+  EAYR    ++   G  P+ V ++T+I GLC  G + 
Sbjct: 339 SGCSADVITYNILLKGLCKLRRIPEAYRHVELMRRTEGCSPNVVTFSTLIQGLCNAGRVN 398

Query: 322 DARKMWFEMIH-KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-------- 372
            A +++  M+  +G+ PN +TY  ++ G C+  +    ++  ++ML++ +          
Sbjct: 399 QAWEVYERMVAVEGISPNRFTYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHS 458

Query: 373 -------------TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
                        T VTYNTL+ GL   G   +A  L E M + G+  DVIT+N+++ G 
Sbjct: 459 PEVDFLMVQVCRPTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGL 518

Query: 420 CKEGKIVN 427
           CKE +I++
Sbjct: 519 CKEQRILD 526



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 155/339 (45%), Gaps = 18/339 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
            +GF P +V+ + + D L            L+     G +PN  +    +  L   G  +
Sbjct: 29  QFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAK 88

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           EAF    ++   G    + T+   + G  K    +  +++  ++++ G+         L+
Sbjct: 89  EAFSLLERMAANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLL 148

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            A C  G+V E +   +QVL  G  P+   +N ++    +         +L  +     +
Sbjct: 149 HALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSS 208

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P  FT+   ++GL K+     AY  F+ + + G  P+TV Y  +I GLCK G L  A  +
Sbjct: 209 PTVFTFTIAVDGLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGL 268

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +   K      + ++S++HG C+   LEEA +L K M         V +N+L+ GLC 
Sbjct: 269 LRD---KNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAM---PCVPNVVCFNSLMNGLCQ 322

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             R DEA+ LF+ M + G   DVITYN L++G CK  +I
Sbjct: 323 ARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRI 361



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 152/332 (45%), Gaps = 21/332 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ + L D L +      A+  L      G   N  +    +  L + G +E+A
Sbjct: 538 GCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDA 597

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++++ G      T+N+ + G  K  R      L  +++E+G+         L   
Sbjct: 598 VVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHG 657

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNR- 265
            C  G+  E  E+L  +   G  P    ++ ++   C+    GRV+E L     +AR+  
Sbjct: 658 LCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKA---GRVTEALGYFEKMARDEV 714

Query: 266 -APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP    Y  +I+GLCK+ +  EAY     +   G +PD V ++ +I+GLC  G +    
Sbjct: 715 VAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGL 774

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++  M  +G   + Y YN+MI+ YC       A  L +EM   G  + TVT+  +I  L
Sbjct: 775 ELFCGMAERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKAL 834

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           C + R DEA   F  + +    RD I+YNTLI
Sbjct: 835 CGNDRIDEAVSYFHSIPED--CRDEISYNTLI 864



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/283 (27%), Positives = 136/283 (48%), Gaps = 26/283 (9%)

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           + I  LC++G + +AF AF K  + G   ++ T+++                        
Sbjct: 6   VLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYST------------------------ 41

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C D +V +G +LL ++   G  P    +N L++    +        LL  M A
Sbjct: 42  --VIDGLCRDNEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAA 99

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               P+  T+  +I GLCK  +   A+RV +++ +RG+VPD  ++T ++H LC++G + +
Sbjct: 100 NGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDE 159

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A   + +++  G  P+  TYN+M+ G  +   LE A  + + + +     T  T+   + 
Sbjct: 160 AWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVD 219

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GL   G    AY  F+ M Q G+  + +TY+ LI G CK GK+
Sbjct: 220 GLSKAGNLTGAYEFFDSMPQTGVSPNTVTYDALIDGLCKAGKL 262



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/359 (25%), Positives = 167/359 (46%), Gaps = 19/359 (5%)

Query: 80   LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSP 136
            L +   V  ++ +F+ +      +P +++ + L D L +A     A +FL+     G  P
Sbjct: 693  LCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIP 752

Query: 137  NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKL 195
            +  +  + I  LC++G I+     F  + E G    I  +N+ +   C+K + +   + L
Sbjct: 753  DVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFS-AAYAL 811

Query: 196  YHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              ++         +  G +I+A C + ++ E       + ED    +  ++N LI+    
Sbjct: 812  LEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPED--CRDEISYNTLITSLVA 869

Query: 247  KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             +   +  ELL  MVA   +PD   Y  V++GL K+     A ++  +++ RG+ PD   
Sbjct: 870  SRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRT 929

Query: 307  YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
            YT +I GL K   L  A   + EM+ K L P+   Y+S+I  +C+ D +++A +L +   
Sbjct: 930  YTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLRS-- 987

Query: 367  DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G   T   Y+T++  LC +  TD+A  +  EM  K     +  + +L   Y  EG++
Sbjct: 988  -SGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRV 1045



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 120/281 (42%), Gaps = 19/281 (6%)

Query: 98   SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
            +  G   D+ + N + ++      F  A   L+   + G + N  +  + I+ LC +  I
Sbjct: 781  AERGCKADIYAYNAMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRI 840

Query: 155  EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
            +EA   F  + E      I ++N+ +   +   R++   +L   ++  G    A CN   
Sbjct: 841  DEAVSYFHSIPE-DCRDEI-SYNTLITSLVASRRSEQALELLRAMVADGGSPDA-CNYMT 897

Query: 215  VSEGY----------ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            V +G           +LL+++   G  P+   +  +IS   + K      +    M+ +N
Sbjct: 898  VMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKN 957

Query: 265  RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              PD   Y  +I+  CK+ K  +A+++   L+  G  P   MY+T++  LCK      A 
Sbjct: 958  LKPDAIVYSSLIDAFCKADKVDDAWKL---LRSSGIEPTITMYSTMVDSLCKNRGTDKAL 1014

Query: 325  KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            ++  EM  K   P  + + S+   Y     ++EA +L  ++
Sbjct: 1015 EVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLVNDL 1055


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 60  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 119

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K   A  +F+++  +G VP+ V +TT+I G C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 299

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 300 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 351



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 90  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 149

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 150 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 209

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                L  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 210 DGANGLFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 269

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 270 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 329

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  ++   C  G   +   
Sbjct: 330 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSK 389

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 390 LLKEMQRDGHAPSVVTYNVLMNG 412


>gi|225464790|ref|XP_002268064.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial [Vitis vinifera]
          Length = 817

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 155/326 (47%), Gaps = 29/326 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P ++SCN L + L+E     +A+     L   G +PN  +  ++I+ LC  G  EEA
Sbjct: 187 GFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEA 246

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++E GV  +  T ++ + G     R+DL                          
Sbjct: 247 VDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDL-------------------------- 280

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           GYE LR +       +  A+  +I  FC +       ++   MV    APD + Y  +I+
Sbjct: 281 GYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIH 340

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
             CK+   L+A  + ND+   G   + V+ ++++  LC+MG   +    + E    G+  
Sbjct: 341 AYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIFL 400

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +E  YN ++   C++  +EEA  L  EM  +      V Y TLIAG CL G+  +A ++F
Sbjct: 401 DEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMF 460

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
           EEM ++GI  D++TYN L+ G+ + G
Sbjct: 461 EEMKERGIEPDIVTYNILVGGFSRNG 486



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/352 (28%), Positives = 163/352 (46%), Gaps = 31/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N+L          K A++ LD   + G  PN  +    I+ LC +G ++EA
Sbjct: 467 GIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEA 526

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ---------A 208
               + L++      ++ +++ + G  K + T   ++L+  L + G L++         +
Sbjct: 527 EAFLNTLED----KCLENYSAMVDGYCKANFTRKAYELFSRLSKQGILVKKKSCFKLLSS 582

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+  +   LL ++L   + P    + KLI  FC   +  R   +   +V R   PD
Sbjct: 583 LCMEGEYDKALILLERMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPD 642

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG------- 321
             TY  +ING C+     EA  +FND+KERG  PD + YT V+ G  K+           
Sbjct: 643 VITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKVNLKMARSLQFS 702

Query: 322 --------DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
                   DA   W EM   G+ P+   Y  +I  +C+ +NL++A  L+ EM+ +G    
Sbjct: 703 KGSEEEKMDASPFWSEMKEMGIKPDVVCYTVLIDSHCKTNNLQDAINLYDEMIARGLQPD 762

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            VTY  L++  C  G  D A  L  EM+ KGI  D    + L +G  K  K+
Sbjct: 763 IVTYTALLSSCCSRGDMDRAITLVNEMSFKGIEPDSRAMSVLHRGILKARKV 814



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 129/296 (43%), Gaps = 9/296 (3%)

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL- 199
           L++ ++     G+ +EA  A  + K  G    I + N  +   I+  + D+   +Y  L 
Sbjct: 160 LDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLK 219

Query: 200 --------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                      G  I+A C  G   E  ++ R++ E G+ P     +  I   C  K   
Sbjct: 220 RLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSD 279

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              E L  + A N   D F Y  VI G C   K  EA  VF D+   G  PD  +Y  +I
Sbjct: 280 LGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALI 339

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           H  CK G L  A  +  +M+  G+  N    +S++   C +    E     KE  D G  
Sbjct: 340 HAYCKAGNLLQAVALHNDMVSNGIKTNCVIVSSILQCLCEMGMASEVVDQFKEFRDSGIF 399

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              V YN ++  LC  G+ +EA  L  EM  + +  DV+ Y TLI GYC +GK+V+
Sbjct: 400 LDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVD 455


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/371 (29%), Positives = 174/371 (46%), Gaps = 16/371 (4%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           + ++ +N PL +  F K      LS++    L    G SP + + N     L +      
Sbjct: 302 VSAYTYN-PLIYGYFNKGMLAEALSLQEEMVLK---GASPTVATYNSFIYGLCKLGRMSD 357

Query: 125 AMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           AM  L    +    P+  S    I   C  G + +AF  F +L+ + +F +I T+N+ L 
Sbjct: 358 AMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLD 417

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  +    ++  +L  ++I  G          L+   C  G +S   E   ++L +GL  
Sbjct: 418 GLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLEL 477

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           ++ A+   I    +  +  R   L   M+A+   PD   Y  V++GLCK     EA  + 
Sbjct: 478 DSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELL 537

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
             +   G +PD V YT++IH   + G L   R++++EM+ KGL P+  TY  +IHG+   
Sbjct: 538 QKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGK 597

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             LE A     EM +KG     +TYN+LI GLC   R D+AY+ F EM +KGIF +  +Y
Sbjct: 598 GRLERAFIYFSEMQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSY 657

Query: 413 NTLIQGYCKEG 423
             LI   C  G
Sbjct: 658 TILINENCNMG 668



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 29/382 (7%)

Query: 72  DP-LFFREFLKQQNNVLLSIRFFQWLHSHYGFS-PDLVSCNVL---------------FD 114
           DP LF R     + +  +++R F+W  S  GF   + V C +L                +
Sbjct: 80  DPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVME 139

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNS--LELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
            ++ A   ++ +D L     S   +   L+L I    +  ++E+    F K+ +  +   
Sbjct: 140 RVINANMHRI-VDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPD 198

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
           +K  N  L      D      ++Y  + E G          L+ ++C  GKV +G +LL 
Sbjct: 199 VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLS 258

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++   G  P +  +N LI+   +K  F +   L+  M+        +TY  +I G     
Sbjct: 259 EMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKG 318

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
              EA  +  ++  +G  P    Y + I+GLCK+G + DA +   +M+   LLP+  +YN
Sbjct: 319 MLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYN 378

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++I+GYCR+ NL +A  L  E+       T VTYNTL+ GLC  G  + A  L  EM  +
Sbjct: 379 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 438

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           GI  D++TY  L+ G CK G +
Sbjct: 439 GIAPDIVTYTILVNGSCKMGSL 460



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 162/338 (47%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  P +V+ N L DS  +    +  +D L      G +PN  +  + I  L + G  E+
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 287

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A     ++ + G+  S  T+N  + G            L  +++  G           I 
Sbjct: 288 AKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVATYNSFIY 347

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G++S+  + L  +L + L+P+  ++N LI  +C   N  +   L   + +    P
Sbjct: 348 GLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFP 407

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +++GLC+  +   A ++  ++   G  PD V YT +++G CKMG L  A++ +
Sbjct: 408 TIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFF 467

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+H+GL  + Y Y + I G  ++ +   A  L +EML KG+    + YN ++ GLC  
Sbjct: 468 DEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKL 527

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  +EA  L ++M   G+  D +TY ++I  + + G++
Sbjct: 528 GNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRL 565



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 173/396 (43%), Gaps = 42/396 (10%)

Query: 40  YTEIAKQVCKITRTKPRWEQ-------TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           Y      +CK+ R     +Q        LL D+ S+N     + R       N++ +   
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCR-----LGNLMKAFLL 396

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLC 149
           F  L S Y F P +V+ N L D L      +VA      + + G +P+  +  + +   C
Sbjct: 397 FDELRSIYLF-PTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSC 455

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           + G +  A   F ++   G+      + + ++G +K+                       
Sbjct: 456 KMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKL----------------------- 492

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G  S  + L  ++L  G  P+   +N ++   C+  N    SELL  MV+    PD 
Sbjct: 493 ---GDTSRAFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDY 549

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+   ++ +  +   +F ++  +G  P  V YT +IHG    G L  A   + E
Sbjct: 550 VTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSE 609

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KG+LPN  TYNS+I+G C++  +++A     EM++KG      +Y  LI   C  G 
Sbjct: 610 MQEKGILPNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGN 669

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  L+++M  +G+  D  T++ L++   K+ K+
Sbjct: 670 WQEALSLYKQMLDRGVQPDSCTHSALLKQLGKDCKL 705


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 10/326 (3%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
           N   + LV A     A+         PN  +    I  LC++G +++A+    ++++ G+
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI 61

Query: 170 FGSIKTWNSALLGCIKIDR---------TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
              +   N  + G  K  R         T    K   D+I    L+ A    G+V E ++
Sbjct: 62  PPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQ 121

Query: 221 LLRQV-LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           +   +      +P    +  +I+  C+     R  ELL  M      P+  TY  ++ GL
Sbjct: 122 IFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGL 181

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK+ +  + + +  ++  RG+ PD +MY T+++GLCK   L +A ++   MI  G  P  
Sbjct: 182 CKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTV 241

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYNS++  +CR   ++ A RL + M ++G     + YNT+IAGLC   R D+A  L ++
Sbjct: 242 VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M       DVITY+T+I G CK+ ++
Sbjct: 302 MVAARCVPDVITYSTIIDGLCKDWRV 327



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 19/342 (5%)

Query: 103 SPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           +PD+++ N+L D+LV++     AF++      S+   PN  +    I  LC+ G ++ A 
Sbjct: 97  TPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAI 156

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
                + E G   ++ T++  + G  K  RTD  + L  ++   G+         L+   
Sbjct: 157 ELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C   ++ E  EL++ ++  G  P    +N L+  FC  K   R   L+  M  R   PD 
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK-----MGWLGDAR 324
             Y  VI GLC+  +  +A  +   +     VPD + Y+T+I GLCK       W  +A 
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAA 336

Query: 325 KMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
               EM+ + G  PN  TY  +I G CR    ++A  L + M+D        +++ +I  
Sbjct: 337 CEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGS 396

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC     D AY +F  M+++    + + Y  LI G  K G++
Sbjct: 397 LCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 19/346 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           +  GF PD++  N L + L ++R    A++ +     +G  P   +    ++  C S  +
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYL 205
           + AF     + E G    +  +N+ + G  +  R D         +  +   D+I    +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 206 IQAFCNDGKVSEGY------ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           I   C D +V   +      E+L  + + G  P    +  +I   C  +   +   LL  
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRR 377

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     PD  ++  VI  LCKS     AY++F  + ER   P+ V Y  +I GL K G 
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGE 437

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A ++ FE++ +   P   TYNS++ G C +  +EEA R+ + M+ K       +Y  
Sbjct: 438 VDKAVRV-FELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGA 496

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC     +EAY LF+ +  KG   +V  YN L+   CK+ ++
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRL 542



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 175/390 (44%), Gaps = 32/390 (8%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRFFQWLH- 97
           Y+ + + +CK  RT   +  TLL ++    F  D + +   L   N +  S R  + L  
Sbjct: 174 YSVLVEGLCKAGRTDKGF--TLLQEMTRRGFQPDVIMYNTLL---NGLCKSRRLDEALEL 228

Query: 98  ----SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLC 149
                  G  P +V+ N L +    +    RAF++ +  +   G  P+  +    I  LC
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL-IQVMSERGCPPDVINYNTVIAGLC 287

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--DLIES----- 202
               +++A     ++        + T+++ + G  K  R D  WKL    +++E      
Sbjct: 288 RDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347

Query: 203 --------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     +I+  C   K  +   LLR++++  +VP+ ++F+ +I   C+  +     
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           ++   M  R   P+   Y  +I+GL K  +  +A RVF +L    + P    Y +V+ GL
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGL 466

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C +G + +A +M   MIHK   P+  +Y ++I G CR+  +EEA  L + +  KG+    
Sbjct: 467 CGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEV 526

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
             YN L+  LC   R  +A+ +  ++ + G
Sbjct: 527 GVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP++V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+    D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVD 370



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKI 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP +  F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 229 DDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI +  
Sbjct: 289 IYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENT 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G CR     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 349 RLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 85/200 (42%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D     G  P+ 
Sbjct: 259 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK 317

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +                  ++D  D+V+     
Sbjct: 318 ITYTTLIDGCCKDGDLDTAFEHRKRMIQENT---------------RLD--DVVYTA--- 357

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +  + S+LL 
Sbjct: 358 ------LISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 412 EMQRDGHVPSVVTYNVLMNG 431


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 174/388 (44%), Gaps = 50/388 (12%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELY 144
           +I FF+W     GF  D+ + N L + LV     ++ + +  + L + G +PN  S  + 
Sbjct: 102 AISFFRWAGEQAGFQHDVFTYNCLMNLLVAEKNYSQCYAIHEEMLKA-GIAPNTFSFNIL 160

Query: 145 IQ-----------------------------------CLCESGLIEEAFCAFSKLKEMGV 169
           I+                                   CLC++G+ E+AF  F ++  MG 
Sbjct: 161 IRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMGF 220

Query: 170 FGSIKTWNSALL-GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
               +  ++A++   +K  R     +++  + + G+         +I      G   E  
Sbjct: 221 VPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEAL 280

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           ++L  +L    VP    +  L++  C+     R  EL   M A    P++  Y  +I+G 
Sbjct: 281 KVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGF 340

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            KS +  EA  +F+++ E GY PD + +T +I GLCK G    A K + EM+  G  PN 
Sbjct: 341 AKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNV 400

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TY ++I G  +I  +  A R+ K M+  G    +VTY  L+ G C  GR DEA  L +E
Sbjct: 401 VTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDE 460

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + +     ++  Y++L++G C  G + N
Sbjct: 461 LDKCSSSPNLQLYSSLVKGLCDGGSVEN 488



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 160/376 (42%), Gaps = 51/376 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+++  V+ D L ++  F+ A    +     G  PN  +    IQ L + G +  A
Sbjct: 360 GYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANA 419

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------------------ 199
           F     +   G F    T+   L G  K+ R D   +L  +L                  
Sbjct: 420 FRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKG 479

Query: 200 ------------------------IESGY---LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                                   ++ G    +I   C  G++ E   + ++++ +G  P
Sbjct: 480 LCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKP 539

Query: 233 ENTAFNKLISRFCEKKN--FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           + T +N LI+  C  +     R   LLH +      PD  TY  +  GLCK  +   A +
Sbjct: 540 DATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGEVDRAVK 599

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  +   RG+  D V YT +  GLC  G +  A  ++ EM+ +G  P+   Y  +I+G  
Sbjct: 600 MLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLI 659

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRDV 409
           +   LE+A +   EM+ KG   T  TY  L+  LC  G  DEA+H FE M  +G +   V
Sbjct: 660 KGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARGELVGSV 719

Query: 410 ITYNTLIQGYCKEGKI 425
           + Y+ LI G+CK  K+
Sbjct: 720 MIYDALIHGFCKALKV 735



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 155/332 (46%), Gaps = 16/332 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMD--FLDSTGFSPN--PNSLELYIQCLCESGLIEEAF 158
           SP+L   + L   L +  + +  +D  F  S   + N  P      I  LC++G ++EA 
Sbjct: 467 SPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEAC 526

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKI--DRTDLVWKLYHDLIESGYLIQA-------- 208
             F ++   G      T+N  + G  +   +R +  + L HDL   GYL  A        
Sbjct: 527 RIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCI 586

Query: 209 -FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G+V    ++L +    G   +  A+  L +  C +    R   L   MV +  AP
Sbjct: 587 GLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAP 646

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +INGL K +K  +A + F+++  +G  P    YT ++  LC  G + +A   +
Sbjct: 647 DAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRF 706

Query: 328 FEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             M+ +G L+ +   Y+++IHG+C+   ++ A +L ++M+ +G   T VT  +L  GL  
Sbjct: 707 EGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVR 766

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            G+T++A  L +EMA  G      T+  ++ G
Sbjct: 767 SGKTEKAQELLQEMAAGGSPPHAATFTAILDG 798



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 149/361 (41%), Gaps = 17/361 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSP 136
           L +   V  + R  + + +H  F PD V+   L D   +      A   +D LD    SP
Sbjct: 410 LSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSP 468

Query: 137 NPNSLELYIQCLCESGLIEEAFC-AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           N       ++ LC+ G +E      F + K            S ++G  K  R D   ++
Sbjct: 469 NLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDEACRI 528

Query: 196 YHDLIESG---------YLIQAFCN--DGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           +  ++  G          LI   C   + +V   + LL  +   G +P+   +  L    
Sbjct: 529 FQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGL 588

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+     R  ++L    +R    D   Y  +  GLC   +   A  +F ++  +G  PD 
Sbjct: 589 CKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDA 648

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y  +I+GL K   L DA K + EMI KG  P   TY +++   C   N++EA    + 
Sbjct: 649 AAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEG 708

Query: 365 MLDKG-YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ML +G    + + Y+ LI G C   + D A  LFE+M  +G     +T  +L  G  + G
Sbjct: 709 MLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSG 768

Query: 424 K 424
           K
Sbjct: 769 K 769



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 120/280 (42%), Gaps = 15/280 (5%)

Query: 131 STGFSPNPNSLELYIQCLCES--GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           S G  P+  +  + I  LC S    +E AF     L+ +G      T+    +G  KI  
Sbjct: 534 SEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGE 593

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D   K+  +    G+         L    C  G+V     L ++++  G  P+  A+  
Sbjct: 594 VDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCC 653

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +I+   + K      +    M+ + + P   TY  ++  LC +    EA+  F  +  RG
Sbjct: 654 IINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAFHRFEGMLARG 713

Query: 300 YVPDTVM-YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
            +  +VM Y  +IHG CK   +  A K++ +MI +G +P   T  S+  G  R    E+A
Sbjct: 714 ELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKA 773

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           + L +EM   G      T+  ++ GL    ++DE+  L +
Sbjct: 774 QELLQEMAAGGSPPHAATFTAILDGL---RKSDESGKLLK 810



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 118/291 (40%), Gaps = 16/291 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF-----LDSTGFSPNPNSLEL 143
           + R FQ + S  G  PD  + N+L + L  +R  +V   F     L+  G+ P+  +   
Sbjct: 525 ACRIFQRMVSE-GCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTP 583

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
               LC+ G ++ A     +    G    +  + +   G     + D    L+ +++  G
Sbjct: 584 LCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQG 643

Query: 204 ---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     +I       K+ +  +   +++  G  P    +  L+   C   N     
Sbjct: 644 GAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALCHAGNVDEAF 703

Query: 255 ELLHTMVARNRAPDN-FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
                M+AR     +   Y+ +I+G CK+ K   A ++F D+  RG VP  V   ++  G
Sbjct: 704 HRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASLFDG 763

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           L + G    A+++  EM   G  P+  T+ +++ G  + D   +  +L +E
Sbjct: 764 LVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKSDESGKLLKLVQE 814


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 156/326 (47%), Gaps = 10/326 (3%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
           N   + LV A     A+         PN  +    I  LC++G +++A+    ++++ G+
Sbjct: 2   NCALNLLVRAGQHGQAVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRDRGI 61

Query: 170 FGSIKTWNSALLGCIKIDR---------TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
              +   N  + G  K  R         T    K   D+I    L+ A    G+V E ++
Sbjct: 62  PPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQ 121

Query: 221 LLRQV-LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           +   +      +P    +  +I+  C+     R  ELL  M      P+  TY  ++ GL
Sbjct: 122 IFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGL 181

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK+ +  + + +  ++  RG+ PD +MY T+++GLCK   L +A ++   MI  G  P  
Sbjct: 182 CKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTV 241

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYNS++  +CR   ++ A RL + M ++G     + YNT+IAGLC   R D+A  L ++
Sbjct: 242 VTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQ 301

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M       DVITY+T+I G CK+ ++
Sbjct: 302 MVAARCVPDVITYSTIIDGLCKDWRV 327



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 156/342 (45%), Gaps = 19/342 (5%)

Query: 103 SPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           +PD+++ N+L D+LV++     AF++      S+   PN  +    I  LC+ G ++ A 
Sbjct: 97  TPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAI 156

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
                + E G   ++ T++  + G  K  RTD  + L  ++   G+         L+   
Sbjct: 157 ELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C   ++ E  EL++ ++  G  P    +N L+  FC  K   R   L+  M  R   PD 
Sbjct: 217 CKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDV 276

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK-----MGWLGDAR 324
             Y  VI GLC+  +  +A  +   +     VPD + Y+T+I GLCK       W  +A 
Sbjct: 277 INYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAA 336

Query: 325 KMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
               EM+ + G  PN  TY  +I G CR    ++A  L + M+D        +++ +I  
Sbjct: 337 CEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGS 396

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC     D AY +F  M+++    + + Y  LI G  K G++
Sbjct: 397 LCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEV 438



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 156/346 (45%), Gaps = 19/346 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           +  GF PD++  N L + L ++R    A++ +     +G  P   +    ++  C S  +
Sbjct: 198 TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLMELFCRSKQV 257

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYL 205
           + AF     + E G    +  +N+ + G  +  R D         +  +   D+I    +
Sbjct: 258 DRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTI 317

Query: 206 IQAFCNDGKVSEGY------ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           I   C D +V   +      E+L  + + G  P    +  +I   C  +   +   LL  
Sbjct: 318 IDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRR 377

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     PD  ++  VI  LCKS     AY++F  + ER   P+ V Y  +I GL K G 
Sbjct: 378 MIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGE 437

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A ++ FE++ +   P   TYNS++ G C +  +EEA R+ + M+ K       +Y  
Sbjct: 438 VDKAVRV-FELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGA 496

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC     +EAY LF+ +  KG   +V  YN L+   CK+ ++
Sbjct: 497 LIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELCKKKRL 542



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 175/390 (44%), Gaps = 32/390 (8%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRFFQWLH- 97
           Y+ + + +CK  RT   +  TLL ++    F  D + +   L   N +  S R  + L  
Sbjct: 174 YSVLVEGLCKAGRTDKGF--TLLQEMTRRGFQPDVIMYNTLL---NGLCKSRRLDEALEL 228

Query: 98  ----SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLC 149
                  G  P +V+ N L +    +    RAF++ +  +   G  P+  +    I  LC
Sbjct: 229 VQLMIRSGCYPTVVTYNSLMELFCRSKQVDRAFRL-IQVMSERGCPPDVINYNTVIAGLC 287

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--DLIES----- 202
               +++A     ++        + T+++ + G  K  R D  WKL    +++E      
Sbjct: 288 RDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347

Query: 203 --------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     +I+  C   K  +   LLR++++  +VP+ ++F+ +I   C+  +     
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           ++   M  R   P+   Y  +I+GL K  +  +A RVF +L    + P    Y +V+ GL
Sbjct: 408 KIFGMMSERECKPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGL 466

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C +G + +A +M   MIHK   P+  +Y ++I G CR+  +EEA  L + +  KG+    
Sbjct: 467 CGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEV 526

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
             YN L+  LC   R  +A+ +  ++ + G
Sbjct: 527 GVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+   +LVW  Y +++E GY
Sbjct: 73  ITAYLESGFLRDAVECYRLTREHKFWVPFDTCKKMLEHLVKLKYFNLVWAFYEEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G +     +   + + GL P   ++N L++ +    +     +
Sbjct: 133 PASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFK 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F ++  +G VP+ V +TT+I G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+   L +A  L  EM  KG     +
Sbjct: 253 KNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 152/321 (47%), Gaps = 29/321 (9%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + LV+ + F +   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 103 TCKKMLEHLVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
            + G+  S+ ++N+ + G I++                          G ++EG++L   
Sbjct: 163 TKWGLRPSVVSYNTLMNGYIRL--------------------------GDLNEGFKLKSA 196

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +   G+ P+   ++ LI+  C++      +EL   M+ +   P+  T+  +I+G CK+ +
Sbjct: 197 MHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGR 256

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A  V+  +  +  +PD + Y T+I+GLCK G L  A  +  EM  KGL P++ TY +
Sbjct: 257 VDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKGLKPDKITYTT 316

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G C+  +L+ A    K M+ +      V Y  LI+GLC  GR+ +A  +  EM   G
Sbjct: 317 LIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLSFG 376

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  D  TY  +I  +CK+G +
Sbjct: 377 LKPDTGTYTMIINEFCKKGDV 397



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/222 (30%), Positives = 113/222 (50%), Gaps = 2/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           LI A+   G + +  E  R   E    VP +T   K++    + K F  V      ++  
Sbjct: 72  LITAYLESGFLRDAVECYRLTREHKFWVPFDTC-KKMLEHLVKLKYFNLVWAFYEEILEC 130

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
                 + +  +++  CK      A  VF+ + + G  P  V Y T+++G  ++G L + 
Sbjct: 131 GYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEG 190

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K+   M   G+ P+ YTY+ +I+G C+   +++A  L +EML KG     VT+ TLI G
Sbjct: 191 FKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDG 250

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C +GR D A  ++++M  + +  D+ITYNTLI G CK+G +
Sbjct: 251 HCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIYGLCKKGAL 292


>gi|255548994|ref|XP_002515553.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545497|gb|EEF47002.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 927

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 90/320 (28%), Positives = 161/320 (50%), Gaps = 11/320 (3%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           D LV A  F    D ++  G SPN  +  + I+  C++G + +A+  ++++K   +  ++
Sbjct: 363 DKLVSALEF---FDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTV 419

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIES--------GYLIQAFCNDGKVSEGYELLRQV 225
              NS + G +K++  +   KL+ + +            L+   C +GK+SE   L +++
Sbjct: 420 FIVNSLIRGFLKVESREEASKLFDEAVACDIANIFTYNSLLSWLCKEGKMSEATTLWQKM 479

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L+ GL P   ++N +I   C + N    + +   M+     P+  TY  +++G  K+   
Sbjct: 480 LDKGLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDT 539

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A+ VF+ + +   VP    Y   I+GLCK+G   +A+ M  + + KG +P   TYNS+
Sbjct: 540 EYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSI 599

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           + G+ +  ++  A   ++EM + G     +TY TLI G C +  TD A  +  EM  KG+
Sbjct: 600 MDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGL 659

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             D+  Y  LI G+CK+  I
Sbjct: 660 ELDIAAYGALIDGFCKKQDI 679



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 147/304 (48%), Gaps = 9/304 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P   S    I   C  G ++ A   FS + + G+  ++ T++  + G  K   T+  
Sbjct: 483 GLAPTKVSYNSMILGHCRQGNLDMAASVFSDMLDCGLKPNVITYSILMDGYFKNGDTEYA 542

Query: 193 WKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + ++  +++   +         I   C  G+ SE  ++L++ +E G VP    +N ++  
Sbjct: 543 FYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDG 602

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           F ++ +          M     +P+  TY  +ING CK+     A ++ N+++ +G   D
Sbjct: 603 FIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELD 662

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y  +I G CK   +  A  ++ E++  GL PN   YNS+I GY  ++N+E A  L K
Sbjct: 663 IAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQK 722

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            ML +G      TY TLI GL   GR   A  L+ EM+ KGI  D+I Y  LI G C +G
Sbjct: 723 RMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKG 782

Query: 424 KIVN 427
           ++ N
Sbjct: 783 QLEN 786



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 141/292 (48%), Gaps = 12/292 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P   + N+  + L +      A D L      GF P   +    +    + G +  A  A
Sbjct: 556 PSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSIMDGFIKEGSVSSALTA 615

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           + ++ E GV  ++ T+ + + G  K + TDL  K+ +         D+   G LI  FC 
Sbjct: 616 YREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGLELDIAAYGALIDGFCK 675

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +     L  ++L+ GL P +  +N LIS +    N      L   M+    + D  T
Sbjct: 676 KQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALNLQKRMLGEGISCDLQT 735

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GL K  + + A  +++++  +G +PD ++YT +I+GLC  G L +A+K+  EM 
Sbjct: 736 YTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLCGKGQLENAQKILAEME 795

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              + PN   YN++I G+ +  NL+EA RLH EMLDKG      TY+ LI G
Sbjct: 796 RDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDTTYDILING 847



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 155/373 (41%), Gaps = 53/373 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEAR------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +P  VS N +   L   R      A  V  D LD  G  PN  +  + +    ++G  
Sbjct: 483 GLAPTKVSYNSMI--LGHCRQGNLDMAASVFSDMLD-CGLKPNVITYSILMDGYFKNGDT 539

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E AF  F ++ +  +  S  T+N  + G  K+ RT     +    +E G+         +
Sbjct: 540 EYAFYVFDRMVDENIVPSDFTYNIKINGLCKVGRTSEAQDMLKKFVEKGFVPVCLTYNSI 599

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +  F  +G VS      R++ E G+ P    +  LI+ FC+  N     ++ + M  +  
Sbjct: 600 MDGFIKEGSVSSALTAYREMCESGVSPNVITYTTLINGFCKNNNTDLALKMRNEMRNKGL 659

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY------------------ 307
             D   Y  +I+G CK +    A  +F++L + G  P++V+Y                  
Sbjct: 660 ELDIAAYGALIDGFCKKQDIETASWLFSELLDGGLSPNSVIYNSLISGYRNLNNMEAALN 719

Query: 308 -----------------TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
                            TT+I GL K G L  A  ++ EM  KG++P+   Y  +I+G C
Sbjct: 720 LQKRMLGEGISCDLQTYTTLIDGLLKEGRLVLALDLYSEMSAKGIIPDIIIYTVLINGLC 779

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
               LE A+++  EM           YN LIAG    G   EA+ L  EM  KG+  +  
Sbjct: 780 GKGQLENAQKILAEMERDSITPNVPIYNALIAGHFKAGNLQEAFRLHNEMLDKGLTPNDT 839

Query: 411 TYNTLIQGYCKEG 423
           TY+ LI G  K G
Sbjct: 840 TYDILINGKIKGG 852



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 180/445 (40%), Gaps = 77/445 (17%)

Query: 49  KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVS 108
           ++  TKP  + ++L+     N  D L     L  + +   ++ +F+ L    GF   L S
Sbjct: 69  QVELTKPASQDSVLART---NVIDTL-----LSYKRDPYSALTYFKQLECTRGFVRSLDS 120

Query: 109 CNVLFDSLV-EARAFKVAMDFLD---STGFSPNPNSL-----------------ELY--- 144
             VL   L   +   K A + L+   S    P PN L                  +Y   
Sbjct: 121 LCVLLHILTRSSETLKQAQNLLNRFISGDSGPMPNILVDHFIGSTKRFDFDSDIRIYNYL 180

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           +    ++  + +A   F++L E  +   IK  N  L   +K D      ++Y  ++  G 
Sbjct: 181 LNSYIKANKLNDAIGCFNRLVESDIVPWIKFLNFLLTALVKNDMIYEAREVYEKMVLKGV 240

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    +++A   D    E  +   +    G+  +  A++ +I  FC+  +      
Sbjct: 241 HGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRGVKLDAAAYSIVIQAFCKNLDVELACG 300

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  M  +   P   T+  VI    K    +EA R+ +++   G   + V+ TT++ G C
Sbjct: 301 LLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEALRLKDEMVSCGVQMNVVVATTLVKGYC 360

Query: 316 KM-----------------------------------GWLGDARKMWFEMIHKGLLPNEY 340
           K                                    G +  A  ++ +M +K + P  +
Sbjct: 361 KQDKLVSALEFFDKMNENGPSPNRVTYAVLIEWCCKNGNMAKAYDLYTQMKNKNICPTVF 420

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
             NS+I G+ ++++ EEA +L  E +         TYN+L++ LC  G+  EA  L+++M
Sbjct: 421 IVNSLIRGFLKVESREEASKLFDEAVACDIA-NIFTYNSLLSWLCKEGKMSEATTLWQKM 479

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
             KG+    ++YN++I G+C++G +
Sbjct: 480 LDKGLAPTKVSYNSMILGHCRQGNL 504



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 76/153 (49%)

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           ++  L K+    EA  V+  +  +G   D      ++    K     +A+K + E   +G
Sbjct: 215 LLTALVKNDMIYEAREVYEKMVLKGVHGDCFTVHIMMRANLKDNNEEEAKKFFLEAKSRG 274

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +  +   Y+ +I  +C+  ++E A  L K+M DKG+  +  T+ ++I      G   EA 
Sbjct: 275 VKLDAAAYSIVIQAFCKNLDVELACGLLKDMRDKGWVPSEGTFTSVIGACVKQGNMVEAL 334

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L +EM   G+  +V+   TL++GYCK+ K+V+
Sbjct: 335 RLKDEMVSCGVQMNVVVATTLVKGYCKQDKLVS 367


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 102/403 (25%), Positives = 188/403 (46%), Gaps = 22/403 (5%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLF-----FREFLKQQNNVLLSIRFFQ 94
           +T   K  C+ +R  P   + LL+++PS                F ++ + V     F +
Sbjct: 149 FTIRMKSFCRTSR--PHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEE 206

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCES 151
            L    G  PD+++ N L  +L      + +   L+     G SPN  ++ ++IQ  C+ 
Sbjct: 207 MLG--LGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQR 264

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
            ++ EA      +   G+   + T+N+ + G  K  +          ++  GY       
Sbjct: 265 AMLNEAIRLLDGVGR-GLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTY 323

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I  +C  G +    ++LR     G VP+ + +  LI+  C+  +  R   + +  + 
Sbjct: 324 NSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAME 383

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   P+      ++ GL +    L+A ++ N++ E G  PD   Y  VI+GLCK+G + D
Sbjct: 384 KGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSD 443

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  + I KG LP+ +T+N++I GYC+   L+ A  +   M + G     +TYN+++ 
Sbjct: 444 ADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILN 503

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC  G+ ++    F+ M +KG   ++ITYN L + +CK  K+
Sbjct: 504 GLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKV 546



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 156/336 (46%), Gaps = 11/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEAF 158
           G SP+L + N+      +      A+  LD  G   +P+  +    I  LC++  + EA 
Sbjct: 246 GVSPNLFTVNIFIQGFCQRAMLNEAIRLLDGVGRGLTPDVITYNTLICGLCKNFKVVEAE 305

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
               K+   G      T+NS + G  K+       ++  D    G+         LI   
Sbjct: 306 HYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGL 365

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C DG +     +  + +E GL P     N L+    ++    +  +L++ M     +PD 
Sbjct: 366 CQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDI 425

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +TY  VINGLCK     +A  +  D   +G++PD   + T+I G CK   L +A ++   
Sbjct: 426 WTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDR 485

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M + G+ P+  TYNS+++G C+    E+     K M++KG     +TYN L    C   +
Sbjct: 486 MWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARK 545

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA +L EEM  KG+  DV+ + TL++G+C  G +
Sbjct: 546 VEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDL 581



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 160/372 (43%), Gaps = 50/372 (13%)

Query: 104 PDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P + S N + + LVE R F    KV M   D  G  P+  +  + ++  C +     A  
Sbjct: 109 PSVQSYNAIMNILVEYRYFDQAHKVYMRMRDK-GIVPDVYTFTIRMKSFCRTSRPHAARR 167

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
             + +   G   S   + + + G  + +      +L+ +++  G          LI   C
Sbjct: 168 LLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLC 227

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G V E   LL +VL+ G+ P     N  I  FC++        LL   V R   PD  
Sbjct: 228 RKGHVQESERLLNKVLKRGVSPNLFTVNIFIQGFCQRAMLNEAIRLLDG-VGRGLTPDVI 286

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I GLCK+ K +EA      +   GY PD   Y ++I G CK+G + +A ++  + 
Sbjct: 287 TYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQNADQILRDG 346

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG +P+E TY S+I+G C+  +++ A  +  E ++KG     V  NTL+ GL   G  
Sbjct: 347 AFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLI 406

Query: 391 DEAYHLFEEMAQ-----------------------------------KGIFRDVITYNTL 415
            +A  L  EM++                                   KG   DV T+NTL
Sbjct: 407 LQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTL 466

Query: 416 IQGYCKEGKIVN 427
           I GYCK+ K+ N
Sbjct: 467 IDGYCKKLKLDN 478



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 156/334 (46%), Gaps = 17/334 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA-----MDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           G +PD+++ N L   L   + FKV      +  + + G+ P+  +    I   C+ G+++
Sbjct: 280 GLTPDVITYNTLICGL--CKNFKVVEAEHYLRKMVNEGYEPDGFTYNSIIDGYCKLGMMQ 337

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
            A          G      T+ S + G  +    D    ++++ +E G          L+
Sbjct: 338 NADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLV 397

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +     G + +  +L+ ++ E+G  P+   +N +I+  C+         L+   +A+   
Sbjct: 398 KGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHL 457

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD FT+  +I+G CK  K   A  + + +   G  PD + Y ++++GLCK G   D    
Sbjct: 458 PDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGT 517

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M+ KG +PN  TYN +   +C+   +EEA  L +EM +KG     V + TL+ G C 
Sbjct: 518 FKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCD 577

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVI-TYNTLIQGY 419
           +G  D AY LF+ + ++  F   I TYN +I  +
Sbjct: 578 NGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAF 611



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/373 (23%), Positives = 157/373 (42%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD  + N + D   +    + A   L      GF P+ ++    I  LC+ G I+ A
Sbjct: 315 GYEPDGFTYNSIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRA 374

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F++  E G+  ++   N+ + G  +        KL +++ E+G          +I  
Sbjct: 375 INVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVING 434

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G VS+   L+   +  G +P+   FN LI  +C+K       E++  M     +PD
Sbjct: 435 LCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPD 494

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCK+ K  +    F  + E+G VP+ + Y  +    CK   + +A  +  
Sbjct: 495 VITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIE 554

Query: 329 EMIHKGLLPNEYTYNSMIHGYC-------------RID---------------------- 353
           EM +KGL P+   + +++ G+C             R+D                      
Sbjct: 555 EMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATYNIMINAFAGK 614

Query: 354 -NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N+  A++L  +M + G+   + TY  +I G C  G  +  Y       +KG+   + T+
Sbjct: 615 LNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGYSFLLVKIEKGLIPSLTTF 674

Query: 413 NTLIQGYCKEGKI 425
             ++   C + ++
Sbjct: 675 GRVLNCLCLKRRV 687



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/370 (23%), Positives = 148/370 (40%), Gaps = 50/370 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  +   L + L +      A++  +     G  PN       ++ L + GLI +A
Sbjct: 350 GFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKGLKPNLVLCNTLVKGLSQQGLILQA 409

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
               +++ E G    I T+N  + G  KI        L  D I  G+L         I  
Sbjct: 410 LKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDG 469

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   K+    E++ ++   G+ P+   +N +++  C+   +  V      M+ +   P+
Sbjct: 470 YCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPN 529

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA----- 323
             TY  +    CK+RK  EA  +  +++ +G  PD V + T++ G C  G L  A     
Sbjct: 530 IITYNILTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFK 589

Query: 324 -------------------------------RKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
                                           K++ +M   G  P+ YTY  MI G+C+ 
Sbjct: 590 RVDEQYKFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKT 649

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N+          ++KG   +  T+  ++  LCL  R  EA  +   M  KGI  +V+  
Sbjct: 650 GNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVV-- 707

Query: 413 NTLIQGYCKE 422
           NT+ +   KE
Sbjct: 708 NTIFEADKKE 717



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 138/296 (46%), Gaps = 12/296 (4%)

Query: 134 FSPNP-NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           +  NP  +LE++     E G           ++++G  G  +     L         +  
Sbjct: 16  YQKNPLKALEIFNSVKKEDGFKHTLLTYKGMIEKLGFHGEFEAMEEVL--------AETR 67

Query: 193 WKLYHDLIESGYL--IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
             + + L+E  Y+  ++ +   GK+ E  ++  ++      P   ++N +++   E + F
Sbjct: 68  MNIDNGLLEGVYIGAMRNYGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYF 127

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            +  ++   M  +   PD +T+   +   C++ +   A R+ N++  +G     V Y TV
Sbjct: 128 DQAHKVYMRMRDKGIVPDVYTFTIRMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTV 187

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I G  +     +A +++ EM+  G+ P+   +N +IH  CR  +++E++RL  ++L +G 
Sbjct: 188 IGGFYEENHRVEAHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGV 247

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                T N  I G C     +EA  L + +  +G+  DVITYNTLI G CK  K+V
Sbjct: 248 SPNLFTVNIFIQGFCQRAMLNEAIRLLDGVG-RGLTPDVITYNTLICGLCKNFKVV 302


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN     + I   C+  L  +A   + K+ +MG+   I T+ S + G  +  +   V +L
Sbjct: 222 PNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQL 281

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             +++             LI AFC  GK+ E   +   +++ G  P+   FN LIS  C 
Sbjct: 282 MCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCL 341

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             N     +L  T+  R   PD ++Y  +I G CK ++  EA  +FN+++ +  V D V+
Sbjct: 342 HGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVL 401

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+++I GLCK G +  A +++  + + G  PN  TYN +I  +C+I +++    L K M 
Sbjct: 402 YSSLIDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMC 461

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            KG   T +TYN LI G C   R  EA +L   M  K +  D ITYN+L  G CK G+I
Sbjct: 462 GKGLTPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRI 520



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++  N +  S+V+ +   VA+  L      G +P+  +L ++I C C  G +  AF  
Sbjct: 82  PSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWINCYCHLGEMGFAFSV 141

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CI------KIDRTDLVWK--LYHDLIESGYLIQAFCN 211
              + + G   +  T  + + G CI       +D  D V    +  D +  G LI   C 
Sbjct: 142 LGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGMLLDEVCYGTLINGLCK 201

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+  + ++LL+++    + P    +N +I  FC+ +   +  +L   +V     PD  T
Sbjct: 202 IGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKARDLYLKIVDMGIDPDILT 261

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I G C++ +  E  ++  ++  +   P+   +  +I   C+ G + +A+ M+  M+
Sbjct: 262 YTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKGKMIEAQGMFNLMV 321

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G  P+  T+N++I G+C   N+ EA++L   + ++G      +Y  LI G C   R D
Sbjct: 322 KRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYTILIIGYCKCKRID 381

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  LF EM  K +  D++ Y++LI G CK G+I
Sbjct: 382 EAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRI 415



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 135/282 (47%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------- 205
           I++A   F+ L  M    S+  +N+ +   +K+    +   L   ++  G          
Sbjct: 65  IDDAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSI 124

Query: 206 -IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I  +C+ G++   + +L  VL+ G  P N     ++   C      +  +    + A+ 
Sbjct: 125 WINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQG 184

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D   Y  +INGLCK  + ++A+++  +++ +   P+ V+Y  +I   CK      AR
Sbjct: 185 MLLDEVCYGTLINGLCKIGRSIDAFQLLQEMEGQVVKPNIVIYNMIIDSFCKDELTCKAR 244

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ +++  G+ P+  TY S+I G+CR     E K+L  EM++K       T+N LI   
Sbjct: 245 DLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAF 304

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G+  EA  +F  M ++G   D++T+NTLI G+C  G ++
Sbjct: 305 CRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVL 346



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 128/270 (47%), Gaps = 20/270 (7%)

Query: 102 FSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
            +P++ + NVL D+      ++EA+      + +   G  P+  +    I   C  G + 
Sbjct: 290 INPNVYTFNVLIDAFCRKGKMIEAQGM---FNLMVKRGQQPDIVTFNTLISGHCLHGNVL 346

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
           EA   F  + E G+   + ++   ++G  K  R D    L++         D++    LI
Sbjct: 347 EARKLFDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLI 406

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G++S  +EL   +  DG  P    +N LI  FC+ ++     EL   M  +   
Sbjct: 407 DGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLT 466

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY  +ING CKS++  EA  + + ++ +   PD++ Y ++  GLCK G + DA ++
Sbjct: 467 PTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWEL 526

Query: 327 WFEMIHKGLLPNEY-TYNSMIHGYCRIDNL 355
            F+++H G  P +  TYN ++  +C+  ++
Sbjct: 527 -FKVMHVGGPPVDVATYNVLLDAFCKAQDV 555



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 74/141 (52%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  +FN L     +P  + + T+I  + KM     A  +  +M+ KG+ P+ +T +  I
Sbjct: 67  DAVTLFNHLINMQPLPSVIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLSIWI 126

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + YC +  +  A  +   +L +GY    +T  T++ GLC++G   +A    + +A +G+ 
Sbjct: 127 NCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQGML 186

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
            D + Y TLI G CK G+ ++
Sbjct: 187 LDEVCYGTLINGLCKIGRSID 207


>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
 gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
          Length = 841

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 158/304 (51%), Gaps = 9/304 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  S    I   C+ G ++ A   F ++ E G+  ++ T++  + G  K   T+  
Sbjct: 463 GVRPSVVSYNNMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYA 522

Query: 193 WKLY-----HDLIESGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + LY      ++  S +    +I   C  G+ SE  + L++++++G +P    +N +I  
Sbjct: 523 FGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDG 582

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           F ++ +      +   M     +P+ FTY  +ING CKS     A +V +++K +G   D
Sbjct: 583 FVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELD 642

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
             +Y  +I G C+ G + +A ++  E+   GL PN+  Y+SMI G+ ++ N+E A  LHK
Sbjct: 643 VTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHK 702

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            M+++G       Y TLI+GL   G+   A  L+ EM  KGI  D+ITY+ LI G C +G
Sbjct: 703 RMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAEMLAKGIMPDLITYSVLIHGLCNKG 762

Query: 424 KIVN 427
           ++ N
Sbjct: 763 QLEN 766



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L++ +VL D   +    + A    D       +P+  +  + I  LC++G   E+
Sbjct: 498 GLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGENIAPSDFTCNIIINGLCKAGRTSES 557

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                KL + G   +  T+N  + G +K    +    +Y ++ + G          LI  
Sbjct: 558 QDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALAVYTEMCKIGVSPNVFTYTNLING 617

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +    +++ ++   G+  + T +  LI  FC K +    S+LL  +     +P+
Sbjct: 618 FCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSELQEVGLSPN 677

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+G  K +    A  +   +   G   D  +YTT+I GL K G L  A +++ 
Sbjct: 678 KVVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYA 737

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG++P+  TY+ +IHG C    LE A+++ ++M  K    T   YNTLI G    G
Sbjct: 738 EMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITGHFKEG 797

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA+ L  EM  KG+  D  TY+ L+ G  K+G +
Sbjct: 798 NLQEAFRLHNEMLDKGLVPDDTTYDILVNGKVKDGNL 834



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 150/309 (48%), Gaps = 8/309 (2%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D ++  G  PN  +  + I+  C++G +++A+  ++++K   +  ++   NS + G +K 
Sbjct: 353 DKMNENGICPNNVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKA 412

Query: 187 DRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
              +   KL+ + +  G         L+   C +GK+SE   +  +++  G+ P   ++N
Sbjct: 413 RSPEEASKLFDEAVACGIANVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYN 472

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            +I   C++ +    + +   M+ +   P+  TY  +++G  K      A+ +++ ++  
Sbjct: 473 NMILGHCQQGDMDSANGVFVEMLEKGLKPNLITYSVLMDGYFKKGDTEYAFGLYDRMRGE 532

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
              P       +I+GLCK G   +++    +++ +G +P   TYN +I G+ +  ++  A
Sbjct: 533 NIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSA 592

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             ++ EM   G      TY  LI G C     D A  + +EM  KGI  DV  Y  LI G
Sbjct: 593 LAVYTEMCKIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYCALIDG 652

Query: 419 YCKEGKIVN 427
           +C++G +VN
Sbjct: 653 FCRKGDMVN 661



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 152/362 (41%), Gaps = 65/362 (17%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
           F  D    N L +S V+ +    A+D  +S       P    + +++  L ++ +I EA 
Sbjct: 150 FESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLSELVKNNMIREAR 209

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             ++K+   GV G   T +                           +I+A   +GK+ E 
Sbjct: 210 DVYNKMASKGVKGDCATIS--------------------------VMIRASMREGKLEEA 243

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
               R+    G+  +  A++ +I   C+K +      LL  M  +   P    +  VI  
Sbjct: 244 EGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGV 303

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             K  K LEA +V  ++   G   + V+ TT++ G CK G L  A +++ +M   G+ PN
Sbjct: 304 CMKQGKMLEAVKVKGEMLSCGKPMNVVVATTLMKGYCKQGDLDSALELFDKMNENGICPN 363

Query: 339 EYTY-----------------------------------NSMIHGYCRIDNLEEAKRLHK 363
             TY                                   NS+I GY +  + EEA +L  
Sbjct: 364 NVTYAVIIEWCCKNGNMDKAYEIYNQMKNKDISPTVFNVNSLIRGYLKARSPEEASKLFD 423

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E +  G      TYN+L++ LC  G+  EA  ++E+M +KG+   V++YN +I G+C++G
Sbjct: 424 EAVACGIA-NVFTYNSLLSWLCKEGKMSEACSIWEKMVRKGVRPSVVSYNNMILGHCQQG 482

Query: 424 KI 425
            +
Sbjct: 483 DM 484



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 79/174 (45%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           V+ L+ +    +   D+  +  ++N   K+++  +A   FN L E+  VP   +    + 
Sbjct: 138 VARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCFNSLIEKDIVPCLTVMNIFLS 197

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            L K   + +AR ++ +M  KG+  +  T + MI    R   LEEA+   +E  +KG   
Sbjct: 198 ELVKNNMIREARDVYNKMASKGVKGDCATISVMIRASMREGKLEEAEGWFREAKNKGVEL 257

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               Y+ +I  +C    +  A  L  EM  KG     + +  +I    K+GK++
Sbjct: 258 DARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPHEVIFTRVIGVCMKQGKML 311


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD  +   L   L        A+  +D     G  P+  +    +  LC+ G I+ A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+++  +   +  +N+ + G  K    D    L+ ++   G          LI  
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISC 302

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  ++E  + P    F+ LI  F ++       +L   M+ R+  PD
Sbjct: 303 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 362

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C   +  EA  +F  +  +   P+ V Y+T+I G CK   + +  +++ 
Sbjct: 363 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFR 422

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TY ++IHG+ +  + + A+ + K+M+  G     +TYN L+ GLC +G
Sbjct: 423 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 482

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  +A  +FE + +  +  D+ TYN +I+G CK GK+
Sbjct: 483 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKV 519



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 159/331 (48%), Gaps = 12/331 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S DL + ++  +         +A+  L      G+ P+  +L   +   C S  I +A
Sbjct: 113 GISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDA 172

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ EMG      T+ + + G    ++      L           DL+  G ++  
Sbjct: 173 VALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNG 232

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +     LL+++ +  +  +   +N +I   C+ K+      L   M  +   PD
Sbjct: 233 LCKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPD 292

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I+ LC   +  +A R+ +D+ ER   P+ V ++ +I    K G L +A K++ 
Sbjct: 293 VFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYD 352

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI + + P+ +TY+S+I+G+C  D L+EAK + + M+ K      VTY+TLI G C   
Sbjct: 353 EMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAK 412

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R +E   LF EM+Q+G+  + +TY TLI G+
Sbjct: 413 RVEEGMELFREMSQRGLVGNTVTYTTLIHGF 443



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 143/282 (50%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           +++A   F  + +   F SI  +N  L    K+++ +LV  L          HDL     
Sbjct: 64  VDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSI 123

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I  FC   ++S    +L ++++ G  P+    + L++ +C  K       L+  MV   
Sbjct: 124 FINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 183

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD FT+  +I+GL    K  EA  + + + +RG  PD V Y TV++GLCK G +  A 
Sbjct: 184 YKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLAL 243

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  +   YN++I G C+  ++++A  L  EM +KG      TY++LI+ L
Sbjct: 244 SLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCL 303

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L  +M ++ I  +V+T++ LI  + KEGK+V
Sbjct: 304 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLV 345



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 155/338 (45%), Gaps = 15/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+ + + L   L      + A ++  D ++    +PN  +    I    + G + E
Sbjct: 288 GIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERK-INPNVVTFSALIDAFVKEGKLVE 346

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A   + ++ +  +   I T++S + G    DR D    ++  +I             LI+
Sbjct: 347 AEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIK 406

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   +V EG EL R++ + GLV     +  LI  F + ++      +   MV+    P
Sbjct: 407 GFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHP 466

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++GLCK+ K  +A  VF  L+     PD   Y  +I G+CK G + D  +++
Sbjct: 467 NILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELF 526

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KG+ PN   YN+MI G+CR  + EEA  L K+M + G    + TYNTLI      
Sbjct: 527 CNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIRARLRD 586

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  + +  L +EM   G   D  T   L+     +G++
Sbjct: 587 GDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRL 623



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/208 (30%), Positives = 102/208 (49%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           KV +  +L   +++    P    FNKL+S   +   F  V  L   M     + D +TY 
Sbjct: 63  KVDDAVDLFGDMVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYS 122

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
             IN  C+  +   A  V   + + GY PD V  +++++G C    + DA  +  +M+  
Sbjct: 123 IFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEM 182

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  P+ +T+ ++IHG    +   EA  L  +M+ +G     VTY T++ GLC  G  D A
Sbjct: 183 GYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGTVVNGLCKRGDIDLA 242

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             L ++M +  I  DV+ YNT+I G CK
Sbjct: 243 LSLLKKMEKGKIEADVVIYNTIIDGLCK 270


>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 784

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD VS N + D L +      A D L    + G  PN N+  + +   C+ G ++EA   
Sbjct: 245 PDNVSYNTILDVLCKKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQV 304

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQAFCN 211
              + +  V   + T+N  + G  K  + D  +         KL  D++    LI    +
Sbjct: 305 IDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFD 364

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
                +G+EL+ ++   G+ P    +N ++  + ++         L  M     +PD  T
Sbjct: 365 CSSSLKGFELIDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVT 424

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +ING CK+ +  EA+R+ +++  +G   ++V   T++H LC    L DA K+     
Sbjct: 425 FNTLINGYCKAGRLSEAFRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSAS 484

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G   +E +Y ++I GY +     EA +L  EM +K    + +TYNT+I GLC  G+TD
Sbjct: 485 KRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTD 544

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++     E+ + G+  D  TYNT+I GYC+EG++
Sbjct: 545 QSIDKLNELLESGLVPDETTYNTIILGYCREGQV 578



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 156/325 (48%), Gaps = 31/325 (9%)

Query: 104 PDLVSCNVL----FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           PD+V+ N L    FD     + F++ +D ++  G  PN  +  + ++   + G ++ A  
Sbjct: 350 PDVVTYNTLINGCFDCSSSLKGFEL-IDKMEGKGVKPNAVTYNVVVKWYVKEGKMDNAGN 408

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
              K++E G      T+N+                          LI  +C  G++SE +
Sbjct: 409 ELRKMEESGFSPDCVTFNT--------------------------LINGYCKAGRLSEAF 442

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            ++ ++   GL   +   N ++   C ++      +LL +   R    D  +Y  +I G 
Sbjct: 443 RMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGY 502

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            K  K +EA ++++++KE+  +P  + Y T+I GLC  G    +     E++  GL+P+E
Sbjct: 503 FKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDE 562

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN++I GYCR   +E+A + H +M+ K +     T N L+ GLC  G  D+A  LF  
Sbjct: 563 TTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFNT 622

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGK 424
              KG   D +TYNT+I G CKE +
Sbjct: 623 WISKGKAIDAVTYNTIISGLCKEDR 647



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/366 (27%), Positives = 161/366 (43%), Gaps = 67/366 (18%)

Query: 102 FSPDLVSCNVLFDSLV----EARAFKVAMDFLD--STGFSPNPNSLELYIQCLCESGLIE 155
             P+L++CN L ++LV    +   +     F D    G   N N+  + I   C    + 
Sbjct: 170 LKPNLLTCNTLINALVRYPSKPSVYLSKAIFSDVIKLGVKVNTNTFNILIYGCCIENKLS 229

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EA     K+K+   F    ++N+                          ++   C  GK+
Sbjct: 230 EAIGLIGKMKDFSCFPDNVSYNT--------------------------ILDVLCKKGKL 263

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           +E  +LL  +  +GL+P    FN L+S +C+       ++++  M   N  PD +TY  +
Sbjct: 264 NEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNML 323

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL--------------------- 314
           I GLCK  K  EA+R+ ++++    +PD V Y T+I+G                      
Sbjct: 324 IGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGV 383

Query: 315 --------------CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
                          K G + +A     +M   G  P+  T+N++I+GYC+   L EA R
Sbjct: 384 KPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFR 443

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  EM  KG    +VT NT++  LC   + D+AY L    +++G F D ++Y TLI GY 
Sbjct: 444 MMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYF 503

Query: 421 KEGKIV 426
           K+GK V
Sbjct: 504 KDGKSV 509



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 162/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  + N+L     +    K A   +D +      P+  +  + I  LC+ G I+EA
Sbjct: 277 GLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGLCKDGKIDEA 336

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKL-----YHDLIESGYLIQA 208
           F    +++ + +   + T+N+ + GC     +    +L+ K+       + +    +++ 
Sbjct: 337 FRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPNAVTYNVVVKW 396

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +GK+      LR++ E G  P+   FN LI+ +C+         ++  M  +    +
Sbjct: 397 YVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKMN 456

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + T   +++ LC  RK  +AY++ +   +RGY  D V Y T+I G  K G   +A K+W 
Sbjct: 457 SVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWD 516

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K ++P+  TYN+MI G C     +++     E+L+ G      TYNT+I G C  G
Sbjct: 517 EMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREG 576

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + ++A+    +M +K    D+ T N L++G C EG
Sbjct: 577 QVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEG 611



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/363 (26%), Positives = 167/363 (46%), Gaps = 37/363 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GFSPD V+ N L +   +A     AF++ MD +   G   N  +L   +  LC    +++
Sbjct: 417 GFSPDCVTFNTLINGYCKAGRLSEAFRM-MDEMSRKGLKMNSVTLNTILHTLCGERKLDD 475

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A+   S   + G F    ++ + ++G  K  ++    KL+ ++ E            +I 
Sbjct: 476 AYKLLSSASKRGYFVDEVSYGTLIMGYFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIG 535

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ GK  +  + L ++LE GLVP+ T +N +I  +C +    +  +  + MV ++  P
Sbjct: 536 GLCHSGKTDQSIDKLNELLESGLVPDETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKP 595

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FT   ++ GLC      +A ++FN    +G   D V Y T+I GLCK     +A  + 
Sbjct: 596 DLFTCNILLRGLCTEGMLDKALKLFNTWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLL 655

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG------------------ 369
            EM  K L P+ YTYN+++        ++EA+     ++++G                  
Sbjct: 656 AEMEEKKLGPDCYTYNAILSALADAGRMKEAEEFMSRIVEQGKLQDQTISLNKRKIESSS 715

Query: 370 -----YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                    +VT++  I  LC  G+  +A H+ +E  QKGI     TY +L++G  K  K
Sbjct: 716 ETSQESDPNSVTFSEQINELCTQGKYKDAMHMVQESTQKGITLHKSTYISLMEGLIKRRK 775

Query: 425 IVN 427
            ++
Sbjct: 776 SIS 778



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 86/320 (26%), Positives = 146/320 (45%), Gaps = 12/320 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ NV+    V+      A + L   + +GFSP+  +    I   C++G + EA
Sbjct: 382 GVKPNAVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEA 441

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGYLIQA 208
           F    ++   G+  +  T N+ L       + D  +KL         + D +  G LI  
Sbjct: 442 FRMMDEMSRKGLKMNSVTLNTILHTLCGERKLDDAYKLLSSASKRGYFVDEVSYGTLIMG 501

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  DGK  E  +L  ++ E  ++P    +N +I   C      +  + L+ ++     PD
Sbjct: 502 YFKDGKSVEAMKLWDEMKEKEIIPSIITYNTMIGGLCHSGKTDQSIDKLNELLESGLVPD 561

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C+  +  +A++  N + ++ + PD      ++ GLC  G L  A K++ 
Sbjct: 562 ETTYNTIILGYCREGQVEKAFQFHNKMVKKSFKPDLFTCNILLRGLCTEGMLDKALKLFN 621

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             I KG   +  TYN++I G C+ D  EEA  L  EM +K  G    TYN +++ L   G
Sbjct: 622 TWISKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAG 681

Query: 389 RTDEAYHLFEEMAQKGIFRD 408
           R  EA      + ++G  +D
Sbjct: 682 RMKEAEEFMSRIVEQGKLQD 701



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 66/207 (31%), Positives = 108/207 (52%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +   V++ G+      FN LI   C +        L+  M   +  PDN +Y  +++ LC
Sbjct: 199 IFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLC 258

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  K  EA  +  D+K  G +P+   +  ++ G CK+GWL +A ++   M    +LP+ +
Sbjct: 259 KKGKLNEARDLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVW 318

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYN +I G C+   ++EA RL  EM +       VTYNTLI G      + + + L ++M
Sbjct: 319 TYNMLIGGLCKDGKIDEAFRLKDEMENLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKM 378

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
             KG+  + +TYN +++ Y KEGK+ N
Sbjct: 379 EGKGVKPNAVTYNVVVKWYVKEGKMDN 405


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKMLEHLMKLRYFKLVWGFYEEILECGY 120

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G +P+ V +TT+I G C
Sbjct: 181 LKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 240

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++  M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 241 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 301 TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVD 352



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ R FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 91  TCRKMLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 150

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ +G          LI   C + K+
Sbjct: 151 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKM 210

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GL+P    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 211 DDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTL 270

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK+    +A+ + +++  +G  PD   YTT+I G CK G L  A K    MI + +
Sbjct: 271 IYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENI 330

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 331 RLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 390

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 391 LLKEMQRNGHAPSVVTYNVLMNG 413


>gi|224054827|ref|XP_002298371.1| predicted protein [Populus trichocarpa]
 gi|222845629|gb|EEE83176.1| predicted protein [Populus trichocarpa]
          Length = 915

 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 168/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +   V+   L   L + + F+V    MD +   GF P   +L   ++ L   G + +A
Sbjct: 291 GLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLRRKGKVVDA 350

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +++K++G   S+  +N+ +    K  + D    L+ ++ E G          LI +
Sbjct: 351 FDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDS 410

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+      L +++  G+      +N LI+  C+  N          M+ +   P 
Sbjct: 411 FCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPT 470

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+G C   K  EA+R+++++  +G  P+T  +TT+I  L +   + DA +++ 
Sbjct: 471 VVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFD 530

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ + ++PNE TYN MI G+C+  N  +A  L  +M+ KG    T TY  LI+ LC  G
Sbjct: 531 EMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTG 590

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  EA    +++ ++    + + Y+ L+ GYCKEG++
Sbjct: 591 RVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRL 627



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 160/336 (47%), Gaps = 10/336 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP-NPNSLELYIQCLCESGLIEEAFC 159
           G  PD+     +  S  E + F  A + +     S  N     + I  LC++  + EA  
Sbjct: 223 GIRPDIYIYVAVIRSFCELKNFAKAKEMIQRMESSDLNVVVYNVLIHGLCKNKRVWEAVE 282

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
             + L + G+  S  T+ + +LG  K+   ++   +  ++IE G+         L++   
Sbjct: 283 IKNGLIQKGLTASEVTYCTLVLGLCKVQEFEVGAGVMDEMIELGFVPTEAALSSLVEGLR 342

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GKV + ++L+ +V + G +P    +N LI+  C+   F     L   M  +    ++ 
Sbjct: 343 RKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDV 402

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+  C+  K   A      +   G       Y ++I+G CK+G L  A   + EM
Sbjct: 403 TYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEM 462

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I KGL P   +Y S+I GYC    L EA RL+ EM  KG    T T+ TLI+ L    R 
Sbjct: 463 IDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRM 522

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +A+ LF+EM ++ +  + +TYN +I+G+CKEG  V
Sbjct: 523 TDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTV 558



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 148/337 (43%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L   N L +SL +   F  A      +   G   N  +  + I   C  G ++ A
Sbjct: 361 GAMPSLFVYNALINSLCKDGKFDEAELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTA 420

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+   G+  ++  +NS + G  K+         + ++I+ G          LI  
Sbjct: 421 IHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISG 480

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN GK+ E + L  ++   G+ P    F  LIS             L   M+ +N  P+
Sbjct: 481 YCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPN 540

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G CK    ++A+ + N + ++G VPDT  Y  +I  LC  G + +A+K   
Sbjct: 541 EVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFID 600

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++  +    NE  Y++++HGYC+   L +A  + +EM+ +G     V Y  LI G     
Sbjct: 601 DLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQ 660

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T   + L + M  + +  D + Y ++I GY K G +
Sbjct: 661 DTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAGSV 697



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 155/334 (46%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P   + + L + L        A D ++     G  P+       I  LC+ G  +EA
Sbjct: 326 GFVPTEAALSSLVEGLRRKGKVVDAFDLVNRVKKVGAMPSLFVYNALINSLCKDGKFDEA 385

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ E G+  +  T++  +    +  + D        +I +G          LI  
Sbjct: 386 ELLFKEMGEKGLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLING 445

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +S       ++++ GL P   ++  LIS +C K        L H M  +  AP+
Sbjct: 446 HCKLGNLSAAVSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPN 505

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +I+ L ++ +  +A+R+F+++ E+  +P+ V Y  +I G CK G    A ++  
Sbjct: 506 TYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLN 565

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ KGL+P+ YTY  +I   C    + EAK+   ++  + +    + Y+ L+ G C  G
Sbjct: 566 QMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEG 625

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           R  +A  +  EM ++G+  D++ Y  LI G  KE
Sbjct: 626 RLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKE 659



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 156/337 (46%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+  +   L  +L  A     A    D        PN  +  + I+  C+ G   +A
Sbjct: 501 GIAPNTYTFTTLISALFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKA 560

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +++ + G+     T+   +       R     K   DL    +         L+  
Sbjct: 561 FELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHG 620

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G++ +   + R++++ G+  +   +  LI    ++++   V  LL  M  +   PD
Sbjct: 621 YCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPD 680

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+G  K+    +A+ +++ + + G  P+ V YTT+I+ LCK G +  A  +W 
Sbjct: 681 KVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWK 740

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+     PN  TY   +    R  ++E+A +LH +ML KG    TV+YN L+ G C  G
Sbjct: 741 EMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILVRGFCKLG 799

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R +EA  L +EM    IF D ITY+T+I   C+ G +
Sbjct: 800 RVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNL 836



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/406 (23%), Positives = 170/406 (41%), Gaps = 81/406 (19%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G   + V+ ++L DS         A+ FL      G           I   C+ G +  A
Sbjct: 396 GLCANDVTYSILIDSFCRRGKLDTAIHFLGKMIMAGIKITVYPYNSLINGHCKLGNLSAA 455

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+  ++ ++ S + G     +    ++LYH++   G          LI A
Sbjct: 456 VSFFDEMIDKGLKPTVVSYTSLISGYCNKGKLHEAFRLYHEMTGKGIAPNTYTFTTLISA 515

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                ++++ + L  ++LE  ++P    +N +I   C++ N  +  ELL+ MV +   PD
Sbjct: 516 LFRANRMTDAFRLFDEMLEQNMMPNEVTYNVMIEGHCKEGNTVKAFELLNQMVQKGLVPD 575

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I+ LC + +  EA +  +DL    +  + + Y+ ++HG CK G L DA  +  
Sbjct: 576 TYTYRPLISSLCSTGRVCEAKKFIDDLHREHFKLNEMCYSALLHGYCKEGRLRDALGVCR 635

Query: 329 EMIHKG-----------------------------------LLPNEYTYNSMIHGYCRID 353
           EM+ +G                                   L P++  Y SMI GY +  
Sbjct: 636 EMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMHDQRLRPDKVIYTSMIDGYSKAG 695

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM------------- 400
           ++++A  +   M+D+G     VTY TLI  LC  G  D+A  L++EM             
Sbjct: 696 SVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMDKAELLWKEMLVSNSTPNHVTYC 755

Query: 401 ---------------------AQKGIFRDVITYNTLIQGYCKEGKI 425
                                  KG+  + ++YN L++G+CK G++
Sbjct: 756 CFLDHLAREGSMEKAVQLHNDMLKGLLANTVSYNILVRGFCKLGRV 801



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 162/354 (45%), Gaps = 21/354 (5%)

Query: 89  SIRFFQWLHS--HYGFSPDLVSCNVLFDSLV------EARAFKVAMDFLDSTGFSPNPNS 140
           +++ F+ L+     G  PD  +   L  SL       EA+ F   +D L    F  N   
Sbjct: 557 TVKAFELLNQMVQKGLVPDTYTYRPLISSLCSTGRVCEAKKF---IDDLHREHFKLNEMC 613

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW------- 193
               +   C+ G + +A     ++ + GV   +  +   + G IK   T  V+       
Sbjct: 614 YSALLHGYCKEGRLRDALGVCREMVKRGVDMDLVCYAVLIDGTIKEQDTSAVFGLLKNMH 673

Query: 194 --KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             +L  D +    +I  +   G V + + +   ++++G  P    +  LI+  C+     
Sbjct: 674 DQRLRPDKVIYTSMIDGYSKAGSVKKAFGIWDIMIDEGCTPNIVTYTTLINELCKAGLMD 733

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +   L   M+  N  P++ TY   ++ L +     +A ++ ND+  +G + +TV Y  ++
Sbjct: 734 KAELLWKEMLVSNSTPNHVTYCCFLDHLAREGSMEKAVQLHNDML-KGLLANTVSYNILV 792

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G CK+G + +A K+  EMI   + P+  TY+++I+  CR  NL+ A      ML+KG  
Sbjct: 793 RGFCKLGRVEEATKLLDEMIDNAIFPDCITYSTIIYQCCRRGNLDGAIEFWDTMLNKGLK 852

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             T+ YN LI G C+ G   +A+ L ++M ++G+  +  T+ +L  G  ++  I
Sbjct: 853 PDTLAYNFLIYGCCIAGELGKAFELRDDMIRRGVKPNQATHKSLSHGASRKFSI 906



 Score = 71.2 bits (173), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 100/225 (44%), Gaps = 19/225 (8%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H  +    LI A  N         LL+ +L  G +     F  L+  F EK +F  +S L
Sbjct: 103 HSTMSFCILIHALVNANLFWPASSLLQTLLLRGGLDPREVFEALLDCF-EKCDF--ISSL 159

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
                          ++ +I    + ++  ++  +F  +++   +P       V++GL K
Sbjct: 160 --------------GFDLLIQSYVQEKRMFDSVLIFRLMRQCELMPQVRTLGEVLNGLAK 205

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +  +     ++ E++  G+ P+ Y Y ++I  +C + N  +AK + + M  +      V 
Sbjct: 206 IRRVDMVLVLFGEILSMGIRPDIYIYVAVIRSFCELKNFAKAKEMIQRM--ESSDLNVVV 263

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN LI GLC + R  EA  +   + QKG+    +TY TL+ G CK
Sbjct: 264 YNVLIHGLCKNKRVWEAVEIKNGLIQKGLTASEVTYCTLVLGLCK 308


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ES  + +A   +   +E   +    T    L   +K+    LVW  Y  ++E GY
Sbjct: 75  ITAYLESEFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKXILECGY 134

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 135 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 194

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 195 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 254

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++  M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 255 KNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 314

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 315 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVD 366



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F         P SL  +   +   C+ G I  A   F  +
Sbjct: 105 TCRKVLEHLMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 164

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 165 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 224

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 225 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTL 284

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 285 IYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 344

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 345 XLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSK 404

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 405 LLKEMQRDGHVPSVVTYNVLMNG 427


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    E+G + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 76  ITAYLETGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 135

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 136 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFR 195

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G +P+ V +TT+I G C
Sbjct: 196 LKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 255

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++  M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG      
Sbjct: 256 KNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKF 315

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 316 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVD 367



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 153/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 106 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 165

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG L         I   C + K+
Sbjct: 166 TKWGLRPSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKM 225

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GL+P    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 226 DDANELFDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTL 285

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 286 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 345

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +   
Sbjct: 346 RLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 405

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 406 LLKEMQRNGHAPSVVTYNVLMNG 428


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y D +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEDSLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ +    +      
Sbjct: 133 PASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K   A  +FN++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     V
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKV 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++   L   L    +A      +D +   G  PN  +  + +  LC+ G I+ A
Sbjct: 110 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 169

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K++   +   +  +N+ +    K    D    L+ ++   G          LI  
Sbjct: 170 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 229

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G+ S+  +LL  ++E  + P    FN LI  F ++  F    +L   M+ R+  PD
Sbjct: 230 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 289

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C   +  +A ++F  +  +   PD   Y T+I G CK   + D  +++ 
Sbjct: 290 IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFR 349

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM H+GL+ +  TY ++I G     + + A+++ K+M+  G     +TY+ L+ GLC +G
Sbjct: 350 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 409

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +F+ M +  I  D+  Y T+I+G CK GK+
Sbjct: 410 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 446



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 170/335 (50%), Gaps = 14/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P+LV+  V+ + L +     +A + L+    +     + ++   I  LC+   +++A
Sbjct: 145 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 204

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 205 LNLFKEMETKGIRPNVVTY-SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 263

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK  E  +L   +++  + P+   +N LI+ FC      +  ++   MV+++  P
Sbjct: 264 AFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP 323

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I G CKS++  +   +F ++  RG V DTV YTT+I GL   G   +A+K++
Sbjct: 324 DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 383

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  G+ P+  TY+ ++ G C    LE+A  +   M           Y T+I G+C  
Sbjct: 384 KQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 443

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G+ D+ + LF  ++ KG+  +V+TYNT+I G C +
Sbjct: 444 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 478



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 161/371 (43%), Gaps = 47/371 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +   N L  ++ + + F + +     +   G S N  +  + I C C    I  A   
Sbjct: 8   PSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALAL 67

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G   SI T +S L G     R      L   ++E GY         LI     
Sbjct: 68  LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 127

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K SE   L+ ++++ G  P    +  +++  C++ +      LL+ M A     D   
Sbjct: 128 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVI 187

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+ LCK R   +A  +F +++ +G  P+ V Y+++I  LC  G   DA ++  +MI
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 332 HKGLLPNE-----------------------------------YTYNSMIHGYCRIDNLE 356
            K + PN                                    +TYNS+I+G+C  D L+
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +AK++ + M+ K       TYNTLI G C   R ++   LF EM+ +G+  D +TY TLI
Sbjct: 308 KAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 367

Query: 417 QGYCKEGKIVN 427
           QG   +G   N
Sbjct: 368 QGLFHDGDCDN 378



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 148/343 (43%), Gaps = 47/343 (13%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESG--------- 152
           D+V  N + DSL + R    A++    +++ G  PN  +    I CLC  G         
Sbjct: 184 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 243

Query: 153 --LIE--------------EAFCAFSKLKEM----------GVFGSIKTWNSALLGCIKI 186
             +IE              +AF    K  E            +   I T+NS + G    
Sbjct: 244 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 303

Query: 187 DRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           DR D   +++          DL     LI+ FC   +V +G EL R++   GLV +   +
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             LI       +     ++   MV+    PD  TY  +++GLC + K  +A  VF+ +++
Sbjct: 364 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 423

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
                D  +YTT+I G+CK G + D   ++  +  KG+ PN  TYN+MI G C    L+E
Sbjct: 424 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 483

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           A  L K+M + G    + TYNTLI      G    +  L  EM
Sbjct: 484 AYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 92/191 (48%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           +P    FNKL+S   + K F  V  L   M     + + +TY  +IN  C+  +   A  
Sbjct: 7   LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALA 66

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +   + + GY P  V  +++++G C    + DA  +  +M+  G  P+  T+ ++IHG  
Sbjct: 67  LLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLF 126

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
             +   EA  L   M+ +G     VTY  ++ GLC  G  D A++L  +M    I  DV+
Sbjct: 127 LHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVV 186

Query: 411 TYNTLIQGYCK 421
            +NT+I   CK
Sbjct: 187 IFNTIIDSLCK 197



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 84/166 (50%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P  F + ++++ + K +K      +   ++  G   +   Y  +I+  C+   
Sbjct: 1   MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A  +  +M+  G  P+  T +S+++GYC    + +A  L  +M++ GY   T+T+ T
Sbjct: 61  ISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTT 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GL LH +  EA  L + M Q+G   +++TY  ++ G CK G I
Sbjct: 121 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDI 166


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           + +G   D+VS N +   L  A+ +    + +D       +PN  +    I  LC +GL 
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGYL 205
           E      +++ E G    I+ + + + G  K    ++          + L  +++    +
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV 327

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C+  +  E  ELL ++ +     ++  FN L+  FC+     RV ELL  M++   
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  VING CK     EA  +   +   G  P+TV YT V+ GLC  G   DA +
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +MI +G  PN  T+N++I+  C+   +E+A  L K+ML  G     ++Y+T+I GL 
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+T+EA  L   M  KGI  + I Y+++     +EG++
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 113/221 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ A C  G V E   LLR++   G   +  ++N ++   C  K +G V EL+  MV  +
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP+  T+  +I  LC++      + V   + E G  PD  MY T+I G+CK G L  A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M   GL PN   YN+++ G C  +  +EA+ L  EM  K      VT+N L+   
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C +G  D    L E+M   G   DVITY T+I G+CKEG I
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 158/335 (47%), Gaps = 20/335 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+ N L   L     F+   + L      G +P+       I  +C+ G +E A  
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE 307

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------LI 206
             +++   G+  ++  +N+ L G    +R    WK   +L+   +             L+
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAER----WKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC +G V    ELL Q+L  G +P+   +  +I+ FC++        LL +M +    
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +Y  V+ GLC + + ++A  + + + ++G  P+ V + T+I+ LCK G +  A ++
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIEL 483

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+  G  P+  +Y+++I G  +    EEA  L   M++KG    T+ Y+++   L  
Sbjct: 484 LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR ++   +F+ +    I  D + YN +I   CK
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 143/333 (42%), Gaps = 29/333 (8%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G +P     +V+ ++   +  F+ ++  L++    G + +  +  L +  +CE G +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           +EA     KL   G    I ++N+ L G                           C   +
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKG--------------------------LCMAKR 231

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
             +  EL+ +++     P    FN LI   C    F RV E+L  M      PD   Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G+CK      A  + N +   G  P+ V Y TV+ GLC      +A ++  EM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              ++ T+N ++  +C+   ++    L ++ML  G     +TY T+I G C  G  DEA 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L + M+  G   + ++Y  +++G C  G+ V+
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVD 444



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N +   L  A  +K A + L        P    +  + +   C++GL++ 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++   G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ G+  +  EL+ Q+++ G  P    FN LI+  C+K    +  ELL  M+    +P
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G +    +M+
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    + A      M+  G      TY  LI GL   
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  L  E+  +G  R
Sbjct: 615 GLAKEAQELLSELCSRGALR 634



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 95/217 (43%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C  G++++  E+L ++   G  P    ++ ++   C    F     +L  M A+ 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D      V+N +C+     EA  +   L   G   D V Y  V+ GLC     GD  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+     PN  T+N++I   CR    E    +  +M + G       Y T+I G+
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           C  G  + A  +   M   G+  +V+ YNT+++G C 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 1/196 (0%)

Query: 231 VPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           VP N   F  ++   C +       E+L  M  +  AP    Y  ++   C+S     + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           RV   +  +G   DT     V++ +C+ G + +A  +  ++   G   +  +YN+++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C      + + L  EM+        VT+NTLI  LC +G  +  + +  +M++ G   D+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 410 ITYNTLIQGYCKEGKI 425
             Y T+I G CKEG +
Sbjct: 287 RMYATIIDGICKEGHL 302



 Score = 42.0 bits (97), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+M+ GYCR   L  A+RL   +          T+  ++ GLC  GR  +A  + +EM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + KG       Y+ +++  C+ G   N
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRN 164


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 159/339 (46%), Gaps = 38/339 (11%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           + LH H       F  + VS   L + L +    + A+  L   +     PN       I
Sbjct: 98  KLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAII 157

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             LC+  L+ EA+  +S++    +F ++ T+N+                          L
Sbjct: 158 DGLCKDKLVNEAYDLYSEMDAREIFPNVITYNT--------------------------L 191

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-EKKNFGRVSELLHTMVARN 264
           I AFC  G++   + LL +++   + P+   F+ LI   C E KN     ++ H MV   
Sbjct: 192 ICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKN---AKQIFHAMVQMG 248

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+ ++Y  +INGLCK ++  EA  +  ++  +  VPDTV Y ++I GLCK G +  A 
Sbjct: 249 VNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSAL 308

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM H+G   +  TY S++   C+  NL++A  L  +M ++G   T  TY  LI GL
Sbjct: 309 NLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGL 368

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  GR   A  LF+ +  KG   DV TY  +I G CKEG
Sbjct: 369 CKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEG 407



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 163/333 (48%), Gaps = 19/333 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP ++  N +  SLV+ + +   +     +D  G   N  +L + I C C  G +  +F 
Sbjct: 8   SP-IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFS 66

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES----------GYLIQA 208
              K+ ++G   +  TW + + G C+K +   L+   +HD + +          G L+  
Sbjct: 67  LLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLH--FHDKVVAQAFQTNQVSYGTLLNG 124

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+     +LLR + +    P    ++ +I   C+ K      +L   M AR   P+
Sbjct: 125 LCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPN 184

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I   C + + + A+ + +++  +   PD   ++ +I  LCK G   +A++++ 
Sbjct: 185 VITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEG--KNAKQIFH 242

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  G+ PN Y+YN MI+G C+   ++EA  L +EML K     TVTYN+LI GLC  G
Sbjct: 243 AMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSG 302

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           R   A +L  EM  +G   DV+TY +L+   CK
Sbjct: 303 RITSALNLMNEMHHRGQPADVVTYTSLLDALCK 335



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 96/190 (50%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FNK++    + K +  V  L   M  +    +  T   +IN  C   +   ++ +   + 
Sbjct: 13  FNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKIL 72

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           + GY P+T+ +TT++ GLC  G +        +++ +    N+ +Y ++++G C+     
Sbjct: 73  KLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETR 132

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A +L + + D+      V Y+ +I GLC     +EAY L+ EM  + IF +VITYNTLI
Sbjct: 133 CAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLI 192

Query: 417 QGYCKEGKIV 426
             +C  G+++
Sbjct: 193 CAFCLAGQLM 202



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 96/205 (46%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            L +Q+   G+       + LI+ FC          LL  ++     P+  T+  ++ GL
Sbjct: 31  SLSKQMDVKGIEQNLVTLSILINCFCHLGQMAFSFSLLGKILKLGYXPNTITWTTLMKGL 90

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C   +  +     + +  + +  + V Y T+++GLCK G    A K+   +  +   PN 
Sbjct: 91  CLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLNGLCKTGETRCAIKLLRMIEDRSTRPNV 150

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
             Y+++I G C+   + EA  L+ EM  +      +TYNTLI   CL G+   A+ L  E
Sbjct: 151 VMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHE 210

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGK 424
           M  K I  DV T++ LI   CKEGK
Sbjct: 211 MILKNINPDVYTFSILIDALCKEGK 235



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 12/256 (4%)

Query: 93  FQWLHSHY--GFSPDLVSCNVLFDSLV-EARAFKVAMDFLDSTGFSPNPNSLELYIQCLC 149
           F  LH       +PD+ + ++L D+L  E +  K     +   G +PN  S  + I  LC
Sbjct: 205 FSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFHAMVQMGVNPNVYSYNIMINGLC 264

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH-----DLI 200
           +   ++EA     ++    +     T+NS + G  K  R     +L+ +++H     D++
Sbjct: 265 KCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVV 324

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+ A C +  + +   L  ++ E G+ P    +  LI   C+        EL   +
Sbjct: 325 TYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 384

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           + +    D +TY  +I+GLCK     EA  + + +++ G +P+ V +  +I  L +    
Sbjct: 385 LVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDEN 444

Query: 321 GDARKMWFEMIHKGLL 336
             A K+  EMI KGLL
Sbjct: 445 DKAEKLLHEMIAKGLL 460


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           + +G   D+VS N +   L  A+ +    + +D       +PN  +    I  LC +GL 
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E      +++ E G    I+ + + + G  K    ++  ++ + +   G          +
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV 327

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C+  +  E  ELL ++ +     ++  FN L+  FC+     RV ELL  M++   
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  VING CK     EA  +   +   G  P+TV YT V+ GLC  G   DA +
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +MI +G  PN  T+N++I+  C+   +E+A  L K+ML  G     ++Y+T+I GL 
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+T+EA  L   M  KGI  + I Y+++     +EG++
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 113/221 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ A C  G V E   LLR++   G   +  ++N ++   C  K +G V EL+  MV  +
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP+  T+  +I  LC++      + V   + E G  PD  MY T+I G+CK G L  A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M   GL PN   YN+++ G C  +  +EA+ L  EM  K      VT+N L+   
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C +G  D    L E+M   G   DVITY T+I G+CKEG I
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 158/335 (47%), Gaps = 20/335 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+ N L   L     F+   + L      G +P+       I  +C+ G +E A  
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE 307

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------LI 206
             +++   G+  ++  +N+ L G    +R    WK   +L+   +             L+
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAER----WKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC +G V    ELL Q+L  G +P+   +  +I+ FC++        LL +M +    
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +Y  V+ GLC + + ++A  + + + ++G  P+ V + T+I+ LCK G +  A ++
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIEL 483

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+  G  P+  +Y+++I G  +    EEA  L   M++KG    T+ Y+++   L  
Sbjct: 484 LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR ++   +F+ +    I  D + YN +I   CK
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 143/333 (42%), Gaps = 29/333 (8%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G +P     +V+ ++   +  F+ ++  L++    G + +  +  L +  +CE G +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           +EA     KL   G    I ++N+ L G                           C   +
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKG--------------------------LCMAKR 231

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
             +  EL+ +++     P    FN LI   C    F RV E+L  M      PD   Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G+CK      A  + N +   G  P+ V Y TV+ GLC      +A ++  EM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              ++ T+N ++  +C+   ++    L ++ML  G     +TY T+I G C  G  DEA 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L + M+  G   + ++Y  +++G C  G+ V+
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVD 444



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N +   L  A  +K A + L        P    +  + +   C++GL++ 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++   G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ G+  +  EL+ Q+++ G  P    FN LI+  C+K    +  ELL  M+    +P
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G +    +M+
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    + A      M+  G      TY  LI GL   
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  L  E+  +G  R
Sbjct: 615 GLAKEAQELLSELCSRGALR 634



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 95/217 (43%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C  G++++  E+L ++   G  P    ++ ++   C    F     +L  M A+ 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D      V+N +C+     EA  +   L   G   D V Y  V+ GLC     GD  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+     PN  T+N++I   CR    E    +  +M + G       Y T+I G+
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           C  G  + A  +   M   G+  +V+ YNT+++G C 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 1/196 (0%)

Query: 231 VPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           VP N   F  ++   C +       E+L  M  +  AP    Y  ++   C+S     + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           RV   +  +G   DT     V++ +C+ G + +A  +  ++   G   +  +YN+++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C      + + L  EM+        VT+NTLI  LC +G  +  + +  +M++ G   D+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 410 ITYNTLIQGYCKEGKI 425
             Y T+I G CKEG +
Sbjct: 287 RMYATIIDGICKEGHL 302



 Score = 41.6 bits (96), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+M+ GYCR   L  A+RL   +          T+  ++ GLC  GR  +A  + +EM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + KG       Y+ +++  C+ G   N
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRN 164


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 163/343 (47%), Gaps = 12/343 (3%)

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCES 151
           W+      SPD  +C  + + LV  R F    V    + S G  P+ +   +  QC  + 
Sbjct: 153 WVSREMKCSPDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQ 212

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------ 205
           GL  +      ++  +G+  ++  +   +L   + ++ +   K++  + + G L      
Sbjct: 213 GLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTY 272

Query: 206 ---IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
              I  +C  G V + Y L +++L   L+P    F  L+  FC+ +       L   MV 
Sbjct: 273 SAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVK 332

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               P+ + Y  +I+G CKS   LEA  + ++++     PD   YT +I+GLC    + +
Sbjct: 333 FGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAE 392

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ +M ++ + P+  TYNS+IHGYC+  N+E+A  L  EM   G     +T++TLI 
Sbjct: 393 ANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLID 452

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C       A  L+ EM  KGI  DV+TY  LI  + KE  +
Sbjct: 453 GYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANM 495



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+    VLF    +   +      LD   S G  PN     +YI  LC    +EEA
Sbjct: 194 GLVPDVHIYFVLFQCCFKQGLYSKKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEA 253

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F  +K+ GV  ++ T+++ + G  K       + LY +++ +         G L+  
Sbjct: 254 EKMFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDG 313

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   ++     L   +++ G+ P    +N LI   C+  N      LL  M + N +PD
Sbjct: 314 FCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPD 373

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +INGLC   +  EA R+F  +K     P +  Y ++IHG CK   +  A  +  
Sbjct: 374 VFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCS 433

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G+ PN  T++++I GYC + +++ A  L+ EM  KG     VTY  LI       
Sbjct: 434 EMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEA 493

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA  L+ +M + GI  +  T+  L+ G+ KEG++
Sbjct: 494 NMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRL 530



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 96/195 (49%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P++ A   +++    ++ F  V      M++R   PD   Y  +     K     +  ++
Sbjct: 162 PDSKACLSILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYSKKEKL 221

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            +++   G  P+  +YT  I  LC+   + +A KM+  M   G+LPN YTY++MI GYC+
Sbjct: 222 LDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMIDGYCK 281

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             N+ +A  L+KE+L        V + TL+ G C       A  LF  M + G+  ++  
Sbjct: 282 TGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYV 341

Query: 412 YNTLIQGYCKEGKIV 426
           YN LI G+CK G ++
Sbjct: 342 YNCLIHGHCKSGNML 356



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 74/337 (21%), Positives = 136/337 (40%), Gaps = 18/337 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELYI-QCL----CESGLIEEA 157
           P++V    L D   +AR    A   F+    F  +PN   LY+  CL    C+SG + EA
Sbjct: 302 PNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPN---LYVYNCLIHGHCKSGNMLEA 358

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
               S+++ + +   + T+   + G    D+     +L+  +              LI  
Sbjct: 359 VGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHG 418

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +  + +  +L  ++   G+ P    F+ LI  +C  ++      L   M  +   PD
Sbjct: 419 YCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPD 478

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+   K     EA R+++D+ E G  P+   +  ++ G  K G L  A   + 
Sbjct: 479 VVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFYQ 538

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E   +    N   +  +I G C+   +  A R   +M   G      +Y +++ G     
Sbjct: 539 ENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHLQEK 598

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R  +   L  +M + GI  +++    L + Y   G +
Sbjct: 599 RITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYV 635


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E        T    L   +K+    LVW  Y +++E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ +  + +  +   
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  EA  +F ++ ++G VP+ V +TT+I G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVD 364


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 152/314 (48%), Gaps = 10/314 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AF V  + +   G   N  S    I  LCE G ++E    F K++E   + +++T+   +
Sbjct: 23  AFSV-FNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVIV 81

Query: 181 LGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
               +  R      L+ ++ E G          +I A C + K+ EG  +L +++E GLV
Sbjct: 82  HALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLV 141

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    +N LI  +C++       E+L  M + +  P+  TY E+I G C+ +    A  +
Sbjct: 142 PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMAL 201

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            + + E    P  V Y ++IHG CK+G+L  A ++   M   G++P+++TY+  I   C+
Sbjct: 202 LSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCK 261

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +EEA  L   + +KG     V Y  LI G C  G+ D+A  L + M  +    +  T
Sbjct: 262 KGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSST 321

Query: 412 YNTLIQGYCKEGKI 425
           YN LI G CKE K+
Sbjct: 322 YNALIDGLCKERKV 335



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 141/297 (47%), Gaps = 9/297 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P   +  + +  L ESG   EA   FS+++E G   +I T+   +    K  + +   ++
Sbjct: 72  PTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRI 131

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             +++E G          LI  +C +G V    E+L  +  +   P    +N+LI  FC 
Sbjct: 132 LDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCR 191

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           KKN  R   LL  M+     P   TY  +I+G CK      AYR+ N + E G VPD   
Sbjct: 192 KKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWT 251

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+  I  LCK G + +A  ++  +  KG+  NE  Y ++I GYC+   +++A  L   ML
Sbjct: 252 YSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRML 311

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +     + TYN LI GLC   +  EA  L E M QKG+   V TY  LI    KEG
Sbjct: 312 TEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEG 368



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 141/303 (46%), Gaps = 11/303 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN ++  + I  +C+   +EE      ++ E G+  S+ T+N+ + G  K    +  
Sbjct: 104 GCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAA 163

Query: 193 WKLYHDLIESGY----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
            ++  DL+ S            LI  FC    V     LL ++LE  L P    +N LI 
Sbjct: 164 QEIL-DLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIH 222

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C+         LL+ M      PD +TY   I+ LCK  +  EA  +FN LKE+G   
Sbjct: 223 GQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKA 282

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           + V+YT +I G CK G + DA  +   M+ +  LPN  TYN++I G C+   ++EA  L 
Sbjct: 283 NEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLM 342

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           + M+ KG   T  TY  LI  +   G  D A+ + ++M   G   DV  Y   I  +C  
Sbjct: 343 ESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTR 402

Query: 423 GKI 425
           G I
Sbjct: 403 GNI 405



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + + N L D   +    + A + LD   S   +PN  +    I   C    +  A
Sbjct: 139 GLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRA 198

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
               SK+ E  +  S+ T+NS + G  KI   D  ++L + + E+G +         I  
Sbjct: 199 MALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSVFIDT 258

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E   L   + E G+      +  LI  +C+       + LL  M+  +  P+
Sbjct: 259 LCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPN 318

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GLCK RK  EA  +   + ++G       YT +I  + K G    A ++  
Sbjct: 319 SSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILD 378

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G  P+ Y Y + IH +C   N++EA+ +   M ++G     +TY  +I      G
Sbjct: 379 QMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLG 438

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             + A+ + + M   G      TY+ LI+   KE
Sbjct: 439 LLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKE 472



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 85/364 (23%), Positives = 148/364 (40%), Gaps = 41/364 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G   + V    L D   +A     A   LD   +    PN ++    I  LC+   ++EA
Sbjct: 279 GIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEA 338

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + G+  ++ T+   ++  +K    D   ++   ++ SGY          I A
Sbjct: 339 LLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHA 398

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + E  +++  + E G++P+   +  +I  +          ++L  M      P 
Sbjct: 399 FCTRGNIKEAEDMMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPS 458

Query: 269 NFTYEEVIN--------------GLCKSRKRL---------------EAYRVFNDLKERG 299
           + TY  +I                LC S   +                A  +F  + E G
Sbjct: 459 HHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHG 518

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P+   Y  +I GLCK+G LG A+K++  M  +G+ P+E  YNS+++  C +    +A 
Sbjct: 519 CSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAV 578

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           RL   M++ G+     + N L  GL   G  ++A  +F  + Q G   D + +  LI G 
Sbjct: 579 RLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGL 638

Query: 420 CKEG 423
            K G
Sbjct: 639 LKNG 642



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 9/89 (10%)

Query: 345 MIHGYCRIDNLEEAK---------RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           M++GYC++ NL EA           +   M  KG     V+Y  LI GLC  GR DE  +
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +F++M +   +  V TY  ++    + G+
Sbjct: 61  IFKKMREDDCYPTVRTYTVIVHALFESGR 89



 Score = 44.7 bits (104), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 97/247 (39%), Gaps = 34/247 (13%)

Query: 36  SQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQW 95
           S   Y+ + K + K   TK      L   IP+  F D     + +K +     ++  F+ 
Sbjct: 458 SHHTYSCLIKHLLKEELTKKYKNVALCDSIPNVFFADVADVWKMMKFET----ALELFEK 513

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESG 152
           +  H G SP++ +   L   L +     VA    D ++  G SP+       + C CE G
Sbjct: 514 MLEH-GCSPNINTYAKLIIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELG 572

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
           +  +A      + E G    +++ N    G  +    +    ++ +L++ GY      ND
Sbjct: 573 IYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGY------ND 626

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            +V+       ++L DGL+         +S  C        SELL  M AR       TY
Sbjct: 627 DEVA------WKILIDGLLKNG------LSDGC--------SELLGVMEARGCQIHPQTY 666

Query: 273 EEVINGL 279
             +I GL
Sbjct: 667 RMLIEGL 673


>gi|357485461|ref|XP_003613018.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355514353|gb|AES95976.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 894

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 155/314 (49%), Gaps = 10/314 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           A+KV  + +   G   N  S    I   CE G I+EA   F ++KE G F  + T+   +
Sbjct: 244 AYKV-FEIMPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLV 302

Query: 181 LGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
               ++ +     K + +++E+G          LI  FC  GK+ EG E+L  +LE GLV
Sbjct: 303 AAFCEVGKETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLV 362

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
                FN LI  +C++        +L +M      P++ TY E+I G C+ +    A  +
Sbjct: 363 SSVVPFNALIDGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMAL 422

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            N + E    P+ V Y T+IHGLCK   +  A ++   MI  G +P++ T+ + I   C+
Sbjct: 423 LNKMYENKLSPNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCK 482

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +  +E+A ++ + + +K        Y  LI G C   +  +A+ LF+ M  +G F + IT
Sbjct: 483 MGKVEQAHQVFESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSIT 542

Query: 412 YNTLIQGYCKEGKI 425
           +N L+ G  KEGK+
Sbjct: 543 FNVLLDGLRKEGKV 556



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 110/431 (25%), Positives = 182/431 (42%), Gaps = 59/431 (13%)

Query: 3   RAPFSVLTILRQNPRNFQNPNTQLRNLSIETKES---QQLYTEIAKQVCKITRTKPRWEQ 59
           R    + T+L  N    QN N  L +L ++   S     L  ++  Q+  I   +P+W +
Sbjct: 2   RKSKPLFTLLHHN----QNQNQNLFHLLLKPFSSLSPNSLQQDLPSQIFTIL-LQPQWRK 56

Query: 60  TLLSDIPSFNFNDPLFFREFLKQQNN-----VLLSIRFFQWLHSHYGFSPDLVSCNVLFD 114
                 PSFN   P      L    N      L ++ FF+W+H  +GF   + S   L  
Sbjct: 57  N-----PSFNTLIPSLTPTHLSSLFNNPNLHPLTALNFFKWIHYQHGFIHTVHSYQPLLF 111

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
            LV     + A +  +S   S             C S    EA    + L       S+ 
Sbjct: 112 ILVRNGFLRAAENVRNSMIKS-------------CVSS--HEARFVLNLLTHHEFSLSVT 156

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           ++N                +L+  L   G + +  C          L + +L DG+ P  
Sbjct: 157 SYN----------------RLFMVLSRFGLIDELNC----------LFKDMLNDGVEPNL 190

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            +FN +++  C+  N          ++      D+FTY  +I G CK  +  +AY+VF  
Sbjct: 191 ISFNTMVNAHCKIGNVVVAKAYFCGLMKFGFCCDSFTYTSLILGYCKIHELGDAYKVFEI 250

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + + G + + V YT +IHG C++G + +A +++F+M   G  P+  TY  ++  +C +  
Sbjct: 251 MPQEGCLRNEVSYTNLIHGFCEVGKIDEALELFFQMKEDGCFPDVPTYTVLVAAFCEVGK 310

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
             EA +  +EM++ G      TY  LI   C  G+ DE   +   M +KG+   V+ +N 
Sbjct: 311 ETEALKFFEEMVENGIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNA 370

Query: 415 LIQGYCKEGKI 425
           LI GYCK G +
Sbjct: 371 LIDGYCKRGMM 381



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 83/349 (23%), Positives = 154/349 (44%), Gaps = 13/349 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +++FF+ +  + G  P++ +  VL D   +       M+ L +    G   +       I
Sbjct: 314 ALKFFEEMVEN-GIEPNVYTYTVLIDYFCKVGKMDEGMEMLSTMLEKGLVSSVVPFNALI 372

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIK--IDRT-DLVWKLYHD--- 198
              C+ G++E+A C    +K   V  + +T+N  + G C K  +DR   L+ K+Y +   
Sbjct: 373 DGYCKRGMMEDAICVLDSMKLNKVCPNSRTYNELICGFCRKKSMDRAMALLNKMYENKLS 432

Query: 199 --LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
             L+    LI   C    V   + L   +++DG VP+   F   I   C+     +  ++
Sbjct: 433 PNLVTYNTLIHGLCKARVVDSAWRLHHLMIKDGFVPDQRTFCAFIDCLCKMGKVEQAHQV 492

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             ++  ++   + F Y  +I+G CK+ K  +A+ +F  +   G  P+++ +  ++ GL K
Sbjct: 493 FESLKEKHAEANEFLYTALIDGYCKAEKFSDAHLLFKRMLFEGCFPNSITFNVLLDGLRK 552

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + DA  +   M      P  +TY  +I    R  + + A     +M+  G     VT
Sbjct: 553 EGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVT 612

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y   I   C  GR  EA  +  ++ ++GI  D   Y+ L+  Y   G++
Sbjct: 613 YTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNAYGCIGQL 661



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 141/325 (43%), Gaps = 19/325 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P + +  +L + ++    F  A  FLD   S+G  PN  +   +I+  C  G + EA   
Sbjct: 573 PTVHTYTILIEEILRESDFDRANMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEM 632

Query: 161 FSKLKEMGVFGSIKTWNSAL--LGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
             K+KE G+      ++  +   GCI   + D  + +   + ++G      C   + +  
Sbjct: 633 VVKIKEEGILLDSFIYDVLVNAYGCI--GQLDSAFGVLIRMFDTG------CEPSRQTYS 684

Query: 219 YELLRQVLED------GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
             L   + E       GL   +T  +   +   +  +F  ++ L   MV +   P+  TY
Sbjct: 685 ILLKHLIFEKYNKEGMGLDLNSTNISVDNANIWKIADFEIITMLFEKMVEQGCVPNVNTY 744

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
            ++I GLCK      A+R+FN +KE G  P   ++ +++   CK+G   +A ++   M+ 
Sbjct: 745 SKLIKGLCKVEHLSLAFRLFNHMKESGISPSENIHNSLLSSCCKLGMHEEALRLLDSMME 804

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
              L +  +Y  ++ G     N E+A+ + + +L  GY    V +  L+ GL   G  DE
Sbjct: 805 YNHLAHLESYKLLVCGLFEQGNQEKAEEIFRSLLSCGYNYDEVVWKVLLDGLVRKGYVDE 864

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQ 417
              L + M + G      T+  L Q
Sbjct: 865 CSQLRDIMEKTGCRLHSDTHTMLSQ 889



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/328 (20%), Positives = 135/328 (41%), Gaps = 35/328 (10%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +  + +  L + G +E+A      + +     ++ T+   +   ++    D  
Sbjct: 535 GCFPNSITFNVLLDGLRKEGKVEDAMSLVDVMGKFDAKPTVHTYTILIEEILRESDFDRA 594

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
                 +I SG           I+A+C  G++ E  E++ ++ E+G++ ++  ++ L++ 
Sbjct: 595 NMFLDQMISSGCQPNVVTYTAFIKAYCRQGRLLEAEEMVVKIKEEGILLDSFIYDVLVNA 654

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY-------------- 289
           +           +L  M      P   TY  ++  L   +   E                
Sbjct: 655 YGCIGQLDSAFGVLIRMFDTGCEPSRQTYSILLKHLIFEKYNKEGMGLDLNSTNISVDNA 714

Query: 290 ------------RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                        +F  + E+G VP+   Y+ +I GLCK+  L  A +++  M   G+ P
Sbjct: 715 NIWKIADFEIITMLFEKMVEQGCVPNVNTYSKLIKGLCKVEHLSLAFRLFNHMKESGISP 774

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +E  +NS++   C++   EEA RL   M++  +     +Y  L+ GL   G  ++A  +F
Sbjct: 775 SENIHNSLLSSCCKLGMHEEALRLLDSMMEYNHLAHLESYKLLVCGLFEQGNQEKAEEIF 834

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +   G   D + +  L+ G  ++G +
Sbjct: 835 RSLLSCGYNYDEVVWKVLLDGLVRKGYV 862



 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 4/104 (3%)

Query: 324 RKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           + + F ++  G L   E   NSMI       +  EA+ +   +    +  +  +YN L  
Sbjct: 107 QPLLFILVRNGFLRAAENVRNSMIKSCV---SSHEARFVLNLLTHHEFSLSVTSYNRLFM 163

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            L   G  DE   LF++M   G+  ++I++NT++  +CK G +V
Sbjct: 164 VLSRFGLIDELNCLFKDMLNDGVEPNLISFNTMVNAHCKIGNVV 207


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 163/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + L  ++ + + ++  +     ++  G S +  S    I C C    +  A   
Sbjct: 71  PSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLIDCFCRCSRLSLALSC 130

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G   SI T+ S + G   ++R      L   ++  GY         +I + C 
Sbjct: 131 LGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCE 190

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + +V    ++L  + + G+ P+   +N LI+R      +G  + +L  M+     PD  T
Sbjct: 191 NRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVIT 250

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+   K  + LEA + ++++ +R   P+ V Y ++I+GLC  G L +A+K+   M+
Sbjct: 251 FSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMV 310

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TYN++++GYC+   +++A ++   M   G    T TYNTL  G C  G+ +
Sbjct: 311 SKGFFPNAVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFN 370

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  +   M   G+  D+ T+N L+ G C+ GKI
Sbjct: 371 AAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKI 404



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 137/279 (49%), Gaps = 9/279 (3%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLI 206
           +A   F  + E     SI  ++  L+   K+ + + V  L+         HDL     LI
Sbjct: 56  DALTLFCDMAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTLI 115

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC   ++S     L ++++ G  P    F  L++ FC          L+  +V     
Sbjct: 116 DCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYE 175

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+   Y  +I+ LC++R+   A  V N +++ G  PD + Y ++I  L   G  G + ++
Sbjct: 176 PNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARI 235

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+  G+ P+  T+++MI  + +   L EAK+ + EM+ +      VTYN+LI GLC+
Sbjct: 236 LSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCI 295

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           HG  DEA  +   M  KG F + +TYNTL+ GYCK  ++
Sbjct: 296 HGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRV 334



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/330 (25%), Positives = 159/330 (48%), Gaps = 12/330 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +V+   L +        + AM  +D     G+ PN       I  LCE+  ++ A
Sbjct: 138 GFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTA 197

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + +++MG+   + T+NS +       +  +  ++  D++  G          +I  
Sbjct: 198 LDVLNHMEKMGIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDV 257

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +G++ E  +   ++++  + P    +N LI+  C         ++L+ MV++   P+
Sbjct: 258 FGKEGQLLEAKKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPN 317

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NG CKS++  +A ++   +   G   DT  Y T+  G C+ G    A K+  
Sbjct: 318 AVTYNTLVNGYCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLA 377

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  G+LP+ YT+N ++ G C    +E+A    +++         +TYN +I G+C   
Sbjct: 378 RMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKAN 437

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           + ++A++LF  +A KG+  DVITY T++ G
Sbjct: 438 KVEDAWYLFCSLALKGVSPDVITYTTMMIG 467



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/277 (23%), Positives = 126/277 (45%), Gaps = 12/277 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L   L  +  + V+   L      G  P+  +    I    + G + EA
Sbjct: 208 GIRPDVITYNSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEA 267

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + ++ +  V  +I T+NS + G       D   K+ + ++  G+         L+  
Sbjct: 268 KKQYDEMIQRSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNG 327

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   +V +  ++L  +  DG+  +   +N L   +C+   F    ++L  MV+    PD
Sbjct: 328 YCKSKRVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPD 387

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +++GLC+  K  +A     DL++   V   + Y  +I G+CK   + DA  ++ 
Sbjct: 388 IYTFNMLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFC 447

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +  KG+ P+  TY +M+ G  R     EA  L+++M
Sbjct: 448 SLALKGVSPDVITYTTMMIGLRRKRLWLEAHELYRKM 484



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 106/234 (45%), Gaps = 20/234 (8%)

Query: 195 LYHDLIESGYLIQAF----CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           L+  L+E G  + A     CN G  S G +  R+ L  GL   +  FN  ++ FC+    
Sbjct: 11  LHRHLLEKGNPVTALSLNVCNFGAFSGGSDY-RERLRSGL--HSIKFNDALTLFCD---- 63

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                    M      P    +  ++  + K +K      +F  ++  G   D   ++T+
Sbjct: 64  ---------MAESRPLPSIVDFSRLLVAIAKLKKYEAVISLFRHIEILGISHDLYSFSTL 114

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I   C+   L  A     +M+  G  P+  T+ S+++G+C ++ ++EA  L  +++  GY
Sbjct: 115 IDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHVNRIQEAMSLVDQIVGLGY 174

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               V YNT+I  LC + + D A  +   M + GI  DVITYN+LI      GK
Sbjct: 175 EPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNSLITRLFHSGK 228



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 13/212 (6%)

Query: 104 PDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+ N L + L         K  ++F+ S GF PN  +    +   C+S  +++A   
Sbjct: 281 PNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDDAMKI 340

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCN 211
              +   GV G   T+N+   G  +  + +   K+   ++  G L         +   C 
Sbjct: 341 LCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCE 400

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+ +    L  + +   V     +N +I   C+         L  ++  +  +PD  T
Sbjct: 401 HGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVIT 460

Query: 272 YEEVINGLCKSRKRLEAYRVFNDL-KERGYVP 302
           Y  ++ GL + R  LEA+ ++  + K+ G +P
Sbjct: 461 YTTMMIGLRRKRLWLEAHELYRKMKKDDGLMP 492


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 174/345 (50%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +  H    PD+V+ N+L  SL +    K A D  D+    G +P+  S ++ +
Sbjct: 312 AVRVFKEMRRH-SILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIML 370

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK------LY 196
                 G + +    F  +   G+   I T++    A   C  +D+  +++       + 
Sbjct: 371 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVK 430

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    +I A C  GK+ +  E   Q+++ G+ P+  A++ LI  FC   +  +  EL
Sbjct: 431 PDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 490

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  PD V+Y+ ++ G C 
Sbjct: 491 ILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCL 550

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN   Y ++++GYC+I  ++E   L +EML KG   +T+ 
Sbjct: 551 VGKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 610

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN +I GL + GRT  A   F EM + GI  +  TYN +++G+ K
Sbjct: 611 YNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFK 655



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 133/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 125 CTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 184

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  +++ L+   C++   G+  +LL  M       +PD   Y  VI+   K     +A  
Sbjct: 185 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACD 244

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y++V+H LCK   +G A     +M++KG+LP+ +TYN++I+GY 
Sbjct: 245 LFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 304

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM         VT N L+  LC +G+  EA  +F+ MA KG   DV 
Sbjct: 305 STGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 364

Query: 411 TYNTLIQGYCKEGKIVN 427
           +Y  ++ GY  +G +V+
Sbjct: 365 SYKIMLNGYATKGCLVD 381



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 164/374 (43%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PDLV+ + +  +L +ARA   A  FL                       STG     
Sbjct: 253 GIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 312

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG----VFGSIKTWNS 178
                        P+  +L + +  LC+ G I+EA   F  +   G    VF      N 
Sbjct: 313 VRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNG 372

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I         LI+A+ N G + +   +  ++ + G+ P
Sbjct: 373 YATKGCL-VDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKP 431

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +  +I+  C         E  + M+ +  APD + Y  +I G C     L+A  + 
Sbjct: 432 DVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI 491

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            ++   G   D V ++++I+ LCK+G + DA+ ++   ++ G  P+   Y+ ++ GYC +
Sbjct: 492 LEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLV 551

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM QKGI    I Y
Sbjct: 552 GKMEKALRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 611

Query: 413 NTLIQGYCKEGKIV 426
           N +I G    G+ V
Sbjct: 612 NIIIDGLFVAGRTV 625



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 163/378 (43%), Gaps = 64/378 (16%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   D++  N L     EA+    A+D L       G  P+  S  +
Sbjct: 133 LALAFFGQLL-RTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 191

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            ++ LC+ G   +A      + E G   S                         D++   
Sbjct: 192 LLKSLCDQGKSGQADDLLRMMAEGGAVCS------------------------PDVVAYT 227

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I  F  +G V++  +L +++++ G+ P+   ++ ++   C+ +  G+    L  MV +
Sbjct: 228 TVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNK 287

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PDN+TY  +I G   + +  EA RVF +++    +PD V    ++  LCK G + +A
Sbjct: 288 GVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEA 347

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGY----CRIDN------------------------- 354
           R ++  M  KG  P+ ++Y  M++GY    C +D                          
Sbjct: 348 RDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKA 407

Query: 355 ------LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
                 L++A  +  EM D G     VTY T+IA LC  G+ D+A   F +M  +G+  D
Sbjct: 408 YANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPD 467

Query: 409 VITYNTLIQGYCKEGKIV 426
              Y+ LIQG+C  G ++
Sbjct: 468 KYAYHCLIQGFCTHGSLL 485



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/341 (22%), Positives = 149/341 (43%), Gaps = 14/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-----FSPNPNSLELYIQCLCESGLIE 155
           G  PD+ S ++L  SL +      A D L          SP+  +    I C  + G + 
Sbjct: 181 GCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVN 240

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------I 206
           +A   F ++ + G+   + T++S +    K             ++  G L         I
Sbjct: 241 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLI 300

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             + + G+  E   + +++    ++P+    N L+   C+        ++  TM  + + 
Sbjct: 301 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQN 360

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD F+Y+ ++NG       ++   +F+ +   G  PD   ++ +I      G L  A  +
Sbjct: 361 PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMII 420

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM   G+ P+  TY ++I   CRI  +++A     +M+D+G       Y+ LI G C 
Sbjct: 421 FNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 480

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           HG   +A  L  E+   G+  D++ ++++I   CK G+I++
Sbjct: 481 HGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMD 521



 Score = 43.5 bits (101), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  +TY  ++    R    E A     ++L  G     +  N L+ G C   RTDEA 
Sbjct: 111 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 170

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +Y+ L++  C +GK
Sbjct: 171 DILLHRTPELGCVPDVFSYSILLKSLCDQGK 201


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 175/344 (50%), Gaps = 22/344 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG--------FSPNPNSLELYIQCLCESG 152
           G+ PD+ + ++L + L +A   + A +FL               + NSL   +  LC++ 
Sbjct: 404 GYCPDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSL---LNSLCKAK 460

Query: 153 LIEEAFCAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-----I 206
            + +AF  FS +  E      + +++  + G  KID      KLY  +I+   +      
Sbjct: 461 KVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTY 520

Query: 207 QAFCN----DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
            AF N     G++++   +  +++  G  P+   ++ LI  F   +   +  EL  TM++
Sbjct: 521 NAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMIS 580

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R   P+  TY  +++GLCK  K  EA+ +F  + ERG  PD V YTT+++G C +G +  
Sbjct: 581 RGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQ 640

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM+ KG  P+   YN ++ G+ R     EAK+L + M+ +     TV++N +I 
Sbjct: 641 AVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMID 700

Query: 383 GLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
           GL    R D+A  +FE M Q  G   D++TYN+LI G C E ++
Sbjct: 701 GLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRL 744



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/316 (30%), Positives = 164/316 (51%), Gaps = 13/316 (4%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AFK+ ++    +    N  +   ++  LC+SG IE+AF A   ++E  +  S   ++  +
Sbjct: 288 AFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQE-SLSSSQPVYDMLI 346

Query: 181 LGCIKIDRTDLVWKLYHDLI------ESG---YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
              I+  R D   +   ++        SG    +IQ  C  G+V     LL  +++ G  
Sbjct: 347 RLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYC 406

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVAR--NRAPDNFTYEEVINGLCKSRKRLEAY 289
           P+    + LI+  C+        E L  M  +  +R+   F+Y  ++N LCK++K  +A+
Sbjct: 407 PDMATHSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAF 466

Query: 290 RVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +F+ +  ER +VPD V Y+ +I G CK+  LG A K++ +MI    +PN  TYN+ ++G
Sbjct: 467 AIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNG 526

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
             R   + +A+ +++EM+  G     +TY+TLI G  L  + D+A+ LFE M  +G   +
Sbjct: 527 LMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPN 586

Query: 409 VITYNTLIQGYCKEGK 424
            +TYN L+ G CKE K
Sbjct: 587 AVTYNCLLHGLCKESK 602



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 144/301 (47%), Gaps = 12/301 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    IQ LC++G ++ A      + + G    + T +  +    K D+     + 
Sbjct: 372 PSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEF 431

Query: 196 YHDLIES-----------GYLIQAFCNDGKVSEGYELLR-QVLEDGLVPENTAFNKLISR 243
              +                L+ + C   KV + + +    V E   VP+  +++ LI  
Sbjct: 432 LQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDG 491

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           FC+    GR  +L   M+  N  P+  TY   +NGL +  +  +A  V+ ++   G  PD
Sbjct: 492 FCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPD 551

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y+T+IHG         A +++  MI +G  PN  TYN ++HG C+    +EA  L +
Sbjct: 552 VITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR 611

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M+++G     VTY TL+ G C  G+ ++A  +F+EM  KG   DV+ YN L++G+ + G
Sbjct: 612 KMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAG 671

Query: 424 K 424
           K
Sbjct: 672 K 672



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 15/337 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA--F 158
           P   +C+ +   L +A     A+  L++    G+ P+  +  + I  LC++  I+EA  F
Sbjct: 372 PSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEF 431

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQA 208
                 K      S  ++NS L    K  +    + ++           D++    LI  
Sbjct: 432 LQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDG 491

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   ++    +L +Q+++   VP  T +N  ++    K        +   MVA   +PD
Sbjct: 492 FCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPD 551

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G   +RK  +A+ +F  +  RG  P+ V Y  ++HGLCK     +A +++ 
Sbjct: 552 VITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFR 611

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G  P+  TY ++++G+C +  +E+A  +  EM+ KG+    V YN L+ G    G
Sbjct: 612 KMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAG 671

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  EA  LF+ M  +    D +++N +I G  K  ++
Sbjct: 672 KPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRL 708



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 134/312 (42%), Gaps = 49/312 (15%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-IESGY---------L 205
           EA   F  + + G       ++  +L   K++  D  +KL+ ++ +ES            
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNVAWTAF 311

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +   C  GK+ + +E  R  +++ L      ++ LI    E     +  E    +  RN 
Sbjct: 312 LSGLCKSGKIEQAFEACR-TMQESLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNI 370

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P + T   VI  LCK+ +   A  +   + +RGY PD   ++ +I+ LCK   + +A++
Sbjct: 371 QPSSGTCHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQE 430

Query: 326 MWFEM--------------------------IH------------KGLLPNEYTYNSMIH 347
               M                          +H            +  +P+  +Y+ +I 
Sbjct: 431 FLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILID 490

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G+C+ID L  A++L+K+M+D        TYN  + GL   GR  +A  ++EEM   G   
Sbjct: 491 GFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSP 550

Query: 408 DVITYNTLIQGY 419
           DVITY+TLI G+
Sbjct: 551 DVITYSTLIHGF 562



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/300 (26%), Positives = 134/300 (44%), Gaps = 15/300 (5%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFS 135
           L +   V  +   F  + S   F PD+VS ++L D   +     RA K+    +D     
Sbjct: 456 LCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMID-LNCV 514

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +   ++  L   G I +A   + ++   G    + T+++ + G     + D   +L
Sbjct: 515 PNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHEL 574

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +  +I  G          L+   C + K  E +EL R+++E G  P+   +  L+  FC 
Sbjct: 575 FETMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCN 634

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                +  E+   MV++   PD   Y  ++ G  ++ K  EA ++F  +  R   PDTV 
Sbjct: 635 VGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVS 694

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           +  +I GL K   L DA +++  M    G  P+  TYNS+I G C    L EA ++ KE+
Sbjct: 695 HNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEI 754



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 86/191 (45%), Gaps = 3/191 (1%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N L+ +    ++  +  ++   MVA+   P+ FTY  ++   C  R   EA R F ++ 
Sbjct: 132 YNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRFFGEMV 191

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           ++G+ P + +Y  V   L   G  G+  +++   + K +        +++  +   D   
Sbjct: 192 DKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAI 251

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA--QKGIFRDVITYNT 414
           EA +L + M+  G       Y+ ++   C     DEA+ LF EMA   K    +V  +  
Sbjct: 252 EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNNV-AWTA 310

Query: 415 LIQGYCKEGKI 425
            + G CK GKI
Sbjct: 311 FLSGLCKSGKI 321



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 108/231 (46%), Gaps = 4/231 (1%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           HD+     L+        + +  ++  +++  G+VP    +  L+   C ++N       
Sbjct: 127 HDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVRF 186

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN-DLKERGYVPDTVMYTTVIHGLC 315
              MV +   P +  Y++V   L  + K  E  RVF  DL++R  V   +    +++ + 
Sbjct: 187 FGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVI 246

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM-LDKGYGETT 374
           +   + +A K++  M+  G  P+   Y+ M+  +C+++NL+EA +L  EM ++       
Sbjct: 247 QDKAI-EASKLFRAMVKSGCKPDATIYSYMVLAHCKLENLDEAFKLFLEMAVESKAPLNN 305

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           V +   ++GLC  G+ ++A+     M Q+ +      Y+ LI+   + G+I
Sbjct: 306 VAWTAFLSGLCKSGKIEQAFEACRTM-QESLSSSQPVYDMLIRLLIESGRI 355



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 13/227 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+++ + L      AR    A +  +   S G  PN  +    +  LC+    +EA
Sbjct: 547 GCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLCKESKPDEA 606

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F K+ E G      T+ + L G   + + +   +++ +++  G+         L++ 
Sbjct: 607 HELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKG 666

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-AP 267
           F   GK  E  +L + ++     P+  + N +I    + K      E+   M   +  +P
Sbjct: 667 FFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSP 726

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           D  TY  +I GLC  ++  EA +VF ++      PD   +  ++  +
Sbjct: 727 DLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 39/160 (24%), Positives = 67/160 (41%)

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           ARN   D FTY  +++ L + R   +A +VF  +  +G VP+   Y  ++   C      
Sbjct: 122 ARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSD 181

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A + + EM+ KG  P+   Y  +           E  R+    L+K      +    L+
Sbjct: 182 EAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALL 241

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
               +  +  EA  LF  M + G   D   Y+ ++  +CK
Sbjct: 242 VNFVIQDKAIEASKLFRAMVKSGCKPDATIYSYMVLAHCK 281



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 67/140 (47%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA   F  L+ R +  D   Y  ++  L +   L  A +++ +M+ +G++PN +TY  ++
Sbjct: 112 EALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLV 171

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
              C   N +EA R   EM+DKG+  ++  Y  +   L   G+  E   +F    +K + 
Sbjct: 172 QSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVA 231

Query: 407 RDVITYNTLIQGYCKEGKIV 426
            +++    L+  +  + K +
Sbjct: 232 VEMMLKKALLVNFVIQDKAI 251


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 3/233 (1%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H+      LI +FC+  ++   + +L  +L+ G  P    F  LI   C +   G   +L
Sbjct: 43  HNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQL 102

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M      PD  TY  +INGLCK R+  EA  +F+D+  +G  P+   Y+++IHGLC 
Sbjct: 103 FDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCI 162

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR---IDNLEEAKRLHKEMLDKGYGET 373
           +G   +A ++++ MIH+ ++P++ T+N+++   C+   I  +++A  L +EM  +G    
Sbjct: 163 LGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPD 222

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           TVTYNTLI GLC  GR  +A  LF EM   G   D++TY  L    CK  ++ 
Sbjct: 223 TVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLA 275



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 155/335 (46%), Gaps = 15/335 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + L  S+   + +   +     +DS G   N  +L + I   C    +  AF  
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
              + ++G   S  T+ + + G     +     +L+          D++  G LI   C 
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D +++E   L   +L  G+ P N  ++ LI   C   ++     L + M+ R   PD  T
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 272 YEEVINGLCKS---RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  +++ LCK    +   +A  +F ++ ++G +PDTV Y T+IHGLC +G L DA  ++ 
Sbjct: 188 FNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFH 247

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P+  TY  +    C+   L EA  L K +           Y+ ++ G+C  G
Sbjct: 248 EMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAG 307

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF +++ KG+  DV TY  +I G C++G
Sbjct: 308 ELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQG 342



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 75/199 (37%), Positives = 114/199 (57%), Gaps = 4/199 (2%)

Query: 231 VPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           +P NT   N LI+ FC     G    +L  ++     P   T+  +I GLC   K  EA 
Sbjct: 41  IPHNTYTLNILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEAL 100

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           ++F+ +   G+ PD + Y T+I+GLCK   L +A  ++ +M+ KG+ PN +TY+S+IHG 
Sbjct: 101 QLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGL 160

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT---DEAYHLFEEMAQKGIF 406
           C + + +EA RL   M+ +      +T+NTL+  LC  G     D+A  LFEEM+Q+G+ 
Sbjct: 161 CILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLI 220

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D +TYNTLI G C  G++
Sbjct: 221 PDTVTYNTLIHGLCHVGRL 239



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 68/194 (35%), Positives = 103/194 (53%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F+KL++     K++  V  L   M +     + +T   +IN  C   +   A+ V
Sbjct: 8   PSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLGFAFSV 67

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             D+ + GY P T  +TT+I GLC  G +G+A +++ +M  +G  P+  TY ++I+G C+
Sbjct: 68  LGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCK 127

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L EA  L  +ML KG      TY++LI GLC+ G   EA  LF  M  + I  D +T
Sbjct: 128 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 187

Query: 412 YNTLIQGYCKEGKI 425
           +NTL+   CKEG I
Sbjct: 188 FNTLVDALCKEGMI 201



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 123/280 (43%), Gaps = 15/280 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P   +   L   L        A+   D     GF P+  +    I  LC+   + EA
Sbjct: 75  GYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLINGLCKDRQLTEA 134

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQA 208
              FS +   G+  +  T++S + G          I++    +  K+  D +    L+ A
Sbjct: 135 LSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLTFNTLVDA 194

Query: 209 FCNDGKV---SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
            C +G +    +   L  ++ + GL+P+   +N LI   C          L H MV   +
Sbjct: 195 LCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ 254

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  + + LCK+ +  EA  +   ++     PD  +Y+ V+ G+C+ G L  AR 
Sbjct: 255 IPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARD 314

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           ++ ++  KGL P+  TY  MI+G C+   L EA +L  EM
Sbjct: 315 LFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEM 354



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 78/162 (48%), Gaps = 1/162 (0%)

Query: 263 RNRAPDNFT-YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           R R P +   + +++  + + +       ++  +   G   +T     +I+  C +  LG
Sbjct: 3   RMRPPPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLNRLG 62

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A  +  +++  G  P+  T+ ++I G C    + EA +L  +M  +G+    +TY TLI
Sbjct: 63  FAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYGTLI 122

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            GLC   +  EA  LF +M  KGI  +  TY++LI G C  G
Sbjct: 123 NGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILG 164



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 3/86 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  PDLV+  +LFD L +      AM  L   + T   P+ +   + +  +C +G +E 
Sbjct: 252 YGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEA 311

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG 182
           A   FSKL   G+   ++T+   + G
Sbjct: 312 ARDLFSKLSSKGLHPDVRTYTIMING 337


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 142/295 (48%), Gaps = 9/295 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P     +     L + G++EEA   FSK+K   VF   ++ N  L    K+ +TD V + 
Sbjct: 61  PGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRF 120

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           + D+I +G          +I     +G +     L  ++   GL+P+   +N +I  + +
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                        M + +  PD  TY  +IN  CKS K  +    + ++K+ G  P+ V 
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVS 240

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T++   CK   +  A K + +M   G +PNE+TY S++   C+I NL +A RL  EML
Sbjct: 241 YSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEML 300

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           + G     VTY  LI GLC   R  EA  LF +M   G+  ++ +YN LI G+ K
Sbjct: 301 EVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVK 355



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 158/332 (47%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P   SCN L   F  L +    K     +   G  P   +  + I C+ + G IE A   
Sbjct: 96  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGL 155

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F ++K  G+     T+NS + G  K+ R D     +          D+I    LI  FC 
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCK 215

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+ +G E  R++ + GL P   +++ L+  FC++    +  +    M      P+ FT
Sbjct: 216 SGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFT 275

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++  CK     +A+R+ N++ E G   + V YT +I GLC    + +A K++ +M+
Sbjct: 276 YTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMV 335

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G++PN  +YN++IHG+ +  N++ A  L  E+  +G     + Y T I GLC   + +
Sbjct: 336 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIE 395

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A  +  EM + GI  + + Y TL+  Y K G
Sbjct: 396 AAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/338 (25%), Positives = 152/338 (44%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N + D   +       + F +   S    P+  +    I C C+SG + + 
Sbjct: 163 GLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKG 222

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + ++K+ G+  ++ ++++ +    K D      K Y D+   G+         L+ A
Sbjct: 223 LEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDA 282

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G +S+ + L  ++LE G+      +  LI   C+ +      +L   MV     P+
Sbjct: 283 NCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPN 342

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+G  K++    A  + N+LK RG  PD ++Y T I GLC +  +  A+ +  
Sbjct: 343 LASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMN 402

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G+  N   Y +++  Y +  N  E   L +EM +  +  T VT+  LI GLC + 
Sbjct: 403 EMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNK 462

Query: 389 RTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
              +A   F  M+   G+  +   Y  +I G CKE ++
Sbjct: 463 LVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQV 500



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 160/351 (45%), Gaps = 14/351 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           ++ FF+ + S     PD+++ N L +   ++      ++F   +  +G  PN  S    +
Sbjct: 187 TVYFFEEMKS-MSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLV 245

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C+  ++++A   +  ++ +G   +  T+ S +    KI      ++L ++++E G  
Sbjct: 246 DAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVE 305

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI   C+  ++ E  +L  +++  G++P   ++N LI  F + KN  R  EL
Sbjct: 306 WNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALEL 365

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L+ +  R   PD   Y   I GLC   K   A  V N+++E G   +T++YTT++    K
Sbjct: 366 LNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFK 425

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKGYGETTV 375
            G   +   +  EM          T+  +I G C+   + +A      M  D G      
Sbjct: 426 SGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQPNAA 485

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            Y  +I GLC   +   A  LFE+MAQ+G+  D   Y +L+ G  K+G ++
Sbjct: 486 VYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNML 536



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 101/223 (45%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L     + G + E  +   ++    + P+  + N L+ +F +      V      M+   
Sbjct: 69  LFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAG 128

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P  FTY  +I+ + K      A  +F ++K RG +PDTV Y ++I G  K+G L D  
Sbjct: 129 SKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTV 188

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             + EM      P+  TYNS+I+ +C+   L +    ++EM   G     V+Y+TL+   
Sbjct: 189 YFFEEMKSMSCEPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAF 248

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C      +A   + +M + G   +  TY +L+   CK G + +
Sbjct: 249 CKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSD 291



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 142/315 (45%), Gaps = 13/315 (4%)

Query: 106 LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           LV  N    +L +A  F++A + L+  G   N  +    I  LC++  ++EA   F K+ 
Sbjct: 279 LVDANCKIGNLSDA--FRLANEMLE-VGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMV 335

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVS 216
             GV  ++ ++N+ + G +K    D   +L +         DL+  G  I   C   K+ 
Sbjct: 336 TAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIE 395

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
               ++ ++ E+G+      +  L+  + +  N      LL  M   +      T+  +I
Sbjct: 396 AAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLI 455

Query: 277 NGLCKSRKRLEAYRVFNDLK-ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           +GLCK++   +A   F  +  + G  P+  +YT +I GLCK   +  A  ++ +M  +GL
Sbjct: 456 DGLCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGL 515

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           +P+   Y S++ G  +  N+ EA  L  +M + G     + Y +L+ G     +  +A  
Sbjct: 516 VPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARS 575

Query: 396 LFEEMAQKGIFRDVI 410
             EEM  + I  D +
Sbjct: 576 FLEEMIGEEILPDEV 590



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 74/146 (50%), Gaps = 2/146 (1%)

Query: 282 SRKRLEAYRVFNDL--KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           S+  LE   VF++L       VP   ++  +   L  +G L +A + + +M    + P  
Sbjct: 39  SKAELEECDVFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKT 98

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            + N ++H + ++   +  KR  K+M+  G   T  TYN +I  +   G  + A  LFEE
Sbjct: 99  RSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEE 158

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M  +G+  D +TYN++I GY K G++
Sbjct: 159 MKFRGLIPDTVTYNSMIDGYGKVGRL 184



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/279 (22%), Positives = 114/279 (40%), Gaps = 13/279 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L S N L    V+A+    A++ L+     G  P+      +I  LC    IE A
Sbjct: 338 GVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAA 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               ++++E G+  +   + + +    K         L  ++ E  +         LI  
Sbjct: 398 KVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDG 457

Query: 209 FCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            C +  VS+  +   ++  D GL P    +  +I   C++      + L   M      P
Sbjct: 458 LCKNKLVSKAIDYFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVP 517

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +++G  K    LEA  + + + E G   D + YT+++ G  +   L  AR   
Sbjct: 518 DRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFL 577

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
            EMI + +LP+E     ++  +  +  ++EA  L   ++
Sbjct: 578 EEMIGEEILPDEVLCIGVLKKHYELGCIDEAVGLQSYLM 616


>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
 gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
           [Arabidopsis thaliana]
 gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 606

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 183/365 (50%), Gaps = 23/365 (6%)

Query: 80  LKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLV-EARAFKVAMDF--LDSTGFS 135
           L   NN    + F  +  S +YG+    +SC  L  +L+ E R+  V   +  +      
Sbjct: 161 LAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIRRKIQ 220

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID------RT 189
           PN  +  + I  LC++G + +A      +K  G   ++ ++N+ + G  K+       + 
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 190 DLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           D V K      +  +L     LI  F  D  +    ++ +++L+  + P   ++N LI+ 
Sbjct: 281 DAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNSLING 340

Query: 244 FCEKKNFGRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
            C   N G++SE +     MV+    P+  TY  +ING CK+    EA  +F  +K +G 
Sbjct: 341 LC---NGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGA 397

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           VP T MY  +I   CK+G + D   +  EM  +G++P+  TYN +I G CR  N+E AK+
Sbjct: 398 VPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKK 457

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  ++  KG  +  VT++ L+ G C  G + +A  L +EM++ G+    +TYN +++GYC
Sbjct: 458 LFDQLTSKGLPDL-VTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYC 516

Query: 421 KEGKI 425
           KEG +
Sbjct: 517 KEGNL 521



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 106/416 (25%), Positives = 193/416 (46%), Gaps = 47/416 (11%)

Query: 55  PRWEQTLLSD-----------IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFS 103
           PR++  +++D           +   + N    FR+ +  + +  L +R++ WL  +   S
Sbjct: 39  PRYDVAVIADLIEKQHWSKLGVHVTDINPNELFRQLISSELDPDLCLRYYSWLVKNSDIS 98

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY--------IQCLCESGLIE 155
             L     L  SL  A+ +     FLD  GF  N +  +++           +C + +I 
Sbjct: 99  VSLELTFKLLHSLANAKRYSKIRSFLD--GFVRNGSDHQVHSIFHAISMCDNVCVNSIIA 156

Query: 156 EAFC-----------AFSKLKEMGVFG---SIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           +               F   K  G +G   S  +    ++  +K +R+  V  +Y ++I 
Sbjct: 157 DMLVLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKENRSADVEYVYKEMIR 216

Query: 202 S---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                       +I A C  GK+++  +++  +   G  P   ++N LI  +C+    G+
Sbjct: 217 RKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVSYNTLIDGYCKLGGNGK 276

Query: 253 V---SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
           +     +L  MV  + +P+  T+  +I+G  K      + +VF ++ ++   P+ + Y +
Sbjct: 277 MYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQDVKPNVISYNS 336

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+GLC  G + +A  M  +M+  G+ PN  TYN++I+G+C+ D L+EA  +   +  +G
Sbjct: 337 LINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQG 396

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              TT  YN LI   C  G+ D+ + L EEM ++GI  DV TYN LI G C+ G I
Sbjct: 397 AVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNI 452



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 139/326 (42%), Gaps = 33/326 (10%)

Query: 103 SPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           SP+L + N+L D   +      + KV  + LD     PN  S    I  LC  G I EA 
Sbjct: 293 SPNLTTFNILIDGFWKDDNLPGSMKVFKEMLDQD-VKPNVISYNSLINGLCNGGKISEAI 351

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               K+   GV  ++ T+N+                          LI  FC +  + E 
Sbjct: 352 SMRDKMVSAGVQPNLITYNA--------------------------LINGFCKNDMLKEA 385

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++   V   G VP    +N LI  +C+         L   M      PD  TY  +I G
Sbjct: 386 LDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAG 445

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LC++     A ++F+ L  +G +PD V +  ++ G C+ G    A  +  EM   GL P 
Sbjct: 446 LCRNGNIEAAKKLFDQLTSKG-LPDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPR 504

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEM-LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
             TYN ++ GYC+  NL+ A  +  +M  ++       +YN L+ G    G+ ++A  L 
Sbjct: 505 HLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLL 564

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
            EM +KG+  + ITY  + +    +G
Sbjct: 565 NEMLEKGLVPNRITYEIVKEEMVDQG 590



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 106/245 (43%), Gaps = 12/245 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L++ N L +   +    K A+D   S    G  P      + I   C+ G I++ 
Sbjct: 361 GVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDG 420

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAF 209
           F    +++  G+   + T+N  + G  +    +   KL+  L   G         L++ +
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLPDLVTFHILMEGY 480

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G+  +   LL+++ + GL P +  +N ++  +C++ N    + +   M    R   N
Sbjct: 481 CRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMN 540

Query: 270 F-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  ++ G  +  K  +A  + N++ E+G VP+ + Y  V   +   G++ D     F
Sbjct: 541 VASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDQGFVPDIEGHLF 600

Query: 329 EMIHK 333
            +  K
Sbjct: 601 NVSTK 605


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 165/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++   L   L    +A      +D +   G  PN  +  + +  LC+ G I+ A
Sbjct: 109 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLA 168

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   +K++   +   +  +N+ +    K    D    L+ ++   G          LI  
Sbjct: 169 FNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 228

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G+ S+  +LL  ++E  + P    FN LI  F ++  F    +L   M+ R+  PD
Sbjct: 229 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPD 288

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C   +  +A ++F  +  +   PD   Y T+I G CK   + D  +++ 
Sbjct: 289 IFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFR 348

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM H+GL+ +  TY ++I G     + + A+++ K+M+  G     +TY+ L+ GLC +G
Sbjct: 349 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 408

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +F+ M +  I  D+  Y T+I+G CK GK+
Sbjct: 409 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 445



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 170/335 (50%), Gaps = 14/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P+LV+  V+ + L +     +A + L+    +     + ++   I  LC+   +++A
Sbjct: 144 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 203

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 204 LNLFKEMETKGIRPNVVTY-SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 262

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK  E  +L   +++  + P+   +N LI+ FC      +  ++   MV+++  P
Sbjct: 263 AFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFP 322

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I G CKS++  +   +F ++  RG V DTV YTT+I GL   G   +A+K++
Sbjct: 323 DLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 382

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  G+ P+  TY+ ++ G C    LE+A  +   M           Y T+I G+C  
Sbjct: 383 KQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 442

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G+ D+ + LF  ++ KG+  +V+TYNT+I G C +
Sbjct: 443 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 477



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 158/338 (46%), Gaps = 14/338 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF-----LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           P +   N L  ++ + + F + +       +   G+ P+  +L   +   C    I +A 
Sbjct: 40  PSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAV 99

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD----LVWKLYH-----DLIESGYLIQAF 209
               ++ EMG      T+ + + G    ++      LV ++       +L+  G ++   
Sbjct: 100 ALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGL 159

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G +   + LL ++    +  +   FN +I   C+ ++      L   M  +   P+ 
Sbjct: 160 CKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNV 219

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+ LC   +  +A ++ +D+ E+   P+ V +  +I    K G   +A K+  +
Sbjct: 220 VTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDD 279

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           MI + + P+ +TYNS+I+G+C  D L++AK++ + M+ K       TYNTLI G C   R
Sbjct: 280 MIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKR 339

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            ++   LF EM+ +G+  D +TY TLIQG   +G   N
Sbjct: 340 VEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDN 377



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 148/343 (43%), Gaps = 47/343 (13%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESG--------- 152
           D+V  N + DSL + R    A++    +++ G  PN  +    I CLC  G         
Sbjct: 183 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 242

Query: 153 --LIE--------------EAFCAFSKLKEM----------GVFGSIKTWNSALLGCIKI 186
             +IE              +AF    K  E            +   I T+NS + G    
Sbjct: 243 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMH 302

Query: 187 DRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           DR D   +++          DL     LI+ FC   +V +G EL R++   GLV +   +
Sbjct: 303 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 362

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             LI       +     ++   MV+    PD  TY  +++GLC + K  +A  VF+ +++
Sbjct: 363 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 422

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
                D  +YTT+I G+CK G + D   ++  +  KG+ PN  TYN+MI G C    L+E
Sbjct: 423 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 482

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           A  L K+M + G    + TYNTLI      G    +  L  EM
Sbjct: 483 AYALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 525



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/215 (31%), Positives = 110/215 (51%), Gaps = 2/215 (0%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE--LLHTMVARNRAPDN 269
           D K+ +   L   +++   +P    FNKL+S   + K F  V    LL  M+     P  
Sbjct: 20  DLKLDDAIGLFGGMVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSI 79

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            T   ++NG C  ++  +A  + + + E GY PDT+ +TT+IHGL       +A  +   
Sbjct: 80  VTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDR 139

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ +G  PN  TY  +++G C+  +++ A  L  +M         V +NT+I  LC +  
Sbjct: 140 MVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEADVVIFNTIIDSLCKYRH 199

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            D+A +LF+EM  KGI  +V+TY++LI   C  G+
Sbjct: 200 VDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 234


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 160/349 (45%), Gaps = 15/349 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F     SH    P   S N L   LV A+   +A     S      SP+  +    I  L
Sbjct: 142 FLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGL 201

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDL--VWKLYHDLIESG-- 203
           C  G + +A      +K  G+  S+ T+NS + G C K    ++  V  L  +++E+G  
Sbjct: 202 CRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGIS 261

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C +   +    +  ++ + G+      +N LIS  C +       +L
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M     +P+  T+  V+ G CK     +A    + + ER   PD V+YT +I G  +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRR 381

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G + DA  +   M  KG+ PN  TYN +I G+ R  +   A  L  EM +KG     VT
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           YN LI  LC  G   +A  L +EM++ G+  + +TYNT+IQG+C +G I
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P  ++ N L++     K      +   + + R  +PD +T+  VI+GLC+  +  +A  V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGD---ARKMWFEMIHKGLLPNEYTYNSMIHG 348
             D+K  G  P    Y ++I G CK G  G+      +  EM+  G+ P   T+  +I+G
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC+  N   A R+ +EM  +G   + VTYN+LI+GLC  G+ +E   L EEM   G+  +
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 409 VITYNTLIQGYCKEGKIVN 427
            IT+  +++G+CK+G + +
Sbjct: 334 EITFGCVLKGFCKKGMMAD 352



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 145/332 (43%), Gaps = 32/332 (9%)

Query: 100 YGFSPDLVSCNVLFDSLVE----ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGL 153
           +G +P + + N L D   +       + V M    +   G SP   +  + I   C++  
Sbjct: 220 WGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSN 279

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
              A   F ++K+ G+  S+ T+NS                          LI   C++G
Sbjct: 280 TAAAVRVFEEMKQQGIAASVVTYNS--------------------------LISGLCSEG 313

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           KV EG +L+ ++ + GL P    F  ++  FC+K      ++ +  M  RN  PD   Y 
Sbjct: 314 KVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYT 373

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+G  +  K  +A  V   + ++G  P+   Y  +I G  + G    A  +  EM  K
Sbjct: 374 ILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEK 433

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G+  +  TYN +I   C    + +A +L  EM + G     +TYNT+I G C  G    A
Sbjct: 434 GIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSA 493

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y +   M +     +V+TYN  I+ +C+ GK+
Sbjct: 494 YEIRTRMEKCRKRANVVTYNVFIKYFCQIGKM 525



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 59/227 (25%), Positives = 93/227 (40%), Gaps = 35/227 (15%)

Query: 104 PDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           PD+V   +L D       + +A A K AM      G SPN  +    I     SG    A
Sbjct: 367 PDVVIYTILIDGYRRLGKMEDAMAVKEAMA---KKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++KE G+   + T+N                           LI A C  G+V +
Sbjct: 424 SGLLDEMKEKGIEADVVTYN--------------------------VLIGALCCKGEVRK 457

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL ++ E GL P +  +N +I  FC+K N     E+   M    +  +  TY   I 
Sbjct: 458 AVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIK 517

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             C+  K  EA  + N++ ++  VP+ + Y T+  G+ + G+  D R
Sbjct: 518 YFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIR 564


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 139/295 (47%), Gaps = 9/295 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P     +     L E  + EEA   FSK+K   VF   ++ N  L    ++ +TD + + 
Sbjct: 61  PGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKTDGMKRF 120

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           + D+I +G          +I   C +G +     L  ++   GL+P+   +N +I  + +
Sbjct: 121 FKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGK 180

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                        M + +  PD  TY  +IN  CK  K  +    F ++K+ G  P+ V 
Sbjct: 181 VGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVS 240

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T++   CK   +  A K + +M   GL+PNE+TY S++  YC+I NL +A RL  EM 
Sbjct: 241 YSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMS 300

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             G     VTY  LI GLC   R  EA  LF +M   G+  ++ +Y  LI G+ K
Sbjct: 301 QVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVK 355



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 172/369 (46%), Gaps = 15/369 (4%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL---FDSLVEARA 121
           +P F   D LF    L +++    +++ F  +     F P   SCN L   F  L +   
Sbjct: 60  VPGFGVFDALF--SVLIEEDMFEEALQCFSKMKRCRVF-PKTRSCNGLLHKFARLGKTDG 116

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
            K     +   G  P   +  + I C+C+ G IE A   F ++K  G+     T+NS + 
Sbjct: 117 MKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMID 176

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K+ R D     +          D+I    LI  FC  GK+ +G E  R++ + GL P
Sbjct: 177 GYGKVGRLDDTVYFFEEMKSMSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKP 236

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
              +++ L+  FC++    +  +    M      P+  TY  +++  CK     +A+R+ 
Sbjct: 237 NVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLA 296

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++ + G   + V YT +I GLC +  + +A +++ +M+  G++PN  +Y ++IHG+ + 
Sbjct: 297 DEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKA 356

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N++ A  L  EM  +G     + Y T I  LC   + + A  +  EM +KGI  +   Y
Sbjct: 357 KNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIY 416

Query: 413 NTLIQGYCK 421
            TL+  Y K
Sbjct: 417 TTLMDAYFK 425



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 157/351 (44%), Gaps = 14/351 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           ++ FF+ + S     PD+++ N L +   +       ++F   +  +G  PN  S    +
Sbjct: 187 TVYFFEEMKS-MSCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLV 245

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C+  ++++A   +  ++ +G+  +  T+ S +    KI      ++L  ++ + G  
Sbjct: 246 DAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVE 305

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI   C+  ++ E  EL  +++  G++P   ++  LI  F + KN  R  EL
Sbjct: 306 WNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALEL 365

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M  R   PD   Y   I  LC   K   A  V N+++E+G   +T +YTT++    K
Sbjct: 366 LDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAYFK 425

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKGYGETTV 375
                +   +  EM+   +     T+  +I G C+   + +A      +  D G      
Sbjct: 426 SENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANAA 485

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            Y  +I GLC   + + A  LFE+MAQKG+  D   Y +LI G  K+G +V
Sbjct: 486 IYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGKLKQGNVV 536


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L +   + +  + A + L        + N       +  LC  G +  A
Sbjct: 402 GIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRA 461

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++   G+  +I  + + + G +K  R +   K+   + + G          +I  
Sbjct: 462 NELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIG 521

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ EG   L +++  GL P    +   I  +C              M+    AP+
Sbjct: 522 FCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPN 581

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +    ++I+G CK     +A+  F  + ++G +PD   ++ +IHGL K G L +A  ++ 
Sbjct: 582 DVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFS 641

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E++ KGL+P+ +TY S+I   C+  +L+ A  LH +M  KG     VTYN LI GLC  G
Sbjct: 642 ELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLG 701

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A  LF+ + +KG+ R+ +TY+T+I GYCK   +
Sbjct: 702 EIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANL 738



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 155/328 (47%), Gaps = 22/328 (6%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           DL   N LF  ++             S G  PN       ++ L + G  EEA      +
Sbjct: 457 DLTRANELFQEMI-------------SWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVM 503

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTD---------LVWKLYHDLIESGYLIQAFCNDGKV 215
           K+ G+   +  +N+ ++G  K  + +         +   L  ++   G  I  +C  G++
Sbjct: 504 KDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEM 563

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                   ++L+ G+ P +     LI  +C+  N  +       M+ +   PD  T+  +
Sbjct: 564 QAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVL 623

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+GL K+ K  EA  VF++L ++G VPD   YT++I  LCK G L  A ++  +M  KG+
Sbjct: 624 IHGLSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGI 683

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN  TYN++I+G C++  + +A+ L   + +KG    +VTY+T+IAG C      EA+ 
Sbjct: 684 NPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQ 743

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           LF  M   G+  D   Y  LI G CK G
Sbjct: 744 LFHGMKLVGVPPDSFVYCALIDGCCKAG 771



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 168/347 (48%), Gaps = 14/347 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCL 148
            FQ + S +G  P++V    +   LV+   F+ A+  L      G SP+       I   
Sbjct: 464 LFQEMIS-WGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGF 522

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C++G +EE      ++   G+  ++ T+ + + G  +        + + ++++SG     
Sbjct: 523 CKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPND 582

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI  +C DG  ++ +   R +L+ G++P+    + LI    +         +   
Sbjct: 583 VICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEAMGVFSE 642

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           ++ +   PD FTY  +I+ LCK      A+ + +D+ ++G  P+ V Y  +I+GLCK+G 
Sbjct: 643 LLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGE 702

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  AR+++  +  KGL  N  TY+++I GYC+  NL EA +L   M   G    +  Y  
Sbjct: 703 IAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCA 762

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LI G C  G T++A  LF  M ++GI      +N LI G+ K GK++
Sbjct: 763 LIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGFFKLGKLI 808



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 123/488 (25%), Positives = 201/488 (41%), Gaps = 85/488 (17%)

Query: 19  FQNPNTQLRNL------------SIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIP 66
           F+N N + R L            S  T           K++  + + K  W+  + S   
Sbjct: 8   FKNQNGKSRTLISTLRTHSIKSNSFSTNADTNQSDNTVKEITSLLKQK-NWQFLIESSPL 66

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIR---FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
               N  + F   + +QN V+   R   FF W++S   FS +L + ++L   L  +  F 
Sbjct: 67  PNKLNPDVVF--LVIKQNQVIDPKRLHGFFNWVNSRTVFSQNLSTFSILSLILCNSGLFG 124

Query: 124 VAMDFLDSTGFSPNPNS--LELYIQCLCE----------------------SGLIEEAFC 159
            A + L+    + NP+   L+  I+C  E                       G + EA  
Sbjct: 125 NAANVLERMIDTRNPHVKILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVS 184

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--------GYLIQAFCN 211
            F   K       +   NS     +K +R +L WK+Y  ++ +          LI A+C 
Sbjct: 185 VFLGAKTNEFIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGAIVPDVYTYTNLINAYCR 244

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GKV EG  +L  + E G +P    ++ +I+  C   +     EL  +M  +   PDN+ 
Sbjct: 245 VGKVEEGKHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYI 304

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G C+ ++  E   + +++   G  PD V YT +I+G  K   +G A ++  EM 
Sbjct: 305 YATLIDGFCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMF 364

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA--------- 382
            + +  N +TY ++IHG C+I +LE+A+ L  EM   G      TYN LI          
Sbjct: 365 ARKIKLNTFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNME 424

Query: 383 --------------------------GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
                                     GLC  G    A  LF+EM   G+  +++ Y T++
Sbjct: 425 KAYELLIEIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIV 484

Query: 417 QGYCKEGK 424
           +G  KEG+
Sbjct: 485 KGLVKEGR 492



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 155/372 (41%), Gaps = 50/372 (13%)

Query: 102 FSPDLVSCNVLFDSLVEARA----FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           F   L  CN L   L++       +KV    L +    P+  +    I   C  G +EE 
Sbjct: 194 FIVGLACCNSLSKDLLKGNRVELFWKVYKGMLGA--IVPDVYTYTNLINAYCRVGKVEEG 251

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                 ++E G   ++ T++  + G  +    D   +L   +   G L         I  
Sbjct: 252 KHVLFDMEEKGCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDG 311

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   + +EG  +L ++   GL P++ A+  LI+ F ++ + G   ++   M AR    +
Sbjct: 312 FCRQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLN 371

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT-------------------- 308
            FTY  +I+GLCK     +A  +F+++   G  PD   Y                     
Sbjct: 372 TFTYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLI 431

Query: 309 ---------------TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
                           +++GLC  G L  A +++ EMI  GL PN   Y +++ G  +  
Sbjct: 432 EIKKENLTANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEG 491

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             EEA ++   M D+G       YNT+I G C  G+ +E      EM  KG+  +V TY 
Sbjct: 492 RFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYG 551

Query: 414 TLIQGYCKEGKI 425
             I GYC+ G++
Sbjct: 552 AFIHGYCRAGEM 563



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 163/377 (43%), Gaps = 50/377 (13%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           F + L S  G +P+ V C  L D   +     +AF      LD  G  P+  +  + I  
Sbjct: 570 FIEMLDS--GIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQ-GVLPDVQTHSVLIHG 626

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           L ++G ++EA   FS+L + G+   + T+ S +    K       ++L+ D+ + G    
Sbjct: 627 LSKNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPN 686

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C  G++++  EL   + E GL   +  ++ +I+ +C+  N     +L H
Sbjct: 687 IVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFH 746

Query: 259 TMVARNRAPDNFTYEEVINGLCKSR----------------------------------K 284
            M      PD+F Y  +I+G CK+                                   K
Sbjct: 747 GMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGK 806

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            +EAY++  D+ +    P+ V YT +I   C +G + +A +++ EM  + ++PN  TY S
Sbjct: 807 LIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTS 866

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++HGY RI    E   L  EM+ +G     + ++ ++      G   +A  L ++M  +G
Sbjct: 867 LLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEG 926

Query: 405 IFRDVITYNTLIQGYCK 421
           +      Y  LI   CK
Sbjct: 927 VNVCKNLYTILIDALCK 943



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 144/335 (42%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ +V+   L  A     A++    + + G  P+       I   C      E 
Sbjct: 262 GCIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEG 321

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++  MG+      + + + G +K       +++  ++              LI  
Sbjct: 322 KSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHG 381

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +  +L  ++   G+ P+   +N LI  + + +N  +  ELL  +   N   +
Sbjct: 382 LCKIGDLEKAEDLFSEMTMMGIKPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENLTAN 441

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +    ++NGLC       A  +F ++   G  P+ V+YTT++ GL K G   +A K+  
Sbjct: 442 AYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILG 501

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  +GL P+ + YN++I G+C+   +EE K    EM+ KG      TY   I G C  G
Sbjct: 502 VMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAG 561

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               A   F EM   GI  + +    LI GYCK+G
Sbjct: 562 EMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDG 596



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 146/315 (46%), Gaps = 15/315 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+ N L + L +      A +  D     G + N  +    I   C+S  + EA
Sbjct: 682 GINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEA 741

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAF 209
           F  F  +K +GV      + + + GC K   T+    L+  ++E G         LI  F
Sbjct: 742 FQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGF 801

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              GK+ E Y+L+  ++++ + P +  +  LI   C   N     +L   M  RN  P+ 
Sbjct: 802 FKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNV 861

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++G  +  +R E + +F+++  RG  PD + ++ ++    K G    A K+  +
Sbjct: 862 LTYTSLLHGYNRIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDD 921

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH-- 387
           M+ +G+   +  Y  +I   C+ +NL E  ++  E+  +G   +  T  TL+   C H  
Sbjct: 922 MLSEGVNVCKNLYTILIDALCKHNNLSEVLKVLDEVEKQGSKLSLATCGTLVC--CFHRA 979

Query: 388 GRTDEAYHLFEEMAQ 402
           GRTDEA  + E M +
Sbjct: 980 GRTDEALRVLESMVR 994



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 154/336 (45%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ +   L  +L +    K A +  D     G +PN  +    I  LC+ G I +A
Sbjct: 647 GLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKA 706

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  + E G+  +  T+++ + G  K       ++L+H +   G          LI  
Sbjct: 707 RELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDG 766

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G   +   L   ++E+G +    AFN LI  F +        +L+  MV  +  P+
Sbjct: 767 CCKAGNTEKALSLFLGMVEEG-IASTPAFNALIDGFFKLGKLIEAYQLVEDMVDNHITPN 825

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I   C      EA ++F ++++R  +P+ + YT+++HG  ++G   +   ++ 
Sbjct: 826 HVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYNRIGRRSEMFSLFD 885

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G+ P++  ++ M+  + +  N  +A +L  +ML +G       Y  LI  LC H 
Sbjct: 886 EMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHN 945

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              E   + +E+ ++G    + T  TL+  + + G+
Sbjct: 946 NLSEVLKVLDEVEKQGSKLSLATCGTLVCCFHRAGR 981


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/217 (38%), Positives = 118/217 (54%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC+   ++  + +   +L+ G  P+    N LI   C      R       +VA+ 
Sbjct: 134 LINCFCHLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQG 193

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  +Y  +INGLCK+ +     R+   L+     PD VMYTT+IH LCK   +GDA 
Sbjct: 194 FQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDAC 253

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ EMI KG+ PN +TYN++I+G+C + NL+EA  L  EM  K       T+N LI  L
Sbjct: 254 DLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDAL 313

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              G+ DEA  LFEEM  K +F +++TY +LI G CK
Sbjct: 314 GKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCK 350



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 152/324 (46%), Gaps = 12/324 (3%)

Query: 112 LFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           +  SLV+ + +   +       S G +PN  +L + I C C    I  AF  F+ + + G
Sbjct: 99  ILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSVFANILKRG 158

Query: 169 VFGSIKTWNSALLG---CIKIDRT-----DLVWKLYH-DLIESGYLIQAFCNDGKVSEGY 219
                 T N+ + G   C +I R       +V + +  D +  G LI   C  G+     
Sbjct: 159 YHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAVA 218

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            LLR++    + P+   +  +I   C+ K  G   +L   M+ +  +P+ FTY  +I G 
Sbjct: 219 RLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGF 278

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           C      EA+ + N++K +   PD   +  +I  L K G + +A  ++ EM HK + PN 
Sbjct: 279 CIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNI 338

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TY S+I G C+  +LE A  L K+M ++G      +Y  L+  LC  GR + A   F+ 
Sbjct: 339 VTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQH 398

Query: 400 MAQKGIFRDVITYNTLIQGYCKEG 423
           +  KG   +V TYN +I G CK G
Sbjct: 399 LLVKGYHLNVRTYNVMINGLCKAG 422



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 104/364 (28%), Positives = 171/364 (46%), Gaps = 18/364 (4%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----A 121
           P+F+F++ L     L +  + L  I  F+   S+ G +P+L + N+L +          A
Sbjct: 92  PTFHFDNIL---SSLVKNKHYLTVISLFKQFQSN-GVTPNLCTLNILINCFCHLAHITFA 147

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F V  + L   G+ P+  +L   I+ LC  G I+ A     K+   G      ++ + + 
Sbjct: 148 FSVFANILKR-GYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLIN 206

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K   T  V +L           D++    +I   C + +V +  +L  +++  G+ P
Sbjct: 207 GLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISP 266

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +N LI  FC   N      LL+ M  +N  PD +T+  +I+ L K  K  EA  +F
Sbjct: 267 NVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLF 326

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            ++K +   P+ V YT++I GLCK   L  A  +  +M  +G+ P+ Y+Y  ++   C+ 
Sbjct: 327 EEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKG 386

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             LE AK+  + +L KGY     TYN +I GLC  G   +   L  +M  KG   D IT+
Sbjct: 387 GRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITF 446

Query: 413 NTLI 416
            T+I
Sbjct: 447 KTII 450



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 137/318 (43%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++ N L   L      K A+ F D   + GF  +  S    I  LC++G  +  
Sbjct: 158 GYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCKAGETKAV 217

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                KL+   V   +  + + +    K  R      LY ++I  G          LI  
Sbjct: 218 ARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYG 277

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + E + LL ++    + P+   FN LI    ++        L   M  +N  P+
Sbjct: 278 FCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPN 337

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+     A  +   +KE+G  PD   YT ++  LCK G L +A++ + 
Sbjct: 338 IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQ 397

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ KG   N  TYN MI+G C+     +   L  +M  KG     +T+ T+I  L    
Sbjct: 398 HLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKD 457

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A     EM  +G+ 
Sbjct: 458 ENDKAEKFLREMIARGLL 475



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 95/194 (48%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F+ ++S   + K++  V  L     +    P+  T   +IN  C       A+ V
Sbjct: 91  PPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAHITFAFSV 150

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F ++ +RGY PD +   T+I GLC  G +  A     +++ +G   ++ +Y ++I+G C+
Sbjct: 151 FANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGTLINGLCK 210

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               +   RL +++         V Y T+I  LC + R  +A  L+ EM  KGI  +V T
Sbjct: 211 AGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFT 270

Query: 412 YNTLIQGYCKEGKI 425
           YNTLI G+C  G +
Sbjct: 271 YNTLIYGFCIMGNL 284



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/166 (24%), Positives = 78/166 (46%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P  F ++ +++ L K++  L    +F   +  G  P+      +I+  C +  
Sbjct: 84  MLLMRPPPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFCHLAH 143

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A  ++  ++ +G  P+  T N++I G C    ++ A   H +++ +G+    V+Y T
Sbjct: 144 ITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQVSYGT 203

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC  G T     L  ++    +  DV+ Y T+I   CK  ++
Sbjct: 204 LINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRV 249



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/258 (22%), Positives = 110/258 (42%), Gaps = 13/258 (5%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R  + L  H    PD+V    +   L + +    A D        G SPN  +    I  
Sbjct: 219 RLLRKLEGH-SVKPDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYG 277

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK------LYHD 198
            C  G ++EAF   +++K   +   + T+N    AL    KID    +++      ++ +
Sbjct: 278 FCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPN 337

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++    LI   C +  +     L +++ E G+ P+  ++  L+   C+        +   
Sbjct: 338 IVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQ 397

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            ++ +    +  TY  +INGLCK+    +   + + ++ +G +PD + + T+I  L +  
Sbjct: 398 HLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKD 457

Query: 319 WLGDARKMWFEMIHKGLL 336
               A K   EMI +GLL
Sbjct: 458 ENDKAEKFLREMIARGLL 475


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 111/407 (27%), Positives = 191/407 (46%), Gaps = 21/407 (5%)

Query: 29  LSIETKESQQLYTEIAKQVCKITR----TKPRWEQTLLSDIP-SFNFNDPLFFREFLKQQ 83
           +S   + ++ +Y  + + +CKI +    +K   E   +   P +F +N PL    F  QQ
Sbjct: 375 ISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYN-PLMQGHF--QQ 431

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNS 140
           ++   +      + +  G  P++ S  ++ + L +    K A + L+   S G  PN   
Sbjct: 432 HDKDGAFELLNEMRNS-GILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFM 490

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
               I    + G I  A  A  K+ +  V   +  +NS + G   + R +   + Y  + 
Sbjct: 491 YAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQ 550

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           + G          LI  +C  G + +  +LLRQ+L  GL P    +  L+  + +  ++ 
Sbjct: 551 KRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYE 610

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +VS +L +M+     PDN  Y  VI  L +S     A+ V  ++++ G VPD  +Y+++I
Sbjct: 611 KVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLI 670

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK+  +  A  +  EM  +GL P    YN++I G+CR  ++  A+ +   +L KG  
Sbjct: 671 SGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLV 730

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
              VTY  LI G C +G   +A+ L++EM  +GI  D   YN L  G
Sbjct: 731 PNCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVYNVLATG 777



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + +   ++  +AR F  A    +       + N  +  + I  LC SG +EEA
Sbjct: 238 GILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 297

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F    ++ + G+     T+ + + G  K  R      L  ++  SG          L+  
Sbjct: 298 FGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDG 357

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK +E +++L++++  G+ P    ++ LI   C+    GR S+LL  M+     PD
Sbjct: 358 FMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPD 417

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  ++ G  +   +  A+ + N+++  G +P+   Y  +I+GLC+ G   +A  +  
Sbjct: 418 TFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLE 477

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI +GL PN + Y  +I G+ +  N+  A    ++M           YN+LI GL   G
Sbjct: 478 EMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVG 537

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R +EA   + ++ ++G+  D  TY+ LI GYCK G +
Sbjct: 538 RMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNL 574



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 105/408 (25%), Positives = 168/408 (41%), Gaps = 82/408 (20%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLD----------------------------- 130
           YG SPD  +   L + L +    K A   LD                             
Sbjct: 307 YGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEGKTAE 366

Query: 131 ---------STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
                    S G  PN    +  I+ LC+ G +  A     ++ ++G+     T+N  + 
Sbjct: 367 AFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQ 426

Query: 182 GCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  +    D  ++L +++  SG L         I   C +G+  E   LL +++ +GL P
Sbjct: 427 GHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKP 486

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +  LI    ++ N     E L  M   N  PD F Y  +I GL    +  EA   +
Sbjct: 487 NAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYY 546

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
             +++RG VPD   Y+ +IHG CK G L  A ++  +M++ GL PN  TY  ++ GY + 
Sbjct: 547 AQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLKPNADTYTDLLEGYFKS 606

Query: 353 DNLEEAKRLHKEMLDKG-------YG------------------ETTV----------TY 377
           ++ E+   + + ML  G       YG                   T V           Y
Sbjct: 607 NDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIY 666

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++LI+GLC     ++A  L +EMA++G+   ++ YN LI G+C+ G I
Sbjct: 667 SSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDI 714



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 155/341 (45%), Gaps = 16/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N L     +      A + L+   ++G  PN  S  + I  LC++G  +EA
Sbjct: 413 GLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEA 472

Query: 158 FCAFSKLKEMG-----------VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
                ++   G           + G  K  N +L  C  +++      ++ DL     LI
Sbjct: 473 GNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISL-ACEALEKMTKA-NVHPDLFCYNSLI 530

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +     G++ E  E   QV + GLVP+   ++ LI  +C+  N  +  +LL  M+     
Sbjct: 531 KGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNSGLK 590

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY +++ G  KS    +   +   +   G  PD  +Y  VI  L +   +  A  +
Sbjct: 591 PNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMV 650

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             E+   GL+P+ + Y+S+I G C+I ++E+A  L  EM  +G     V YN LI G C 
Sbjct: 651 LTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCR 710

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            G    A ++F+ +  KG+  + +TY  LI G CK G I +
Sbjct: 711 SGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITD 751



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 13/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDL   N L   L      + A ++   +   G  P+  +    I   C++G +E+A   
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQL 580

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
             ++   G+  +  T+   L G  K +  + V  +   ++ SG          +I+    
Sbjct: 581 LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 640

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +   + +L +V ++GLVP+   ++ LIS  C+  +  +   LL  M      P    
Sbjct: 641 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVC 700

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G C+S     A  VF+ +  +G VP+ V YT +I G CK G + DA  ++ EM+
Sbjct: 701 YNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEML 760

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ P+ + YN +  G     +LE+A  L +EM ++GY   ++ +NTL+ G C  G+  
Sbjct: 761 DRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYANVSL-FNTLVHGFCKRGKLQ 819

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E   L   M  + I  +  T   ++  + K GK+
Sbjct: 820 ETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKL 853



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 63/197 (31%), Positives = 92/197 (46%), Gaps = 8/197 (4%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P     + L+  + +  +    ++++  M     AP         NGL K   R +A  +
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPT----RRCCNGLLKDLLRADAMEL 226

Query: 292 FNDLKE----RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
              LK      G +PD   Y+T I   CK      A+K++ EM  +    NE TYN MI 
Sbjct: 227 LWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMIS 286

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G CR   +EEA    +EM+D G      TY  L+ GLC   R  EA  L +EM+  G+  
Sbjct: 287 GLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKP 346

Query: 408 DVITYNTLIQGYCKEGK 424
           +++ Y TL+ G+ KEGK
Sbjct: 347 NIVVYGTLVDGFMKEGK 363



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/325 (23%), Positives = 138/325 (42%), Gaps = 30/325 (9%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCE 150
           Q L+S  G  P+  +   L +   ++  ++     L S   +G  P+ +   + I+ L  
Sbjct: 583 QMLNS--GLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 640

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
           S  +E AF   +++++ G+   +  ++S + G  KI   +    L  ++ + G       
Sbjct: 641 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVC 700

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI  FC  G +S    +   +L  GLVP    +  LI   C+  +     +L   M+
Sbjct: 701 YNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFDLYKEML 760

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            R  APD F Y  +  G   +    +A  +  ++  RGY  +  ++ T++HG CK G L 
Sbjct: 761 DRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCKRGKLQ 819

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +  K+   M+ + ++PN  T   ++  + +   L EA R+  E+  K   ++        
Sbjct: 820 ETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQKKASQSA------- 872

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIF 406
                   TD    LF +M  KG+ 
Sbjct: 873 --------TDRFSLLFTDMINKGLI 889



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/194 (24%), Positives = 79/194 (40%), Gaps = 12/194 (6%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P   AF +L +  C    F + + LLH M+  +  P           L   ++ ++    
Sbjct: 113 PSADAFARLAASLCAASLFPQANGLLHQMILAHPHPPLV--------LASIQRAIQD--- 161

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             D + R   P T +   ++    K G + +A ++   M   GL P     N ++    R
Sbjct: 162 -TDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLR 220

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D +E   +L   M   G      TY+T I   C     D A  +FEEM ++    + +T
Sbjct: 221 ADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVT 280

Query: 412 YNTLIQGYCKEGKI 425
           YN +I G C+ G +
Sbjct: 281 YNVMISGLCRSGAV 294


>gi|115434588|ref|NP_001042052.1| Os01g0153200 [Oryza sativa Japonica Group]
 gi|113531583|dbj|BAF03966.1| Os01g0153200 [Oryza sativa Japonica Group]
          Length = 1139

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 154/325 (47%), Gaps = 29/325 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N L D L +   F  A      +   G  PN  +  + I  LC+ G+IE+A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
            C F K+++ G+  ++  +NS                          LI  +C  G +  
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNS--------------------------LINGYCKQGSLDR 426

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LL  ++++GL P   +++ LI+  C   +     EL   M  R  A +N+T+  +IN
Sbjct: 427 ARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALIN 486

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK +K  EA R+F+ + +   +P+ V +  +I G C +G +  A +++ +M+  GL P
Sbjct: 487 GFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKP 546

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + YTY S+I G C    + +A     ++ +        +   L+ G    GR  E YHL+
Sbjct: 547 DNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLW 606

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           +EMA +G+  D++++  ++    K+
Sbjct: 607 DEMAVRGVKLDLVSFTIIVYAALKQ 631



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 12/316 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR   V M+   S G   +     + +  LC++  ++EA    + +  +GV     T+ +
Sbjct: 217 ARGLVVRME---SEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 273

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  +++  ++  ++ HD+I  G+         +I        V E + L  ++ + G
Sbjct: 274 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLG 333

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           +VP   A+N LI + C+ + F     L   M  R   P+  TY  +I+ LCK     +A 
Sbjct: 334 MVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDAL 393

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F+ ++++G       Y ++I+G CK G L  AR +   M+ +GL P   +Y+ +I G 
Sbjct: 394 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL 453

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           CR  +L     LH+EM ++G      T+  LI G C   + DEA  LF++M    +  + 
Sbjct: 454 CRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNE 513

Query: 410 ITYNTLIQGYCKEGKI 425
           +T+N +I+GYC  G I
Sbjct: 514 VTFNVMIEGYCLVGNI 529



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 16/317 (5%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR F   +D    +   PN  +  + I+  C  G I +AF  + ++ EMG+     T+ S
Sbjct: 498 ARLFDKMID----SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRS 553

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY----------LIQAFCNDGKVSEGYELLRQVLED 228
            + G           +   DL E+ Y          L+  F  +G+ +E Y L  ++   
Sbjct: 554 LISGLCLTSGVSKANEFVADL-ENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVR 612

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+  +  +F  ++    ++ +  +   L   M  +   PD+  Y  +I+ L K    ++A
Sbjct: 613 GVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQA 672

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              ++ +   GY P+TV +T +I+ LCK G+LG A  +  EM+   +LPN++TYN  +  
Sbjct: 673 LNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDY 732

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +    ++E+AK LH  ML +G+  + V++N LI GLC  G+  EA  L  ++ + G   D
Sbjct: 733 FATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 791

Query: 409 VITYNTLIQGYCKEGKI 425
            I+Y+T+I   CK G I
Sbjct: 792 CISYSTIIHELCKMGDI 808



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESG-----YL----IQAFCNDGKVSEGYELLRQV 225
           T +  L   +KI +  L   L+  +++SG     Y+    I+A+C    +     L+ ++
Sbjct: 165 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 224

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
             +G+      +N L+   C+        E+ + MV      D  TY  ++ G C+  + 
Sbjct: 225 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 284

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A R+ +D+   G+VP     + +I  L K   + +A  +  ++   G++PN + YN++
Sbjct: 285 EMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNAL 344

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I   C+ +  ++A RL KEM  +G     VTY  LI  LC  G  ++A  LF++M  KGI
Sbjct: 345 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 404

Query: 406 FRDVITYNTLIQGYCKEGKI 425
              V  YN+LI GYCK+G +
Sbjct: 405 KVTVYPYNSLINGYCKQGSL 424



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 1/214 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I A   +  + +      Q++ DG  P       LI+  C+    G    L   M+A N
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+ FTY   ++    +   +E  +  +    +G++   V +  +I GLCK G + +A 
Sbjct: 719 VLPNKFTYNCFLDYFA-TEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  ++   G  P+  +Y+++IH  C++ ++ +A  L  EML KG     V YN  I   
Sbjct: 778 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +HG +D+A  ++  M + G+  +  TY  L+ G
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C  G +     L +++L   ++P    +N  +  F  + +  +  +L H+ + + 
Sbjct: 694 LINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL-HSAMLQG 752

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                 ++  +I GLCK+ K  EA  + + + E G+ PD + Y+T+IH LCKMG +  A 
Sbjct: 753 HLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAF 812

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           ++W EM++KGL P+   YN  I  +C +    ++A  ++  M+  G      TY  L++G
Sbjct: 813 ELWNEMLYKGLKPDVVAYNIFIR-WCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871

Query: 384 LCL 386
           + L
Sbjct: 872 ISL 874



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L  G+       ++++    + + F    +L   M+      D + Y   I   C+SR  
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A  +   ++  G     V Y  +++GLCK   + +A ++   M++ G+  +E TY ++
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 346 IHGYCRIDNLEEAKRLHKEML-----------------------------------DKGY 370
           ++G+CR++ LE A R+  +M+                                   D G 
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 YN LI  LC + R D+A  LF+EMA +G+  + +TY  LI   CK G I
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 389



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD +    + D+L +      A++  D     G+SPN  +  + I  LC+SG +  A
Sbjct: 648 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSA 707

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL--------LGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
                ++    V  +  T+N  L        +   K   + ++      ++    LI+  
Sbjct: 708 ELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGL 767

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK+ E  +L+ ++ E G  P+  +++ +I   C+  +  +  EL + M+ +   PD 
Sbjct: 768 CKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDV 827

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             Y   I       +  +A  ++ ++   G  P+   Y  ++ G+  M
Sbjct: 828 VAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLM 875


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +           
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGL K  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  +M  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVD 370



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 152/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S  ++N+ + G I++   D  ++L   ++ SG          LI     + K+
Sbjct: 169 TKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +D+  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +   
Sbjct: 349 RLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           + +G   D+VS N +   L  A+ +    + +D       +PN  +    I  LC +GL 
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E      +++ E G    I+ + + + G  K    ++  ++ + +   G          +
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV 327

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C+  +  E  ELL ++ +     ++  FN L+  FC+     RV ELL  M++   
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  VING CK     EA  +   +   G  P+TV YT V+ GLC  G   DA +
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +MI +G  PN  T+N++I+  C+   +E+A  L K+ML  G     ++Y+T+I GL 
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+T+EA  L   M  KGI  + I Y+++     +EG++
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 113/221 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ A C  G V E   LLR++   G   +  ++N ++   C  K +G V EL+  MV  +
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP+  T+  +I  LC++      + V   + E G  PD  MY T+I G+CK G L  A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M   GL PN   YN+++ G C  +  +EA+ L  EM  K      VT+N L+   
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C +G  D    L E+M   G   DVITY T+I G+CKEG I
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 158/335 (47%), Gaps = 20/335 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+ N L   L     F+   + L      G +P+       I  +C+ G +E A  
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE 307

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------LI 206
             +++   G+  ++  +N+ L G    +R    WK   +L+   +             L+
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAER----WKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC +G V    ELL Q+L  G +P+   +  +I+ FC++        LL +M +    
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +Y  V+ GLC + + ++A  + + + ++G  P+ V + T+I+ LCK G +  A ++
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIEL 483

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+  G  P+  +Y+++I G  +    EEA  L   M++KG    T+ Y+++   L  
Sbjct: 484 LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR ++   +F+ +    I  D + YN +I   CK
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 143/333 (42%), Gaps = 29/333 (8%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G +P     +V+ ++   +  F+ ++  L++    G + +  +  L +  +CE G +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           +EA     KL   G    I ++N+ L G                           C   +
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKG--------------------------LCMAKR 231

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
             +  EL+ +++     P    FN LI   C    F RV E+L  M      PD   Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G+CK      A  + N +   G  P+ V Y TV+ GLC      +A ++  EM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              ++ T+N ++  +C+   ++    L ++ML  G     +TY T+I G C  G  DEA 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L + M+  G   + ++Y  +++G C  G+ V+
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVD 444



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N +   L  A  +K A + L        P    +  + +   C++GL++ 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++   G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ G+  +  EL+ Q+++ G  P    FN LI+  C+K    +  ELL  M+    +P
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G +    +M+
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    + A      M+  G      TY  LI GL   
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  L  E+  +G  R
Sbjct: 615 GLAKEAQELLSELCSRGALR 634



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 95/217 (43%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C  G++++  E+L ++   G  P    ++ ++   C    F     +L  M A+ 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D      V+N +C+     EA  +   L   G   D V Y  V+ GLC     GD  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+     PN  T+N++I   CR    E    +  +M + G       Y T+I G+
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           C  G  + A  +   M   G+  +V+ YNT+++G C 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 1/196 (0%)

Query: 231 VPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           VP N   F  ++   C +       E+L  M  +  AP    Y  ++   C+S     + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           RV   +  +G   DT     V++ +C+ G + +A  +  ++   G   +  +YN+++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C      + + L  EM+        VT+NTLI  LC +G  +  + +  +M++ G   D+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 410 ITYNTLIQGYCKEGKI 425
             Y T+I G CKEG +
Sbjct: 287 RMYATIIDGICKEGHL 302



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+M+ GYCR   L  A+RL   +          T+  ++ GLC  GR  +A  + +EM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + KG       Y+ +++  C+ G   N
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRN 164


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           + +G   D+VS N +   L  A+ +    + +D       +PN  +    I  LC +GL 
Sbjct: 208 AFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLF 267

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E      +++ E G    I+ + + + G  K    ++  ++ + +   G          +
Sbjct: 268 ERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTV 327

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C+  +  E  ELL ++ +     ++  FN L+  FC+     RV ELL  M++   
Sbjct: 328 LKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGC 387

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  VING CK     EA  +   +   G  P+TV YT V+ GLC  G   DA +
Sbjct: 388 MPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVDAEE 447

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +MI +G  PN  T+N++I+  C+   +E+A  L K+ML  G     ++Y+T+I GL 
Sbjct: 448 LMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLG 507

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G+T+EA  L   M  KGI  + I Y+++     +EG++
Sbjct: 508 KAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRV 547



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 113/221 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ A C  G V E   LLR++   G   +  ++N ++   C  K +G V EL+  MV  +
Sbjct: 187 VLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVD 246

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            AP+  T+  +I  LC++      + V   + E G  PD  MY T+I G+CK G L  A 
Sbjct: 247 CAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVAN 306

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M   GL PN   YN+++ G C  +  +EA+ L  EM  K      VT+N L+   
Sbjct: 307 EILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFF 366

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C +G  D    L E+M   G   DVITY T+I G+CKEG I
Sbjct: 367 CQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLI 407



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 158/335 (47%), Gaps = 20/335 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++V+ N L   L     F+   + L      G +P+       I  +C+ G +E A  
Sbjct: 248 APNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANE 307

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------LI 206
             +++   G+  ++  +N+ L G    +R    WK   +L+   +             L+
Sbjct: 308 ILNRMPSYGLKPNVVCYNTVLKGLCSAER----WKEAEELLSEMFQKDCPLDDVTFNILV 363

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC +G V    ELL Q+L  G +P+   +  +I+ FC++        LL +M +    
Sbjct: 364 DFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCK 423

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +Y  V+ GLC + + ++A  + + + ++G  P+ V + T+I+ LCK G +  A ++
Sbjct: 424 PNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIEL 483

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M+  G  P+  +Y+++I G  +    EEA  L   M++KG    T+ Y+++   L  
Sbjct: 484 LKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSR 543

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            GR ++   +F+ +    I  D + YN +I   CK
Sbjct: 544 EGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCK 578



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 143/333 (42%), Gaps = 29/333 (8%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G +P     +V+ ++   +  F+ ++  L++    G + +  +  L +  +CE G +
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCV 197

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           +EA     KL   G    I ++N+ L G                           C   +
Sbjct: 198 DEAVGLLRKLAFFGCEADIVSYNAVLKG--------------------------LCMAKR 231

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
             +  EL+ +++     P    FN LI   C    F RV E+L  M      PD   Y  
Sbjct: 232 WGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYAT 291

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G+CK      A  + N +   G  P+ V Y TV+ GLC      +A ++  EM  K 
Sbjct: 292 IIDGICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD 351

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              ++ T+N ++  +C+   ++    L ++ML  G     +TY T+I G C  G  DEA 
Sbjct: 352 CPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAV 411

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L + M+  G   + ++Y  +++G C  G+ V+
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRWVD 444



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 137/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N +   L  A  +K A + L        P    +  + +   C++GL++ 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++   G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ G+  +  EL+ Q+++ G  P    FN LI+  C+K    +  ELL  M+    +P
Sbjct: 435 GLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 494

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G +    +M+
Sbjct: 495 DLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQMF 554

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    + A      M+  G      TY  LI GL   
Sbjct: 555 DNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLASE 614

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  L  E+  +G  R
Sbjct: 615 GLAKEAQELLSELCSRGALR 634



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/217 (25%), Positives = 95/217 (43%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C  G++++  E+L ++   G  P    ++ ++   C    F     +L  M A+ 
Sbjct: 117 VVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKG 176

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D      V+N +C+     EA  +   L   G   D V Y  V+ GLC     GD  
Sbjct: 177 CTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVE 236

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+     PN  T+N++I   CR    E    +  +M + G       Y T+I G+
Sbjct: 237 ELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGI 296

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           C  G  + A  +   M   G+  +V+ YNT+++G C 
Sbjct: 297 CKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCS 333



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 89/196 (45%), Gaps = 1/196 (0%)

Query: 231 VPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           VP N   F  ++   C +       E+L  M  +  AP    Y  ++   C+S     + 
Sbjct: 107 VPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRSGGFRNSV 166

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           RV   +  +G   DT     V++ +C+ G + +A  +  ++   G   +  +YN+++ G 
Sbjct: 167 RVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGL 226

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C      + + L  EM+        VT+NTLI  LC +G  +  + +  +M++ G   D+
Sbjct: 227 CMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDI 286

Query: 410 ITYNTLIQGYCKEGKI 425
             Y T+I G CKEG +
Sbjct: 287 RMYATIIDGICKEGHL 302



 Score = 42.0 bits (97), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 3/87 (3%)

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+M+ GYCR   L  A+RL   +          T+  ++ GLC  GR  +A  + +EM
Sbjct: 81  AYNAMVAGYCRAGQLAAARRLAAAV---PVPPNAYTFFPVVRGLCTRGRIADALEVLDEM 137

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + KG       Y+ +++  C+ G   N
Sbjct: 138 SFKGCAPIPPMYHVILEAACRSGGFRN 164


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 165/334 (49%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++  N LF  L   + + + +     ++  G + +  +L + I C C    +  AF A
Sbjct: 88  PTVIDFNRLFGLLARTKQYDLVLALCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSA 147

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIK------IDRTDLVWKLYH--DLIESGYLIQAFCN 211
             K+ ++G   +  T+N+ L G C++      ++  D +    H  DLI    ++   C 
Sbjct: 148 MGKIFKLGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCL 207

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +VSE  +L+ +++ +G  P    +  +++R C+  N     +LL  M  R   P   T
Sbjct: 208 KDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVT 267

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ LCK  +  +A   F++++ +G   +   Y ++I   C  G   D  ++  +MI
Sbjct: 268 YTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMI 327

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + PN  T++++I    +   L EAK L+ EM+ +G    T+TYN+LI GLC   R D
Sbjct: 328 TRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLD 387

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  + + M  KG   D+ TYN LI G+CK  ++
Sbjct: 388 EANQMMDLMVSKGCDPDIWTYNILINGFCKAKQV 421



 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 169/338 (50%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSL-VEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEE 156
           G+ P+ V+ N L + L +E R F+ A++ +D    S   P+  +L   +  LC    + E
Sbjct: 155 GYEPNTVTFNTLLNGLCLEGRVFE-AVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSE 213

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYHDLIES-----GYLIQ 207
           A    +++   G   +  T+   L    K   T    DL+ K+ H  I+        +I 
Sbjct: 214 AVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIID 273

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C DG++ +      ++   G+      +N LI  FC    +   ++LL  M+ R   P
Sbjct: 274 NLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITP 333

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  T+  +I+ L K  K  EA  ++N++  RG  P+T+ Y ++I+GLC    L +A +M 
Sbjct: 334 NVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMM 393

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+ KG  P+ +TYN +I+G+C+   +++  RL ++M  +G    TVTY+TLI G C  
Sbjct: 394 DLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQS 453

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   A  +F+EM  +G+   ++TY  L+ G C  G++
Sbjct: 454 RKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGEL 491



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 170/372 (45%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +   + + + ++     A+D L   +     P+  +  + I  LC+ G +++A
Sbjct: 225 GCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDA 284

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              FS+++  G+  ++ T+NS +       R D   +L  D+I             LI +
Sbjct: 285 LSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDS 344

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK++E  +L  +++  G+ P    +N LI   C  K     ++++  MV++   PD
Sbjct: 345 LVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPD 404

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +ING CK+++  +  R+F  +  RG + DTV Y+T+I G C+   L  A+K++ 
Sbjct: 405 IWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQ 464

Query: 329 EMIHKGLLPNEYTY-----------------------------------NSMIHGYCRID 353
           EM+ +G+ P   TY                                   N +IHG C  +
Sbjct: 465 EMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDIGIYNIIIHGMCNAN 524

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +++A  L   +  KG      +YN +++GLC      EA  LF +M + G   D  TYN
Sbjct: 525 KVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTYN 584

Query: 414 TLIQGYCKEGKI 425
           TLI+ + +   I
Sbjct: 585 TLIRAHLRGNDI 596



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 160/334 (47%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDL++ N + + L        A+D +    + G  PN  +    +  +C+SG    A   
Sbjct: 193 PDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTYGPILNRMCKSGNTASALDL 252

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K++   +   + T+   +    K  R D     + ++   G          LI +FC+
Sbjct: 253 LRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCS 312

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+  +G +LLR ++   + P    F+ LI    ++       +L + M+ R   P+  T
Sbjct: 313 FGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTIT 372

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I GLC  ++  EA ++ + +  +G  PD   Y  +I+G CK   + D  +++ +M 
Sbjct: 373 YNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMS 432

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G++ +  TY+++I G+C+   L  AK++ +EM+ +G     +TY  L+ GLC +G  +
Sbjct: 433 LRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELE 492

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  + ++M +  +  D+  YN +I G C   K+
Sbjct: 493 EALGILDQMHKCKMELDIGIYNIIIHGMCNANKV 526



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 133/292 (45%), Gaps = 9/292 (3%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            +PN  +    I  L + G + EA   ++++   G+  +  T+NS + G     R D   
Sbjct: 331 ITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEAN 390

Query: 194 KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++   ++  G          LI  FC   +V +G  L R++   G++ +   ++ LI  F
Sbjct: 391 QMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGF 450

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+ +      ++   MV++   P   TY  +++GLC + +  EA  + + + +     D 
Sbjct: 451 CQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHKCKMELDI 510

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +Y  +IHG+C    + DA  ++  +  KG+  +  +YN M+ G C+  +L EA  L ++
Sbjct: 511 GIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRK 570

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           M + GY     TYNTLI           +  L EEM + G   D  T   ++
Sbjct: 571 MKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVM 622



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 113/264 (42%), Gaps = 41/264 (15%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y + + SG +      D K  +   L + +L    +P    FN+L       K +  V  
Sbjct: 58  YKERLRSGLV------DIKKDDAVALFQSMLRSRPLPTVIDFNRLFGLLARTKQYDLVLA 111

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M  +  A D +T   +IN  C+ RK   A+     + + GY P+TV + T+++GLC
Sbjct: 112 LCKQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLC 171

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG------ 369
             G + +A ++   M+    +P+  T N++++G C  D + EA  L   M+  G      
Sbjct: 172 LEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQF 231

Query: 370 -YGET----------------------------TVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YG                               VTY  +I  LC  GR D+A   F EM
Sbjct: 232 TYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEM 291

Query: 401 AQKGIFRDVITYNTLIQGYCKEGK 424
             KGI  +V TYN+LI  +C  G+
Sbjct: 292 ETKGIKANVFTYNSLIGSFCSFGR 315


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 159/336 (47%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           F P +   N L D + +    +VA+  L      G  PN  S    I  LC SG +E AF
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVWKLY------HDLIESGYLIQAF 209
             F+++   G   +I T+   + GC    K+     +WKL        +++    LI   
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C++G + E  ++  Q+   G +P  T ++ LI  F +  +    SE  + M++    P+ 
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNV 419

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++ LCK+    +A  +   +   G  P+T+ + T I GLC  G +  A K+   
Sbjct: 420 VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLER 479

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G LPN  TYN ++    R++  EEA  L +E+  +      VTYNT++ G    G 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  LF +   +G   D ITYNT+I  YCK+GK+
Sbjct: 540 MGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKV 575



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 173/388 (44%), Gaps = 29/388 (7%)

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL------FD 114
           +L+  P  N  DP   ++ L Q+++VL  ++  + L S  GF   + + N        + 
Sbjct: 21  VLNSNPIINPRDP--NKQQLLQESDVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYR 78

Query: 115 SLVEARAFKVAMDF-------LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
            ++E    +  MD        +   G +   +     I      G  E+A   F ++ E 
Sbjct: 79  VMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEF 138

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
           G   +++ +N  L   +  ++  ++  LY ++ + G          L++A C + +V   
Sbjct: 139 GCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAA 198

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           ++L  ++   G  P+   +  ++S  C+        EL     A    P    Y  +I+G
Sbjct: 199 HKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDG 253

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           +CK  +   A ++  ++ + G  P+ V Y+ +I+ LC  G +  A  ++ +M  +G   N
Sbjct: 254 MCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDAN 313

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
            +T+  +I G      L EA  L K M+  G     V YNTLI GLC +G  +EA  + +
Sbjct: 314 IHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCD 373

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +M + G   +V TY+ LI G+ K G +V
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLV 401



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC +G +EEA     +++  G   ++ T++  + G  K       
Sbjct: 344 GCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGA 403

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            + ++ +I  G          ++   C +    +   L+ ++  +G  P    FN  I  
Sbjct: 404 SETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKG 463

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C         +LL  M      P+  TY E+++ L +  K  EA+ +F +++ R   P+
Sbjct: 464 LCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y TV++G  + G +G+A +++ + + +G  P+  TYN+MIH YC+   ++ A +L +
Sbjct: 524 LVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583

Query: 364 EMLD-KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            +   K +    +TY +LI G C     +EA    ++   +GI  +  T+N L++ +
Sbjct: 584 RVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 14/169 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +++  + +  H G  P++ + N L D+L     ++ A      +++    PN  +    +
Sbjct: 473 AMKLLERMQGH-GCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVL 531

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL-----LGCIKI-----DRTDLVWKL 195
                +G++ EA   F K    G      T+N+ +      G +KI     +R   + + 
Sbjct: 532 YGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEW 591

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           + D+I    LI   CN   + E    L + +  G+ P    +N L+  F
Sbjct: 592 HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Cucumis sativus]
          Length = 822

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 142/280 (50%), Gaps = 9/280 (3%)

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C  G +E  F    ++ + G+   I T+N  L G   + + D   KL+ +   SG     
Sbjct: 534 CNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNI 593

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +++ +C   ++ +   L  ++L   +   +  +N +I   C+  N     +LL  
Sbjct: 594 HTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLEN 653

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M ++   P+  TY  +I+G+C      +A  + +++++ G+VP+ V YT +I G CK+G 
Sbjct: 654 MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQ 713

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A   W EMI   + PN++TY  MI GYC++ N+E+A  L  +M + G     VTYN 
Sbjct: 714 MDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 773

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           L  G C     D A+ + ++MA +G+  D ITY TL+ G+
Sbjct: 774 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 813



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 150/337 (44%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++V  N L D   +    + A+   D + S   +P   +L   +Q  C+S  IE A
Sbjct: 343 GFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHA 402

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
             A  ++   G+        S +    K  R    ++    ++   +         L+  
Sbjct: 403 ENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCG 462

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGK  E  EL  ++LE G        N LI   C        S ++  M+ R    D
Sbjct: 463 LCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMD 522

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C   K    +R+  ++ +RG  PD   Y  ++ GLC +G L DA K+W 
Sbjct: 523 RITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWD 582

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E    GL+ N +TY  M+ GYC+ + +E+ + L  E+L K     ++ YN +I   C +G
Sbjct: 583 EFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNG 642

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A  L E M  KGI  +  TY++LI G C  G +
Sbjct: 643 NVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLV 679



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I  LC +G + EA     ++ E G+     T+N+ +LG     + +  ++L  ++ + G 
Sbjct: 495 IHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGI 554

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                   +L++  CN GK+ +  +L  +    GL+     +  ++  +C+      V  
Sbjct: 555 QPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVEN 614

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + ++++    ++  Y  +I   C++     A ++  ++K +G +P+   Y+++IHG+C
Sbjct: 615 LFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC 674

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            +G + DA+ +  EM  +G +PN   Y ++I GYC++  ++ A+    EM+         
Sbjct: 675 NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKF 734

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY  +I G C  G  ++A +L  +M + GI  DV+TYN L  G+CK   + N
Sbjct: 735 TYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 786



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 3/233 (1%)

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           W    DL+   Y  Q F N G  S   ++   +   G  P     N L+S   +   F +
Sbjct: 170 WTQAFDLLIHVYSTQ-FRNLG-FSCAVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEK 227

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             E+   M +    PD F++  VIN LCK  K   A  +F  +++ G  P+ V Y  +I+
Sbjct: 228 CCEVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIIN 286

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GLC+ G L +A ++  +M  KG+ PN  TY ++I+G  +++  ++   +  EM+  G+  
Sbjct: 287 GLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNP 346

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             V +N LI G C  G  + A  + + M  K I    +T  +L+QG+CK  +I
Sbjct: 347 NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQI 399



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/309 (25%), Positives = 129/309 (41%), Gaps = 43/309 (13%)

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------DLIESGYLIQAFCN 211
            F  L   G F S+KT N  L   +K +  +   +++         D+     +I A C 
Sbjct: 196 VFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCK 255

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+    EL  ++ + G+ P    +N +I+  C+        EL   M  +   P+  T
Sbjct: 256 GGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKT 315

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +INGL K     +   V +++   G+ P+ V++  +I G CKMG +  A K+   MI
Sbjct: 316 YGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMI 375

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAK-------------------------------- 359
            K + P   T  S++ G+C+ D +E A+                                
Sbjct: 376 SKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYH 435

Query: 360 ---RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
              R  K ML + +  + +    L+ GLC  G+  EA  L+  + +KG     +T N LI
Sbjct: 436 SAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALI 495

Query: 417 QGYCKEGKI 425
            G C  GK+
Sbjct: 496 HGLCGAGKL 504



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/159 (20%), Positives = 69/159 (43%), Gaps = 9/159 (5%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + S G  PN  +    I  +C  GL+E+A     ++++ G   ++  + + + G  K+ +
Sbjct: 654 MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQ 713

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D     + ++I             +I  +C  G + +   LL ++ E G+VP+   +N 
Sbjct: 714 MDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 773

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           L + FC+  +     ++   M       D  TY  +++G
Sbjct: 774 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHG 812



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 1/105 (0%)

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +++ +  KG  P+  T N ++    + +  E+   + + M  +G      ++  +I 
Sbjct: 193 AVDVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVM-SEGACPDVFSFTNVIN 251

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LC  G+ + A  LF +M + GI  +V+TYN +I G C+ G++ N
Sbjct: 252 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDN 296


>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g19440, chloroplastic-like [Cucumis sativus]
          Length = 799

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 142/280 (50%), Gaps = 9/280 (3%)

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C  G +E  F    ++ + G+   I T+N  L G   + + D   KL+ +   SG     
Sbjct: 511 CNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNI 570

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +++ +C   ++ +   L  ++L   +   +  +N +I   C+  N     +LL  
Sbjct: 571 HTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLEN 630

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M ++   P+  TY  +I+G+C      +A  + +++++ G+VP+ V YT +I G CK+G 
Sbjct: 631 MKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQ 690

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A   W EMI   + PN++TY  MI GYC++ N+E+A  L  +M + G     VTYN 
Sbjct: 691 MDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNV 750

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           L  G C     D A+ + ++MA +G+  D ITY TL+ G+
Sbjct: 751 LTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVHGW 790



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 150/337 (44%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++V  N L D   +    + A+   D + S   +P   +L   +Q  C+S  IE A
Sbjct: 320 GFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQIEHA 379

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
             A  ++   G+        S +    K  R    ++    ++   +         L+  
Sbjct: 380 ENALEEILSSGLSIHPDNCYSVVHWLCKKFRYHSAFRFTKMMLSRNFRPSDLLLTMLVCG 439

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGK  E  EL  ++LE G        N LI   C        S ++  M+ R    D
Sbjct: 440 LCKDGKHLEATELWFRLLEKGSPASKVTSNALIHGLCGAGKLPEASRIVKEMLERGLPMD 499

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C   K    +R+  ++ +RG  PD   Y  ++ GLC +G L DA K+W 
Sbjct: 500 RITYNALILGFCNEGKVEGCFRLREEMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWD 559

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E    GL+ N +TY  M+ GYC+ + +E+ + L  E+L K     ++ YN +I   C +G
Sbjct: 560 EFKASGLISNIHTYGIMMEGYCKANRIEDVENLFNELLSKKMELNSIVYNIIIKAHCQNG 619

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A  L E M  KGI  +  TY++LI G C  G +
Sbjct: 620 NVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLV 656



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I  LC +G + EA     ++ E G+     T+N+ +LG     + +  ++L  ++ + G 
Sbjct: 472 IHGLCGAGKLPEASRIVKEMLERGLPMDRITYNALILGFCNEGKVEGCFRLREEMTKRGI 531

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                   +L++  CN GK+ +  +L  +    GL+     +  ++  +C+      V  
Sbjct: 532 QPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKANRIEDVEN 591

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + ++++    ++  Y  +I   C++     A ++  ++K +G +P+   Y+++IHG+C
Sbjct: 592 LFNELLSKKMELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVC 651

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            +G + DA+ +  EM  +G +PN   Y ++I GYC++  ++ A+    EM+         
Sbjct: 652 NIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKF 711

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY  +I G C  G  ++A +L  +M + GI  DV+TYN L  G+CK   + N
Sbjct: 712 TYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDN 763



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 3/233 (1%)

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           W    DL+   Y  Q F N G  S   ++   +   G  P     N  +S   +   F +
Sbjct: 147 WTQAFDLLIHVYSTQ-FRNLG-FSCAVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEK 204

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             E+   M +    PD F++  VIN LCK  K   A  +F  +++ G  P+ V Y  +I+
Sbjct: 205 CCEVFRVM-SEGACPDVFSFTNVINALCKGGKMENAIELFMKMEKLGISPNVVTYNCIIN 263

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GLC+ G L +A ++  +M  KG+ PN  TY ++I+G  +++  ++   +  EM+  G+  
Sbjct: 264 GLCQNGRLDNAFELKEKMTVKGVQPNLKTYGALINGLIKLNFFDKVNHILDEMIGAGFNP 323

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             V +N LI G C  G  + A  + + M  K I    +T  +L+QG+CK  +I
Sbjct: 324 NVVVFNNLIDGYCKMGNIEGALKIKDVMISKNITPTSVTLYSLMQGFCKSDQI 376



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/309 (25%), Positives = 129/309 (41%), Gaps = 43/309 (13%)

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------DLIESGYLIQAFCN 211
            F  L   G F S+KT N  L   +K +  +   +++         D+     +I A C 
Sbjct: 173 VFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGACPDVFSFTNVINALCK 232

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+    EL  ++ + G+ P    +N +I+  C+        EL   M  +   P+  T
Sbjct: 233 GGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPNLKT 292

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +INGL K     +   + +++   G+ P+ V++  +I G CKMG +  A K+   MI
Sbjct: 293 YGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKDVMI 352

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAK-------------------------------- 359
            K + P   T  S++ G+C+ D +E A+                                
Sbjct: 353 SKNITPTSVTLYSLMQGFCKSDQIEHAENALEEILSSGLSIHPDNCYSVVHWLCKKFRYH 412

Query: 360 ---RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
              R  K ML + +  + +    L+ GLC  G+  EA  L+  + +KG     +T N LI
Sbjct: 413 SAFRFTKMMLSRNFRPSDLLLTMLVCGLCKDGKHLEATELWFRLLEKGSPASKVTSNALI 472

Query: 417 QGYCKEGKI 425
            G C  GK+
Sbjct: 473 HGLCGAGKL 481



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 36/181 (19%), Positives = 77/181 (42%), Gaps = 12/181 (6%)

Query: 110 NVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N++  +  +      A+  L+   S G  PN  +    I  +C  GL+E+A     ++++
Sbjct: 609 NIIIKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRK 668

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSE 217
            G   ++  + + + G  K+ + D     + ++I             +I  +C  G + +
Sbjct: 669 EGFVPNVVCYTALIGGYCKLGQMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEK 728

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LL ++ E G+VP+   +N L + FC+  +     ++   M       D  TY  +++
Sbjct: 729 ANNLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEGLPVDEITYTTLVH 788

Query: 278 G 278
           G
Sbjct: 789 G 789



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 1/105 (0%)

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +++ +  KG  P+  T N  +    + +  E+   + + M  +G      ++  +I 
Sbjct: 170 AVDVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVM-SEGACPDVFSFTNVIN 228

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LC  G+ + A  LF +M + GI  +V+TYN +I G C+ G++ N
Sbjct: 229 ALCKGGKMENAIELFMKMEKLGISPNVVTYNCIINGLCQNGRLDN 273


>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
          Length = 703

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/354 (31%), Positives = 170/354 (48%), Gaps = 21/354 (5%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-------FSPNPNSLELYI 145
           F+ L S  G +P + S N L D+ V AR F  A  F  S          +PN  +  + +
Sbjct: 106 FRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVL 165

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           + LC  G ++ A   F  L+   V     T+++ + G  K DR D    L  ++  SG  
Sbjct: 166 RSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQ 225

Query: 206 IQAFCNDG------KVSEGYELLRQ----VLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
               C +       K  E  +++R     V + G  P    +N ++   C+   F  V E
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   MVA N  PD  TY  +I+GLC+S     A RV++++ + G V D  MY +++ G C
Sbjct: 286 VWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ET 373
           + G + +A K W      GL  N  TYN MI G      ++EA  L  ++L+K       
Sbjct: 346 QAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELW-DLLEKDVACIPD 403

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TVT+ TLI GLC +G  ++A+ +FEE    G   DV +Y+++I G C  G++V+
Sbjct: 404 TVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVD 457



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 12/348 (3%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQ 146
           +R +  L    G  P+L + NV+ D L +   FK   +  +   +    P+  +  + I 
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC SG ++ A   +S++ + G+      +NS + G  +  R    WK +     +G   
Sbjct: 308 GLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRN 367

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELL 257
                 +I+   + G V E  EL   + +D   +P+   F  LI   C+     +   + 
Sbjct: 368 LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIF 427

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
                  +  D F+Y  +INGLC   + ++A +V+  + + G  P++ +Y  +I G C++
Sbjct: 428 EEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQV 487

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
               DA +++ +M   G  P   TYN++I G C+ +  +EA  + +EM++ G+     TY
Sbjct: 488 YRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTY 547

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +LI GL    + D+A  +++++  KG+  DV+ +N LI G C  GK+
Sbjct: 548 GSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKV 595



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 172/374 (45%), Gaps = 54/374 (14%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD ++ + L   L +      A+D LD    +G  P+       +    ++G  E+   
Sbjct: 190 APDCITYSTLMCGLAKQDRLDHALDLLDEMPRSGVQPDVVCYNALLGGCFKAGEFEKVMR 249

Query: 160 AFSKL-KEMGVFGSIKTWNSALLGCIKIDR---TDLVWK------LYHDLIESGYLIQAF 209
            + KL K+ G   ++ T+N  L G  K  R      VW+      L  D+I  G LI   
Sbjct: 250 VWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGL 309

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL------------- 256
           C  G V     +  ++++ GLV +   +N L+  FC+    GRV E              
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQA---GRVQEAWKFWDSAGFAGLR 366

Query: 257 -----------------------LHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAYRV 291
                                  L  ++ ++ A  PD  T+  +I+GLC++    +A+ +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F + +  G   D   Y+++I+GLC +G L DA K++ +M   G  PN + YN++I G+C+
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQ 486

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +    +A R++ +M D G   T +TYNTLI GLC   +  EA  +  EM + G   D+ T
Sbjct: 487 VYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITT 546

Query: 412 YNTLIQGYCKEGKI 425
           Y +LI+G   + KI
Sbjct: 547 YGSLIRGLFSDKKI 560



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP--NPNSLELYIQCLCESGLIEEAF 158
           G   D    N L     +A   + A  F DS GF+   N  +  + I+ L +SG+++EA 
Sbjct: 329 GLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAI 388

Query: 159 CAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
             +  L K++       T+ + + G  +    +  + ++ +   SG          +I  
Sbjct: 389 ELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMING 448

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G++ +  ++  ++ +DG  P +  +N LIS FC+         +   M     +P 
Sbjct: 449 LCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPT 508

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+ K  EA  V  ++ E G+ PD   Y ++I GL     + DA  +W 
Sbjct: 509 VITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWK 568

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-KGYGETTVTYNTLIAGLCLH 387
           ++++KGL  +   +N +IHG C    ++EA  +  +M + K      VTYNTL+ GL   
Sbjct: 569 QILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYET 628

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D+A  L+  + + G+  D+I+YNT I+G C   +I
Sbjct: 629 GYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRI 666



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 26/370 (7%)

Query: 39  LYTEIAKQVCKITRTKPRWEQ------TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           +Y  + K  C+  R +  W+         L ++ ++N      F   +  +     +I  
Sbjct: 336 MYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDE-----AIEL 390

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           +  L       PD V+   L   L +     +AF +  +    +G   +  S    I  L
Sbjct: 391 WDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI-FEEARVSGKQLDVFSYSSMINGL 449

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C  G + +A   + K+ + G   +   +N+ + G  ++ RT    ++Y  + ++G     
Sbjct: 450 CNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTV 509

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C   K  E   + R+++E+G  P+ T +  LI      K       +   
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQ 569

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMG 318
           ++ +    D   +  +I+GLC + K  EA  VF+D+KE+   P + V Y T++ GL + G
Sbjct: 570 ILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETG 629

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
           ++  A  +W  +   GL P+  +YN+ I G C  D + E  +L  E+L +G   T +T+N
Sbjct: 630 YIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWN 689

Query: 379 TLIAGLCLHG 388
            L+  +  +G
Sbjct: 690 ILVRAVIKYG 699



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 6/143 (4%)

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH----KGLLPNEYT 341
           L+A+R    +   G  P    +  ++    +     DA   +  + H    + + PN  T
Sbjct: 103 LDAFRALPSI--LGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQT 160

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN ++   C   +L+ A  L   +  +      +TY+TL+ GL    R D A  L +EM 
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDCITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 402 QKGIFRDVITYNTLIQGYCKEGK 424
           + G+  DV+ YN L+ G  K G+
Sbjct: 221 RSGVQPDVVCYNALLGGCFKAGE 243


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 157/332 (47%), Gaps = 16/332 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P     N +  SLV  + +   +      +  G +P+  +L + I C C    I  AF  
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHD-LIESGY---------LIQAF 209
           F+ + + G   +  T N+ + G C + +    ++  +HD L+  G+         LI   
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALY--FHDQLVAQGFQLDQVSYGTLINGL 172

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G+      LLR++    + P+   +N +I+  C+ K  G   ++   M+ +  +PD 
Sbjct: 173 CKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDV 232

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+G C      EA+ + N++K +   P+   +  +I  L K G + +A+ +   
Sbjct: 233 VTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAV 292

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+   + P+ +TYNS+I GY  +D ++ AK +   M  +G       Y  +I GLC    
Sbjct: 293 MMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKM 352

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA  LFEEM  K +  D++TYN+LI G CK
Sbjct: 353 VDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCK 384



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 159/354 (44%), Gaps = 13/354 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
            Q ++ L+   F  +    GF P+ ++ N L   L      K A+ F D   + GF  + 
Sbjct: 104 HQAHITLAFSVFANILKR-GFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQ 162

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S    I  LC++G  +       KL+   V   +  +N+ +    K         +Y +
Sbjct: 163 VSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 222

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +I  G          LI  FC  G + E + LL ++    + P    FN LI    ++  
Sbjct: 223 MIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGK 282

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                 LL  M+     PD FTY  +I+G     +   A  VF  + +RG  PD   YT 
Sbjct: 283 MKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTN 342

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+GLCK   + +A  ++ EM HK ++P+  TYNS+I G C+  +LE A  L K M ++G
Sbjct: 343 MINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQG 402

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                 +Y  L+ GLC  GR ++A  +F+ +  KG   +V  Y  LI   CK G
Sbjct: 403 IQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAG 456



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 149/331 (45%), Gaps = 30/331 (9%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R  + L  H    PD+V  N + +SL + +    A D        G SP+  +    I  
Sbjct: 183 RLLRKLEGH-SVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHG 241

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
            C  G ++EAF   +++K   +  ++ T+N                           LI 
Sbjct: 242 FCIMGHLKEAFSLLNEMKLKNINPNVCTFN--------------------------ILID 275

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A   +GK+ E   LL  +++  + P+   +N LI  +           + ++M  R   P
Sbjct: 276 ALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTP 335

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +INGLCK++   EA  +F ++K +  +PD V Y ++I GLCK   L  A  + 
Sbjct: 336 DVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALC 395

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  +G+ P+ Y+Y  ++ G C+   LE+AK + + +L KGY      Y  LI  LC  
Sbjct: 396 KRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKA 455

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           G  DEA  L  +M  KG   D +T++ +I+ 
Sbjct: 456 GFFDEALDLKSKMEDKGCMPDAVTFDIIIRA 486



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 93/194 (47%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FN ++S     K++  V  L          PD  T   +IN  C       A+ V
Sbjct: 55  PPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 114

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F ++ +RG+ P+ +   T+I GLC  G +  A     +++ +G   ++ +Y ++I+G C+
Sbjct: 115 FANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGTLINGLCK 174

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               +   RL +++         V YNT+I  LC +    +A  ++ EM  KGI  DV+T
Sbjct: 175 TGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 234

Query: 412 YNTLIQGYCKEGKI 425
           Y TLI G+C  G +
Sbjct: 235 YTTLIHGFCIMGHL 248



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 75/162 (46%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P  F +  +++ L  ++       +F   +  G  PD    + +I+  C    
Sbjct: 48  MLLMRPPPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAH 107

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A  ++  ++ +G  PN  T N++I G C    +++A   H +++ +G+    V+Y T
Sbjct: 108 ITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQLDQVSYGT 167

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           LI GLC  G T     L  ++    +  DV+ YNT+I   CK
Sbjct: 168 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCK 209


>gi|356526063|ref|XP_003531639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 1 [Glycine max]
 gi|356526065|ref|XP_003531640.1| PREDICTED: pentatricopeptide repeat-containing protein At4g26680,
           mitochondrial-like isoform 2 [Glycine max]
          Length = 522

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 177/372 (47%), Gaps = 29/372 (7%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
            L  QN+ + S++   W+  H   S  L + ++L  +L + R FK    FL  T  S  P
Sbjct: 76  LLALQNDHVSSLKLSTWVLKHNPSSHTLDTHSILLHTLSKHRQFKTTQKFLTQTLSSHPP 135

Query: 139 NSL-------------------ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           ++L                   +   + L  +     A   ++ +KE G   ++++ N+ 
Sbjct: 136 HTLFDALLFSYRLCNSSSPLVFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAF 195

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDG 229
           L   +++ R D+    Y ++               +I+A+C  G+V +G+++L ++++ G
Sbjct: 196 LSSLLRLRRADIALAFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMG 255

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           L P   +FN LIS +C K  FG   ++   MV     P+  T+  +ING CK RK  EA 
Sbjct: 256 LSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEAN 315

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           RVFN++K     P  V Y T+++G  ++G      +++ EM+  GL  +  TYN++I G 
Sbjct: 316 RVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILGL 375

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+    ++A    +E+  +       T++ LI G C+   ++ A+ ++  M + G   + 
Sbjct: 376 CKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCSPNG 435

Query: 410 ITYNTLIQGYCK 421
            T+  LI  +CK
Sbjct: 436 QTFQMLISAFCK 447



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 156/362 (43%), Gaps = 32/362 (8%)

Query: 69  NFNDPLFFREFLK--QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           N + PL F    K     N          L   +GFSP + SCN    SL+  R   +A+
Sbjct: 150 NSSSPLVFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIAL 209

Query: 127 DFLDS----TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
            F       +  SPN  +L + I+  C  G +++ F    K+ +MG+  ++ ++N+    
Sbjct: 210 AFYREIRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNT---- 265

Query: 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
                                 LI  +CN G      ++   ++E+G+ P    FN LI+
Sbjct: 266 ----------------------LISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLIN 303

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC+++     + + + M   N  P   TY  ++NG  +        RV+ ++   G   
Sbjct: 304 GFCKERKLHEANRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKA 363

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D + Y  +I GLCK G    A     E+  + L+PN  T++++I G C  +N E A  ++
Sbjct: 364 DILTYNALILGLCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIY 423

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           + M+  G      T+  LI+  C +   D A  +  +M  + +  D+ T + L  G C+ 
Sbjct: 424 RSMVRSGCSPNGQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDGLCRC 483

Query: 423 GK 424
           GK
Sbjct: 484 GK 485



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/252 (25%), Positives = 118/252 (46%), Gaps = 12/252 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++VS N L         F +A+     +   G  PN  +    I   C+   + EA
Sbjct: 255 GLSPNVVSFNTLISGYCNKGLFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKLHEA 314

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++K   V  S+ T+N+ L G  ++  +++  ++Y +++ +G          LI  
Sbjct: 315 NRVFNEMKVANVDPSVVTYNTLLNGYGQVGDSEMGVRVYEEMMRNGLKADILTYNALILG 374

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGK  +    +R++ ++ LVP  + F+ LI+  C + N  R   +  +MV    +P+
Sbjct: 375 LCKDGKTKKAAGFVRELDKENLVPNASTFSALITGQCVRNNSERAFLIYRSMVRSGCSPN 434

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T++ +I+  CK+     A +V  D+  R   PD    + +  GLC+ G    A  +  
Sbjct: 435 GQTFQMLISAFCKNEDFDGAVQVLRDMLGRLMSPDLSTMSELCDGLCRCGKNQLALALCS 494

Query: 329 EMIHKGLLPNEY 340
           EM  + LLP+ +
Sbjct: 495 EMEVRRLLPDGF 506



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/157 (27%), Positives = 78/157 (49%), Gaps = 1/157 (0%)

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
             ++ +   L  + K   A  ++  +KE G+ P        +  L ++     A   + E
Sbjct: 155 LVFDSLFKTLAHTNKFRHATHIYTLMKEHGFSPTVQSCNAFLSSLLRLRRADIALAFYRE 214

Query: 330 MIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +  +  + PN YT N +I  YC +  +++   + ++M+D G     V++NTLI+G C  G
Sbjct: 215 IRRRSCVSPNVYTLNMIIRAYCMLGEVQKGFDMLEKMMDMGLSPNVVSFNTLISGYCNKG 274

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A  +   M + G+  +V+T+NTLI G+CKE K+
Sbjct: 275 LFGLALKVKSLMVENGVQPNVVTFNTLINGFCKERKL 311


>gi|125569067|gb|EAZ10582.1| hypothetical protein OsJ_00414 [Oryza sativa Japonica Group]
          Length = 1003

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 154/325 (47%), Gaps = 29/325 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N L D L +   F  A      +   G  PN  +  + I  LC+ G+IE+A
Sbjct: 333 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 392

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
            C F K+++ G+  ++  +NS                          LI  +C  G +  
Sbjct: 393 LCLFDKMRDKGIKVTVYPYNS--------------------------LINGYCKQGSLDR 426

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LL  ++++GL P   +++ LI+  C   +     EL   M  R  A +N+T+  +IN
Sbjct: 427 ARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALIN 486

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK +K  EA R+F+ + +   +P+ V +  +I G C +G +  A +++ +M+  GL P
Sbjct: 487 GFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKP 546

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + YTY S+I G C    + +A     ++ +        +   L+ G    GR  E YHL+
Sbjct: 547 DNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLW 606

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           +EMA +G+  D++++  ++    K+
Sbjct: 607 DEMAVRGVKLDLVSFTIIVYAALKQ 631



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 12/316 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR   V M+   S G   +     + +  LC++  ++EA    + +  +GV     T+ +
Sbjct: 217 ARGLVVRME---SEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 273

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  +++  ++  ++ HD+I  G+         +I        V E + L  ++ + G
Sbjct: 274 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLG 333

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           +VP   A+N LI + C+ + F     L   M  R   P+  TY  +I+ LCK     +A 
Sbjct: 334 MVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDAL 393

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F+ ++++G       Y ++I+G CK G L  AR +   M+ +GL P   +Y+ +I G 
Sbjct: 394 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL 453

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           CR  +L     LH+EM ++G      T+  LI G C   + DEA  LF++M    +  + 
Sbjct: 454 CRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNE 513

Query: 410 ITYNTLIQGYCKEGKI 425
           +T+N +I+GYC  G I
Sbjct: 514 VTFNVMIEGYCLVGNI 529



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 16/317 (5%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR F   +D    +   PN  +  + I+  C  G I +AF  + ++ EMG+     T+ S
Sbjct: 498 ARLFDKMID----SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRS 553

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY----------LIQAFCNDGKVSEGYELLRQVLED 228
            + G           +   DL E+ Y          L+  F  +G+ +E Y L  ++   
Sbjct: 554 LISGLCLTSGVSKANEFVADL-ENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVR 612

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+  +  +F  ++    ++ +  +   L   M  +   PD+  Y  +I+ L K    ++A
Sbjct: 613 GVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQA 672

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              ++ +   GY P+TV +T +I+ LCK G+LG A  +  EM+   +LPN++TYN  +  
Sbjct: 673 LNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDY 732

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +    ++E+AK LH  ML +G+  + V++N LI GLC  G+  EA  L  ++ + G   D
Sbjct: 733 FATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 791

Query: 409 VITYNTLIQGYCKEGKI 425
            I+Y+T+I   CK G I
Sbjct: 792 CISYSTIIHELCKMGDI 808



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESG-----YL----IQAFCNDGKVSEGYELLRQV 225
           T +  L   +KI +  L   L+  +++SG     Y+    I+A+C    +     L+ ++
Sbjct: 165 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 224

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
             +G+      +N L+   C+        E+ + MV      D  TY  ++ G C+  + 
Sbjct: 225 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 284

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A R+ +D+   G+VP     + +I  L K   + +A  +  ++   G++PN + YN++
Sbjct: 285 EMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNAL 344

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I   C+ +  ++A RL KEM  +G     VTY  LI  LC  G  ++A  LF++M  KGI
Sbjct: 345 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 404

Query: 406 FRDVITYNTLIQGYCKEGKI 425
              V  YN+LI GYCK+G +
Sbjct: 405 KVTVYPYNSLINGYCKQGSL 424



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 1/214 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I A   +  + +      Q++ DG  P       LI+  C+    G    L   M+A N
Sbjct: 659 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 718

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+ FTY   ++    +   +E  +  +    +G++   V +  +I GLCK G + +A 
Sbjct: 719 VLPNKFTYNCFLDYFA-TEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAI 777

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  ++   G  P+  +Y+++IH  C++ ++ +A  L  EML KG     V YN  I   
Sbjct: 778 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 837

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +HG +D+A  ++  M + G+  +  TY  L+ G
Sbjct: 838 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C  G +     L +++L   ++P    +N  +  F  + +  +  +L H+ + + 
Sbjct: 694 LINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL-HSAMLQG 752

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                 ++  +I GLCK+ K  EA  + + + E G+ PD + Y+T+IH LCKMG +  A 
Sbjct: 753 HLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAF 812

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           ++W EM++KGL P+   YN  I  +C +    ++A  ++  M+  G      TY  L++G
Sbjct: 813 ELWNEMLYKGLKPDVVAYNIFIR-WCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 871

Query: 384 LCL 386
           + L
Sbjct: 872 ISL 874



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L  G+       ++++    + + F    +L   M+      D + Y   I   C+SR  
Sbjct: 155 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 214

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A  +   ++  G     V Y  +++GLCK   + +A ++   M++ G+  +E TY ++
Sbjct: 215 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 274

Query: 346 IHGYCRIDNLEEAKRLHKEML-----------------------------------DKGY 370
           ++G+CR++ LE A R+  +M+                                   D G 
Sbjct: 275 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 334

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 YN LI  LC + R D+A  LF+EMA +G+  + +TY  LI   CK G I
Sbjct: 335 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 389



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/228 (20%), Positives = 95/228 (41%), Gaps = 11/228 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD +    + D+L +      A++  D     G+SPN  +  + I  LC+SG +  A
Sbjct: 648 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSA 707

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL--------LGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
                ++    V  +  T+N  L        +   K   + ++      ++    LI+  
Sbjct: 708 ELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGL 767

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK+ E  +L+ ++ E G  P+  +++ +I   C+  +  +  EL + M+ +   PD 
Sbjct: 768 CKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDV 827

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             Y   I       +  +A  ++ ++   G  P+   Y  ++ G+  M
Sbjct: 828 VAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLM 875


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 62  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 121

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 122 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP++V +TT+I G C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 241

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDKI 301

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+    D + Y  LI G C+EG  V+
Sbjct: 302 TYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVD 353



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 154/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 92  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAI 151

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 152 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKI 211

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP +  F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 212 DDANELFDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 271

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI +  
Sbjct: 272 IYGLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENT 331

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G CR     +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 332 RLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 391

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 84/200 (42%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D     G  P+ 
Sbjct: 242 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKGLKPDK 300

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +          N+ L         D+V+     
Sbjct: 301 ITYTTLIDGCCKDGDLDTAFEHRKRMIQ---------ENTRL--------DDVVYTA--- 340

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G   +  ++LR++L  GL P+   +  +I+ FC+K +  + S+LL 
Sbjct: 341 ------LISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 394

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 395 EMQRDGHVPSVVTYNVLMNG 414


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 171/339 (50%), Gaps = 17/339 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           + G  PD+++C  L      +   + A   M+ L+++G  P+  +  + I   C+SG I+
Sbjct: 135 YQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEID 194

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALL-----GCIK-----IDRTDLVWKLYHDLIESGYL 205
           +A      L+ M V   + T+N+ L      G +K     +DR  +  + Y D+I    L
Sbjct: 195 KAL---QVLERMSVAPDVVTYNTILRSLCDSGKLKEAMEVLDR-QMQRECYPDVITYTIL 250

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+A CND  V +  +LL ++ + G  P+   +N LI+  C++       + L+ M     
Sbjct: 251 IEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGC 310

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  T+  ++  +C + + ++A R+  D+  +G  P  V +  +I+ LC+   LG A  
Sbjct: 311 QPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAID 370

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +M   G +PN  +YN ++HG+C+   ++ A    + M+ +G     VTYNTL+  LC
Sbjct: 371 VLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC 430

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G+ D A  +  +++ KG    +ITYNT+I G  K GK
Sbjct: 431 KDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 469



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 12/332 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+V+ N +  SL ++   K AM+ LD        P+  +  + I+  C    + +A 
Sbjct: 205 VAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAM 264

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
               ++++ G    + T+N  + G  K  R D   K  +++         I    ++++ 
Sbjct: 265 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSM 324

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  +   LL  +L  G  P    FN LI+  C K+  GR  ++L  M      P++
Sbjct: 325 CSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNS 384

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +++G C+ +K   A      +  RG  PD V Y T++  LCK G    A ++  +
Sbjct: 385 LSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQ 444

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +  KG  P   TYN++I G  ++   E A  L +EM  KG     +TY+TL+ GL   G+
Sbjct: 445 LSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGK 504

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA  +F +M    I    +TYN ++ G CK
Sbjct: 505 VDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCK 536



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 148/327 (45%), Gaps = 12/327 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++         AM  LD     G  P+  +  + I  +C+ G ++EA   
Sbjct: 242 PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKF 301

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            + +   G   ++ T N  L       R     +L  D++  G          LI   C 
Sbjct: 302 LNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCR 361

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +    ++L ++ + G +P + ++N L+  FC++K   R  E L  MV+R   PD  T
Sbjct: 362 KRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVT 421

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K   A  + N L  +G  P  + Y TVI GL K+G    A ++  EM 
Sbjct: 422 YNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMR 481

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY++++ G      ++EA ++  +M       + VTYN ++ GLC   +T 
Sbjct: 482 RKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTS 541

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQG 418
            A      M +KG      TY  LI+G
Sbjct: 542 RAIDFLAYMVEKGCKPTKATYTILIEG 568



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++    +G++ EG + L +++  G +P+  A   LI  FC      + + ++  +     
Sbjct: 114 LRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGA 173

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I G CKS +  +A +V   L+     PD V Y T++  LC  G L +A +
Sbjct: 174 VPDVITYNVLIGGYCKSGEIDKALQV---LERMSVAPDVVTYNTILRSLCDSGKLKEAME 230

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +    + +   P+  TY  +I   C    + +A +L  EM  KG     VTYN LI G+C
Sbjct: 231 VLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 290

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             GR DEA      M   G   +VIT+N +++  C  G+
Sbjct: 291 KEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGR 329



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 140/300 (46%), Gaps = 20/300 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ NVL + + +      A+ FL++    G  PN  +  + ++ +C +G   +A
Sbjct: 274 GCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDA 333

Query: 158 FCAFSKLKEMGVFGSIKTWN--------SALLGCIKIDRTDLVWKL-YHDLIESGY---- 204
               + +   G   S+ T+N          LLG       D++ K+  H  + +      
Sbjct: 334 ERLLADMLRKGCSPSVVTFNILINFLCRKRLLG----RAIDVLEKMPKHGCMPNSLSYNP 389

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  FC + K+    E L  ++  G  P+   +N L++  C+        E+L+ + ++ 
Sbjct: 390 LLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKG 449

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P   TY  VI+GL K  K   A  +  +++ +G  PD + Y+T++ GL   G + +A 
Sbjct: 450 CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAI 509

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++ +M    + P+  TYN+++ G C+      A      M++KG   T  TY  LI G+
Sbjct: 510 KIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIEGI 569



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 3/171 (1%)

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           + L  M+ +   PD      +I G C+S K  +A R+   L+  G VPD + Y  +I G 
Sbjct: 128 KFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGY 187

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G +  A ++   M    + P+  TYN+++   C    L+EA  +    + +      
Sbjct: 188 CKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDV 244

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +TY  LI   C      +A  L +EM +KG   DV+TYN LI G CKEG++
Sbjct: 245 ITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGICKEGRL 295



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 72/139 (51%), Gaps = 3/139 (2%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           E  +    +  +G +PD +  T++I G C+ G    A ++   + + G +P+  TYN +I
Sbjct: 125 EGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLI 184

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GYC+   +++A ++ + M         VTYNT++  LC  G+  EA  + +   Q+  +
Sbjct: 185 GGYCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECY 241

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DVITY  LI+  C +  +
Sbjct: 242 PDVITYTILIEATCNDSGV 260



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 3/112 (2%)

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L + G L +  K    MI++G +P+     S+I G+CR     +A R+ + + + G    
Sbjct: 117 LVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPD 176

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +TYN LI G C  G  D+A  + E M+   +  DV+TYNT+++  C  GK+
Sbjct: 177 VITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKL 225



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 44/87 (50%)

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           E+  N  +    R   LEE  +  + M+ +G     +   +LI G C  G+T +A  + E
Sbjct: 107 EFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIME 166

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   G   DVITYN LI GYCK G+I
Sbjct: 167 ILENSGAVPDVITYNVLIGGYCKSGEI 193


>gi|13872949|dbj|BAB44054.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 909

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/325 (26%), Positives = 154/325 (47%), Gaps = 29/325 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N L D L +   F  A      +   G  PN  +  + I  LC+ G+IE+A
Sbjct: 356 GMVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDA 415

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
            C F K+++ G+  ++  +NS                          LI  +C  G +  
Sbjct: 416 LCLFDKMRDKGIKVTVYPYNS--------------------------LINGYCKQGSLDR 449

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LL  ++++GL P   +++ LI+  C   +     EL   M  R  A +N+T+  +IN
Sbjct: 450 ARGLLSGMVKEGLTPTAASYSPLIAGLCRNGDLSSCMELHREMAERGIAWNNYTFTALIN 509

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK +K  EA R+F+ + +   +P+ V +  +I G C +G +  A +++ +M+  GL P
Sbjct: 510 GFCKDKKMDEAARLFDKMIDSNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKP 569

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + YTY S+I G C    + +A     ++ +        +   L+ G    GR  E YHL+
Sbjct: 570 DNYTYRSLISGLCLTSGVSKANEFVADLENSYAVLNNFSLTALLYGFFREGRFTETYHLW 629

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           +EMA +G+  D++++  ++    K+
Sbjct: 630 DEMAVRGVKLDLVSFTIIVYAALKQ 654



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/316 (27%), Positives = 153/316 (48%), Gaps = 12/316 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR   V M+   S G   +     + +  LC++  ++EA    + +  +GV     T+ +
Sbjct: 240 ARGLVVRME---SEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRT 296

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  +++  ++  ++ HD+I  G+         +I        V E + L  ++ + G
Sbjct: 297 LVYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLG 356

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           +VP   A+N LI + C+ + F     L   M  R   P+  TY  +I+ LCK     +A 
Sbjct: 357 MVPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDAL 416

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F+ ++++G       Y ++I+G CK G L  AR +   M+ +GL P   +Y+ +I G 
Sbjct: 417 CLFDKMRDKGIKVTVYPYNSLINGYCKQGSLDRARGLLSGMVKEGLTPTAASYSPLIAGL 476

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           CR  +L     LH+EM ++G      T+  LI G C   + DEA  LF++M    +  + 
Sbjct: 477 CRNGDLSSCMELHREMAERGIAWNNYTFTALINGFCKDKKMDEAARLFDKMIDSNVIPNE 536

Query: 410 ITYNTLIQGYCKEGKI 425
           +T+N +I+GYC  G I
Sbjct: 537 VTFNVMIEGYCLVGNI 552



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 155/317 (48%), Gaps = 16/317 (5%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           AR F   +D    +   PN  +  + I+  C  G I +AF  + ++ EMG+     T+ S
Sbjct: 521 ARLFDKMID----SNVIPNEVTFNVMIEGYCLVGNIRKAFQLYDQMVEMGLKPDNYTYRS 576

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY----------LIQAFCNDGKVSEGYELLRQVLED 228
            + G           +   DL E+ Y          L+  F  +G+ +E Y L  ++   
Sbjct: 577 LISGLCLTSGVSKANEFVADL-ENSYAVLNNFSLTALLYGFFREGRFTETYHLWDEMAVR 635

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+  +  +F  ++    ++ +  +   L   M  +   PD+  Y  +I+ L K    ++A
Sbjct: 636 GVKLDLVSFTIIVYAALKQHDKEKSCVLFREMKEQGVKPDDIFYTCMIDALSKEENMIQA 695

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              ++ +   GY P+TV +T +I+ LCK G+LG A  +  EM+   +LPN++TYN  +  
Sbjct: 696 LNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDY 755

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +    ++E+AK LH  ML +G+  + V++N LI GLC  G+  EA  L  ++ + G   D
Sbjct: 756 FATEGDMEKAKDLHSAML-QGHLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPD 814

Query: 409 VITYNTLIQGYCKEGKI 425
            I+Y+T+I   CK G I
Sbjct: 815 CISYSTIIHELCKMGDI 831



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 127/260 (48%), Gaps = 9/260 (3%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESG-----YL----IQAFCNDGKVSEGYELLRQV 225
           T +  L   +KI +  L   L+  +++SG     Y+    I+A+C    +     L+ ++
Sbjct: 188 TASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNLDGARGLVVRM 247

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
             +G+      +N L+   C+        E+ + MV      D  TY  ++ G C+  + 
Sbjct: 248 ESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTLVYGFCRMEEL 307

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A R+ +D+   G+VP     + +I  L K   + +A  +  ++   G++PN + YN++
Sbjct: 308 EMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGMVPNVFAYNAL 367

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I   C+ +  ++A RL KEM  +G     VTY  LI  LC  G  ++A  LF++M  KGI
Sbjct: 368 IDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMIEDALCLFDKMRDKGI 427

Query: 406 FRDVITYNTLIQGYCKEGKI 425
              V  YN+LI GYCK+G +
Sbjct: 428 KVTVYPYNSLINGYCKQGSL 447



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 55/214 (25%), Positives = 100/214 (46%), Gaps = 1/214 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I A   +  + +      Q++ DG  P       LI+  C+    G    L   M+A N
Sbjct: 682 MIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSAELLCKEMLAGN 741

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+ FTY   ++    +   +E  +  +    +G++   V +  +I GLCK G + +A 
Sbjct: 742 VLPNKFTYNCFLDYFA-TEGDMEKAKDLHSAMLQGHLASIVSFNILIKGLCKAGKIQEAI 800

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  ++   G  P+  +Y+++IH  C++ ++ +A  L  EML KG     V YN  I   
Sbjct: 801 DLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDVVAYNIFIRWC 860

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +HG +D+A  ++  M + G+  +  TY  L+ G
Sbjct: 861 NVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 894



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C  G +     L +++L   ++P    +N  +  F  + +  +  +L H+ + + 
Sbjct: 717 LINNLCKSGYLGSAELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDL-HSAMLQG 775

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                 ++  +I GLCK+ K  EA  + + + E G+ PD + Y+T+IH LCKMG +  A 
Sbjct: 776 HLASIVSFNILIKGLCKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAF 835

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           ++W EM++KGL P+   YN  I  +C +    ++A  ++  M+  G      TY  L++G
Sbjct: 836 ELWNEMLYKGLKPDVVAYNIFIR-WCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSG 894

Query: 384 LCL 386
           + L
Sbjct: 895 ISL 897



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 100/235 (42%), Gaps = 35/235 (14%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           L  G+       ++++    + + F    +L   M+      D + Y   I   C+SR  
Sbjct: 178 LSSGITVNQYTASQILFSLVKIRQFALARDLFDKMLQSGVHLDEYVYTAGIRAYCESRNL 237

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A  +   ++  G     V Y  +++GLCK   + +A ++   M++ G+  +E TY ++
Sbjct: 238 DGARGLVVRMESEGVKASAVPYNVLMYGLCKNMRVQEAVEVKNVMVNIGVTADEVTYRTL 297

Query: 346 IHGYCRIDNLEEAKRLHKEML-----------------------------------DKGY 370
           ++G+CR++ LE A R+  +M+                                   D G 
Sbjct: 298 VYGFCRMEELEMALRITHDMIRLGFVPSEANCSFMIDELRKKELVEEAFSLACKLGDLGM 357

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 YN LI  LC + R D+A  LF+EMA +G+  + +TY  LI   CK G I
Sbjct: 358 VPNVFAYNALIDKLCKNERFDDADRLFKEMAGRGLEPNEVTYAILIHALCKRGMI 412



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 49/234 (20%), Positives = 97/234 (41%), Gaps = 11/234 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD +    + D+L +      A++  D     G+SPN  +  + I  LC+SG +  A
Sbjct: 671 GVKPDDIFYTCMIDALSKEENMIQALNCWDQMVVDGYSPNTVTHTVLINNLCKSGYLGSA 730

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL--------LGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
                ++    V  +  T+N  L        +   K   + ++      ++    LI+  
Sbjct: 731 ELLCKEMLAGNVLPNKFTYNCFLDYFATEGDMEKAKDLHSAMLQGHLASIVSFNILIKGL 790

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  GK+ E  +L+ ++ E G  P+  +++ +I   C+  +  +  EL + M+ +   PD 
Sbjct: 791 CKAGKIQEAIDLMSKITESGFSPDCISYSTIIHELCKMGDINKAFELWNEMLYKGLKPDV 850

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             Y   I       +  +A  ++ ++   G  P+   Y  ++ G+  M   G A
Sbjct: 851 VAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTYRALLSGISLMVSKGQA 904


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 163/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D V+   L + L +    + A + L   +     PN     + +  LC+ GL+ EA
Sbjct: 178 GFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEA 237

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              +S +   G+   + T+   + G   + +   V +L  D+++            LI A
Sbjct: 238 RDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDA 297

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + + +++   ++E G  P+   FN L+S +C   +     +L  T       PD
Sbjct: 298 LCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPD 357

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            ++Y  +I G CK+ +  EA  +FN +  +   P+ V Y+++I GLCK G +  A +++ 
Sbjct: 358 VWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFS 417

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +   G  PN  TYN M+   C+I  +++A  L   M ++G      +YN LI G C   
Sbjct: 418 AIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSK 477

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R DEA +LFEEM ++ +  D +TYN LI G CK G+I
Sbjct: 478 RIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRI 514



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 154/325 (47%), Gaps = 29/325 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  N++  S+V+ + +  A+     +   G +P+  +L + I C C  G +  AF  
Sbjct: 76  PSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSV 135

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
              + + G                        ++L  + I    +++  C +G+V +  E
Sbjct: 136 LGMVLKRG------------------------YQL--NAITLTTIMKGLCINGEVRKALE 169

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
               V+  G + +   +  LI+  C+        ELLH M  +   P+   Y  +++GLC
Sbjct: 170 FHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLC 229

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K     EA  +++D+  RG  PD   YT +IHG C +G   +  ++  +M+ + +  N Y
Sbjct: 230 KDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVY 289

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYN +I   C+   L +A  +   M+++G     VT+NTL++G CL+    EA  LF+  
Sbjct: 290 TYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTF 349

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
           A+ GI  DV +YN LI GYCK  +I
Sbjct: 350 AECGITPDVWSYNILIIGYCKNNRI 374



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 159/348 (45%), Gaps = 14/348 (4%)

Query: 93  FQWLHSHYG--FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           F+ LH   G    P++V  N++ D L +      A D        G  P+  +    I  
Sbjct: 203 FELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLIHG 262

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWN--------SALLGCIKIDRTDLVWKLYH-D 198
            C  G   E       + +  V  ++ T+N          +LG     R  ++ +    D
Sbjct: 263 FCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPD 322

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           L+    L+  +C    V E  +L     E G+ P+  ++N LI  +C+         L +
Sbjct: 323 LVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFN 382

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +  AP+  TY  +I+GLCKS +   A+ +F+ + + G  P+ + Y  ++  LCK+ 
Sbjct: 383 KMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQ 442

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A +++  M  +GL PN  +YN +I+GYC+   ++EA  L +EM  +     +VTYN
Sbjct: 443 LVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYN 502

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            LI GLC  GR   A+ LF  M   G   DVITYN L   + K   ++
Sbjct: 503 CLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSKIQHVI 550



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 136/282 (48%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           I++A   F++L  M    S+  +N  L   +K+        L            ++    
Sbjct: 59  IDDAVALFTRLITMHPLPSVVEFNMILGSIVKMKHYPTAISLSKQMGLRGITPSIVTLSI 118

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +C+ G +   + +L  VL+ G          ++   C      +  E   ++VA+ 
Sbjct: 119 LINCYCHLGHMGFAFSVLGMVLKRGYQLNAITLTTIMKGLCINGEVRKALEFHDSVVAQG 178

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D  TY  +INGLCK     EA+ + + ++ +   P+ V+Y  ++ GLCK G + +AR
Sbjct: 179 FLLDEVTYGTLINGLCKIGLTREAFELLHKMEGQVVRPNVVIYNMIVDGLCKDGLVTEAR 238

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ +++ +G+ P+ +TY  +IHG+C +    E  RL  +M+D+       TYN LI  L
Sbjct: 239 DLYSDVVGRGIDPDVFTYTCLIHGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDAL 298

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G   +A+ +   M ++G   D++T+NTL+ GYC    +V
Sbjct: 299 CKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVV 340


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 60  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 119

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  K      +
Sbjct: 240 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDKI 299

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 300 TYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVD 351



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 155/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 90  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 149

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 150 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 209

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 210 DDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 269

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +   PD + YTT+I G CK G L  A +    MI + +
Sbjct: 270 IYGLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI 329

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +E  Y ++I G C+     +A+++ +EML+ G    + TY  +I   C  G   +   
Sbjct: 330 RLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSK 389

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 390 LLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 83/200 (41%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D        P+ 
Sbjct: 240 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKELKPDK 298

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +                 I++D           
Sbjct: 299 ITYTTLIDGCCKEGDLDSAFEHRKRMIQEN---------------IRLDE---------- 333

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +    LI   C +G+  +  ++LR++L  GL P++  +  +I+ FC+K +  + S+LL 
Sbjct: 334 -VAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLK 392

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 393 EMQRDGHVPSVVTYNVLMNG 412


>gi|297797161|ref|XP_002866465.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312300|gb|EFH42724.1| hypothetical protein ARALYDRAFT_496372 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 977

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 148/302 (49%), Gaps = 9/302 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + ++G  PN       I+   +     +A     +++E G+      +NS ++G  K  +
Sbjct: 446 MGASGCRPNVVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKK 505

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D       +++E+G+          I  +   G+ +   + ++++LE G++P       
Sbjct: 506 MDEARSFLLEMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTG 565

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI+ +C+K           +MV +    D  TY  ++NGL K+ K  +A  +F++++ +G
Sbjct: 566 LINEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKG 625

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             PD   Y T+I G  K+G +  A  ++ EM+  GL  N   YN ++ G+CR   +E+AK
Sbjct: 626 IAPDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAK 685

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L  EM  KG+    VTY T+I G C  G   EA+ LF+EM  KG+  D   Y TL+ G 
Sbjct: 686 ELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGC 745

Query: 420 CK 421
           C+
Sbjct: 746 CR 747



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 160/374 (42%), Gaps = 52/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  +        +EA  F  A  ++      G  PN       I   C+ G + EA
Sbjct: 520 GFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEA 579

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             AF  + E G+ G  KT+   + G +K  + +   +++H         D+   G LI  
Sbjct: 580 CSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDG 639

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + +   +  ++++ GL      +N L+  FC      +  ELL  M  +   P+
Sbjct: 640 FSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPN 699

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CKS    EA+++F+++K +G VPD+ +YTT++ G C++  +  A  + F
Sbjct: 700 AVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITI-F 758

Query: 329 EMIHKGLL---------------------------------------PNEYTYNSMIHGY 349
           E   KG                                         PN+ TYN MI   
Sbjct: 759 ETNEKGCASSSAPFNALINWVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYL 818

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+  NLE AK L   M       T +TY +L+ G    GR  E + +F+E+   GI  D 
Sbjct: 819 CKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDN 878

Query: 410 ITYNTLIQGYCKEG 423
           I Y+ +I  + KEG
Sbjct: 879 IMYSVIINAFLKEG 892



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 150/302 (49%), Gaps = 15/302 (4%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLGCIKIDRTDLVW 193
           +P +    ++ +C SG ++ A+   + +KEMG  G   ++  + + +   ++  R     
Sbjct: 419 SPYTYGTAVKGMCSSGDLDGAY---NIVKEMGASGCRPNVVIYTTLIKTFLQKSRFGDAV 475

Query: 194 KLYHDLIESGYLIQAFCNDG---------KVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++  ++ E G     FC +          K+ E    L +++E+G  P+   +   IS +
Sbjct: 476 RVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFISGY 535

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
            E   F    + +  M+     P+      +IN  CK  K +EA   F  + E+G + D 
Sbjct: 536 IEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKGKVIEACSAFRSMVEQGILGDA 595

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             YT +++GL K G + DA +++ EM  KG+ P+ ++Y ++I G+ ++ N+++A  +  E
Sbjct: 596 KTYTVLMNGLVKNGKVNDAEEIFHEMRGKGIAPDVFSYGTLIDGFSKLGNMQKASSIFDE 655

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M+  G     + YN L+ G C  G  ++A  L +EM+ KG   + +TY T+I GYCK G 
Sbjct: 656 MVQAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGD 715

Query: 425 IV 426
           + 
Sbjct: 716 LA 717



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 139/303 (45%), Gaps = 9/303 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  S  L I  LC+   +E+A     ++  +G+F     ++  + G +K    D  
Sbjct: 275 GLVPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAA 334

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L H+++  G         Y I     +G + +   L   ++  G+ P   A+  LI  
Sbjct: 335 NGLVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEG 394

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           F  +KN  +  ELL  +  RN     +TY   + G+C S     AY +  ++   G  P+
Sbjct: 395 FFREKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPN 454

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V+YTT+I    +    GDA ++  EM  +G+ P+ + YNS+I G  +   ++EA+    
Sbjct: 455 VVIYTTLIKTFLQKSRFGDAVRVLKEMREQGIAPDTFCYNSLIIGLSKAKKMDEARSFLL 514

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM++ G+     TY   I+G    G    A    +EM + G+  + +    LI  YCK+G
Sbjct: 515 EMVENGFKPDAFTYGAFISGYIEAGEFASADKYVKEMLECGVIPNKVLCTGLINEYCKKG 574

Query: 424 KIV 426
           K++
Sbjct: 575 KVI 577



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 146/339 (43%), Gaps = 31/339 (9%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           ++R  + +    G +PD    N L   L +A+    A  FL      GF P+  +   +I
Sbjct: 474 AVRVLKEMREQ-GIAPDTFCYNSLIIGLSKAKKMDEARSFLLEMVENGFKPDAFTYGAFI 532

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
                SG IE            G F S   +   +L C  I    L   L          
Sbjct: 533 -----SGYIEA-----------GEFASADKYVKEMLECGVIPNKVLCTGL---------- 566

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C  GKV E     R ++E G++ +   +  L++   +        E+ H M  +  
Sbjct: 567 INEYCKKGKVIEACSAFRSMVEQGILGDAKTYTVLMNGLVKNGKVNDAEEIFHEMRGKGI 626

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           APD F+Y  +I+G  K     +A  +F+++ + G   + ++Y  ++ G C+ G +  A++
Sbjct: 627 APDVFSYGTLIDGFSKLGNMQKASSIFDEMVQAGLTSNVIIYNMLLGGFCRSGEIEKAKE 686

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM  KG  PN  TY ++I GYC+  +L EA +L  EM  KG    +  Y TL+ G C
Sbjct: 687 LLDEMSGKGFPPNAVTYCTIIDGYCKSGDLAEAFQLFDEMKLKGLVPDSFVYTTLVDGCC 746

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                + A  +F E  +KG       +N LI    K GK
Sbjct: 747 RLNDVERAITIF-ETNEKGCASSSAPFNALINWVFKFGK 784



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 138/314 (43%), Gaps = 32/314 (10%)

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGV--FGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           + I    E G ++EA   FS  K++ +    S+   N  L   +K +R DL W +Y  ++
Sbjct: 157 ILIDGYIEKGFLDEAVFVFSSTKDLDLDLVPSLARCNHLLDALLKRNRLDLFWDVYKGMV 216

Query: 201 ESGY---------LIQAFCNDGKV---------------------SEGYELLRQVLEDGL 230
           E            LI A C DG V                      E  EL + +   GL
Sbjct: 217 ERNVVFDVQSYEMLIGAHCRDGNVQLAKDVLLKTEEELGTATLNVDEALELKKSMSCKGL 276

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           VP   ++N LI   C++K       LL  M +     DN  Y  +I+GL K R    A  
Sbjct: 277 VPSRQSYNLLIDGLCKQKRLEDAKSLLVEMNSVGLFADNVAYSILIDGLLKGRNADAANG 336

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           + +++   G+  D +MY   I  + K G +  A+ ++  MI  G+ P    Y S+I G+ 
Sbjct: 337 LVHEMVSHGFSIDPMMYDYFICVMSKEGAMEKAKALFDGMITFGVTPGARAYASLIEGFF 396

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R  N+ +   L  E+  +    +  TY T + G+C  G  D AY++ +EM   G   +V+
Sbjct: 397 REKNVRKGYELLVEIKKRNIVISPYTYGTAVKGMCSSGDLDGAYNIVKEMGASGCRPNVV 456

Query: 411 TYNTLIQGYCKEGK 424
            Y TLI+ + ++ +
Sbjct: 457 IYTTLIKTFLQKSR 470



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/309 (22%), Positives = 132/309 (42%), Gaps = 20/309 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
             G + +++  N+L      +   + A + LD     GF PN  +    I   C+SG + 
Sbjct: 658 QAGLTSNVIIYNMLLGGFCRSGEIEKAKELLDEMSGKGFPPNAVTYCTIIDGYCKSGDLA 717

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----DLIESGYLIQAFCN 211
           EAF  F ++K  G+      + + + GC +++  +    ++         S     A  N
Sbjct: 718 EAFQLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFETNEKGCASSSAPFNALIN 777

Query: 212 ----DGKVSEGYELLRQVLEDGL----VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
                GK     +++ ++++        P +  +N +I   C++ N     EL H M   
Sbjct: 778 WVFKFGKTELTTDMINRLMDGSFDKFGKPNDVTYNIMIDYLCKEGNLEAAKELFHHMQKA 837

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N  P   TY  ++NG  K  +R E + VF+++   G  PD +MY+ +I+   K G    A
Sbjct: 838 NLMPTVITYTSLLNGYDKMGRRSEMFSVFDEVIAAGIEPDNIMYSVIINAFLKEGMTTKA 897

Query: 324 RKMWFEMIHKGLLPNE-----YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
             +  +M  K  + +       T  +++ G+ ++  +E A+++ + M+   Y   + T  
Sbjct: 898 LVLLDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVVENMVRLKYIPDSSTVI 957

Query: 379 TLIAGLCLH 387
            LI   C+ 
Sbjct: 958 ELINESCIS 966



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I  LC+ G +E A   F  +++  +  ++ T+ S L G  K+ R   ++ +
Sbjct: 806 PNDVTYNIMIDYLCKEGNLEAAKELFHHMQKANLMPTVITYTSLLNGYDKMGRRSEMFSV 865

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQV-----LEDGLVPENTAFNKLI 241
           + ++I +G          +I AF  +G  ++   LL Q+     ++DG     +    L+
Sbjct: 866 FDEVIAAGIEPDNIMYSVIINAFLKEGMTTKALVLLDQMFAKNAVDDGCKLSISTCRALL 925

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC-KSRKRLEA 288
           S F +        +++  MV     PD+ T  E+IN  C  S +R+ A
Sbjct: 926 SGFAKVGEMEVAEKVVENMVRLKYIPDSSTVIELINESCISSNQRMAA 973


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 170/360 (47%), Gaps = 30/360 (8%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLE 142
           +N+  L + FF+W  +     P L +  ++      ++  K+A   +     +PN +   
Sbjct: 105 KNDYRLVLSFFEW--ACLRRDPSLEARCIVAQIATASKDLKMARKLIQDFWVNPNLDVGV 162

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN------SALLGCIKID-RTDLVWKL 195
            + + L            F K+   G+  S+ + N      S  L  IKI  + + V KL
Sbjct: 163 SFARKL------------FDKMLNYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKL 210

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             ++   G          +I   C  GKV+E   +LR+++ +G+ P+   +  LI  FC+
Sbjct: 211 IEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCK 270

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             N      L   M  R  +PD  TY  VI GLC++ + +EA ++F+++  +   PD V 
Sbjct: 271 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 330

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YT +I G CK G + +A  +  +M+  GL PN  TY ++  G C+   ++ A  L  EM 
Sbjct: 331 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 390

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            KG      TYN+L+ GLC  G  D+A  L ++M   G   D +TY TL+  YCK  ++V
Sbjct: 391 RKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMV 450



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 9/300 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G +P+       I   C+ G +  A+  F ++++  +     T+ + + G  +  R  
Sbjct: 251 SEGIAPDGVIYTTLIDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVM 310

Query: 191 LVWKLYHDLI-------ESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              KL+H+++       E  Y  LI  +C +GK+ E + L  Q+L+ GL P    +  L 
Sbjct: 311 EADKLFHEMVCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALA 370

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+       +ELLH M  +    + +TY  ++NGLCK+    +A ++  D++  G+ 
Sbjct: 371 DGLCKCGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFH 430

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD V YTT++   CK   +  A ++  +M+ + L P   T+N +++G+C    LE+ ++L
Sbjct: 431 PDAVTYTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKL 490

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            K ML+KG      TYN+LI   C+         ++  M  KG+  D  TYN LI+G+CK
Sbjct: 491 LKWMLEKGIMPNATTYNSLIKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCK 550



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 151/337 (44%), Gaps = 36/337 (10%)

Query: 99  HYGFSPDLVSCNVLFDSLVE-ARAFKVAM---------DFLDSTGFSPNPNSLELYIQCL 148
           +YG    + SCN+    L E     K+A+         + +   G  PNP +    I  L
Sbjct: 174 NYGLLISVDSCNLFISHLSEDLDGIKIALKGEWVLKLIEEMQIKGLKPNPYTYNGVILLL 233

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C++G + EA     ++   G+      + +                          LI  
Sbjct: 234 CKTGKVAEAERVLREMISEGIAPDGVIYTT--------------------------LIDG 267

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G VS  Y L  ++ +  + P+   +  +I   C+        +L H MV +   PD
Sbjct: 268 FCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPD 327

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  K  EA+ + N + + G  P+ V YT +  GLCK G +  A ++  
Sbjct: 328 EVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLH 387

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL  N YTYNS+++G C+  N+++A +L K+M   G+    VTY TL+   C   
Sbjct: 388 EMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSR 447

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               A+ L  +M  + +   V+T+N L+ G+C  G +
Sbjct: 448 EMVRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGML 484



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 163/353 (46%), Gaps = 13/353 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNPNSL 141
           NV  + R F  +      SPD ++   +   L +  R  +    F  +      P+  + 
Sbjct: 273 NVSSAYRLFDEMQKR-KISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTY 331

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
              I   C+ G ++EAF   +++ +MG+  +I T+ +   G  K    D   +L H++  
Sbjct: 332 TALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCR 391

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          L+   C  G + +  +L++ +   G  P+   +  L+  +C+ +   R
Sbjct: 392 KGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVR 451

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             ELL  M+ R   P   T+  ++NG C S    +  ++   + E+G +P+   Y ++I 
Sbjct: 452 AHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSLIK 511

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C    +    +++  M  KG++P+  TYN +I G+C+  N++EA  LH++M+ KG+  
Sbjct: 512 QYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNL 571

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T  +YN LI G     +  EA  LFE+M ++G+  D   YN        EGK+
Sbjct: 572 TVSSYNALIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFADINYDEGKM 624


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 166/339 (48%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
            +GFSP++V    L D   +    + A D    +   G   N  +  + I  L ++G+ +
Sbjct: 191 EFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKK 250

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           + F  + K++E GVF ++ T+N  +    K  RT   +K++ ++ E G          LI
Sbjct: 251 QGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLI 310

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C + K +E  +++ Q+    + P    +N LI  FC     G+   L   + +R  +
Sbjct: 311 GGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLS 370

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY  +++G C+      A ++  +++ERG  P  V YT +I    +   +  A ++
Sbjct: 371 PSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQL 430

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M   GL+P+ +TY+ +IHG+C    + EA RL K M++K      V YNT+I G C 
Sbjct: 431 RSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMILGYCK 490

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G +  A  LF +M +K +  +V +Y+ LI+  CKE K+
Sbjct: 491 EGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKL 529



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 153/320 (47%), Gaps = 19/320 (5%)

Query: 113 FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
           FD LVE R F          GFSPN       I   C+ G IE+A   F ++ + G+  +
Sbjct: 183 FDLLVELREF----------GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKFGLVAN 232

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
             T+   + G  K       +++Y  + E G          ++   C DG+  + +++  
Sbjct: 233 EWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFD 292

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++ E G+      +N LI   C +      ++++  M +    P+  TY  +I+G C   
Sbjct: 293 EMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVG 352

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K  +A  +  DLK RG  P  V Y  ++ G C+ G    A KM  EM  +G+ P++ TY 
Sbjct: 353 KLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYT 412

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            +I  + R DN+E A +L   M + G      TY+ LI G C+ G+ +EA  LF+ M +K
Sbjct: 413 ILIDTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK 472

Query: 404 GIFRDVITYNTLIQGYCKEG 423
            +  + + YNT+I GYCKEG
Sbjct: 473 MLEPNEVIYNTMILGYCKEG 492



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 10/303 (3%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LF + ++ + F++  + +   G  PN  +    +  LC+ G  ++AF  F +++E GV  
Sbjct: 243 LFKNGIKKQGFEM-YEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 172 SIKTWNSALLGC---IKIDRTDLV------WKLYHDLIESGYLIQAFCNDGKVSEGYELL 222
           +I T+N+ + G    +K +  + V      + +  +LI    LI  FC+ GK+ +   L 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLC 361

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           R +   GL P    +N L+S FC K +    ++++  M  R   P   TY  +I+   +S
Sbjct: 362 RDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARS 421

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
                A ++ + ++E G VPD   Y+ +IHG C  G + +A +++  M+ K L PNE  Y
Sbjct: 422 DNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIY 481

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N+MI GYC+  +   A RL ++M +K       +Y+ LI  LC   +  EA  L E+M  
Sbjct: 482 NTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMID 541

Query: 403 KGI 405
            GI
Sbjct: 542 SGI 544



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 141/290 (48%), Gaps = 8/290 (2%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW-------- 193
           E+ I    +S  ++ +   F+++ + G       +N+ L   +     +  W        
Sbjct: 98  EVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKI 157

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           K+  D+   G +I+  C  G++ + ++LL ++ E G  P    +  LI   C+K    + 
Sbjct: 158 KVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKA 217

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +L   M       + +TY  +I+GL K+  + + + ++  ++E G  P+   Y  V++ 
Sbjct: 218 KDLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQ 277

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G   DA K++ EM  +G+  N  TYN++I G CR     EA ++  +M        
Sbjct: 278 LCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPN 337

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +TYNTLI G C  G+  +A  L  ++  +G+   ++TYN L+ G+C++G
Sbjct: 338 LITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKG 387



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/220 (29%), Positives = 123/220 (55%), Gaps = 1/220 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I A+     +        ++++ G VP +  FN L++      +F +     +    + 
Sbjct: 100 IINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESKIK- 158

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D +++  VI G C++ +  +++ +  +L+E G+ P+ V+YTT+I G CK G +  A+
Sbjct: 159 VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAK 218

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++FEM   GL+ NE+TY  +IHG  +    ++   ++++M + G      TYN ++  L
Sbjct: 219 DLFFEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQL 278

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           C  GRT +A+ +F+EM ++G+  +++TYNTLI G C+E K
Sbjct: 279 CKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMK 318



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 137/308 (44%), Gaps = 20/308 (6%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLD 130
            F+  +K+Q         ++ +  H G  P+L + N + + L +      AFKV  D + 
Sbjct: 243 LFKNGIKKQ-----GFEMYEKMQEH-GVFPNLYTYNCVMNQLCKDGRTKDAFKV-FDEMR 295

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
             G S N  +    I  LC      EA     ++K   +  ++ T+N+ + G   + +  
Sbjct: 296 ERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLG 355

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
               L  DL   G          L+  FC  G  S   ++++++ E G+ P    +  LI
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             F    N     +L  +M      PD  TY  +I+G C   +  EA R+F  + E+   
Sbjct: 416 DTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLE 475

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+ V+Y T+I G CK G    A +++ +M  K L PN  +Y+ +I   C+   L+EA+ L
Sbjct: 476 PNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDL 535

Query: 362 HKEMLDKG 369
            ++M+D G
Sbjct: 536 VEKMIDSG 543


>gi|414875533|tpg|DAA52664.1| TPA: hypothetical protein ZEAMMB73_493958 [Zea mays]
          Length = 688

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 162/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N +   L+++    A +V    + + G  P+  +    +   C++G ++EA
Sbjct: 305 GIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEA 364

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F  L+  G+  ++ T+N  + G  ++   +    L  ++ E G          L++ 
Sbjct: 365 LLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKG 424

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             N   ++   E   ++L  GL P+  A+N  I       +  R  EL   ++    + D
Sbjct: 425 SLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALELREVLMLEGISSD 484

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+    +A  +   +   G  PD + YT +IH  C+ G L +ARK++ 
Sbjct: 485 TVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFN 544

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI  GLLP+  T+  +IH YCR  NL  A    ++ML++G     +TYN LI  LC  G
Sbjct: 545 NMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMG 604

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           RT  A H F EM ++G+  +  TY  LI G CK G
Sbjct: 605 RTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVG 639



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 154/331 (46%), Gaps = 12/331 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L +   +A   K A+     L   G +P   +  + I   C  G +EEA
Sbjct: 340 GLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEA 399

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND----- 212
                ++ E G   ++ T+   + G + +    +  + + +++  G     F  +     
Sbjct: 400 RILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICA 459

Query: 213 ----GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G ++   EL   ++ +G+  +   +N LI   C+  N     EL   MV+    PD
Sbjct: 460 ELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPD 519

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C+     EA ++FN++   G +P  V +T +IH  C+ G L  A   + 
Sbjct: 520 CITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFR 579

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G+ PNE TYN +IH  CR+   + A     EML++G      TY  LI G C  G
Sbjct: 580 KMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVG 639

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             ++A   + EM Q GI  D +T+  L++G+
Sbjct: 640 NWEDAMRFYFEMHQNGIHPDYLTHKALVKGF 670



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 143/327 (43%), Gaps = 12/327 (3%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N L   L+     K   D    +++ G  P   +    I  L +SGL+E A   F++++ 
Sbjct: 279 NPLITGLLARGCVKKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRA 338

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKVSE 217
           MG+   + T+NS L G  K         L+ DL  +G           I  +C  G + E
Sbjct: 339 MGLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEE 398

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L  ++ E G +P    +  L+       +     E    M+++   PD F Y   I 
Sbjct: 399 ARILKEEMGEQGCLPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRIC 458

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                     A  +   L   G   DTV Y  +IHGLCK G L DA+++  +M+  GL P
Sbjct: 459 AELILGDIARALELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQP 518

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  +IH +C    L EA+++   M+  G   + VT+  +I   C  G    AY  F
Sbjct: 519 DCITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWF 578

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +M ++G+  + ITYN LI   C+ G+
Sbjct: 579 RKMLEEGVEPNEITYNVLIHALCRMGR 605



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 139/330 (42%), Gaps = 32/330 (9%)

Query: 101 GFSPDLVSCNVLFDS-LVEARAFKVAMDFLD----STGFSPNPNSLELYIQCLCESGLIE 155
           G  P +V+ N L DS L E R  KVAM   +     +G  PN  +  + I  L   G +E
Sbjct: 199 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 258

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EA      ++ +    S  T+N                           LI      G V
Sbjct: 259 EAAELVEGMR-LSKKASSFTYNP--------------------------LITGLLARGCV 291

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            + Y+L  ++  +G++P    +N +I    +             M A    PD  TY  +
Sbjct: 292 KKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSL 351

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           +NG CK+    EA  +F DL+  G  P  + Y   I G C++G L +AR +  EM  +G 
Sbjct: 352 LNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNIRIDGYCRLGDLEEARILKEEMGEQGC 411

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           LPN  TY  ++ G   + +L  A+    EML KG       YNT I    + G    A  
Sbjct: 412 LPNVCTYTILMKGSLNVCSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARALE 471

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L E +  +GI  D +TYN LI G CK G +
Sbjct: 472 LREVLMLEGISSDTVTYNILIHGLCKTGNL 501


>gi|414882130|tpg|DAA59261.1| TPA: hypothetical protein ZEAMMB73_845952 [Zea mays]
          Length = 1603

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 162/335 (48%), Gaps = 12/335 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  P +V+ N +   L+++    A +V    + + G  P+  +    +   C++G ++EA
Sbjct: 1220 GIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGNLKEA 1279

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               F  L+  G+  ++ T+N  + G  ++   +    L  ++ E G          L++ 
Sbjct: 1280 LLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTILMKG 1339

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              N   ++   E   ++L  GL P+  A+N  I       +  R  EL   ++    + D
Sbjct: 1340 SLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEGISSD 1399

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +I+GLCK+    +A  +   +   G  PD + YT +IH  C+ G L +ARK++ 
Sbjct: 1400 TVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREARKIFN 1459

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             MI  GLLP+  T+  +IH YCR  NL  A    ++ML++G     +TYN LI  LC  G
Sbjct: 1460 NMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMG 1519

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            RT  A H F EM ++G+  +  TY  LI G CK G
Sbjct: 1520 RTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVG 1554



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 155/331 (46%), Gaps = 12/331 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  PD+++ N L +   +A   K A+     L   G +P   +  + I   C  G +EEA
Sbjct: 1255 GLLPDVITYNSLLNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEA 1314

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND----- 212
                 ++ E G   ++ T+   + G + +    +  + + +++  G     F  +     
Sbjct: 1315 RILKEEMGEQGCLPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICA 1374

Query: 213  ----GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                G ++  +EL   ++ +G+  +   +N LI   C+  N     EL   MV+    PD
Sbjct: 1375 ELILGDIARAFELREVLMLEGISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPD 1434

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +I+  C+     EA ++FN++   G +P  V +T +IH  C+ G L  A   + 
Sbjct: 1435 CITYTCLIHAHCERGLLREARKIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFR 1494

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +M+ +G+ PNE TYN +IH  CR+   + A     EML++G      TY  LI G C  G
Sbjct: 1495 KMLEEGVEPNEITYNVLIHALCRMGRTQLASHHFHEMLERGLVANKYTYTLLIDGNCKVG 1554

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
              ++A   + EM Q GI  D +T+  L++G+
Sbjct: 1555 NWEDAMRFYFEMHQNGIHPDYLTHKALLKGF 1585



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/305 (28%), Positives = 140/305 (45%), Gaps = 9/305 (2%)

Query: 129  LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
            +++ G  P   +    I  L +SGL+E A   F++++ MG+   + T+NS L G  K   
Sbjct: 1216 MENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSLLNGYCKAGN 1275

Query: 189  TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                  L+ DL  +G          LI  +C  G + E   L  ++ E G +P    +  
Sbjct: 1276 LKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGCLPNVCTYTI 1335

Query: 240  LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
            L+      ++     E    M+++   PD F Y   I           A+ +   L   G
Sbjct: 1336 LMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFELREVLMLEG 1395

Query: 300  YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
               DTV Y  +IHGLCK G L DA+++  +M+  GL P+  TY  +IH +C    L EA+
Sbjct: 1396 ISSDTVTYNILIHGLCKTGNLKDAKELQMKMVSNGLQPDCITYTCLIHAHCERGLLREAR 1455

Query: 360  RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            ++   M+  G   + VT+  +I   C  G    AY  F +M ++G+  + ITYN LI   
Sbjct: 1456 KIFNNMISDGLLPSAVTFTVIIHAYCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHAL 1515

Query: 420  CKEGK 424
            C+ G+
Sbjct: 1516 CRMGR 1520



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/330 (29%), Positives = 141/330 (42%), Gaps = 32/330 (9%)

Query: 101  GFSPDLVSCNVLFDS-LVEARAFKVAMDFLD----STGFSPNPNSLELYIQCLCESGLIE 155
            G  P +V+ N L DS L E R  KVAM   +     +G  PN  +  + I  L   G +E
Sbjct: 1114 GIEPSIVTYNTLLDSFLKEGRKDKVAMLLKEMETRGSGCLPNDVTYNVVITGLTRKGDLE 1173

Query: 156  EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
            EA      ++ +    S  T+N                           LI      G V
Sbjct: 1174 EAAELVEGMR-LSKKASSFTYNP--------------------------LITGLLARGCV 1206

Query: 216  SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
             + Y+L  ++  +G++P    +N +I    +             M A    PD  TY  +
Sbjct: 1207 KKVYDLQLEMENEGIMPTVVTYNAMIHGLLQSGLVEAAQVKFAEMRAMGLLPDVITYNSL 1266

Query: 276  INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
            +NG CK+    EA  +F DL+  G  P  + Y  +I G C++G L +AR +  EM  +G 
Sbjct: 1267 LNGYCKAGNLKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEARILKEEMGEQGC 1326

Query: 336  LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            LPN  TY  ++ G   + +L  A+    EML KG       YNT I    + G    A+ 
Sbjct: 1327 LPNVCTYTILMKGSLNVRSLAMAREFFDEMLSKGLQPDCFAYNTRICAELILGDIARAFE 1386

Query: 396  LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L E +  +GI  D +TYN LI G CK G +
Sbjct: 1387 LREVLMLEGISSDTVTYNILIHGLCKTGNL 1416


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/338 (30%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+   +VLF    +    ++  K+ +D + S G  PN     +YI+ LC    +EE
Sbjct: 228 GLVPDVHIYSVLFQCCFKQGFPSKKEKL-LDEMTSLGVKPNVYIYTIYIRDLCRENKMEE 286

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQ 207
           A   F  +K  GV  ++ T+++ + G  K       + LY +++ +         G L+ 
Sbjct: 287 AEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVD 346

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC   ++     L   +++ G+ P    +N LI   C+  N      LL  M + N +P
Sbjct: 347 GFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSP 406

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FTY  +INGLC   +  EA R+F  +K     P +V Y ++IHG CK   +  A  + 
Sbjct: 407 DVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLC 466

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G+ PN  T++++I GYC++ N++ A  L+ EM  KG     VTY TLI      
Sbjct: 467 SEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKE 526

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               EA  L+ +M + GI  +  T+  L+ G+ KEG++
Sbjct: 527 ANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRL 564



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 163/343 (47%), Gaps = 12/343 (3%)

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCES 151
           W+      SPD  +C  + + LV  R F    V    + S G  P+ +   +  QC  + 
Sbjct: 187 WVSREMRCSPDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQ 246

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY-----HDLIESGY-- 204
           G   +      ++  +GV  ++  +   +    + ++ +   K++     H ++ + Y  
Sbjct: 247 GFPSKKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTY 306

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I  +C  G + + Y L +++L   L+P    F  L+  FC+ +       L   MV 
Sbjct: 307 SAMIDGYCKTGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVK 366

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               P+ + Y  +I+G CKS   LEA  + ++++     PD   YT +I+GLC    L +
Sbjct: 367 FGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERLAE 426

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++  M ++ + P+  TYNS+IHG+C+  N+E+A  L  EM   G     +T++TLI 
Sbjct: 427 ANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLID 486

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C       A  L+ EM  KGI  DV+TY TLI  + KE  +
Sbjct: 487 GYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANM 529



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/195 (29%), Positives = 95/195 (48%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P++ A   +++    ++ F  V      M++R   PD   Y  +     K     +  ++
Sbjct: 196 PDSKACLAILNGLVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKL 255

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            +++   G  P+  +YT  I  LC+   + +A KM+  M   G++PN YTY++MI GYC+
Sbjct: 256 LDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCK 315

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             NL +A  L+KE+L        V + TL+ G C       A  LF  M + G+  ++  
Sbjct: 316 TGNLRQAYGLYKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYV 375

Query: 412 YNTLIQGYCKEGKIV 426
           YN LI G CK G ++
Sbjct: 376 YNCLIHGQCKSGNML 390



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 59/207 (28%), Positives = 98/207 (47%), Gaps = 5/207 (2%)

Query: 222 LRQVLEDGLVPENT--AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           L   LED   P+ +   F+ LI  F E    G   + L        +PD+     ++NGL
Sbjct: 152 LFNALEDIQSPKFSIGVFSLLIMEFLE---MGLFEDALWVSREMRCSPDSKACLAILNGL 208

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            + R+    +  +  +  RG VPD  +Y+ +     K G+     K+  EM   G+ PN 
Sbjct: 209 VRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPSKKEKLLDEMTSLGVKPNV 268

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           Y Y   I   CR + +EEA+++ + M   G      TY+ +I G C  G   +AY L++E
Sbjct: 269 YIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGLYKE 328

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +    +  +V+ + TL+ G+CK  ++V
Sbjct: 329 ILVAELLPNVVVFGTLVDGFCKARELV 355



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 111/260 (42%), Gaps = 26/260 (10%)

Query: 102 FSPDLVSCNVLFDSL-VEARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+ +  +L + L  E R  +    F  + +    P+  +    I   C+   IE+A 
Sbjct: 404 LSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKAL 463

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
              S++   GV  +I T+++ + G  K+        LY ++   G          LI A 
Sbjct: 464 DLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAH 523

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
             +  + E   L   +LE G+ P +  F  L+  F ++   GR+S+ +   +  N+A   
Sbjct: 524 FKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKE---GRLSDAIDFYLENNQAATG 580

Query: 270 FTYEE-----------VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +           +I GLC++   L A R F+D+K  G  PD   Y +++    +  
Sbjct: 581 KSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREK 640

Query: 319 WLGDARKMWFEMIHKGLLPN 338
            + D   +  +MI  G+LPN
Sbjct: 641 RITDTMMLHCDMIKTGILPN 660


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 168/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G SPD    N++F++  +      AM   D       SP   +    I  LC+ G +++A
Sbjct: 337 GVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDA 396

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA--------- 208
              F+++   GV   I  ++S + G   +D+ +   KL+ ++++ G  + A         
Sbjct: 397 VLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCN 456

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V E   L+  +L   + P+  ++N L+   C        ++LL  MV+    PD
Sbjct: 457 LCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPD 516

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +++G CK+R+  +AY +F ++  +G  P  V Y T++HGL ++G   +A++++ 
Sbjct: 517 EFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYL 576

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI+     + YTY  +++G CR + ++EA ++ + +  K       T N +I  L   G
Sbjct: 577 NMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGG 636

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  LF  ++  G+  DV TY  + +   KEG +
Sbjct: 637 RKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSL 673



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/421 (23%), Positives = 195/421 (46%), Gaps = 18/421 (4%)

Query: 23  NTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK- 81
           N  +R  S++   S   YT +    C++ R K  +    L     ++ N+ + F + LK 
Sbjct: 78  NRMIRECSVKVAPSSCTYTILIGCFCRMGRLKHGFAAFGLILKTGWSLNNTVIFGQLLKG 137

Query: 82  --QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTG- 133
                 V  +          +G + +++S N+L   L   +  + A++ +     D  G 
Sbjct: 138 LCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKGLCNEKRAEEALELMHMMADDGDGS 197

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            +PN  +    I  LC++ +++ A   F  + + GV  +  T+   + G +   +   V 
Sbjct: 198 HTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSTGKWKEVV 257

Query: 194 KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++  ++   G          L+   C +G+ +E   +   ++  G+ P  T +  L+  +
Sbjct: 258 QMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGY 317

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
             +     +   L  MV    +PD+  +  + N   K     EA  +F+ ++++   P  
Sbjct: 318 ATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQWLSPGV 377

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V Y  +I  LCK+G + DA   + +MI++G+ P+ + ++S+++G C +D  E+A++L  E
Sbjct: 378 VNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFE 437

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +LD+G       +N L+  LC  GR  EA  L + M +  +  DVI+YNTL+ G+C  G+
Sbjct: 438 VLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGR 497

Query: 425 I 425
           I
Sbjct: 498 I 498



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 71/352 (20%), Positives = 145/352 (41%), Gaps = 49/352 (13%)

Query: 124 VAMDFLDSTGFSPNPNSL-ELYIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALL 181
            A   +  TG+S N   +    ++ LC++  ++EA      ++ E G   ++ ++N  L 
Sbjct: 113 AAFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLK 172

Query: 182 GCIKIDRTDLVWKLYHDLIESG------------YLIQAFCNDGKVSEGYELLRQVLEDG 229
           G     R +   +L H + + G             +I   C    V     + + +++ G
Sbjct: 173 GLCNEKRAEEALELMHMMADDGDGSHTPNVVTYTTVIDGLCKAQMVDRAKGVFQHMIDKG 232

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           + P N  +  LI  +     +  V ++L  M      PD   Y  +++ LCK+ +  EA 
Sbjct: 233 VRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCTEAR 292

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F+ L  +G  P   +Y  ++HG    G L +       M+  G+ P+ + +N M + Y
Sbjct: 293 NIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIMFNAY 352

Query: 350 -----------------------------------CRIDNLEEAKRLHKEMLDKGYGETT 374
                                              C++  +++A     +M+++G     
Sbjct: 353 AKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDI 412

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +++L+ GLC   + ++A  LF E+  +GI  +   +N L+   C+EG+++
Sbjct: 413 FVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFNILMCNLCREGRVM 464



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 146/355 (41%), Gaps = 36/355 (10%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEA--------RAFKVAMDFLDSTGFSPNPNSL 141
           ++F Q ++   G +PD+     +F SLV          +A K+  + LD  G   N    
Sbjct: 398 LKFNQMINE--GVTPDIF----VFSSLVYGLCTVDKWEKAEKLFFEVLDQ-GIRLNAAFF 450

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + +  LC  G + EA      +  + V   + ++N+ + G     R D   KL   ++ 
Sbjct: 451 NILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVS 510

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL------ISRFCE 246
            G          L+  +C   ++ + Y L R++L  GL P    +N +      I RFCE
Sbjct: 511 IGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCE 570

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            K      EL   M+   R  D +TY  ++NGLC++    EA+++F  L  +    D   
Sbjct: 571 AK------ELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFT 624

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
              +I  L K G   DA  ++  +   GL+P+  TY  +     +  +LEE   L   M 
Sbjct: 625 INIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAME 684

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           + G    +   N L+  L   G    A     ++ +K    +  T + LI  Y +
Sbjct: 685 ENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKNFSLEASTTSMLISIYSR 739



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 59/270 (21%), Positives = 113/270 (41%), Gaps = 12/270 (4%)

Query: 104 PDLVSCNVLFDS-LVEARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD++S N L D   +  R  + A  +D + S G  P+  +    +   C++  I++A+  
Sbjct: 480 PDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSL 539

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
           F ++   G+   + T+N+ L G  +I R     +LY ++I +           ++   C 
Sbjct: 540 FREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCR 599

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +  V E +++ + +    L  +    N +I    +        +L  T+ A    PD  T
Sbjct: 600 NNFVDEAFKMFQSLCSKDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVET 659

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +   L K     E   +F+ ++E G  P++ M   ++  L   G +G A     ++ 
Sbjct: 660 YRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLD 719

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
            K       T + +I  Y R +  + AK L
Sbjct: 720 EKNFSLEASTTSMLISIYSRAEYQQLAKSL 749


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 163/329 (49%), Gaps = 20/329 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F++++EA+  + +    D   FS         I    ESG + +A   F   +E 
Sbjct: 47  SASAVFEAILEAKGAQRS----DVYVFSG-------LITAYLESGFLHDALECFRLTREH 95

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
             +    T    L   +K+    LVW  Y +++E GY         L+  FC +G++   
Sbjct: 96  KFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLA 155

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +  ++ + GL P   +FN L++ +    +      L   M A    PD +TY  +ING
Sbjct: 156 QSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLING 215

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A  +F ++   G VP+ V +TT+I G CK G +  A + + EM+ +G  P+
Sbjct: 216 LCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPD 275

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+  +L++A+ L  EM  KG     +TY TLI G C  G  + A +  +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRK 335

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCREGQSVD 364



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/316 (25%), Positives = 144/316 (45%), Gaps = 12/316 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + +  ++ + FK+   F         P SL  +   +   C+ G +  A   F ++
Sbjct: 103 TCRKVLEHFMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C + K+
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 222

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           ++  EL  +++ +GLVP    F  LI   C+  +     E    M+ +  +PD  TY  +
Sbjct: 223 NDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTL 282

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A      MI + +
Sbjct: 283 IYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENI 342

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G CR     +A+++ +EML  G      TY  +I   C  G       
Sbjct: 343 RLDDVAYTALISGLCREGQSVDAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSK 402

Query: 396 LFEEMAQKGIFRDVIT 411
           L +EM + G    V+T
Sbjct: 403 LLKEMQRDGHVPCVVT 418



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/170 (25%), Positives = 72/170 (42%), Gaps = 29/170 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GFSPDL++ N L   L +    K A D +D     G  P+  +    I   C+ G +E A
Sbjct: 271 GFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++ +                 I++D  D+ +           LI   C +G+  +
Sbjct: 331 LYYRKRMIKEN---------------IRLD--DVAYTA---------LISGLCREGQSVD 364

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             ++LR++L  GL P+N  +  +I+ FC+K +    S+LL  M      P
Sbjct: 365 AEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVP 414


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 77  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWXFYKEILECGY 136

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G +     +   + + GL P   +FN L++ +    +      
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 196

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 197 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 256

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 257 KNGRVDLAMEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDKI 316

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +Y TLI G C  G  + A+   + M Q+ I  D + Y  LI G C+EG+ ++
Sbjct: 317 SYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSID 368



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 153/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F         P SL  +   +   C+ G I  A   F  +
Sbjct: 107 TCRKVLEHLMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAI 166

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C + K+
Sbjct: 167 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 226

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L+ GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 227 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTL 286

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A  + ++++ +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 287 IYGLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENI 346

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G       
Sbjct: 347 RLDDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSK 406

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 407 LLKEMQRDGHVPSVVTYNVLMNG 429



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 85/200 (42%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A D +D     G  P+ 
Sbjct: 257 KNGRVDLAMEVYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKGLKPDK 315

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S    I   C+ G +E AF    ++ +                 I++D  D+ +     
Sbjct: 316 ISYTTLIDGCCKEGDLETAFEHRKRMIQEN---------------IRLD--DVAYTA--- 355

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +    S+LL 
Sbjct: 356 ------LISGLCQEGRSIDAEKMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLK 409

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 410 EMQRDGHVPSVVTYNVLMNG 429


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 166/340 (48%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ N++  SL   R   +A+  LD        P   +  + I+     G I EA
Sbjct: 167 GFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEA 226

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRT-DLVWKLYH-----DLIESGYLIQA 208
                ++   G+   + T+N+ + G  K   ++R  +L+  L       D+I    L++A
Sbjct: 227 MKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRA 286

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
           F N GK  EG +L+ ++   G  P    ++ LIS  C    FGR+ E   +L  M+ +  
Sbjct: 287 FLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCR---FGRIDEAISVLKVMIEKEL 343

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD ++Y+ +I+ LCK  +   A  + + +   G +PD V Y T++  LCK G    A +
Sbjct: 344 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 403

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ ++   G  PN  +YN+MI       +   A  +   M+ KG     +TYN+LI+ LC
Sbjct: 404 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLC 463

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G  +EA  L ++M Q G    VI+YN ++ G CK  +I
Sbjct: 464 RDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRI 503



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 120/236 (50%), Gaps = 2/236 (0%)

Query: 191 LVWKLY-HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           LV K Y  D+I    LI+ F N   + +   ++ ++LE    P+  A+N +IS FC+   
Sbjct: 94  LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKVNR 152

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               +++L+ M AR   PD  TY  +I  LC  RK   A +V + L     +P  + YT 
Sbjct: 153 IEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTI 212

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I      G + +A K+  EM+ +GLLP+ YTYN++I G C+   +E A  L   +  KG
Sbjct: 213 LIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG 272

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                ++YN L+      G+ DE   L  EM  +G   + +TY+ LI   C+ G+I
Sbjct: 273 CKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 328



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 107/220 (48%), Gaps = 1/220 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C  GK +E    L  ++  G  P+     KLI  F   KN  + S ++  + +  
Sbjct: 74  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 133

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F Y  VI+G CK  +   A +V N +K RG++PD V Y  +I  LC    LG A 
Sbjct: 134 E-PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 192

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+  +++    +P   TY  +I        + EA +L +EML +G      TYN +I G+
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 252

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           C  G  + A  L   +  KG   DVI+YN L++ +  +GK
Sbjct: 253 CKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGK 292



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 137/317 (43%), Gaps = 33/317 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S N+L  + +    +      +    S G  PN  +  + I  LC  G I+EA
Sbjct: 272 GCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEA 331

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               S LK M                       +  +L  D      LI A C +G++  
Sbjct: 332 I---SVLKVM-----------------------IEKELTPDTYSYDPLISALCKEGRLDL 365

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              ++  ++ +G +P+   +N +++  C+  N  +  E+ + +      P+  +Y  +I+
Sbjct: 366 AIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMIS 425

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L     R  A  +   +  +G  PD + Y ++I  LC+ G + +A  +  +M   G  P
Sbjct: 426 ALWSCGDRSRALGMVPAMISKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP 485

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
              +YN ++ G C++  +++A  +  EM++KG      TY  LI G+   G   EA    
Sbjct: 486 TVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAM--- 542

Query: 398 EEMAQKGIFRDVITYNT 414
            E+A     RDVI+ ++
Sbjct: 543 -ELANSLFSRDVISQDS 558



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 86/187 (45%), Gaps = 36/187 (19%)

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
           +++N  CK+ K  E+      L  +GY PD ++ T +I G      +  A ++  E++  
Sbjct: 73  KLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRV-MEILES 131

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC-------- 385
              P+ + YN++I G+C+++ +E A ++   M  +G+    VTYN +I  LC        
Sbjct: 132 HTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLA 191

Query: 386 ---------------------------LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                                      + G  +EA  L EEM  +G+  D+ TYN +I+G
Sbjct: 192 LKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRG 251

Query: 419 YCKEGKI 425
            CKEG +
Sbjct: 252 MCKEGMV 258


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 162/332 (48%), Gaps = 12/332 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+V+ N +  +L ++   K AM+ LD        P+  +  + I+  C+   + +A 
Sbjct: 212 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 271

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
               +++  G    + T+N  + G  K  R D   K  +++         I    ++++ 
Sbjct: 272 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 331

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  +  +LL  +L  G  P    FN LI+  C +   GR  ++L  M      P++
Sbjct: 332 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 391

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +++G CK +K   A    + +  RG  PD V Y T++  LCK G +  A ++  +
Sbjct: 392 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 451

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +  KG  P   TYN++I G  ++   E A +L  EM  KG     +TY++L++GL   G+
Sbjct: 452 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 511

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA   F ++   GI  + ITYN+++ G CK
Sbjct: 512 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 543



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 19/347 (5%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQC 147
           F++L S  + G  PD++ C  L          K A   M+ L+ +G  P+  +  + I  
Sbjct: 134 FKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISG 193

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL-----GCIK-----IDRTDLVWKLYH 197
            C+SG I+ A      L  M V   + T+N+ L      G +K     +DR  L  + Y 
Sbjct: 194 YCKSGEIDNAL---QVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR-QLQKECYP 249

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D+I    LI+A C +  V +  +LL ++   G  P+   +N LI+  C++       + L
Sbjct: 250 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 309

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M +    P+  T+  ++  +C + + ++A ++ +D+  +G  P  V +  +I+ LC+ 
Sbjct: 310 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 369

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G LG A  +  +M   G  PN  +YN ++HG+C+   ++ A      M+ +G     VTY
Sbjct: 370 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 429

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           NTL+  LC  G+ D A  +  +++ KG    +ITYNT+I G  K GK
Sbjct: 430 NTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 476



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 151/332 (45%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++  +      AM  LD   + G  P+  +  + I  +C+ G ++EA   
Sbjct: 249 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 308

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            + +   G   ++ T N  L       R     KL  D++  G          LI   C 
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 368

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    ++L ++   G  P + ++N L+  FC++K   R  E L  MV+R   PD  T
Sbjct: 369 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 428

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K   A  + N L  +G  P  + Y TVI GL K+G    A K+  EM 
Sbjct: 429 YNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMR 488

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY+S++ G  R   ++EA +   ++   G     +TYN+++ GLC   +TD
Sbjct: 489 RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD 548

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A      M  K       TY  LI+G   EG
Sbjct: 549 RAIDFLAYMISKRCKPTEATYTILIEGIAYEG 580



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 149/319 (46%), Gaps = 12/319 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ NVL + + +      A+ FL+   S G  PN  +  + ++ +C +G   +A
Sbjct: 281 GSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDA 340

Query: 158 FCAFSKLKEMGVFGSIKTWN--------SALLG-CIKIDRTDLVWKLYHDLIESGYLIQA 208
               S +   G   S+ T+N          LLG  I I     +     + +    L+  
Sbjct: 341 EKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 400

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC + K+    E L  ++  G  P+   +N L++  C+        E+L+ + ++  +P 
Sbjct: 401 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 460

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  VI+GL K  K   A ++ ++++ +G  PD + Y++++ GL + G + +A K + 
Sbjct: 461 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 520

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++   G+ PN  TYNS++ G C+    + A      M+ K    T  TY  LI G+   G
Sbjct: 521 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 580

Query: 389 RTDEAYHLFEEMAQKGIFR 407
              EA  L  E+  +G+ +
Sbjct: 581 LAKEALDLLNELCSRGLVK 599



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++    +G++ +G++ L  ++  G +P+      LI  FC      + + ++  +     
Sbjct: 121 LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 180

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+G CKS +   A +V + +      PD V Y T++  LC  G L  A +
Sbjct: 181 VPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAME 237

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +    + K   P+  TY  +I   C+   + +A +L  EM +KG     VTYN LI G+C
Sbjct: 238 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 297

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             GR DEA      M   G   +VIT+N +++  C  G+
Sbjct: 298 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 336



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           + ++    +  RG +PD +  T++I G C++G    A  +   +   G +P+  TYN +I
Sbjct: 132 DGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLI 191

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GYC+   ++ A ++   M         VTYNT++  LC  G+  +A  + +   QK  +
Sbjct: 192 SGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECY 248

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DVITY  LI+  CKE  +
Sbjct: 249 PDVITYTILIEATCKESGV 267



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L + G L D  K    M+++G +P+     S+I G+CRI   ++A  + + +   G    
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +TYN LI+G C  G  D A  + + M    +  DV+TYNT+++  C  GK+
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKL 232



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R   LE+  +  + M+ +G     +   +LI G C  G+T +A  + E + Q G   DVI
Sbjct: 126 RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 185

Query: 411 TYNTLIQGYCKEGKIVN 427
           TYN LI GYCK G+I N
Sbjct: 186 TYNVLISGYCKSGEIDN 202


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 159/329 (48%), Gaps = 16/329 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEM 167
           N++   L  A     A++ L      P PN++     I   C  G ++ A     +++E 
Sbjct: 158 NIMLRHLCSAGKPARALELLRQM---PRPNAVTYNTVIAGFCSRGRVQAALDIMREMRER 214

Query: 168 GVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVS 216
           G     + T+ + + G  K+ R D   K++ +++  G           LI  +C+ GK+ 
Sbjct: 215 GGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLD 274

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
                  +++E G+      +N L+             EL+  M  +  A D FTY  +I
Sbjct: 275 TALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILI 334

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG CK     +A  +F ++  RG     V YT++I+ L K G + +  K++ E + +G+ 
Sbjct: 335 NGHCKEGNVKKALEIFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIR 394

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   YN++I+ +    N++ A  +  EM  K      VTYNTL+ GLCL GR DEA  L
Sbjct: 395 PDLVLYNALINSHSTSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKL 454

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EM ++GI  D++TYNTLI GY  +G +
Sbjct: 455 IDEMTKRGIQPDLVTYNTLISGYSMKGDV 483



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 103/372 (27%), Positives = 172/372 (46%), Gaps = 57/372 (15%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+ V+ N +          + A+D +    +  G +PN  +    I   C+ G ++EA  
Sbjct: 183 PNAVTYNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVK 242

Query: 160 AFSKLKEMGVFGSIKT----WNSALLGCIKIDRTDLVWKLYHD-LIESGY---------L 205
            F    EM   G +K     +N+ + G     + D    LY D ++E G          L
Sbjct: 243 VFD---EMLTKGEVKPEAVMYNALIGGYCDQGKLDTAL-LYRDRMVERGVAMTVATYNLL 298

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM----- 260
           + A   DG+ +E YEL+ ++   GL  +   +N LI+  C++ N  +  E+   M     
Sbjct: 299 VHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRGV 358

Query: 261 ------------------------------VARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                                         V R   PD   Y  +IN    S     A+ 
Sbjct: 359 RATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSGNIDRAFE 418

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  +++++   PD V Y T++ GLC +G + +ARK+  EM  +G+ P+  TYN++I GY 
Sbjct: 419 IMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNTLISGYS 478

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
              ++++A R+  EM++KG+  T +TYN LI GLC +G+ D+A ++ +EM + GI  D  
Sbjct: 479 MKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENGITPDDS 538

Query: 411 TYNTLIQGYCKE 422
           TY +LI+G   E
Sbjct: 539 TYISLIEGLTTE 550



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 78/194 (40%), Positives = 107/194 (55%), Gaps = 8/194 (4%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFN 293
           T FN ++   C      R  ELL  M      P+  TY  VI G C SR R++ A  +  
Sbjct: 155 TTFNIMLRHLCSAGKPARALELLRQMP----RPNAVTYNTVIAGFC-SRGRVQAALDIMR 209

Query: 294 DLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCR 351
           +++ERG + P+   Y TVI G CK+G + +A K++ EM+ KG + P    YN++I GYC 
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L+ A      M+++G   T  TYN L+  L + GR  EAY L EEM  KG+  DV T
Sbjct: 270 QGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFT 329

Query: 412 YNTLIQGYCKEGKI 425
           YN LI G+CKEG +
Sbjct: 330 YNILINGHCKEGNV 343



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           T  +  ++  LC  G    A     E++ +   PN  TYN++I G+C    ++ A  + +
Sbjct: 154 TTTFNIMLRHLCSAGKPARA----LELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMR 209

Query: 364 EMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCK 421
           EM ++ G      TY T+I+G C  GR DEA  +F+EM  KG +  + + YN LI GYC 
Sbjct: 210 EMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCD 269

Query: 422 EGKI 425
           +GK+
Sbjct: 270 QGKL 273


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 163/348 (46%), Gaps = 17/348 (4%)

Query: 94  QWLHS--HYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           +WL      G++ D  +C ++  +  E     RAF     ++   G +PN  +    I  
Sbjct: 249 RWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKWVQ-MGLNPNLINFSSLING 307

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
           LC+ G I++AF    ++   G   ++ T  + + G  K   T+  ++L+  L+ S     
Sbjct: 308 LCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKP 367

Query: 204 ------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  +I  +C + K++    LL ++ E GLVP    +  LI   C+  NFGR  EL+
Sbjct: 368 NVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELM 427

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M      P+ FTY  +I+GLCK  +  EAY++     + G   D V YT +I   C+ 
Sbjct: 428 DLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQ 487

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
                A  ++  M   GL P+ +TYN +I  +CR   +EE+++L +E +  G   T  TY
Sbjct: 488 TDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETY 547

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++I G C  G    A   F +M   G   D ITY  LI G C E K+
Sbjct: 548 TSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKL 595



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/378 (26%), Positives = 166/378 (43%), Gaps = 37/378 (9%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGF----------------------SPDLVSCNVLFDSLV 117
           L Q+   ++S+ FF W+     F                      + +++ C V   S  
Sbjct: 112 LAQEAGSVVSLSFFNWVIGFSKFRHFMRLYIVCATTFLNNDNLDRATEVMQCMV--RSFS 169

Query: 118 EARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           E    K A++    + + G       L   I      G ++ A   F ++ +  V     
Sbjct: 170 EIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRAVVPDST 229

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQV 225
           ++   ++G  ++ R   V +   D+IE GY         +I  F   G V+  +   ++ 
Sbjct: 230 SYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVNRAFWYFKKW 289

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           ++ GL P    F+ LI+  C+  +  +  E+L  MV +   P+ +T+  +I+GLCK    
Sbjct: 290 VQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALIDGLCKKGWT 349

Query: 286 LEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            +A+R+F  L +   Y P+   YT +I+G CK   L  A  +   M  +GL+PN  TY  
Sbjct: 350 EKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTC 409

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G+C+  N   A  L   M  +G+     TYN +I GLC  GR  EAY L     + G
Sbjct: 410 LIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSG 469

Query: 405 IFRDVITYNTLIQGYCKE 422
           +  D +TY  LI  +C++
Sbjct: 470 LHADKVTYTILISEFCRQ 487



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 154/338 (45%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P++ +   L D L +     +AF++ +  + S  + PN  +    I   C+   +  
Sbjct: 328 GWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNR 387

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A     ++KE G+  +  T+   + G  K       ++L   + + G+         +I 
Sbjct: 388 AEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIID 447

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G+  E Y+LLR+ L+ GL  +   +  LIS FC + +  +   +   M      P
Sbjct: 448 GLCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQP 507

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I   C+ +K  E+ ++F +    G +P    YT++I G C+ G +  A K +
Sbjct: 508 DMHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFF 567

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M   G  P+  TY ++I G C    L+EA +L++ M+D G     VT  TL    C  
Sbjct: 568 HKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQ 627

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G +  A  + E + +K   R   T NTLI+  C E K+
Sbjct: 628 GDSATAMIILERLEKKLWIR---TVNTLIRKLCSEKKV 662



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++++F   GK+ E   ++ ++   GLV +    N +I             ++   M+ R 
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQNHGLVLKARILNFVIDVALALGFVDYAEKVFDEMLDRA 223

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+ +Y+ ++ G C+  +  +  R   D+ ERGY  D    T +I    + G++   R
Sbjct: 224 VVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKGFVN--R 281

Query: 325 KMWF--EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
             W+  + +  GL PN   ++S+I+G C+I ++++A  + +EM+ KG+     T+  LI 
Sbjct: 282 AFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTALID 341

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
           GLC  G T++A+ LF ++ +   ++ +V TY  +I GYCKE K+
Sbjct: 342 GLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKL 385


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +  H    PD+V+ ++L  SL +    K A D  D+    G +P+  S  + +
Sbjct: 321 AVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 379

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK------LY 196
                 G + +    F  +   G+     T+N    A   C  +D+  +++       + 
Sbjct: 380 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 439

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    +I A C  GK+ +  E   Q+++ G+ P+  A+N LI  FC   +  +  EL
Sbjct: 440 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL 499

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  PD V+Y+ ++ G C 
Sbjct: 500 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCL 559

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN   Y ++++GYC+I  ++E   L +EML +G   +T+ 
Sbjct: 560 VGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL 619

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y+ +I GL   GRT  A   F EM + GI  D+ TYN +++G  K
Sbjct: 620 YSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFK 664



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 169/374 (45%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PDLV+ N +  +L +ARA   A  FL                       STG     
Sbjct: 262 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 321

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS---- 178
                        P+  +L + +  LC+ G I+EA   F  +   G    + ++N     
Sbjct: 322 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 381

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I   +     LI+A+ N G + +   +  ++ + G+ P
Sbjct: 382 YATKGCL-VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 440

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +  +I+  C         E  + M+ +  APD + Y  +I G C     L+A  + 
Sbjct: 441 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELI 500

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++   G   D V ++++I+ LCK+G + DA+ ++   ++ GL P+   Y+ ++ GYC +
Sbjct: 501 SEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLV 560

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM Q+GI    I Y
Sbjct: 561 GKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILY 620

Query: 413 NTLIQGYCKEGKIV 426
           + +I G  + G+ V
Sbjct: 621 SIIIDGLFQAGRTV 634



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 159/354 (44%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   +++  N L +   EA+    A+D L       G  P+  S  +
Sbjct: 142 LALAFFGQLL-RTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 200

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC+ G   +A      + E G   S  +  +N+ + G  K    +    L+ ++++
Sbjct: 201 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 260

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C    + +    LRQ++   ++P N  +N LI  +     +  
Sbjct: 261 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKE 320

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M   +  PD  T   ++  LCK  K  EA  VF+ +  +G  PD   Y  +++
Sbjct: 321 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 380

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G    G L D   ++  M+  G+ P+ YT+N +I  Y     L++A  +  EM D G   
Sbjct: 381 GYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 440

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VTY T+IA LC  G+ D+A   F +M  +G+  D   YN LIQG+C  G ++
Sbjct: 441 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 494



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 132/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 134 CTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVP 193

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  +++ L+   C++   G+  +LL  M       +P+   Y  VI+G  K     +A  
Sbjct: 194 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 253

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y +V+H LCK   +  A     +M++K +LPN +TYN++I+GY 
Sbjct: 254 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 313

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM         VT + L+  LC +G+  EA  +F+ MA KG   DV 
Sbjct: 314 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 373

Query: 411 TYNTLIQGYCKEGKIVN 427
           +YN ++ GY  +G +V+
Sbjct: 374 SYNIMLNGYATKGCLVD 390



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 164/335 (48%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP++V+ N + D   +      A D        G  P+  +    +  LC++  +++A  
Sbjct: 229 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 288

Query: 160 AFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQAFC 210
              ++    V  +  T+N+ + G          +++ +      +  D++    L+ + C
Sbjct: 289 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 348

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK+ E  ++   +   G  P+  ++N +++ +  K     +++L   M+    APD +
Sbjct: 349 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 408

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +I          +A  +FN++++ G  PD V Y TVI  LC++G + DA + + +M
Sbjct: 409 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 468

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I +G+ P++Y YN +I G+C   +L +AK L  E+++ G     V ++++I  LC  GR 
Sbjct: 469 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 528

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +A ++F+     G+  D + Y+ L+ GYC  GK+
Sbjct: 529 MDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKM 563



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 162/372 (43%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+ S N++ +            D  D     G +P+  +  + I+     G++++A
Sbjct: 367 GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 426

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++++ GV   + T+ + +    +I + D   + ++ +I+ G          LIQ 
Sbjct: 427 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 486

Query: 209 FCNDGKVSEGYELLRQVLEDG-----------------------------------LVPE 233
           FC  G + +  EL+ +++ +G                                   L P+
Sbjct: 487 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 546

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              ++ L+  +C      +   +   MV+    P+   Y  ++NG CK  +  E   +F 
Sbjct: 547 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFR 606

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ +RG  P T++Y+ +I GL + G    A+  + EM   G+  +  TYN ++ G  +  
Sbjct: 607 EMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNR 666

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             +EA  L KE+         +T NT+I G+    R +EA  LF  +++  +  +V+TY+
Sbjct: 667 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPNVVTYS 726

Query: 414 TLIQGYCKEGKI 425
            +I    KEG +
Sbjct: 727 IMITNLIKEGLV 738



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/234 (21%), Positives = 103/234 (44%), Gaps = 9/234 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G + +A   F     +G+      ++  + G   + + +   +++  ++ +G 
Sbjct: 519 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 578

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G++ EG  L R++L+ G+ P    ++ +I    +         
Sbjct: 579 EPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKM 638

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             H M     A D  TY  V+ GL K+R   EA  +F +L+      + +   T+I G+ 
Sbjct: 639 KFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMF 698

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +   + +A+ ++  +    L+PN  TY+ MI    +   +EEA+ +   M + G
Sbjct: 699 QTRRVEEAKDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 752



 Score = 43.9 bits (102), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  +TY  ++    R    E A     ++L  G     +  N L+ G C   RTDEA 
Sbjct: 120 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 179

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +Y+ L++  C +GK
Sbjct: 180 DILLHRTPELGCVPDVFSYSILLKSLCDQGK 210


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 166/336 (49%), Gaps = 12/336 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+ N +  +L ++   K AM+ LD        P+  +  + I+  C+   + +A  
Sbjct: 209 SPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMK 268

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFC 210
              ++++ G    + T+N  + G  K  R D   +  +         ++I    ++++ C
Sbjct: 269 LLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMC 328

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           + G+  +  + L +++  G  P    FN LI+  C K   GR  ++L  M      P++ 
Sbjct: 329 STGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSL 388

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +Y  +++ LCK +K   A    + +  RG  PD V Y T++  LCK G +  A ++  ++
Sbjct: 389 SYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL 448

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG  P   TYN++I G  ++   ++A +L  EM  KG     +TY+TL+ GL   G+ 
Sbjct: 449 GSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKV 508

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           DEA   F ++ + G+  + ITYN+++ G CK  + V
Sbjct: 509 DEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTV 544



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 149/332 (44%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++  +      AM  LD     G  P+  +  + I  +C+ G ++EA   
Sbjct: 245 PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRF 304

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            + +   G   ++ T N  L       R     K   ++I  G          LI   C 
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCR 364

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    ++L ++ + G  P + ++N L+   C+ K   R  E L  MV+R   PD  T
Sbjct: 365 KGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVT 424

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K   A  + N L  +G  P  + Y TVI GL K+G   DA K+  EM 
Sbjct: 425 YNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMK 484

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY++++ G  R   ++EA     ++ + G     +TYN+++ GLC   +T 
Sbjct: 485 GKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTV 544

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A      M  +G      +Y  LI+G   EG
Sbjct: 545 RAIDFLAYMVARGCKPTETSYMILIEGLAYEG 576



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 143/299 (47%), Gaps = 6/299 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  +    I+ LC++G   +A      L++ G    + T+N  + G  K       
Sbjct: 140 GDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYCKTGEIGSA 199

Query: 193 WKLYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            +L        D++    +++  C+ GK+ E  E+L + ++    P+   +  LI   C+
Sbjct: 200 LQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCK 259

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +   G+  +LL  M  +   PD  TY  +ING+CK  +  EA R  N +   G  P+ + 
Sbjct: 260 ESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVIT 319

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +  ++  +C  G   DA K   EMI KG  P+  T+N +I+  CR   +  A  + ++M 
Sbjct: 320 HNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMP 379

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G    +++YN L+  LC   + + A    + M  +G + D++TYNTL+   CK+GK+
Sbjct: 380 QHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKV 438



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 145/322 (45%), Gaps = 30/322 (9%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +IRF   + S YG  P++++ N++  S+     +  A  FL      G SP+  +  + I
Sbjct: 301 AIRFLNHMPS-YGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILI 359

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
             LC  GLI  A     K+ + G   +  ++N                           L
Sbjct: 360 NFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNP--------------------------L 393

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + A C D K+    E L  ++  G  P+   +N L++  C+        E+L+ + ++  
Sbjct: 394 LHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGC 453

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +P   TY  VI+GL K  K  +A ++ +++K +G  PD + Y+T++ GL + G + +A  
Sbjct: 454 SPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIA 513

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            + ++   G+ PN  TYNS++ G C+      A      M+ +G   T  +Y  LI GL 
Sbjct: 514 FFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLA 573

Query: 386 LHGRTDEAYHLFEEMAQKGIFR 407
             G   EA  L  E+  +G+ +
Sbjct: 574 YEGLAKEALELLNELCSRGVVK 595



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 63/225 (28%), Positives = 110/225 (48%), Gaps = 3/225 (1%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           +E+   ++    +G++ EG++ L  ++  G +P+  A   LI   C+     + + ++  
Sbjct: 111 VENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEI 170

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           +      PD  TY  +I+G CK+ +   A ++ + +      PD V Y T++  LC  G 
Sbjct: 171 LEDSGAVPDVITYNVLISGYCKTGEIGSALQLLDRMS---VSPDVVTYNTILRTLCDSGK 227

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L +A ++    + +   P+  TY  +I   C+   + +A +L  EM DKG     VTYN 
Sbjct: 228 LKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNV 287

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LI G+C  GR DEA      M   G   +VIT+N +++  C  G+
Sbjct: 288 LINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGR 332



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 86/171 (50%), Gaps = 3/171 (1%)

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           + L  MV R   PD      +I GLCK+ K  +A RV   L++ G VPD + Y  +I G 
Sbjct: 131 KFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGY 190

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G +G A ++   M    + P+  TYN+++   C    L+EA  +    + +      
Sbjct: 191 CKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPDV 247

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +TY  LI   C      +A  L +EM  KG   DV+TYN LI G CKEG++
Sbjct: 248 ITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRL 298



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/87 (36%), Positives = 46/87 (52%)

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           E   N+ +    R   LEE  +  ++M+ +G     +   +LI GLC  G+T +A  + E
Sbjct: 110 EVENNNHLRRLVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVME 169

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +   G   DVITYN LI GYCK G+I
Sbjct: 170 ILEDSGAVPDVITYNVLISGYCKTGEI 196



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSP 136
           L +   V +++     L S  G SP L++ N + D L +      A+  LD     G  P
Sbjct: 432 LCKDGKVDVAVEILNQLGSK-GCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKP 490

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +    +  L   G ++EA   F  L+EMGV  +  T+NS +LG  K  +T       
Sbjct: 491 DIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFL 550

Query: 197 HDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             ++  G          LI+    +G   E  ELL ++   G+V +++A
Sbjct: 551 AYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSA 599


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 151/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +FC +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP++V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KDGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 156/328 (47%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +   C+ G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   +  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP + +F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK+    +A  + N++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 162/332 (48%), Gaps = 12/332 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            +PD+V+ N +  +L ++   K AM+ LD        P+  +  + I+  C+   + +A 
Sbjct: 155 VAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAM 214

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
               +++  G    + T+N  + G  K  R D   K  +++         I    ++++ 
Sbjct: 215 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 274

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  +  +LL  +L  G  P    FN LI+  C +   GR  ++L  M      P++
Sbjct: 275 CSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNS 334

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +++G CK +K   A    + +  RG  PD V Y T++  LCK G +  A ++  +
Sbjct: 335 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 394

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +  KG  P   TYN++I G  ++   E A +L  EM  KG     +TY++L++GL   G+
Sbjct: 395 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 454

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA   F ++   GI  + ITYN+++ G CK
Sbjct: 455 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCK 486



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 19/347 (5%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQC 147
           F++L S  + G  PD++ C  L          K A   M+ L+ +G  P+  +  + I  
Sbjct: 77  FKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISG 136

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL-----GCIK-----IDRTDLVWKLYH 197
            C+SG I+ A      L  M V   + T+N+ L      G +K     +DR  L  + Y 
Sbjct: 137 YCKSGEIDNAL---QVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEVLDR-QLQKECYP 192

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D+I    LI+A C +  V +  +LL ++   G  P+   +N LI+  C++       + L
Sbjct: 193 DVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFL 252

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M +    P+  T+  ++  +C + + ++A ++ +D+  +G  P  V +  +I+ LC+ 
Sbjct: 253 NNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQ 312

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G LG A  +  +M   G  PN  +YN ++HG+C+   ++ A      M+ +G     VTY
Sbjct: 313 GLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 372

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           NTL+  LC  G+ D A  +  +++ KG    +ITYNT+I G  K GK
Sbjct: 373 NTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 419



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 151/332 (45%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++  +      AM  LD   + G  P+  +  + I  +C+ G ++EA   
Sbjct: 192 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKF 251

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            + +   G   ++ T N  L       R     KL  D++  G          LI   C 
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 311

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    ++L ++   G  P + ++N L+  FC++K   R  E L  MV+R   PD  T
Sbjct: 312 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 371

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K   A  + N L  +G  P  + Y TVI GL K+G    A K+  EM 
Sbjct: 372 YNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMR 431

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY+S++ G  R   ++EA +   ++   G     +TYN+++ GLC   +TD
Sbjct: 432 RKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTD 491

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A      M  K       TY  LI+G   EG
Sbjct: 492 RAIDFLAYMISKRCKPTEATYTILIEGIAYEG 523



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 149/319 (46%), Gaps = 12/319 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ NVL + + +      A+ FL+   S G  PN  +  + ++ +C +G   +A
Sbjct: 224 GSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDA 283

Query: 158 FCAFSKLKEMGVFGSIKTWN--------SALLG-CIKIDRTDLVWKLYHDLIESGYLIQA 208
               S +   G   S+ T+N          LLG  I I     +     + +    L+  
Sbjct: 284 EKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHG 343

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC + K+    E L  ++  G  P+   +N L++  C+        E+L+ + ++  +P 
Sbjct: 344 FCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPV 403

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  VI+GL K  K   A ++ ++++ +G  PD + Y++++ GL + G + +A K + 
Sbjct: 404 LITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFH 463

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++   G+ PN  TYNS++ G C+    + A      M+ K    T  TY  LI G+   G
Sbjct: 464 DLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEG 523

Query: 389 RTDEAYHLFEEMAQKGIFR 407
              EA  L  E+  +G+ +
Sbjct: 524 LAKEALDLLNELCSRGLVK 542



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 3/219 (1%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++    +G++ +G++ L  ++  G +P+      LI  FC      + + ++  +     
Sbjct: 64  LRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGA 123

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+G CKS +   A +V + +      PD V Y T++  LC  G L  A +
Sbjct: 124 VPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSGKLKQAME 180

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +    + K   P+  TY  +I   C+   + +A +L  EM +KG     VTYN LI G+C
Sbjct: 181 VLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGIC 240

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             GR DEA      M   G   +VIT+N +++  C  G+
Sbjct: 241 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGR 279



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 3/139 (2%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           + ++    +  RG +PD +  T++I G C++G    A  +   +   G +P+  TYN +I
Sbjct: 75  DGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLI 134

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GYC+   ++ A ++   M         VTYNT++  LC  G+  +A  + +   QK  +
Sbjct: 135 SGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECY 191

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DVITY  LI+  CKE  +
Sbjct: 192 PDVITYTILIEATCKESGV 210



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L + G L D  K    M+++G +P+     S+I G+CRI   ++A  + + +   G    
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +TYN LI+G C  G  D A  + + M    +  DV+TYNT+++  C  GK+
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKL 175



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 42/77 (54%)

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R   LE+  +  + M+ +G     +   +LI G C  G+T +A  + E + Q G   DVI
Sbjct: 69  RNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVI 128

Query: 411 TYNTLIQGYCKEGKIVN 427
           TYN LI GYCK G+I N
Sbjct: 129 TYNVLISGYCKSGEIDN 145


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 161/338 (47%), Gaps = 29/338 (8%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           R F       GF P++VS N +   + S       +  +D +   G  P+  +    I  
Sbjct: 193 REFIGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISG 252

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           +C+ G +EEA   F K+ E+G+  +  T+N+                          LI 
Sbjct: 253 MCKEGRLEEASGLFDKMVEIGLVPNAVTYNT--------------------------LID 286

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +CN G +   +    ++++ G++P  + +N L+     +   G   +++  M  +   P
Sbjct: 287 GYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIP 346

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +ING  +      A+ + N++  +G  P  V YT++I+ L +   + +A  ++
Sbjct: 347 DAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLF 406

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +++ +G+ P+   +N+MI G+C   N+E A  L KEM  K      VT+NTL+ G C  
Sbjct: 407 EKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCRE 466

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+ +EA  L +EM  +GI  D I+YNTLI GY + G I
Sbjct: 467 GKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDI 504



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 135/296 (45%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L D        + A  + D     G  P+ ++  L +  L   G + EA
Sbjct: 273 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 332

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++++ G+     T+N  + G  +       + L+++++  G          LI  
Sbjct: 333 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYV 392

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                ++ E  +L  ++L+ G+ P+   FN +I   C   N  R   LL  M  ++  PD
Sbjct: 393 LSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPD 452

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  ++ G C+  K  EA  + +++K RG  PD + Y T+I G  + G + DA  +  
Sbjct: 453 EVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRD 512

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           EM+  G  P   TYN++I   C+    + A+ L KEM++KG      TY +LI G+
Sbjct: 513 EMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    +   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVD 364



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 153/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +   C+ G
Sbjct: 91  LTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IKI   D  ++L   +  SG         
Sbjct: 151 EIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  PD  TY  +I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G   +V+T
Sbjct: 391 XCKKGDVWTGSKLLKEMQRXGYVPNVVT 418


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 15/342 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  PD+V    L DSL +    K A   MD +   G  PN  +  + I C+C+ G +
Sbjct: 212 SEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSV 271

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----------G 203
           +EA     K+ E GV   + T+N+ + G   +   D    L  +++              
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFN 331

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +IQ  C+ G++ + +++   + E G +     +N LI          +  EL+  M + 
Sbjct: 332 SVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSL 391

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD+FTY  +I G CK  +   A  + + +++RG  P+   Y  ++  +C+ G +  A
Sbjct: 392 GLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERA 451

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           R ++ EM +   L +   Y++MIHG C+  +L+ AK L K ++D+G     VTY+ +I  
Sbjct: 452 RNLFNEMDNNFPL-DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINM 510

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               G  + A  + ++M   G   DV  +++LIQGY  +G+I
Sbjct: 511 FAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEI 552



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A C D    +   LLR +   G+  +   +  LI   C+     +  EL+  M    
Sbjct: 121 LMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 180

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+   Y  ++ G CKS +  +  +VF ++ E+G  PD VMYT +I  LCK+G    A 
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M+ +GL PN  TYN +I+  C+  +++EA  + K+M +KG     VTYNTLI GL
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 385 CLHGRTDEAYHLFEEMAQ-KGIFR-DVITYNTLIQGYCKEGKI 425
                 DEA  L EEM + K I + +V+T+N++IQG C  G++
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRM 343



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 105 DLVSCNVLFDSLVE------ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           D VS N +  +L        A A   AM         PN  S  + ++ LC   L ++A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
                ++  GV   + T+                          G LI+  C+  +V + 
Sbjct: 136 GLLRSMRSAGVRADVVTY--------------------------GTLIRGLCDAAEVDKA 169

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            EL+ ++ E G+ P    ++ L+  +C+   +  V ++   M  +   PD   Y  +I+ 
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDS 229

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A+ V + +  RG  P+ V Y  +I+ +CK G + +A  +  +M  KG+ P+
Sbjct: 230 LCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG---YGETTVTYNTLIAGLCLHGRTDEAYH 395
             TYN++I G   +  ++EA  L +EM+ +G        VT+N++I GLC  GR  +A+ 
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +   M + G   +++TYN LI G  +  K+
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKV 378



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 154/339 (45%), Gaps = 15/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+   L   L +A     A++ +     +G  PN       +Q  C+SG  E+ 
Sbjct: 145 GVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDV 204

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++ E G+   +  +   +    K+ +      +   ++  G          LI  
Sbjct: 205 GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 264

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV-ARNRA- 266
            C +G V E   +L+++ E G+ P+   +N LI    +         LL  MV  +N   
Sbjct: 265 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  T+  VI GLC   +  +A++V   ++E G + + V Y  +I GL ++  +  A ++
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM   GL P+ +TY+ +I G+C++  ++ A+ L   M D+G       Y  L+  +C 
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  + A +LF EM       DV+ Y+T+I G CK G +
Sbjct: 445 QGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDL 482



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 3/198 (1%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA---PDNFTYEEVINGLCKSRKRLE 287
           V +  ++N +++  C + +  R   LL  M         P+  +Y  ++  LC  R   +
Sbjct: 74  VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQ 133

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  +   ++  G   D V Y T+I GLC    +  A ++  EM   G+ PN   Y+S++ 
Sbjct: 134 AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           GYC+    E+  ++  EM +KG     V Y  LI  LC  G+  +A+ + + M ++G+  
Sbjct: 194 GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 408 DVITYNTLIQGYCKEGKI 425
           +V+TYN LI   CKEG +
Sbjct: 254 NVVTYNVLINCMCKEGSV 271



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 131/302 (43%), Gaps = 17/302 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-----FSPNPNSLELYIQCLCESG 152
           S  G +PD+V+ N L   L +      AM  L+          PN  +    IQ LC+ G
Sbjct: 282 SEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIG 341

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            + +AF   + ++E G   ++ T+N  + G +++ +     +L  ++   G         
Sbjct: 342 RMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYS 401

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI+ FC   +V    +LL  + + G+ PE   +  L+   CE+    R   L + M   
Sbjct: 402 ILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEM--D 459

Query: 264 NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           N  P D   Y  +I+G CK+     A  +   + + G  PD V Y+ VI+   K G +  
Sbjct: 460 NNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEA 519

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  +M   G LP+   ++S+I GY     + +   L +EM+ K     +   +TL  
Sbjct: 520 ANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLST 579

Query: 383 GL 384
            L
Sbjct: 580 SL 581


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++   L   L    +A      +D +   G  PN  +  + +  LC+ G  + A
Sbjct: 185 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 244

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +K++   +   +  +N+ +    K    D    L+ ++   G          LI  
Sbjct: 245 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 304

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G+ S+  +LL  ++E  + P    FN LI  F ++  F    +L   M+ R+  PD
Sbjct: 305 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 364

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  ++NG C   +  +A ++F  +  +   PD V Y T+I G CK   + D  +++ 
Sbjct: 365 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 424

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM H+GL+ +  TY ++I G     + + A+++ K+M+  G     +TY+ L+ GLC +G
Sbjct: 425 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 484

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +F+ M +  I  D+  Y T+I+G CK GK+
Sbjct: 485 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 521



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 171/335 (51%), Gaps = 14/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P+LV+  V+ + L +     +A++ L+    +     + ++   I  LC+   +++A
Sbjct: 220 GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 279

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 280 LNLFKEMETKGIRPNVVTY-SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 338

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK  E  +L   +++  + P+   +N L++ FC      +  ++   MV+++  P
Sbjct: 339 AFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 398

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I G CKS++  +   +F ++  RG V DTV YTT+I GL   G   +A+K++
Sbjct: 399 DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 458

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  G+ P+  TY+ ++ G C    LE+A  +   M           Y T+I G+C  
Sbjct: 459 KQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 518

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G+ D+ + LF  ++ KG+  +V+TYNT+I G C +
Sbjct: 519 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 553



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 162/371 (43%), Gaps = 47/371 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCA 160
           P +V  N L  ++ + + F V +   +        + L  Y   I C C    I  A   
Sbjct: 83  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 142

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G   SI T +S L G     R      L   ++E GY         LI     
Sbjct: 143 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 202

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K SE   L+ ++++ G  P    +  +++  C++ +      LL+ M A     D   
Sbjct: 203 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 262

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA-------- 323
           +  +I+ LCK R   +A  +F +++ +G  P+ V Y+++I  LC  G   DA        
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 324 ---------------------------RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                                       K++ +MI + + P+ +TYNS+++G+C  D L+
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +AK++ + M+ K      VTYNTLI G C   R ++   LF EM+ +G+  D +TY TLI
Sbjct: 383 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 442

Query: 417 QGYCKEGKIVN 427
           QG   +G   N
Sbjct: 443 QGLFHDGDCDN 453



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 136/282 (48%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           +++A   F  + +     SI  +N  L    K+ + D+V  L          H L     
Sbjct: 66  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 125

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   ++S    LL ++++ G  P     + L++ +C  K       L+  MV   
Sbjct: 126 LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 185

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +I+GL    K  EA  + + + +RG  P+ V Y  V++GLCK G    A 
Sbjct: 186 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 245

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  +   +N++I   C+  ++++A  L KEM  KG     VTY++LI+ L
Sbjct: 246 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 305

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L  +M +K I  +++T+N LI  + KEGK V
Sbjct: 306 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 347



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 150/343 (43%), Gaps = 47/343 (13%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V  N + DSL + R    A++    +++ G  PN  +    I CLC  G   +A    
Sbjct: 259 DVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLL 318

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE--------------SGY--- 204
           S + E  +  ++ T+N+ +   +K  +     KLY D+I+              +G+   
Sbjct: 319 SDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMH 378

Query: 205 ---------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
                                      LI+ FC   +V +G EL R++   GLV +   +
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             LI       +     ++   MV+    PD  TY  +++GLC + K  +A  VF+ +++
Sbjct: 439 TTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQK 498

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
                D  +YTT+I G+CK G + D   ++  +  KG+ PN  TYN+MI G C    L+E
Sbjct: 499 SEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQE 558

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           A  L K+M + G    + TYNTLI      G    +  L  EM
Sbjct: 559 AYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 601



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 99/211 (46%)

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           +D K+ +   L   +++   +P    FNKL+S   + K F  V  L   M         +
Sbjct: 62  HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLY 121

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +IN  C+  +   A  +   + + GY P  V  +++++G C    + DA  +  +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +  G  P+  T+ ++IHG    +   EA  L   M+ +G     VTY  ++ GLC  G T
Sbjct: 182 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 241

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           D A +L  +M    I  DV+ +NT+I   CK
Sbjct: 242 DLALNLLNKMEAAKIEADVVIFNTIIDSLCK 272


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 167/352 (47%), Gaps = 15/352 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF------LDSTGFSPNPNSLE 142
           ++ FF  + +       + S N + + +++   F  A  F       +S GF PN  +  
Sbjct: 119 AVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYN 178

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           L I+ LC+ G I+ A   F ++        + T+++ + G  K  R D    L  ++   
Sbjct: 179 LIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAE 238

Query: 203 G---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          LI A   +G +S   +L+  +   G VP    +N LI   C K    + 
Sbjct: 239 GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 298

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             LL  MV+    P+  TY  +INGL K R+  +   +   ++ERG   +  +Y+++I G
Sbjct: 299 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 358

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L K G   +A ++W EM  KG  PN   Y + I G CR +  +EA+ + +EML KG+   
Sbjct: 359 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 418

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             TY++L+ G    G + +A  +++EM  + +  +V+  + L+ G C+ G++
Sbjct: 419 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 470



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 103/199 (51%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P    +N +I   C+     R  +    M  +N  PD FTY  ++NGLCK R+  EA
Sbjct: 169 GFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEA 228

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             + ++++  G +P+ V +  +I  L K G L  A K+   M  KG +PNE TYN++IHG
Sbjct: 229 VFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 288

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C    L++A  L ++M+        VTY T+I GL    R ++  H+   M ++G   +
Sbjct: 289 LCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKAN 348

Query: 409 VITYNTLIQGYCKEGKIVN 427
              Y++LI G  KEGK  N
Sbjct: 349 EYIYSSLISGLFKEGKSEN 367



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 152/395 (38%), Gaps = 70/395 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ NVL D+L +      A   +D+    G  PN  +    I  LC  G +++A
Sbjct: 239 GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 298

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+       +  T+ + + G +K  R +    +   + E G          LI  
Sbjct: 299 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 358

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK      L +++ E G  P    +   I   C  +      ++L  M+++   P+
Sbjct: 359 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 418

Query: 269 NFTYEEV-----------------------------------INGLCKSRKRLEAYRVFN 293
            FTY  +                                   +NGLC+S +  EA  V+ 
Sbjct: 419 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWT 478

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI--HKGLLPNEYTYNSMIHGYCR 351
            +   G  PD V Y+++I GLC +G +    K+++EM        P+  TYN + +  CR
Sbjct: 479 HMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 538

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNT---------------------LIAGLCLHGRT 390
            DNL  A  L   MLD+G    ++T N                      L+  L    R 
Sbjct: 539 QDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERK 598

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             A  + EEM  + +  +  T++ +IQ  CK  +I
Sbjct: 599 LSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRI 633


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 167/352 (47%), Gaps = 15/352 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF------LDSTGFSPNPNSLE 142
           ++ FF  + +       + S N + + +++   F  A  F       +S GF PN  +  
Sbjct: 143 AVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYLHVFGANSKGFQPNLLTYN 202

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           L I+ LC+ G I+ A   F ++        + T+++ + G  K  R D    L  ++   
Sbjct: 203 LIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAE 262

Query: 203 G---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          LI A   +G +S   +L+  +   G VP    +N LI   C K    + 
Sbjct: 263 GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 322

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             LL  MV+    P+  TY  +INGL K R+  +   +   ++ERG   +  +Y+++I G
Sbjct: 323 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 382

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L K G   +A ++W EM  KG  PN   Y + I G CR +  +EA+ + +EML KG+   
Sbjct: 383 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 442

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             TY++L+ G    G + +A  +++EM  + +  +V+  + L+ G C+ G++
Sbjct: 443 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRL 494



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/199 (34%), Positives = 103/199 (51%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P    +N +I   C+     R  +    M  +N  PD FTY  ++NGLCK R+  EA
Sbjct: 193 GFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEA 252

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             + ++++  G +P+ V +  +I  L K G L  A K+   M  KG +PNE TYN++IHG
Sbjct: 253 VFLLDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHG 312

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C    L++A  L ++M+        VTY T+I GL    R ++  H+   M ++G   +
Sbjct: 313 LCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKAN 372

Query: 409 VITYNTLIQGYCKEGKIVN 427
              Y++LI G  KEGK  N
Sbjct: 373 EYIYSSLISGLFKEGKSEN 391



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/395 (23%), Positives = 152/395 (38%), Gaps = 70/395 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ NVL D+L +      A   +D+    G  PN  +    I  LC  G +++A
Sbjct: 263 GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 322

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+       +  T+ + + G +K  R +    +   + E G          LI  
Sbjct: 323 LSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISG 382

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK      L +++ E G  P    +   I   C  +      ++L  M+++   P+
Sbjct: 383 LFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPN 442

Query: 269 NFTYEEV-----------------------------------INGLCKSRKRLEAYRVFN 293
            FTY  +                                   +NGLC+S +  EA  V+ 
Sbjct: 443 AFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLREALTVWT 502

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI--HKGLLPNEYTYNSMIHGYCR 351
            +   G  PD V Y+++I GLC +G +    K+++EM        P+  TYN + +  CR
Sbjct: 503 HMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPDVVTYNILFNALCR 562

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNT---------------------LIAGLCLHGRT 390
            DNL  A  L   MLD+G    ++T N                      L+  L    R 
Sbjct: 563 QDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFLDELVVRLLKRERK 622

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             A  + EEM  + +  +  T++ +IQ  CK  +I
Sbjct: 623 LSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRI 657


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 129/221 (58%), Gaps = 3/221 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++  C   ++ +  +LL ++ E G VP++  +N LIS + + K+FG+  + L  MV  +
Sbjct: 16  LLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNH 75

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   TY  +++GLCK+ +  +A ++ ++++++G  P+   Y  ++ GLC+   L +A+
Sbjct: 76  CLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAK 135

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           KM  EM  +G  P+  TYNS I G C+ D ++EA++    M         V+Y T+I GL
Sbjct: 136 KMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGL 192

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G  D A  + ++M  +G   DV+TY++LI G+CK G++
Sbjct: 193 CKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEV 233



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 144/299 (48%), Gaps = 12/299 (4%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +  + ++ LC S  +E+A     ++KEMG       +N+ + G  K       +K 
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 196 YHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             +++++  L         +   C  G+  +  +LL ++ + G  P    +N ++   CE
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           ++      ++L  M  R   PD  TY   I GLCK   R++  R F  L      PD V 
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKC-DRVDEARKF--LARMPVTPDVVS 184

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YTTVI+GLCK G L  A +M  +M ++G  P+  TY+S+I G+C+   +E A  L   ML
Sbjct: 185 YTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSML 244

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G     V YN+L+  L   G   +A  +  EM ++G   DV++YN  I G CK  ++
Sbjct: 245 KLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERV 303



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 10/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V+   + D L +A   K A+  LD     G SPN  +  + ++ LCE   ++EA   
Sbjct: 78  PTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKM 137

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------DLIESGYLIQAFCNDGK 214
             ++   G F  + T+NS + G  K DR D   K         D++    +I   C  G 
Sbjct: 138 LEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGD 197

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           +     +L Q+   G  P+   ++ LI  FC+     R   LL +M+     P+   Y  
Sbjct: 198 LDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNS 257

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           ++  L +     +A  +  +++ RG+ PD V Y   I GLCK   +  A+ ++  M+ +G
Sbjct: 258 LLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERG 317

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN  +Y+ ++   C+   L++A  L ++  +K      + Y  L+ GLC  GR DEA 
Sbjct: 318 CTPNASSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEAC 377

Query: 395 HLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
            LF ++  + I   DV  YN ++  +CK  +I
Sbjct: 378 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQI 409



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 62/166 (37%), Positives = 94/166 (56%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+ ++  PD FT+  ++ GLC+S +  +A ++   +KE G VPD  +Y  +I G  K   
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
            G A K   EM+    LP   TY +++ G C+    ++A +L  EM DKG      TYN 
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++ GLC   + DEA  + EEMA +G F DV+TYN+ I+G CK  ++
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRV 166



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 82/339 (24%), Positives = 148/339 (43%), Gaps = 21/339 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           ++ G +PD+V+ + L D   +    + AM  LDS    G  PN  +    +  L   G I
Sbjct: 209 TNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHI 268

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            +A     +++  G    + ++N+ + G  K +R      ++  ++E G          L
Sbjct: 269 GKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSML 328

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C   ++ +   L+ Q  E   + +   +  L+   C+   F     L   ++    
Sbjct: 329 VEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKI 388

Query: 266 A-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F Y  +++  CK R+  +A ++   + ER    + V +  ++HGLC    L DA 
Sbjct: 389 CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC-NVVTWNILVHGLCVDDRLSDAE 447

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M   M+ +G +P+  TY +++   C+      A  L +E +  G     VTY+ LI GL
Sbjct: 448 TMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGL 507

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                 +EAY LF ++       DV  +N +I GY + G
Sbjct: 508 VHENMAEEAYLLFTKL-------DVALWNAMILGYAENG 539



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 146/339 (43%), Gaps = 22/339 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF+PD+VS N   D L +A   K A    D     G +PN +S  + ++ LC+   +++A
Sbjct: 282 GFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDA 341

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----------GYLIQ 207
                + +E      I  +   L G  K  R D    L+  +++             ++ 
Sbjct: 342 ITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLD 401

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C   ++ +  ++ +Q+LE       T +N L+   C          +L TMV     P
Sbjct: 402 SHCKRRQIDKALQIHKQMLERNCCNVVT-WNILVHGLCVDDRLSDAETMLLTMVDEGFIP 460

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++ +CK  K   A  +F +  + G VPD V Y+ +I GL       +A  ++
Sbjct: 461 DFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLF 520

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            ++       +   +N+MI GY    + +   +L  E+++        T+   I+G  + 
Sbjct: 521 TKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESDVEPNARTFGKEISGKLVK 573

Query: 388 GRT-DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  +A  LF+   + G F D+   NTLI  + K G +
Sbjct: 574 AESLGKARGLFDRAVKGGFFPDLFVANTLIDVFAKCGDL 612



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/201 (23%), Positives = 77/201 (38%), Gaps = 37/201 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD V+   L D++ +      A++  +     G  P+  +    I  L    + EEA
Sbjct: 457 GFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEA 516

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           +  F+KL        +  WN+ +LG  +    DL  KL+ +LIES               
Sbjct: 517 YLLFTKL-------DVALWNAMILGYAENGSGDLGLKLFVELIESD-------------- 555

Query: 218 GYELLRQVLEDGLVPENTAFNKLIS-RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
                       + P    F K IS +  + ++ G+   L    V     PD F    +I
Sbjct: 556 ------------VEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLI 603

Query: 277 NGLCKSRKRLEAYRVFNDLKE 297
           +   K     EA R+F  +K+
Sbjct: 604 DVFAKCGDLEEARRIFYSMKQ 624


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 166/340 (48%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ N++  SL   R   +A+  LD        P   +  + I+     G I EA
Sbjct: 177 GFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEA 236

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRT-DLVWKLYH-----DLIESGYLIQA 208
                ++   G+   + T+N+ + G  K   ++R  +L+  L       D+I    L++A
Sbjct: 237 MKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRA 296

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
           F N GK  EG +L+ ++   G  P    ++ LIS  C    FGR+ E   +L  M+ +  
Sbjct: 297 FLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCR---FGRIDEAISVLKVMIEKEL 353

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD ++Y+ +I+ LCK  +   A  + + +   G +PD V Y T++  LCK G    A +
Sbjct: 354 TPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALE 413

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ ++   G  PN  +YN+MI       +   A  +   M+ KG     +TYN+LI+ LC
Sbjct: 414 IFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLC 473

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G  +EA  L ++M Q G    VI+YN ++ G CK  +I
Sbjct: 474 RDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRI 513



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 119/236 (50%), Gaps = 2/236 (0%)

Query: 191 LVWKLY-HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           LV K Y  D+I    LI+ F N   + +   ++ ++LE    P+  A+N +IS FC+   
Sbjct: 104 LVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-EILESHTEPDVFAYNAVISGFCKVNQ 162

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               +++L+ M AR   PD  TY  +I  LC  RK   A  V + L     +P  + YT 
Sbjct: 163 IEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYTI 222

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I      G + +A K+  EM+ +GLLP+ YTYN++I G C+   +E A  L   +  KG
Sbjct: 223 LIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG 282

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                ++YN L+      G+ DE   L  EM  +G   + +TY+ LI   C+ G+I
Sbjct: 283 CEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRI 338



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 106/220 (48%), Gaps = 1/220 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C  GK +E    L  ++  G  P+     KLI  F   KN  + S ++  + +  
Sbjct: 84  LLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILESHT 143

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F Y  VI+G CK  +   A +V N +K RG++PD V Y  +I  LC    LG A 
Sbjct: 144 E-PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLAL 202

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +++    +P   TY  +I        + EA +L +EML +G      TYN +I G+
Sbjct: 203 TVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 262

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           C  G  + A  L   +  KG   DVI+YN L++ +  +GK
Sbjct: 263 CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGK 302



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/317 (23%), Positives = 137/317 (43%), Gaps = 33/317 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S N+L  + +    +      +    S G  PN  +  + I  LC  G I+EA
Sbjct: 282 GCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEA 341

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               S LK M                       +  +L  D      LI A C +G++  
Sbjct: 342 I---SVLKVM-----------------------IEKELTPDTYSYDPLISALCKEGRLDL 375

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              ++  ++ +G +P+   +N +++  C+  N  +  E+ + +      P+  +Y  +I+
Sbjct: 376 AIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMIS 435

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L     R  A  +   +  +G  PD + Y ++I  LC+ G + +A  +  +M   G  P
Sbjct: 436 ALWSCGDRSRALGMVPAMISKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRP 495

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
              +YN ++ G C++  +++A  +  EM++KG      TY  LI G+   G   EA    
Sbjct: 496 TVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAM--- 552

Query: 398 EEMAQKGIFRDVITYNT 414
            E+A     RDVI+ ++
Sbjct: 553 -ELANSLFSRDVISQDS 568



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 61/191 (31%), Positives = 90/191 (47%), Gaps = 1/191 (0%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T   KL++R C+   F      L  +V +   PD     ++I G    +   +A RV  +
Sbjct: 79  THLMKLLNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVM-E 137

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + E    PD   Y  VI G CK+  +  A ++   M  +G LP+  TYN MI   C    
Sbjct: 138 ILESHTEPDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRK 197

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L  A  +  ++L      T +TY  LI    + G  +EA  L EEM  +G+  D+ TYN 
Sbjct: 198 LGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNA 257

Query: 415 LIQGYCKEGKI 425
           +I+G CKEG +
Sbjct: 258 IIRGMCKEGMV 268


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D VS   L + L      K A+  L   D     PN       I  +C+  L+ +A
Sbjct: 158 GFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDA 217

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
           F  + ++    +   + T++S + G   + +      L++ +I             LI  
Sbjct: 218 FDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDG 277

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +GKV E   +L  +++  +  +   +N L+  +C  K   +   L + M  R   PD
Sbjct: 278 FCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPD 337

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            ++Y  +ING CK +   EA ++F ++  +   P+ V Y +++ GLCK G    A ++  
Sbjct: 338 VWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVD 397

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G   N  TYNS++   C+ +++++A  L  ++ +KG      TY  LI GLC  G
Sbjct: 398 EMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVG 457

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R D+A  +FE++  KG   ++ TY +LI G+C +G
Sbjct: 458 RLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKG 492



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 166/337 (49%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD ++CN+L +   +    K +          G+ P+  +  + I+ LC  G + +A
Sbjct: 88  GIKPDFITCNLLMNCFSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKA 147

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+   G      ++ + + G  ++  T    +L           +++    +I +
Sbjct: 148 LYFHDKVVAQGFQLDQVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDS 207

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C D  V++ ++L  +++   + P+   ++ LIS FC         +L + M++ N  P+
Sbjct: 208 MCKDKLVNDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPN 267

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +I+G CK  K  EA  V   + ++    D V Y +++ G C +  +  A+ ++ 
Sbjct: 268 VYTFSILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFN 327

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  +G+ P+ ++Y+ MI+G+C+I  ++EA +L +EM  K      VTYN+L+ GLC  G
Sbjct: 328 VMAQRGVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSG 387

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           RT  A  L +EM  +G   ++ITYN+++   CK   +
Sbjct: 388 RTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHV 424



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/317 (26%), Positives = 147/317 (46%), Gaps = 12/317 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ + L          K A+D  +   S   +PN  +  + I   C+ G + EA 
Sbjct: 229 ISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKVREAK 288

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
              + + +  V   + T+NS + G   + + +    L++ + + G          +I  F
Sbjct: 289 NVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIMINGF 348

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C    V E  +L  ++    + P    +N L+   C+        EL+  M  R +  + 
Sbjct: 349 CKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQPSNI 408

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++ +CK+    +A  +   +KE+G  PD   YT +I+GLCK+G L DA+K++ +
Sbjct: 409 ITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDDAQKVFED 468

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++ KG  PN YTY S+I+G+C     +E   +  +M D G     +TY  LI  L     
Sbjct: 469 LLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIHSLFEKDE 528

Query: 390 TDEAYHLFEEMAQKGIF 406
            D+A  L  EM  +G+ 
Sbjct: 529 NDKAEKLLREMIARGLL 545



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 114/226 (50%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           IE G ++ +     +      L +Q+  +G+ P+    N L++ F +  +      +   
Sbjct: 59  IEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCFSQLGHIKFSFSVFAK 118

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           ++ +   PD  T+  +I GLC   +  +A    + +  +G+  D V Y T+I+GLC++G 
Sbjct: 119 ILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLINGLCRVGE 178

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              A ++   +  K + PN   Y+++I   C+   + +A  L+ EM+ K      VTY++
Sbjct: 179 TKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRISPDVVTYSS 238

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI+G C+ G+   A  LF  M    I  +V T++ LI G+CKEGK+
Sbjct: 239 LISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDGFCKEGKV 284



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/174 (25%), Positives = 87/174 (50%), Gaps = 4/174 (2%)

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           + LLH     N  P    + +++  L K+++   A  +   ++  G  PD +    +++ 
Sbjct: 46  NRLLH---KNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNC 102

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
             ++G +  +  ++ +++ KG  P+  T+  +I G C    + +A   H +++ +G+   
Sbjct: 103 FSQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLD 162

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            V+Y TLI GLC  G T  A  L   +  K +  +V+ Y+T+I   CK+ K+VN
Sbjct: 163 QVSYGTLINGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKD-KLVN 215


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 144/284 (50%), Gaps = 9/284 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           ESG + +A   F   K+   +    T    L   +K+    LVW  Y +++E GY     
Sbjct: 78  ESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILECGYPASLY 137

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               ++  FC +G++     +   + + GL P   +FN L++ +    +      L   M
Sbjct: 138 FFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAM 197

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            A    PD +TY  +INGLCK  K  EA  +FN++ +RG VP+ V +TT+I   CK G +
Sbjct: 198 HASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMV 257

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+ +G  P+  TYN++I+G C+  +L++ + L  EM   G     +TY TL
Sbjct: 258 DSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTL 317

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           I G C  G  + A+   + M ++ I  D + Y  L+ G C+EG+
Sbjct: 318 IDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGR 361


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++   L   L    +A      +D +   G  PN  +  + +  LC+ G  + A
Sbjct: 147 GYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLA 206

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +K++   +   +  +N+ +    K    D    L+ ++   G          LI  
Sbjct: 207 LNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISC 266

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ G+ S+  +LL  ++E  + P    FN LI  F ++  F    +L   M+ R+  PD
Sbjct: 267 LCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPD 326

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  ++NG C   +  +A ++F  +  +   PD V Y T+I G CK   + D  +++ 
Sbjct: 327 IFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFR 386

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM H+GL+ +  TY ++I G     + + A+++ K+M+  G     +TY+ L+ GLC +G
Sbjct: 387 EMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNG 446

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  +F+ M +  I  D+  Y T+I+G CK GK+
Sbjct: 447 KLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKV 483



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 171/335 (51%), Gaps = 14/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P+LV+  V+ + L +     +A++ L+    +     + ++   I  LC+   +++A
Sbjct: 182 GCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDA 241

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
              F +++  G+  ++ T+ S+L+ C+    R     +L  D+IE            LI 
Sbjct: 242 LNLFKEMETKGIRPNVVTY-SSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALID 300

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK  E  +L   +++  + P+   +N L++ FC      +  ++   MV+++  P
Sbjct: 301 AFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFP 360

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I G CKS++  +   +F ++  RG V DTV YTT+I GL   G   +A+K++
Sbjct: 361 DVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVF 420

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+  G+ P+  TY+ ++ G C    LE+A  +   M           Y T+I G+C  
Sbjct: 421 KQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKA 480

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G+ D+ + LF  ++ KG+  +V+TYNT+I G C +
Sbjct: 481 GKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSK 515



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 162/371 (43%), Gaps = 47/371 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCA 160
           P +V  N L  ++ + + F V +   +        + L  Y   I C C    I  A   
Sbjct: 45  PSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALAL 104

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G   SI T +S L G     R      L   ++E GY         LI     
Sbjct: 105 LGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFL 164

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K SE   L+ ++++ G  P    +  +++  C++ +      LL+ M A     D   
Sbjct: 165 HNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVI 224

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA-------- 323
           +  +I+ LCK R   +A  +F +++ +G  P+ V Y+++I  LC  G   DA        
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 324 ---------------------------RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
                                       K++ +MI + + P+ +TYNS+++G+C  D L+
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +AK++ + M+ K      VTYNTLI G C   R ++   LF EM+ +G+  D +TY TLI
Sbjct: 345 KAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLI 404

Query: 417 QGYCKEGKIVN 427
           QG   +G   N
Sbjct: 405 QGLFHDGDCDN 415



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 136/282 (48%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           +++A   F  + +     SI  +N  L    K+ + D+V  L          H L     
Sbjct: 28  LDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLYTYNI 87

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   ++S    LL ++++ G  P     + L++ +C  K       L+  MV   
Sbjct: 88  LINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMG 147

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +I+GL    K  EA  + + + +RG  P+ V Y  V++GLCK G    A 
Sbjct: 148 YRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLAL 207

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  +   +N++I   C+  ++++A  L KEM  KG     VTY++LI+ L
Sbjct: 208 NLLNKMEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCL 267

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L  +M +K I  +++T+N LI  + KEGK V
Sbjct: 268 CSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFV 309



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 150/344 (43%), Gaps = 47/344 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
            D+V  N + DSL + R    A++    +++ G  PN  +    I CLC  G   +A   
Sbjct: 220 ADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQL 279

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE--------------SGY-- 204
            S + E  +  ++ T+N+ +   +K  +     KLY D+I+              +G+  
Sbjct: 280 LSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCM 339

Query: 205 ----------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                                       LI+ FC   +V +G EL R++   GLV +   
Sbjct: 340 HDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVT 399

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +  LI       +     ++   MV+    PD  TY  +++GLC + K  +A  VF+ ++
Sbjct: 400 YTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQ 459

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           +     D  +YTT+I G+CK G + D   ++  +  KG+ PN  TYN+MI G C    L+
Sbjct: 460 KSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQ 519

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           EA  L K+M + G    + TYNTLI      G    +  L  EM
Sbjct: 520 EAYALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREM 563



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 99/211 (46%)

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           +D K+ +   L   +++   +P    FNKL+S   + K F  V  L   M         +
Sbjct: 24  HDMKLDDAIGLFGGMVKSRPLPSIVEFNKLLSAIAKMKKFDVVISLGEKMQRLEIVHGLY 83

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +IN  C+  +   A  +   + + GY P  V  +++++G C    + DA  +  +M
Sbjct: 84  TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 143

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +  G  P+  T+ ++IHG    +   EA  L   M+ +G     VTY  ++ GLC  G T
Sbjct: 144 VEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDT 203

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           D A +L  +M    I  DV+ +NT+I   CK
Sbjct: 204 DLALNLLNKMEAAKIEADVVIFNTIIDSLCK 234


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 159/336 (47%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           F P +   N L D + +    +VA+  L      G  PN  S    I  LC SG +E AF
Sbjct: 240 FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAF 299

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVWKLY------HDLIESGYLIQAF 209
             F+++   G   +I T+   + GC    K+     +WKL        +++    LI   
Sbjct: 300 ALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGL 359

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C++G + E  ++  Q+   G +P  T ++ LI  F +  +    SE  + M++    P+ 
Sbjct: 360 CSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGCRPNV 419

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +++ LCK+    +A  +   +   G  P+T+ + T I GLC  G +  A K+   
Sbjct: 420 VTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLER 479

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G LPN  TYN ++    R++  EEA  L +E+  +      VTYNT++ G    G 
Sbjct: 480 MQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVLYGFSRAGM 539

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  LF +   +G   D ITYNT+I  YCK+GK+
Sbjct: 540 MGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKV 575



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 173/388 (44%), Gaps = 29/388 (7%)

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL------FD 114
           +L+  P  N  DP   ++ L Q+++VL  ++  + L S  GF   + + N        + 
Sbjct: 21  VLNSNPIINPRDP--NKQQLLQESDVLKRLKTDRNLSSVLGFFSAIANSNAFQHTASTYR 78

Query: 115 SLVEARAFKVAMDF-------LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
            ++E    +  MD        +   G +   +     I      G  E+A   F ++ E 
Sbjct: 79  VMIERLGRECEMDMVQYILQQMKMDGINCCEDLFICIINGYKRVGSAEQALKMFYRIGEF 138

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
           G   +++ +N  L   +  ++  ++  LY ++ + G          L++A C + +V   
Sbjct: 139 GCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLKALCKNDRVDAA 198

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           ++L  ++   G  P+   +  ++S  C+        EL     A    P    Y  +I+G
Sbjct: 199 HKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL-----AGRFKPSVPVYNALIDG 253

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           +CK  +   A ++  ++ + G  P+ V Y+ +I+ LC  G +  A  ++ +M  +G   N
Sbjct: 254 MCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDAN 313

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
            +T+  +I G      L EA  L K M+  G     V YNTLI GLC +G  +EA  + +
Sbjct: 314 IHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCD 373

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +M + G   +V TY+ LI G+ K G +V
Sbjct: 374 QMQRSGCLPNVTTYSILIDGFAKSGDLV 401



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/297 (24%), Positives = 138/297 (46%), Gaps = 10/297 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC +G +EEA     +++  G   ++ T++  + G  K       
Sbjct: 344 GCEPNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGA 403

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            + ++ +I  G          ++   C +    +   L+ ++  +G  P    FN  I  
Sbjct: 404 SETWNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKG 463

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C         +LL  M      P+  TY E+++ L +  K  EA+ +F +++ R   P+
Sbjct: 464 LCGNGRVEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPN 523

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y TV++G  + G +G+A +++ + + +G  P+  TYN+MIH YC+   ++ A +L +
Sbjct: 524 LVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVE 583

Query: 364 EMLD-KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            +   K +    +TY +LI G C     +EA    ++   +GI  +  T+N L++ +
Sbjct: 584 RVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 14/169 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +++  + +  H G  P++ + N L D+L     ++ A      +++    PN  +    +
Sbjct: 473 AMKLLERMQGH-GCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNTVL 531

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL-----LGCIKI-----DRTDLVWKL 195
                +G++ EA   F K    G      T+N+ +      G +KI     +R   + + 
Sbjct: 532 YGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMKEW 591

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           + D+I    LI   CN   + E    L + +  G+ P    +N L+  F
Sbjct: 592 HPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 157/310 (50%), Gaps = 12/310 (3%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MDF D     P   S    +  L +SG  ++A   + ++++ G+   + ++   +    K
Sbjct: 102 MDFYDC---EPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCK 158

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R     +L +++   G          ++  F  +   +EGYEL  ++L  G+    + 
Sbjct: 159 TSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLST 218

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FNKL+   C+K +     +LL  ++ R   P+ FTY   I GLC+  +   A R+   L 
Sbjct: 219 FNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLI 278

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           E+G  PD + Y  +I+GLCK     +A     +M+++GL P+ YTYN++I GYC+   ++
Sbjct: 279 EQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQ 338

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A+R+  + +  G+     TY +LI GLC  G T+ A  LF E   KGI  +VI YNTLI
Sbjct: 339 LAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398

Query: 417 QGYCKEGKIV 426
           +G   +G I+
Sbjct: 399 KGLSNQGMIL 408



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 107/363 (29%), Positives = 157/363 (43%), Gaps = 22/363 (6%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
           +VL+   +F   H  Y      G +PD+ S  +   S  +      A+  L++   S   
Sbjct: 119 SVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNN--MSSQG 176

Query: 139 NSLELYIQCLCESGLIEEAFCA-----FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             + +   C    G  EE F A     F K+   GV   + T+N  L    K        
Sbjct: 177 CEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECE 236

Query: 194 KLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           KL   +I+ G L         IQ  C  G++     ++  ++E G  P+   +N LI   
Sbjct: 237 KLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGL 296

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+   F      L  MV     PD++TY  +I G CK      A R+  D    G+VPD 
Sbjct: 297 CKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQ 356

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y ++I GLC  G    A  ++ E + KG+ PN   YN++I G      + EA +L  E
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANE 416

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M +KG      T+N L+ GLC  G   +A  L + M  KG F D+ T+N LI GY  + K
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLK 476

Query: 425 IVN 427
           + N
Sbjct: 477 MEN 479



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/372 (26%), Positives = 157/372 (42%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S  L + N L   L +    K     LD     G  PN  +  L+IQ LC+ G ++ A
Sbjct: 211 GVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGA 270

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 L E G    + T+N+ + G  K  +          ++  G          LI  
Sbjct: 271 VRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAG 330

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G V     ++   + +G VP+   +  LI   C +    R   L +  + +   P+
Sbjct: 331 YCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPN 390

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I GL      LEA ++ N++ E+G +P+   +  +++GLCKMG + DA  +  
Sbjct: 391 VILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVK 450

Query: 329 EMIHKGLLPNEYTYNSMIHGY-----------------------------------CRID 353
            MI KG  P+ +T+N +IHGY                                   C+  
Sbjct: 451 VMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTS 510

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             E+    +K M++KG      T+N L+  LC + + DEA  L EEM  K +  D +T+ 
Sbjct: 511 KFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFG 570

Query: 414 TLIQGYCKEGKI 425
           TLI G+CK G +
Sbjct: 571 TLIDGFCKNGDL 582



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 150/303 (49%), Gaps = 9/303 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ++G S   ++    ++ LC+ G ++E      K+ + GV  ++ T+N  + G  +    D
Sbjct: 209 ASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELD 268

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              ++   LIE G          LI   C + K  E    L +++ +GL P++  +N LI
Sbjct: 269 GAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLI 328

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           + +C+         ++   V     PD FTY  +I+GLC   +   A  +FN+   +G  
Sbjct: 329 AGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIK 388

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+ ++Y T+I GL   G + +A ++  EM  KGL+P   T+N +++G C++  + +A  L
Sbjct: 389 PNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            K M+ KGY     T+N LI G     + + A  + + M   G+  DV TYN+L+ G CK
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCK 508

Query: 422 EGK 424
             K
Sbjct: 509 TSK 511



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/365 (26%), Positives = 164/365 (44%), Gaps = 17/365 (4%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           F +N    F + L Q+  +  ++R    L    G  PD+++ N L   L +   F+ A  
Sbjct: 252 FTYN---LFIQGLCQRGELDGAVRMVGCLIEQ-GPKPDVITYNNLIYGLCKNSKFQEAEV 307

Query: 128 FLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
           +L    + G  P+  +    I   C+ G+++ A          G      T+ S + G  
Sbjct: 308 YLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLC 367

Query: 185 KIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
               T+    L+++ +  G          LI+   N G + E  +L  ++ E GL+PE  
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQ 427

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            FN L++  C+         L+  M+++   PD FT+  +I+G     K   A  + + +
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            + G  PD   Y ++++GLCK     D  + +  M+ KG  PN +T+N ++   CR   L
Sbjct: 488 LDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKL 547

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNT 414
           +EA  L +EM +K      VT+ TLI G C +G  D AY LF +M +   +     TYN 
Sbjct: 548 DEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNI 607

Query: 415 LIQGY 419
           +I  +
Sbjct: 608 IIHAF 612



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 152/338 (44%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  +   L D L        A+   +     G  PN       I+ L   G+I EA
Sbjct: 351 GFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGMILEA 410

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++ E G+   ++T+N  + G  K+        L   +I  GY         LI  
Sbjct: 411 AQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +    K+    E+L  +L++G+ P+   +N L++  C+   F  V E   TMV +  AP+
Sbjct: 471 YSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPN 530

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  ++  LC+ RK  EA  +  ++K +   PD V + T+I G CK G L  A  ++ 
Sbjct: 531 LFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFR 590

Query: 329 EMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           +M     +  +  TYN +IH +    N+  A++L +EM+D+  G    TY  ++ G C  
Sbjct: 591 KMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKT 650

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  +  Y    EM + G    + T   +I   C E ++
Sbjct: 651 GNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRV 688



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 126/265 (47%), Gaps = 10/265 (3%)

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--IQAFCNDGKVSEGY 219
           S ++++G +G  +     L+        D+   + + ++E  Y+  ++ +   GKV E  
Sbjct: 45  SVIEKLGYYGKFEAMEEVLV--------DMRENVGNHMLEGVYVGAMKNYGRKGKVQEAV 96

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            +  ++      P   ++N ++S   +   F +  ++   M  R   PD +++   +   
Sbjct: 97  NVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSF 156

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK+ +   A R+ N++  +G   + V Y TV+ G  +  +  +  +++ +M+  G+    
Sbjct: 157 CKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCL 216

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T+N ++   C+  +++E ++L  +++ +G      TYN  I GLC  G  D A  +   
Sbjct: 217 STFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGC 276

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGK 424
           + ++G   DVITYN LI G CK  K
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSK 301



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 4/180 (2%)

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR----LEAYRVFNDLKERGYVPDTV 305
           +G+   +   +V       N   E V  G  K+  R     EA  VF  +      P   
Sbjct: 53  YGKFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVF 112

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  ++  L   G+   A K++  M  +G+ P+ Y++   +  +C+      A RL   M
Sbjct: 113 SYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLLNNM 172

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +G     V Y T++ G        E Y LF +M   G+   + T+N L++  CK+G +
Sbjct: 173 SSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKKGDV 232


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 171/374 (45%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           G +PD+ S   L   L   +  + A + +     D     PN  S    I    + G + 
Sbjct: 210 GCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVG 269

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLI 206
           +A+  F K+ + G+  ++ T NS + G  K+   D    +   +I+            LI
Sbjct: 270 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 329

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             + + G+ +E   +L+++  DG  P    ++ LI   C+        E+ ++M+   + 
Sbjct: 330 HGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQK 389

Query: 267 PDNFTYEEVINGL-----------------------------------CKSRKRLEAYRV 291
           P+  TY  +++G                                    CK  +  EA   
Sbjct: 390 PNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLT 449

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           FN ++++G++PD V YTTVI GLCK+G L DA   + +MI  GL P+  T+N++IHG+  
Sbjct: 450 FNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFAL 509

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               E+A+ L  EM+D+G      T+N++I  L   G+  EA  LF+ M + G   +V++
Sbjct: 510 HGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVS 569

Query: 412 YNTLIQGYCKEGKI 425
           YNT+I GY   G++
Sbjct: 570 YNTMIHGYFIAGEV 583



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 15/338 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKV---AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF- 158
           +PD+ +  +L     +A    +   A+  +  TG      +    ++ LC      +A  
Sbjct: 141 APDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRAQAVTFTPLLRTLCAEKRTSDAMN 200

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLIQ 207
               ++ E+G    + ++ + L G     + +   +L H + E G            +I 
Sbjct: 201 IVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIH 260

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F  +G V + Y L  ++L+ G+ P     N +I   C+ +   +   +L  M+  +  P
Sbjct: 261 GFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMP 320

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+G   S +  EA R+  ++   G  P+ V Y+ +I  LCK G   +AR+++
Sbjct: 321 NCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIF 380

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI  G  PN  TY S++HGY    NL +   +   M+  G       +N  I   C  
Sbjct: 381 NSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKC 440

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR DEA   F +M Q+G   D++ Y T+I G CK G++
Sbjct: 441 GRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRL 478



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 145/319 (45%), Gaps = 39/319 (12%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           +F+ +  A A KVA          P+  +  + I C C++G +   F A  ++ + G+  
Sbjct: 128 MFNRMARAGAKKVA----------PDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRA 177

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL-LRQVLEDGL 230
              T+                            L++  C + + S+   + LR++ E G 
Sbjct: 178 QAVTFTP--------------------------LLRTLCAEKRTSDAMNIVLRRMPELGC 211

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVINGLCKSRKRLEA 288
            P+  ++  L+   C +K     +EL+H M     N  P+  +Y  VI+G  K     +A
Sbjct: 212 TPDVFSYTTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPNVVSYTTVIHGFFKEGDVGKA 271

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           Y +F  + + G  P+ V   +VI GLCK+  +  A  +  +MI + ++PN  TYNS+IHG
Sbjct: 272 YTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHG 331

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           Y       EA R+ KEM   G     VTY+ LI  LC  G   EA  +F  M Q G   +
Sbjct: 332 YLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPN 391

Query: 409 VITYNTLIQGYCKEGKIVN 427
             TY +L+ GY  EG +V+
Sbjct: 392 ASTYGSLLHGYATEGNLVD 410



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 153/337 (45%), Gaps = 14/337 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  P++V+CN + D L + +A   A   L         PN  +    I     SG   E
Sbjct: 281 HGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTE 340

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESGY---------LI 206
           A     ++   G   ++ T+ S L+ C+ K        ++++ +I+SG          L+
Sbjct: 341 AVRILKEMSRDGQRPNVVTY-SMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTYGSLL 399

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +  +G + +   +   ++++G+ P    FN  I  +C+       S   + M  +   
Sbjct: 400 HGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCKCGRLDEASLTFNKMQQQGFM 459

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD   Y  VI+GLCK  +  +A   F  + + G  PD + + T+IHG    G    A ++
Sbjct: 460 PDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDIITFNTLIHGFALHGKWEKAEEL 519

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           ++EM+ +G+ PN  T+NSMI    +   + EA++L   M   G     V+YNT+I G  +
Sbjct: 520 FYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFI 579

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G   E   L ++M   G+    +T+NTL+ G    G
Sbjct: 580 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMG 616


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 15/342 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  PD+V    L DSL +    K A   MD +   G  PN  +  + I C+C+ G +
Sbjct: 212 SEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSV 271

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----------G 203
           +EA     K+ E GV   + T+N+ + G   +   D    L  +++              
Sbjct: 272 KEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFN 331

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +IQ  C+ G++ + +++   + E G +     +N LI          +  EL+  M + 
Sbjct: 332 SVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSL 391

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD+FTY  +I G CK  +   A  + + +++RG  P+   Y  ++  +C+ G +  A
Sbjct: 392 GLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERA 451

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           R ++ EM +   L +   Y++MIHG C+  +L+ AK L K ++D+G     VTY+ +I  
Sbjct: 452 RNLFNEMDNNFPL-DVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINM 510

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               G  + A  + ++M   G   DV  +++LIQGY  +G+I
Sbjct: 511 FAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEI 552



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A C D    +   LLR +   G+  +   +  LI   C+     +  EL+  M    
Sbjct: 121 LMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESG 180

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+   Y  ++ G CKS +  +  +VF ++ E+G  PD VMYT +I  LCK+G    A 
Sbjct: 181 IEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAH 240

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M+ +GL PN  TYN +I+  C+  +++EA  + K+M +KG     VTYNTLI GL
Sbjct: 241 GVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGL 300

Query: 385 CLHGRTDEAYHLFEEMAQ-KGIFR-DVITYNTLIQGYCKEGKI 425
                 DEA  L EEM + K I + +V+T+N++IQG C  G++
Sbjct: 301 SDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRM 343



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 151/330 (45%), Gaps = 36/330 (10%)

Query: 105 DLVSCNVLFDSLVE------ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           D VS N +  +L        A A   AM         PN  S  + ++ LC   L ++A 
Sbjct: 76  DAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQAV 135

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
                ++  GV   + T+                          G LI+  C+  +V + 
Sbjct: 136 GLLRSMRSAGVRADVVTY--------------------------GTLIRGLCDAAEVDKA 169

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            EL+ ++ E G+ P    ++ L+  +C+   +  V ++   M  +   PD   Y  +I+ 
Sbjct: 170 VELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDS 229

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A+ V + +  RG  P+ V Y  +I+ +CK G + +A  +  +M  KG+ P+
Sbjct: 230 LCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPD 289

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG---YGETTVTYNTLIAGLCLHGRTDEAYH 395
             TYN++I G   +  ++EA  L +EM+ +G        VT+N++I GLC  GR  +A+ 
Sbjct: 290 VVTYNTLIKGLSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQ 348

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +   M + G   +++TYN LI G  +  K+
Sbjct: 349 VRAMMEETGCMVNLVTYNLLIGGLLRVHKV 378



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 154/339 (45%), Gaps = 15/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+   L   L +A     A++ +     +G  PN       +Q  C+SG  E+ 
Sbjct: 145 GVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDV 204

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++ E G+   +  +   +    K+ +      +   ++  G          LI  
Sbjct: 205 GKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNVLINC 264

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV-ARNRA- 266
            C +G V E   +L+++ E G+ P+   +N LI    +         LL  MV  +N   
Sbjct: 265 MCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVK 324

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  T+  VI GLC   +  +A++V   ++E G + + V Y  +I GL ++  +  A ++
Sbjct: 325 PNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMEL 384

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM   GL P+ +TY+ +I G+C++  ++ A+ L   M D+G       Y  L+  +C 
Sbjct: 385 MDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCE 444

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  + A +LF EM       DV+ Y+T+I G CK G +
Sbjct: 445 QGMMERARNLFNEM-DNNFPLDVVAYSTMIHGACKAGDL 482



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 98/198 (49%), Gaps = 3/198 (1%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA---PDNFTYEEVINGLCKSRKRLE 287
           V +  ++N +++  C + +  R   LL  M         P+  +Y  ++  LC  R   +
Sbjct: 74  VRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALCADRLADQ 133

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  +   ++  G   D V Y T+I GLC    +  A ++  EM   G+ PN   Y+S++ 
Sbjct: 134 AVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNVVVYSSLLQ 193

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           GYC+    E+  ++  EM +KG     V Y  LI  LC  G+  +A+ + + M ++G+  
Sbjct: 194 GYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEP 253

Query: 408 DVITYNTLIQGYCKEGKI 425
           +V+TYN LI   CKEG +
Sbjct: 254 NVVTYNVLINCMCKEGSV 271



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 157/368 (42%), Gaps = 30/368 (8%)

Query: 39  LYTEIAKQVCKITRTKPR-------WEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIR 91
           +YT +   +CK+ + K           + L  ++ ++N          + ++ +V  +I 
Sbjct: 222 MYTGLIDSLCKVGKAKKAHGVMDMMVRRGLEPNVVTYNV-----LINCMCKEGSVKEAIG 276

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-----FSPNPNSLELYIQ 146
             + + S  G +PD+V+ N L   L +      AM  L+          PN  +    IQ
Sbjct: 277 VLKKM-SEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQ 335

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC+ G + +AF   + ++E G   ++ T+N  + G +++ +     +L  ++   G   
Sbjct: 336 GLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEP 395

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  LI+ FC   +V    +LL  + + G+ PE   +  L+   CE+    R   L 
Sbjct: 396 DSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLF 455

Query: 258 HTMVARNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           + M   N  P D   Y  +I+G CK+     A  +   + + G  PD V Y+ VI+   K
Sbjct: 456 NEM--DNNFPLDVVAYSTMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAK 513

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A  +  +M   G LP+   ++S+I GY     + +   L +EM+ K     +  
Sbjct: 514 SGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGEINKVLELIREMITKNIALDSKI 573

Query: 377 YNTLIAGL 384
            +TL   L
Sbjct: 574 ISTLSTSL 581


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 62  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHMMKLKYFKLVWGFYEEILECGY 121

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G +     +   + + GL P   +FN L++ +    +      
Sbjct: 122 PASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 181

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 241

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 242 KSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 301

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M Q+ I  D + Y  LI G C+EG+ ++
Sbjct: 302 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLD 353



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 155/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + +++ + FK+   F +       P SL  +   +   C+ G I  A   F+ +
Sbjct: 92  TCRKVLEHMMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAI 151

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C + K+
Sbjct: 152 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 211

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L+ GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 212 DDANELFDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTL 271

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 272 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 331

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G       
Sbjct: 332 RLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSK 391

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A D +D     G  P+ 
Sbjct: 242 KSGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 300

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G +E AF    ++ +                 I++D  D+ +     
Sbjct: 301 ITYTTLIDGCCKEGDLETAFEHRKRMIQEN---------------IRLD--DVAYTA--- 340

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +    S+LL 
Sbjct: 341 ------LISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLK 394

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 395 EMQRDGHVPSVVTYNVLMNG 414


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 144/292 (49%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +    E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +ING CK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+    D + Y  LI G C EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVD 370



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K 
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKX 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 229 DDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI +  
Sbjct: 289 IYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENX 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +   Y ++I G C      +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 349 RLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D     G  P+ 
Sbjct: 259 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK 317

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +          N  L                 D
Sbjct: 318 ITYTTLIDGCCKEGDLDXAFEHXKRMIQE---------NXRL-----------------D 351

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +    LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +  + S+LL 
Sbjct: 352 XVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 411

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 412 EMQRDGHVPSVVTYNVLMNG 431


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P  V       S+ + + +   +     +D  G + N  +L + I  LC    I 
Sbjct: 79  HMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIH 138

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLI 206
            A    SK+ ++G+     T+ + + G     R     +L++++         +    L+
Sbjct: 139 FAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILV 198

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C  G VSE   +   + E G+ P    +N L++ +C +      S++   MV +  A
Sbjct: 199 DVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCA 258

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   +Y  +ING CKSR+  EA  +   + E+  +P+TV Y T++ GLC    L +A+++
Sbjct: 259 PSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQEL 318

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + +M   G+LPN  TY+ ++ G C+  +LEEA +L   M ++      V YN LI G+ +
Sbjct: 319 FKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFI 378

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G+ + A  LF ++   GI   V TYN +I+G  KEG
Sbjct: 379 AGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEG 415



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 149/322 (46%), Gaps = 29/322 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+   L + L      K A++  +        PN  +  + +  LC+ G++ EA
Sbjct: 151 GIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEA 210

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
            C F  + E GV  +I T+N+ +                     +GY ++   ND   S+
Sbjct: 211 RCVFETMTEKGVEPNIYTYNALM---------------------NGYCLRLEMNDA--SK 247

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            +E++   +  G  P   +++ LI+ +C+ +       LL  M  +   P+  TY  ++ 
Sbjct: 248 VFEIM---VGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQ 304

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC +   LEA  +F  +   G +P+   Y+ ++ GLCK G L +A K+   M  + L P
Sbjct: 305 GLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEP 364

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +   YN +I G      LE AK L  ++   G   +  TYN +I GL   G +DEAY LF
Sbjct: 365 DIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLF 424

Query: 398 EEMAQKGIFRDVITYNTLIQGY 419
            +M   G   D  +YN +IQG+
Sbjct: 425 RKMEDDGFLPDSCSYNVIIQGF 446



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 120/227 (52%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           +E G  + +     + S    L  Q+   G+   +   N LI+  C   +      +L  
Sbjct: 87  VELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSK 146

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M      PD+ T+  +INGLC   +  EA  +FN++  R  +P+TV +T ++  LCK G 
Sbjct: 147 MFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGM 206

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +AR ++  M  KG+ PN YTYN++++GYC    + +A ++ + M+ KG   +  +Y+ 
Sbjct: 207 VSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSI 266

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LI G C   R DEA  L  +M++K +  + +TYNTL+QG C    ++
Sbjct: 267 LINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLL 313



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 109/224 (48%)

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
           +G  +    ND  + +      +++     P      K +    +KK +  V  L + M 
Sbjct: 54  NGGFVSNNSNDIGIDDAMASFYRMIHMNPRPSFVELGKFLGSIAKKKQYSTVVSLCNQMD 113

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
               A +++T   +IN LC+      A  V + + + G  PD+V +TT+I+GLC  G + 
Sbjct: 114 LFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIK 173

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A +++ EM  +  +PN  T+  ++   C+   + EA+ + + M +KG      TYN L+
Sbjct: 174 EAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALM 233

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G CL    ++A  +FE M  KG    V +Y+ LI GYCK  +I
Sbjct: 234 NGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRI 277



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 89/186 (47%), Gaps = 12/186 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ V+ N L   L  A +   A +      S+G  PN  +  + +  LC+ G +EEA   
Sbjct: 294 PNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKL 353

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            + ++E  +   I  +N  + G     + ++  +L+  L  +G          +I+    
Sbjct: 354 LTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLK 413

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G   E Y+L R++ +DG +P++ ++N +I  F + ++     +L+  MV R  + D+ T
Sbjct: 414 EGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRFSADSST 473

Query: 272 YEEVIN 277
           ++ +++
Sbjct: 474 FKMLLD 479


>gi|357494039|ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
 gi|355518643|gb|AET00267.1| Auxin response factor [Medicago truncatula]
          Length = 948

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/367 (31%), Positives = 164/367 (44%), Gaps = 44/367 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-DSTGFSPNPNSL--ELYIQCLCESGLIEEA 157
           G SP + +  V+  +         A   L D T     PNS+  ++ I  L E+  + EA
Sbjct: 195 GISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEA 254

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++  MG    ++T+N  + G  K  R     KL+          D +  GYL+  
Sbjct: 255 MKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHG 314

Query: 209 FCNDGKVSEGYELLRQV----------LEDGLV----------------------PENTA 236
            C  GKV E   +L ++          L +G V                      P+   
Sbjct: 315 LCRMGKVDEARAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFT 374

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FN +I   C+K       E L  MV +   P+  TY  +I+G CK     EA +V N + 
Sbjct: 375 FNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMS 434

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +G   +TV Y  +I  LCK G + DA +M+ EM  KG  P+ YT+NS+I+G C+ D +E
Sbjct: 435 AKGLSLNTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKME 494

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  L+++ML +G    TVTYNTLI          +A  L  EM  +G   D ITYN LI
Sbjct: 495 EALGLYRDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLI 554

Query: 417 QGYCKEG 423
           +  CK G
Sbjct: 555 KALCKTG 561



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 146/326 (44%), Gaps = 29/326 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + N++ D L +      A++FLD     GF PN  +  + I   C+ G  EEA
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEA 426

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               + +   G+     + N+    C                     LI A C DGK+ +
Sbjct: 427 SKVVNSMSAKGL-----SLNTVGYNC---------------------LIGALCKDGKIQD 460

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             ++  ++   G  P+   FN LI   C+         L   M+      +  TY  +I+
Sbjct: 461 ALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIH 520

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
              +     +A ++  +++ RG   D + Y  +I  LCK G       +  +M  + + P
Sbjct: 521 AFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFP 580

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  + N +I+ +CR   + +A +  ++M+ +G     VTYN+LI GLC  GR  EA +LF
Sbjct: 581 SINSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLF 640

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
             +  KGI  D +TYNTLI  YC EG
Sbjct: 641 NGLQAKGIHPDAVTYNTLISRYCYEG 666



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 166/338 (49%), Gaps = 17/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N +   L +A     A    D      F+ +       +  LC  G ++EA
Sbjct: 265 GCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEA 324

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL-YHDLIESGY---------LIQ 207
               SK+           +N+ + G +   R +    L Y +++ +G+         +I 
Sbjct: 325 RAMLSKIPNPNTV----LYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMID 380

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G +    E L ++++ G  P    +  LI  FC++ +F   S+++++M A+  + 
Sbjct: 381 GLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSL 440

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   Y  +I  LCK  K  +A +++ ++  +G  PD   + ++I+GLCK   + +A  ++
Sbjct: 441 NTVGYNCLIGALCKDGKIQDALQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLY 500

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ +G++ N  TYN++IH + R++ +++A +L  EM  +G     +TYN LI  LC  
Sbjct: 501 RDMLLEGVIANTVTYNTLIHAFLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKT 560

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T++   L E+M  + IF  + + N LI  +C+ GK+
Sbjct: 561 GATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKV 598



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/232 (34%), Positives = 122/232 (52%), Gaps = 11/232 (4%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G +++AFC   +V     LLR + + G VP +  +  LI    E        +LL  M  
Sbjct: 204 GVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFL 263

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T+ +VI+GLCK+ +  EA ++ + +  R +  D ++   ++HGLC+MG + +
Sbjct: 264 MGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDE 323

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR-LHKEMLDKGYGETTVTYNTLI 381
           AR M  ++ +    PN   YN++I+GY      EEAK  L+K M+  G+     T+N +I
Sbjct: 324 ARAMLSKIPN----PNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIAGFEPDAFTFNIMI 379

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG------KIVN 427
            GLC  G    A    +EM +KG   +VITY  LI G+CK+G      K+VN
Sbjct: 380 DGLCKKGYLVSALEFLDEMVKKGFEPNVITYTILIDGFCKQGHFEEASKVVN 431



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 126/298 (42%), Gaps = 47/298 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++++  +L D   +   F+ A   ++S    G S N       I  LC+ G I++A
Sbjct: 402 GFEPNVITYTILIDGFCKQGHFEEASKVVNSMSAKGLSLNTVGYNCLIGALCKDGKIQDA 461

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
              + ++   G    I T+NS + G  K D+ +    LY D++  G              
Sbjct: 462 LQMYGEMSSKGCKPDIYTFNSLIYGLCKNDKMEEALGLYRDMLLEGVIANTVTYNTLIHA 521

Query: 205 -------------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          LI+A C  G   +   L+ Q+  + + P 
Sbjct: 522 FLRLELIQQADKLVGEMRFRGCPLDNITYNGLIKALCKTGATEKCLGLIEQMFGEEIFPS 581

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             + N LI+ FC         + L  M+ R   PD  TY  +INGLCK  +  EA  +FN
Sbjct: 582 INSCNILINSFCRTGKVNDALQFLRDMIQRGLTPDIVTYNSLINGLCKMGRFQEALNLFN 641

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            L+ +G  PD V Y T+I   C  G   DA ++ F+ +  G +PNE T++ +I+ + +
Sbjct: 642 GLQAKGIHPDAVTYNTLISRYCYEGLFNDACQLLFKGVSNGFIPNEITWSILINYFVK 699



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 100/204 (49%), Gaps = 5/204 (2%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +L  G+ P    F  ++  FC          LL  M      P++  Y+ +I+ L ++ +
Sbjct: 191 MLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLRDMTKHGCVPNSIIYQMLIHALSENNR 250

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             EA ++  ++   G  PD   +  VIHGLCK G + +A K+   M+ +    +      
Sbjct: 251 VNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAGRIHEAAKLHDRMLLRDFTADALIQGY 310

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH-LFEEMAQK 403
           ++HG CR+  ++EA    + ML K     TV YNTLI G  + GR +EA   L++ M   
Sbjct: 311 LMHGLCRMGKVDEA----RAMLSKIPNPNTVLYNTLINGYVVSGRFEEAKDLLYKNMVIA 366

Query: 404 GIFRDVITYNTLIQGYCKEGKIVN 427
           G   D  T+N +I G CK+G +V+
Sbjct: 367 GFEPDAFTFNIMIDGLCKKGYLVS 390



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 93/191 (48%), Gaps = 8/191 (4%)

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           N     L++  C K        + + M++R  +P  +T+  V+   C   +   A  +  
Sbjct: 169 NVVLEILVAGNCPK----VAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDSACSLLR 224

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+ + G VP++++Y  +IH L +   + +A K+  EM   G  P+  T+N +IHG C+  
Sbjct: 225 DMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIHGLCKAG 284

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            + EA +LH  ML + +    +    L+ GLC  G+ DEA  +  ++       + + YN
Sbjct: 285 RIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKVDEARAMLSKIPNP----NTVLYN 340

Query: 414 TLIQGYCKEGK 424
           TLI GY   G+
Sbjct: 341 TLINGYVVSGR 351



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 97/223 (43%), Gaps = 3/223 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF-GRVSELLHTMVAR 263
           LI    N G+     +LL+Q+ ++G V + + F  LI R+  K    G+ + LL  M   
Sbjct: 100 LIDKLGNVGEFKMIDKLLKQMKDEGCVFKESLF-ILIMRYYGKAGLPGQATRLLLDMWGV 158

Query: 264 NRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
                 F +Y  V+  L        A  VF D+  RG  P    +  V+   C +  +  
Sbjct: 159 YCFEPTFKSYNVVLEILVAGNCPKVAPNVFYDMLSRGISPTVYTFGVVMKAFCMVNEVDS 218

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  +M   G +PN   Y  +IH     + + EA +L +EM   G      T+N +I 
Sbjct: 219 ACSLLRDMTKHGCVPNSIIYQMLIHALSENNRVNEAMKLLEEMFLMGCEPDVQTFNDVIH 278

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC  GR  EA  L + M  +    D +    L+ G C+ GK+
Sbjct: 279 GLCKAGRIHEAAKLHDRMLLRDFTADALIQGYLMHGLCRMGKV 321



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 66/157 (42%), Gaps = 9/157 (5%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I+ LC++G  E+      ++    +F SI + N  +    +  + +   +   D+I+ G 
Sbjct: 554 IKALCKTGATEKCLGLIEQMFGEEIFPSINSCNILINSFCRTGKVNDALQFLRDMIQRGL 613

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C  G+  E   L   +   G+ P+   +N LISR+C +  F    +
Sbjct: 614 TPDIVTYNSLINGLCKMGRFQEALNLFNGLQAKGIHPDAVTYNTLISRYCYEGLFNDACQ 673

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           LL   V+    P+  T+  +IN   K+    E + + 
Sbjct: 674 LLFKGVSNGFIPNEITWSILINYFVKNNSDSEQFTIL 710


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 165/343 (48%), Gaps = 13/343 (3%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           Q L  H    P+L   N+L  SL +A     AM        SP+  +L + I   CE  L
Sbjct: 28  QMLERHC--VPNLRDINLLLASLCQAGTMDQAMAIFRGIQCSPSVITLNILINGFCELQL 85

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGC-IKIDRTDLVWKLYH-------DLIESGYL 205
           +++A   F ++++        T  +A++ C  K+DR D   +L         D+I    +
Sbjct: 86  LDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSV 145

Query: 206 IQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            + FC   +V E Y+LL  ++E     P+  A+N +I  FC+        E+L T+V+  
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMG 205

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY--VPDTVMYTTVIHGLCKMGWLGD 322
             P+  TY  +I+G CKS    EA ++F  L  R +   P+ V +  +I GLCK   L  
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  +M  + L  + +TY +++ G C+     E  R+ +EML +G   + VTY TL+ 
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVH 325

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             C  G   +A  +   M  KGI  DV TY  L++G  + GK+
Sbjct: 326 AHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKV 368



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 152/333 (45%), Gaps = 43/333 (12%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I  LC++G + EA   ++++ E     +++  N  L    +    D    +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 196 YH------DLIESGYLIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKK 248
           +        +I    LI  FC    + +  EL  ++ ++  LVPE T +  +I  +C+  
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 249 NFGRVSELLH------------TMVAR----------------------NRAPDNFTYEE 274
              +  +LL             T VAR                      +  PD   +  
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G CK+ +  EAY +   L   G VP+ V YTT+I G CK G L +A +++  +  + 
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRD 240

Query: 335 --LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
               PN  T+N++I G C+ D LE A  L K+M  +     T TY TL+ GLC  GRT E
Sbjct: 241 HHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSE 300

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +FEEM ++G    V+TY TL+  +CK G +
Sbjct: 301 VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSL 333



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 151/380 (39%), Gaps = 67/380 (17%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLELYIQCLCESG------ 152
           SP +++ N+L +   E +    A++            P   +    I+C C+        
Sbjct: 67  SPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQAR 126

Query: 153 -LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--------- 202
            L+EE+ C  S          +    S   G  K  R D  ++L  D++E          
Sbjct: 127 QLLEESSCCSS---------DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVA 177

Query: 203 -GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS------- 254
              +I  FC  G+V E YE+L  ++  G VP    +  LI  FC+  N            
Sbjct: 178 WNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLS 237

Query: 255 ------------------------------ELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
                                         EL+  M AR+   D FTY  +++GLCK  +
Sbjct: 238 SRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGR 297

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             E  RVF ++   G  P  V YTT++H  CK G L DA+++   M+ KG+ P+  TY  
Sbjct: 298 TSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTV 357

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++ G      +  A    +++L +      V Y+ L+ G C     DEA   + EM  + 
Sbjct: 358 LLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRR 417

Query: 405 IFRDVITYNTLIQGYCKEGK 424
           +  D  T   L++  CK G+
Sbjct: 418 LAPDPATCKLLVEMLCKRGR 437


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +  H    PD+V+ ++L  SL +    K A D  D+    G +P+  S  + +
Sbjct: 308 AVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK------LY 196
                 G + +    F  +   G+     T+N    A   C  +D+  +++       + 
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    +I A C  GK+ +  E   Q+++ G+ P+  A+N LI  FC   +  +  EL
Sbjct: 427 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL 486

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  PD V+Y+ ++ G C 
Sbjct: 487 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCL 546

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN   Y ++++GYC+I  ++E   L +EML +G   +T+ 
Sbjct: 547 VGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL 606

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y+ +I GL   GRT  A   F EM + GI  D+ TYN +++G  K
Sbjct: 607 YSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFK 651



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/374 (27%), Positives = 169/374 (45%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PDLV+ N +  +L +ARA   A  FL                       STG     
Sbjct: 249 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS---- 178
                        P+  +L + +  LC+ G I+EA   F  +   G    + ++N     
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 368

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I   +     LI+A+ N G + +   +  ++ + G+ P
Sbjct: 369 YATKGCL-VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +  +I+  C         E  + M+ +  APD + Y  +I G C     L+A  + 
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELI 487

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++   G   D V ++++I+ LCK+G + DA+ ++   ++ GL P+   Y+ ++ GYC +
Sbjct: 488 SEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLV 547

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM Q+GI    I Y
Sbjct: 548 GKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILY 607

Query: 413 NTLIQGYCKEGKIV 426
           + +I G  + G+ V
Sbjct: 608 SIIIDGLFQAGRTV 621



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 161/355 (45%), Gaps = 18/355 (5%)

Query: 88  LSIRFF-QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLE 142
           L++ FF Q L +  G   +++  N L +   EA+    A+D L       G  P+  S  
Sbjct: 129 LALAFFGQLLRT--GLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYS 186

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           + ++ LC+ G   +A      + E G   S  +  +N+ + G  K    +    L+ +++
Sbjct: 187 ILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV 246

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           + G          ++ A C    + +    LRQ++   ++P N  +N LI  +     + 
Sbjct: 247 QRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWK 306

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               +   M   +  PD  T   ++  LCK  K  EA  VF+ +  +G  PD   Y  ++
Sbjct: 307 EAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           +G    G L D   ++  M+  G+ P+ YT+N +I  Y     L++A  +  EM D G  
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              VTY T+IA LC  G+ D+A   F +M  +G+  D   YN LIQG+C  G ++
Sbjct: 427 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 481



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 132/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 121 CTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVP 180

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  +++ L+   C++   G+  +LL  M       +P+   Y  VI+G  K     +A  
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 240

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y +V+H LCK   +  A     +M++K +LPN +TYN++I+GY 
Sbjct: 241 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 300

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM         VT + L+  LC +G+  EA  +F+ MA KG   DV 
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 411 TYNTLIQGYCKEGKIVN 427
           +YN ++ GY  +G +V+
Sbjct: 361 SYNIMLNGYATKGCLVD 377



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 164/335 (48%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP++V+ N + D   +      A D        G  P+  +    +  LC++  +++A  
Sbjct: 216 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 275

Query: 160 AFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQAFC 210
              ++    V  +  T+N+ + G          +++ +      +  D++    L+ + C
Sbjct: 276 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 335

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK+ E  ++   +   G  P+  ++N +++ +  K     +++L   M+    APD +
Sbjct: 336 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 395

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +I          +A  +FN++++ G  PD V Y TVI  LC++G + DA + + +M
Sbjct: 396 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 455

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I +G+ P++Y YN +I G+C   +L +AK L  E+++ G     V ++++I  LC  GR 
Sbjct: 456 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 515

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +A ++F+     G+  D + Y+ L+ GYC  GK+
Sbjct: 516 MDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKM 550



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 161/372 (43%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+ S N++ +            D  D     G +P+  +  + I+     G++++A
Sbjct: 354 GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 413

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++++ GV   + T+ + +    +I + D   + ++ +I+ G          LIQ 
Sbjct: 414 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 473

Query: 209 FCNDGKVSEGYELLRQVLEDG-----------------------------------LVPE 233
           FC  G + +  EL+ +++ +G                                   L P+
Sbjct: 474 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 533

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              ++ L+  +C      +   +   MV+    P+   Y  ++NG CK  +  E   +F 
Sbjct: 534 AVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGYCKIGRIDEGLSLFR 593

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ +RG  P T++Y+ +I GL + G    A+  + EM   G+  +  TYN ++ G  +  
Sbjct: 594 EMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYNIVLRGLFKNR 653

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             +EA  L KE+         +T NT+I G+    R +EA  LF  +++  +   V+TY+
Sbjct: 654 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYS 713

Query: 414 TLIQGYCKEGKI 425
            +I    KEG +
Sbjct: 714 IMITNLIKEGLV 725



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 103/234 (44%), Gaps = 9/234 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G + +A   F     +G+      ++  + G   + + +   +++  ++ +G 
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 565

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G++ EG  L R++L+ G+ P    ++ +I    +         
Sbjct: 566 EPNVVVYCTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKV 625

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             H M     A D  TY  V+ GL K+R   EA  +F +L+      + +   T+I G+ 
Sbjct: 626 KFHEMTESGIAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMF 685

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +   + +A+ ++  +    L+P+  TY+ MI    +   +EEA+ +   M + G
Sbjct: 686 QTRRVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  +TY  ++    R    E A     ++L  G     +  N L+ G C   RTDEA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 166

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +Y+ L++  C +GK
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGK 197


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG I +A   F   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 73  ITAYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L+S +    +      
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  EA  +FN++ + G VP+ V +TT+I G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +++ +G  P+  TYN++I G C+  +L++A+ L  EM  K      +
Sbjct: 253 KNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKELKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364


>gi|413939576|gb|AFW74127.1| hypothetical protein ZEAMMB73_460696 [Zea mays]
          Length = 581

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/467 (23%), Positives = 188/467 (40%), Gaps = 70/467 (14%)

Query: 4   APFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLS 63
           A  +VL +L  +PR+       LR+LS+    S  L          +    P W   +L+
Sbjct: 64  ASLAVLRLLAPHPRHHTAARALLRDLSLRHPLSSPLLLPSLLAGPHV----PSWLVLVLA 119

Query: 64  DIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
              S   +D                ++R F  + +  G +PD  +C  L  +L  AR   
Sbjct: 120 Q--SARPHD----------------AVRVFDHMRAR-GLAPDAHACTALLTALARARMTA 160

Query: 124 VA--------------------------------------MDFLDSTGFSPNPNSLELYI 145
            A                                      +  +D+ G + +  S    I
Sbjct: 161 TARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVI 220

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--- 202
              C  G+  EA CA  ++ + G+     TWNS++ G  K  R     +L+ +++ +   
Sbjct: 221 ALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQAT 280

Query: 203 ------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C  G V E  +L  ++   G++P    +N ++ + CE  N   V  L
Sbjct: 281 PDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNMKEVHRL 340

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           LH M  R    D+ T   +IN  CK      A +V   + E G   +   Y  +IHG CK
Sbjct: 341 LHEMDGRKVQADHVTCNTLINAYCKRGDMTSACKVKKKMMESGLQLNHFTYKALIHGFCK 400

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              L  A++ +F+M+  G  PN   ++ ++ G+C+ +N +    +  E++ +G       
Sbjct: 401 ARELDGAKEAFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLAIPDELMKRGLPPDKAV 460

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           Y +LI  LC  G  D+A  +F++M  KG+  D + Y TL   Y  +G
Sbjct: 461 YRSLIRRLCRKGLVDQAQRVFDQMQSKGLVGDSLVYATLAYTYLTKG 507



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 104/223 (46%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A       +    +  ++   GL      +N ++    +  +  +   ++  M A  
Sbjct: 149 LLTALARARMTATARRVFDEMARAGLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAG 208

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D F+Y  VI   C+     EA    + + + G  PDTV + + IHGLCK G + +A 
Sbjct: 209 VTLDRFSYNTVIALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAA 268

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ EM+     P+  TY ++I GYCR  N+EEA +L   M   G      TYN ++  L
Sbjct: 269 QLFTEMVAAQATPDNVTYTTLIDGYCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKL 328

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C  G   E + L  EM  + +  D +T NTLI  YCK G + +
Sbjct: 329 CEDGNMKEVHRLLHEMDGRKVQADHVTCNTLINAYCKRGDMTS 371



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 80/166 (48%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M AR  APD      ++  L ++R    A RVF+++   G    T +Y  ++H   K G 
Sbjct: 134 MRARGLAPDAHACTALLTALARARMTATARRVFDEMARAGLAATTHVYNAMLHVCLKAGD 193

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              A  +   M   G+  + ++YN++I  YCR     EA      M  +G    TVT+N+
Sbjct: 194 AAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEAMCARDRMDKEGIRPDTVTWNS 253

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            I GLC  GR  EA  LF EM       D +TY TLI GYC+ G +
Sbjct: 254 SIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDGYCRAGNV 299



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/222 (24%), Positives = 92/222 (41%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +L+       +  +   +   +   GL P+  A   L++     +       +   M   
Sbjct: 113 WLVLVLAQSARPHDAVRVFDHMRARGLAPDAHACTALLTALARARMTATARRVFDEMARA 172

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             A     Y  +++   K+    +A  +   +   G   D   Y TVI   C+ G   +A
Sbjct: 173 GLAATTHVYNAMLHVCLKAGDAAQAEAIVTRMDAAGVTLDRFSYNTVIALYCRKGMGYEA 232

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
                 M  +G+ P+  T+NS IHG C+   ++EA +L  EM+        VTY TLI G
Sbjct: 233 MCARDRMDKEGIRPDTVTWNSSIHGLCKEGRVKEAAQLFTEMVAAQATPDNVTYTTLIDG 292

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  G  +EA  L   M   G+   V TYN +++  C++G +
Sbjct: 293 YCRAGNVEEAVKLRGRMEAAGMLPGVATYNAILRKLCEDGNM 334


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/347 (29%), Positives = 172/347 (49%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           + LH H      GF  + VS   L + + +    + A+  L   D     PN       I
Sbjct: 395 KALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTII 454

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CI--KIDRT-----DLVWKLYH 197
             LC+  L+ EA+  FS++   G+   + T+++ + G CI  K+        ++V K  +
Sbjct: 455 DALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTIN 514

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D+     L+ A   +GKV E   +L  +L+  + P+   +N L++ +       +   +
Sbjct: 515 PDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHV 574

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M      PD  TY  +ING CKS+   EA  +F ++ ++  VPDTV Y++++ GLCK
Sbjct: 575 FNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCK 634

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +     +  EM  +G   +  TYNS+I G C+  +L++A  L  +M D+G    T T
Sbjct: 635 SGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFT 694

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  L+ GLC  GR  +A  +F+++  KG   DV  YN +I G+CK+G
Sbjct: 695 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQG 741



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P  V+ N L   L      K A+ F D   + GF  N  S    I  +C+ G    A
Sbjct: 372 GYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 431

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+       +++ +++ +    K       + L+          D++    LI  
Sbjct: 432 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 491

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ E   LL +++   + P+   +  L+    ++        +L  M+     PD
Sbjct: 492 FCIVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPD 551

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  ++NG     +  +A  VFN +   G  PD   YT +I+G CK   + +A  ++ 
Sbjct: 552 VFTYNTLMNGYLLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKSKMVDEALNLFK 611

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K ++P+  TY+S++ G C+   +     L  EM D+G     +TYN+LI GLC +G
Sbjct: 612 EMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNG 671

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D+A  LF +M  +GI  +  T+  L+ G CK G++
Sbjct: 672 HLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRL 708



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 158/337 (46%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S ++V+ + L          K A+  L+       +PN  +  + +  LC+ G ++EA
Sbjct: 163 GISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEA 222

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
               + + +  V  ++ T+++ + G   +        +++         D+     +I  
Sbjct: 223 KSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMING 282

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   +V +   L ++++     P    FNK++  F + K++     L H +  +   PD
Sbjct: 283 FCKIKRVDKALNLFKEMILSRF-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPD 341

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT   +IN  C   +    + V   + +RGY P TV   T+I GLC  G +  A     
Sbjct: 342 LFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHD 401

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ +G   N+ +Y ++I+G C+I +   A +L +++  +        Y+T+I  LC + 
Sbjct: 402 KLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQ 461

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EAY LF EM  KGI  DV+TY+TLI G+C  GK+
Sbjct: 462 LVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKL 498



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 143/299 (47%), Gaps = 16/299 (5%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+ +S  + I   C+   +++A   F ++  +  F  I  +N  L    K+      
Sbjct: 268 GVTPDVHSYNIMINGFCKIKRVDKALNLFKEM-ILSRFPPIIQFNKILDSFAKMKHYSTA 326

Query: 193 WKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L H         DL     LI  FC+ G+++ G+ +L ++L+ G  P     N LI  
Sbjct: 327 VSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKG 386

Query: 244 FCEKKNFGRVSELLH---TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
            C K   G+V + LH    ++A+    +  +Y  +ING+CK      A ++   +  R  
Sbjct: 387 LCLK---GQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLT 443

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+  MY+T+I  LCK   + +A  ++ EM  KG+  +  TY+++I+G+C +  L+EA  
Sbjct: 444 KPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIG 503

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           L  EM+ K       TY  L+  L   G+  EA  +   M +  +  DV TYNTL+ GY
Sbjct: 504 LLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGY 562



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 179/392 (45%), Gaps = 29/392 (7%)

Query: 36  SQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQW 95
           +Q  Y  +   VCKI  T  R    LL  I      D    +  ++  + ++ ++  +Q 
Sbjct: 411 NQVSYATLINGVCKIGDT--RGAIKLLRKI------DGRLTKPNVEMYSTIIDALCKYQL 462

Query: 96  LHSHYGF---------SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLEL 143
           +   YG          S D+V+ + L          K A+  L+       +P+  +  +
Sbjct: 463 VSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYTI 522

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            +  L + G ++EA    + + +  V   + T+N+ + G + +        +++ +   G
Sbjct: 523 LVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLMG 582

Query: 204 Y---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     LI  FC    V E   L +++ +  +VP+   ++ L+   C+      V 
Sbjct: 583 VTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVW 642

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +L+  M  R +  D  TY  +I+GLCK+    +A  +FN +K++G  P+T  +T ++ GL
Sbjct: 643 DLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFTFTILLDGL 702

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G L DA++++ +++ KG   + Y YN MI+G+C+   LEEA  +  +M + G     
Sbjct: 703 CKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNA 762

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           VT++ +I  L      D+A  L  +M  +G+ 
Sbjct: 763 VTFDIIINALFKKDENDKAEKLLRQMIARGLL 794



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 131/280 (46%), Gaps = 8/280 (2%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------L 205
           +++A   F+ +  MGV   + ++N  + G  KI R D    L+ ++I S +        +
Sbjct: 254 VKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMILSRFPPIIQFNKI 313

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + +F      S    L  ++   G+ P+    N LI+ FC          +L  ++ R  
Sbjct: 314 LDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGY 373

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   T   +I GLC   +  +A    + L  +G+  + V Y T+I+G+CK+G    A K
Sbjct: 374 PPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIK 433

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  ++  +   PN   Y+++I   C+   + EA  L  EM  KG     VTY+TLI G C
Sbjct: 434 LLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFC 493

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + G+  EA  L  EM  K I  DV TY  L+    KEGK+
Sbjct: 494 IVGKLKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKV 533



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 113/228 (49%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D +    LI+  C  G+V E      ++L  G      ++  LI+  C   +     + L
Sbjct: 62  DTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRAAIKFL 121

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             +  R   P+   Y  +I+ LCK +   EAY +F+++  +G   + V Y+T+I+G C +
Sbjct: 122 RKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIV 181

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G L +A  +   M+ K + PN  TYN ++   C+   ++EAK +   ML        +TY
Sbjct: 182 GKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITY 241

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +TL+ G  L     +A H+F  M+  G+  DV +YN +I G+CK  ++
Sbjct: 242 STLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRV 289



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/203 (32%), Positives = 104/203 (51%), Gaps = 6/203 (2%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH---TMVARNRAPDNFTYEEVI 276
            +L ++L+ G  P+    N LI   C K   G+V E LH    ++A+    +  +Y  +I
Sbjct: 49  SVLTKILKRGYPPDTVTLNTLIKGLCLK---GQVKEALHFHDKLLAQGFQLNQVSYATLI 105

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG+C+      A +    +  R   P+  MY T+I  LCK   + +A  ++ EM  KG+ 
Sbjct: 106 NGVCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGIS 165

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            N  TY+++I+G+C +  L+EA  L   M+ K       TYN L+  LC  G+  EA  +
Sbjct: 166 ANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSV 225

Query: 397 FEEMAQKGIFRDVITYNTLIQGY 419
              M +  +  +VITY+TL+ GY
Sbjct: 226 LAVMLKACVKSNVITYSTLMDGY 248



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 60/171 (35%), Positives = 87/171 (50%)

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            +L  ++ R   PD  T   +I GLC   +  EA    + L  +G+  + V Y T+I+G+
Sbjct: 49  SVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGV 108

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C++G    A K   ++  +   PN   YN++I   C+   + EA  L  EM  KG     
Sbjct: 109 CRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANV 168

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           VTY+TLI G C+ G+  EA  L   M  K I  +V TYN L+   CKEGK+
Sbjct: 169 VTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKV 219


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/331 (28%), Positives = 158/331 (47%), Gaps = 19/331 (5%)

Query: 110 NVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N +  SLV+ + +   +      +  G +P+  +L + I C C    I  AF  F+ + +
Sbjct: 62  NNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILK 121

Query: 167 MGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES----------GYLIQAFCNDGKV 215
            G      T N+ + G C + +    ++  +HD + +          G LI   C  G+ 
Sbjct: 122 RGFHPDAITLNTLIKGLCFRGEIKKTLY--FHDQVVAQGFQLDQVSYGTLINGLCKAGET 179

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                LLR++    + P+   +N +I+  C+ K  G   ++   M+ +  +PD  TY  +
Sbjct: 180 KAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTL 239

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG---WLGDARKMWFEMIH 332
           I+G C   K  EA+ + N++K +   PD   ++ +I  L K G    + +A  ++ EM H
Sbjct: 240 IHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKH 299

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           K ++P+  TYNS+I G C+  +LE A  L KEM + G      +Y  L+ GLC  GR + 
Sbjct: 300 KNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEI 359

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           A   F+ +  KG   +V  YN +I G CK G
Sbjct: 360 AKEFFQHLLVKGCHLNVWPYNVMINGLCKAG 390



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 165/367 (44%), Gaps = 21/367 (5%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----A 121
           P+F FN+ L     L +       I  F+    + G +PDL + ++L +          A
Sbjct: 57  PTFLFNNIL---SSLVKNKRYPTVISLFKQFEPN-GITPDLCTLSILINCFCHQAHITLA 112

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F V  + L   GF P+  +L   I+ LC  G I++      ++   G      ++ + + 
Sbjct: 113 FSVFANILKR-GFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLIN 171

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K   T  V +L           D++    +I + C +  + +  ++  +++  G+ P
Sbjct: 172 GLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISP 231

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL---EAY 289
           +   +  LI  FC          LL+ M  +N  PD +T+  +I+ L K  K+    EA 
Sbjct: 232 DVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAM 291

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F ++K +  +PD V Y ++I GLCK   L  A  +  EM   G+ P+ Y+Y  ++ G 
Sbjct: 292 SLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGL 351

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   LE AK   + +L KG       YN +I GLC  G   EA  L  +M  KG   + 
Sbjct: 352 CKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNA 411

Query: 410 ITYNTLI 416
           IT+ T+I
Sbjct: 412 ITFRTII 418



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 15/323 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD ++ N L   L      K  + F D   + GF  +  S    I  LC++G  +  
Sbjct: 123 GFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAV 182

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                KL+   V   +  +N+ +    K         +Y ++I  G          LI  
Sbjct: 183 ARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHG 242

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE---KKNFGRVSELLHTMVARNR 265
           FC  GK+ E + LL ++    + P+   F+ LI    +   KK       L   M  +N 
Sbjct: 243 FCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNM 302

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+GLCK+     A  +  ++KE G  PD   YT ++ GLCK G L  A++
Sbjct: 303 IPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKGGRLEIAKE 362

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            +  ++ KG   N + YN MI+G C+     EA  L  +M  KG     +T+ T+I  L 
Sbjct: 363 FFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALS 422

Query: 386 LHGRTDEAYHLFEEMAQKGIFRD 408
                D+A  +  EM  +G+ ++
Sbjct: 423 EKDENDKAEKILREMIARGLLKE 445



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 2/206 (0%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            L +Q   +G+ P+    + LI+ FC + +      +   ++ R   PD  T   +I GL
Sbjct: 79  SLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGL 138

Query: 280 CKSRKRLEAYRVFND-LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           C  R  ++    F+D +  +G+  D V Y T+I+GLCK G      ++  ++    + P+
Sbjct: 139 C-FRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCKAGETKAVARLLRKLEGHSVKPD 197

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YN++I+  C+   L +A  ++ EM+ KG     VTY TLI G C+ G+  EA+ L  
Sbjct: 198 VVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLN 257

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGK 424
           EM  K I  DV T++ LI    KEGK
Sbjct: 258 EMKLKNINPDVYTFSVLIDALGKEGK 283



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 93/194 (47%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FN ++S   + K +  V  L          PD  T   +IN  C       A+ V
Sbjct: 56  PPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAHITLAFSV 115

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F ++ +RG+ PD +   T+I GLC  G +        +++ +G   ++ +Y ++I+G C+
Sbjct: 116 FANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGTLINGLCK 175

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               +   RL +++         V YNT+I  LC +    +A  ++ EM  KGI  DV+T
Sbjct: 176 AGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVT 235

Query: 412 YNTLIQGYCKEGKI 425
           Y TLI G+C  GK+
Sbjct: 236 YTTLIHGFCIMGKM 249



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 76/162 (46%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P  F +  +++ L K+++      +F   +  G  PD    + +I+  C    
Sbjct: 49  MLLMRPPPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSILINCFCHQAH 108

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A  ++  ++ +G  P+  T N++I G C    +++    H +++ +G+    V+Y T
Sbjct: 109 ITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQGFQLDQVSYGT 168

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           LI GLC  G T     L  ++    +  DV+ YNT+I   CK
Sbjct: 169 LINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCK 210


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 174/392 (44%), Gaps = 41/392 (10%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFN---FNDPL--FFREFLKQQNNVLLSIRFFQ 94
           Y  +   +CK  R      Q LLS +P  N   FN  +  F R     +    +  +   
Sbjct: 318 YGYLMHGLCKTCRIDE--AQALLSKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMI- 374

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCES 151
               + G+ PD+ + + L + L +   F  A++    +D+ G  PN N+  + I   C+ 
Sbjct: 375 ----NNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKK 430

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
           G +EEA     ++   G   +   +N+                          LI A C 
Sbjct: 431 GQLEEAGLILREMLTKGFSLNTVGYNA--------------------------LISALCK 464

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+ E  ++  ++   G  P+   FN LI   C          L   MV      ++ T
Sbjct: 465 HGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVT 524

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I+   +  +  EA ++ ND+  RG   D + Y  +I  LCK G +     ++ EMI
Sbjct: 525 FNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMI 584

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  T N +I+G+C    +  A    ++M+ +G+    VTYN+LI GLC  GR  
Sbjct: 585 RKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQ 644

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EA +LFE++  +GI  D ITYNTLI   C+EG
Sbjct: 645 EALNLFEKLQAEGIQPDSITYNTLICWLCREG 676



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 152/305 (49%), Gaps = 14/305 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF+PN  +    +  LC++  I+EA    SK+    V      +N+ + G ++  R +  
Sbjct: 310 GFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVV----HFNTLVNGFVRNGRLNEA 365

Query: 193 WKLYHD-LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
               +D +I +GY         L+   C  G      EL+  +   G  P    +  LI 
Sbjct: 366 TAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILID 425

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC+K        +L  M+ +  + +   Y  +I+ LCK  K  EA  +F ++  +G  P
Sbjct: 426 GFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKP 485

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   + ++I GLC++  + DA  ++ +M+ +G++ N  T+N++IH + R   ++EA +L 
Sbjct: 486 DIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLV 545

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            +ML +G     +TYN LI  LC  G  ++   LFEEM +KG+   +IT N LI G+C  
Sbjct: 546 NDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTA 605

Query: 423 GKIVN 427
           GK+ N
Sbjct: 606 GKVHN 610



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 150/329 (45%), Gaps = 34/329 (10%)

Query: 103 SPDLVSCNVLFDSLV------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
            P++V  N L +  V      EA AF    D + + G+ P+  +    +  LC+ GL   
Sbjct: 343 GPNVVHFNTLVNGFVRNGRLNEATAF--VYDKMINNGYVPDVFTFSTLVNGLCKKGLFGS 400

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A    + +   G   ++ T+                            LI  FC  G++ 
Sbjct: 401 ALELVNDMDAKGCKPNLNTYT--------------------------ILIDGFCKKGQLE 434

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   +LR++L  G       +N LIS  C+        ++   M ++   PD FT+  +I
Sbjct: 435 EAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLI 494

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            GLC+  +  +A  ++ D+   G + ++V + T+IH   + G + +A K+  +M+ +G  
Sbjct: 495 FGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCP 554

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
            +E TYN +I   C+   +E+   L +EM+ KG   + +T N LI G C  G+   A   
Sbjct: 555 LDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEF 614

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +M  +G   D++TYN+LI G CK G+I
Sbjct: 615 MRDMIHRGFSPDIVTYNSLINGLCKRGRI 643



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 125/303 (41%), Gaps = 47/303 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L +  +L D   +    + A   L    + GFS N       I  LC+ G I EA
Sbjct: 412 GCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEA 471

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
              F ++   G    I T+NS + G  ++D  +    LY D++  G              
Sbjct: 472 LDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHA 531

Query: 205 -------------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          LI+A C  G V +G  L  +++  GL P 
Sbjct: 532 FLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPS 591

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
               N LI+ FC         E +  M+ R  +PD  TY  +INGLCK  +  EA  +F 
Sbjct: 592 IITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFE 651

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            L+  G  PD++ Y T+I  LC+ G   DA  + +  +  G +PN+ T+N +++ + +  
Sbjct: 652 KLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVENGFVPNDVTWNILVYNFGKQS 711

Query: 354 NLE 356
           N E
Sbjct: 712 NSE 714



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 158/358 (44%), Gaps = 27/358 (7%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SFN   P    + L+   +V  S+  F+W  +  G+        +L D L  A  FKV  
Sbjct: 65  SFNKITPFQLCKLLELPLDVETSMEIFKWAGAQKGYCHSFSVYYLLIDKLGAAAGFKVI- 123

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
                       + L L ++   E G++         +K  G  G        LL    +
Sbjct: 124 ------------DRLLLQMK---EEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGV 168

Query: 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +  ++ Y+ +++   L+   C     +  Y++L +    G+ P +  F  ++   C 
Sbjct: 169 YCCEPSFRSYNVVLD--VLVVGNCPSVASNVFYDMLSK----GVSPNDYTFGLVMKALCM 222

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    LL  M      P++  Y+ +I+ L K  +  EA ++  ++   G  PD   
Sbjct: 223 VNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNT 282

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           + TVI+G C++  + +  K+   MI KG  PN+ TY  ++HG C+   ++EA+ L    L
Sbjct: 283 FNTVIYGFCRLNRVLEGAKLVDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQAL----L 338

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEA-YHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            K  G   V +NTL+ G   +GR +EA   ++++M   G   DV T++TL+ G CK+G
Sbjct: 339 SKVPGPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKG 396



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/173 (29%), Positives = 98/173 (56%), Gaps = 4/173 (2%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
            S + + M+++  +P+++T+  V+  LC   +   A  +  D+ + G VP++++Y T+I 
Sbjct: 194 ASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLID 253

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            L K   + +A K+  EM   G  P+  T+N++I+G+CR++ + E  +L   M+ KG+  
Sbjct: 254 ALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTP 313

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +TY  L+ GLC   R DEA  L  ++       +V+ +NTL+ G+ + G++
Sbjct: 314 NDMTYGYLMHGLCKTCRIDEAQALLSKVPGP----NVVHFNTLVNGFVRNGRL 362



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 1/206 (0%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF-TYEEVINGL 279
           LL Q+ E+G+V   + F  ++  +      G+ + LL  M        +F +Y  V++ L
Sbjct: 126 LLLQMKEEGIVFRESLFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVL 185

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
                   A  VF D+  +G  P+   +  V+  LC +  + +A  +  +M   G +PN 
Sbjct: 186 VVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNS 245

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
             Y ++I    + D ++EA +L +EM   G      T+NT+I G C   R  E   L + 
Sbjct: 246 MIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDR 305

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M  KG   + +TY  L+ G CK  +I
Sbjct: 306 MILKGFTPNDMTYGYLMHGLCKTCRI 331



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 9/145 (6%)

Query: 287 EAYRVFNDLK-----ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
           +A R+  D+K     E  +    V+   ++ G C       A  ++++M+ KG+ PN+YT
Sbjct: 157 QATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCP----SVASNVFYDMLSKGVSPNDYT 212

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           +  ++   C ++ ++ A  L ++M   G    ++ Y TLI  L    R DEA  L EEM 
Sbjct: 213 FGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMF 272

Query: 402 QKGIFRDVITYNTLIQGYCKEGKIV 426
             G   DV T+NT+I G+C+  +++
Sbjct: 273 LMGCPPDVNTFNTVIYGFCRLNRVL 297


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 170/345 (49%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +  H    PD+V+ ++L  SL +    K A D  D+    G +P+  S  + +
Sbjct: 311 AVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 369

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK------LY 196
                 G + +    F  +   G+     T+N    A   C  +D+  +++       + 
Sbjct: 370 NGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 429

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    +I A C  GK+ +  E   Q+++ G+ P+  A+N LI  FC   +  +  EL
Sbjct: 430 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKEL 489

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  PD V+Y  ++ G C 
Sbjct: 490 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCL 549

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN   Y ++++GYC+I  ++E   L +EML +G   +T+ 
Sbjct: 550 VGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTIL 609

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           Y+ +I GL   GRT  A   F EM + GI  D+ TYN +++G  K
Sbjct: 610 YSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFK 654



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 169/374 (45%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PDLV+ N +  +L +ARA   A  FL                       STG     
Sbjct: 252 GIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEA 311

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS---- 178
                        P+  +L + +  LC+ G I+EA   F  +   G    + ++N     
Sbjct: 312 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 371

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I   +     LI+A+ N G + +   +  ++ + G+ P
Sbjct: 372 YATKGCL-VDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 430

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +  +I+  C         E  + M+ +  APD + Y  +I G C     L+A  + 
Sbjct: 431 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLKAKELI 490

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++   G   D V ++++I+ LCK+G + DA+ ++   ++ GL P+   YN ++ GYC +
Sbjct: 491 SEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLV 550

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM Q+GI    I Y
Sbjct: 551 GKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGIKPSTILY 610

Query: 413 NTLIQGYCKEGKIV 426
           + +I G  + G+ V
Sbjct: 611 SIIIDGLFEAGRTV 624



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 164/335 (48%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP++V+ N + D   +      A D        G  P+  +    +  LC++  +++A  
Sbjct: 219 SPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEA 278

Query: 160 AFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQAFC 210
              ++    V  +  T+N+ + G          +++ +      +  D++    L+ + C
Sbjct: 279 FLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLC 338

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK+ E  ++   +   G  P+  ++N +++ +  K     +++L   M+    APD +
Sbjct: 339 KYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFY 398

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +I          +A  +FN++++ G  PD V Y TVI  LC++G + DA + + +M
Sbjct: 399 TFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQM 458

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I +G+ P++Y YN +I G+C   +L +AK L  E+++ G     V ++++I  LC  GR 
Sbjct: 459 IDQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRV 518

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +A ++F+     G+  D + YN L+ GYC  GK+
Sbjct: 519 MDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKM 553



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 159/354 (44%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   +++  N L +   EA+    A+D L       G  P+  S  +
Sbjct: 132 LALAFFGQLL-RTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 190

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC+ G   +A      + E G   S  +  +N+ + G  K    +    L+ ++++
Sbjct: 191 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 250

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C    + +    LRQ++   ++P N  +N LI  +     +  
Sbjct: 251 RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKE 310

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M   +  PD  T   ++  LCK  K  EA  VF+ +  +G  PD   Y  +++
Sbjct: 311 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 370

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G    G L D   ++  M+  G+ P+ YT+N +I  Y     L++A  +  EM D G   
Sbjct: 371 GYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 430

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VTY T+IA LC  G+ D+A   F +M  +G+  D   YN LIQG+C  G ++
Sbjct: 431 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLL 484



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 132/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 124 CTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVP 183

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  +++ L+   C++   G+  +LL  M       +P+   Y  VI+G  K     +A  
Sbjct: 184 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 243

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y +V+H LCK   +  A     +M++K +LPN +TYN++I+GY 
Sbjct: 244 LFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYS 303

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM         VT + L+  LC +G+  EA  +F+ MA KG   DV 
Sbjct: 304 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 363

Query: 411 TYNTLIQGYCKEGKIVN 427
           +YN ++ GY  +G +V+
Sbjct: 364 SYNIMLNGYATKGCLVD 380



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 161/372 (43%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+ S N++ +            D  D     G +P+  +  + I+     G++++A
Sbjct: 357 GQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKA 416

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++++ GV   + T+ + +    +I + D   + ++ +I+ G          LIQ 
Sbjct: 417 MIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQG 476

Query: 209 FCNDGKVSEGYELLRQVLEDG-----------------------------------LVPE 233
           FC  G + +  EL+ +++ +G                                   L P+
Sbjct: 477 FCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 536

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N L+  +C      +   +   MV+    P+   Y  ++NG CK  +  E   +F 
Sbjct: 537 AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFR 596

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ +RG  P T++Y+ +I GL + G    A+  + EM   G+  +  TYN ++ G  +  
Sbjct: 597 EMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLFKNR 656

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             +EA  L KE+         +T NT+I G+    R +EA  LF  +++  +   V+TY+
Sbjct: 657 CFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVVTYS 716

Query: 414 TLIQGYCKEGKI 425
            +I    KEG +
Sbjct: 717 IMITNLIKEGLV 728



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/291 (21%), Positives = 116/291 (39%), Gaps = 44/291 (15%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G + +A   F     +G+      +N  + G   + + +   +++  ++ +G 
Sbjct: 509 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 568

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G++ EG  L R++L+ G+                         
Sbjct: 569 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQRGI------------------------- 603

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
                      P    Y  +I+GL ++ + + A   F+++ E G   D   Y  V+ GL 
Sbjct: 604 ----------KPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYNIVLRGLF 653

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K     +A  ++ E+    +  N  T N+MI G  +   +EEAK L   +       + V
Sbjct: 654 KNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRSRLVPSVV 713

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           TY+ +I  L   G  +EA  +F  M   G   +    N +++   K+ +IV
Sbjct: 714 TYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNHVVRELLKKNEIV 764



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  +TY  ++    R    E A     ++L  G     +  N L+ G C   RTDEA 
Sbjct: 110 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKRTDEAL 169

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +Y+ L++  C +GK
Sbjct: 170 DILLHRTPELGCVPDVFSYSILLKSLCDQGK 200


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 165/343 (48%), Gaps = 13/343 (3%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           Q L  H    P+L   N+L  SL +A     AM        SP+  +L + I   CE  L
Sbjct: 28  QMLERHC--VPNLRDINLLLASLCQAGKMDQAMAIFRGIQCSPSVITLNILINGFCELQL 85

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGC-IKIDRTDLVWKLYH-------DLIESGYL 205
           +++A   F ++++        T  +A++ C  K+DR D   +L         D+I    +
Sbjct: 86  LDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQLLEESSCCSSDVIAITSV 145

Query: 206 IQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            + FC   +V E Y+LL  ++E     P+  A+N +I  FC+        E+L T+V+  
Sbjct: 146 ARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMG 205

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY--VPDTVMYTTVIHGLCKMGWLGD 322
             P+  TY  +I+G CKS    EA ++F  L  R +   P+ V +  +I GLCK   L  
Sbjct: 206 CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRDHHAEPNVVTFNALISGLCKADRLEH 265

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  +M  + L  + +TY +++ G C+     E  R+ +EML +G   + VTY TL+ 
Sbjct: 266 AFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREGCNPSVVTYTTLVH 325

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             C  G   +A  +   M  KGI  DV TY  L++G  + GK+
Sbjct: 326 AHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKV 368



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 43/333 (12%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I  LC++G + EA   ++++ E     +++  N  L    +  + D    +
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 196 YH------DLIESGYLIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKK 248
           +        +I    LI  FC    + +  EL  ++ ++  LVPE T +  +I  +C+  
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 249 NFGRVSELLH------------TMVAR----------------------NRAPDNFTYEE 274
              +  +LL             T VAR                      +  PD   +  
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G CK+ +  EAY +   L   G VP+ V YTT+I G CK G L +A +++  +  + 
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSRD 240

Query: 335 --LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
               PN  T+N++I G C+ D LE A  L K+M  +     T TY TL+ GLC  GRT E
Sbjct: 241 HHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTSE 300

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +FEEM ++G    V+TY TL+  +CK G +
Sbjct: 301 VSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSL 333



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/380 (25%), Positives = 151/380 (39%), Gaps = 67/380 (17%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLELYIQCLCESG------ 152
           SP +++ N+L +   E +    A++            P   +    I+C C+        
Sbjct: 67  SPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQAR 126

Query: 153 -LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--------- 202
            L+EE+ C  S          +    S   G  K  R D  ++L  D++E          
Sbjct: 127 QLLEESSCCSS---------DVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVA 177

Query: 203 -GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS------- 254
              +I  FC  G+V E YE+L  ++  G VP    +  LI  FC+  N            
Sbjct: 178 WNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEALQLFKVLS 237

Query: 255 ------------------------------ELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
                                         EL+  M AR+   D FTY  +++GLCK  +
Sbjct: 238 SRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGR 297

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             E  RVF ++   G  P  V YTT++H  CK G L DA+++   M+ KG+ P+  TY  
Sbjct: 298 TSEVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTYTV 357

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++ G      +  A    +++L +      V Y+ L+ G C     DEA   + EM  + 
Sbjct: 358 LLEGLFENGKVRTATEFFEKILRERCPPCAVVYSALVRGCCKAALVDEAVKYYVEMLDRR 417

Query: 405 IFRDVITYNTLIQGYCKEGK 424
           +  D  T   L++  CK G+
Sbjct: 418 LAPDPATCKLLVEMLCKRGR 437


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 164/342 (47%), Gaps = 20/342 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD------STGFSPNPNSLELYIQCLCESGLIEEA 157
           PD+ SC +L   L +    + A++           G +P+  S    I    + G   +A
Sbjct: 156 PDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVINGFFKEGDSGKA 215

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           +  + ++ +  +   + T++S +    K    D   ++   ++++G +         +  
Sbjct: 216 YSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTSIMHG 275

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPEN-----TAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +C+ G+  E    L++V  DG+ P+        +  L+  +  K     +  LL  MV  
Sbjct: 276 YCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDLMVRN 335

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD++ Y  +I    K  K  EA  VF+ ++++G  PD V Y  VI  LCK G + DA
Sbjct: 336 GIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDA 395

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              + +MI +GL P    YNS+IHG C  +  E A+ L  EMLD+G    T+ +N++I  
Sbjct: 396 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 455

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  GR  E+  LF+ M + G+  D+ITY+TLI GYC  GK+
Sbjct: 456 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKM 497



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/324 (26%), Positives = 145/324 (44%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ +   L        A       +D +   G  P+     + I    + G ++EA
Sbjct: 301 GLEPDIATYCTLLQGYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEA 360

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FSK+++ G                          L  D +  G +I   C  G+V +
Sbjct: 361 MLVFSKMRQQG--------------------------LNPDAVTYGAVIGILCKSGRVED 394

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                 Q++++GL P N  +N LI   C    + R  EL+  M+ R    +   +  +I+
Sbjct: 395 AMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIID 454

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
             CK  + +E+ ++F+ +   G  PD + Y+T+I G C  G + +A K+   M+  GL P
Sbjct: 455 SHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKP 514

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY ++I+GYC+I  + +A  L KEM   G     +TYN ++ GL    RT  A  L+
Sbjct: 515 NTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELY 574

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
             + + G   ++ TYN ++ G CK
Sbjct: 575 VRITESGTQIELSTYNIILHGLCK 598



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/269 (24%), Positives = 120/269 (44%), Gaps = 40/269 (14%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    +I  F  +G   + Y    ++L+  + P+   ++ +I+  C+ +   +  E+L
Sbjct: 195 DVVSYTTVINGFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVL 254

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAY----RVFND-LKERGYVPDTVMYTTVIH 312
            +MV     P+  TY  +++G C S +  EA     +V +D ++  G  PD   Y T++ 
Sbjct: 255 TSMVKNGVMPNCRTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQ 314

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY----------------------- 349
           G    G L     +   M+  G+ P+ Y YN +I  Y                       
Sbjct: 315 GYATKGALVGMHALLDLMVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNP 374

Query: 350 ------------CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
                       C+   +E+A    ++M+D+G     + YN+LI GLC   + + A  L 
Sbjct: 375 DAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELI 434

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            EM  +GI  + I +N++I  +CKEG+++
Sbjct: 435 LEMLDRGICLNTIFFNSIIDSHCKEGRVI 463



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 82/372 (22%), Positives = 145/372 (38%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD    N+L  +  +      AM     +   G +P+  +    I  LC+SG +E+A
Sbjct: 336 GIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDA 395

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++ + G+      +NS + G    ++ +   +L  ++++ G          +I +
Sbjct: 396 MLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDS 455

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V E  +L   ++  G+ P+   ++ LI  +C         +LL  MV+    P+
Sbjct: 456 HCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPN 515

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI----------------- 311
             TY  +ING CK  +  +A  +F +++  G  PD + Y  ++                 
Sbjct: 516 TVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYV 575

Query: 312 ------------------HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
                             HGLCK     DA +M+  +    L     T+N MI    ++ 
Sbjct: 576 RITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVG 635

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
              EAK L       G      TY  +   +   G  +E   LF  M   G   D    N
Sbjct: 636 RNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 695

Query: 414 TLIQGYCKEGKI 425
            +++   + G+I
Sbjct: 696 FIVRELLQRGEI 707



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 4/159 (2%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY  +I   C++ +    +    ++ ++G+  + + +T ++ GLC      DA  +
Sbjct: 85  PTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 327 WF-EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD---KGYGETTVTYNTLIA 382
               M     +P+ ++   ++ G C  +  +EA  L   M D    G     V+Y T+I 
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSAPDVVSYTTVIN 204

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G    G + +AY  + EM  + I  DV+TY+++I   CK
Sbjct: 205 GFFKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCK 243



 Score = 45.1 bits (105), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P  +TY  +I   CR D L+        ++ KG+    +T+  L+ GLC   RT +A  +
Sbjct: 85  PTVHTYAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDI 144

Query: 397 -FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               M +     DV +   L++G C E +
Sbjct: 145 VLRRMTELSCMPDVFSCTILLKGLCDENR 173


>gi|297816792|ref|XP_002876279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322117|gb|EFH52538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 178/356 (50%), Gaps = 13/356 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           +Q N+  +IR+   + S  G S ++V+   L     +      A+D    +++ G SPN 
Sbjct: 315 KQGNMEDAIRWKDEMVSD-GISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNS 373

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I+   ++G +E+A   + K++ +G+  S+   ++ + G +K  + +   KL+ +
Sbjct: 374 VTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDE 433

Query: 199 LIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
             E+G         ++   C  GK+ +  ELLR++   G+ P   ++N ++   C KKN 
Sbjct: 434 SFETGLANVFICNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNM 493

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                +   M+ +   P+N+TY  +I+G  K+        V N +       + V+Y T+
Sbjct: 494 DLARTVFSNMLEKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTI 553

Query: 311 IHGLCKMGWLGDARKMWFEMI-HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           I+GLCK+G    AR++   MI  K    +  +YNS+I G+ +   ++ A   ++EM   G
Sbjct: 554 INGLCKVGQTSKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANG 613

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                +TY +L+ GLC + R D+A  + +EM  KG+  D+  Y  LI G+CK+  +
Sbjct: 614 ISPNVITYTSLMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNM 669



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 151/331 (45%), Gaps = 13/331 (3%)

Query: 109 CNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           CN +   L +      A + L   +S G  PN  S    +   C    ++ A   FS + 
Sbjct: 445 CNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNML 504

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVS 216
           E G+  +  T++  + GC K      V ++ + +  S           +I   C  G+ S
Sbjct: 505 EKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTS 564

Query: 217 EGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           +  ELL  ++E+        ++N +I  F ++            M A   +P+  TY  +
Sbjct: 565 KARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSL 624

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ++GLCK+ +  +A  + +++K +G   D   Y  +IHG CK   +  A  ++ E++ +GL
Sbjct: 625 MDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGL 684

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P++  YNS+I G+  + N+  A  L+K+ML  G      TY TLI GL   G    A  
Sbjct: 685 NPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASD 744

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           L+ EM   G+  D I Y  ++ G  K+G+ V
Sbjct: 745 LYTEMQAVGLVPDEIMYTVIVNGLSKKGQFV 775



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/274 (29%), Positives = 132/274 (48%), Gaps = 9/274 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           ++A ++  + ++   F  +  S    I    + G ++ A  A+ ++   G+  ++ T+ S
Sbjct: 564 SKARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTS 623

Query: 179 ALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  K +R D   ++           D+   G LI  FC    +     L  ++LE+G
Sbjct: 624 LMDGLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEG 683

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           L P    +N LIS F    N     +L   M+      D  TY  +I+GL K    + A 
Sbjct: 684 LNPSQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILAS 743

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            ++ +++  G VPD +MYT +++GL K G      KM+ EM    + PN   YN++I G+
Sbjct: 744 DLYTEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGH 803

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            R  NL+EA RLH EMLDKG      T++ L++G
Sbjct: 804 YREGNLDEAFRLHDEMLDKGILPDGATFDILVSG 837



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 65/223 (29%), Positives = 110/223 (49%), Gaps = 1/223 (0%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           YL+ A+  D +     +++ Q+LE G++P     N+ +S   ++ +     EL   MVA 
Sbjct: 167 YLLNAYSKDRQTDYAVDIVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMVAI 226

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
               DN T + ++    +  K  EA  VF+   ERG  PD+++Y+  +   CK   L  A
Sbjct: 227 GVDGDNGTTQLLMRASLREEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMA 286

Query: 324 RKMWFEMIHKGL-LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
             +  EM  K L +P++ TY S+I    +  N+E+A R   EM+  G     V   +LI 
Sbjct: 287 NSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLIT 346

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C +     A  LF +M  +G   + +T++ LI+ + K G++
Sbjct: 347 GHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFSKNGEM 389



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 147/337 (43%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  + ++L D   +    +  ++ ++   S+    N    +  I  LC+ G   +A
Sbjct: 507 GLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTSKA 566

Query: 158 FCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
               + + E   F  S  ++NS + G IK    D     Y ++  +G          L+ 
Sbjct: 567 RELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSLMD 626

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C + ++ +  E+  ++   G+  +  A+  LI  FC+K N    S L   ++     P
Sbjct: 627 GLCKNNRMDQALEMRDEMKNKGVKLDIPAYGALIHGFCKKSNMESASALFSELLEEGLNP 686

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
               Y  +I+G       + A  ++  + + G   D   YTT+I GL K G L  A  ++
Sbjct: 687 SQPVYNSLISGFRNLGNMVAALDLYKKMLKDGLRCDLGTYTTLIDGLLKEGNLILASDLY 746

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   GL+P+E  Y  +++G  +     +  ++ +EM         + YN +IAG    
Sbjct: 747 TEMQAVGLVPDEIMYTVIVNGLSKKGQFVKVVKMFEEMKKNNVTPNVLIYNAVIAGHYRE 806

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G  DEA+ L +EM  KGI  D  T++ L+ G  K GK
Sbjct: 807 GNLDEAFRLHDEMLDKGILPDGATFDILVSG--KVGK 841



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 150/370 (40%), Gaps = 82/370 (22%)

Query: 138 PNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGV-FGSIKTWNSALLGCIKIDRTD--LV 192
           P+SL   L +Q  C++  +  A     ++KE  +   S +T+ S +L  +K    +  + 
Sbjct: 265 PDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQETYTSVILASVKQGNMEDAIR 324

Query: 193 WK-------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           WK       +  +++ +  LI   C +  +    +L  ++  +G  P +  F+ LI RF 
Sbjct: 325 WKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYKMENEGPSPNSVTFSVLIERFS 384

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND----------- 294
           +     +  E    M +    P  F    +I G  K +K  EA ++F++           
Sbjct: 385 KNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQKHEEALKLFDESFETGLANVFI 444

Query: 295 -----------------------LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
                                  ++ RG  P+ V Y  V+   C+   +  AR ++  M+
Sbjct: 445 CNTILSWLCKQGKIDKATELLRKMESRGIGPNVVSYNNVMLAHCRKKNMDLARTVFSNML 504

Query: 332 HKGLLPNEYTYN-----------------------------------SMIHGYCRIDNLE 356
            KGL PN YTY+                                   ++I+G C++    
Sbjct: 505 EKGLKPNNYTYSILIDGCFKNHDEQNVLEVVNQMTSSNIEVNGVVYQTIINGLCKVGQTS 564

Query: 357 EAKRLHKEML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           +A+ L   M+ +K +  + ++YN++I G    G  D A   +EEM   GI  +VITY +L
Sbjct: 565 KARELLANMIEEKRFCVSCMSYNSIIDGFIKEGEMDYAVAAYEEMCANGISPNVITYTSL 624

Query: 416 IQGYCKEGKI 425
           + G CK  ++
Sbjct: 625 MDGLCKNNRM 634



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/420 (22%), Positives = 173/420 (41%), Gaps = 39/420 (9%)

Query: 16  PRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLF 75
           P+  +NP+ + R +   T E   + ++++     +   KP  +            +D   
Sbjct: 32  PQESENPSQEQRLVCGSTSEENPVTSKVS-----LLAAKPEQK------------DDASV 74

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA-RAFKVAMDFLDSTGF 134
               L ++NN   ++RF+ W     G   D     VL   LV +   +  A D L     
Sbjct: 75  IDVLLNRRNNPEAALRFYNWARPWRGSFEDGDVFWVLIHILVTSPETYGRASDLLIRYVS 134

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           + NP  +      +  S L++ A       K  G   + + +N  L    K  +TD    
Sbjct: 135 TSNPTPM----ASVLVSNLVDSA-------KLFGFEVNSRAFNYLLNAYSKDRQTDYAVD 183

Query: 195 LYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           + + ++E G +         + A      ++E  EL  +++  G+  +N     L+    
Sbjct: 184 IVNQMLELGVIPFVPYVNRTLSALVQRNSITEAKELYSRMVAIGVDGDNGTTQLLMRASL 243

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY-VPDT 304
            ++      E+    + R   PD+  Y   +   CK+     A  +  ++KE+   VP  
Sbjct: 244 REEKPAEALEVFSRAIERGAEPDSLLYSLAVQACCKTLNLAMANSLLREMKEKKLCVPSQ 303

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             YT+VI    K G + DA +   EM+  G+  N     S+I G+C+ ++L  A  L  +
Sbjct: 304 ETYTSVILASVKQGNMEDAIRWKDEMVSDGISMNVVAATSLITGHCKNNDLGSALDLFYK 363

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M ++G    +VT++ LI     +G  ++A   +++M   G+   V   +T+IQG+ K  K
Sbjct: 364 MENEGPSPNSVTFSVLIERFSKNGEMEKALEFYKKMESLGLTPSVFHVHTIIQGWLKGQK 423


>gi|297743431|emb|CBI36298.3| unnamed protein product [Vitis vinifera]
          Length = 641

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 105/423 (24%), Positives = 185/423 (43%), Gaps = 46/423 (10%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWL-HSHYG 101
           + K + ++  T  +WE+ L +                L +  +V L ++FF W+    Y 
Sbjct: 30  LVKDILEVLHTHNQWEENLQTRFSESEVLASDVAHLVLDRIRDVELGLKFFDWVSRGQYS 89

Query: 102 FSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
              +  + + L   L  +R F   +V ++ +     SP   ++ + IQ   +SGL+E+A 
Sbjct: 90  GPINGFAYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKAL 149

Query: 159 -CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              +  LK    F  +   NS L   +K+ R ++  K       +  +++  C +GK+ E
Sbjct: 150 ELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKF------TCIMVKGLCKEGKLEE 203

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G +L+      G +P    +N LI  +C+K +    + L   +  +   P   TY  +IN
Sbjct: 204 GRKLIEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIIN 263

Query: 278 GLCKSRKRLEAYRVFNDLKERGYV-----------------------------------P 302
           G CK        R+  ++  RG                                     P
Sbjct: 264 GFCKKGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKP 323

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D V Y T+I G C+ G + +A ++  + + KGL+PN+++Y  +IH YC+    + A    
Sbjct: 324 DIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWL 383

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            EM ++G+    VTY  L+ GL + G  D A  + E+M ++G+F D   YN L+ G CK+
Sbjct: 384 IEMTERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKK 443

Query: 423 GKI 425
            K+
Sbjct: 444 FKL 446



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 176/401 (43%), Gaps = 67/401 (16%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------------------- 129
           ++  + ++   Y + PD+++CN L + LV+    ++A  F                    
Sbjct: 148 ALELYYFVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKFTCIMVKGLCKEGKLEEGRKL 207

Query: 130 --DSTGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
             D  G    PN +     I   C+ G +E A   F +LK  G   +++T+ + + G  K
Sbjct: 208 IEDRWGQGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCK 267

Query: 186 ------IDR--------------------TDLVWKLYH------------------DLIE 201
                 IDR                     D  +K  H                  D++ 
Sbjct: 268 KGDFKAIDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIVKAVETIEGMIECGCKPDIVT 327

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI   C DGKVSE  +LL Q L  GL+P   ++  LI  +C++  + R S  L  M 
Sbjct: 328 YNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMT 387

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            R   PD  TY  +++GL  + +   A  +   + ERG  PD  +Y  ++ GLCK   L 
Sbjct: 388 ERGHKPDLVTYGALVHGLVVAGEVDVALTIREKMLERGVFPDAGIYNILMSGLCKKFKLP 447

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A+ +  EM+ + +LP+ + Y +++ G+ R  NL+EA++L +  ++KG     V YN +I
Sbjct: 448 AAKLLLAEMLDQSVLPDAFVYATLVDGFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMI 507

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            G C  G   +A      M ++ +  D  TY+T+I GY K+
Sbjct: 508 KGYCKFGMMKDAMACINRMKKRHLAPDEFTYSTVIDGYVKQ 548



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 114/269 (42%), Gaps = 29/269 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L            A   L+     G  PN  S    I   C+ G  + A
Sbjct: 320 GCKPDIVTYNTLISGSCRDGKVSEADQLLEQALGKGLMPNKFSYTPLIHAYCKQGGYDRA 379

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++ E G                             DL+  G L+      G+V  
Sbjct: 380 SNWLIEMTERG--------------------------HKPDLVTYGALVHGLVVAGEVDV 413

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +  ++LE G+ P+   +N L+S  C+K        LL  M+ ++  PD F Y  +++
Sbjct: 414 ALTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVD 473

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  ++    EA ++F    E+G  P  V Y  +I G CK G + DA      M  + L P
Sbjct: 474 GFIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAP 533

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +E+TY+++I GY +  +L+ A+++ +EM+
Sbjct: 534 DEFTYSTVIDGYVKQHDLDGAQKMFREMV 562



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/214 (28%), Positives = 90/214 (42%), Gaps = 25/214 (11%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS---RKRLEAYRVF 292
           A++ L+      + F  +  +L  M     +P       VI     S    K LE Y  +
Sbjct: 96  AYSSLLKLLARSRVFSEMEVVLENMRVEEMSPTREAMSIVIQAYSDSGLVEKALELY--Y 153

Query: 293 NDLKERGYVPDTVMYTTV--------------------IHGLCKMGWLGDARKMWFEMIH 332
             LK   Y PD +   ++                    + GLCK G L + RK+  +   
Sbjct: 154 FVLKTYTYFPDVIACNSLLNMLVKLGRIEIARKFTCIMVKGLCKEGKLEEGRKLIEDRWG 213

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +G +PN   YN++I GYC+  ++E A  L  E+  KG+  T  TY  +I G C  G    
Sbjct: 214 QGCIPNIIFYNTLIDGYCKKGDMEMANGLFIELKLKGFLPTVETYGAIINGFCKKGDFKA 273

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              L  EM  +G+  +V  YNT+I    K G IV
Sbjct: 274 IDRLLMEMNSRGLTVNVQVYNTIIDARYKHGHIV 307



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/217 (21%), Positives = 87/217 (40%), Gaps = 12/217 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  S   L  +  +   +  A ++L      G  P+  +    +  L  +G ++ A
Sbjct: 355 GLMPNKFSYTPLIHAYCKQGGYDRASNWLIEMTERGHKPDLVTYGALVHGLVVAGEVDVA 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                K+ E GVF     +N  + G  K  +      L  ++++   L         +  
Sbjct: 415 LTIREKMLERGVFPDAGIYNILMSGLCKKFKLPAAKLLLAEMLDQSVLPDAFVYATLVDG 474

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +G + E  +L    +E G+ P    +N +I  +C+          ++ M  R+ APD
Sbjct: 475 FIRNGNLDEARKLFELTIEKGMNPGIVGYNAMIKGYCKFGMMKDAMACINRMKKRHLAPD 534

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
            FTY  VI+G  K      A ++F ++ +    P+ +
Sbjct: 535 EFTYSTVIDGYVKQHDLDGAQKMFREMVKMKCKPNVM 571


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 159/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+  +L ++  +   +K A+  LD     G +P+  +  + +  +C+ G +++A
Sbjct: 182 GCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDA 241

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G   +  ++N  L G    +R +   KL  ++   G          LI  
Sbjct: 242 MEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISF 301

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G V    E+L Q+ + G  P + ++N ++  FC++K   R    +  MV+    PD
Sbjct: 302 LCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPD 361

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  ++  LC+  +   A  + + LK++G  P  + Y TVI GL K G   +A ++  
Sbjct: 362 IVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLN 421

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KGL P+  TY+++  G CR   +EEA +   ++ D G    TV YN ++ GLC   
Sbjct: 422 EMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRR 481

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T  A  LF  M   G   +  TY  LI+G   EG +
Sbjct: 482 ATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLV 518



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 148/335 (44%), Gaps = 29/335 (8%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCE 150
           + L +     PD  + N L   L        A+  LD     G  P+  +  + ++  C+
Sbjct: 140 RRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCK 199

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC 210
               ++A     ++++ G    I T+N                           ++   C
Sbjct: 200 RSGYKQAVKLLDEMRDKGCAPDIVTYN--------------------------VVVNGIC 233

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +G+V +  E L+ +   G  P   ++N ++   C  + +    +L+  M  + R P+  
Sbjct: 234 QEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVV 293

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +I+ LC+      A  + + + + G  P+++ Y  ++H  CK   +  A      M
Sbjct: 294 TFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELM 353

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +  G  P+  +YN+++   CR   ++ A  L  ++ DKG     ++YNT+I GL   G+T
Sbjct: 354 VSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKT 413

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EA  L  EM  KG+  D+ITY+T+  G C+EG+I
Sbjct: 414 EEALELLNEMVTKGLQPDIITYSTISSGLCREGRI 448



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 132/287 (45%), Gaps = 11/287 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CI--KID---RTDLVWKLYHD 198
           I+ LC SG   EA    +  +       + ++N+ + G C+  ++D   R      +  D
Sbjct: 97  IKKLCASGRTAEARRVLASCEP-----DVMSYNAMVAGYCVTGQLDNARRLVAAMPMEPD 151

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI+  C  G+      +L  +L  G VP+   +  L+   C++  + +  +LL 
Sbjct: 152 TYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLD 211

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +  APD  TY  V+NG+C+  +  +A      L   G  P+TV Y  V+ GLC   
Sbjct: 212 EMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAE 271

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              DA K+  EM  KG  PN  T+N +I   CR   +E A  +  ++   G    +++YN
Sbjct: 272 RWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYN 331

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++   C   + D A    E M   G + D+++YNTL+   C+ G++
Sbjct: 332 PILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEV 378



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 145/339 (42%), Gaps = 30/339 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  ++ F + L S YG  P+ VS N++   L  A  ++ A   M  +   G  PN 
Sbjct: 234 QEGRVDDAMEFLKSLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNV 292

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  LC  GL+E A     ++ + G   +  ++N                     
Sbjct: 293 VTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNP-------------------- 332

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 ++ AFC   K+      +  ++  G  P+  ++N L++  C         ELLH
Sbjct: 333 ------ILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLH 386

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +   P   +Y  VI+GL K+ K  EA  + N++  +G  PD + Y+T+  GLC+ G
Sbjct: 387 QLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREG 446

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +A K + ++   G+ PN   YN+++ G C+      A  L   M+  G      TY 
Sbjct: 447 RIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYT 506

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            LI GL   G   EA  +  E+  +G+    +     I+
Sbjct: 507 ILIEGLAYEGLVKEAREMMAELCSRGVVSKTLVNKGAIR 545



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 11/115 (9%)

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEY-TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           L + G L +A ++   M   GL P+      ++I   C      EA+R+           
Sbjct: 66  LVRRGDLEEAIRLVESM--AGLEPSAAGPCAALIKKLCASGRTAEARRVLASC-----EP 118

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             ++YN ++AG C+ G+ D A  L   M  +    D  TYNTLI+G C  G+  N
Sbjct: 119 DVMSYNAMVAGYCVTGQLDNARRLVAAMPME---PDTYTYNTLIRGLCGRGRTDN 170


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G +P+ V +TT+I G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G  +  +L++A  L  EM  KG      
Sbjct: 259 KNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKF 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 167/373 (44%), Gaps = 42/373 (11%)

Query: 69  NFNDPLFFREFLKQ-----QNNVLLSIRFFQWLH--SHYGFSPDLVSCNVLFDSLVEARA 121
           NFN P+ F++ L       +   + + + FQ+ H   +   +P L S   L   L + + 
Sbjct: 52  NFNTPISFQQQLSMFLHNCKTGNITATQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKH 111

Query: 122 FKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           +       +    +G SP+  +L + + CLC    + E     + +   G    I T+ +
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
                                     LI+  C + ++S+   L  ++ + G  P    + 
Sbjct: 172 --------------------------LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYG 205

Query: 239 KLISRFCEKKNFGRVSELLHTMV------ARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
            L+   C   N     +L   M+        N  P   +Y  +I+ LCK R+  EA  +F
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            ++K +G  P  + YT++IHG C  G   +A++++ EM+++G+ PN  T+N +I   C+ 
Sbjct: 266 EEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 325

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             + EAK L + M+ +G     +TYN+LI G CL G  + A  LF  M  KG   DVI Y
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 385

Query: 413 NTLIQGYCKEGKI 425
             LI GYCK  K+
Sbjct: 386 TVLINGYCKTSKV 398



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 170/355 (47%), Gaps = 34/355 (9%)

Query: 80  LKQQNNVLLSIRFFQWL---HSHYG--FSPDLVSCNVLFDSLVEARAFKVAMDFLDST-- 132
           L +  N+ ++++  Q +    S YG  F P ++S +++ D+L + R    A D  +    
Sbjct: 211 LCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKV 270

Query: 133 -GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G +P   S    I   C  G  EEA   F+++   GV  ++ T+N              
Sbjct: 271 QGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFN-------------- 316

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                        LI   C +GKV E  +LL  +++ G+VP    +N LI  FC   +  
Sbjct: 317 ------------VLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLN 364

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              EL  +M ++   PD   Y  +ING CK+ K  EA +++N + + G  PD   Y  ++
Sbjct: 365 SARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALL 424

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GL + G +GDA+K++  M   G+  + Y Y   ++G C+   L EA  L  ++      
Sbjct: 425 TGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIK 484

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                +N LI GLC  G+ + A+ LFE++ Q+ +  DV+TYN +I  +C+ G++V
Sbjct: 485 LDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVV 539



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 83/321 (25%), Positives = 140/321 (43%), Gaps = 12/321 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P ++S   L         ++ A    +   + G  PN  +  + I  LC+ G + EA
Sbjct: 272 GMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEA 331

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
                 + + G+  ++ T+NS + G   +   +   +L+          D+I    LI  
Sbjct: 332 KDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLING 391

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   KV E  +L   +L+ G  P+   +  L++   +    G   +L   M       D
Sbjct: 392 YCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGD 451

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            + Y   +NGLCK+    EA  +FN LK      D   +  +I GLCK G L  A +++ 
Sbjct: 452 LYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFE 511

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++  + L P+  TYN MIH +CR   + +A  L ++M   G     +TY TLI G     
Sbjct: 512 KLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESK 571

Query: 389 RTDEAYHLFEEMAQKGIFRDV 409
           + ++   L   M Q+ +  DV
Sbjct: 572 KLEKVVELLHMMVQRDVSLDV 592


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 148/290 (51%), Gaps = 9/290 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I  LCE+G + EA   +++++E G F +++T+   +    +  R      L+ ++ E G 
Sbjct: 262 IHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGC 321

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI   C +G++ E  ++L +++E G+ P    FN LI  +C++        
Sbjct: 322 EPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVG 381

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L  M ++   P+  TY E+I G C+ +    A  + N + E    PD V Y T+IHGLC
Sbjct: 382 VLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLC 441

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           ++G +  A +++  MI  G  P+++T+N+ +   CR+  + EA ++ + + +K       
Sbjct: 442 EVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEH 501

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            Y  LI G C  G+ + A  LF+ M  +    + IT+N +I G  KEGK+
Sbjct: 502 AYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKV 551



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 158/328 (48%), Gaps = 12/328 (3%)

Query: 107 VSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           VS   L   L EA     A++F   +   G  P   +  + +  LCESG   EA   F +
Sbjct: 256 VSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGE 315

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           ++E G   ++ T+   +    K  R D   K+ ++++E G          LI ++C  G 
Sbjct: 316 MRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGM 375

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + +   +L  +    + P    +N+LI  FC  K+  R   LL+ MV    +PD  TY  
Sbjct: 376 MEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNT 435

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+GLC+      A R+F  +   G+ PD   +   +  LC+MG +G+A ++   +  K 
Sbjct: 436 LIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH 495

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +  NE+ Y ++I GYC+   +E A  L K ML +     ++T+N +I GL   G+  +A 
Sbjct: 496 VKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAM 555

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            L E+MA+  +   + TYN L++   KE
Sbjct: 556 LLVEDMAKFDVKPTLHTYNILVEEVLKE 583



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/425 (26%), Positives = 173/425 (40%), Gaps = 64/425 (15%)

Query: 53  TKPRWEQ--TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN 110
           ++PRW +  +L + IPS     P           + L ++ FF+W+  H+ F   L + +
Sbjct: 34  SRPRWRKDPSLKTLIPSLT---PSLLCSLFNLNPDPLTALNFFRWIRRHHNFPHSLATHH 90

Query: 111 VLFDSLVEARAFKVAMDFLDST---------------------------------GFSPN 137
            L   LV  R  + A +  +S                                   F  +
Sbjct: 91  SLLLLLVRHRTLRAAENVRNSMIKSCTSPHDATFLLNLLRRMNTAAAAADHQHQLAFKLS 150

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEM------GVFGSIKTWNSAL-----LGCIKI 186
             S    + CL    +++E     S  KEM       VF ++ T N+ L     LG + +
Sbjct: 151 LTSYNRLLMCLSRFSMVDE---MISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAV 207

Query: 187 DRTDLVWKLY----HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA--FNKL 240
            R   V  L      DL     L+  +C +  V     +        ++P   A  +  L
Sbjct: 208 ARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVF------CVMPRRNAVSYTNL 261

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I   CE        E    M      P   TY  ++  LC+S + LEA  +F +++ERG 
Sbjct: 262 IHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERGC 321

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+   YT +I  LCK G + +A KM  EM+ KG+ P+   +N++I  YC+   +E+A  
Sbjct: 322 EPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVG 381

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +   M  K       TYN LI G C     D A  L  +M +  +  DV+TYNTLI G C
Sbjct: 382 VLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLC 441

Query: 421 KEGKI 425
           + G +
Sbjct: 442 EVGVV 446



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 5/295 (1%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +L   +   C+ G +  A   F ++        + T+ S +LG  + D  +    +
Sbjct: 187 PNLITLNTMLNSYCKLGNMAVARLFFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGV 246

Query: 196 Y-----HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +      + +    LI   C  GK+ E  E   ++ EDG  P    +  L+   CE    
Sbjct: 247 FCVMPRRNAVSYTNLIHGLCEAGKLHEALEFWARMREDGCFPTVRTYTVLVCALCESGRE 306

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                L   M  R   P+ +TY  +I+ LCK  +  EA ++ N++ E+G  P  V +  +
Sbjct: 307 LEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNAL 366

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I   CK G + DA  +   M  K + PN  TYN +I G+CR  +++ A  L  +M++   
Sbjct: 367 IGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKL 426

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               VTYNTLI GLC  G  D A  LF  M + G   D  T+N  +   C+ G++
Sbjct: 427 SPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRV 481



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 142/331 (42%), Gaps = 12/331 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +  VL D L +      A+  L+     G +P+       I   C+ G++E+A
Sbjct: 320 GCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDA 379

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
                 ++   V  +++T+N  + G  +    D    L + ++ES           LI  
Sbjct: 380 VGVLGLMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHG 439

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G V     L R ++ DG  P+   FN  +   C     G   ++L ++  ++   +
Sbjct: 440 LCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKAN 499

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+G CK+ K   A  +F  +     +P+++ +  +I GL K G + DA  +  
Sbjct: 500 EHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVE 559

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M    + P  +TYN ++    +  + + A  +   ++  GY    VTY   I   C  G
Sbjct: 560 DMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQG 619

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R +EA  +  ++  +G+  D   YN LI  Y
Sbjct: 620 RLEEAEEMVIKIKNEGVLLDSFIYNLLINAY 650



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/332 (24%), Positives = 147/332 (44%), Gaps = 18/332 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           + +   P L + N+L + +++   F  A + L+   S+G+ PN  +   +I+  C  G +
Sbjct: 562 AKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRL 621

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSAL--LGCIKI--DRTDLVWKLYHDLIESGYLIQAFC 210
           EEA     K+K  GV      +N  +   GC+ +      ++ +++    E  YL  +  
Sbjct: 622 EEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSIL 681

Query: 211 NDGKVSEGYELLRQVLEDGLVPEN-----TAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
               V E ++      ++G  P       T  +   +    K +FG  + L   M     
Sbjct: 682 MKHLVIEKHK------KEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGC 735

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY ++INGLCK  +   A+ +++ ++E G  P  +++ +++   CK+G  G+A  
Sbjct: 736 VPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVT 795

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M+    L +  +Y  +I G     N E+A+ +   +L  GY    V +  LI GL 
Sbjct: 796 LLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLA 855

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             G  D+   L   M + G      TY+ L+Q
Sbjct: 856 KTGYVDQCSELLNLMEKNGCRLHPETYSMLMQ 887


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 171/345 (49%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +  H    PD+V+ ++L  SL +    K A D  D+    G +PN  S  + +
Sbjct: 308 AVRVFKEMRRH-SILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIML 366

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK------LY 196
                 G + +    F  +   G+   I T+N    A   C  +D+  +++       + 
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    +I A C  GK+ +  E   Q+++ G+ P+  A++ LI  FC   +  +  EL
Sbjct: 427 PDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  P  V+Y+ ++ G C 
Sbjct: 487 ISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCL 546

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN+  Y ++++GYC+I  ++E   L +EML KG   +T+ 
Sbjct: 547 VGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 606

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN +I GL   GRT  A   F EM + GI  +  TYN +++G  K
Sbjct: 607 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYNIVLRGLFK 651



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 165/374 (44%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PD V+ + +  +L +ARA   A  FL                       STG     
Sbjct: 249 GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG----VFGSIKTWNS 178
                        P+  +L + +  LC+ G I+EA   F  +   G    VF      N 
Sbjct: 309 VRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNG 368

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I         LI+A+ N G + +   +  ++ + G+ P
Sbjct: 369 YATKGCL-VDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +  +I+  C         E  + M+ +  APD + Y  +I G C     L+A  + 
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI 487

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++   G   D V ++++I+ LCK+G + DA+ ++   ++ GL P    Y+ ++ GYC +
Sbjct: 488 SEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLV 547

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM QKGI    I Y
Sbjct: 548 GKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 607

Query: 413 NTLIQGYCKEGKIV 426
           N +I G  + G+ V
Sbjct: 608 NIIIDGLFEAGRTV 621



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 133/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 121 CTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 180

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  +++ L+   C++   G+  +LL  M       +PD   Y  VI+G  K     +A  
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACD 240

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y++V+H LCK   +  A     +M++KG+LPN +TYN++I+GY 
Sbjct: 241 LFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM         VT + L+  LC +G+  EA  +F+ MA KG   +V 
Sbjct: 301 STGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVF 360

Query: 411 TYNTLIQGYCKEGKIVN 427
           +Y  ++ GY  +G +V+
Sbjct: 361 SYTIMLNGYATKGCLVD 377



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 160/354 (45%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   +++  N L     EA+    A+D L       G  P+  S  +
Sbjct: 129 LALAFFGQL-LRTGLRVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 187

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC+ G   +A      + E G   S  +  +++ + G  K    +    L+ ++++
Sbjct: 188 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C    + +    LRQ++  G++P N  +N LI  +     +  
Sbjct: 248 RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M   +  PD  T   ++  LCK  K  EA  VF+ +  +G  P+   YT +++
Sbjct: 308 AVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLN 367

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G    G L D   ++  M+  G+ P+ YT+N +I  Y     L++A  +  EM D G   
Sbjct: 368 GYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VTY T+IA LC  G+ D+A   F +M  +G+  D   Y+ LIQG+C  G ++
Sbjct: 428 DVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLL 481



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 52/234 (22%), Positives = 104/234 (44%), Gaps = 9/234 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G + +A   F     +G+  +   ++  + G   + + +   +++  ++ +G 
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 565

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G++ EG  L R++L+ G+ P    +N +I    E         
Sbjct: 566 EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 625

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             H M     A +  TY  V+ GL K+R   EA  +F +L+      + +   T+I G+ 
Sbjct: 626 KFHEMTESGIAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMF 685

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +   + +A+ ++  +   GL+P   TY+ MI    +   +EEA+ +   M + G
Sbjct: 686 QTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  +TY  ++    R    E A     ++L  G     +  N L+ G C   RTDEA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKRTDEAL 166

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +Y+ L++  C +GK
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGK 197


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 159/339 (46%), Gaps = 11/339 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGL 153
           +   +G +P L + N++   L ++     AMD  ++       +  +  + I  L ++G+
Sbjct: 180 MEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRSMPVSAATFSILINGLVKAGM 239

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------Y 204
           + +A     +    G    I T+ + +    K  +      L   +  +G          
Sbjct: 240 MIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNA 299

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C  G++ E  +LLR+++++G  P+   +  LI    ++K      +L   M +R 
Sbjct: 300 LLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRG 359

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            A D   Y  +I GL ++ K  +A  V+  +   G VPD V  +T+I GL K G +G A 
Sbjct: 360 LALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAV 419

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++  M  +GL PNE  Y+++IHG C+   ++ A  +  +M        T+TYN LI GL
Sbjct: 420 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 479

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  G  + A   F+EM + G   DV TYN LI G CK G
Sbjct: 480 CKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAG 518



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 170/386 (44%), Gaps = 48/386 (12%)

Query: 88  LSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLEL 143
           L+   FQ L S  +GF   + + N L D     +  + A + L    +T F P+  +  +
Sbjct: 100 LAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNV 159

Query: 144 YIQCLCESGLIEEAFCAFSKLKE-MGVFGSIKTWNSALLGCIK-------IDRTDLVWK- 194
            I   C +   EEAF    +++E  GV  S+KT N  L G  K       +D  + V + 
Sbjct: 160 LITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRS 219

Query: 195 ----------LYHDLIESGYLIQA-------------------------FCNDGKVSEGY 219
                     L + L+++G +IQA                            + K+ E  
Sbjct: 220 MPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAV 279

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            L+ ++  +G  P    +N L++  C+        +LL  +V     PD  TY  +I+GL
Sbjct: 280 ALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL 339

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            K ++  EAY++F ++  RG   DTV YT +I GL + G +  A  ++  M   G +P+ 
Sbjct: 340 GKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDV 399

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T ++MI G  +   +  A R+ K M  +G     V Y+ LI GLC   + D A  +  +
Sbjct: 400 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 459

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M +     D ITYN LI G CK G +
Sbjct: 460 MKKAFCTPDTITYNILIDGLCKSGDV 485



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 165/358 (46%), Gaps = 19/358 (5%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L +   VL ++  F+ +      S    S  +L + LV+A     A      T   G + 
Sbjct: 200 LCKSGKVLAAMDHFEAVRRSMPVSAATFS--ILINGLVKAGMMIQAHSLAQETTTNGCTI 257

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           + ++    +  L ++  I+EA     K+   G   +I T+N+ L G  K+ R +    L 
Sbjct: 258 DIHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLL 317

Query: 197 HDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
             ++++G          LI     + +  E Y+L +++   GL  +   +  LI    + 
Sbjct: 318 RKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQT 377

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
               + S +  TM +    PD  T   +I+GL K+ +   A R+F  ++ RG  P+ V+Y
Sbjct: 378 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 437

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           + +IHGLCK   +  A +M  +M      P+  TYN +I G C+  ++E A+    EML+
Sbjct: 438 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 497

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G      TYN LI+GLC  G TD A  + ++M+          Y++L+ G CK GK+
Sbjct: 498 AGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSSSR-----FVYSSLVDGLCKSGKL 550



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 144/309 (46%), Gaps = 15/309 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           M+ + + G +P   +    +  LC+ G +EEA     K+ + G    + T+ S + G  K
Sbjct: 282 MEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGK 341

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R+   +KL+ ++   G          LI+     GK+ +   + + +   G VP+   
Sbjct: 342 EKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVT 401

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            + +I    +    G    +  +M AR  AP+   Y  +I+GLCK+RK   A  +   +K
Sbjct: 402 LSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMK 461

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           +    PDT+ Y  +I GLCK G +  AR  + EM+  G  P+ YTYN +I G C+  N +
Sbjct: 462 KAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTD 521

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A  +  +M       +   Y++L+ GLC  G+ +    LF EM + G+  +  T   LI
Sbjct: 522 AACGVLDDM-----SSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV-ANSQTRTRLI 575

Query: 417 QGYCKEGKI 425
              CK  ++
Sbjct: 576 FHLCKANRV 584



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 38/328 (11%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
           L Q   +  +   ++ + SH G  PD+V+ + + D L +A     A+     +++ G +P
Sbjct: 374 LLQTGKIPQASSVYKTMTSH-GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 432

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N       I  LC++  ++   CA   L +M      K + +                  
Sbjct: 433 NEVVYSALIHGLCKARKMD---CALEMLAQMK-----KAFCTP----------------- 467

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D I    LI   C  G V        ++LE G  P+   +N LIS  C+  N      +
Sbjct: 468 -DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGV 526

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M     +   F Y  +++GLCKS K      +F+++ ER  V ++   T +I  LCK
Sbjct: 527 LDDM-----SSSRFVYSSLVDGLCKSGKLEGGCMLFHEM-ERSGVANSQTRTRLIFHLCK 580

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A  + F  I K  +P+ Y YNS+I    +   + E + +++EM  + +    VT
Sbjct: 581 ANRVDEAVSL-FNAIRKEGMPHPYAYNSIISALIKSGKVNEGQAVYQEM-TRWWKPDRVT 638

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           YN L+ G+    R D A++ + EM  +G
Sbjct: 639 YNALLNGMIGANRMDRAHYYYLEMTGRG 666



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/277 (22%), Positives = 114/277 (41%), Gaps = 50/277 (18%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSP 136
           L +   +  ++R F+ + +  G +P+ V  + L   L +AR    A++ L        +P
Sbjct: 409 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 467

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +  + I  LC+SG +E A   F ++ E G    + T+N  + G  K   TD    + 
Sbjct: 468 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVL 527

Query: 197 HDLIESGY----LIQAFCNDGKVSEGYELLRQVLEDGL---------------------- 230
            D+  S +    L+   C  GK+  G  L  ++   G+                      
Sbjct: 528 DDMSSSRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGVANSQTRTRLIFHLCKANRVDEA 587

Query: 231 -----------VPENTAFNKLISRFCEKKNFGRVSE--LLHTMVARNRAPDNFTYEEVIN 277
                      +P   A+N +IS   +    G+V+E   ++  + R   PD  TY  ++N
Sbjct: 588 VSLFNAIRKEGMPHPYAYNSIISALIKS---GKVNEGQAVYQEMTRWWKPDRVTYNALLN 644

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           G+  + +   A+  + ++  RGYVP      +++H L
Sbjct: 645 GMIGANRMDRAHYYYLEMTGRGYVPP----VSILHKL 677



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 45/88 (51%), Gaps = 1/88 (1%)

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           +T N+++  + R     EA  L K  L   +     T+N LI G CL    +EA+ +  E
Sbjct: 120 HTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEEAFAVIRE 179

Query: 400 MAQK-GIFRDVITYNTLIQGYCKEGKIV 426
           M +  G+   + T+N ++ G CK GK++
Sbjct: 180 MEEDFGVAPSLKTHNLVLHGLCKSGKVL 207


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 164/329 (49%), Gaps = 20/329 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F +++E +  +++ D    +G           I    ESG + +A   +   KE 
Sbjct: 47  SASAVFAAILETKGTQIS-DIYVFSGL----------ITAYLESGFLRDAIECYRLTKEH 95

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
                  T    L   +K+    LVW  Y + +E GY         L+ +F  +G++   
Sbjct: 96  KFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLA 155

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +   + + GL P   +FN L++ + +  N      L + M A    PD +TY  +ING
Sbjct: 156 QSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLING 215

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A  +F+++ + G VP+ V +TT+I G CK G +  A +++ +M+ + L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+  +L++A+ L  EM  KG     +TY TLI G C  G  + A+   +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRK 335

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 152/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYAPSVVT 418


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 145/292 (49%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y + +E GY
Sbjct: 79  ITAYLESGFLRDAVECYRLTREHKFWLPFDTCRKVLEHLMKLKYFKLVWGFYEEFLECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L   FC +G +     +   + + GL P   ++N L++ +    +     +
Sbjct: 139 PASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFK 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K   A  +F+++  +G VP+ V +TT+I G C
Sbjct: 199 LKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L +A  L  EM  KG     +
Sbjct: 259 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKGLKPDKI 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 319 TYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 370



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +       C+ G I  A   F  +
Sbjct: 109 TCRKVLEHLMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAI 168

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  +KL   +  SG          LI   C + K+
Sbjct: 169 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKM 228

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
               EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 229 DXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 288

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 289 IYGLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I  +C  G   +   
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSK 408

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM   G    V+TYN L+ G
Sbjct: 409 LLKEMQXDGHAPSVVTYNVLMNG 431


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 144/292 (49%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +    E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 62  ITAYLESGFLRDAIECYRLTXEHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 121

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 122 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +ING CK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 241

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDKI 301

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  D A+   + M Q+    D + Y  LI G C EG+ V+
Sbjct: 302 TYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVD 353



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 151/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 92  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAI 151

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   ++ SG          LI   C + K 
Sbjct: 152 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKX 211

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++ +PD  TY  +
Sbjct: 212 DDANELFDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTL 271

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI +  
Sbjct: 272 IYGLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENX 331

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +E  Y ++I G C      +A+++ +EML  G      TY  +I   C  G   +   
Sbjct: 332 RLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 391

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/200 (23%), Positives = 82/200 (41%), Gaps = 30/200 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A   +D     G  P+ 
Sbjct: 242 KNGRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKGLKPDK 300

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G ++ AF    ++ +          N  L                 D
Sbjct: 301 ITYTTLIDGCCKEGDLDSAFEHXKRMIQE---------NXRL-----------------D 334

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
            +    LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +  + S+LL 
Sbjct: 335 EVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 394

Query: 259 TMVARNRAPDNFTYEEVING 278
            M      P   TY  ++NG
Sbjct: 395 EMQRDGHVPSVVTYNVLMNG 414


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 159/364 (43%), Gaps = 30/364 (8%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA-------------------MDF 128
           L++RFF+W     GF     +  +L   L  AR +  A                    D 
Sbjct: 114 LALRFFEWAKGRIGFQHTSEAYCILVHILFCARFYSDANAVLKELICLRRVLPSWDVFDL 173

Query: 129 LDSTG--FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           L +T     P     +     L E G++EEA   F K+++  VF   ++ N+ L    K+
Sbjct: 174 LWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKV 233

Query: 187 DRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            R DL  K + D+  +G          +I   C +G +     L  Q+ E G  P+   +
Sbjct: 234 GRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTY 293

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N LI    +         +   M   +  PD  TY  +IN  CK  +  +A+   +++K 
Sbjct: 294 NSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKA 353

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G  P+ V Y+T I   CK G L +A K + +M    L PNE+TY S+I   C+  NL E
Sbjct: 354 NGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAE 413

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A +L +E+L  G     VTY  L+ GLC  GR  EA  +F  M   G+  +  TY  L+ 
Sbjct: 414 ALKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVH 473

Query: 418 GYCK 421
           G+ K
Sbjct: 474 GFIK 477



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 113/443 (25%), Positives = 190/443 (42%), Gaps = 70/443 (15%)

Query: 43  IAKQVCKITRTKPRWE------QTLLSDIPSFNFNDPLFFR----EFLKQQNNVLLSIRF 92
           + K++  + R  P W+       T    +P F   D LF        L++ +   L +R 
Sbjct: 154 VLKELICLRRVLPSWDVFDLLWATRNVCVPGFGVFDALFSALIELGMLEEASECFLKMRK 213

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLC 149
           F+         P   SCN L   L +     ++  F    G +    S+  Y   I  LC
Sbjct: 214 FRVF-------PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNIMIDYLC 266

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLI 200
           + G +E A   F+++KE G    I T+NS + G  K+   D    ++          D+I
Sbjct: 267 KEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVI 326

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI  FC   ++ + +E L ++  +GL P    ++  I  FC++   G + E +   
Sbjct: 327 TYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKE---GMLQEAIKFF 383

Query: 261 VARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           V   R    P+ FTY  +I+  CK+    EA ++  ++ + G   + V YT ++ GLC+ 
Sbjct: 384 VDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLCEE 443

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + +A +++  M++ G+ PN+ TY +++HG+ +   +E AK + KEM +K      + Y
Sbjct: 444 GRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLY 503

Query: 378 NTLIAGLC-----------------------------------LHGRTDEAYHLFEEMAQ 402
            T++ GLC                                     G+  EA  L EEM  
Sbjct: 504 GTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD 563

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
            G+    +TY  LI G CK G +
Sbjct: 564 LGLIATEVTYCALIDGLCKSGLV 586



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++ N L +   +      A +FL    + G  PN  +   +I   C+ G+++EA   
Sbjct: 323 PDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKF 382

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           F  ++ + +  +  T+ S                          LI A C  G ++E  +
Sbjct: 383 FVDMRRVALTPNEFTYTS--------------------------LIDANCKAGNLAEALK 416

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ ++L+ G+      +  L+   CE+       E+   M+    AP+  TY  +++G  
Sbjct: 417 LVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFI 476

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K+++   A  +  ++KE+   PD ++Y T++ GLC    L +A+ +  E+   G+  N  
Sbjct: 477 KAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAV 536

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            Y +++  Y +     EA  L +EMLD G   T VTY  LI GLC  G   EA H F  M
Sbjct: 537 IYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRM 596

Query: 401 AQKGIFRDVITYNTLIQGYCK 421
           ++ G+  +V  Y  L+ G CK
Sbjct: 597 SEIGLQPNVAVYTALVDGLCK 617



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 159/349 (45%), Gaps = 13/349 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +I+FF  +      +P+  +   L D+  +A     A+  ++     G   N  +    +
Sbjct: 379 AIKFFVDMR-RVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALL 437

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
             LCE G ++EA   F  +   GV  + +T+ + + G IK    +    +          
Sbjct: 438 DGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIK 497

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            DL+  G ++   CN+ ++ E   L+ ++ E G+      +  L+  + +         L
Sbjct: 498 PDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTL 557

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M+         TY  +I+GLCKS    EA   F  + E G  P+  +YT ++ GLCK
Sbjct: 558 LEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCK 617

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
                 A+K++ EM+ KG++P++  Y ++I G  +  NL+EA  L   M++ G       
Sbjct: 618 NNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHA 677

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y  LI GL   G+  +A +L +EM  KG+  D + Y  LI+ Y   GK+
Sbjct: 678 YTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKV 726



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 26/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G   ++V+   L D L E    K A +   +    G +PN  +    +    ++  +E A
Sbjct: 425 GIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYA 484

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++KE  +   +  + + L G     R +    L  ++ ESG          L+ A
Sbjct: 485 KDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDA 544

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK-------KNFGRVSELLHTMV 261
           +   G+ +E   LL ++L+ GL+     +  LI   C+         +FGR+SE+     
Sbjct: 545 YFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEI----- 599

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P+   Y  +++GLCK+     A ++F+++ ++G +PD + YT +I G  K G L 
Sbjct: 600 --GLQPNVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQ 657

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +   MI  G+  + + Y ++I G      +++A+ L  EM+ KG     V Y  LI
Sbjct: 658 EALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLI 717

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGI 405
                 G+ DEA  L  EMA++G+
Sbjct: 718 KKYYALGKVDEALELQNEMAKRGM 741



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/192 (21%), Positives = 83/192 (43%), Gaps = 26/192 (13%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+SGL++EA   F ++ E+G+  ++  + +                          
Sbjct: 577 IDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTA-------------------------- 610

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +       +L  ++L+ G++P+  A+  LI    +  N      L   M+   
Sbjct: 611 LVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIG 670

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D   Y  +I GL  S +  +A  + +++  +G +PD V+Y  +I     +G + +A 
Sbjct: 671 MELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEAL 730

Query: 325 KMWFEMIHKGLL 336
           ++  EM  +G++
Sbjct: 731 ELQNEMAKRGMI 742


>gi|357450627|ref|XP_003595590.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
 gi|355484638|gb|AES65841.1| hypothetical protein MTR_2g049740 [Medicago truncatula]
          Length = 859

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 103/376 (27%), Positives = 171/376 (45%), Gaps = 48/376 (12%)

Query: 98  SHYGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  P L SC+ L   LV   E R   +  D +  TG  P+     + +   C+ G +
Sbjct: 183 SRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQIVGTGIVPDVYMCSIVVNAHCQVGRV 242

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           + A     K+ + G+  ++ T+N  + G +     + V ++   + E G          L
Sbjct: 243 DVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGVERVLRLMSERGVSRNVVTCTML 302

Query: 206 IQAFCNDGKVSEGYELLRQVLED------------------------------------G 229
           ++ +C  GK+ E  +LLR+V ED                                    G
Sbjct: 303 MRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQMGRMEDAVRIRDEMLRVG 362

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           L       N LI  +C+         +   MV  N  PD ++Y  +++G C+  K  +A+
Sbjct: 363 LKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSYNTLLDGYCREGKVSKAF 422

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +  ++   G  P  V Y TVI GL  +G   DA  +W  M+ +G+ PNE +  +M+  +
Sbjct: 423 MLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCTMLDCF 482

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            ++ + + A  L KE+L +G+ ++TV +NT+I+GLC  G+  EA  +F+ M + G+  D 
Sbjct: 483 FKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDE 542

Query: 410 ITYNTLIQGYCKEGKI 425
           ITY TL  GYCK G +
Sbjct: 543 ITYRTLSDGYCKNGNV 558



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 165/340 (48%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+   V+ N +   L +      A    D +   G SP+  +        C++G ++EA
Sbjct: 502 GFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEA 561

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWK-----LYHDLIESGYLIQA 208
           F     ++   +  SI+ +NS + G  KI    D TDL+ +     L  +++  G LI  
Sbjct: 562 FQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISG 621

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C++ K+ + + L  +++E G  P     +K++S           + +L  M+  +    
Sbjct: 622 WCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSLYRDDRISEATVILDKMLDFDILA- 680

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGY---VPDTVMYTTVIHGLCKMGWLGDARK 325
              + +  + L K+   LEA ++ + L +      + + ++Y   I GLCK G L +AR 
Sbjct: 681 --VHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNNIVYNIAIDGLCKSGKLDEARS 738

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   ++ +G LP+ +TY ++IH      N++EA +L  EML+KG       YN LI GLC
Sbjct: 739 VLSVLMSRGFLPDNFTYCTLIHACSVSGNVDEAFKLRDEMLEKGLIPNITIYNALINGLC 798

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G  D A  LF ++ QKG+  + +TYN LI  YC+ G +
Sbjct: 799 KLGNIDRAQRLFYKLYQKGLVPNAVTYNILIGCYCRIGDL 838



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 162/343 (47%), Gaps = 13/343 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           L S  G S ++V+C +L     +      A K+  +  +      +     + +   C+ 
Sbjct: 286 LMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVDGYCQM 345

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT---------DLVWKLYHDLIES 202
           G +E+A     ++  +G+  ++   N+ + G  K+ +           + W L  D    
Sbjct: 346 GRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDWNLKPDCYSY 405

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             L+  +C +GKVS+ + L  ++L DG+ P    +N +I    +  ++     L H MV 
Sbjct: 406 NTLLDGYCREGKVSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVE 465

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R   P+  +   +++   K      A  ++ ++  RG+   TV + T+I GLCKMG L +
Sbjct: 466 RGVTPNEISCCTMLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLME 525

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++  M   GL P+E TY ++  GYC+  N++EA ++   M  +    +   YN+LI 
Sbjct: 526 AGAVFDRMKELGLSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLID 585

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GL    + ++   L  EM  +G+  +V+TY TLI G+C E K+
Sbjct: 586 GLFKIRKLNDVTDLLVEMQTRGLSPNVVTYGTLISGWCDEQKL 628



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/376 (23%), Positives = 153/376 (40%), Gaps = 55/376 (14%)

Query: 101 GFSPDLVSCNVLFDS------LVEA-RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           G   ++V CN L         + EA R F   +D+       P+  S    +   C  G 
Sbjct: 362 GLKVNMVICNTLIKGYCKLGQVCEAERVFVGMVDW----NLKPDCYSYNTLLDGYCREGK 417

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           + +AF    ++   G+  ++ T+N+ + G + +   D    L+H ++E G          
Sbjct: 418 VSKAFMLCEEMLGDGITPTVVTYNTVIKGLVDVGSYDDALHLWHLMVERGVTPNEISCCT 477

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++  F   G       L +++L  G      AFN +IS  C+         +   M    
Sbjct: 478 MLDCFFKMGDSDRAMMLWKEILGRGFTKSTVAFNTMISGLCKMGKLMEAGAVFDRMKELG 537

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD  TY  + +G CK+    EA+++   ++ +       MY ++I GL K+  L D  
Sbjct: 538 LSPDEITYRTLSDGYCKNGNVQEAFQIKGVMERQAMSASIEMYNSLIDGLFKIRKLNDVT 597

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM  +GL PN  TY ++I G+C    L++A  L+ EM+++G+    V  + +++ L
Sbjct: 598 DLLVEMQTRGLSPNVVTYGTLISGWCDEQKLDKAFHLYFEMIERGFTPNVVVCSKIVSSL 657

Query: 385 CLHGRTDEAYHLFEEM------------------------AQK-----------GIFRDV 409
               R  EA  + ++M                        AQK               + 
Sbjct: 658 YRDDRISEATVILDKMLDFDILAVHNKCSDKLVKNDLTLEAQKIADSLDKSDICNSLSNN 717

Query: 410 ITYNTLIQGYCKEGKI 425
           I YN  I G CK GK+
Sbjct: 718 IVYNIAIDGLCKSGKL 733



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 92/191 (48%), Gaps = 1/191 (0%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F+ L+  F E+        +   M    R P   +   ++  L +  +   A  VF+ +
Sbjct: 158 VFDMLMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGEGRVAVMVFDQI 217

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
              G VPD  M + V++  C++G +  A ++  +M+ +GL PN  TYN +++GY    + 
Sbjct: 218 VGTGIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDF 277

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF-RDVITYNT 414
           E  +R+ + M ++G     VT   L+ G C  G+ DEA  L  E+ +  +   D   Y  
Sbjct: 278 EGVERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGV 337

Query: 415 LIQGYCKEGKI 425
           L+ GYC+ G++
Sbjct: 338 LVDGYCQMGRM 348



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 108/223 (48%), Gaps = 3/223 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL-HTMVAR 263
           L++AF   G       +  ++   G VP   + + L+ +  +K   GRV+ ++   +V  
Sbjct: 162 LMKAFAERGMTKHALYVFDEMSRIGRVPGLRSCSFLLGKLVQKGE-GRVAVMVFDQIVGT 220

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD +    V+N  C+  +   A  V   + + G  P+ V Y  +++G    G     
Sbjct: 221 GIVPDVYMCSIVVNAHCQVGRVDVAMEVLEKMVKEGLEPNVVTYNGLVNGYVGRGDFEGV 280

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM-LDKGYGETTVTYNTLIA 382
            ++   M  +G+  N  T   ++ GYC+   ++EA++L +E+  D+        Y  L+ 
Sbjct: 281 ERVLRLMSERGVSRNVVTCTMLMRGYCKKGKMDEAEKLLREVEEDELLVVDERVYGVLVD 340

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C  GR ++A  + +EM + G+  +++  NTLI+GYCK G++
Sbjct: 341 GYCQMGRMEDAVRIRDEMLRVGLKVNMVICNTLIKGYCKLGQV 383


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 152/317 (47%), Gaps = 12/317 (3%)

Query: 121 AFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
            +K AM  LD     G +P+  +  + +  +C+ G +++A      L   G   +  ++N
Sbjct: 7   GYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYN 66

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLED 228
             L G    +R +   +L  ++ + G          LI   C  G V    E+L Q+ + 
Sbjct: 67  IVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKY 126

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P + ++N L+  FC++K   +    L  MV+R   PD  +Y  ++  LC+S +   A
Sbjct: 127 GCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVA 186

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             + + LK++G  P  + Y TVI GL K G   +A ++  EM+ KGL P+  TY+++  G
Sbjct: 187 VELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAG 246

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            CR D +E+A R   ++ D G    TV YN +I GLC    T  A  LF  M   G   +
Sbjct: 247 LCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPN 306

Query: 409 VITYNTLIQGYCKEGKI 425
             TY  LI+G   EG I
Sbjct: 307 ESTYTILIEGLAYEGLI 323



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 145/329 (44%), Gaps = 30/329 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  +I F + L S YG  P+ VS N++   L  A  ++ A   M  +   G  PN 
Sbjct: 39  QEGRVDDAIEFLKNLPS-YGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNV 97

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  LC  GL+E A     ++ + G   +  ++N                     
Sbjct: 98  VTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNP-------------------- 137

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+ AFC   K+ +    L  ++  G  P+  ++N L++  C         ELLH
Sbjct: 138 ------LLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLH 191

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +  AP   +Y  VI+GL K+ K  EA  + N++  +G  PD + Y+T+  GLC+  
Sbjct: 192 QLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRED 251

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + DA + + ++   G+ PN   YN++I G C+      A  L   M+  G      TY 
Sbjct: 252 RIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYT 311

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            LI GL   G   EA  L +E+  +G+ R
Sbjct: 312 ILIEGLAYEGLIKEARDLLDELCSRGVVR 340



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 57/217 (26%), Positives = 108/217 (49%)

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C      +  +LL ++ + G  P+   +N +++  C++       E L  + +    P
Sbjct: 1   ATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 60

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  +Y  V+ GLC + +  +A  +  ++ ++G  P+ V +  +I  LC+ G +  A ++ 
Sbjct: 61  NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 120

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            ++   G  PN  +YN ++H +C+   +++A      M+ +G     V+YNTL+  LC  
Sbjct: 121 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 180

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G  D A  L  ++  KG    +I+YNT+I G  K GK
Sbjct: 181 GEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGK 217



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 93/181 (51%)

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C++  + +  +LL  M  +   PD  TY  V+NG+C+  +  +A     +L   G  P+T
Sbjct: 3   CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNT 62

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V Y  V+ GLC      DA ++  EM  KG  PN  T+N +I   CR   +E A  + ++
Sbjct: 63  VSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQ 122

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +   G    +++YN L+   C   + D+A    + M  +G + D+++YNTL+   C+ G+
Sbjct: 123 IPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGE 182

Query: 425 I 425
           +
Sbjct: 183 V 183


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 26/293 (8%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           + G+ P+ ++    I  LC+ G    A   F K+ E G    + T+++            
Sbjct: 3   ARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYST------------ 50

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                         +I + C D +V+E  ++   +   G+ P    +N LI   C    +
Sbjct: 51  --------------IIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRW 96

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
              S +L+ M++ N  P+  T+  +IN  CK     EA  V   + E G  P+ V Y+++
Sbjct: 97  REASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSL 156

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           ++G      + +ARK++  MI KG  P+ ++YN +I+GYC+   + EAK+L  EM+ +G 
Sbjct: 157 MNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL 216

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               V+YNTLI GLC  GR  EA+ LF+ M   G   D+ TY+ L+ G+CK+G
Sbjct: 217 TPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQG 269



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/325 (28%), Positives = 150/325 (46%), Gaps = 29/325 (8%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+ +   + + L    E  A       +   G  P+  +    I  LC+   + EA
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FS +K  G+  +I T+NS                          LIQ  CN  +  E
Sbjct: 65  LDIFSYMKAKGISPNIFTYNS--------------------------LIQGLCNFSRWRE 98

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +L +++   ++P    F+ LI+ FC++ N      +L TM      P+  TY  ++N
Sbjct: 99  ASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMN 158

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G     +  EA ++F+ +  +G  PD   Y  +I+G CK   +G+A++++ EMIH+GL P
Sbjct: 159 GYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTP 218

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  +YN++I G C++  L EA  L K ML  G      TY+ L+ G C  G   +A+ LF
Sbjct: 219 DIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLF 278

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
             M    +  +++ YN LI   CK 
Sbjct: 279 RAMQSTYLKPNMVMYNILIDAMCKS 303



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 116/221 (52%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C  G+      L +++ E G  P+   ++ +I   C+ +      ++   M A+ 
Sbjct: 16  IINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKG 75

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P+ FTY  +I GLC   +  EA  + N++     +P+ V ++ +I+  CK G + +AR
Sbjct: 76  ISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEAR 135

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M   G+ PN  TY+S+++GY     + EA++L   M+ KG      +YN LI G 
Sbjct: 136 GVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGY 195

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   R  EA  LF EM  +G+  D+++YNTLI G C+ G++
Sbjct: 196 CKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRL 236



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 101/197 (51%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P+   +  +I+  C+       + L   M      PD  TY  +I+ LCK R+  EA
Sbjct: 5   GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +F+ +K +G  P+   Y ++I GLC      +A  M  EM+   ++PN  T++ +I+ 
Sbjct: 65  LDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINI 124

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C+  N+ EA+ + K M + G     VTY++L+ G  L     EA  LF+ M  KG   D
Sbjct: 125 FCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPD 184

Query: 409 VITYNTLIQGYCKEGKI 425
           V +YN LI GYCK  +I
Sbjct: 185 VFSYNILINGYCKAKRI 201



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 81/318 (25%), Positives = 139/318 (43%), Gaps = 25/318 (7%)

Query: 40  YTEIAKQVCKITRT-------KPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           YT I   +CKI  T       K   E     D+ +++        + L +   V  ++  
Sbjct: 13  YTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYST-----IIDSLCKDRRVNEALDI 67

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
           F ++ +  G SP++ + N L   L     ++ A   L+   S    PN  +  L I   C
Sbjct: 68  FSYMKAK-GISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFC 126

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           + G + EA      + EMGV  ++ T++S + G           KL+  +I  G      
Sbjct: 127 KEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVF 186

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI  +C   ++ E  +L  +++  GL P+  ++N LI   C+        +L   M
Sbjct: 187 SYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNM 246

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +     PD  TY  +++G CK     +A+R+F  ++     P+ VMY  +I  +CK   L
Sbjct: 247 LTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAMCKSRNL 306

Query: 321 GDARKMWFEMIHKGLLPN 338
            +ARK++ E+  +GL PN
Sbjct: 307 KEARKLFSELFVQGLQPN 324


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/337 (30%), Positives = 167/337 (49%), Gaps = 16/337 (4%)

Query: 104 PDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P   S + L +S V  +    AF V +  +   GF  N  +  L ++  C+SG   +A  
Sbjct: 92  PCFTSLSALIESFVNTQKPSFAFGV-LGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMD 150

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFC 210
            F  +K   +     ++N+ + G  K  R     +L+ ++         +    LI  FC
Sbjct: 151 LFCMMKRNCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFC 210

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +G V EG+ LL ++ + GL  +   ++ LIS FC K +  R  EL + M+ +N  P+  
Sbjct: 211 KNGDVEEGFGLLEEMEKMGLEGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVV 270

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  ++N LCK +K  EA ++ + +      PD V YT +  GL K G   DA K+   M
Sbjct: 271 TYSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLM 330

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G  PN  TYN++I+G C+   +++A  + + M  KG     VTY+TL+ GLC  G+ 
Sbjct: 331 VKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYSTLVKGLCGVGKI 390

Query: 391 DEAYHLFEEMAQK--GIFRDVITYNTLIQGYCKEGKI 425
           DEA  L   +  K   I  DV  +N +IQ  CK+ ++
Sbjct: 391 DEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRL 427



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 168/374 (44%), Gaps = 51/374 (13%)

Query: 104 PDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           PD+V+  VL D L +    + A KV +D +   G  PN  +    I  LC+ G +++A  
Sbjct: 302 PDVVAYTVLADGLSKNGRASDAIKV-LDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALG 360

Query: 160 AFSKLKEMGVFGSIKTWNS---ALLGCIKIDRT-DLV----------------------- 192
               + + G    + T+++    L G  KID   DL+                       
Sbjct: 361 ILETMAKKGKKPDVVTYSTLVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQE 420

Query: 193 ----------WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                      ++Y+ ++E G+         LI  + + GK+++  EL +  ++ G+ P 
Sbjct: 421 LCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPN 480

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +  LI+  C+ +       L +   A    P    Y  ++  LC+     +A  +F 
Sbjct: 481 AATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQ 540

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           +++   + PD V +  +I G  K G +  A+++  EM++  L+P+  T++ +I+ + ++ 
Sbjct: 541 EMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLG 600

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            L+EA  L++ M+  G+    V +++L+ G  L G+T++   + ++MA K +  D    +
Sbjct: 601 QLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQMADKDVVLDSKLTS 660

Query: 414 TLIQGYCKEGKIVN 427
           T++   C   K V+
Sbjct: 661 TILACLCNMSKDVD 674



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 2/213 (0%)

Query: 215 VSEGYELLRQVLED--GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           +SE        L+D    +P  ++ N LI    + K++  V  +   M + +  P   + 
Sbjct: 38  LSESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSL 97

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I     ++K   A+ V   + +RG+  +   +  ++ G C+ G    A  ++  M  
Sbjct: 98  SALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKR 157

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
             L+P+  +YN++I+G C+   L EAK L KEM        +VT++ LI G C +G  +E
Sbjct: 158 NCLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEE 217

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + L EEM + G+  DV  Y+ LI G+C +G I
Sbjct: 218 GFGLLEEMEKMGLEGDVFVYSALISGFCSKGDI 250



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/273 (23%), Positives = 118/273 (43%), Gaps = 18/273 (6%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFK 123
           F FN  L  +E  KQ+   L   +   +     GF  ++V+ N+L D  + A    +A +
Sbjct: 412 FAFN--LVIQELCKQRR--LRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALE 467

Query: 124 VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
           +  D +DS G SPN  +  + I  LC+  ++  A   F+K +  G   ++  +N+ +   
Sbjct: 468 LWKDAVDS-GISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASL 526

Query: 184 IKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            +    +    L+          D++    +I      G V    ELL ++L   LVP+N
Sbjct: 527 CRESSVEQARNLFQEMRNANHDPDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNLVPDN 586

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             F+ LI+RF +       + L   MV+    PD   ++ ++ G     K  +   +   
Sbjct: 587 ITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVSMLQQ 646

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + ++  V D+ + +T++  LC M    D  K+ 
Sbjct: 647 MADKDVVLDSKLTSTILACLCNMSKDVDIEKIL 679



 Score = 43.9 bits (102), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 28/126 (22%), Positives = 54/126 (42%)

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           +P      T+I  L K         +  +M    + P   + +++I  +        A  
Sbjct: 56  IPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLSALIESFVNTQKPSFAFG 115

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +   ++ +G+      +N L+ G C  G + +A  LF  M +  +  D ++YNT+I G C
Sbjct: 116 VLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRNCLIPDCVSYNTVINGLC 175

Query: 421 KEGKIV 426
           K  ++V
Sbjct: 176 KGKRLV 181


>gi|297849294|ref|XP_002892528.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338370|gb|EFH68787.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 606

 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 104/365 (28%), Positives = 184/365 (50%), Gaps = 23/365 (6%)

Query: 80  LKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLV-EARAFKVAMDF--LDSTGFS 135
           L   NN    + F  +  S +YG+    +SC  L  +L+ + R+  V   +  +      
Sbjct: 161 LAYANNSRFELGFEAFKRSGYYGYKLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQ 220

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID------RT 189
           PN  +  + I  LC++G + +A      +K  G   ++ ++N+ + G  K+       + 
Sbjct: 221 PNVFTFNVVINALCKTGKMNKARDVMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKA 280

Query: 190 DLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           D V K      +  +L     LI  F  D  +    ++ +++L+  ++P    +N LI+ 
Sbjct: 281 DAVLKEMVENEVSPNLTTFNILIDGFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLING 340

Query: 244 FCEKKNFGRVSELL---HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
            C   N G+++E +     MV+    P+  TY  +ING CK+    EA  +F+ +K +G 
Sbjct: 341 LC---NGGKINEAIGMRDKMVSAGVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGT 397

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P T MY  +I   CK+G + D   +  EM  +G++P+  TYN +I G CR  N+E AK+
Sbjct: 398 RPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKK 457

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  ++ +KG  +  VT++ L+ G C  G + +A  L +EM++ G+    +TYN +++GYC
Sbjct: 458 LFDQLTNKGLPDL-VTFHILMEGYCSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYC 516

Query: 421 KEGKI 425
           KEG +
Sbjct: 517 KEGNL 521



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/448 (25%), Positives = 206/448 (45%), Gaps = 54/448 (12%)

Query: 27  RNLSIETKESQQLYTEIAKQVCKITRTK--PRWEQTLLSD-------------IPSFNFN 71
           R +S   K++  L   +A  +  IT +   PR++  +++D             +   N N
Sbjct: 10  RKISNFIKQASGL-RRLASSLATITGSPCPPRFDVAVIADLIEKQHWSKLGFHVKDINPN 68

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           +   FR+ +  + N  L +R++ WL  +   S  L     L  SL  A+ +     FLD 
Sbjct: 69  E--LFRQLISSELNPDLCLRYYTWLVKNRDISVSLELTFKLLHSLANAKRYSKIRSFLD- 125

Query: 132 TGFSPNPNSLELY--------IQCLCESGLIEEAFC-----------AFSKLKEMGVFG- 171
            GF  N +  +++           +C + +I +               F   K  G +G 
Sbjct: 126 -GFVRNGSDHQVHSIFHAISMCDNVCVNSIIADMLVLAYANNSRFELGFEAFKRSGYYGY 184

Query: 172 --SIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYE 220
             S  +    ++  +K +R+  V  LY ++I             +I A C  GK+++  +
Sbjct: 185 KLSAMSCKPLMVALLKQNRSADVEYLYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARD 244

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV---SELLHTMVARNRAPDNFTYEEVIN 277
           ++  +   G  P   ++N LI  +C+    G++     +L  MV    +P+  T+  +I+
Sbjct: 245 VMEDMKVYGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENEVSPNLTTFNILID 304

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K      + +VF ++ ++  +P+ + Y ++I+GLC  G + +A  M  +M+  G+ P
Sbjct: 305 GFWKDDNLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQP 364

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY+S+I+G+C+   ++EA  +   +  +G   TT  YN LI   C  G+ D+ + L 
Sbjct: 365 NLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALK 424

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EEM ++GI  DV TYN LI G C+ G I
Sbjct: 425 EEMEREGIVPDVGTYNCLIAGLCRNGNI 452



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 151/341 (44%), Gaps = 19/341 (5%)

Query: 100 YGFSPDLVSCNVLFDSLVEA-------RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
           YG+SP++VS N L D   +        +A  V  + +++   SPN  +  + I    +  
Sbjct: 252 YGYSPNVVSYNTLIDGYCKLGGNGKMYKADAVLKEMVENE-VSPNLTTFNILIDGFWKDD 310

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            +  +   F ++ +  V  ++ T+NS + G     + +    +   ++ +G         
Sbjct: 311 NLPGSLKVFKEMLDQDVIPNVITYNSLINGLCNGGKINEAIGMRDKMVSAGVQPNLITYH 370

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI  FC +G + E  ++   V   G  P    +N LI  +C+         L   M   
Sbjct: 371 SLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDGFALKEEMERE 430

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  TY  +I GLC++     A ++F+ L  +G +PD V +  ++ G C  G    A
Sbjct: 431 GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKG-LPDLVTFHILMEGYCSRGESRKA 489

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM-LDKGYGETTVTYNTLIA 382
             +  EM   GL P   TYN M+ GYC+  NL+ A  +  +M  ++       +YN L+ 
Sbjct: 490 AMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQ 549

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G    G+ ++A  L  EM +KG+  + ITY  + +    +G
Sbjct: 550 GYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKG 590



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/245 (21%), Positives = 108/245 (44%), Gaps = 12/245 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L++ + L +   +    K A+D  DS    G  P      + I   C+ G I++ 
Sbjct: 361 GVQPNLITYHSLINGFCKNGMMKEALDMFDSVKGQGTRPTTRMYNMLIDAYCKLGKIDDG 420

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAF 209
           F    +++  G+   + T+N  + G  +    +   KL+  L   G         L++ +
Sbjct: 421 FALKEEMEREGIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTNKGLPDLVTFHILMEGY 480

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  +   LL+++ + GL P +  +N ++  +C++ N    + +   M    R   N
Sbjct: 481 CSRGESRKAAMLLKEMSKMGLKPRHLTYNIMMKGYCKEGNLKAATNMRTQMEKERRLRMN 540

Query: 270 F-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  ++ G  +  K  +A  + N++ E+G VP+ + Y  V   +   G++ D     F
Sbjct: 541 VASYNVLLQGYSQKGKLEDANMLLNEMLEKGLVPNRITYEIVKEEMVDKGFVPDIEGHLF 600

Query: 329 EMIHK 333
            +  K
Sbjct: 601 NVSTK 605


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 180/417 (43%), Gaps = 69/417 (16%)

Query: 55  PRWEQTLLSDIPSF-NFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLF 113
           P+      S  PSF N +D LF       Q + +L +R           +P ++  N + 
Sbjct: 28  PKLHSHFHSRPPSFENVDDALF-------QFHRMLCMRH----------TPPIIQFNKIL 70

Query: 114 DSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170
           DS  + + +   +     L+     P+  +L + I C C  G I  AF   SK+ + G  
Sbjct: 71  DSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWGYQ 130

Query: 171 GSIKTWNSALLG-CIKIDRTDLVWKLYH------------DLIESGYLIQAFCNDGKVSE 217
               T  + + G C+K      V K  H            D +  G LI   C  G+   
Sbjct: 131 PDTVTLTTLIKGLCLK----GQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETRA 186

Query: 218 GYELLRQVLEDGLV--PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
             +LLR++  DG +  P    +N +I   C++K       L   M  +  + +  TY  +
Sbjct: 187 AIQLLRRI--DGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAI 244

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+G C   K  EA    N++  +   PD  +Y T++  L K G + +A+ +   ++   L
Sbjct: 245 IHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCL 304

Query: 336 LPNEYTYNSMIHGY---------------------------CRIDNLEEAKRLHKEMLDK 368
            PN  TYN++I GY                           C+I  +EEA  L+KEM  K
Sbjct: 305 KPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQK 364

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                TVTYN+LI GLC  GR   A+ L +EM  +G   +VITYN+LI G CK G++
Sbjct: 365 NMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQL 421



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/364 (28%), Positives = 173/364 (47%), Gaps = 40/364 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D VS   L + + +    + A+  L   D     PN       I CLC+  L+ EA
Sbjct: 163 GFRLDQVSYGTLINGVCKIGETRAAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEA 222

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTD-------LVWKLYH-DLIESGYLIQA 208
              FS++   G+  ++ T+++ + G CI    T+       +V K  + D+     L+ A
Sbjct: 223 CNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDA 282

Query: 209 FCNDGKVSEGYELLRQVLED---------------------------GLVPENTAFNKLI 241
              +GKV E   +L  +++                            G+ P+  ++N +I
Sbjct: 283 LHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMI 342

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           +R C+ K       L   M  +N  P+  TY  +I+GLCKS +   A+ + +++ +RG+ 
Sbjct: 343 NRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHH 402

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY-CRIDNLEEAKR 360
            + + Y ++I+GLCK G L  A  +  +M  +G+ P+ YT N ++HG  C+   L+ A+ 
Sbjct: 403 ANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQG 462

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L +++LDKGY     TYN +I G C  G  DEAY L  +M   G   + IT+  +I    
Sbjct: 463 LFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALL 522

Query: 421 KEGK 424
           ++G+
Sbjct: 523 EKGE 526



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 18/316 (5%)

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGL---IEEAFCAFSKLKEMGVFGSIKTWNS 178
           F V++  L    F PNP+  +L+            +++A   F ++  M     I  +N 
Sbjct: 9   FSVSLSTLKFPSFLPNPSLPKLHSHFHSRPPSFENVDDALFQFHRMLCMRHTPPIIQFNK 68

Query: 179 ALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
            L    K+     V  L           D      LI  FC+ G+++  + +L ++L+ G
Sbjct: 69  ILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNILINCFCHLGQINLAFSVLSKILKWG 128

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLH---TMVARNRAPDNFTYEEVINGLCKSRKRL 286
             P+      LI   C K   G+V + LH    ++A+    D  +Y  +ING+CK  +  
Sbjct: 129 YQPDTVTLTTLIKGLCLK---GQVKKALHFHDKLLAQGFRLDQVSYGTLINGVCKIGETR 185

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
            A ++   +  R   P+ VMY T+I  LCK   + +A  ++ EM  KG+  N  TY+++I
Sbjct: 186 AAIQLLRRIDGRLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAII 245

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           HG+C +  L EA     EM+ K        YNTL+  L   G+  EA ++   + +  + 
Sbjct: 246 HGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLK 305

Query: 407 RDVITYNTLIQGYCKE 422
            +VITYNTLI GY K 
Sbjct: 306 PNVITYNTLIDGYAKH 321



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 148/312 (47%), Gaps = 5/312 (1%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S ++V+ + +            A+ FL+       +P+       +  L + G ++EA
Sbjct: 233 GISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEA 292

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK-IDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
               + + +  +  ++ T+N+ + G  K +     +  +  D+     +I   C   +V 
Sbjct: 293 KNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVE 352

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   L +++ +  +VP    +N LI   C+        +L+  M  R    +  TY  +I
Sbjct: 353 EALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLI 412

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL-CKMGWLGDARKMWFEMIHKGL 335
           NGLCK+ +  +A  + N +K++G  PD      ++HGL CK   L +A+ ++ +++ KG 
Sbjct: 413 NGLCKNGQLDKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGY 472

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN YTYN +I+G+C+   L+EA  L  +M D G     +T+  +I  L   G TD+A  
Sbjct: 473 HPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEK 532

Query: 396 LFEEMAQKGIFR 407
           L  EM  +G+ +
Sbjct: 533 LLCEMIARGLLK 544


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  154 bits (390), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 150/311 (48%), Gaps = 9/311 (2%)

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F+V   F+      P+  S  + I  LC +G ++ A   F  +  +G   ++  +N+ + 
Sbjct: 441 FEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLID 500

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                +R +  + L  ++  SG+         +    C    V+   +++R++   G  P
Sbjct: 501 KLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEP 560

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +  L+ + C++K        L  MV     PD   Y   I+G  K +   +A  +F
Sbjct: 561 WIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIF 620

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            D+  RGY PD V Y T+I+G CK+  + +A  +  EM+ KGL+P+  TYN +I G+C+ 
Sbjct: 621 RDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKN 680

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            ++++A      M+ K      +TY TLI GLC  GR D+A HL+ EM  KG   + I++
Sbjct: 681 GDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF 740

Query: 413 NTLIQGYCKEG 423
             LI G CK G
Sbjct: 741 IALIHGLCKCG 751



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 10/273 (3%)

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  +KEM V     +++  + G     + DL   L+ D++  G          LI    N
Sbjct: 446 FFMVKEM-VRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSN 504

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             ++ E Y LL+++   G  P     N +    C +++     +++  M      P    
Sbjct: 505 SNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKH 564

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK ++  EA     ++   G++PD V Y+  I G  K+  +  A +++ ++ 
Sbjct: 565 YTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDIC 624

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G  P+   YN++I+G+C++  + EA  +  EM+ KG   + VTYN LI G C +G  D
Sbjct: 625 ARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDID 684

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +A+H    M  K    +VITY TLI G C  G+
Sbjct: 685 QAFHCLSRMVGKEREPNVITYTTLIDGLCNAGR 717



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 155/376 (41%), Gaps = 39/376 (10%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +Q+ V  +++ F+ +    GF+PD+   + L   L   +  + A+  L      G  P+ 
Sbjct: 315 RQSRVDKALQLFKKMQKS-GFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDI 373

Query: 139 NSLELYIQCLCES----GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
             L   I    E      LIEE      +L+++     +  +NS L G +     D  + 
Sbjct: 374 QILSKLIAYCSEEVDIYRLIEE------RLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYY 427

Query: 195 LYHDLIESGY-------------------------LIQAFCNDGKVSEGYELLRQVLEDG 229
           L   +    Y                         +I   CN GK+     L R ++  G
Sbjct: 428 LLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG 487

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
                  +N LI +            LL  M      P  FT+  +   LC+      A 
Sbjct: 488 CKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGAL 547

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +  +++  G+ P    YT ++  LCK     +A     EM+ +G LP+   Y++ I G+
Sbjct: 548 DMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGF 607

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            +I  +++A  + +++  +GY    V YNTLI G C   R  EA+ + +EM  KG+   V
Sbjct: 608 VKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSV 667

Query: 410 ITYNTLIQGYCKEGKI 425
           +TYN LI G+CK G I
Sbjct: 668 VTYNLLIDGWCKNGDI 683



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 147/331 (44%), Gaps = 19/331 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELY---IQCLCESGLIEEAFC 159
           PD  S +++ D L       +A+  F D        N L LY   I  L  S  +EE + 
Sbjct: 455 PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL-LYNNLIDKLSNSNRLEECYL 513

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL--YHDLIESGY---------LIQA 208
              ++K  G   +  T NS + GC+   R D+   L    ++   G+         L++ 
Sbjct: 514 LLKEMKGSGFRPTQFTHNS-IFGCL-CRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQ 571

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   + +E    L +++ +G +P+  A++  I  F + K   +  E+   + AR   PD
Sbjct: 572 LCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPD 631

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +ING CK ++  EA+ + +++  +G VP  V Y  +I G CK G +  A     
Sbjct: 632 VVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLS 691

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K   PN  TY ++I G C     ++A  L  EM  KG     +++  LI GLC  G
Sbjct: 692 RMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCG 751

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             D A   F EM ++    D I Y  LI  +
Sbjct: 752 WPDAALLYFREMGERET-PDTIVYVALITSF 781



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 105/221 (47%), Gaps = 3/221 (1%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
           G+ I+   + G V E   L  QV    L VP + +FN L+    +  +   V   L  M 
Sbjct: 167 GFFIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMC 226

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                PD +T   V+   C SRK  +A  VFN++  RG+V   V+   V+    K G + 
Sbjct: 227 DSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLT-FSKCGEVD 285

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A ++   M   G+  NE T+  +IHG+ R   +++A +L K+M   G+      Y+ LI
Sbjct: 286 KAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALI 345

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            GLC     ++A HL  EM + GI  D+   + LI  YC E
Sbjct: 346 GGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-AYCSE 385



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 83/368 (22%), Positives = 165/368 (44%), Gaps = 34/368 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK----VAMDFLDSTGFSPNPNSLEL 143
           ++ RFF W     GF+ +  + N +   L  AR       ++MD ++S   + +P +L  
Sbjct: 110 IAYRFFNWASDQGGFNHNCYTYNAMASCLSHARQNAPLSLLSMDIVNSR-CAMSPGALGF 168

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGV-FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           +I+CL  +GL+EEA   F ++K M +   +  ++N  L    K    DLV     ++ +S
Sbjct: 169 FIRCLGSTGLVEEANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDS 228

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G+         ++QA+CN  K  +   +  ++   G V +    + L+  F +     + 
Sbjct: 229 GWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKA 287

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            EL+  M       +  T+  +I+G  +  +  +A ++F  +++ G+ PD  +Y  +I G
Sbjct: 288 FELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGG 347

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LC    +  A  +  EM   G+ P+    + +I  YC  + ++  + + + + D      
Sbjct: 348 LCAKKEIEKALHLLSEMKELGIDPDIQILSKLI-AYCS-EEVDIYRLIEERLEDLDTEAM 405

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEE----------------MAQKGIFRDVITYNTLIQ 417
            + YN+++ GL      D+AY+L                   M ++ +  D  +++ +I 
Sbjct: 406 LLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVID 465

Query: 418 GYCKEGKI 425
           G C  GK+
Sbjct: 466 GLCNTGKL 473



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 13/217 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ +   D  V+ +A   A++ F D  + G+ P+  +    I   C+   + EA
Sbjct: 592 GFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEA 651

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++   G+  S+ T+N  + G  K    D  +             ++I    LI  
Sbjct: 652 HDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDG 711

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+  +   L  ++   G  P   +F  LI   C K  +   + L    +     PD
Sbjct: 712 LCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLC-KCGWPDAALLYFREMGERETPD 770

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              Y  +I     ++    A+ +  ++  +G  PD +
Sbjct: 771 TIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPL 807


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 90/339 (26%), Positives = 168/339 (49%), Gaps = 16/339 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI----E 155
           +P     N +  SLV+++ +   +     ++  G  PN  +  + I C C+ GLI     
Sbjct: 83  TPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIH 142

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYHDLIE-----SGYLI 206
           +AF    KL  +G      ++ + + G  K+  T    DL+ ++   L++        +I
Sbjct: 143 QAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVI 202

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C D  V++ ++L  +++  G+ P    ++ LIS F          +L + ++  N  
Sbjct: 203 YGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIK 262

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD +T+  +++G CK RK  E   VF  + ++G +PD V Y +++ G C +  +  A+ +
Sbjct: 263 PDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSI 322

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  M   G+ P+  +YN +I+G+C+I  +++A  L  EM  K      VTYN+LI GL  
Sbjct: 323 FNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSK 382

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            GR   A  L ++M  +G+  +++TYN++I    K  ++
Sbjct: 383 SGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQV 421



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 154/337 (45%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFD-----SLVEARAFKVAM--DFLDSTGFSPNPNSLELYIQCLCESGL 153
           G  P+L +CN+L        L+  +  +  +  D L + GF  +  S    I  LC+ G 
Sbjct: 116 GIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGE 175

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
              A     ++    V  +   +N+ + G  K    +  + LY +++  G          
Sbjct: 176 TRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSA 235

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  F   GK+ +  +L  +++ + + P+   FN L+  FC+ +       +   M+ + 
Sbjct: 236 LISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQG 295

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +++G C  ++   A  +FN + + G  PD   Y  +I+G CK+  +  A 
Sbjct: 296 IIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAM 355

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ EM  K ++PN  TYNS+I G  +   +  A +L  +M D+G     +TYN++I  L
Sbjct: 356 NLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDAL 415

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
               + D+A  L  +   +GI   + TY  LI G CK
Sbjct: 416 FKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK 452



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 154/379 (40%), Gaps = 67/379 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D VS   L   L +    + A+D L   D      N       I  +C+   + +A
Sbjct: 155 GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDA 214

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI-----ESGY----LIQA 208
           F  +S++   G+  ++ T+++ + G   + +      L++ +I       GY    L+  
Sbjct: 215 FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDG 274

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC D K+ EG  +   +++ G++P+   +N L+  +C  K       + +TM      PD
Sbjct: 275 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPD 334

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +K  +A  +FN++  +  +P+ V Y ++I GL K G +  A ++  
Sbjct: 335 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 394

Query: 329 EMIHKG-----------------------------------LLPNEYTY----------- 342
           +M  +G                                   + P+ YTY           
Sbjct: 395 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVE 454

Query: 343 ---------NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
                    N MIHG+C+    +EA  L  +M D       VTY   I  L  +   D+A
Sbjct: 455 GYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKA 514

Query: 394 YHLFEEMAQKGIFRDVITY 412
             LF EM  +G+     +Y
Sbjct: 515 EKLFREMITRGLLNRSASY 533



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 39/210 (18%)

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSR---------KRLE------------------ 287
            L + ++ +N  P  F + +++  L KS+         +++E                  
Sbjct: 72  SLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILIYCF 131

Query: 288 ------------AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
                       A+   + L   G+  D V Y T+IHGLCK+G    A  +   +  K +
Sbjct: 132 CQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLV 191

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             N   YN++I+G C+  ++ +A  L+ EM+ KG     VTY+ LI+G  + G+  +A  
Sbjct: 192 QLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAID 251

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LF ++  + I  D  T+N L+ G+CK+ K+
Sbjct: 252 LFNKIILENIKPDGYTFNILVDGFCKDRKM 281



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 68/143 (47%), Gaps = 4/143 (2%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  +FN L  +   P    +  ++  L K         +  +M  +G+ PN +  N +I
Sbjct: 69  DAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNILI 128

Query: 347 HGYCRID----NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           + +C++      + +A   H +++  G+    V+Y TLI GLC  G T  A  L + +  
Sbjct: 129 YCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDG 188

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           K +  + + YNT+I G CK+  +
Sbjct: 189 KLVQLNAVMYNTVIYGMCKDKHV 211


>gi|357439849|ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479250|gb|AES60453.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 772

 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 163/333 (48%), Gaps = 12/333 (3%)

Query: 104 PDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ + N L ++ V   + +     +  ++      +  +  + IQ    SG IEEA   
Sbjct: 250 PNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEKI 309

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
           F +++E  +   +  ++S +    ++      + L+ ++ +          G LI   C 
Sbjct: 310 FEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCK 369

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++     LL ++   G+      FN  +  +C +        L   M  +    D FT
Sbjct: 370 AGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFT 429

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  + NGLCK  +  EA  + N + E+G  P+ V +T  I   CK G L +A +++ +M 
Sbjct: 430 YNILANGLCKLHRYDEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDME 489

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG +PN  TYN++I  YC+ + +++A ++  EM++KG      TY++LI G C+ GR D
Sbjct: 490 KKGEVPNIITYNTLIDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVD 549

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           EA  LF EM  KGI R+V TY ++I G  KEG+
Sbjct: 550 EALKLFNEMRLKGITRNVATYTSMISGLSKEGR 582



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 165/351 (47%), Gaps = 22/351 (6%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN 139
           L ++  V+ S+  +  L   Y  S D+     +F+   E R   + MD    +       
Sbjct: 277 LMEKEQVVFSVATYSILIQWYSSSGDIEEAEKIFE---EMREKNIEMDVYVYSSMISWSR 333

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
            L          G ++ AF  F ++ +  +  +  T+ + + G  K  + +    L  ++
Sbjct: 334 RL----------GNMKRAFALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEM 383

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G           +  +C  GK+ E   L   + + G+  +   +N L +  C+   +
Sbjct: 384 QSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRY 443

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                +L++MV +   P+  T+   I   CK     EA R+F D++++G VP+ + Y T+
Sbjct: 444 DEAKCILNSMVEKGVKPNVVTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTL 503

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I   CK   +  A K+  EMI+KGLLP+ YTY+S+IHG C +  ++EA +L  EM  KG 
Sbjct: 504 IDAYCKKEKVKQAHKIKSEMINKGLLPDLYTYSSLIHGECIVGRVDEALKLFNEMRLKGI 563

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                TY ++I+GL   GR DEA+ L++EM + G+  D   + +L+  + K
Sbjct: 564 TRNVATYTSMISGLSKEGRADEAFKLYDEMMKIGLIPDDRVFTSLVGSFHK 614



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 168/371 (45%), Gaps = 31/371 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSP 136
           Q ++ L    F +  HS+    PDL +  +L   L EAR F      L     DS    P
Sbjct: 69  QPHSCLAFFHFLKTQHSNISLKPDLKAHLILISRLFEARKFATMKSILNGLVTDSDIECP 128

Query: 137 NPNSLEL-------YIQCLC--------ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
             + ++L       +++  C        ++ L +E    +  ++E G+    ++    LL
Sbjct: 129 VSSIVDLVDEFESHFVEKFCDMLFRVCSDNRLFDETIRVYDYVEEKGLVIEERSCFVLLL 188

Query: 182 GCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
              +    D   + +H ++ES            +I   C  G+V +  EL+ +++  G+V
Sbjct: 189 ALKRCGEVDFCVRFFHRMVESNKFEIRVQSLTLVIDVLCRRGEVEKAKELMDEMVGKGIV 248

Query: 232 PENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
             N   +N L++ +  +K+   V E+L  M          TY  +I     S    EA +
Sbjct: 249 KPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQVVFSVATYSILIQWYSSSGDIEEAEK 308

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F +++E+    D  +Y+++I    ++G +  A  ++ EM  + ++PN +TY ++I G C
Sbjct: 309 IFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAFALFDEMSQRDIVPNAHTYGALIGGVC 368

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +E A+ L  EM  KG     V +NT + G C  G+ DEA  L   M +KGI  DV 
Sbjct: 369 KAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGYCRRGKMDEALRLQAIMEKKGINADVF 428

Query: 411 TYNTLIQGYCK 421
           TYN L  G CK
Sbjct: 429 TYNILANGLCK 439



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 166/351 (47%), Gaps = 15/351 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELY 144
           +IR + ++    G   +  SC VL  +L         + F    ++S  F     SL L 
Sbjct: 164 TIRVYDYVEEK-GLVIEERSCFVLLLALKRCGEVDFCVRFFHRMVESNKFEIRVQSLTLV 222

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFG-SIKTWNSALLGCI-KIDR--TDLVWKLYH--- 197
           I  LC  G +E+A     ++   G+   ++ T+N+ L   + + DR   D + KL     
Sbjct: 223 IDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKDRKGVDEILKLMEKEQ 282

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
               +     LIQ + + G + E  ++  ++ E  +  +   ++ +IS      N  R  
Sbjct: 283 VVFSVATYSILIQWYSSSGDIEEAEKIFEEMREKNIEMDVYVYSSMISWSRRLGNMKRAF 342

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            L   M  R+  P+  TY  +I G+CK+ +   A  +  +++ +G   + V++ T + G 
Sbjct: 343 ALFDEMSQRDIVPNAHTYGALIGGVCKAGQMEAAEILLLEMQSKGVDLNLVIFNTTMDGY 402

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C+ G + +A ++   M  KG+  + +TYN + +G C++   +EAK +   M++KG     
Sbjct: 403 CRRGKMDEALRLQAIMEKKGINADVFTYNILANGLCKLHRYDEAKCILNSMVEKGVKPNV 462

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           VT+   I   C  G   EA  LF +M +KG   ++ITYNTLI  YCK+ K+
Sbjct: 463 VTFTMFIEIYCKEGNLAEAERLFRDMEKKGEVPNIITYNTLIDAYCKKEKV 513


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 167/338 (49%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ N L   L      K A++F D      F  +  S    I  LC+SG    A
Sbjct: 118 GYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHLDQVSYGTLINGLCKSGETRAA 177

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGC-----IKIDRTDL-----VWKLYHDLIESGYLIQ 207
                K++ + +        +A++       + ID  DL     V K+Y +++    LI 
Sbjct: 178 LQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIY 237

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G++ E   LL ++  + + P    FN LI   C++    + + +L  M+ +   P
Sbjct: 238 GFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEP 297

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++G    ++  +A  VFN +  RG  P+   Y+ +I+GLCK   + +A K++
Sbjct: 298 NVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLF 357

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  K + PN  TY+S+I G C+   + +   L  E+ ++G     +TYN+L+ GLC +
Sbjct: 358 KEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKN 417

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + D+A  L  +M  +GI  D+ TY TL+ G CK G++
Sbjct: 418 HQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNGRL 455



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 97/363 (26%), Positives = 172/363 (47%), Gaps = 20/363 (5%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGF 134
            F+   ++ + S      +++H   +P +   N +  SLV+   FK+A+ F   ++  G 
Sbjct: 28  SFIDNLDDAVSSFNHILHMNNH---TPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGI 84

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CI--KIDRT-- 189
            P   +  + I C      +  AF   +K+ ++G      T N+ L G C+  K+     
Sbjct: 85  QPEMFTFNILINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALN 144

Query: 190 ---DLVWKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV---PENTAFNKLIS 242
               ++ K +H D +  G LI   C  G+     +LLR++  +GL+   P+   +  +I 
Sbjct: 145 FHDHVIRKRFHLDQVSYGTLINGLCKSGETRAALQLLRKI--EGLLLVRPDVIMYTAIID 202

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC+ K      +L   M+ +   P+  T+  +I G C   +  EA  + N++      P
Sbjct: 203 SFCKDKLVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNP 262

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           +   +  +I GLCK G +  A  +   MI +G+ PN  TY S++ GY  +  + +AK + 
Sbjct: 263 NVYTFNILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVF 322

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             +  +G      +Y+ +I GLC +   DEA  LF+EM  K +  + +TY++LI G CK 
Sbjct: 323 NTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKS 382

Query: 423 GKI 425
           G+I
Sbjct: 383 GRI 385



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 165/335 (49%), Gaps = 13/335 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG----FSPNPNSLELYIQCLCESGLIEEA 157
           F  D VS   L + L ++   + A+  L          P+       I   C+  L+ +A
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVIDA 213

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYH--------DLIESGYLIQA 208
           +  +S++    ++ ++ T+NS + G CI     + V  L          ++     LI  
Sbjct: 214 YDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDG 273

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V +   +L  +++ G+ P    +  L+  +   K   +   + +T+  R   P+
Sbjct: 274 LCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPN 333

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +INGLCK++   EA ++F ++  +   P+TV Y+++I GLCK G + D   +  
Sbjct: 334 VHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLID 393

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+ ++G   N  TYNS+++G C+   +++A  L  +M D+G      TY TL+ GLC +G
Sbjct: 394 EINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVDGLCKNG 453

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R  +A  +++++  KG   ++  Y  +I G CKEG
Sbjct: 454 RLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEG 488



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 154/324 (47%), Gaps = 29/324 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+ N L          K A+  L+    +   PN  +  + I  LC+ G +++A   
Sbjct: 227 PNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFNILIDGLCKEGEVKKATSV 286

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
            S + + GV  ++ T+ S                    L++  +L++      +V++   
Sbjct: 287 LSVMIKQGVEPNVVTYTS--------------------LMDGYFLVK------EVNKAKH 320

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +   +   G+ P   +++ +I+  C+ K      +L   M  +N  P+  TY  +I+GLC
Sbjct: 321 VFNTISLRGVTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLC 380

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           KS +  + + + +++  RG   + + Y ++++GLCK   +  A  +  +M  +G+ P+  
Sbjct: 381 KSGRISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMS 440

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY +++ G C+   L++A+R+++++L KGY      Y  +I GLC  G  DEA  L  +M
Sbjct: 441 TYTTLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQM 500

Query: 401 AQKGIFRDVITYNTLIQGYCKEGK 424
              G   D +TY TLI    K  K
Sbjct: 501 EDNGCMPDAVTYETLISALFKNNK 524



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/271 (24%), Positives = 126/271 (46%), Gaps = 29/271 (10%)

Query: 101 GFSPDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+   L D    + E    K   + +   G +PN +S  + I  LC++ +++EA
Sbjct: 294 GVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRGVTPNVHSYSVMINGLCKNKMVDEA 353

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F ++    +  +  T++S                          LI   C  G++S+
Sbjct: 354 VKLFKEMHLKNMTPNTVTYSS--------------------------LIDGLCKSGRISD 387

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            ++L+ ++   G       +N L++  C+     +   LL  M      PD  TY  +++
Sbjct: 388 VWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYTTLVD 447

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK+ +  +A R++ DL  +GY  +  MYT +I+GLCK G+  +A  +  +M   G +P
Sbjct: 448 GLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMP 507

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           +  TY ++I    + +   +A +L +EM+ +
Sbjct: 508 DAVTYETLISALFKNNKNGKAVKLLREMIAR 538



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/176 (25%), Positives = 81/176 (46%), Gaps = 1/176 (0%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           VS   H +   N  P  F + ++++ L K      A      ++ +G  P+   +  +I+
Sbjct: 37  VSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNILIN 96

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
               +  L  A  M  +++  G  P+  T N+++ G C    ++EA   H  ++ K +  
Sbjct: 97  CFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKRFHL 156

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKIVN 427
             V+Y TLI GLC  G T  A  L  ++    + R DVI Y  +I  +CK+  +++
Sbjct: 157 DQVSYGTLINGLCKSGETRAALQLLRKIEGLLLVRPDVIMYTAIIDSFCKDKLVID 212


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 168/355 (47%), Gaps = 13/355 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPN 139
           Q +V  ++   + L S +G  PD+VS N +   L  A+ +    + ++        PN  
Sbjct: 205 QGSVDEALHLLRDLPS-FGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 263

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +    I  LC +GL E      +++ E G    I+ + + + G  K    ++  ++ + +
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 323

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G          L++  C+  +  E  ELL ++ +     ++  FN L+  FC+    
Sbjct: 324 PSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLV 383

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            RV ELL  M+ R   PD  TY  VING CK     EA  +   +   G  P+T+ YT V
Sbjct: 384 DRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIV 443

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           + GLC      DA  +  +MI +G   N  T+N++I+  C+   +E+A  L K+ML  G 
Sbjct: 444 LKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGC 503

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++Y+T+I GL   G+TDEA  L   M  KG+  + I Y+++     +EG+I
Sbjct: 504 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRI 558



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 144/325 (44%), Gaps = 9/325 (2%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
           N +      A   + A     +    PN  +    ++ LC  G I +A     ++   G 
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGC 153

Query: 170 FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE 220
                 ++  L    +        ++  DL   G          ++ A C+ G V E   
Sbjct: 154 APIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALH 213

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LLR +   G  P+  ++N ++   C  K +G V EL+  MV     P+  T+  +I+ LC
Sbjct: 214 LLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLC 273

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           ++      + V   + E G  PD  MY T+I G+CK G L  A ++   M   GL PN  
Sbjct: 274 RNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVV 333

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+++ G C  +  EE + L  EM DK      VT+N L+   C +G  D    L E+M
Sbjct: 334 CYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 393

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            ++G   DVITY T+I G+CKEG I
Sbjct: 394 LERGCMPDVITYTTVINGFCKEGLI 418



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 179/382 (46%), Gaps = 21/382 (5%)

Query: 61  LLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRF--FQWLHSHY---GFSPDLVSCNVLFD 114
           LL D+PSF    D + +   LK    + ++ R+   Q L          P++V+ N L  
Sbjct: 214 LLRDLPSFGCEPDVVSYNAVLK---GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLIS 270

Query: 115 SLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
            L     F+   + L      G +P+       I  +C+ G +E A    +++   G+  
Sbjct: 271 YLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKP 330

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELL 222
           ++  +N+ L G    +R +   +L  ++ +            L+  FC +G V    ELL
Sbjct: 331 NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELL 390

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            Q+LE G +P+   +  +I+ FC++        LL +M A    P+  +Y  V+ GLC +
Sbjct: 391 EQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSA 450

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            + ++A  + + + ++G   + + + T+I+ LCK G +  A ++  +M+  G  P+  +Y
Sbjct: 451 ERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 510

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           +++I G  +    +EA  L   M++KG    T+ Y+++ + L   GR ++   +F+ +  
Sbjct: 511 STVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQD 570

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
             I  D + YN +I   CK G+
Sbjct: 571 TTIRSDAVLYNAVISSLCKRGE 592



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N L   L  A  ++   + L        P    +  + +   C++GL++ 
Sbjct: 326 YGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR 385

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++ E G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 386 VIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 445

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+  +  +  +L+ Q+++ G       FN LI+  C+K    +  ELL  M+    +P
Sbjct: 446 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 505

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G +    +M+
Sbjct: 506 DLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMF 565

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    E A      M+  G      TY  LI GL   
Sbjct: 566 DNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASE 625

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  +  E+  KG  R
Sbjct: 626 GFVKEAQEMLTELCSKGALR 645


>gi|413916119|gb|AFW56051.1| hypothetical protein ZEAMMB73_517553 [Zea mays]
          Length = 663

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 105/370 (28%), Positives = 180/370 (48%), Gaps = 28/370 (7%)

Query: 67  SFNFND---PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
           SF +N     L  R F+K+ +++ L +        + G  P +V+ N +   L+++   +
Sbjct: 302 SFTYNPLITGLLARGFVKKVDDLQLEME-------NEGIMPTVVTYNAMIHGLLQSGQIE 354

Query: 124 VA-MDFLD--STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
            A   F++  + G  P+  +    +   C++G  +EA   F  L+  G+  ++ T+N  +
Sbjct: 355 AAQAKFVEMRAMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILI 414

Query: 181 LGCIKIDRTDLVWKLYHDLIESGYLIQAFC---------NDGKVSEGYELLRQVLEDGLV 231
            G  ++   +   +L  +++E G L   +          N   ++   E   ++L  GL 
Sbjct: 415 DGYCRLGDLEEARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLR 474

Query: 232 PENTAFNKLISRFCEKKNFGRVS---ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           P+  A+N   +R C +   G +S   +L   ++    + D  TY  +I+GLCK+    +A
Sbjct: 475 PDCFAYN---TRICAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDA 531

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +   +   G  PD + YT +IH  C+ G+L +ARK + +MI  GL P+  TY  +IH 
Sbjct: 532 EELMMQMISNGLQPDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHA 591

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YCR  NL  A    ++ML++G     +TYN LI  LC  GRT  AY  F EM ++G+  +
Sbjct: 592 YCRRGNLYSAYGWFRKMLEEGVEPNEITYNVLIHALCRMGRTQLAYRHFYEMLERGLVPN 651

Query: 409 VITYNTLIQG 418
             TY  LI G
Sbjct: 652 KYTYTLLIDG 661



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 148/328 (45%), Gaps = 14/328 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           N L   L+ AR F   +D L    ++ G  P   +    I  L +SG IE A   F +++
Sbjct: 306 NPLITGLL-ARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMR 364

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVS 216
            MG+   + T+NS L G  K         L+ DL  +G          LI  +C  G + 
Sbjct: 365 AMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLE 424

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   L  +++E G +P+   +  L+       +     E    M+++   PD F Y   I
Sbjct: 425 EARRLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRI 484

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
                     +++++   +   G   DTV Y  +I GLCK G L DA ++  +MI  GL 
Sbjct: 485 CAEITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNLKDAEELMMQMISNGLQ 544

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY  +IH +C    L EA++   +M+  G   + VTY  +I   C  G    AY  
Sbjct: 545 PDCITYTCLIHAHCERGFLREARKFFNDMISDGLPPSAVTYTVIIHAYCRRGNLYSAYGW 604

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           F +M ++G+  + ITYN LI   C+ G+
Sbjct: 605 FRKMLEEGVEPNEITYNVLIHALCRMGR 632



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 106/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI      G V +  +L  ++  +G++P    +N +I    +             M A  
Sbjct: 308 LITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMRAMG 367

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  ++NG CK+  + EA  +F DL+  G  P  + Y  +I G C++G L +AR
Sbjct: 368 LLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLEEAR 427

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+ +G LP+ YTY  ++ G   + +L   +    EML KG       YNT I   
Sbjct: 428 RLKEEMVEQGCLPDVYTYTILMKGSHNVCSLAMTREFFDEMLSKGLRPDCFAYNTRICAE 487

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G   +++ L E +  +GI  D +TYN LI G CK G +
Sbjct: 488 ITLGDISKSFQLREVIMLEGISSDTVTYNILIDGLCKTGNL 528



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/267 (26%), Positives = 110/267 (41%), Gaps = 71/267 (26%)

Query: 223 RQVLEDGLVPEN-----------------------------------TAFNKLISRFCEK 247
           R++   G+ P+                                      +N L+  F ++
Sbjct: 185 REMASHGVAPDVKDCNKVLRVLRDAARWDDMSAVHAEMLQLGIEPSIVTYNTLLDSFSKE 244

Query: 248 KNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKS---------------RKRLEAYR 290
               ++  LL  M AR  +  P++ TY  VI GL +                 K+  ++ 
Sbjct: 245 GRKDKIDMLLKEMEARGSSCLPNDVTYNVVIAGLARKGYLEEAAELVEEMRLSKKASSFT 304

Query: 291 ---VFNDLKERGYV----------------PDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +   L  RG+V                P  V Y  +IHGL + G +  A+  + EM 
Sbjct: 305 YNPLITGLLARGFVKKVDDLQLEMENEGIMPTVVTYNAMIHGLLQSGQIEAAQAKFVEMR 364

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GLLP+  TYNS+++GYC+  N +EA  L  ++   G   T +TYN LI G C  G  +
Sbjct: 365 AMGLLPDVITYNSLLNGYCKAGNQKEALLLFGDLRRAGLAPTVLTYNILIDGYCRLGDLE 424

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQG 418
           EA  L EEM ++G   DV TY  L++G
Sbjct: 425 EARRLKEEMVEQGCLPDVYTYTILMKG 451



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 73/200 (36%), Gaps = 50/200 (25%)

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           AR+  PD        + LC S         F ++   G  PD      V+  L       
Sbjct: 168 ARDATPDT------CSTLCLS--------AFREMASHGVAPDVKDCNKVLRVLRDAARWD 213

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM---------------- 365
           D   +  EM+  G+ P+  TYN+++  + +    ++   L KEM                
Sbjct: 214 DMSAVHAEMLQLGIEPSIVTYNTLLDSFSKEGRKDKIDMLLKEMEARGSSCLPNDVTYNV 273

Query: 366 -----LDKGYG---------------ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
                  KGY                 ++ TYN LI GL   G   +   L  EM  +GI
Sbjct: 274 VIAGLARKGYLEEAAELVEEMRLSKKASSFTYNPLITGLLARGFVKKVDDLQLEMENEGI 333

Query: 406 FRDVITYNTLIQGYCKEGKI 425
              V+TYN +I G  + G+I
Sbjct: 334 MPTVVTYNAMIHGLLQSGQI 353


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++ESGY
Sbjct: 61  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILESGY 120

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +  +     +   + + GL P   ++N L++ +    +      
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 181 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 241 KNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 300

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY  LI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 301 TYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 352



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 134/281 (47%), Gaps = 8/281 (2%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC   ++ EA      +      GS     + +L      R+D+   ++  LI + Y
Sbjct: 8   IHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAVILETKGTQRSDIY--VFSGLI-TAY 64

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L   F  D    E Y L R+      VP +T   K++    + K F  V      ++   
Sbjct: 65  LESGFLRDA--IECYRLTRE--HKFWVPFDTC-RKVLEHLMKLKYFKLVWGFYKEILESG 119

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                + +  +++  CK R    A  VF+ + + G  P  V Y T+++G  ++G L +  
Sbjct: 120 YPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGF 179

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M   G+ P+ YTY+ +I+G C+   +++A  L  EML KG     VT+ TLI G 
Sbjct: 180 RLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGH 239

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C +GR D A  ++++M  + +  D+ITYNTLI G CK+G +
Sbjct: 240 CKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDL 280


>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic-like [Glycine max]
          Length = 836

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 161/338 (47%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L      +   + A   + ++ S+G S N +     I  L E      A
Sbjct: 390 GMKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSA 449

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKID----------RTDLVWKLYHDLIESGYLIQ 207
               +KL    +  S       ++G  K +          +   V  L  + + S  L+ 
Sbjct: 450 LKIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLH 509

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + E +E+L+Q+LE GL+ +  ++N LI   C+        +L   MV +   P
Sbjct: 510 GLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQP 569

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +TY  ++ GL    K  + +R+ ++ KE G+VP+   Y  ++ G CK   + DA K +
Sbjct: 570 DTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEGYCKADRIEDAVKFF 629

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             + ++ +  +   YN +I  YCRI N+ EA +L   M  +G   T  TY++LI G+C  
Sbjct: 630 KNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMCCI 689

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR DEA  +FEEM  +G+  +V  Y  LI G+CK G++
Sbjct: 690 GRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQM 727



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G + N  +    +  LCE G +EE F    ++ E G+     ++N+ + GC K  + +  
Sbjct: 496 GLAANTVTSNALLHGLCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEA 555

Query: 193 WKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           +KL  ++++           +L++   + GK+ + + LL +  E G VP    +  L+  
Sbjct: 556 FKLKEEMVQQEFQPDTYTYNFLMKGLADMGKIDDVHRLLHEAKEYGFVPNVYTYALLLEG 615

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+        +    +        +  Y  +I   C+     EA+++ + +K RG +P 
Sbjct: 616 YCKADRIEDAVKFFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPT 675

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y+++IHG+C +G + +A++++ EM ++GLLPN + Y ++I G+C++  ++    +  
Sbjct: 676 CATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQMDIVGSILL 735

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EM   G     +TY  +I G C  G   EA  L  EM + GI  D +TYN L +GYCKE
Sbjct: 736 EMSSNGIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYNALQKGYCKE 794



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 170/377 (45%), Gaps = 47/377 (12%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD--STGFSPNPNSLELYIQCLCESGL 153
           + S  G  P L +CN+L  SLV+A     + +  D    G +P+  +    I   C+ G 
Sbjct: 211 MFSKRGVFPCLKTCNLLLSSLVKANELHKSYEVFDLACQGVAPDVFTFTTAINAFCKGGR 270

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GY 204
           + +A   F K++ +GVF ++ T+N+ + G  K  R +   +    ++ S         G 
Sbjct: 271 VGDAVDLFCKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALRFKDRMVRSKVNPSVVTYGV 330

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI          E  E+L ++   G  P    FN LI  +C K + G    +   M  + 
Sbjct: 331 LISGLMKLEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKG 390

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVF-------------------NDLKER-GYVP-- 302
             P+  T+  ++ G C+S +  +A +V                    + L ER G+V   
Sbjct: 391 MKPNFVTFNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSYVIHRLMERSGFVSAL 450

Query: 303 -------------DTVMYTTVIHGLCKMGWLGDARKMWFEMIH-KGLLPNEYTYNSMIHG 348
                           + T ++ GLCK     +A ++WF++   KGL  N  T N+++HG
Sbjct: 451 KIVTKLLSGNIRVSDSLLTPLVVGLCKCEGHSEAIELWFKLAAVKGLAANTVTSNALLHG 510

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C   N+EE   + K+ML+KG     ++YNTLI G C  G+ +EA+ L EEM Q+    D
Sbjct: 511 LCERGNMEEVFEVLKQMLEKGLLLDRISYNTLIFGCCKWGKIEEAFKLKEEMVQQEFQPD 570

Query: 409 VITYNTLIQGYCKEGKI 425
             TYN L++G    GKI
Sbjct: 571 TYTYNFLMKGLADMGKI 587



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 120/278 (43%), Gaps = 34/278 (12%)

Query: 141 LELYIQCLCESGLIEEAFCAFS---KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
           L+L +  LC       + CAF       + GVF  +KT N                    
Sbjct: 186 LDLLLHILCSQFKCLGSRCAFDIFVMFSKRGVFPCLKTCN-------------------- 225

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  L+ +     ++ + YE+     + G+ P+   F   I+ FC+    G   +L 
Sbjct: 226 ------LLLSSLVKANELHKSYEVFDLACQ-GVAPDVFTFTTAINAFCKGGRVGDAVDLF 278

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCK 316
             M      P+  TY  VI+GL KS +  EA R F D   R  V P  V Y  +I GL K
Sbjct: 279 CKMEGLGVFPNVVTYNNVIDGLFKSGRFEEALR-FKDRMVRSKVNPSVVTYGVLISGLMK 337

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +    +A ++  EM   G  PNE  +N++I GYCR  ++ EA R+  EM  KG     VT
Sbjct: 338 LEMFEEANEVLVEMYSMGFAPNEVVFNALIDGYCRKGDMGEALRVRDEMAMKGMKPNFVT 397

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKG--IFRDVITY 412
           +NTL+ G C   + ++A  +   +   G  +  DV +Y
Sbjct: 398 FNTLLQGFCRSNQMEQAEQVLVYILSSGLSVNMDVCSY 435


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 20/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +   + + L +     +A      ++  G   N  +    I  LC+   + EA
Sbjct: 75  GCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEA 134

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-------------LYHDLIESGY 204
              FS +K   +  +I T+ S + G     R    WK             +  +++    
Sbjct: 135 LDIFSYMKAKDISPTIFTYTSLIQGLCNFSR----WKEASALLNEMTSLNIMPNVVTFNV 190

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  FC +GKV     +L+ + E G+ P+   +N L+  +          +L   M+ + 
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG 250

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F+Y  +ING CK+++  EA ++FN++  +G  P+ V Y T+IHGLC++G L +A+
Sbjct: 251 CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQ 310

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M   G LPN YTY  ++ G+C+   L +A RL + M         V YN L+  +
Sbjct: 311 DLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  G   +A  LF E+   G+  +V  Y T+I G CKEG
Sbjct: 371 CKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEG 409



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+   L + L +   F  A++  D   + G  P+  +    I  LC+ G    A
Sbjct: 40  GLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALA 99

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIESGY----LIQA 208
              F K++E G   ++ T+++ +    K  R +    ++      D+  + +    LIQ 
Sbjct: 100 AGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQG 159

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  +  E   LL ++    ++P    FN L+  FC++        +L TM      PD
Sbjct: 160 LCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPD 219

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G     + +EA ++F+ +  +G  PD   Y+ +I+G CK   + +A++++ 
Sbjct: 220 VVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFN 279

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMIH+G  PN  +YN++IHG C++  L EA+ L K M   G      TY  L+ G C  G
Sbjct: 280 EMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQG 339

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A+ LF  M    +  +++ YN L+   CK G +
Sbjct: 340 YLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNL 376



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 158/339 (46%), Gaps = 44/339 (12%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           ++  G SPN  +L + I C C+   ++  F   +K  ++G+  +I T+ + + G  K+ +
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                +L+ D++  G          +I   C  G+ +    L +++ E G       ++ 
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYST 120

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL-------------------- 279
           LI   C+ +      ++   M A++ +P  FTY  +I GL                    
Sbjct: 121 LIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLN 180

Query: 280 ---------------CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                          CK  K L A  V   + E G  PD V Y ++++G      + +AR
Sbjct: 181 IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEAR 240

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K++  MI KG  P+ ++Y+ +I+GYC+   ++EAK+L  EM+ +G     V+YNTLI GL
Sbjct: 241 KLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGL 300

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C  GR  EA  LF+ M   G   ++ TY  L+ G+CK+G
Sbjct: 301 CQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQG 339



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 13/335 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++  F ++ +    SP + +   L   L     +K A   L+   S    PN  +  + +
Sbjct: 134 ALDIFSYMKAK-DISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLV 192

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
              C+ G +  A      + EMGV   + T+NS + G           KL+  +I  G  
Sbjct: 193 DTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCK 252

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C   ++ E  +L  +++  G  P N ++N LI   C+        +L
Sbjct: 253 PDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDL 312

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M      P+ +TY  +++G CK     +A+R+F  ++     P+ VMY  +++ +CK
Sbjct: 313 FKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCK 372

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L DAR+++ E+   GL PN   Y ++I+G C+   L+EA    + M D G      +
Sbjct: 373 SGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFS 432

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           YN +I G   H     A HL  EM  +G   D  T
Sbjct: 433 YNVIIRGFLQHKDESRAVHLIGEMRDRGFITDAGT 467



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 114/222 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   +V  G+ +L + ++ GL P    F  LI+   +   F +  EL   MVAR 
Sbjct: 16  LINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQAVELFDDMVARG 75

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD++TY  +INGLCK  +   A  +F  ++E G   + V Y+T+IH LCK   + +A 
Sbjct: 76  CQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEAL 135

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M  K + P  +TY S+I G C     +EA  L  EM         VT+N L+   
Sbjct: 136 DIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTF 195

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G+   A  + + M + G+  DV+TYN+L+ GY    ++V
Sbjct: 196 CKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVV 237



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 70/198 (35%), Positives = 101/198 (51%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           GL P     N LI+ FC+ +       +L   +     P   T+  +INGL K  K  +A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +F+D+  RG  PD   YTT+I+GLCK+G    A  ++ +M   G   N  TY+++IH 
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHS 124

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+   + EA  +   M  K    T  TY +LI GLC   R  EA  L  EM    I  +
Sbjct: 125 LCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPN 184

Query: 409 VITYNTLIQGYCKEGKIV 426
           V+T+N L+  +CKEGK++
Sbjct: 185 VVTFNVLVDTFCKEGKVL 202


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 164/326 (50%), Gaps = 20/326 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F++++E +  +++ DF   +G         L I  L ESG + +A   F   K+ 
Sbjct: 47  SASDVFEAILETKGTQIS-DFYVFSG---------LMIAYL-ESGFVRDAVQCFRLTKQH 95

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
            +     T    L   ++     LVW  Y +++E GY         L+Q FC +G++   
Sbjct: 96  KIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLA 155

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +   + + GL P   +FN LI+ + +  +      L   M A    PD +TY  +ING
Sbjct: 156 QSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILING 215

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  EA  +FN++ + G VP+ V +TT+IHG CK   +  A +++ +M+ +GL P+
Sbjct: 216 LCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPD 275

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+   L++   L  EM+  G     ++Y TLI G C  G  + A  L  
Sbjct: 276 LITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRN 335

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGK 424
           +M Q+ I  D + Y  LI   C+EG+
Sbjct: 336 KMIQESIRLDDVAYTALISCLCREGR 361



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 151/316 (47%), Gaps = 12/316 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L+E R FK+  DF         P SL  +   +Q  C+ G +  A   F  +
Sbjct: 103 TCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            + G+  S+ ++N+ + G IK+   D  ++L   +  SG          LI   C +GK+
Sbjct: 163 TKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKL 222

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  EL  ++L++GLVP    F  LI   C+ +      E+   M+++  +PD  TY  +
Sbjct: 223 DEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTL 282

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK  +  + + + +++   G  PD + YTT+I G CK G L  A ++  +MI + +
Sbjct: 283 IYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESI 342

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I   CR     +A+++ +EML  G      TY  +I   C    +  A  
Sbjct: 343 RLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASK 402

Query: 396 LFEEMAQKGIFRDVIT 411
           L  EM + G    V+T
Sbjct: 403 LLREMQRDGPVPGVVT 418



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 3/225 (1%)

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTM 260
           SG +I A+   G V +  +  R   +  + VP +T   K++    E + F  V +    +
Sbjct: 70  SGLMI-AYLESGFVRDAVQCFRLTKQHKIRVPFDTC-RKVLEHLMEFRYFKLVWDFYKEV 127

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +        + +  ++   CK  +   A  VF+ + + G  P  V + T+I+G  K+G L
Sbjct: 128 LECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDL 187

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +  ++   M   G  P+ YTY+ +I+G C+   L+EA  L  EMLD G     VT+ TL
Sbjct: 188 DEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTL 247

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C + + D A  ++++M  +G+  D+ITYNTLI G CK+G++
Sbjct: 248 IHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGEL 292



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 82/193 (42%), Gaps = 30/193 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNP 138
           +   V L++  ++ + S  G SPDL++ N L   L +    K   D +D     G  P+ 
Sbjct: 253 KNEKVDLAMEIYKQMLSQ-GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDK 311

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S    I   C+ G +E A               ++  N  +   I++D  D+ +     
Sbjct: 312 ISYTTLIDGSCKEGDLEIA---------------LELRNKMIQESIRLD--DVAYTA--- 351

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G+  +  ++LR++L  GL P+N  +  +I+ FC+K++    S+LL 
Sbjct: 352 ------LISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLR 405

Query: 259 TMVARNRAPDNFT 271
            M      P   T
Sbjct: 406 EMQRDGPVPGVVT 418


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 153/328 (46%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V  N L D    A   + A+     +D    SPN  +    I  LC+SG +E A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FS++ E G+  ++ T+ +                          LIQ  CN+G +  
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTA--------------------------LIQGQCNEGHLQC 300

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            + LL  +  +GLVP +  F+ LI   C+++        L ++V +    +   Y  +I+
Sbjct: 301 AFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLID 360

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK+ K   A  +   +   G+VPD   Y+++I GLC+   L  A  M  +M+ KG+  
Sbjct: 361 GLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQA 420

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  +I    R    E  K++  +M+  G     VTY   +   C  GR ++A  + 
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMI 480

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +M  +G+F +++TYNTLI+GY   G +
Sbjct: 481 VQMVDRGVFPNLVTYNTLIRGYANLGLV 508



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 138/295 (46%), Gaps = 26/295 (8%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S GF PN       I   C +G +E A   F  +       +++T+              
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTE------------ 252

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                         LI   C  GKV     L  +++E GL P    +  LI   C + + 
Sbjct: 253 --------------LIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                LLH M      P+++T+  +I+ LCK  K  EA      L ++G   + V+YT++
Sbjct: 299 QCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSL 358

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I GLCK G +  A ++  +MI +G +P+ ++Y+S+I G CR   L +A  + ++M++KG 
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + VTY  +I  L     ++    +F++M   GI  D++TY   ++ YC+EG++
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRM 473



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 106/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI A+C  G +    + L  +L  GL P++ A+   +  +C          +   M  R 
Sbjct: 78  LINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRG 137

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                FTY  +++GL  +    EA  VF  ++     PDT +Y T++HGLC+ G   +A 
Sbjct: 138 CLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  E +  G  PN   YN++I GYC    +E A ++ + M          TY  LI GL
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGL 257

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G+ + A  LF  M + G+  +V+TY  LIQG C EG +
Sbjct: 258 CKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 136/331 (41%), Gaps = 10/331 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           P L   N L  +L   R F   M+ L S   + N  +    I   C +G I  A    + 
Sbjct: 39  PPLRCLNTLLMALARHRMFP-DMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTS 97

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC---------NDGK 214
           L   G+      + S +LG  +        +++  +   G L  AF            G 
Sbjct: 98  LLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGM 157

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V E   +   +  D   P+   +  ++   CE         LL   ++    P+   Y  
Sbjct: 158 VREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNA 217

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G C + +   A +VF  +      P+   YT +IHGLCK G +  A  ++  M+  G
Sbjct: 218 LIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG 277

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L PN  TY ++I G C   +L+ A RL   M   G      T++ LI  LC   + +EA 
Sbjct: 278 LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQ 337

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                + +KG+  + + Y +LI G CK GKI
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKI 368



 Score = 46.6 bits (109), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 40/212 (18%), Positives = 86/212 (40%), Gaps = 32/212 (15%)

Query: 101 GFSPDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G     V+  ++ D LV    +   K   D + +TG +P+  +  ++++  CE G +E+A
Sbjct: 417 GIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDA 476

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++ + GVF ++ T+N+                          LI+ + N G VS+
Sbjct: 477 ESMIVQMVDRGVFPNLVTYNT--------------------------LIRGYANLGLVSQ 510

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF---TYEE 274
            +     ++  G  P   ++  L+    +K +     ++      ++    N+    ++ 
Sbjct: 511 AFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYDEIVWKI 570

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +I GL +     E   + + +KE GY P   +
Sbjct: 571 LIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTI 602


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 18/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N +   L+   +A A +V    + + G  P+  +    +   C++G ++EA
Sbjct: 338 GIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEA 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L+  G+  ++ T+N+ + G  ++       +L  +++E G          L+  
Sbjct: 398 LWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNG 457

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS---ELLHTMVARNR 265
                 ++   E   ++L  GL P+  A+N   +R C +          +L   M+ +  
Sbjct: 458 SRKVRNLAMAREFFDEMLSKGLQPDCFAYN---TRICAELTLSSTPMAFQLREVMMLKGI 514

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +I+GLCK+    +A R+   +   G  PD + YT +IH  C+ G L +ARK
Sbjct: 515 YPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARK 574

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M+  GL P+  TY  ++H  CR  NL  A    ++MLD G     +TYN LI  LC
Sbjct: 575 LLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALC 634

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + GRT  A+  F EM ++G+  +  TY  LI G C+EG
Sbjct: 635 MTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREG 672



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 114/436 (26%), Positives = 180/436 (41%), Gaps = 61/436 (13%)

Query: 46  QVCKITRTKPRWEQT-----------LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQ 94
           +V ++ R   RW+             +   I ++N     F +E  K + ++LL     +
Sbjct: 207 RVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLK----E 262

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLEL--YIQCLCESG 152
                 GFS + V+ NV+   L      + A+  +DS   S   +S      I  L E G
Sbjct: 263 METQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKASSFTYNPLITALLERG 322

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESG 203
            + +A     +++  G+  ++ T+N+ + G +K ++ +             L  D+I   
Sbjct: 323 FVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYN 382

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            L+  +C  G + E   LL  +   GL P    +N LI  +C   +      L   MV +
Sbjct: 383 SLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQ 442

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFND----------------------------- 294
              PD  TY  ++NG  K R    A   F++                             
Sbjct: 443 GCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMA 502

Query: 295 --LKE----RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             L+E    +G  PDTV Y  +I GLCK G L DA+++  +M+  GL P+  TY  +IH 
Sbjct: 503 FQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHA 562

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           +C    L EA++L   M+  G   + VTY  L+   C  G    AY  F +M   GI  +
Sbjct: 563 HCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPN 622

Query: 409 VITYNTLIQGYCKEGK 424
            ITYN LI   C  G+
Sbjct: 623 EITYNVLIHALCMTGR 638



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 145/331 (43%), Gaps = 12/331 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L +   +A   K A+  L      G +P   +    I   C  G + EA
Sbjct: 373 GLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEA 432

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++ E G F  + T+   + G  K+    +  + + +++  G     F  + ++  
Sbjct: 433 RRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICA 492

Query: 218 GYEL--------LRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              L        LR+V+   G+ P+   +N +I   C+  N      L   MV+    PD
Sbjct: 493 ELTLSSTPMAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPD 552

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C+     EA ++ N +   G  P  V YT ++H  C+ G L  A   + 
Sbjct: 553 CITYTCLIHAHCERGLLREARKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFR 612

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G+ PNE TYN +IH  C       A R   EML++G      TY  LI G C  G
Sbjct: 613 KMLDVGIEPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREG 672

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
              +A  L+ EM Q GI  D  T+N L +G+
Sbjct: 673 NWADAIRLYFEMHQNGIPPDYCTHNALFKGF 703



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/329 (28%), Positives = 143/329 (43%), Gaps = 36/329 (10%)

Query: 104 PDLVSCNVLFDS-LVEARAFKVAMDFLD----STGFSPNPNSLELYIQCLCESGLIEEAF 158
           P +V+ N L DS L E R  + +M   +      GFS N  +  + I  L   G +E A 
Sbjct: 235 PTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAV 294

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
                ++ +    S  T+N                           LI A    G V + 
Sbjct: 295 KLVDSMR-LSKKASSFTYNP--------------------------LITALLERGFVRKA 327

Query: 219 YELLRQVLEDGLVPENTAFNKLISRF--CEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
             L  ++  +G++P    +N +I     CE+    +V      M A    PD  TY  ++
Sbjct: 328 EALQMEMENEGIMPTVVTYNAIIHGLLKCEQAEAAQVK--FAEMRAMGLLPDVITYNSLL 385

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           N  CK+    EA  +  DL+  G  P  + Y T+I G C++G L +AR++  EM+ +G  
Sbjct: 386 NRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCF 445

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY  +++G  ++ NL  A+    EML KG       YNT I        T  A+ L
Sbjct: 446 PDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQL 505

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            E M  KGI+ D +TYN +I G CK G +
Sbjct: 506 REVMMLKGIYPDTVTYNVIIDGLCKTGNL 534



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/205 (26%), Positives = 100/205 (48%), Gaps = 3/205 (1%)

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCK 281
           ++L+  + P    +N L+  F ++      S LL  M  +    + ++ T+  VI+ L +
Sbjct: 227 EMLQLRVEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAR 286

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
                 A ++ + ++       +  Y  +I  L + G++  A  +  EM ++G++P   T
Sbjct: 287 EGHLENAVKLVDSMRLSKKA-SSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVT 345

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN++IHG  + +  E A+    EM   G     +TYN+L+   C  G   EA  L  ++ 
Sbjct: 346 YNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLR 405

Query: 402 QKGIFRDVITYNTLIQGYCKEGKIV 426
           + G+   V+TYNTLI GYC+ G + 
Sbjct: 406 RAGLAPTVLTYNTLIDGYCRLGDLA 430



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 59/159 (37%), Gaps = 36/159 (22%)

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  PD      V+  L       D R ++ EM+   + P   TYN+++  + +    +EA
Sbjct: 197 GVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEA 256

Query: 359 KRLHKEMLDKGYG------------------------------------ETTVTYNTLIA 382
             L KEM  +G G                                     ++ TYN LI 
Sbjct: 257 SMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMRLSKKASSFTYNPLIT 316

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L   G   +A  L  EM  +GI   V+TYN +I G  K
Sbjct: 317 ALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLK 355



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G+ P+    N ++         ++ + ++ EML      T VTYNTL+      GR DEA
Sbjct: 197 GVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEA 256

Query: 394 YHLFEEM-AQKGIFR-DVITYNTLIQGYCKEGKIVN 427
             L +EM  Q G F  + +T+N +I    +EG + N
Sbjct: 257 SMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLEN 292


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 159/336 (47%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L ++ ++   F+   + L   +      N  +  L I+    SG I EA
Sbjct: 245 GIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEA 304

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F K+ E GV   I  + S +    K+      + L+ +L E G          LI  
Sbjct: 305 EKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHG 364

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G++     L+ ++   GL      FN LI+ +C+K        +   M  +    D
Sbjct: 365 TCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFEND 424

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +  GLCK  +  EA R    + E+G  P+ V +T +I   CK G L +A +++ 
Sbjct: 425 IFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVEAERVFQ 484

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  KG  PN  TYN++I GY +   L+EA RL  EM   G      TY TL+ G C+ G
Sbjct: 485 DMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFG 544

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + +EA  L  E+ +KG+   ++TY  +I G  KEG+
Sbjct: 545 KVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGR 580



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 167/339 (49%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           H G   D  SC V   +L  +    +++ F              S+ + I  LC+ G +E
Sbjct: 173 HNGLKIDDRSCIVCLLALKRSDQMVMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVE 232

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKID---------RTDLVWKLYHDLIESGYLI 206
            A     ++   G+  ++ T+N+ +   IKI          R   + K+ ++      LI
Sbjct: 233 RAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLI 292

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           + + + GK++E  ++  ++LE G+  +   F  +IS  C+  N  R   L   +  R   
Sbjct: 293 EWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLV 352

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            +  TY  +I+G C S +   A  + N+++ +G   + V++ T+I+G CK G + +A +M
Sbjct: 353 ANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRM 412

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M  KG   + +TYN++  G C+++  EEAKR    M++KG     V++  +I   C 
Sbjct: 413 QDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCK 472

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G   EA  +F++M +KG   +V+TYNTLI GY K+GK+
Sbjct: 473 EGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKL 511



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 108/461 (23%), Positives = 188/461 (40%), Gaps = 78/461 (16%)

Query: 39  LYTEIAKQVCKI---TRTKP-RWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQ 94
           L  EIA+++ KI   +  KP   + +LLS++ S+  N  L       +       + FF+
Sbjct: 22  LSQEIAEKITKILIKSGLKPLETKSSLLSNLDSYTTNLVLSNPNLPTRS-----CLNFFK 76

Query: 95  WLHSHYGF---SPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN-------------- 137
            L  +       PDL +  +L   L +AR F V  + L       N              
Sbjct: 77  CLQKNQSLICHKPDLRAHVILISRLFKARKFVVMKNVLTCYAMDKNLRCSVSDFVSLIDN 136

Query: 138 ----PNSLE----LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
               P  +E    +  +   ++ + EE F  F  +   G+    ++    LL   + D+ 
Sbjct: 137 RFHEPKFVEKLCDMLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQM 196

Query: 190 DLVWKLYHDLIE---------SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
            +    +  ++E            +I   C  G+V    +L+ ++   G+ P    +N L
Sbjct: 197 VMSLGFFKKMVEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTL 256

Query: 241 ISRFCEKKNFGRVSELL-----------------------------------HTMVARNR 265
           ++ + +  +F  V+E+L                                     M+ R  
Sbjct: 257 VNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERGV 316

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D   +  +I+  CK      A+ +F++L ERG V +   Y  +IHG C  G L  A  
Sbjct: 317 EADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEM 376

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM  +GL  N   +N++I+GYC+   ++EA R+   M  KG+     TYNT+  GLC
Sbjct: 377 LVNEMQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLC 436

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              R +EA      M +KG+  + +++  +I  +CKEG +V
Sbjct: 437 KLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLV 477



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 10/274 (3%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           RAF +  D L+  G   N ++    I   C SG ++ A    ++++  G+  ++  +N+ 
Sbjct: 338 RAFAL-FDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTL 396

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGL 230
           + G  K    D   ++   + + G+         +    C   +  E    L  ++E G+
Sbjct: 397 INGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGV 456

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            P   +F  +I   C++ N      +   M  +   P+  TY  +I+G  K  K  EAYR
Sbjct: 457 DPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYR 516

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           + ++++  G   D   YTT++HG C  G + +A  +  E+  KGL  +  TY ++I G  
Sbjct: 517 LKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLS 576

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +    EEA RL+ EM+  G       Y +L+A L
Sbjct: 577 KEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANL 610



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 55/230 (23%), Positives = 97/230 (42%), Gaps = 35/230 (15%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
            Q +    GF  D+ + N +   L +    + A  +L +    G  PN  S  + I   C
Sbjct: 412 MQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHC 471

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           + G + EA   F  +K+ G   ++ T+N+                          LI  +
Sbjct: 472 KEGNLVEAERVFQDMKKKGEKPNVVTYNT--------------------------LIDGY 505

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNRA 266
              GK+ E Y L  ++   G+  +   +  L+   C    FG+V E   LL+ +  +  A
Sbjct: 506 SKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECV---FGKVEEALTLLNEVCRKGLA 562

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
               TY  +I+GL K  +  EA+R+++++   G  PD  +YT+++  L K
Sbjct: 563 ISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLVANLHK 612


>gi|255551759|ref|XP_002516925.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223544013|gb|EEF45539.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 901

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 166/336 (49%), Gaps = 14/336 (4%)

Query: 103 SPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           +P+L + NVL D L +A     AFKV  D +   G  PN  ++ + I  LC++  ++EA 
Sbjct: 404 APNLSTYNVLIDMLCKAGEVEAAFKV-RDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEAC 462

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
             F  +          T+ S + G  K  R D  ++LY  +++S           LI++F
Sbjct: 463 SIFEGMNHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSF 522

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G+  +G+++ ++++  G  P+    N  +    +    G+   L   + +R   PD 
Sbjct: 523 FKCGRKEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDV 582

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            +Y  +I+GL K+    E Y +F  +KE+G V DT  Y T I G CK G +  A ++  E
Sbjct: 583 MSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEE 642

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KG  P   TY S+I G  +ID L+EA  L +E    G     V Y++LI G    GR
Sbjct: 643 MKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGR 702

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEAY + EE+ QKG+  +V T+N L+    K  +I
Sbjct: 703 IDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 738



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 158/342 (46%), Gaps = 14/342 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           +H   SPD V+   L D L +      A+++    LDS    PN       I+   + G 
Sbjct: 469 NHKICSPDEVTFCSLIDGLGKQGRVDDAYRLYEQMLDSDKI-PNAVVYTSLIKSFFKCGR 527

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            E+    F ++   G    ++  N+ +    K   T     L+ ++   G+         
Sbjct: 528 KEDGHKIFKEMIHRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSI 587

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI      G   E YEL   + E G V +  A+N  I  FC+     +  +LL  M  + 
Sbjct: 588 LIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKG 647

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
           R P   TY  VI+GL K  +  EAY +F + K  G   + V+Y+++I G  K+G + +A 
Sbjct: 648 RQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGFGKVGRIDEAY 707

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  E++ KGL PN YT+N ++    + + + EA    + M +       +TY+ LI GL
Sbjct: 708 LIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGL 767

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C   + ++A+  ++EM ++G+  + ITY T+I G  K G I 
Sbjct: 768 CRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIA 809



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 18/321 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           H G SPDL   N   D + +A      +   + + S GF P+  S  + I  L ++G   
Sbjct: 540 HRGCSPDLRLLNAYMDCVFKAGETGKGRALFEEIKSRGFIPDVMSYSILIHGLVKAGFAR 599

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLI 206
           E +  F  +KE G       +N+ + G  K  + +  ++L  ++         +  G +I
Sbjct: 600 ETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKAYQLLEEMKTKGRQPTVVTYGSVI 659

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVAR 263
                  ++ E Y L  +   +GL      ++ LI  F      GR+ E   ++  ++ +
Sbjct: 660 DGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDGF---GKVGRIDEAYLIMEELMQK 716

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+ +T+  +++ L K+ +  EA   F ++K     P+ + Y+ +I+GLC++     A
Sbjct: 717 GLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPNHITYSILINGLCRVRKFNKA 776

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              W EM  +GL PN  TY +MI G  +  N+ EA  L +     G    + +YN +I G
Sbjct: 777 FVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFERFKANGGVPDSASYNAIIEG 836

Query: 384 LCLHGRTDEAYHLFEEMAQKG 404
           L    R  EAY +FEE   KG
Sbjct: 837 LSYSRRAMEAYKIFEETRMKG 857



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/439 (23%), Positives = 173/439 (39%), Gaps = 64/439 (14%)

Query: 42  EIAKQVCKITRTK---PRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHS 98
           E+   VCKI  +    P  E  L   + S   +        L++  +V  +I +F+W   
Sbjct: 64  EVVDDVCKILESGNWGPDVENALSLFVESPKTD---LVIGVLRRAKDVNQAISYFRWTER 120

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-------TGFSPNPNS-LELYIQCLCE 150
                 D   C   +DSL+   A  V  D+ +         GF P+  + +EL + C+ +
Sbjct: 121 K----TDQALCPEAYDSLLLVMAKNVKFDYFEQILGEMSIAGFGPSTKTCIELILSCI-K 175

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
           S  + E F     +++     +   + + +     +  +D++  L+H + E GY      
Sbjct: 176 SNKLREGFDLIQCMRKFKFRPAFSAYTTLIGALSSVQESDIMLTLFHQMQELGYEVSVHL 235

Query: 205 --------------------------------------LIQAFCNDGKVSEGYELLRQVL 226
                                                  I  F   GKV   ++   ++ 
Sbjct: 236 FTTVIRVFAREGRLDAALSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIK 295

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             GL+P++  +  +I   C+        E+   M      P  + Y  +I G   + K  
Sbjct: 296 SHGLLPDDVTYTSMIGVLCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFD 355

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EAY +    K RG +P  + Y  ++  L K G LG+A +  FE + K   PN  TYN +I
Sbjct: 356 EAYSLLERQKARGCIPSVIAYNCILTCLGKKGRLGEALRT-FEEMKKDAAPNLSTYNVLI 414

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
              C+   +E A ++   M + G     +T N +I  LC   + DEA  +FE M  K   
Sbjct: 415 DMLCKAGEVEAAFKVRDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICS 474

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D +T+ +LI G  K+G++
Sbjct: 475 PDEVTFCSLIDGLGKQGRV 493



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/296 (26%), Positives = 143/296 (48%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD++S ++L   LV+A   +   +    +   G   + ++   +I   C+SG + +A
Sbjct: 577 GFIPDVMSYSILIHGLVKAGFARETYELFYAMKEQGCVLDTHAYNTFIDGFCKSGKVNKA 636

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +    ++K  G   ++ T+ S + G  KIDR D  + L+ +   +G          LI  
Sbjct: 637 YQLLEEMKTKGRQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGLELNVVIYSSLIDG 696

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G++ E Y ++ ++++ GL P    +N L+    + +           M      P+
Sbjct: 697 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEINEALVCFQNMKNLKGTPN 756

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +INGLC+ RK  +A+  + +++++G  P+T+ YTT+I GL K G + +A  ++ 
Sbjct: 757 HITYSILINGLCRVRKFNKAFVFWQEMQKQGLKPNTITYTTMIAGLAKAGNIAEASSLFE 816

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
                G +P+  +YN++I G        EA ++ +E   KG    T T   L+  L
Sbjct: 817 RFKANGGVPDSASYNAIIEGLSYSRRAMEAYKIFEETRMKGCNIHTKTCIALLDAL 872



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 176/373 (47%), Gaps = 20/373 (5%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA 125
           P+F+    L       Q+++++L++ F Q     Y  S  L +  V+     E R    A
Sbjct: 196 PAFSAYTTLIGALSSVQESDIMLTL-FHQMQELGYEVSVHLFT-TVIRVFAREGR-LDAA 252

Query: 126 MDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           +  LD    +     + LY   I C  ++G ++ A+  F ++K  G+     T+ S +  
Sbjct: 253 LSLLDEMKSNCLHADIVLYNVCIDCFGKAGKVDMAWKFFHEIKSHGLLPDDVTYTSMIGV 312

Query: 183 CIKIDRTDLVWKLYHDL-----IESGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
             K +R D   +++  +     +   Y    +I  + + GK  E Y LL +    G +P 
Sbjct: 313 LCKGNRLDEAVEIFEQMEQNRNVPCAYAYNTMIMGYGSAGKFDEAYSLLERQKARGCIPS 372

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
             A+N +++   +K   GR+ E L T   + ++ AP+  TY  +I+ LCK+ +   A++V
Sbjct: 373 VIAYNCILTCLGKK---GRLGEALRTFEEMKKDAAPNLSTYNVLIDMLCKAGEVEAAFKV 429

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            + +KE G  P+ +    +I  LCK   L +A  ++  M HK   P+E T+ S+I G  +
Sbjct: 430 RDAMKEAGLFPNVMTVNIMIDRLCKAKKLDEACSIFEGMNHKICSPDEVTFCSLIDGLGK 489

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +++A RL+++MLD       V Y +LI      GR ++ + +F+EM  +G   D+  
Sbjct: 490 QGRVDDAYRLYEQMLDSDKIPNAVVYTSLIKSFFKCGRKEDGHKIFKEMIHRGCSPDLRL 549

Query: 412 YNTLIQGYCKEGK 424
            N  +    K G+
Sbjct: 550 LNAYMDCVFKAGE 562


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/337 (28%), Positives = 159/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + + L ++  + R  + A   ++    TG S N  +    I  LC +G IEEA
Sbjct: 238 GISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEA 297

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F    ++++ G+     T+ + + G  K  R D    L  ++  +G          LI  
Sbjct: 298 FGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDG 357

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G   E +++++++   G+ P    ++ LI   C+    GR S +L  M       D
Sbjct: 358 FMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMAD 417

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  VI G  +   + EA+ + N++++ G  P+   Y+ +I+GLC++G    A  +  
Sbjct: 418 TMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLE 477

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +MI  GL PN + Y  +I GYCR  +   A    K+M  +        YN+LI GL   G
Sbjct: 478 QMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVG 537

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA   ++EM +KG   +  TY  LI GY   G +
Sbjct: 538 KMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNL 574



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 158/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ + +++ + L +    + A   L+   + G  PN       I   C  G    A
Sbjct: 448 GISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLA 507

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+    +   +  +NS ++G   + + D   + Y +++E G+         LI  
Sbjct: 508 CETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHG 567

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + +  +LL Q+L  GL P +  + +++  + +  N  +VS  L +M+ +   PD
Sbjct: 568 YSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPD 627

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  Y  VI+ L  S     A  V + +++ G VPD+++Y ++I G CK   +  A  +  
Sbjct: 628 NRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLD 687

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KG+ P    YN++I G+C+ D++  A+ +   ++ KG     VTY TLI G C  G
Sbjct: 688 EMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAG 747

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A  L+ EM  +G+  D   Y+ L  G    G +
Sbjct: 748 DIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDL 784



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/420 (25%), Positives = 185/420 (44%), Gaps = 40/420 (9%)

Query: 43  IAKQVCKI-TRTKPRWEQTLL-SDIPSFNFNDPLFFREFLKQQNNVL-----LSIRFFQW 95
           +A +V  + +R    W+Q +  SDIPS     P      L++ N+       L + FF W
Sbjct: 51  VAAEVATLLSRCTGDWKQVIAASDIPSRL--SPAALSSLLRRCNSSPRLHPKLLLDFFYW 108

Query: 96  LHSHYGFS---PDLVS--------------CNVLFDSLVEAR-----AFKVAMDFLDSTG 133
             +    S   PD  +               N L D ++ A              L  + 
Sbjct: 109 SRTRLAPSAPAPDAFAHLAVSLCAAGLYPQANGLLDQMIRAYPTPPLVLSSVHRALSGSD 168

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
               P  L++ +    ++G + +       +K++G+  S++  N  L   ++ D  DL+W
Sbjct: 169 QGRRPVVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLW 228

Query: 194 K---------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           K         +  D+     LI+A+C    +    +++ ++ E G       +N LI   
Sbjct: 229 KVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGL 288

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C              M      PD FTY  +INGLCK  +  +A  + +++   G +P+ 
Sbjct: 289 CRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNV 348

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V+Y+T+I G  + G   +A K+  EM   G+ PN+ TY+++I G C++  +  A R+ K+
Sbjct: 349 VVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQ 408

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M   GY   T+TYN +I G       +EA+ L  EM + GI  +V TY+ +I G C+ G+
Sbjct: 409 MTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGE 468



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 153/336 (45%), Gaps = 13/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            +PDL   N L   L        A+++ D     GF PN  +    I     +G +E+A 
Sbjct: 519 LTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAE 578

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAF 209
               ++   G+  +   +   L G  K D  + V      ++E G +         I   
Sbjct: 579 QLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNL 638

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            + G +     +L  + ++GLVP++  +  LIS FC+  +  +   LL  M  +   P  
Sbjct: 639 SSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGI 698

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
             Y  +I+G CKS     A  +FN +  +G  P+ V YTT+I G CK G + DA  ++ E
Sbjct: 699 SCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNE 758

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ +G+ P+ + Y+ +  G     +L++A  + +EM+ +GY   + ++NTL+ G C  G+
Sbjct: 759 MLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAIIS-SFNTLVHGFCKRGK 817

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             E       M  K I   ++T   ++ G  + GK+
Sbjct: 818 LQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKL 853



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/334 (24%), Positives = 155/334 (46%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G S ++V+ N L   L  A A + A  +   ++  G  P+  +    I  LC+ G  ++A
Sbjct: 273 GCSLNVVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQA 332

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
            C   ++   G+  ++  +++ + G ++    D  +K+  ++  +G          LI+ 
Sbjct: 333 KCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRG 392

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++     +L+Q+ + G + +   +N +I     + N      LL+ M     +P+
Sbjct: 393 LCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPN 452

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +INGLC+  +   A  +   +   G  P+  +Y  +I G C+ G    A +   
Sbjct: 453 VYTYSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLK 512

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  + L P+ Y YNS+I G   +  ++EA   + EML+KG+     TY  LI G  + G
Sbjct: 513 KMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAG 572

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             ++A  L  +M   G+  +   Y  +++GY K 
Sbjct: 573 NLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKS 606



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/338 (23%), Positives = 143/338 (42%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  PD  +   + + L +       K  +D +   G  PN       I      G  +E
Sbjct: 307 YGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQGNADE 366

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           AF    ++   GV  +  T+++ + G  K+ R     ++   + + GY+         I+
Sbjct: 367 AFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIE 426

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                    E + LL ++ + G+ P    ++ +I+  C+     R S LL  M+A    P
Sbjct: 427 GHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASGLLEQMIADGLKP 486

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + F Y  +I+G C+      A      +      PD   Y ++I GL  +G + +A + +
Sbjct: 487 NAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYY 546

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ KG  PN++TY  +IHGY    NLE+A++L  +ML+ G       Y  ++ G    
Sbjct: 547 DEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKS 606

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              ++     + M +KG+  D   Y  +I      G +
Sbjct: 607 DNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHM 644



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/301 (20%), Positives = 129/301 (42%), Gaps = 34/301 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD     ++  +L  +   + A+  L   +  G  P+       I   C++  +E+A
Sbjct: 623 GLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKA 682

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++ + G+   I  +N+ + G  K D       +++ +I  G          LI  
Sbjct: 683 VGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDG 742

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G + +  +L  ++L +G+ P+   ++ L +      +  +   +   M+AR  A  
Sbjct: 743 YCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAII 802

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + ++  +++G CK  K  E  +  + + ++  VP  +    ++ GL + G L +A  ++ 
Sbjct: 803 S-SFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFV 861

Query: 329 E--------------------MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           E                    MI++GL+P +  +N MI  +C+   L++A  LH  ++ K
Sbjct: 862 ELQQKNASHRDTDHLSSLFTDMINQGLVPLDVIHN-MIQSHCKQGYLDKALMLHDALVAK 920

Query: 369 G 369
           G
Sbjct: 921 G 921



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 75/195 (38%), Gaps = 17/195 (8%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            P   AF  L    C    + + + LL  M+     P       V   L  S        
Sbjct: 117 APAPDAFAHLAVSLCAAGLYPQANGLLDQMIRAYPTPP-LVLSSVHRALSGS-------- 167

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
                 ++G  P  V+   ++    K G + D  ++   M   GL P+    N ++    
Sbjct: 168 ------DQGRRP--VVLDVLVDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLL 219

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R D L+   ++   M   G      TY+TLI   C     + A  + EEM + G   +V+
Sbjct: 220 RADALDLLWKVRGFMEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVV 279

Query: 411 TYNTLIQGYCKEGKI 425
           TYNTLI G C+ G I
Sbjct: 280 TYNTLIGGLCRAGAI 294


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  154 bits (389), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 107/375 (28%), Positives = 177/375 (47%), Gaps = 28/375 (7%)

Query: 67  SFNFND---PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
           SF +N     L  R F+++       +   Q    + G  P LV+ N +   L+++   +
Sbjct: 314 SFTYNPLITALLERGFVQK-------VEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVE 366

Query: 124 VA-MDF--LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
            A + F  + + G  P+  +    +   C++G ++EA      L+  G+  ++ T+N+ +
Sbjct: 367 AAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLI 426

Query: 181 LGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  ++   +   +L  +++E G          L+        +    E   ++L  GL 
Sbjct: 427 DGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQ 486

Query: 232 PENTAFNKLISRFCEKKNFG---RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           P+  A+N   +R C +   G   +  +L   M+ +   PD  TY  +I+GLCK+    +A
Sbjct: 487 PDCFAYN---TRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDA 543

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +   +   G  PD + YT +IH  C+ G L +ARK+   M+  GL P+  TY  +IH 
Sbjct: 544 KDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHT 603

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            CR  NL  A    ++MLD G     +TYN LI  LC  GRT  AYH F EM ++G+  +
Sbjct: 604 CCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPN 663

Query: 409 VITYNTLIQGYCKEG 423
             TY  LI G C+EG
Sbjct: 664 KYTYTLLIDGNCREG 678



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 155/331 (46%), Gaps = 16/331 (4%)

Query: 110 NVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           N L  +L+E R F   ++ L    ++ G  P   +    I  L +S  +E A   F++++
Sbjct: 318 NPLITALLE-RGFVQKVEALQMEMENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMR 376

Query: 166 EMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            MG+   + T+NS L G C   +  + +W L  DL  +G          LI  +C  G +
Sbjct: 377 AMGLLPDLITYNSMLNGYCKAGNLKEALW-LLGDLRRAGLAPTVLTYNTLIDGYCRLGGL 435

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E   L  +++E G  P+   +  L++   + +N     E    M+++   PD F Y   
Sbjct: 436 EEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTR 495

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I          +A+++   +  +G  PDTV Y  +I GLCK G L DA+ +  +M+  GL
Sbjct: 496 ICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGL 555

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P+  TY  +IH +C    L EA++L   M+  G   + VTY  LI   C  G    AY 
Sbjct: 556 QPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYG 615

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            F +M   GI  + ITYN LI   C+ G+ +
Sbjct: 616 WFRKMLDVGIEPNEITYNVLIHALCRTGRTL 646



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 147/333 (44%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL++ N + +   +A   K A+  L      G +P   +    I   C  G +EEA
Sbjct: 379 GLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEA 438

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND----- 212
                ++ E G F  + T+   + G  K+    +  + + +++  G     F  +     
Sbjct: 439 RRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICA 498

Query: 213 ----GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G   + ++L   ++  G+ P+   +N +I   C+  N     +L   MV+    PD
Sbjct: 499 ELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPD 558

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  C+     EA ++ N +   G  P  V YT +IH  C+ G L  A   + 
Sbjct: 559 CITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFR 618

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G+ PNE TYN +IH  CR      A     EML++G      TY  LI G C  G
Sbjct: 619 KMLDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREG 678

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +A  L+ EM Q GI  D  T+N L +G+ K
Sbjct: 679 NWADAIRLYFEMHQNGIPPDYCTHNALFKGFDK 711



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/333 (27%), Positives = 143/333 (42%), Gaps = 17/333 (5%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLEL--YIQCLCESGLIEEAFCAFSKL 164
           V+ NV+   L      + A   +DS   S   +S      I  L E G +++      ++
Sbjct: 281 VTYNVVISFLAREGHLENAAKLVDSMRLSKKASSFTYNPLITALLERGFVQKVEALQMEM 340

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGYLIQAFCNDGKV 215
           +  G+  ++ T+N+ + G +K ++ +             L  DLI    ++  +C  G +
Sbjct: 341 ENEGIMPTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNL 400

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E   LL  +   GL P    +N LI  +C          L   MV +   PD  TY  +
Sbjct: 401 KEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTIL 460

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF---EMIH 332
           +NG  K R    A   F+++  +G  PD   Y T I   C    LGD  K +     M+ 
Sbjct: 461 MNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRI---CAELILGDTHKAFQLREVMML 517

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KG+ P+  TYN +I G C+  NL++AK L  +M+  G     +TY  LI   C  G   E
Sbjct: 518 KGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSE 577

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A  L   M   G+   V+TY  LI   C+ G +
Sbjct: 578 ARKLLNGMVSDGLQPSVVTYTILIHTCCRRGNL 610



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 10/142 (7%)

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
           L A+RV   +   G  PD      V+  L       D R ++ EM+   + P   TYN++
Sbjct: 193 LAAFRV---VACHGVAPDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTL 249

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIAGLCLHGRTDEAYHLFEEM--A 401
           +  + +    +EA  L KEM  +G G     VTYN +I+ L   G  + A  L + M  +
Sbjct: 250 LDSFLKEGRKDEASMLLKEMETQGGGCLLNDVTYNVVISFLAREGHLENAAKLVDSMRLS 309

Query: 402 QKGIFRDVITYNTLIQGYCKEG 423
           +K       TYN LI    + G
Sbjct: 310 KKA---SSFTYNPLITALLERG 328



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG---IFRDVITY 412
           ++ + +++EML      T VTYNTL+      GR DEA  L +EM  +G   +  DV TY
Sbjct: 225 DDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASMLLKEMETQGGGCLLNDV-TY 283

Query: 413 NTLIQGYCKEGKIVN 427
           N +I    +EG + N
Sbjct: 284 NVVISFLAREGHLEN 298


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 164/329 (49%), Gaps = 20/329 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F +J+E +  +++ D    +G           I    ESG + +A   +   KE 
Sbjct: 47  SASAVFAAJLETKGTQIS-DIYVFSGL----------ITAYLESGFLRDAIECYRLTKEH 95

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
                  T    +   +K+    LVW  Y + +E GY         L+ +F  +G++   
Sbjct: 96  KFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLA 155

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +   + + GL P   +FN L++ + +  +      L + M A    PD +TY  +ING
Sbjct: 156 QSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLING 215

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A  +F+++ + G VP+ V +TT+I G CK G +  A +++ +M+ + L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPD 275

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+  +L++A+ L  EM  KG     +TY TLI G C  G  + A+   +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRK 335

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 336 RMIKENIRLDXVAYTALISGLCQEGRSVD 364



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  +   Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 33/381 (8%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGF 134
           E L+    +   +R F WL    G+   + + N   D+L +A A ++A +    +   G+
Sbjct: 10  EVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGY 69

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            P+  +  + ++ LC++G +++A     +L+E GV  ++ T++  + GC K  R D   +
Sbjct: 70  PPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALE 129

Query: 195 LYH----------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++           D++    L++  C+  ++SE + L   + + G  P   +++ L+   
Sbjct: 130 IFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGL 189

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+         L   MV ++  PD   Y   + GLCK+ +  EA      +  +G   D 
Sbjct: 190 CKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADA 249

Query: 305 VMYTTVI-------HG----------LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           V ++TVI       H           LC+ G L +A K + EMI +   P+   +N++IH
Sbjct: 250 VAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIH 309

Query: 348 GYCRIDNLEEAKRLHKEM--LDKGYGETTV-TYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
             C+   L +   L + M  + + Y    + TYN ++  LC   + DEA  L  EMA  G
Sbjct: 310 AVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYG 369

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  DV+TY+ L+ G CK GK+
Sbjct: 370 LSPDVVTYSALVDGLCKLGKL 390



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 20/305 (6%)

Query: 137 NPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVF---GSIKTWNSALLGCIKIDRTD 190
           +P S EL+   I  +C+S  + +    F ++K M  F    +++T+N  +    K  + D
Sbjct: 297 HPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLD 356

Query: 191 LVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L +         D++    L+   C  GK+    +LL ++ ++G+ P++     ++
Sbjct: 357 EAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASIL 416

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           +   +          L TM AR   PD  TY  +++GLCK+ +  EA      +      
Sbjct: 417 NALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCT 476

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE-AKR 360
           PD   YT +I  LC+ G    A  ++ EM+ +G+LP+   Y+S++ G  R + LE+ A  
Sbjct: 477 PDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLAR-NGLEDLALE 535

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L K  L K      V +  ++ GLC  G+ ++A  + E MA  G   D  TY  +++G  
Sbjct: 536 LLKTSLCK---PDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLR 592

Query: 421 KEGKI 425
           K GK+
Sbjct: 593 KLGKV 597



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 17/322 (5%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           S  +A AF   +  L   G +    +    I+ LC SG+++EA   F ++       S +
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQ--MIEHLCRSGMLDEACKTFEEMISRNHPPSAE 302

Query: 175 TWNSALLGCIKIDRTDLVWKLYH------------DLIESGYLIQAFCNDGKVSEGYELL 222
            +N+ +    K  R      L+             +L     ++   C   ++ E  EL+
Sbjct: 303 LFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++   GL P+   ++ L+   C+     R  +LL  M      PD+FT   ++N L K+
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            K   A      +K RG  PD V Y T++ GLCK G + +A     +M+     P+ ++Y
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             +I   CR      A  + +EM+ +G    TV Y++L+ GL  +G  D A  L +    
Sbjct: 483 TIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLC 542

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
           K    D + +  ++ G CK GK
Sbjct: 543 K---PDFVMHKMVVDGLCKAGK 561



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 137/319 (42%), Gaps = 36/319 (11%)

Query: 90  IRFFQWLHSHYGF--SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELY 144
           +  FQ + S   F   P+L + N++ D+L +A+    A + ++     G SP+  +    
Sbjct: 321 VLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           +  LC+ G ++ A     ++ + GVF                           D      
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVF--------------------------PDSFTDAS 414

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ A    GKV      L  +   G  P+   +N L+   C+          L  MVA  
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F+Y  +I  LC+S +   A+ +F ++ +RG +PDTV+Y +++ GL + G      
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL----E 530

Query: 325 KMWFEMIHKGLLPNEYTYNSMI-HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +  E++   L   ++  + M+  G C+    E+A  + + M D G+     TY  ++ G
Sbjct: 531 DLALELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRG 590

Query: 384 LCLHGRTDEAYHLFEEMAQ 402
           L   G+ D+A  L ++ ++
Sbjct: 591 LRKLGKVDKARQLVDDASE 609


>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
          Length = 350

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 30/290 (10%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           ++ I+C C  G ++ AF AF      G                        W++ + ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTG------------------------WRVQNVVLN 68

Query: 202 SGYLIQAFCNDGKVSEGYELL-RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
              LI+  C+  +  +  +++ R++ E G  P+  ++N LI   C +K      ELL  M
Sbjct: 69  Q--LIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHM 126

Query: 261 VAR---NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            A    N +PD  +Y  VI+GL K  +  +AY +F+++  +G+ PD V Y++VI GLCK 
Sbjct: 127 TANGGYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKA 186

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A     +M++KG++PN   YNS+IHGYC +  L EA RL K+M   G     VTY
Sbjct: 187 QAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTY 246

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           N LI   C  GR  EA  +F+ M ++G   +  TY +L+ GY  +G +V+
Sbjct: 247 NMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVD 296



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 73/180 (40%), Gaps = 12/180 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PDLV+ + + D L +A+A   A   L      G  PN       I   C  G + EA
Sbjct: 168 GFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEA 227

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+   G+  ++ T+N  +    KI R      ++  ++  G          L+  
Sbjct: 228 VRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHG 287

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + + ++LL  ++ DG+  E+  FN LI  + + +   +   +   M      P+
Sbjct: 288 YATKGALVDMHDLLDLMIRDGIPIEHRVFNILIYAYAKHETVDKAMAVFAEMRQNGLRPN 347


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 33/381 (8%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGF 134
           E L+    +   +R F WL    G+   + + N   D+L +A A ++A +    +   G+
Sbjct: 10  EVLRHLGKISTIVRLFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGY 69

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            P+  +  + ++ LC++G +++A     +L+E GV  ++ T++  + GC K  R D   +
Sbjct: 70  PPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALE 129

Query: 195 LYH----------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++           D++    L++  C+  ++SE + L   + + G  P   +++ L+   
Sbjct: 130 IFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGL 189

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+         L   MV ++  PD   Y   + GLCK+ +  EA      +  +G   D 
Sbjct: 190 CKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADA 249

Query: 305 VMYTTVI-------HG----------LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           V ++TVI       H           LC+ G L +A K + EMI +   P+   +N++IH
Sbjct: 250 VAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIH 309

Query: 348 GYCRIDNLEEAKRLHKEM--LDKGYGETTV-TYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
             C+   L +   L + M  + + Y    + TYN ++  LC   + DEA  L  EMA  G
Sbjct: 310 AVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYG 369

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  DV+TY+ L+ G CK GK+
Sbjct: 370 LSPDVVTYSALVDGLCKLGKL 390



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 144/305 (47%), Gaps = 20/305 (6%)

Query: 137 NPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVF---GSIKTWNSALLGCIKIDRTD 190
           +P S EL+   I  +C+S  + +    F ++K M  F    +++T+N  +    K  + D
Sbjct: 297 HPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLD 356

Query: 191 LVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L +         D++    L+   C  GK+    +LL ++ ++G+ P++     ++
Sbjct: 357 EAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASIL 416

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           +   +          L TM AR   PD  TY  +++GLCK+ +  EA      +      
Sbjct: 417 NALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCT 476

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE-AKR 360
           PD   YT +I  LC+ G    A  ++ EM+ +G+LP+   Y+S++ G  R + LE+ A  
Sbjct: 477 PDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLAR-NGLEDLALE 535

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L K  L K      V +  ++ GLC  G+ ++A  + E MA  G   D  TY +++ G  
Sbjct: 536 LLKTSLCK---PDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLR 592

Query: 421 KEGKI 425
           K GK+
Sbjct: 593 KLGKV 597



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 17/322 (5%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           S  +A AF   +  L   G +    +    I+ LC SG+++EA   F ++       S +
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQ--MIEHLCRSGMLDEACKTFEEMISRNHPPSAE 302

Query: 175 TWNSALLGCIKIDRTDLVWKLYH------------DLIESGYLIQAFCNDGKVSEGYELL 222
            +N+ +    K  R      L+             +L     ++   C   ++ E  EL+
Sbjct: 303 LFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELV 362

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++   GL P+   ++ L+   C+     R  +LL  M      PD+FT   ++N L K+
Sbjct: 363 NEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKA 422

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            K   A      +K RG  PD V Y T++ GLCK G + +A     +M+     P+ ++Y
Sbjct: 423 GKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             +I   CR      A  + +EM+ +G    TV Y++L+ GL  +G  D A  L +    
Sbjct: 483 TIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLC 542

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
           K    D + +  ++ G CK GK
Sbjct: 543 K---PDFVMHKMVLDGLCKAGK 561



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/319 (23%), Positives = 139/319 (43%), Gaps = 36/319 (11%)

Query: 90  IRFFQWLHSHYGF--SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELY 144
           +  FQ + S   F   P+L + N++ D+L +A+    A + ++     G SP+  +    
Sbjct: 321 VLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSAL 380

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           +  LC+ G ++ A     ++ + GVF                           D      
Sbjct: 381 VDGLCKLGKLDRACDLLEEMSKEGVF--------------------------PDSFTDAS 414

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ A    GKV      L  +   G  P+   +N L+   C+          L  MVA  
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F+Y  +I  LC+S +   A+ +F ++ +RG +PDTV+Y +++ GL + G      
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGL----E 530

Query: 325 KMWFEMIHKGLLPNEYTYNSMI-HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +  E++   L   ++  + M+  G C+    E+A  + + M D G+     TY ++++G
Sbjct: 531 DLALELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSG 590

Query: 384 LCLHGRTDEAYHLFEEMAQ 402
           L   G+ D+A  L ++ ++
Sbjct: 591 LRKLGKVDKARQLVDDASE 609


>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 737

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 159/344 (46%), Gaps = 25/344 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L+ CN     LV A   + A+ FL+     G +PN  +    I+  C+   +E A
Sbjct: 201 GVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQVEHA 260

Query: 158 F----------CAFSKLKEMGVFG------SIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
                      C   K+    V G       IK   + +   +K +      KL+ D + 
Sbjct: 261 MELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDN------KLFPDQVT 314

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L+      G   E  E LR+  E G   +   ++ +++ FC +    R  E+++ M+
Sbjct: 315 YNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMI 374

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            +  +PD  TY  V+NGLCK  K  EA ++   + + G  P+TV YT +++GLC+ G   
Sbjct: 375 TKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSL 434

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +AR+M          PN  TY+ ++HG  R   L EA  + +EML KG+  T V  N LI
Sbjct: 435 EAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLI 494

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             LCL  + +EA    EE   +G   + + + T+I G+C+   I
Sbjct: 495 KSLCLEQKMNEAKKFMEECLNRGCAVNAVNFTTVIHGFCQSDNI 538



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 85/359 (23%), Positives = 160/359 (44%), Gaps = 14/359 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---P 136
           L   N +  ++RF + +    G +P++V+ N L     +    + AM+ +    F    P
Sbjct: 216 LVMANKLEKALRFLERMQL-VGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPP 274

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           +  S    +  LC+   I+E      K+ K+  +F    T+N+ +    K    D   + 
Sbjct: 275 DKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEF 334

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             +  E G+         ++ +FC  G++    E++ +++  G  P+   +  +++  C+
Sbjct: 335 LRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCK 394

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   ++L  M      P+  +Y  ++NGLC+    LEA  + N  +E  + P+ + 
Sbjct: 395 VGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDWWTPNAIT 454

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+ V+HGL + G L +A  +  EM+ KG  P     N +I   C    + EAK+  +E L
Sbjct: 455 YSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECL 514

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++G     V + T+I G C     D A  L ++M       D +T+  +I    K+G+I
Sbjct: 515 NRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRI 573



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 148/336 (44%), Gaps = 16/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D V  + + +S         A + ++   + G SP+  +    +  LC+ G +EEA
Sbjct: 342 GFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGKVEEA 401

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK----------IDRTDLVWKLYHDLIESGYLIQ 207
                ++ + G   +  ++ + L G  +          ++ ++  W    + I    ++ 
Sbjct: 402 KKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMNTSEEDW-WTPNAITYSVVMH 460

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               +GK+SE  +++R++L  G  P     N LI   C ++      + +   + R  A 
Sbjct: 461 GLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAKKFMEECLNRGCAV 520

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  VI+G C+S     A  + +D+      PD V +T +I  L K G + +A    
Sbjct: 521 NAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDALGKKGRIEEATVYT 580

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ KGL P   TY ++IH YC++  +EE  +L  +ML +    T   YN +I  LC  
Sbjct: 581 MKMLKKGLDPTPVTYRAVIHQYCKMGRVEELIKLLGKMLSRSKCRT--AYNQVIEKLCNF 638

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G  + A  +   + +     D  T + L++ Y  +G
Sbjct: 639 GNPEAADKVVGLVLRTASRIDANTCHMLMESYLSKG 674



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 36/269 (13%)

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           W+  HD I    ++Q             +LR ++  G+     AF  ++  +        
Sbjct: 130 WRYRHDPIVYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRN 189

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             ++L  M      P+       I+ L  + K  +A R    ++  G  P+ V Y  +I 
Sbjct: 190 AMQVLTMMQKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIK 249

Query: 313 GLCKMGWLGDARKMWFEMIHKG------------------------------------LL 336
           G C +  +  A ++  EM  KG                                    L 
Sbjct: 250 GYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLF 309

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P++ TYN+++H   +  + +EA    +E  ++G+    V Y+ ++   C+ GR D A  +
Sbjct: 310 PDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEI 369

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EM  KG   DV+TY  ++ G CK GK+
Sbjct: 370 VNEMITKGCSPDVVTYTAVVNGLCKVGKV 398



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 57/283 (20%), Positives = 106/283 (37%), Gaps = 55/283 (19%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           ++P+ ++ +V+   L        A D +    + GF P P  + L I+ LC    + EA 
Sbjct: 448 WTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFPTPVEINLLIKSLCLEQKMNEAK 507

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
               +    G   +   + + + G  + D  D    L  D+         +    +I A 
Sbjct: 508 KFMEECLNRGCAVNAVNFTTVIHGFCQSDNIDTALSLLDDMYLNNKHPDAVTFTAIIDAL 567

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL---LHTMVARNRA 266
              G++ E      ++L+ GL P    +  +I ++C+    GRV EL   L  M++R++ 
Sbjct: 568 GKKGRIEEATVYTMKMLKKGLDPTPVTYRAVIHQYCK---MGRVEELIKLLGKMLSRSKC 624

Query: 267 PDNFTYEEVINGLC----------------KSRKR-------------------LEAYRV 291
                Y +VI  LC                ++  R                   L AY+V
Sbjct: 625 --RTAYNQVIEKLCNFGNPEAADKVVGLVLRTASRIDANTCHMLMESYLSKGIPLSAYKV 682

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
              + +R  +PD  +   +   L   G L +A  +  + + +G
Sbjct: 683 ACRMFDRNLIPDLKLCEKLSKKLVLEGKLEEADNLMLQFVQRG 725


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 153/328 (46%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V  N L D    A   + A+     +D    SPN  +    I  LC+SG +E A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FS++ E G+  ++ T+ +                          LIQ  CN+G +  
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTA--------------------------LIQGQCNEGHLQC 300

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            + LL  +  +GLVP +  F+ LI   C+++        L ++V +    +   Y  +I+
Sbjct: 301 AFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLID 360

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK+ K   A  +   +   G+VPD   Y+++I GLC+   L  A  M  +M+ KG+  
Sbjct: 361 GLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQA 420

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  +I    R    E  K++  +M+  G     VTY   +   C  GR ++A  + 
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMI 480

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +M  +G+F +++TYNTLI+GY   G +
Sbjct: 481 VQMVDRGVFPNLVTYNTLIRGYANLGLV 508



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 138/295 (46%), Gaps = 26/295 (8%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S GF PN       I   C +G +E A   F  +       +++T+              
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTE------------ 252

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                         LI   C  GKV     L  +++E GL P    +  LI   C + + 
Sbjct: 253 --------------LIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                LLH M      P+++T+  +I+ LCK  K  EA      L ++G   + V+YT++
Sbjct: 299 QCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSL 358

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I GLCK G +  A ++  +MI +G +P+ ++Y+S+I G CR   L +A  + ++M++KG 
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + VTY  +I  L     ++    +F++M   GI  D++TY   ++ YC+EG++
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRM 473



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 106/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI A+C  G +    + L  +L  GL P++ A+   +  +C          +   M  R 
Sbjct: 78  LINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRG 137

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                FTY  +++GL  +    EA  VF  ++     PDT +Y T++HGLC+ G   +A 
Sbjct: 138 CLRTAFTYTALLHGLLGAGMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  E +  G  PN   YN++I GYC    +E A ++ + M          TY  LI GL
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGL 257

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G+ + A  LF  M + G+  +V+TY  LIQG C EG +
Sbjct: 258 CKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 136/331 (41%), Gaps = 10/331 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           P L   N L  +L   R F   M+ L S   + N  +    I   C +G I  A    + 
Sbjct: 39  PPLRCLNTLLMALARHRMFP-DMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTS 97

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC---------NDGK 214
           L   G+      + S +LG  +        +++  +   G L  AF            G 
Sbjct: 98  LLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGM 157

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V E   +   +  D   P+   +  ++   CE         LL   ++    P+   Y  
Sbjct: 158 VREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNA 217

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G C + +   A +VF  +      P+   YT +IHGLCK G +  A  ++  M+  G
Sbjct: 218 LIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG 277

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L PN  TY ++I G C   +L+ A RL   M   G      T++ LI  LC   + +EA 
Sbjct: 278 LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQ 337

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                + +KG+  + + Y +LI G CK GKI
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKI 368



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/342 (22%), Positives = 147/342 (42%), Gaps = 30/342 (8%)

Query: 112 LFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           L D L +      A   M  + S GF P+ +S    I  LC    + +A      + E G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGY 219
           +  S  T+   +   ++   ++   K++  +I +G           ++++C +G++ +  
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT---MVARNRAPDNFTYEEVI 276
            ++ Q+++ G+ P    +N LI  +    N G VS+   T   MV +   P+  +Y  ++
Sbjct: 478 SMIVQMVDRGVFPNLVTYNTLIRGY---ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534

Query: 277 NGLCK---SRKRLEAYRV---------FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             + K   S   ++ +++           D+ ER       +Y+  I  LC++  L +A+
Sbjct: 535 RLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAK 594

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             +  M +  L P+E  Y S+I   CR+  L +A  L   M   GY     +Y  +I+ L
Sbjct: 595 HFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSL 654

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  G    A  +F ++  K    D I +  LI G  ++G + 
Sbjct: 655 CEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVA 696



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 130/333 (39%), Gaps = 42/333 (12%)

Query: 101 GFSPDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G     V+  ++ D LV    +   K   D + +TG +P+  +  ++++  CE G +E+A
Sbjct: 417 GIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDA 476

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++ + GVF ++ T+N+                          LI+ + N G VS+
Sbjct: 477 ESMIVQMVDRGVFPNLVTYNT--------------------------LIRGYANLGLVSQ 510

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKK------------NFGRVSELLHTMVARNR 265
            +     ++  G  P   ++  L+    +K             +   +  LL  +  R  
Sbjct: 511 AFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQL 570

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
                 Y   I  LC+  +  EA   F  ++     P   +YT++I   C++  L DA  
Sbjct: 571 PLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALT 630

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M   G LP+  +Y  +I   C   N   AK +  ++L K      + +  LI GL 
Sbjct: 631 LLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLL 690

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             G   E   L   M + G ++   T N +I G
Sbjct: 691 QKGSVAEFSSLLSVMKEHG-YQPSNTINAMITG 722


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/330 (29%), Positives = 165/330 (50%), Gaps = 16/330 (4%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N +  SLV+++ +   +     ++  G +PN  +  + I C C+ GLI  AF   +K+ +
Sbjct: 72  NKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILK 131

Query: 167 MGVFGSIKTWNSALLG-CIKID-------RTDLVWKLYH-DLIESGYLIQAFCNDGKVSE 217
           MG    I T N+ + G C+K            LV   +H D +  G LI   C  G+   
Sbjct: 132 MGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRA 191

Query: 218 GYELLRQVLEDG-LVPENTA-FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
             +LLR+V  DG LV  N   +N +I    + K+     +L   MVA+  +PD  TY  +
Sbjct: 192 ALQLLRRV--DGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSAL 249

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I G     K  +A  +FN +      PD   +  ++ G CK G L  A+ +   M+ + +
Sbjct: 250 IRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDI 309

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN  T+N+++ G+C+   ++E K +   M+ +G     VTY +L+ G CL  + ++A  
Sbjct: 310 KPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKK 369

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +F  M+Q+G+  +V +YN +I G+CK  K+
Sbjct: 370 IFNTMSQRGVTANVHSYNIMINGFCKIKKV 399



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 169/360 (46%), Gaps = 35/360 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+++ N              A++F D   + GF  +  S    I  LC+ G    A
Sbjct: 133 GYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFHLDQVSYGTLINGLCKVGETRAA 192

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++    V  +   +N+ + G  K    +  + LY          D++    LI+ 
Sbjct: 193 LQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRG 252

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   GK+ +  +L  +++ + + P+   FN L+  FC++    +   +L  M+ ++  P+
Sbjct: 253 FFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPN 312

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +++G CK RK  E   VF  + ++G  P+ V Y +++ G C +  +  A+K++ 
Sbjct: 313 VSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFN 372

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  +G+  N ++YN MI+G+C+I  +++A +L  EM  K      VTYN+LI GLC  G
Sbjct: 373 TMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSG 432

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNT-----------------------LIQGYCKEGKI 425
           +   A+ L  EM  +G   ++ITYN+                       LI+G C+ GK+
Sbjct: 433 KISYAFQLVNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKL 492



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 124/292 (42%), Gaps = 52/292 (17%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+ + L          K A+D  +        P+  +  + +   C+ G +++A  
Sbjct: 240 SPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGRLKKAKN 299

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
               +    +  ++ T+N+                          L+  FC D K+ EG 
Sbjct: 300 VLDMMMIQDIKPNVSTFNT--------------------------LVDGFCKDRKMKEGK 333

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            +   +++ G+ P    +  L+  +C  K   +  ++ +TM  R    +  +Y  +ING 
Sbjct: 334 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGF 393

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK +K  +A ++F ++  +  +PD V Y ++I GLCK G +  A ++  EM  +G  PN 
Sbjct: 394 CKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNI 453

Query: 340 YTYNS-----------------------MIHGYCRIDNLEEAKRLHKEMLDK 368
            TYNS                       +I G C+   LE A+++ +++L K
Sbjct: 454 ITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLLVK 505



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 8/216 (3%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAF--NKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           DG VS    LL Q       P  TAF  NK++    + K++  V  L   M      P+ 
Sbjct: 50  DGAVSLFNSLLHQN------PTLTAFEFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNF 103

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            T+  +IN  C+      A+ V   + + GY PD +   T I G C  G +  A     +
Sbjct: 104 VTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDK 163

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++  G   ++ +Y ++I+G C++     A +L + +  K      V YNT+I G+     
Sbjct: 164 LVALGFHLDQVSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKH 223

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++A+ L+ EM  K I  DV+TY+ LI+G+   GK+
Sbjct: 224 VNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKL 259


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 168/341 (49%), Gaps = 16/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DST--GFSPNPNSLELYIQCLCESGL 153
           G +P+  S N+L   L +    + A+  L     D T  G  P+  S    I  L   G 
Sbjct: 162 GCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQ 221

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGY 204
           +++A+C F ++ + G+  +  T+N  L G          I I R      +  D++    
Sbjct: 222 LDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTYNT 281

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C +G+  E  ++   +++ G  P+++ +  L+  +  +    ++ +LL  MV   
Sbjct: 282 LMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNG 341

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD++ +  +I    K     EA   F+ ++++G  P+ V Y TV+  LC++G + DA 
Sbjct: 342 TQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAM 401

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             +  +I +GL PN   + ++IHG C  D  ++A+ L  EM+ +G    T+ +NTL+  L
Sbjct: 402 SQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHL 461

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G    A ++F+ M +  +  DVITY TLI GYC +GK+
Sbjct: 462 CKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKV 502



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 138/296 (46%), Gaps = 26/296 (8%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D +   G  P+     + I    + G+++EA  AFSK+++ G+  +I T+         
Sbjct: 334 LDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTY--------- 384

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
                            G ++ A C  GKV +      +++ +GL P    F  LI   C
Sbjct: 385 -----------------GTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLC 427

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
               + +  EL   M+ R   P+   +  ++N LCK      A  +F+ +       D +
Sbjct: 428 ACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVI 487

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            YTT+I G C  G + +A K+   M+  G+ PNE TYN++I+GYC+   +E+A  L ++M
Sbjct: 488 TYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQM 547

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             KG     V Y+T++ GL    R   A  L+  M + GI   + TYN ++QG C+
Sbjct: 548 ASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQ 603



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 170/374 (45%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+VS   + + L+      +A+ +  + LD  G SPN  +    +   C SG  +E
Sbjct: 201 GCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQ-GMSPNCITYNCLLHGYCSSGKPKE 259

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F K+   GV   + T+N+ ++   K  R+    K++  +++ G+         L+ 
Sbjct: 260 AIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLH 319

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +  +G + + ++LL  ++ +G  P++  FN LI  + +             M  +   P
Sbjct: 320 GYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHP 379

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  V++ LC+  K  +A   F+ L   G  P+ V++ T+IHGLC       A ++ 
Sbjct: 380 NIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELA 439

Query: 328 FEMIHKGLLPNEY-----------------------------------TYNSMIHGYCRI 352
            EMI +G+ PN                                     TY ++I GYC  
Sbjct: 440 VEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLD 499

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             ++EA +L + M+  G     VTYNT+I G C +GR ++A  LF +MA KG+   ++ Y
Sbjct: 500 GKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIY 559

Query: 413 NTLIQGYCKEGKIV 426
           +T++ G  +  +I 
Sbjct: 560 STILHGLFQTRRIA 573



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 5/234 (2%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL- 256
           DL     +I      G +   +  L +V+  G   +   F+ L+   C  K      ++ 
Sbjct: 95  DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLKGLCHDKRTSDAMDIA 154

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN----DLKERGYVPDTVMYTTVIH 312
           L  M A    P+ F+Y  ++ GLC   +  +A  + +    D    G  PD V YTTVI+
Sbjct: 155 LRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVIN 214

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL + G L  A  ++ EM+ +G+ PN  TYN ++HGYC     +EA  + ++M   G   
Sbjct: 215 GLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEP 274

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VTYNTL+  LC +GR+ EA  +F+ M +KG   D   Y TL+ GY  EG +V
Sbjct: 275 DVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLV 328



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/289 (21%), Positives = 113/289 (39%), Gaps = 47/289 (16%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+   + D+L        AM   D L S G +PN       I  LC     ++A
Sbjct: 376 GLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKA 435

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWKLYH------DLIESGYLIQA 208
                ++   G+  +   +N+ L    K   + R   ++ L        D+I    LI  
Sbjct: 436 EELAVEMIGRGICPNTIFFNTLLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDG 495

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C DGKV E  +LL  ++ DG+ P    +N +I+ +C+         L   M ++   P 
Sbjct: 496 YCLDGKVDEATKLLEGMVLDGVKPNEVTYNTIINGYCKNGRIEDACSLFRQMASKGVNPG 555

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC------------- 315
              Y  +++GL ++R+   A  ++  + + G       Y  ++ GLC             
Sbjct: 556 IVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFH 615

Query: 316 ----------------------KMGWLGDARKMWFEMIHKGLLPNEYTY 342
                                 K G   +A+ ++  ++ +GL+PN  TY
Sbjct: 616 NLCLIDFHLQNRTFNIMIDALLKGGRHDEAKDLFASLLARGLVPNVVTY 664


>gi|308044519|ref|NP_001183314.1| uncharacterized protein LOC100501715 [Zea mays]
 gi|238010730|gb|ACR36400.1| unknown [Zea mays]
          Length = 320

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 148/290 (51%), Gaps = 30/290 (10%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           ++ I+C C  G ++ AF AF      G                        W++ + ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTG------------------------WRVQNVVLN 68

Query: 202 SGYLIQAFCNDGKVSEGYELL-RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
              LI+  C+  +  +  +++ R++ E G  P+  ++N LI   C +K      ELL  M
Sbjct: 69  Q--LIKGLCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHM 126

Query: 261 VAR---NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            A    N +PD  +Y  VI+GL K  +  +AY +F+++  +G+ PD V Y++VI GLCK 
Sbjct: 127 TANGGYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKA 186

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A     +M++KG++PN   YNS+IHGYC +  L EA RL K+M   G     VTY
Sbjct: 187 QAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTY 246

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           N LI   C  GR  EA  +F+ M ++G   +  TY +L+ GY  +G +V+
Sbjct: 247 NMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVD 296



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 54/278 (19%), Positives = 112/278 (40%), Gaps = 41/278 (14%)

Query: 42  EIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFL------KQQNNVLLSIRFFQW 95
           ++ K +C   RT    +  +   +P   +   +F    L      ++++   L +     
Sbjct: 69  QLIKGLCDGKRTGDAMDM-VFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMT 127

Query: 96  LHSHYGFSPDLVSCNVLFDSLV-EARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESG 152
            +  Y  SPD+VS N++ D L  E    K    F  +   GF P+  +    I  LC++ 
Sbjct: 128 ANGGYNCSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQ 187

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
            +++A  +  ++   GV  + + +NS                          LI  +C+ 
Sbjct: 188 AMDKAEASLQQMLYKGVMPNTRPYNS--------------------------LIHGYCSL 221

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G++ E   LL+++   GL      +N LI  +C+         +  +MV R + P+  TY
Sbjct: 222 GQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTY 281

Query: 273 EEVINGLCKSRKRLEAYRVF-----NDLKERGYVPDTV 305
             +++G       ++ + +      +++++ G  P+ V
Sbjct: 282 CSLLHGYATKGALVDMHDLLDLMIRDEMRQNGLRPNLV 319


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 144/284 (50%), Gaps = 9/284 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           ESG + +A   F   K+  +     T    L   ++     LVW  Y +++E GY     
Sbjct: 78  ESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLY 137

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+Q FC +G++     +   + + GL P   +FN LI+ + +  +      L   M
Sbjct: 138 FFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAM 197

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            A    PD +TY  +INGLCK  K  EA  +FN++ + G VP+ V +TT+IHG CK   +
Sbjct: 198 HASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKV 257

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+ +GL P+  TYN++I+G C+   L++   L  EM+  G     ++Y TL
Sbjct: 258 DLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTL 317

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           I G C  G  + A  L  +M Q+ I  D + Y  LI   C+EG+
Sbjct: 318 IDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGR 361



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 151/316 (47%), Gaps = 12/316 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L+E R FK+  DF         P SL  +   +Q  C+ G +  A   F  +
Sbjct: 103 TCRKVLEHLMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            + G+  S+ ++N+ + G IK+   D  ++L   +  SG          LI   C +GK+
Sbjct: 163 TKWGLRPSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKL 222

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  EL  ++L++GLVP    F  LI   C+ +      E+   M+++  +PD  TY  +
Sbjct: 223 DEANELFNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTL 282

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK  +  + + + +++   G  PD + YTT+I G CK G L  A ++  +MI + +
Sbjct: 283 IYGLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESI 342

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I   CR     +A+++ +EML  G      TY  +I   C    +  A  
Sbjct: 343 RLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASK 402

Query: 396 LFEEMAQKGIFRDVIT 411
           L  EM + G    V+T
Sbjct: 403 LLREMQRDGPLPGVVT 418



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 116/225 (51%), Gaps = 3/225 (1%)

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTM 260
           SG +I A+   G V +  +  R   +  + VP +T   K++    E + F  V +    +
Sbjct: 70  SGLMI-AYLESGFVRDAVQCFRLTKQHKIRVPFDTC-RKVLEHLMEFRYFKLVWDFYKEV 127

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +        + +  ++   CK  +   A  VF+ + + G  P  V + T+I+G  K+G L
Sbjct: 128 LECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDL 187

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +  ++   M   G  P+ YTY+ +I+G C+   L+EA  L  EMLD G     VT+ TL
Sbjct: 188 DEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTL 247

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C + + D A  ++++M  +G+  D+ITYNTLI G CK+G++
Sbjct: 248 IHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGEL 292



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 83/193 (43%), Gaps = 30/193 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNP 138
           +   V L++  ++ + S  G SPDL++ N L   L +    K   D +D     G  P+ 
Sbjct: 253 KNEKVDLAMEIYKQMLSQ-GLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNGLKPDK 311

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S    I   C+ G +E A               ++  N  +   I++D  D+ +     
Sbjct: 312 ISYTTLIDGSCKEGDLEIA---------------LELRNKMIQESIRLD--DVAYTA--- 351

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G+ S+  ++LR++L  GL P+N  +  +I+ FC+K++    S+LL 
Sbjct: 352 ------LISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLR 405

Query: 259 TMVARNRAPDNFT 271
            M      P   T
Sbjct: 406 EMQRDGPLPGVVT 418


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 166/337 (49%), Gaps = 14/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+LV+CN+L +   +      AF V    L   G++PN  +    I+ LC  G I +
Sbjct: 117 GIKPNLVNCNILINCFCQLGLIPFAFSVFAKIL-KMGYNPNTITFTTLIKGLCLKGQIHQ 175

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYHDLIESGY-----LIQ 207
           A     KL  +G   +  ++ + + G  K+  T    DL+ ++   L++        +I 
Sbjct: 176 ALNFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIID 235

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C D  V++ ++L  +++  G+ P    ++ LIS F          +L + M++ N  P
Sbjct: 236 GMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKP 295

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +T+  +++  CKS K   A ++ +++ +RG  P+ V Y++++  LCK   +  A  + 
Sbjct: 296 DVYTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALL 355

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            ++  +G+ PN +TY  +I G C    LE+A+ + +++L KGY  T VTY  +  G C  
Sbjct: 356 TKLKDQGIRPNMHTYTILIDGLCTSGKLEDARNIFEDLLVKGYDITVVTYIVMFYGFCKK 415

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G  DEA  L  +M + G   D  TY  +     K+G+
Sbjct: 416 GLFDEASALLSKMEENGCIPDAKTYELIKLSLFKKGE 452



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 154/326 (47%), Gaps = 29/326 (8%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P  +  N +  SLV+++ +   +     ++  G  PN  +  + I C C+ GLI  AF 
Sbjct: 84  TPPAIEFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFS 143

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
            F+K+ +MG   +  T+ +                          LI+  C  G++ +  
Sbjct: 144 VFAKILKMGYNPNTITFTT--------------------------LIKGLCLKGQIHQAL 177

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
               +++  G      ++  LI   C+        +LL  +  +   P+   Y  +I+G+
Sbjct: 178 NFHDKLVALGFQFNQISYGTLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGM 237

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK +   +A+ +++++  +G  P+ V Y+ +I G   +G L DA  ++ +MI + + P+ 
Sbjct: 238 CKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDV 297

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           YT+N ++  +C+   +  A +L  EM D+G     VTY++++  LC   R D+A  L  +
Sbjct: 298 YTFNILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTK 357

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  +GI  ++ TY  LI G C  GK+
Sbjct: 358 LKDQGIRPNMHTYTILIDGLCTSGKL 383


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/311 (28%), Positives = 149/311 (47%), Gaps = 9/311 (2%)

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F+V   F+      P   S  + I  LC +G ++ A   F  +  +G   ++  +N+ + 
Sbjct: 401 FEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLID 460

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                +R +  + L  ++  SG+         +    C    V+   +++R++   G  P
Sbjct: 461 KLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEP 520

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +  L+ + C++K        L  MV     PD   Y   I+G  K +   +A  +F
Sbjct: 521 WIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIF 580

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            D+  RGY PD V Y T+I+G CK+  + +A  +  EM+ KGL+P+  TYN +I G+C+ 
Sbjct: 581 RDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKN 640

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            ++++A      M+ K      +TY TLI GLC  GR D+A HL+ EM  KG   + I++
Sbjct: 641 GDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF 700

Query: 413 NTLIQGYCKEG 423
             LI G CK G
Sbjct: 701 IALIHGLCKCG 711



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 130/273 (47%), Gaps = 10/273 (3%)

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  +KEM V     +++  + G     + DL   L+ D++  G          LI    N
Sbjct: 406 FFMVKEM-VRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSN 464

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             ++ E Y LL+++   G  P     N +    C +++     +++  M      P    
Sbjct: 465 SNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKH 524

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK ++  EA     ++   G++PD V Y+  I G  K+  +  A +++ ++ 
Sbjct: 525 YTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDIC 584

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G  P+   YN++I+G+C++  + EA  +  EM+ KG   + VTYN LI G C +G  D
Sbjct: 585 ARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDID 644

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +A+H    M  K    +VITY TLI G C  G+
Sbjct: 645 QAFHCLSRMVGKEREPNVITYTTLIDGLCNAGR 677



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 155/376 (41%), Gaps = 39/376 (10%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +Q+ V  +++ F+ +    GF+PD+   + L   L   +  + A+  L      G  P+ 
Sbjct: 275 RQSRVDKALQLFKKMQKS-GFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDI 333

Query: 139 NSLELYIQCLCES----GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
             L   I    E      LIEE      +L+++     +  +NS L G +     D  + 
Sbjct: 334 QILSKLIPYCSEEVDIYRLIEE------RLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYY 387

Query: 195 LYHDLIESGY-------------------------LIQAFCNDGKVSEGYELLRQVLEDG 229
           L   +    Y                         +I   CN GK+     L R ++  G
Sbjct: 388 LLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVG 447

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
                  +N LI +            LL  M      P  FT+  +   LC+      A 
Sbjct: 448 CKQNVLLYNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGAL 507

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +  +++  G+ P    YT ++  LCK     +A     EM+ +G LP+   Y++ I G+
Sbjct: 508 DMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGF 567

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            +I  +++A  + +++  +GY    V YNTLI G C   R  EA+ + +EM  KG+   V
Sbjct: 568 VKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSV 627

Query: 410 ITYNTLIQGYCKEGKI 425
           +TYN LI G+CK G I
Sbjct: 628 VTYNLLIDGWCKNGDI 643



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 146/331 (44%), Gaps = 19/331 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELY---IQCLCESGLIEEAFC 159
           P   S +++ D L       +A+  F D        N L LY   I  L  S  +EE + 
Sbjct: 415 PXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVL-LYNNLIDKLSNSNRLEECYL 473

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL--YHDLIESGY---------LIQA 208
              ++K  G   +  T NS + GC+   R D+   L    ++   G+         L++ 
Sbjct: 474 LLKEMKGSGFRPTQFTHNS-IFGCL-CRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQ 531

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   + +E    L +++ +G +P+  A++  I  F + K   +  E+   + AR   PD
Sbjct: 532 LCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPD 591

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +ING CK ++  EA+ + +++  +G VP  V Y  +I G CK G +  A     
Sbjct: 592 VVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLS 651

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K   PN  TY ++I G C     ++A  L  EM  KG     +++  LI GLC  G
Sbjct: 652 RMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCG 711

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             D A   F EM ++    D I Y  LI  +
Sbjct: 712 WPDAALLYFREMGERET-PDTIVYVALITSF 741



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M      PD +T   V+   C SRK  +A  VFN++  RG+V   V+   V+    K
Sbjct: 182 LKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLT-FSK 240

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A ++   M   G+  NE T+  +IHG+ R   +++A +L K+M   G+      
Sbjct: 241 CGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSV 300

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           Y+ LI GLC     ++A HL  EM + GI  D+   + LI  YC E
Sbjct: 301 YDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIP-YCSE 345



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 80/392 (20%), Positives = 145/392 (36%), Gaps = 103/392 (26%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK----VAMDFLDSTGFSPNPNSLEL 143
           ++ RFF W     GF+ +  + N +   L  AR       ++MD ++S            
Sbjct: 110 IAYRFFNWASDQGGFNHNCYTYNAMASCLSHARQNAPLSLLSMDIVNSR----------- 158

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
                          CA S     G  G+I    S           DLV     ++ +SG
Sbjct: 159 ---------------CAMSP----GALGAISKSGS----------IDLVEMRLKEMCDSG 189

Query: 204 Y---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           +         ++QA+CN  K  +   +  ++   G V +    + L+  F +     +  
Sbjct: 190 WEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGWV-DGHVLSILVLTFSKCGEVDKAF 248

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           EL+  M       +  T+  +I+G  +  +  +A ++F  +++ G+ PD  +Y  +I GL
Sbjct: 249 ELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQKSGFAPDVSVYDALIGGL 308

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYT--------------------------------- 341
           C    +  A  +  EM   G+ P+                                    
Sbjct: 309 CAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYRLIEERLEDLDTEAMLLL 368

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET----------------TVTYNTLIAGLC 385
           YNS+++G     ++++A  L   M    Y +                 T +++ +I GLC
Sbjct: 369 YNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLC 428

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             G+ D A  LF +M + G  ++V+ YN LI 
Sbjct: 429 NTGKLDLALSLFRDMVRVGCKQNVLLYNNLID 460



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 86/217 (39%), Gaps = 13/217 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ +   D  V+ +A   A++ F D  + G+ P+  +    I   C+   + EA
Sbjct: 552 GFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEA 611

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++   G+  S+ T+N  + G  K    D  +             ++I    LI  
Sbjct: 612 HDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDG 671

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+  +   L  ++   G  P   +F  LI   C K  +   + L    +     PD
Sbjct: 672 LCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLC-KCGWPDAALLYFREMGERETPD 730

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
              Y  +I     ++    A+ +  ++  +G  PD +
Sbjct: 731 TIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPL 767


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 153/328 (46%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V  N L D    A   + A+     +D    SPN  +    I  LC+SG +E A
Sbjct: 207 GFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERA 266

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FS++ E G+  ++ T+ +                          LIQ  CN+G +  
Sbjct: 267 MVLFSRMVEAGLEPNVVTYTA--------------------------LIQGQCNEGHLQC 300

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            + LL  +  +GLVP +  F+ LI   C+++        L ++V +    +   Y  +I+
Sbjct: 301 AFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLID 360

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK+ K   A  +   +   G+VPD   Y+++I GLC+   L  A  M  +M+ KG+  
Sbjct: 361 GLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQA 420

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  +I    R    E  K++  +M+  G     VTY   +   C  GR ++A  + 
Sbjct: 421 SPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMI 480

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +M  +G+F +++TYNTLI+GY   G +
Sbjct: 481 VQMVDRGVFPNLVTYNTLIRGYANLGLV 508



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 138/295 (46%), Gaps = 26/295 (8%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S GF PN       I   C +G +E A   F  +       +++T+              
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTE------------ 252

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                         LI   C  GKV     L  +++E GL P    +  LI   C + + 
Sbjct: 253 --------------LIHGLCKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                LLH M      P+++T+  +I+ LCK  K  EA      L ++G   + V+YT++
Sbjct: 299 QCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSL 358

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I GLCK G +  A ++  +MI +G +P+ ++Y+S+I G CR   L +A  + ++M++KG 
Sbjct: 359 IDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGI 418

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + VTY  +I  L     ++    +F++M   GI  D++TY   ++ YC+EG++
Sbjct: 419 QASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRM 473



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 106/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI A+C  G +    + L  +L  GL P++ A+   +  +C          +   M  R 
Sbjct: 78  LINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRG 137

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                FTY  +++GL  +    EA  VF  ++     PDT +Y T++HGLC+ G   +A 
Sbjct: 138 CLRTAFTYTALLHGLLGAGMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAE 197

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  E +  G  PN   YN++I GYC    +E A ++ + M          TY  LI GL
Sbjct: 198 VLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGL 257

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G+ + A  LF  M + G+  +V+TY  LIQG C EG +
Sbjct: 258 CKSGKVERAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHL 298



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/331 (26%), Positives = 136/331 (41%), Gaps = 10/331 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           P L   N L  +L   R F   M+ L S   + N  +    I   C +G I  A    + 
Sbjct: 39  PPLRCLNTLLMALARHRMFP-DMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTS 97

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC---------NDGK 214
           L   G+      + S +LG  +        +++  +   G L  AF            G 
Sbjct: 98  LLHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMPLRGCLRTAFTYTALLHGLLGAGM 157

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V E   +   +  D   P+   +  ++   CE         LL   ++    P+   Y  
Sbjct: 158 VREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNA 217

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G C + +   A +VF  +      P+   YT +IHGLCK G +  A  ++  M+  G
Sbjct: 218 LIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG 277

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L PN  TY ++I G C   +L+ A RL   M   G      T++ LI  LC   + +EA 
Sbjct: 278 LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEEAQ 337

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                + +KG+  + + Y +LI G CK GKI
Sbjct: 338 LFLGSLVKKGVKVNEVVYTSLIDGLCKTGKI 368



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/262 (21%), Positives = 113/262 (43%), Gaps = 30/262 (11%)

Query: 112 LFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           L D L +      A   M  + S GF P+ +S    I  LC    + +A      + E G
Sbjct: 358 LIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKG 417

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGY 219
           +  S  T+   +   ++   ++   K++  +I +G           ++++C +G++ +  
Sbjct: 418 IQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAE 477

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT---MVARNRAPDNFTYEEVI 276
            ++ Q+++ G+ P    +N LI  +    N G VS+   T   MV +   P+  +Y  ++
Sbjct: 478 SMIVQMVDRGVFPNLVTYNTLIRGY---ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534

Query: 277 NGLCK---SRKRLEAYRV---------FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             + K   S   ++ +++           D+ ER       +Y+  I  LC++  L +A+
Sbjct: 535 RLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEEAK 594

Query: 325 KMWFEMIHKGLLPNEYTYNSMI 346
             +  M +  L P+E  Y S+I
Sbjct: 595 HFFMGMQNANLTPSEDVYTSII 616


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 65  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCKKVLEHLMKLKYFKLVWGFYKEILECGY 124

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ +    +      
Sbjct: 125 PASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 184

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K   A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 185 LKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHC 244

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L  +  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 245 KNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKGLKPDKI 304

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M Q+ I  D + Y TLI G C+EG+ V+
Sbjct: 305 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVD 356


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 156/312 (50%), Gaps = 21/312 (6%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----D 190
           +P  ++  + I C C +G ++  F A   + + G      T+   L G     RT    D
Sbjct: 89  TPTVHTYAILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMD 148

Query: 191 LVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED---GLVPENTAFNKLI 241
           +V +         D+     L++  C++ +  E  ELL  + +D   G  P+  ++N ++
Sbjct: 149 IVLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVL 208

Query: 242 SRFCEK--------KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           + F ++        +   +  E+L+TMV     PD  TY  +++G C S +  EA     
Sbjct: 209 NGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLK 268

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            ++  G  P+ V Y+++++ LCK G   +ARK++  M  +GL P+  TY +++ G+C+  
Sbjct: 269 KMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEG 328

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            + E+++L   M+  G     +TYNTLI G CL G+ DEA  L   M   G+  D++TY 
Sbjct: 329 RVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYG 388

Query: 414 TLIQGYCKEGKI 425
           TLI GYC+  ++
Sbjct: 389 TLINGYCRVSRM 400



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 160/345 (46%), Gaps = 24/345 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D ++   L   L   +    AMD     +   G  P+  S    ++ LC+    +E
Sbjct: 122 GFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLLKGLCDENRSQE 181

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIK--------IDRTDLVWKLYHDLIESGYL 205
           A      + +    GS   + ++N+ L G  K            D   ++ + ++++G +
Sbjct: 182 ALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVM 241

Query: 206 ---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                    +  +C+ G+  E    L+++  DG+ P    ++ L++  C+        ++
Sbjct: 242 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 301

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             +M  R   PD  TY  ++ G CK  + +E+ ++F+ +   G  PD + Y T+I G C 
Sbjct: 302 FDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCL 361

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +A K+   M+  G+ P+  TY ++I+GYCR+  +++A  L KEM+  G     +T
Sbjct: 362 AGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIIT 421

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN ++ GL    RT  A  L+  + + G   ++ TYN ++ G CK
Sbjct: 422 YNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCK 466



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 144/296 (48%), Gaps = 25/296 (8%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------- 203
           E+A   F +L   G   SI   N AL    +      V + Y+ +  +G           
Sbjct: 37  EDARHVFDELLRRGRGASIYGLNRALADVARHSPAAAVSR-YNRMARAGAGKVTPTVHTY 95

Query: 204 -YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-EKKNFGRVSELLHTMV 261
             LI   C  G++  G+  L  V++ G   +   F  L+   C +K+    +  +L  M 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 262 ARNRAPDNFTYEEVINGLC---KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
                PD F+Y  ++ GLC   +S++ LE   +  D +  G  PD V Y TV++G  K G
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEG 215

Query: 319 --------WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
                    +  A ++   M+  G++P+  TYNS++HGYC     +EA    K+M   G 
Sbjct: 216 IQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGV 275

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               VTY++L+  LC +GR+ EA  +F+ M ++G+  D+ TY TL+QG+CKEG+++
Sbjct: 276 EPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVI 331



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 102/414 (24%), Positives = 185/414 (44%), Gaps = 31/414 (7%)

Query: 40  YTEIAKQVCKITRTKPRWEQTL-----LSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +  L     L  IP  F++N+ L   + L  +N    ++   
Sbjct: 130 FTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDVFSYNNLL---KGLCDENRSQEALELL 186

Query: 94  QWLHSHYGFS--PDLVSCNVLFDSL--------VEARAFKVAMDFLDS---TGFSPNPNS 140
             +    G    PD+VS N + +          + A+A   AM+ L++    G  P+  +
Sbjct: 187 HMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMT 246

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
               +   C SG  +EA     K++  GV  ++ T++S +    K  R+    K++  + 
Sbjct: 247 YNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMT 306

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           + G          L+Q  C +G+V E  +L   ++  G+ P+   +N LI   C      
Sbjct: 307 KRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMD 366

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
             ++LL +MV+    PD  TY  +ING C+  +  +A  +F ++   G  P+ + Y  ++
Sbjct: 367 EATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIIL 426

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GL        A++++  +   G      TYN ++HG C+ +  +EA R+ + +      
Sbjct: 427 QGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQ 486

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             T T+N +I  L   GR DEA  LF   +  G+  DV TY+ + +   ++G +
Sbjct: 487 LETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSL 540


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 9/314 (2%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           D L EA      +D   S G +P+       I+ LC  G   +A       +  G    +
Sbjct: 57  DDLAEAARL---VDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDV 113

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDL--IESGY----LIQAFCNDGKVSEGYELLRQVLE 227
             +N+ + G  +  + D   +L   +      Y    +I+  C+ G+V E   LL  +L 
Sbjct: 114 FAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 173

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            G  P    +  L+   C+   FG+  E+L  M A+   P+  TY  +ING+C+  +  +
Sbjct: 174 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 233

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A    N L   G+ PDTV YTTV+ GLC      D  +++ EM+ K  +PNE T++ ++ 
Sbjct: 234 AREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 293

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            +CR   +E A ++ ++M   G    T   N +I  +C  GR D+A+     M   G   
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 408 DVITYNTLIQGYCK 421
           D I+Y T+++G C+
Sbjct: 354 DTISYTTVLKGLCR 367



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 32/330 (9%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G  P +V+  VL +++ ++  F  AM+ LD   + G +PN  +  + I  +C  G ++
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           +A    ++L   G                             D +    +++  C   + 
Sbjct: 233 DAREFLNRLSSYG--------------------------FQPDTVSYTTVLKGLCAAKRW 266

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  +++E   +P    F+ L+  FC      R  ++L  M     A +      V
Sbjct: 267 EDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIV 326

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           IN +CK  +  +A++  N++   G  PDT+ YTTV+ GLC+     DA+++  EM+ K  
Sbjct: 327 INTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNC 386

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PNE T+N+ I   C+   +E+A  L ++M + G     VTYN L+ G C+ GR D A  
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LF  M  K    + ITY TL+ G C   ++
Sbjct: 447 LFYSMPCKP---NTITYTTLLTGLCNAERL 473



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G + D+ + N L            A   + S   +P+  +    I+ LC+ G + EA   
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              +   G   S+ T+   L    K        ++  ++   G          +I   C 
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G+V +  E L ++   G  P+  ++  ++   C  K +  V EL   M+ +N  P+  T
Sbjct: 228 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVT 287

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           ++ ++   C+      A +V   +   G   +T +   VI+ +CK G + DA +    M 
Sbjct: 288 FDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMG 347

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  +Y +++ G CR +  E+AK L KEM+ K      VT+NT I  LC  G  +
Sbjct: 348 SYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIE 407

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L E+M++ G   +++TYN L+ G+C +G++
Sbjct: 408 QATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRV 441



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 15/340 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S YGF PD VS   +   L  A+ ++   +    +      PN  + ++ ++  C  G++
Sbjct: 242 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV 301

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           E A     ++   G   +    N  +    K  R D  ++  +         D I    +
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C   +  +  ELL++++     P    FN  I   C+K    + + L+  M     
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +  TY  ++NG C   +   A  +F  +  +   P+T+ YTT++ GLC    L  A +
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 478

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM+ K   PN  T+N ++  +C+   ++EA  L ++M++ G     +TYNTL+ G+ 
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 538

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++EA  L   +   G+  D++TY+++I    +E ++
Sbjct: 539 NDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 578



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 145/325 (44%), Gaps = 11/325 (3%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           FQ+L++   YG SPD +S   +   L  A  ++ A + L         PN  +   +I  
Sbjct: 340 FQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICI 399

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------IE 201
           LC+ GLIE+A     ++ E G   +I T+N+ + G     R D   +L++ +      I 
Sbjct: 400 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTIT 459

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L+   CN  ++    ELL ++L+    P    FN L+S FC+K       EL+  M+
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P+  TY  +++G+       EA  + + L   G  PD V Y+++I  L +   + 
Sbjct: 520 EHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 579

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A KM+  +   G+ P    YN ++   C+  N + A      M+  G     +TY TLI
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 639

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIF 406
            GL       E   L  E+  +G+ 
Sbjct: 640 EGLANEDFLKETRDLLRELCSRGVL 664



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P N    +LI+R     +    + L+    +R  APD +   ++I  LC+  +  +A RV
Sbjct: 45  PANARLRRLIAR----DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARV 100

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
               +  G   D   Y T++ G C+ G L  AR++   M    + P+ YTY  +I G C 
Sbjct: 101 LRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCD 157

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              + EA  L  +ML +G   + VTY  L+  +C      +A  + +EM  KG   +++T
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 412 YNTLIQGYCKEGKI 425
           YN +I G C+EG++
Sbjct: 218 YNVIINGMCREGRV 231


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 77  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 136

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +FC +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 137 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFR 196

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +   +F+++ + G VP+ V +TT+I G C
Sbjct: 197 LKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHC 256

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 257 KNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 316

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+     M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 317 TYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVD 368



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 156/335 (46%), Gaps = 12/335 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +   C+ G
Sbjct: 95  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEG 154

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   +  ++L   +  SG         
Sbjct: 155 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYS 214

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L+ GLVP    F  LI   C+        E+   M+++
Sbjct: 215 VLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 274

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 275 SLSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 334

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 335 FEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 394

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            C  G       L +EM + G    V+TYN L+ G
Sbjct: 395 FCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 176/360 (48%), Gaps = 18/360 (5%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTG-FSPN 137
           +  + ++++ FF  + +   F P +   N+LF  + +++ +  A+     L S G  S +
Sbjct: 51  ETADAVVAVDFFHRMLTLTPF-PCIQDFNLLFGLVAKSQHYATAISLIKILHSLGDGSAD 109

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKL- 195
             +L + I CLC        F     + ++G+  ++ T N+ + G CI+ D    +W + 
Sbjct: 110 VCTLNIAINCLCHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVE 169

Query: 196 ------YH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
                 YH +    G L+   C  G  S   E L+++++  L P    +N ++   C++ 
Sbjct: 170 KMENLGYHCNARTYGALVNGLCKIGDTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRG 229

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL-EAYRVFNDL-KERGYVPDTVM 306
             G    LLH M   N  P+  TY  +I GLC       E   +FN++  E+G VPD   
Sbjct: 230 LVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQT 289

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           ++ ++ G CK G L  A  +   M+  G+ PN  TYNS+I GYC    +EEA R+   M+
Sbjct: 290 FSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMV 349

Query: 367 DKGYG--ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +G G   + VT+N+LI G C     D+A  L  EM  KG+  DV T+ +LI G+C+  K
Sbjct: 350 REGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKK 409



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 156/346 (45%), Gaps = 16/346 (4%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESG 152
           L +  G  P LV+ N + + L        A+   + +++ G+  N  +    +  LC+ G
Sbjct: 135 LMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNARTYGALVNGLCKIG 194

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESG 203
               A     K+ +  +  ++  +N+ L G  K         L H++         +   
Sbjct: 195 DTSGALECLKKMVKRNLGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYN 254

Query: 204 YLIQAFCND-GKVSEGYELLRQ-VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
            LIQ  C + G   EG  L  + V E G+VP+   F+ L+  FC++    R   ++  MV
Sbjct: 255 CLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMV 314

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL--KERGYVPDTVMYTTVIHGLCKMGW 319
                P+  TY  +I G C   +  EA RVF  +  +  G +P  V + ++IHG CK+  
Sbjct: 315 RIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKE 374

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A  +  EM+ KGL P+ +T+ S+I G+C +     A+ L   M + G      T   
Sbjct: 375 VDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAV 434

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++ GL       EA  LF  M + G+  D++ YN ++ G CK GK+
Sbjct: 435 VLDGLLKCWLDSEAVTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKL 480



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 154/337 (45%), Gaps = 16/337 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLC-ESGLIEEA 157
             P++V  N + D L +      A+  L   G     PN  +    IQ LC E G   E 
Sbjct: 211 LGPNVVVYNAILDGLCKRGLVGEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREG 270

Query: 158 FCAFSKL-KEMGVFGSIKTWNSALLGCIK---IDRTDLVWKLY------HDLIESGYLIQ 207
              F+++  E G+   ++T++  + G  K   + R + V           +++    LI 
Sbjct: 271 VGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIA 330

Query: 208 AFCNDGKVSEGYELLRQVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
            +C   ++ E   +   ++ +G   +P     N LI  +C+ K   +   LL  MV +  
Sbjct: 331 GYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGKGL 390

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FT+  +I G C+ +K L A  +F  +KE G VP+      V+ GL K     +A  
Sbjct: 391 DPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEAVT 450

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M+  GL  +   YN M+ G C++  L +A++L   +L KG    + TYN +I GLC
Sbjct: 451 LFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLC 510

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             G  D+A  L  +M + G   +  +YN  +QG  ++
Sbjct: 511 REGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRK 547



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 126/308 (40%), Gaps = 16/308 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELY 144
            +  F  + +  G  PD+ + ++L D   +     RA  V + F+   G  PN  +    
Sbjct: 270 GVGLFNEMVAEKGIVPDVQTFSILVDGFCKEGLLLRAESV-VGFMVRIGVEPNVVTYNSL 328

Query: 145 IQCLCESGLIEEAFCAFSKL--KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           I   C    +EEA   F  +  +  G   S+ T NS + G  K+   D    L  +++  
Sbjct: 329 IAGYCLRSQMEEAMRVFGLMVREGEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMVGK 388

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G          LI  FC   K     EL   + E G VP       ++    +       
Sbjct: 389 GLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLDSEA 448

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L   M+      D   Y  +++G+CK  K  +A ++ + +  +G   D+  Y  +I G
Sbjct: 449 VTLFRAMMKSGLDLDIVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKG 508

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LC+ G L DA ++  +M   G  PN+ +YN  + G  R  ++  +++  + M DKG+   
Sbjct: 509 LCREGLLDDAEELLRKMKENGCPPNKCSYNVFVQGLLRKYDIARSRKYLQIMKDKGFPVD 568

Query: 374 TVTYNTLI 381
             T   LI
Sbjct: 569 ATTAELLI 576


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 9/314 (2%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           D L EA      +D   S G +P+       I+ LC  G   +A       +  G    +
Sbjct: 57  DDLAEAARL---VDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDV 113

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDL--IESGY----LIQAFCNDGKVSEGYELLRQVLE 227
             +N+ + G  +  + D   +L   +      Y    +I+  C+ G+V E   LL  +L 
Sbjct: 114 FAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLH 173

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            G  P    +  L+   C+   FG+  E+L  M A+   P+  TY  +ING+C+  +  +
Sbjct: 174 RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 233

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A    N L   G+ PDTV YTTV+ GLC      D  +++ EM+ K  +PNE T++ ++ 
Sbjct: 234 AREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVR 293

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            +CR   +E A ++ ++M   G    T   N +I  +C  GR D+A+     M   G   
Sbjct: 294 FFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSP 353

Query: 408 DVITYNTLIQGYCK 421
           D I+Y T+++G C+
Sbjct: 354 DTISYTTVLKGLCR 367



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 32/330 (9%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G  P +V+  VL +++ ++  F  AM+ LD   + G +PN  +  + I  +C  G ++
Sbjct: 173 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 232

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           +A    ++L   G                             D +    +++  C   + 
Sbjct: 233 DAREFLNRLSSYG--------------------------FQPDTVSYTTVLKGLCAAKRW 266

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  +++E   +P    F+ L+  FC      R  ++L  M     A +      V
Sbjct: 267 EDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIV 326

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           IN +CK  +  +A++  N++   G  PDT+ YTTV+ GLC+     DA+++  EM+ K  
Sbjct: 327 INTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNC 386

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PNE T+N+ I   C+   +E+A  L ++M + G     VTYN L+ G C+ GR D A  
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LF  M  K    + ITY TL+ G C   ++
Sbjct: 447 LFYSMPCKP---NTITYTTLLTGLCNAERL 473



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G + D+ + N L            A   + S   +P+  +    I+ LC+ G + EA   
Sbjct: 108 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 167

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              +   G   S+ T+   L    K        ++  ++   G          +I   C 
Sbjct: 168 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 227

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G+V +  E L ++   G  P+  ++  ++   C  K +  V EL   M+ +N  P+  T
Sbjct: 228 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVT 287

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           ++ ++   C+      A +V   +   G   +T +   VI+ +CK G + DA +    M 
Sbjct: 288 FDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMG 347

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  +Y +++ G CR +  E+AK L KEM+ K      VT+NT I  LC  G  +
Sbjct: 348 SYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIE 407

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L E+M++ G   +++TYN L+ G+C +G++
Sbjct: 408 QATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRV 441



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 15/340 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S YGF PD VS   +   L  A+ ++   +    +      PN  + ++ ++  C  G++
Sbjct: 242 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV 301

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           E A     ++   G   +    N  +    K  R D  ++  +         D I    +
Sbjct: 302 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 361

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C   +  +  ELL++++     P    FN  I   C+K    + + L+  M     
Sbjct: 362 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 421

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +  TY  ++NG C   +   A  +F  +  +   P+T+ YTT++ GLC    L  A +
Sbjct: 422 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 478

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM+ K   PN  T+N ++  +C+   ++EA  L ++M++ G     +TYNTL+ G+ 
Sbjct: 479 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 538

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++EA  L   +   G+  D++TY+++I    +E ++
Sbjct: 539 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 578



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 146/325 (44%), Gaps = 11/325 (3%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           FQ+L++   YG SPD +S   +   L  A  ++ A + L         PN  +   +I  
Sbjct: 340 FQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICI 399

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------IE 201
           LC+ GLIE+A     ++ E G   +I T+N+ + G     R D   +L++ +      I 
Sbjct: 400 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTIT 459

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L+   CN  ++    ELL ++L+    P    FN L+S FC+K       EL+  M+
Sbjct: 460 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 519

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P+  TY  +++G+ K     EA  + + L   G  PD V Y+++I  L +   + 
Sbjct: 520 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 579

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A KM+  +   G+ P    YN ++   C+  N + A      M+  G     +TY TLI
Sbjct: 580 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 639

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIF 406
            GL       E   L  E+  +G+ 
Sbjct: 640 EGLANEDFLKETRDLLRELCSRGVL 664



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 95/194 (48%), Gaps = 7/194 (3%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P N    +LI+R     +    + L+    +R  APD +   ++I  LC+  +  +A RV
Sbjct: 45  PANARLRRLIAR----DDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARV 100

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
               +  G   D   Y T++ G C+ G L  AR++   M    + P+ YTY  +I G C 
Sbjct: 101 LRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCD 157

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              + EA  L  +ML +G   + VTY  L+  +C      +A  + +EM  KG   +++T
Sbjct: 158 RGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVT 217

Query: 412 YNTLIQGYCKEGKI 425
           YN +I G C+EG++
Sbjct: 218 YNVIINGMCREGRV 231


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 160/329 (48%), Gaps = 14/329 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN--PNSL--ELYIQCLCESGLIEEAFC 159
           PD+++ N L D L +    +  +  ++     P   PN++     I   C++ +IE A  
Sbjct: 378 PDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARE 437

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F ++ + GV  ++ T N+ + G  K  R +   + ++++   G          LI+AFC
Sbjct: 438 LFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFC 497

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           N   + +  EL  ++LE G  P+   +  LIS   +     R S +L  M     +PD  
Sbjct: 498 NVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIV 557

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           ++  +ING C+  K  EAY +  +++  G  PD V Y T+I    K G    A ++  +M
Sbjct: 558 SFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGR 389
           + +GL+P   TY ++IH YC   NL+EA ++ ++M         TV YN LI  LC   +
Sbjct: 618 VKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQ 677

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            D A  L ++M  KG+  +  T+N + +G
Sbjct: 678 VDLALSLMDDMKVKGVKPNTNTFNAMFKG 706



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/339 (27%), Positives = 154/339 (45%), Gaps = 18/339 (5%)

Query: 105 DLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           +  SCN L  +L  AR FK     +  +      PN  +  + I  LC+   ++EA   F
Sbjct: 304 EAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVF 363

Query: 162 SKLKEMGVFG-----SIKTWNSALLGCIKIDRTD----LVWKLYH------DLIESGYLI 206
            K+      G      + T+N+ + G  K+ R +    LV ++        + +    LI
Sbjct: 364 EKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLI 423

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C    +    EL  Q+ +DG+ P     N L+   C+        E  + M  +   
Sbjct: 424 DGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLK 483

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            +  TY  +I   C      +A  +F+++ E G  PD ++Y T+I GL + G L  A  +
Sbjct: 484 GNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFV 543

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M   G  P+  ++N +I+G+CR + L+EA  + KEM + G     VTYNTLI+    
Sbjct: 544 LSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSK 603

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G    A+ L ++M ++G+   V+TY  LI  YC  G +
Sbjct: 604 TGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNL 642



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/368 (26%), Positives = 168/368 (45%), Gaps = 27/368 (7%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD------ 130
           REF K+ N +L  ++            P++V+  +L + L + R    A++  +      
Sbjct: 319 REF-KRMNTLLAEMK-------EMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGE 370

Query: 131 STGFSPNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKID 187
           S GF   P+ +     I  LC+ G  EE      +++       +  T+N  + G  K  
Sbjct: 371 SNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKAS 430

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             +   +L+  + + G          L+   C  G+++   E   ++   GL      + 
Sbjct: 431 MIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYT 490

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI  FC   N  +  EL   M+    +PD   Y  +I+GL ++ K   A  V + +KE 
Sbjct: 491 ALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEA 550

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G+ PD V +  +I+G C+   L +A +M  EM + G+ P+  TYN++I  + +  +   A
Sbjct: 551 GFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTA 610

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQ 417
            RL K+M+ +G   T VTY  LI   CL+G  DEA  +F +M+    +  + + YN LI 
Sbjct: 611 HRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILIN 670

Query: 418 GYCKEGKI 425
             C++ ++
Sbjct: 671 SLCRKNQV 678



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 78/230 (33%), Positives = 118/230 (51%), Gaps = 12/230 (5%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C  G+    +++L  +++ G V E  + N L++     + F R++ LL  M   +
Sbjct: 276 LISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMD 335

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVF---NDLKERGYV--PDTVMYTTVIHGLCKMG- 318
             P+  T+  +IN LCK R+  EA  VF   N  +  G++  PD + Y T+I GLCK+G 
Sbjct: 336 IQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGR 395

Query: 319 ---WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               LG   +M  +      +PN  TYN +I GYC+   +E A+ L  +M   G     V
Sbjct: 396 QEEGLGLVERMRSQ---PRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVV 452

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T NTL+ G+C HGR + A   F EM  KG+  + +TY  LI+ +C    I
Sbjct: 453 TLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNI 502



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 147/327 (44%), Gaps = 13/327 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ V+ N L D   +A   + A +  D     G  PN  +L   +  +C+ G I  A   
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
           F++++  G+ G+  T+ + +     ++  +   +L+ +++E+G          LI     
Sbjct: 474 FNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQ 533

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+     +L ++ E G  P+  +FN LI+ FC K       E+L  M      PD  T
Sbjct: 534 AGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVT 593

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+   K+     A+R+   + + G VP  V Y  +IH  C  G L +A K++ +M 
Sbjct: 594 YNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMS 653

Query: 332 HKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
               + PN   YN +I+  CR + ++ A  L  +M  KG    T T+N +  GL      
Sbjct: 654 STSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWL 713

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQ 417
            +A+ L + M +     D IT   L +
Sbjct: 714 SKAFELMDRMTEHACNPDYITMEILTE 740



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 131/303 (43%), Gaps = 13/303 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+ N L D + +      A++F   +   G   N  +    I+  C    IE+A
Sbjct: 446 GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKA 505

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG---CIKIDRTDLVWK------LYHDLIESGYLIQA 208
              F ++ E G       + + + G     K+DR   V           D++    LI  
Sbjct: 506 MELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLING 565

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   K+ E YE+L+++   G+ P+   +N LIS F +  +F     L+  MV     P 
Sbjct: 566 FCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPT 625

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMW 327
             TY  +I+  C +    EA ++F D+     VP +TV+Y  +I+ LC+   +  A  + 
Sbjct: 626 VVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLM 685

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M  KG+ PN  T+N+M  G    + L +A  L   M +       +T   L   L   
Sbjct: 686 DDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSAV 745

Query: 388 GRT 390
           G T
Sbjct: 746 GET 748



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 83/190 (43%), Gaps = 16/190 (8%)

Query: 251 GRVSELLHTM--VARNRA---PDNFTYEEVINGLCKSRK------RLEAYRVFNDLKERG 299
           GRV + LH +  + + +A   P++ T   V + L K  K        E   + +   E  
Sbjct: 206 GRVDDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHE 265

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P+++  T +I  LC+ G    A  +   ++  G +    + N+++    R    +   
Sbjct: 266 VFPNSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMN 325

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM---AQKGIF--RDVITYNT 414
            L  EM +       VT+  LI  LC   R DEA  +FE+M      G     DVITYNT
Sbjct: 326 TLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNT 385

Query: 415 LIQGYCKEGK 424
           LI G CK G+
Sbjct: 386 LIDGLCKVGR 395


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 144/289 (49%), Gaps = 9/289 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 68  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGY 127

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +    +      
Sbjct: 128 PASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 187

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK     +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 188 LKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 247

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++++G C+  +L +A  L  EM  KG      
Sbjct: 248 KNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKGLKPDKF 307

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+
Sbjct: 308 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 356



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/323 (27%), Positives = 150/323 (46%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ R FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 98  TCRKVLEHLMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAI 157

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C +  +
Sbjct: 158 TKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXM 217

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M+++   PD  TY  +
Sbjct: 218 DDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTL 277

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           + GLCK     +A+ + +++  +G  PD   YTT+I G CK G L  A +    MI + +
Sbjct: 278 VYGLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENI 337

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +   
Sbjct: 338 RLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 397

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 398 LLKEMQRNGHVPXVVTYNVLMNG 420


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 151/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM+ KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 149/328 (45%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F +       P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   +  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +   L  ++L+ GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 147/290 (50%), Gaps = 5/290 (1%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           S  P+ ++  +  L + GL+++A  A ++++E+ V  + +T N  LL   +   ++L W+
Sbjct: 125 SALPSVVDTLLSLLADRGLLDDAVLALARVRELRVPPNTRTCNHILLCLARERSSELAWR 184

Query: 195 LYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           L+  L          +I   C +G ++E   LL ++   G  P+   +N LI  + +   
Sbjct: 185 LFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLARMKAIGCSPDVVTYNSLIDGYGKCGE 244

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
              V +L+  M      PD  TY  ++N  CK  +   AY  F ++K  G + + V ++T
Sbjct: 245 LEEVEKLVGEMRGCGCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFST 304

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            +   CK G + +A K++ +M  KG+ PNE TY  ++ G C+   L++A  L  EM+ +G
Sbjct: 305 FVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQG 364

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
                VTY  L+ GLC  G+  EA  +F  M + GI  + + Y TLI G+
Sbjct: 365 VPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGH 414



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 156/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L +   +    + A  +   +   G   N  +   ++   C++G++ EA
Sbjct: 259 GCRPDVVTYNALVNCFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREA 318

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F++++  G+  +  T+   + G  K  R D    L +++++ G          L+  
Sbjct: 319 MKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDG 378

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV+E  ++ R +   G+      +  LI      KN  R   LL  M  +    D
Sbjct: 379 LCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELD 438

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I GLC  +K  EA  + N + E G  P+ V+YT ++    K     +A  +  
Sbjct: 439 VSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQ 498

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+  G  PN  TY +++ G C+  +++EA     +M+D G       Y  L+ GLC +G
Sbjct: 499 KMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNG 558

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R D+A  L +EM  KG+  D +   +L+ G+ K+G +
Sbjct: 559 RLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNL 595



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 144/337 (42%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+   L D   +A     A+   +     G   N  +  + +  LC+ G + EA
Sbjct: 329 GMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEA 388

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  ++  G+  +   + + + G      ++    L  ++ + G          LI  
Sbjct: 389 EDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLYGALIWG 448

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN  K+ E   LL ++ E GL P N  +  ++    + +       LL  M+     P+
Sbjct: 449 LCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPN 508

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLCK+    EA   FN + + G  P+   YT ++ GLCK G L  A  +  
Sbjct: 509 IVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLD 568

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI KG+  +     S++ G+ +  NL++A  L  +M++ G       Y   + G C   
Sbjct: 569 EMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLN 628

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA  +  EM + GI  D + YN LI    K G +
Sbjct: 629 MIQEAREVLSEMIENGITPDAVVYNCLINKCQKLGNM 665



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 119/255 (46%), Gaps = 9/255 (3%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E A    S++K+ G+   +  + + + G   + + D    L + + E G          +
Sbjct: 421 ERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNI 480

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + A     K SE   LL+++++ G  P    +  L+   C+  +        + MV    
Sbjct: 481 MDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGL 540

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+   Y  +++GLCK+ +  +A  + +++ ++G   D V+ T+++ G  K G L DA  
Sbjct: 541 EPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFA 600

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  +MI+ GL  + Y Y   + G+C ++ ++EA+ +  EM++ G     V YN LI    
Sbjct: 601 LKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVYNCLINKCQ 660

Query: 386 LHGRTDEAYHLFEEM 400
             G  +EA  L  EM
Sbjct: 661 KLGNMEEAAILQNEM 675



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 47/209 (22%), Positives = 89/209 (42%), Gaps = 12/209 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V    + D+  +AR    A+  L     +GF PN  +    +  LC++G I+EA
Sbjct: 469 GLKPNNVIYTNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEA 528

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+K+ ++G+  +++ + + + G  K  R D    L  ++I+ G          L+  
Sbjct: 529 ISHFNKMVDLGLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDG 588

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G + + + L  +++  GL  +   +   +  FC         E+L  M+     PD
Sbjct: 589 HLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPD 648

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
              Y  +IN   K     EA  + N+++ 
Sbjct: 649 AVVYNCLINKCQKLGNMEEAAILQNEMES 677


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 47/371 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ + L + L      + AMD L+     G  P  ++  + I  LC++G   EA
Sbjct: 267 GCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEA 326

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
                K+K+ G   +++T+ + + G  +  + ++   +YH ++  G              
Sbjct: 327 VKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQ 386

Query: 204 ------------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          +I+ FC+ G + +   +  Q+L+ G  P 
Sbjct: 387 LYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPN 446

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N +I  + ++        LL  M       D +TY  +I+G  +  K   A+ +FN
Sbjct: 447 VITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFN 506

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ E G  P+ V Y  +I+G   +  + DA  ++++M+  G +P+  TYN MI G+ + +
Sbjct: 507 EMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTN 566

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            + EA+    +M+ +G     +TY + I GLC +GRT  A+ +F EM ++  F ++ TY+
Sbjct: 567 RISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPNLCTYS 626

Query: 414 TLIQGYCKEGK 424
           +LI G C+EG+
Sbjct: 627 SLIDGLCQEGQ 637



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/417 (27%), Positives = 182/417 (43%), Gaps = 33/417 (7%)

Query: 21  NPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQT--LLSDIPSFNFNDPLFFRE 78
           +P++ L ++S  T    +L ++I+     I  + P WE++  L   IP      P     
Sbjct: 33  HPSSPL-SISSNTDPFPELVSKIS-----IILSSPTWERSSELSHLIPKLK---PHHVVN 83

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
            L   NN    +RFF W+   + F  D+     + + LV  R F             P  
Sbjct: 84  LLDTHNNTESVLRFFHWVSRTHFFKHDMSCFVSMLNRLVRDRLF------------VPAD 131

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYH 197
           N   L I+     G ++      S++     FG ++ ++++ L+   K D   L   +Y 
Sbjct: 132 NVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYI 191

Query: 198 DLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           +++ SG          +I+  CN GKV E   ++  +   G  P+   +  LI   C+  
Sbjct: 192 EMLNSGIRPNLFTFNAMIKILCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNG 251

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           N     E+   MV     P++ TY  +INGLC   +  EA  +  ++ ++G  P    YT
Sbjct: 252 NLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYT 311

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
             I  LC  G   +A K+  +M  +G  PN  TY ++I G  R    E A  ++ +ML  
Sbjct: 312 IPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLAD 371

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G   T VTY+ LI  L + GR + A  +FE M       +  TYN +I+G+C  G I
Sbjct: 372 GLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYI 428



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 12/339 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           HYG  PD  +   L     +     +A +  D     G  PN  +    I  LC  G +E
Sbjct: 230 HYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLE 289

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           EA     ++ + G+  ++  +   ++      R+    KL   + + G          LI
Sbjct: 290 EAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALI 349

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
                DGK      +  ++L DGLVP    ++ LI++   +  F     +   M++ +  
Sbjct: 350 SGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSL 409

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  TY  +I G C      +A  +F+ + + G  P+ + Y  +IH   K G++ +A ++
Sbjct: 410 PNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRL 469

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M   GL  + +TY ++I G+ R   LE A  L  EM++ G     VTYN +I G   
Sbjct: 470 LEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLT 529

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + D+A  LF +M + G      TYN +I G+ K  +I
Sbjct: 530 VAKVDDALALFWKMVESGNVPSSGTYNMMISGFSKTNRI 568



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 155/336 (46%), Gaps = 16/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++++ N++     +      AM  L+     G   +  +    I      G +E A
Sbjct: 442 GPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHA 501

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           F  F+++ E G+  ++ T+N+ + G + + + D    L+  ++ESG          +I  
Sbjct: 502 FSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESGNVPSSGTYNMMISG 561

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F    ++SE      ++++ GL+P    +   I   C+        ++ H M  R+  P+
Sbjct: 562 FSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDYFPN 621

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLC+  +  +A R+ +D    G  P+   YTT++ GLC  G   +A ++  
Sbjct: 622 LCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTYTTLVRGLCGKGRCYEADQLVE 677

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KGL P+E  Y +++ G C+   +E A ++   M+  G+      Y  LI  LC   
Sbjct: 678 SMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKALICALCKAN 737

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              +A  +F+ M +K    D + +  L+ G  KEG+
Sbjct: 738 FRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGE 773


>gi|255585035|ref|XP_002533226.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526958|gb|EEF29158.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 606

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 105/337 (31%), Positives = 162/337 (48%), Gaps = 16/337 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKV--AMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
           PD  S N + D L   R+ K   ++D L+    +G  P+  +    I   C  G +E+AF
Sbjct: 225 PDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAF 284

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA---------F 209
              +K+ E      + T N  L G       D   KL++  I  G  I A          
Sbjct: 285 QFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGL 344

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK-NFGRVSELLHTMVARNRAPD 268
           C +G+  E ++LL ++ E  L P+   +N ++    + +    +  +  + MV ++  PD
Sbjct: 345 CKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPD 404

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT   ++ GLC       A ++FN    +G   D V Y T+I GLCK G   +A  +  
Sbjct: 405 LFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLA 464

Query: 329 EMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           EM  K GL+P++ TYN++I GYCR   +E+A +   +M++K +     T N L+ GLC  
Sbjct: 465 EMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCRE 524

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G   +A  LF     KG   D +TYNT+I G CKEG+
Sbjct: 525 GMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGR 561



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/329 (27%), Positives = 156/329 (47%), Gaps = 29/329 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
            F PDL +CN+L   L        A+   +   S G + +  +    I  LC+ G  EEA
Sbjct: 294 SFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEA 353

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           F   ++++E  +     T+N+ L  C   D                        +G+V +
Sbjct: 354 FDLLAEMEEKKLGPDCYTYNAIL--CALADA-----------------------EGQVEK 388

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            ++   +++E    P+    N L+   C +       +L +T +++ +A D  TY  +I+
Sbjct: 389 AFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIIS 448

Query: 278 GLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           GLCK  +  EA+ +  +++E+ G VPD   Y T+I G C+ G +  A +   +M+ K   
Sbjct: 449 GLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFRNKMVEKSFK 508

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+ +T N ++ G CR   L +A +L    + KG     VTYNT+I+GLC  GR +EA+ L
Sbjct: 509 PDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDL 568

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EM +K +  D  TYN ++      G++
Sbjct: 569 LAEMKEKKLGPDCYTYNAILCALADAGRM 597



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 146/285 (51%), Gaps = 13/285 (4%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSAL--LGCIKIDRTDLVWKLYHDLIESGY------- 204
           + EA     K+K+   F    ++N+ L  L   +  +TD      ++L+ESG        
Sbjct: 208 LSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQITY 267

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I  +C +G+V + ++   +++E    P+    N L+   C +       +L +T ++
Sbjct: 268 NTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWIS 327

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM-GWLG 321
           + +A D  TY  +I+GLCK  +  EA+ +  +++E+   PD   Y  ++  L    G + 
Sbjct: 328 KGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQVE 387

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A +   +M+ K   P+ +T N ++ G C    L+ A +L    + KG     VTYNT+I
Sbjct: 388 KAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTII 447

Query: 382 AGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
           +GLC  GR +EA+ L  EM +K G+  D  TYNT+I GYC+EG++
Sbjct: 448 SGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQV 492



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 143/290 (49%), Gaps = 11/290 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC SG  +++    ++L E G+     T+N+ + G  +  + +  ++  + ++E  +   
Sbjct: 239 LCRSGKTDQSIDKLNELLESGLVPHQITYNTIIHGYCREGQVEKAFQFRNKMVEKSFKPD 298

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L++  C +G +    +L    +  G   +   +N +IS  C++  F    +LL 
Sbjct: 299 LFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLA 358

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            M  +   PD +TY  ++  L  +  ++E A++  N + E+ + PD      ++ GLC  
Sbjct: 359 EMEEKKLGPDCYTYNAILCALADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTE 418

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVT 376
           G L +A K++   I KG   +  TYN++I G C+    EEA  L  EM +K G      T
Sbjct: 419 GMLDNALKLFNTWISKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTT 478

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YNT+I G C  G+ ++A+    +M +K    D+ T N L++G C+EG +V
Sbjct: 479 YNTIILGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCREGMLV 528



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 133/286 (46%), Gaps = 16/286 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCL 148
           F  W+    G + D V+ N +   L +   F+ A D L   +     P+  +    +  L
Sbjct: 322 FNTWISK--GKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCAL 379

Query: 149 CES-GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
            ++ G +E+AF   +K+ E      + T N  L G       D   KL++  I  G  I 
Sbjct: 380 ADAEGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAID 439

Query: 208 A---------FCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           A          C +G+  E ++LL ++ E +GLVP+ T +N +I  +C +    +  +  
Sbjct: 440 AVTYNTIISGLCKEGRFEEAFDLLAEMEEKNGLVPDQTTYNTIILGYCREGQVEKAFQFR 499

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + MV ++  PD FT   ++ GLC+    ++A ++FN    +G   D V Y T+I GLCK 
Sbjct: 500 NKMVEKSFKPDLFTCNILLRGLCREGMLVKALKLFNTWISKGKAIDAVTYNTIISGLCKE 559

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           G   +A  +  EM  K L P+ YTYN+++        +E  + + K
Sbjct: 560 GRFEEAFDLLAEMKEKKLGPDCYTYNAILCALADAGRMEAEEFMSK 605



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 108/249 (43%), Gaps = 38/249 (15%)

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRF--CEKKNFGRVSELLHTMVARNRAPDNFT 271
           K+SE   L+ ++ +    P+N ++N ++     C      +  + L+ ++     P   T
Sbjct: 207 KLSEAIGLIGKMKDFSCFPDNASYNTILDVLWLCRSGKTDQSIDKLNELLESGLVPHQIT 266

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G C+  +  +A++  N + E+ + PD      ++ GLC  G L +A K++   I
Sbjct: 267 YNTIIHGYCREGQVEKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWI 326

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT------------ 379
            KG   +  TYN++I G C+    EEA  L  EM +K  G    TYN             
Sbjct: 327 SKGKAIDAVTYNTIISGLCKEGRFEEAFDLLAEMEEKKLGPDCYTYNAILCALADAEGQV 386

Query: 380 ------------------------LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
                                   L+ GLC  G  D A  LF     KG   D +TYNT+
Sbjct: 387 EKAFQFRNKMVEKSFKPDLFTCNILLRGLCTEGMLDNALKLFNTWISKGKAIDAVTYNTI 446

Query: 416 IQGYCKEGK 424
           I G CKEG+
Sbjct: 447 ISGLCKEGR 455


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L D L +A+A   A+  L      G  P+  +  + I+  C  G +EEA
Sbjct: 230 GLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEA 289

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                K+   G+   + T++  +    KI R      ++  ++  G          L+  
Sbjct: 290 VRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHG 349

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + +  +LL  ++ DG+  E+ AFN LI  + +     +       M      PD
Sbjct: 350 YATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPD 409

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  VI+ LCK+ +  +A   FN +   G  P+ + +T++IHGLC +G      ++ F
Sbjct: 410 VVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAF 469

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI++G+ P+    N+++   C+   + EA+     ++  G     V+YNTLI G C  G
Sbjct: 470 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVG 529

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DE+    + M   G+  D  TYN+L+ GY K G++
Sbjct: 530 KMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRV 566



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/307 (28%), Positives = 145/307 (47%), Gaps = 13/307 (4%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLG-CIKIDRT 189
           TG+     +L   I+ LC+    ++A    F ++ E+G    + ++N+ + G C++    
Sbjct: 120 TGWRVQNVTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQ 179

Query: 190 DLVWKLYHDLIESGY-----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           + +  L H   + GY           +I  F  +G+V + Y L  +++  GL P+   +N
Sbjct: 180 EALELLIHMTADGGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYN 239

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI   C+ +   +   +L  M  +   PD  TY  +I G C   +  EA R+   +   
Sbjct: 240 SLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS 299

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  PD V Y+ +I   CK+G   +AR ++  M+ KG  PN   Y+ ++HGY     L + 
Sbjct: 300 GLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDV 359

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           + L   M+  G       +N LI     HG  D+A   F EM Q G+  DV++Y+T+I  
Sbjct: 360 RDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHI 419

Query: 419 YCKEGKI 425
            CK G++
Sbjct: 420 LCKTGRV 426



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 144/297 (48%), Gaps = 34/297 (11%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD-------LVWKLYHDLIESGY--- 204
           E+A   F +L       S+  +NS L    + D +        L   L++ ++ SG    
Sbjct: 31  EDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMM 90

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN--------F 250
                 LI+ FC  G++   +      L+ G   +N   N+LI   C+           F
Sbjct: 91  AAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQNVTLNQLIKGLCDGNRTDDAMDMVF 150

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGY--VPDTVMY 307
            R+ EL +T       PD F+Y  +I GLC  +K  EA  +   +  + GY   P+ V Y
Sbjct: 151 RRMPELGYT-------PDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSY 203

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            TVI G  K G +  A  ++ EM+ +GL P+  TYNS+I G C+   +++A  + + M D
Sbjct: 204 NTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFD 263

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           KG    T TYN +I G C  G+ +EA  L ++M+  G+  DV+TY+ LIQ YCK G+
Sbjct: 264 KGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGR 320



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 4/227 (1%)

Query: 205 LIQAFCNDGKVSEGYELL-RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           LI+  C+  +  +  +++ R++ E G  P+  ++N LI   C +K      ELL  M A 
Sbjct: 132 LIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTAD 191

Query: 264 ---NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
              N +P+  +Y  VI+G  K  +  +AY +F+++  +G  PD V Y ++I GLCK   +
Sbjct: 192 GGYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAM 251

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A  +   M  KG++P+  TYN MI GYC +  LEEA RL K+M   G     VTY+ L
Sbjct: 252 DKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLL 311

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           I   C  GR  EA  +F+ M +KG   +   Y+ L+ GY  +G +++
Sbjct: 312 IQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID 358



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/307 (26%), Positives = 141/307 (45%), Gaps = 29/307 (9%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +L++ R     +D +   G      +  + I    + G +++A  AF+++++ G      
Sbjct: 355 ALIDVRDL---LDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG------ 405

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
                               L  D++    +I   C  G+V +      Q++ +GL P  
Sbjct: 406 --------------------LRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNI 445

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            +F  LI   C    + +V EL   M+ R   PD      +++ LCK  + +EA   F+ 
Sbjct: 446 ISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDM 505

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G  PD V Y T+I G C +G + ++ K    M+  GL P+ +TYNS+++GY +   
Sbjct: 506 VIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGR 565

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +E+A  L++EM  K      +T N ++ GL   GR   A  L+ +M  +G    + TYNT
Sbjct: 566 VEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNT 625

Query: 415 LIQGYCK 421
           ++ G C+
Sbjct: 626 VLGGLCE 632



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 149/300 (49%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  S    I  LC++G +E+A   F+++   G+  +I ++ S + G   I     V
Sbjct: 405 GLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKV 464

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++I  G          ++   C +G+V E  +    V+  G+ P+  ++N LI  
Sbjct: 465 EELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDG 524

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C         + L  MV+    PD++TY  ++NG  K+ +  +A  ++ ++  +     
Sbjct: 525 YCFVGKMDESIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFC 584

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            +    ++HGL + G +  AR+++ +M+ +G      TYN+++ G C    ++EA R+ +
Sbjct: 585 AITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFE 644

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++  K +     T++ +I  L   GR DEA  LF  M  +G   DVITY+ +I+ + +EG
Sbjct: 645 DLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEG 704



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 139/333 (41%), Gaps = 22/333 (6%)

Query: 101 GFSPDLVSCNVLFDSL--------VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
           G SP+++S   L   L        VE  AF++      + G  P+   +   +  LC+ G
Sbjct: 440 GLSPNIISFTSLIHGLCSIGEWKKVEELAFEMI-----NRGIHPDAIFMNTIMDNLCKEG 494

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            + EA   F  +  +GV   + ++N+ + G   + + D   K    ++  G         
Sbjct: 495 RVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYN 554

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            L+  +  +G+V +   L R++    +       N ++    +        EL   MV R
Sbjct: 555 SLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDR 614

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
                  TY  V+ GLC++    EA R+F DL+ + +  D   ++ VI+ L K+G + +A
Sbjct: 615 GTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINALLKVGRIDEA 674

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           + ++  M+ +G +P+  TY+ MI  +     LEE+  L   M   G    +   N ++  
Sbjct: 675 KSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRR 734

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           L   G    A     ++ +K    +  T   LI
Sbjct: 735 LLEKGDVRRAGTYLTKIDEKNFSLEASTAALLI 767



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/319 (20%), Positives = 120/319 (37%), Gaps = 46/319 (14%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK---QQNNVLLSIRFFQWL 96
           +T +   +C I   K + E+     I      D +F    +    ++  V+ +  FF  +
Sbjct: 448 FTSLIHGLCSIGEWK-KVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMV 506

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
             H G  PD+VS N L D                                  C  G ++E
Sbjct: 507 -IHIGVKPDVVSYNTLIDG--------------------------------YCFVGKMDE 533

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQ 207
           +     ++  +G+     T+NS L G  K  R +    LY ++         I S  ++ 
Sbjct: 534 SIKQLDRMVSIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLH 593

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G++    EL  ++++ G       +N ++   CE         +   + ++    
Sbjct: 594 GLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFEL 653

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  VIN L K  +  EA  +F+ +  RG VPD + Y+ +I    + G L ++  ++
Sbjct: 654 DVRTFSIVINALLKVGRIDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLF 713

Query: 328 FEMIHKGLLPNEYTYNSMI 346
             M   G   + +  N ++
Sbjct: 714 LSMEKNGCAADSHMLNIIV 732


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/339 (29%), Positives = 162/339 (47%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++ N L   L      K A+ F D   + GF  +  S    I  LC+ G    A
Sbjct: 133 GYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTA 192

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDL-----VWKLYHDLIESGYLIQA 208
                K+    V  ++  +N+ +    K    ID  +L       K+  D++    LI  
Sbjct: 193 LQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYG 252

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++ E + L R+++   + P+   FN L+   C++ N      +L  M+     P+
Sbjct: 253 FCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPN 312

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G C   +  +A  V N + + G  P+   Y T+I+G CK+  + +A  ++ 
Sbjct: 313 VVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFN 372

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  KG+ P++ TYNS+I G C+   +  A  L  EM D G      TYN LI  LC + 
Sbjct: 373 DMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNH 432

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             D+A  L +++  +GI  D+ T+N LI G CK G++ N
Sbjct: 433 HVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKN 471



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 154/308 (50%), Gaps = 13/308 (4%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CI--K 185
           L+  G +P+  +  + I C C    +  AF   +K+ +MG      T+N+ + G C+  K
Sbjct: 94  LEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKGLCLNGK 153

Query: 186 IDRT----DLVWKL-YH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG-LVPENTA-F 237
           +       D V  L +H D    G LI   C  G+     ++LR++  DG LV  N   +
Sbjct: 154 VKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKI--DGKLVKINVVMY 211

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N +I   C+ K      EL   M+A+  +PD  T+  +I G C   +  EA+ +F ++  
Sbjct: 212 NTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVL 271

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +   PD   +  ++  LCK G L  A+ M   M+ +G++PN  TY+S++ GYC ++ + +
Sbjct: 272 KNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNK 331

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           AK +   +   G      +Y T+I G C     DEA  LF +M  KGI  D +TYN+LI 
Sbjct: 332 AKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLID 391

Query: 418 GYCKEGKI 425
           G CK G+I
Sbjct: 392 GLCKSGRI 399



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 168/347 (48%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           + LH H      GF  D  S   L + L +    + A+  L   D      N       I
Sbjct: 156 EALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKINVVMYNTII 215

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC+  L+ +A+  +S++    +   + T+++ + G   + + +  + L+ +++     
Sbjct: 216 DSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNIN 275

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+ A C +G +     +L  ++++G++P    ++ L+  +C      +   +
Sbjct: 276 PDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHV 335

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L+T+     AP+  +Y  +ING CK +   EA  +FND++ +G  PD V Y ++I GLCK
Sbjct: 336 LNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCK 395

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A ++  EM   G   N +TYN +I   C+  ++++A  L K++ D+G      T
Sbjct: 396 SGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYT 455

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +N LI GLC  GR   A  +F+++  KG   +  TYN ++ G CKEG
Sbjct: 456 FNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEG 502



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 159/326 (48%), Gaps = 12/326 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           ++V  N + DSL + +    A +    + +   SP+  +    I   C  G +EEAF  F
Sbjct: 207 NVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLF 266

Query: 162 SKLKEMGVFGSIKTWN---SALL--GCIKIDRTDLVWKLYH----DLIESGYLIQAFCND 212
            ++    +     T+N    AL   G +K  +  LV  +      +++    L+  +C  
Sbjct: 267 REMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLV 326

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            +V++   +L  + + G  P   ++  +I+ FC+ K       L + M  +  APD  TY
Sbjct: 327 NQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKVTY 386

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+GLCKS +   A+ + +++ + G   +   Y  +I  LCK   +  A  +  ++  
Sbjct: 387 NSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKD 446

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +G+ P+ YT+N +I+G C++  L+ A+ + +++L KGY     TYN ++ GLC  G  DE
Sbjct: 447 QGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDE 506

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQG 418
           A  L  +M   GI  D +TY TLIQ 
Sbjct: 507 AEALLSKMDDNGIIPDAVTYETLIQA 532



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 135/256 (52%), Gaps = 7/256 (2%)

Query: 169 VFGS-IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE 227
           + GS +K+ N+     I + R      +  D+     LI  +C+  +++  + ++ ++L+
Sbjct: 72  ILGSLVKSNNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILK 131

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLH---TMVARNRAPDNFTYEEVINGLCKSRK 284
            G  P+   FN LI   C     G+V E LH    ++A     D F+Y  +INGLCK  +
Sbjct: 132 MGYEPDTITFNTLIKGLCLN---GKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGE 188

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A ++   +  +    + VMY T+I  LCK   + DA +++ +MI K + P+  T+++
Sbjct: 189 TRTALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSA 248

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I+G+C +  LEEA  L +EM+ K       T+N L+  LC  G    A ++   M ++G
Sbjct: 249 LIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEG 308

Query: 405 IFRDVITYNTLIQGYC 420
           +  +V+TY++L+ GYC
Sbjct: 309 VMPNVVTYSSLMDGYC 324



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 147/320 (45%), Gaps = 16/320 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+ + L          + A            +P+  +  + +  LC+ G ++ A  
Sbjct: 240 SPDVVTFSALIYGFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKN 299

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
               + + GV  ++ T++S + G   +++ +    + + + + G          +I  FC
Sbjct: 300 MLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFC 359

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
               V E   L   +   G+ P+   +N LI   C+        EL+  M    +  + F
Sbjct: 360 KIKMVDEALSLFNDMQFKGIAPDKVTYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIF 419

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+ LCK+    +A  +   +K++G  PD   +  +I+GLCK+G L +A+ ++ ++
Sbjct: 420 TYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDL 479

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + KG   N +TYN M++G C+    +EA+ L  +M D G     VTY TLI  L      
Sbjct: 480 LSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDEN 539

Query: 391 DEAYHLFEEMAQKGIFRDVI 410
           ++A  L  EM    I RDV+
Sbjct: 540 EKAEKLLREM----IARDVV 555



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 111/223 (49%), Gaps = 2/223 (0%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G L+++  N+        L R++   G+ P+   FN LI+ +C          ++  ++ 
Sbjct: 74  GSLVKS--NNNHYPTAISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILK 131

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T+  +I GLC + K  EA    + +   G+  D   Y T+I+GLCK+G    
Sbjct: 132 MGYEPDTITFNTLIKGLCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRT 191

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +M  ++  K +  N   YN++I   C+   + +A  L+ +M+ K      VT++ LI 
Sbjct: 192 ALQMLRKIDGKLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIY 251

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C+ G+ +EA+ LF EM  K I  D  T+N L+   CKEG +
Sbjct: 252 GFCIVGQLEEAFGLFREMVLKNINPDYYTFNILVDALCKEGNL 294



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 15/199 (7%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL--EA 288
           VP N   + ++S F         + LL T            + +++  L KS       A
Sbjct: 41  VPSNIDVDNVVSSF---------NHLLRT----KPTSSIIEFNKILGSLVKSNNNHYPTA 87

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +   L+  G  PD   +  +I+  C M  +  A  M  +++  G  P+  T+N++I G
Sbjct: 88  ISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKG 147

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C    ++EA   H  +L  G+     +Y TLI GLC  G T  A  +  ++  K +  +
Sbjct: 148 LCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKIDGKLVKIN 207

Query: 409 VITYNTLIQGYCKEGKIVN 427
           V+ YNT+I   CK   +++
Sbjct: 208 VVMYNTIIDSLCKHKLVID 226


>gi|222615488|gb|EEE51620.1| hypothetical protein OsJ_32898 [Oryza sativa Japonica Group]
          Length = 822

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 159/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V  NVL D           +  L   ++ GF P   +    I CL + G +E+ 
Sbjct: 234 GCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKI 293

Query: 158 FCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKLY------HDLIESGYLIQA 208
              F ++++ G+  +++ +NS   AL  C    +  ++ K         D+I    LI  
Sbjct: 294 GSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITG 353

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C++G V +    LR+ +   L P   ++  LI  FC +      S+LL  M+ R   PD
Sbjct: 354 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPD 413

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+GL  + K  EA  V   + ER   PD  +Y  +I GLCK   L  A+ +  
Sbjct: 414 VVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILE 473

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ K + P+E+ Y ++I G+ R +NL +A+++ + M  KG     V+ N +I G C  G
Sbjct: 474 EMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFG 533

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA      M + G   D  TY T+I GY K+G +
Sbjct: 534 MMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNL 570



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 161/338 (47%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++   N + D+L +  +   AM  L    ++G  P+  +    I  LC  G + +A
Sbjct: 304 GLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 363

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIK---IDRTDLVWKLY-----HDLIESGYLIQA 208
                +     +  +  ++   + G C++   +  +DL+ ++       D++  G LI  
Sbjct: 364 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDLLMEMMGRGHTPDVVTFGALIHG 423

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               GKVSE   +  ++ E  + P+   +N LIS  C+K        +L  M+ +N  PD
Sbjct: 424 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPD 483

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F Y  +I+G  +S    +A ++F  ++ +G  PD V    +I G C+ G + +A     
Sbjct: 484 EFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEAILCMS 543

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G +P+E+TY ++I GY +  NL  A R   +M+ +      VTY++LI G C  G
Sbjct: 544 NMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTG 603

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            TD A  LF  M  + +  +V+TY  LI    K+ K++
Sbjct: 604 DTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVL 641



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 174/393 (44%), Gaps = 25/393 (6%)

Query: 53  TKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVL---LSIRFFQWLHS---HYGF-SPD 105
           T P W ++L + +PS     PL         +++    L++    W  S   H     P 
Sbjct: 43  TNPTWARSLAALLPS-----PLSDAHLAAAVSSLPDPDLAVALLSWSQSPDHHVALQDPT 97

Query: 106 LVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
            ++ + L   L  +R F    D L S    G +P    L   +    ++G++ +A     
Sbjct: 98  PLAHSTLLRLLARSRRFDAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATDMCE 157

Query: 163 KLKEM-GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI--ESG-------YLIQAFCND 212
           +L+E  G    +   N  L   ++  R D   KLY +++  +SG        L++  C +
Sbjct: 158 RLREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGEDSGADNYSTCVLVRGLCLE 217

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G+V EG +L+      G +P    +N LI  +C + + GR   LL  M A+   P   TY
Sbjct: 218 GRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTY 277

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +IN L K     +   +F ++++RG  P+  +Y +VI  LCK      A  +  +M  
Sbjct: 278 GSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQMFA 337

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G  P+  T+N++I G C   ++ +A+   +E + +      ++Y  LI G C+ G    
Sbjct: 338 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMA 397

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A  L  EM  +G   DV+T+  LI G    GK+
Sbjct: 398 ASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKV 430



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 151/355 (42%), Gaps = 29/355 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+   L   LV A     A+   + +      P+ N   + I  LC+  ++  A
Sbjct: 409 GHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKHMLPAA 468

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ E  V      + + + G I+ +      K++          D++    +I+ 
Sbjct: 469 KNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRPDIVSCNAMIKG 528

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G +SE    +  + + G +P+   +  +IS + ++ N       L  M+ R   P+
Sbjct: 529 YCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPN 588

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING CK+     A  +F +++     P+ V YT +I  L K   +  A   + 
Sbjct: 589 VVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFE 648

Query: 329 EMIHKGLLPNEYTYNSMIHGY-----CRIDNLE-EAKRLH----------KEMLDKGYGE 372
            M+     PN+ T + +++G      C I+++      +H          K + D G   
Sbjct: 649 TMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPR 708

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +  YN +I  LC H    EA      MA+KG   + IT+ +L+ G+C  GK +N
Sbjct: 709 NS-AYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSMN 762


>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
          Length = 871

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/413 (27%), Positives = 177/413 (42%), Gaps = 88/413 (21%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+ N+L ++        VA+D+L     +G  P+  +    +  LC  G + EA  
Sbjct: 279 SPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARK 338

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIK-----------------------IDRTDLVW--- 193
            F  +++MG+  +   +N+ + G  K                       +    LVW   
Sbjct: 339 LFDGIQDMGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHY 398

Query: 194 ---------KLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
                    +L  DLI SG          ++ + C  G++ E  +LL+++LE GL     
Sbjct: 399 KYGRIEDSDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVV 458

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAYR- 290
           AFN LI  +       +  E    MV     P + T   ++ GLC+       R+  YR 
Sbjct: 459 AFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRM 518

Query: 291 ------------------------------VFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
                                         ++ ++KERG  PD V +T +I GL K G +
Sbjct: 519 LEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNV 578

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A +++ EM   G +PN + YNS+I G C    + EA +L KEM  KG    T T+N +
Sbjct: 579 EEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNII 638

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK------EGKIVN 427
           I G C  G+   A   F +M + G+  D+ T+N LI GYCK       G+IVN
Sbjct: 639 IDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVN 691



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 165/339 (48%), Gaps = 21/339 (6%)

Query: 101 GFSPDLVSCNVLFDSL----VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +  +V+ N L  +     +E +AF+ A   +   GF+P+ ++    +  LC  G ++E
Sbjct: 452 GLTLSVVAFNSLIGAYSRAGLEDKAFE-AYRIMVRCGFTPSSSTCNSLLMGLCRKGWLQE 510

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---LVWK------LYHDLIESGYLIQ 207
           A     ++ E G   +   +   L G  K++  +    +WK      +Y D +    LI 
Sbjct: 511 ARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALID 570

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT---MVARN 264
                G V E YE+  ++   G VP N A+N LI   C+    GRV+E L     M  + 
Sbjct: 571 GLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCD---CGRVTEALKLEKEMRQKG 627

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D FT+  +I+G C+  +   A   F D++  G +PD   +  +I G CK   +  A 
Sbjct: 628 LLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAG 687

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +M   GL P+  TYN+ +HGYCR+  + +A  +  +++  G    TVTYNT+++G+
Sbjct: 688 EIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGI 747

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C     D A  L  ++ + G   +VIT N L+  +CK+G
Sbjct: 748 C-SDILDRAMILTAKLLKMGFIPNVITTNMLLSHFCKQG 785



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 26/344 (7%)

Query: 101 GFSPDLVSCNVLF----------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           G SPD V+ N+L           DS    +   V+  FLDS+ +       ++ +  LC 
Sbjct: 382 GVSPDCVTFNILVWGHYKYGRIEDSDRLLKDLIVSGLFLDSSLY-------DVMVSSLCW 434

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
           +G ++EA     +L E G+  S+  +NS +    +    D  ++ Y  ++  G+      
Sbjct: 435 AGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKAFEAYRIMVRCGFTPSSST 494

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L+   C  G + E   LL ++LE G      A+  L+  + +  N      L   M 
Sbjct: 495 CNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLDGYFKMNNLEGAQFLWKEMK 554

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            R   PD   +  +I+GL K+    EAY VF ++   G+VP+   Y ++I GLC  G + 
Sbjct: 555 ERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVT 614

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A K+  EM  KGLL + +T+N +I G+CR   ++ A     +M   G      T+N LI
Sbjct: 615 EALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTFNILI 674

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G C       A  +  +M   G+  D+ TYNT + GYC+  K+
Sbjct: 675 GGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKM 718



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 153/335 (45%), Gaps = 19/335 (5%)

Query: 101 GFSPDLVSCNVLFDSLV------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           GF+P   +CN L   L       EAR     M      GF  N  +  + +    +   +
Sbjct: 487 GFTPSSSTCNSLLMGLCRKGWLQEARILLYRML---EKGFPINKVAYTVLLDGYFKMNNL 543

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           E A   + ++KE G++     + + + G  K    +  ++++ ++   G+         L
Sbjct: 544 EGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSL 603

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+  C+ G+V+E  +L +++ + GL+ +   FN +I  FC +       E    M     
Sbjct: 604 IRGLCDCGRVTEALKLEKEMRQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGL 663

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FT+  +I G CK+   + A  + N +   G  PD   Y T +HG C+M  +  A  
Sbjct: 664 LPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHGYCRMRKMNQAVI 723

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  ++I  G++P+  TYN+M+ G C  D L+ A  L  ++L  G+    +T N L++  C
Sbjct: 724 ILDQLISAGIVPDTVTYNTMLSGICS-DILDRAMILTAKLLKMGFIPNVITTNMLLSHFC 782

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             G  ++A    +++ +     D I+Y  L Q YC
Sbjct: 783 KQGMPEKALIWGQKLREISFGFDEISYRILDQAYC 817



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/213 (27%), Positives = 104/213 (48%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G     ++L + ++  G  P N  FN +I  FC +        LLH M     +PD  T+
Sbjct: 226 GDYGSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTF 285

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +IN  C   +   A    + +   G  P    +TT++H LC+ G + +ARK++  +  
Sbjct: 286 NILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQD 345

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G+ PN   YN+++ GY +   + +A  L++EM   G     VT+N L+ G   +GR ++
Sbjct: 346 MGIAPNAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIED 405

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  L +++   G+F D   Y+ ++   C  G++
Sbjct: 406 SDRLLKDLIVSGLFLDSSLYDVMVSSLCWAGRL 438



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 124/276 (44%), Gaps = 44/276 (15%)

Query: 192 VWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           VWKL+ D+I  G          +I  FC   +V  G  LL  + +    P+   FN LI+
Sbjct: 231 VWKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVVVGESLLHLMPKFMCSPDVVTFNILIN 290

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C         + LH MV     P   T+  +++ LC+    +EA ++F+ +++ G  P
Sbjct: 291 ACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTILHALCREGNVVEARKLFDGIQDMGIAP 350

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           +  +Y T++ G  K   +  A  ++ EM   G+ P+  T+N ++ G+ +   +E++ RL 
Sbjct: 351 NAAIYNTLMDGYFKAREVAQASLLYEEMRTTGVSPDCVTFNILVWGHYKYGRIEDSDRLL 410

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI------ 416
           K+++  G    +  Y+ +++ LC  GR DEA  L +E+ +KG+   V+ +N+LI      
Sbjct: 411 KDLIVSGLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRA 470

Query: 417 -----------------------------QGYCKEG 423
                                         G C++G
Sbjct: 471 GLEDKAFEAYRIMVRCGFTPSSSTCNSLLMGLCRKG 506



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 140/318 (44%), Gaps = 35/318 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD V+   L D L +A     A++V ++ + + GF PN  +    I+ LC+ G + E
Sbjct: 557 GIYPDAVAFTALIDGLSKAGNVEEAYEVFLE-MSAIGFVPNNFAYNSLIRGLCDCGRVTE 615

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     ++++ G+     T+N                           +I  FC  G++ 
Sbjct: 616 ALKLEKEMRQKGLLSDTFTFN--------------------------IIIDGFCRRGQMK 649

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
              E    +   GL+P+   FN LI  +C+  +     E+++ M +    PD  TY   +
Sbjct: 650 FAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYM 709

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G C+ RK  +A  + + L   G VPDTV Y T++ G+C    L  A  +  +++  G +
Sbjct: 710 HGYCRMRKMNQAVIILDQLISAGIVPDTVTYNTMLSGICS-DILDRAMILTAKLLKMGFI 768

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN  T N ++  +C+    E+A    +++ +  +G   ++Y  L    CL     +   L
Sbjct: 769 PNVITTNMLLSHFCKQGMPEKALIWGQKLREISFGFDEISYRILDQAYCL---MQDDVEL 825

Query: 397 FEEMAQKGIFRDVITYNT 414
                +K +F D + Y T
Sbjct: 826 VRGTYEKHLFMDFLMYIT 843



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 4/190 (2%)

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           ++S    +   GR ++++  M  RN A    D      ++ G        EA  V   ++
Sbjct: 146 VVSWLIARVGTGRTNKIVDFM-WRNHAMYESDFSVLNTLLRGFLNVGMGFEALEVLRMMR 204

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  P     T ++  L ++G  G   K++ +MI KG  P+  T+N+MI G+CR   + 
Sbjct: 205 GVGVRPGLSSITILLRLLLRIGDYGSVWKLFKDMIFKGPRPSNLTFNAMICGFCRQHRVV 264

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
             + L   M         VT+N LI   C+ GRT  A      M + G+   V T+ T++
Sbjct: 265 VGESLLHLMPKFMCSPDVVTFNILINACCIGGRTWVAIDWLHLMVRSGVEPSVATFTTIL 324

Query: 417 QGYCKEGKIV 426
              C+EG +V
Sbjct: 325 HALCREGNVV 334


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 164/329 (49%), Gaps = 20/329 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F +J+E +  +++ D    +G           I    ESG + +A   +   KE 
Sbjct: 47  SASAVFAAJLETKGTQIS-DIYVFSGL----------ITAYLESGFLRDAIECYRLTKEH 95

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
                  T    J   +K+    LVW  Y + +E GY         L+ +F  +G++   
Sbjct: 96  KFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLA 155

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +   + + GL P   +FN L++ + +  +      L + M A    PD +TY  +ING
Sbjct: 156 QSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLING 215

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A  +F+++ + G VP+ V +TT+I G CK G +  A +++ +M+ + L P+
Sbjct: 216 LCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+  +L++A+ L  EM  KG     +TY TLI G C  G  + A+   +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRK 335

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 152/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVJEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 154/310 (49%), Gaps = 12/310 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD+ + N++ D L++     +A+     +      PN  +  + I  LC+SG +++A  
Sbjct: 158 TPDVYTYNMILDVLIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALH 217

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F ++ + G+     T+   + G  +  R D  ++L+  + +SG          L+  FC
Sbjct: 218 LFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFC 277

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              +V E + LLR   +DG V +   ++ LI      K +  V  L   M+  N  PD +
Sbjct: 278 MLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVY 337

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  ++ GL ++ K  +A  + N++ E G VPDTV Y  +I G C MG L +AR +  E+
Sbjct: 338 LYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEI 397

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
                 PN  TY+ +I G CR     +A+ +  EM   G   + VT+N+LI GLC  G+ 
Sbjct: 398 SRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQL 457

Query: 391 DEAYHLFEEM 400
           ++A+ LF +M
Sbjct: 458 EKAHLLFYKM 467



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 108/439 (24%), Positives = 184/439 (41%), Gaps = 96/439 (21%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GF 134
           + L Q+N +LL++  +  +       P++ + ++L D L ++   K A+   D     G 
Sbjct: 169 DVLIQKNFLLLALTVYTRMMK-LNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGI 227

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            P+  +  + I  LC S  +++A+  F K+K+ GV     T N+ L G   +DR D  + 
Sbjct: 228 LPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFS 287

Query: 195 LYHDLIESGY--------------------------------------------LIQAFC 210
           L     + GY                                            +++   
Sbjct: 288 LLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLA 347

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GKV +  ELL ++ E G+VP+   +N LI  FC+         L   +   +  P+  
Sbjct: 348 EAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVK 407

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+G+C++    +A  +FN++++ G  P  V + ++I GLCK G L  A  ++++M
Sbjct: 408 TYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKM 467

Query: 331 -------------------------------------IHK-----------GLLPNEYTY 342
                                                IHK           G  P  YTY
Sbjct: 468 EIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTY 527

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N +++G+C++ N   A +L +EM  KG    TVTY TLI GL    R ++AY +F++M +
Sbjct: 528 NILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEK 587

Query: 403 KGIFRDVITYNTLIQGYCK 421
            G   D   Y T++   C+
Sbjct: 588 NGCTPDAAVYRTMMTWMCR 606



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/456 (23%), Positives = 192/456 (42%), Gaps = 54/456 (11%)

Query: 17  RNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFF 76
           R+F +P       S+ T   Q+  T I+ +V  + +T    E  L   +P   F  P   
Sbjct: 9   RHFSHPKPPWVQ-SLHTSAIQE--TSISDEVFTVIKTMNPMEPALEPMVP---FLSPKIV 62

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV---AMDFLDSTG 133
              ++   N  L  RFF W  +   F     SC+++ D L+     ++    ++ L + G
Sbjct: 63  TSIIQNPPNPQLGFRFFIWASNFKRFRA-WESCDLITDLLINQNGLELYCQTLEALKNGG 121

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
              + ++  + I+   + GL ++A   F  +++      + T+N  L   I+ +   L  
Sbjct: 122 IKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLAL 181

Query: 194 KLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            +Y  +++            LI   C  G V +   L  ++ + G++P+   +  +IS  
Sbjct: 182 TVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGL 241

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--- 301
           C  K       L   M      PD  T   ++NG C   +  EA+ +    ++ GYV   
Sbjct: 242 CRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDV 301

Query: 302 --------------------------------PDTVMYTTVIHGLCKMGWLGDARKMWFE 329
                                           PD  +YT ++ GL + G + DA ++  E
Sbjct: 302 RGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNE 361

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G++P+   YN +I G+C +  L EA+ L  E+          TY+ LI+G+C +G 
Sbjct: 362 MTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGL 421

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T +A  +F EM + G +   +T+N+LI G CK G++
Sbjct: 422 TRDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQL 457



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 148/325 (45%), Gaps = 32/325 (9%)

Query: 101 GFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD V  NVL         L EAR+ ++ +   D     PN  +  + I  +C +GL 
Sbjct: 366 GVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCF---PNVKTYSILISGMCRNGLT 422

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL--------------- 199
            +A   F++++++G + S  T+NS + G  K  + +    L++ +               
Sbjct: 423 RDAQEIFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQG 482

Query: 200 ----IESGYL---IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
               ++S  L   ++  C+ G + + Y +L Q+ + G  P    +N L++ FC+  NF  
Sbjct: 483 PSHVLDSASLQKMVEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNG 542

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +L   M  +  +PD  TY  +INGL + ++  +AY+VF+ +++ G  PD  +Y T++ 
Sbjct: 543 AYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMT 602

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            +C+   L  A  +W + + + +   E      I GY     +E+A R   EM  K    
Sbjct: 603 WMCRRMELPRAFSLWLKYL-RNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDF 661

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLF 397
               Y   + GLC   R  EA  +F
Sbjct: 662 DLGPYAIWLIGLCQTRRVGEALKIF 686



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 65/310 (20%), Positives = 115/310 (37%), Gaps = 59/310 (19%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN----------------SLELY 144
           G  P  V+ N L D L +    + A           NP+                SL+  
Sbjct: 436 GCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKM 495

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------- 197
           ++ LC+SGLI +A+    +L + G    I T+N  + G  K+   +  +KL+        
Sbjct: 496 VEQLCDSGLIHKAYRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGL 555

Query: 198 --DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D +  G LI       +  + Y++  Q+ ++G  P+   +  +++  C +    R   
Sbjct: 556 SPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFS 615

Query: 256 LLHTMVARNRAPDN---------FTYEEV-------------------------INGLCK 281
           L    +   R+ ++         F  +EV                         + GLC+
Sbjct: 616 LWLKYLRNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQ 675

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
           +R+  EA ++F  L+E   V        +I+ L K G L  A  ++   I KG L     
Sbjct: 676 TRRVGEALKIFLILEEYKVVITPPCCVKLIYFLLKEGDLDRAIDVFLYTIEKGYLLRRRV 735

Query: 342 YNSMIHGYCR 351
            N ++    R
Sbjct: 736 ANRILTKLVR 745


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   ++  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 54  ITAYLESGFLRDAIECYXLTRKHKLWVPFDTCRKVLEYLMKLKYFKLVWGFYEEILECGY 113

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +           
Sbjct: 114 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 173

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+A    PD +TY  +INGLCK  K  +A  +F+++  +G VP+ V +TT+I G C
Sbjct: 174 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHC 233

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  +M  KG     +
Sbjct: 234 KNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKGLKPDKI 293

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G    A+   + + Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 294 TYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVD 345



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 153/323 (47%), Gaps = 12/323 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F  +
Sbjct: 84  TCRKVLEYLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAI 143

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S  ++N+ + G I++   D  ++L   ++ SG          LI   C + K+
Sbjct: 144 TKWGLRPSAVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKM 203

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  ++L  GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 204 DDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTL 263

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +D+  +G  PD + YTT+I G CK G L  A +    +I + +
Sbjct: 264 IYGLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENI 323

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G   +   
Sbjct: 324 RLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSK 383

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           L +EM + G    V+TYN L+ G
Sbjct: 384 LLKEMQRDGHVPSVVTYNVLMNG 406


>gi|297741630|emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 146/281 (51%), Gaps = 9/281 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I C C SG ++ A   F ++ + G+  S  T+ + + G  K  + +    L +++   G 
Sbjct: 341 ISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGI 400

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  +C  G V E   L   + + GL  +  A+N + S  C+         
Sbjct: 401 DLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKG 460

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL +MV R  +P+  ++  +I+  CK    +EA RVF +++E+G VP+ + Y  +I G  
Sbjct: 461 LLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 520

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + +A K+  E+ ++GL+P+ YT  S+IHG C    ++ A +L  EM  +G     V
Sbjct: 521 KRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 580

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           TY  +I+GL   GR++EA+ L++EM + G+  D   Y++L+
Sbjct: 581 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 621



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 9/308 (2%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +  ++  G + N  +  L I      G IEEA   F +++E G+   +  + S +    +
Sbjct: 287 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCR 346

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                    L+ ++ + G          LI   C  G++     L+ ++   G+      
Sbjct: 347 SGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVI 406

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FN LI  +CE         L   M  +    D F Y  + +GLCK  ++ EA  +   + 
Sbjct: 407 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 466

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           ERG  P+T+ +TT+I   CK G   +A++++ EM  KG +PN  TYN +I GY +  N++
Sbjct: 467 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMK 526

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA +L  E+ ++G      T  +LI G C+ G+ D A  LF+EM Q+G+  +V+TY  +I
Sbjct: 527 EAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMI 586

Query: 417 QGYCKEGK 424
            G  K+G+
Sbjct: 587 SGLSKDGR 594



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 13/297 (4%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL-----VWK 194
           SL + +  LC+ G +E       ++   GV  ++ T+N+ + G  K  R DL     +  
Sbjct: 231 SLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK--RLDLGGVAEILT 288

Query: 195 LYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           L        +++    LI  F N GK+ E   L  ++ E G+  +   +  +IS  C   
Sbjct: 289 LMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSG 348

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           N  R   L   M  +   P   TY  +I+G+CK+ +   A  + N+++ +G   + V++ 
Sbjct: 349 NVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFN 408

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I G C+ G + +A ++   M  KGL  + + YNS+  G C+++  +EAK L   M+++
Sbjct: 409 TLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVER 468

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G    T+++ TLI   C  G   EA  +F EM +KG   ++ITYN LI GY K G +
Sbjct: 469 GVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNM 525



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 119/257 (46%), Gaps = 35/257 (13%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++   C  G V  G +L+ +V   G+      +N  I  + ++ + G V+E+L  M    
Sbjct: 235 VLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEG 294

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            A +  TY  +I+G     K  EA R+F +++E+G   D  +YT++I   C+ G +  A 
Sbjct: 295 VACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRAL 354

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ EM  KGL+P+ +TY ++IHG C+   +E A+ L  EM  KG     V +NTLI G 
Sbjct: 355 VLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGY 414

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYN------------------------------- 413
           C  G  DEA  L   M +KG+  DV  YN                               
Sbjct: 415 CESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNT 474

Query: 414 ----TLIQGYCKEGKIV 426
               TLI  YCKEG  V
Sbjct: 475 MSFTTLIDIYCKEGNFV 491



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 30/306 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNP 138
           +  NV  ++  F  + +  G  P   +   L   + +A    A ++ ++ +   G   NP
Sbjct: 346 RSGNVKRALVLFDEM-TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNP 404

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
                 I   CESG+++EA      +++ G+   +  +NS   G  K++R D        
Sbjct: 405 VIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKD-------- 456

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                             E   LL  ++E G+ P   +F  LI  +C++ NF     +  
Sbjct: 457 ------------------EAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFR 498

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +   P+  TY  +I+G  K     EA+++ ++L+ RG +PD    T++IHG C  G
Sbjct: 499 EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDG 558

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A K++ EM  +GL+PN  TY +MI G  +    EEA +L+ EM + G       Y+
Sbjct: 559 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYS 618

Query: 379 TLIAGL 384
           +L+  L
Sbjct: 619 SLVGSL 624



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 35/174 (20%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA   F  ++++G+  D       +  L + G +    + +  M++  +    Y+   ++
Sbjct: 177 EALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVL 236

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG----------------------- 383
            G C+  ++E  ++L  E+  KG     VTYN  I G                       
Sbjct: 237 DGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVA 296

Query: 384 -------LCLH-----GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                  L +H     G+ +EA  LFEEM +KGI  DV  Y ++I   C+ G +
Sbjct: 297 CNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNV 350



 Score = 44.7 bits (104), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%)

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
             G+A + +  M  KG   +E +    +    R   ++   R  + M++     T  +  
Sbjct: 174 MFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLT 233

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            ++ GLC  G  +    L +E+A KG+  +V+TYN  I+GY K
Sbjct: 234 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 276


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 155/327 (47%), Gaps = 12/327 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +++  +L ++ +      VAM  LD   S G  P+  +    I+ +C+  ++++AF  
Sbjct: 206 PTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFEL 265

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              L   G    I T+N  L   +   +     KL  ++I  G          LI   C 
Sbjct: 266 LRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCR 325

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGKV E   LLR + E GL P+   ++ LI+ FC +      +E L  M++    PD   
Sbjct: 326 DGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVN 385

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++ GLC++ K  +A  VF  L E G  P+   Y T+   L   G    A +M  +++
Sbjct: 386 YNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLL 445

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           ++G+ P+E TYNS+I   CR   ++EA  L  +M    Y    V+YN ++ GLC   R +
Sbjct: 446 NQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRAN 505

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +A  +   M +KG   +  TY  LI+G
Sbjct: 506 DAIEVLAAMTEKGCQPNETTYILLIEG 532



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 159/335 (47%), Gaps = 13/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G++PD++ C  L      +R    A   M+ L+  G  P+  +    I    ++  +E A
Sbjct: 99  GYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG-KPDVFAYNALISGFIKANQLENA 157

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++K  G    + T+N  +       + DL  +++ +L++            LI+A
Sbjct: 158 NRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEA 217

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              DG +    +LL ++L  GL P+   +N +I   C++    +  ELL ++ +R   PD
Sbjct: 218 TILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPD 277

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++  L    K  E  ++ +++   G  P+ V ++ +I  LC+ G + +A  +  
Sbjct: 278 IITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLR 337

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KGL P+ Y Y+ +I G+CR   L+ A    + M+  G     V YNT++AGLC  G
Sbjct: 338 SMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTG 397

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + D+A  +FE++ + G   +V +YNTL       G
Sbjct: 398 KADQALEVFEKLDEVGCPPNVSSYNTLFSALWSSG 432



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 168/385 (43%), Gaps = 51/385 (13%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSL 141
           N+  + R  + L   YG  PD+ + N L    ++A   + A   +D + S GF P+  + 
Sbjct: 119 NIGKATRVMEILE-RYG-KPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTY 176

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + I   C  G ++ A   F +L +     ++ T+   +   I     D+  KL  +++ 
Sbjct: 177 NIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLS 236

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          +I+  C +  V + +ELLR +   G  P+   +N L+     +  +  
Sbjct: 237 KGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSE 296

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +L+  M++    P+  T+  +I  LC+  K  EA  +   +KE+G  PD   Y  +I 
Sbjct: 297 GEKLISEMISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIA 356

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM------- 365
           G C+ G L  A +    MI  G LP+   YN+++ G CR    ++A  + +++       
Sbjct: 357 GFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPP 416

Query: 366 ----------------------------LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
                                       L++G     +TYN+LI+ LC  G  DEA  L 
Sbjct: 417 NVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELL 476

Query: 398 EEMAQKGIFR-DVITYNTLIQGYCK 421
            +M Q G +R +V++YN ++ G CK
Sbjct: 477 VDM-QSGRYRPNVVSYNIILLGLCK 500



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 1/220 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+   C  GK +E    L  +++ G  P+     KLI  F   +N G+ + ++  ++ R 
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVME-ILERY 133

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD F Y  +I+G  K+ +   A RV + +K RG++PD V Y  +I   C  G L  A 
Sbjct: 134 GKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLAL 193

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ E++     P   TY  +I        ++ A +L  EML KG    T+TYN +I G+
Sbjct: 194 EIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGM 253

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           C     D+A+ L   ++ +G   D+ITYN L++     GK
Sbjct: 254 CKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGK 293



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/184 (34%), Positives = 88/184 (47%), Gaps = 1/184 (0%)

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           KL++R C    +      L  MV +   PD     ++I G   SR   +A RV   L+  
Sbjct: 74  KLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERY 133

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  PD   Y  +I G  K   L +A ++   M  +G LP+  TYN MI  +C    L+ A
Sbjct: 134 GK-PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLA 192

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             + +E+L      T +TY  LI    L G  D A  L +EM  KG+  D +TYN +I+G
Sbjct: 193 LEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRG 252

Query: 419 YCKE 422
            CKE
Sbjct: 253 MCKE 256



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 84/162 (51%), Gaps = 6/162 (3%)

Query: 269 NFTYEEV-----INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +F ++EV     +N  C++ K  E+      + ++GY PD ++ T +I G      +G A
Sbjct: 64  SFDFKEVHLMKLLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKA 123

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  E++ +   P+ + YN++I G+ + + LE A R+   M  +G+    VTYN +I  
Sbjct: 124 TRV-MEILERYGKPDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGS 182

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  G+ D A  +FEE+ +      VITY  LI+    +G I
Sbjct: 183 FCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGI 224



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 12/207 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD    + L           +A +FL+   S G  P+  +    +  LC +G  ++A
Sbjct: 343 GLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQA 402

Query: 158 FCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRT-DLVWKLYH-----DLIESGYLIQA 208
              F KL E+G   ++ ++N   SAL       R  +++ KL +     D I    LI  
Sbjct: 403 LEVFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISC 462

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG V E  ELL  +      P   ++N ++   C+        E+L  M  +   P+
Sbjct: 463 LCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPN 522

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDL 295
             TY  +I G+  S  R EA  + N L
Sbjct: 523 ETTYILLIEGIGFSGLRAEAMELANSL 549


>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 544

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/330 (30%), Positives = 154/330 (46%), Gaps = 14/330 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
            F+   S YG  P++ +CN+L  +L +    + A+  LD   + G  PN  +    +   
Sbjct: 187 MFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGY 246

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
              G +  A   F +L + G      T+   + G  +  R     KL  D+ E+G     
Sbjct: 247 SSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGENGVEPNE 306

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +++A+C + K  E   LL  +LE   VP +    K+I   CE        EL   
Sbjct: 307 VTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKR 366

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+ +N  PDN     +I+ LCK  K  EA ++F +  ERG +P  + Y T+I G+C+ G 
Sbjct: 367 MLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGEF-ERGAIPSLLTYNTLIAGMCEKGE 425

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L +A K+W +M+ KG  PN +TYN +I G+ +I N +E  R+ +EMLD        TY  
Sbjct: 426 LSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKEGIRILEEMLDNRCMPNKSTYAI 485

Query: 380 LIAGLCLHGRTDEAYHLFE-EMAQKGIFRD 408
           LI  LC  G   E   +    MA  G+  D
Sbjct: 486 LIEELCKMGMEGEVDKVVSMAMASGGVDSD 515



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 165/331 (49%), Gaps = 18/331 (5%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           S N L ++ V+ + + +      +     G  PN  +  + I+ LC+   +E A     +
Sbjct: 167 SLNTLLNAFVQNKRYDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDE 226

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVW--KLYHDLIESGYLIQA---------FCND 212
           +  MG+  ++ T+ + L G     R D+V   K++ +L + G+L  A         +C  
Sbjct: 227 MPAMGMIPNVVTYTTILGG--YSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQ 284

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G++++  +L+  + E+G+ P    +  ++  +C++K  G    LL  M+ R   P +   
Sbjct: 285 GRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALC 344

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
            +VI+ LC++ K  EA  ++  + ++  +PD  + +T+IH LCK G + +ARK++ E   
Sbjct: 345 CKVIDVLCEAGKIEEACELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGE-FE 403

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           +G +P+  TYN++I G C    L EA +L  +M++KGY     TYN LI G    G   E
Sbjct: 404 RGAIPSLLTYNTLIAGMCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIGNAKE 463

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              + EEM       +  TY  LI+  CK G
Sbjct: 464 GIRILEEMLDNRCMPNKSTYAILIEELCKMG 494



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/400 (23%), Positives = 177/400 (44%), Gaps = 50/400 (12%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHY-GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           P      + +Q N+ L+++ F++   +   FS +  + + +   L  AR F      L  
Sbjct: 61  PKRLVSMITRQQNLDLALQIFEYAGKYQPNFSHNYDTYDSIIHKLSRARVFGPVELLLSD 120

Query: 132 TGFSPNPNSLELYIQCLCESGLIEE---AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
              S       ++I  +   GL  +   A   F ++++  V  S+++ N+ L   ++  R
Sbjct: 121 LHKSQIKCGENIFINVIRNYGLAGKPDFALRTFIRIQDFNVQRSVRSLNTLLNAFVQNKR 180

Query: 189 TDLVWKLYHD----------LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
            DLV  ++ +          +     LI+A C    V    ++L ++   G++P    + 
Sbjct: 181 YDLVHAMFKNCRSKYGVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYT 240

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING-------------------- 278
            ++  +  + +    +++   +  R   PD  TY  ++NG                    
Sbjct: 241 TILGGYSSRGDMVNANKVFGELFDRGWLPDATTYTILMNGYCEQGRLADAIKLMDDMGEN 300

Query: 279 ---------------LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
                           CK +K  EA  + +D+ ER YVP + +   VI  LC+ G + +A
Sbjct: 301 GVEPNEVTYGVMVEAYCKEKKAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEA 360

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++W  M+ K  +P+    +++IH  C+   + EA++L  E  ++G   + +TYNTLIAG
Sbjct: 361 CELWKRMLKKNCMPDNAIMSTLIHWLCKEGKVWEARKLFGE-FERGAIPSLLTYNTLIAG 419

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +C  G   EA  L+++M +KG   +  TYN LI+G+ K G
Sbjct: 420 MCEKGELSEAGKLWDDMMEKGYKPNAFTYNMLIKGFSKIG 459



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 51/94 (54%)

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G+LPN +T N +I   C+ +++E A ++  EM   G     VTY T++ G    G    A
Sbjct: 196 GVLPNVFTCNILIKALCKKNDVESAVKVLDEMPAMGMIPNVVTYTTILGGYSSRGDMVNA 255

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             +F E+  +G   D  TY  L+ GYC++G++ +
Sbjct: 256 NKVFGELFDRGWLPDATTYTILMNGYCEQGRLAD 289


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+V+ N L +          A+  +D     G+ P+  +    I  L       EA
Sbjct: 143 GYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEA 202

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGYLI-----QA 208
                ++ + G    + T+ + + G  K   TDL   L + +    IE+  +I      +
Sbjct: 203 VALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDS 262

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C      +   L  ++   G+ P    ++ LIS  C    +   S LL  M+ R   P+
Sbjct: 263 LCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPN 322

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+   K  K ++A +++ ++ +R   P+   Y+++I+G C +  LG+A++M  
Sbjct: 323 LVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLE 382

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI K  LPN  TYN++I+G+C+   +++   L +EM  +G    TVTY TLI G     
Sbjct: 383 LMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQAR 442

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  +F++M   G+  +++TYN L+ G CK GK+
Sbjct: 443 DCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKL 479



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 163/336 (48%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+   L   L    +A      +D +   G  P+  +    +  LC+ G  + A
Sbjct: 178 GYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLA 237

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +K++   +  ++  +++ +    K    D    L+ ++   G          LI  
Sbjct: 238 LNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISC 297

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G+ S+   LL  ++E  + P    F+ LI  F +K    +  +L   M+ R+  P+
Sbjct: 298 LCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPN 357

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +ING C   +  EA ++   +  +  +P+ V Y T+I+G CK   +    +++ 
Sbjct: 358 IFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFR 417

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL+ N  TY ++IHG+ +  + + A+ + K+M+  G     +TYN L+ GLC +G
Sbjct: 418 EMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNG 477

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +  +A  +FE + +  +  D+ TYN +I+G CK GK
Sbjct: 478 KLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 139/282 (49%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK---------LYHDLIESGY 204
           +++A   F  + +   F SI  ++  L    K+++ DLV           + H+L     
Sbjct: 59  LDDAIGLFGVMAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNI 118

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  FC   ++S    LL ++++ G  P+    N L++ FC          L+  MV   
Sbjct: 119 LINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMG 178

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +I+GL    K  EA  + + + +RG  PD V Y  V++GLCK G    A 
Sbjct: 179 YKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRGDTDLAL 238

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  N   Y+++I   C+  + ++A  L  EM +KG     +TY++LI+ L
Sbjct: 239 NLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCL 298

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L  +M ++ I  +++T++ LI  + K+GK+V
Sbjct: 299 CNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLV 340


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 143/289 (49%), Gaps = 17/289 (5%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +    +  LC+ GL+ E+     K+ + GV  ++ T+N  + G             
Sbjct: 214 PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQG------------- 260

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
              L   G L +A  N  +V E  E LR+++  G  P++  +N +I  +C+K      + 
Sbjct: 261 ---LCREGALDRAVRN-SRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANR 316

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +L   V +   PD FTY  +ING CK      A  VF D   +G  P  V+Y T+I GL 
Sbjct: 317 VLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLS 376

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           + G +  A ++  EM   G LPN +TYN +I+G C++  + +A  L  + + KG      
Sbjct: 377 QQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIF 436

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TYNTLI G C   + D A  +   M  +G+  DVITYNTL+ G CK GK
Sbjct: 437 TYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGK 485



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 152/343 (44%), Gaps = 21/343 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE----- 155
           PD+V+ N L   L +      +   L      G  PN  +  +++Q LC  G ++     
Sbjct: 214 PDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVRN 273

Query: 156 ----EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
               EA     K+   G      T+NS + G  K        ++  D +  G+       
Sbjct: 274 SRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTY 333

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI  FC DG       + +  L  GL P    +N LI    ++       +L++ M  
Sbjct: 334 CSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAE 393

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               P+ +TY  VINGLCK     +A  + +D   +G  PD   Y T+I G CK   L  
Sbjct: 394 NGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDS 453

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +M   M  +G+ P+  TYN++++G C+    EE   + K M +KG     +TYN ++ 
Sbjct: 454 ATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVD 513

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LC   + +EA  L  EM  KG+  DV+++ TL  G+CK G I
Sbjct: 514 SLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDI 556



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 155/348 (44%), Gaps = 30/348 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---------DFLD---STGFSPNPNSLELYIQCL 148
           G  P+L + N+    L    A   A+         ++L    + GF P+  +    I   
Sbjct: 246 GVCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGY 305

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIK----TWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           C+ G++++A    +++ +  VF   K    T+ S + G  K    D    ++ D +  G 
Sbjct: 306 CKKGMVQDA----NRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGL 361

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI+     G +    +L+ ++ E+G +P    +N +I+  C+       S 
Sbjct: 362 RPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASH 421

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L+   +A+   PD FTY  +I+G CK  K   A  + N +  +G  PD + Y T+++GLC
Sbjct: 422 LVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLC 481

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G   +  +++  M  KG  PN  TYN ++   C+   + EA  L  EM  KG     V
Sbjct: 482 KAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVV 541

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEM-AQKGIFRDVITYNTLIQGYCKE 422
           ++ TL  G C  G  D AY LF  M  Q  +     TYN ++  + ++
Sbjct: 542 SFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQ 589



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/376 (24%), Positives = 165/376 (43%), Gaps = 22/376 (5%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST 132
           P      +K Q + L ++  F    S  GF     +   +   L     F+     L   
Sbjct: 7   PKHVAAVVKIQTDPLKALEMFNSAKSEDGFKHTASTYKCIVQKLGHHGEFEEMEKLLSEM 66

Query: 133 GFSPNPNSLE-LYIQCL---CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
             + N   LE  YI+ +      G ++EA   F ++       S+ + N+ +   ++   
Sbjct: 67  RENVNNALLEGAYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGY 126

Query: 189 TDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            +   K+Y  + + G           I++FC   +      LLR + E G      A+  
Sbjct: 127 HNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPELGCDSNAVAYCT 186

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +++   +        EL   M+AR   PD   + ++++ LCK     E+ R+   + +RG
Sbjct: 187 VVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRG 246

Query: 300 YVPDTVMYTTVIHGLCKMGWLG---------DARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
             P+   +   + GLC+ G L          +A +   +M++ G  P++ TYNS+I GYC
Sbjct: 247 VCPNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYC 306

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +++A R+ K+ + KG+     TY +LI G C  G  D A  +F++   KG+   ++
Sbjct: 307 KKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIV 366

Query: 411 TYNTLIQGYCKEGKIV 426
            YNTLI+G  ++G I+
Sbjct: 367 LYNTLIKGLSQQGLIL 382



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 157/374 (41%), Gaps = 50/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD ++ N + D   +    + A   L      GF P+  +    I   C+ G  + A
Sbjct: 290 GFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDGDPDRA 349

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F      G+  SI  +N+ + G  +        +L +++ E+G L         I  
Sbjct: 350 MAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYNLVING 409

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G VS+   L+   +  G  P+   +N LI  +C++      +E+++ M ++   PD
Sbjct: 410 LCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPD 469

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCK+ K  E   +F  ++E+G  P+ + Y  ++  LCK   + +A  +  
Sbjct: 470 VITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLG 529

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ETTVTYN-------- 378
           EM  KGL P+  ++ ++  G+C+I +++ A +L + M +K Y    TT TYN        
Sbjct: 530 EMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRM-EKQYDVCHTTATYNIIVSAFSE 588

Query: 379 ---------------------------TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
                                       +I G C  G   + Y    E  +K     + T
Sbjct: 589 QLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTT 648

Query: 412 YNTLIQGYCKEGKI 425
           +  ++   C + K+
Sbjct: 649 FGRVLNCLCVKDKV 662



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 155/367 (42%), Gaps = 52/367 (14%)

Query: 101 GFSPD-LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEE 156
           GF PD    C+++     +    +    F D  G    P S+ LY   I+ L + GLI  
Sbjct: 325 GFKPDEFTYCSLINGFCKDGDPDRAMAVFKDGLGKGLRP-SIVLYNTLIKGLSQQGLILP 383

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A    +++ E G   +I T+N  + G  K+        L  D I  G          LI 
Sbjct: 384 ALQLMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLID 443

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C   K+    E++ ++   G+ P+   +N L++  C+      V E+   M  +   P
Sbjct: 444 GYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTP 503

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA---- 323
           +  TY  +++ LCK++K  EA  +  ++K +G  PD V + T+  G CK+G +  A    
Sbjct: 504 NIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLF 563

Query: 324 --------------------------------RKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
                                            K++  M + G  P+ YTY  +I G+C+
Sbjct: 564 RRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCK 623

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           + N+ +  +   E ++K +  +  T+  ++  LC+  +  EA  +   M QKGI  +  T
Sbjct: 624 MGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGIIHLMLQKGIVPE--T 681

Query: 412 YNTLIQG 418
            NT+ + 
Sbjct: 682 VNTIFEA 688



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 132/283 (46%), Gaps = 17/283 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L D   +      A + ++   S G +P+  +    +  LC++G  EE 
Sbjct: 430 GCPPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEV 489

Query: 158 FCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRT-DLVWK-----LYHDLIESGYLIQA 208
              F  ++E G   +I T+N    +L    K++   DL+ +     L  D++  G L   
Sbjct: 490 MEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTG 549

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTA-FNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           FC  G +   Y+L R++ +   V   TA +N ++S F E+ N     +L   M      P
Sbjct: 550 FCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDP 609

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           DN+TY  VI+G CK     + Y+   +  E+ ++P    +  V++ LC    + +A  + 
Sbjct: 610 DNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGII 669

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
             M+ KG++P   T N++     ++  +   K L +++L KG+
Sbjct: 670 HLMLQKGIVPE--TVNTIFEADKKV--VAAPKILVEDLLKKGH 708


>gi|359481393|ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/281 (30%), Positives = 146/281 (51%), Gaps = 9/281 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I C C SG ++ A   F ++ + G+  S  T+ + + G  K  + +    L +++   G 
Sbjct: 337 ISCNCRSGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGI 396

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  +C  G V E   L   + + GL  +  A+N + S  C+         
Sbjct: 397 DLNPVIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKG 456

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL +MV R  +P+  ++  +I+  CK    +EA RVF +++E+G VP+ + Y  +I G  
Sbjct: 457 LLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYS 516

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + +A K+  E+ ++GL+P+ YT  S+IHG C    ++ A +L  EM  +G     V
Sbjct: 517 KRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVV 576

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           TY  +I+GL   GR++EA+ L++EM + G+  D   Y++L+
Sbjct: 577 TYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYSSLV 617



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 149/308 (48%), Gaps = 9/308 (2%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +  ++  G + N  +  L I      G IEEA   F +++E G+   +  + S +    +
Sbjct: 283 LTLMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCR 342

Query: 186 IDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                    L+ ++ + G          LI   C  G++     L+ ++   G+      
Sbjct: 343 SGNVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVI 402

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FN LI  +CE         L   M  +    D F Y  + +GLCK  ++ EA  +   + 
Sbjct: 403 FNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMV 462

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           ERG  P+T+ +TT+I   CK G   +A++++ EM  KG +PN  TYN +I GY +  N++
Sbjct: 463 ERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNMK 522

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA +L  E+ ++G      T  +LI G C+ G+ D A  LF+EM Q+G+  +V+TY  +I
Sbjct: 523 EAHKLKDELENRGLIPDVYTCTSLIHGECIDGKVDMALKLFDEMPQRGLVPNVVTYTAMI 582

Query: 417 QGYCKEGK 424
            G  K+G+
Sbjct: 583 SGLSKDGR 590



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 148/297 (49%), Gaps = 13/297 (4%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL-----VWK 194
           SL + +  LC+ G +E       ++   GV  ++ T+N+ + G  K  R DL     +  
Sbjct: 227 SLTIVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK--RLDLGGVAEILT 284

Query: 195 LYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           L        +++    LI  F N GK+ E   L  ++ E G+  +   +  +IS  C   
Sbjct: 285 LMEKEGVACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSG 344

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           N  R   L   M  +   P   TY  +I+G+CK+ +   A  + N+++ +G   + V++ 
Sbjct: 345 NVKRALVLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFN 404

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I G C+ G + +A ++   M  KGL  + + YNS+  G C+++  +EAK L   M+++
Sbjct: 405 TLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVER 464

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G    T+++ TLI   C  G   EA  +F EM +KG   ++ITYN LI GY K G +
Sbjct: 465 GVSPNTMSFTTLIDIYCKEGNFVEAKRVFREMEEKGNVPNIITYNVLIDGYSKRGNM 521



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 119/257 (46%), Gaps = 35/257 (13%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++   C  G V  G +L+ +V   G+      +N  I  + ++ + G V+E+L  M    
Sbjct: 231 VLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEG 290

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            A +  TY  +I+G     K  EA R+F +++E+G   D  +YT++I   C+ G +  A 
Sbjct: 291 VACNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNVKRAL 350

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++ EM  KGL+P+ +TY ++IHG C+   +E A+ L  EM  KG     V +NTLI G 
Sbjct: 351 VLFDEMTDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNPVIFNTLIDGY 410

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYN------------------------------- 413
           C  G  DEA  L   M +KG+  DV  YN                               
Sbjct: 411 CESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKDEAKGLLFSMVERGVSPNT 470

Query: 414 ----TLIQGYCKEGKIV 426
               TLI  YCKEG  V
Sbjct: 471 MSFTTLIDIYCKEGNFV 487



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 138/306 (45%), Gaps = 30/306 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNP 138
           +  NV  ++  F  + +  G  P   +   L   + +A    A ++ ++ +   G   NP
Sbjct: 342 RSGNVKRALVLFDEM-TDKGLIPSAHTYGALIHGVCKAGQMEAAQMLVNEMQGKGIDLNP 400

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
                 I   CESG+++EA      +++ G+   +  +NS   G  K++R D        
Sbjct: 401 VIFNTLIDGYCESGMVDEALRLQVVMEKKGLESDVFAYNSIASGLCKLNRKD-------- 452

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                             E   LL  ++E G+ P   +F  LI  +C++ NF     +  
Sbjct: 453 ------------------EAKGLLFSMVERGVSPNTMSFTTLIDIYCKEGNFVEAKRVFR 494

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +   P+  TY  +I+G  K     EA+++ ++L+ RG +PD    T++IHG C  G
Sbjct: 495 EMEEKGNVPNIITYNVLIDGYSKRGNMKEAHKLKDELENRGLIPDVYTCTSLIHGECIDG 554

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A K++ EM  +GL+PN  TY +MI G  +    EEA +L+ EM + G       Y+
Sbjct: 555 KVDMALKLFDEMPQRGLVPNVVTYTAMISGLSKDGRSEEAFKLYDEMKETGLTPDDTVYS 614

Query: 379 TLIAGL 384
           +L+  L
Sbjct: 615 SLVGSL 620



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 35/174 (20%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA   F  ++++G+  D       +  L + G +    + +  M++  +    Y+   ++
Sbjct: 173 EALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLTIVL 232

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG----------------------- 383
            G C+  ++E  ++L  E+  KG     VTYN  I G                       
Sbjct: 233 DGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFKRLDLGGVAEILTLMEKEGVA 292

Query: 384 -------LCLH-----GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                  L +H     G+ +EA  LFEEM +KGI  DV  Y ++I   C+ G +
Sbjct: 293 CNVVTYTLLIHGFSNIGKIEEAQRLFEEMREKGIEADVYVYTSIISCNCRSGNV 346



 Score = 44.7 bits (104), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 48/103 (46%)

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
             G+A + +  M  KG   +E +    +    R   ++   R  + M++     T  +  
Sbjct: 170 MFGEALEAFEHMEKKGFHIDERSCLVYLLALRRGGQVDSCLRFFRRMVNLDVEVTVYSLT 229

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            ++ GLC  G  +    L +E+A KG+  +V+TYN  I+GY K
Sbjct: 230 IVLDGLCKRGDVEMGRKLMDEVAAKGVKANVVTYNAFIEGYFK 272


>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
          Length = 1295

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 156/331 (47%), Gaps = 15/331 (4%)

Query: 109  CNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC--ESGLIEEAFCAFSK 163
            CN L   LVE      A    D   S G SPN  S  + +      E   +EEAF    +
Sbjct: 833  CNFLLKCLVEGNQIMYARSLFDDMKSCGPSPNVCSYSILMSMYTHGERSCLEEAFELLCE 892

Query: 164  LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
            ++  GV  +  T+ + L G  +  +    W     L +SG          +I  FC +G+
Sbjct: 893  MESNGVRPNATTYGTYLYGLCRSRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQ 952

Query: 215  VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
            V +  E+   + + G VP+  +++ L+   C++ +  +  ++L  M      P+  +Y  
Sbjct: 953  VDKAIEVFHGMKKCGYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSS 1012

Query: 275  VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
            +++GLCK+ +   A ++F +L++ G+  D + Y+ ++HG C+   L     +WF+MIH  
Sbjct: 1013 LLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHN 1072

Query: 335  LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
            + P+ Y Y S+I+  CR  NL++A  + + ML+ G     VT   L+      G   EA+
Sbjct: 1073 IAPDVYNYTSLIYALCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAF 1132

Query: 395  HLFEEMAQK-GIFRDVITYNTLIQGYCKEGK 424
               + M Q  GI  ++  Y  +I G CK  K
Sbjct: 1133 LFLDRMHQSLGIVPNLCMYRVMINGLCKTNK 1163



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 146/316 (46%), Gaps = 17/316 (5%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
            G+ PD+ S ++L D L +        D L+     G  PN  S    +  LC++G +  A
Sbjct: 967  GYVPDVHSYSILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALA 1026

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               F  L++ G       ++  L GC +      +  L+ D+I             LI A
Sbjct: 1027 LKIFKNLQDHGFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYA 1086

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM-VARNRAP 267
             C    + +   +   +LE+GL P       L+  F ++   G     L  M  +    P
Sbjct: 1087 LCRHRNLQDALGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVP 1146

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            +   Y  +INGLCK+ K    + VF D+ +RGYVPD V+Y+ +I G  K   L +A +++
Sbjct: 1147 NLCMYRVMINGLCKTNKYSGVWNVFADMIKRGYVPDVVLYSIIIEGFVKALKLQEALRLY 1206

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +M+ +G+ PN +TY+S+I+G C  D L EA  L ++M+ +      V Y ++IA  C  
Sbjct: 1207 HKMLDEGVKPNIFTYSSLINGLCNDDRLPEAMGLIRDMIGEDLLLDNVLYTSIIACYCRR 1266

Query: 388  GRTDEAYHLFEEMAQK 403
                 A     EMAQ+
Sbjct: 1267 LNMKAAM----EMAQR 1278



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/439 (22%), Positives = 188/439 (42%), Gaps = 57/439 (12%)

Query: 42   EIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPL----FFREFLKQQNNVLLSIRFFQWLH 97
            ++   V +I      +E  LL+ I + N         F  + L + N ++ +   F  + 
Sbjct: 798  QVYAAVIRIFVESSMFEDALLTYIQAKNIGVDRRLCNFLLKCLVEGNQIMYARSLFDDMK 857

Query: 98   SHYGFSPDLVSCNVLFDSLV--EARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESG 152
            S  G SP++ S ++L       E    + A + L   +S G  PN  +   Y+  LC S 
Sbjct: 858  S-CGPSPNVCSYSILMSMYTHGERSCLEEAFELLCEMESNGVRPNATTYGTYLYGLCRSR 916

Query: 153  LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
             +  A+     L + G   S   +N+ + G     + D   +++H + + GY        
Sbjct: 917  QVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHSYS 976

Query: 205  -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK--------------- 248
             L+   C  G + +GY++L ++  +G+ P   +++ L+   C+                 
Sbjct: 977  ILVDGLCKQGDLLKGYDMLEEMARNGICPNQVSYSSLLHGLCKTGQVALALKIFKNLQDH 1036

Query: 249  --------------------NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
                                +   +S+L   M+  N APD + Y  +I  LC+ R   +A
Sbjct: 1037 GFEHDQINYSIILHGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDA 1096

Query: 289  YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK--GLLPNEYTYNSMI 346
              VF  + E G  P+ V  T ++    K G +G+A  ++ + +H+  G++PN   Y  MI
Sbjct: 1097 LGVFELMLENGLSPNIVTCTILVDSFSKQGLVGEAF-LFLDRMHQSLGIVPNLCMYRVMI 1155

Query: 347  HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            +G C+ +       +  +M+ +GY    V Y+ +I G     +  EA  L+ +M  +G+ 
Sbjct: 1156 NGLCKTNKYSGVWNVFADMIKRGYVPDVVLYSIIIEGFVKALKLQEALRLYHKMLDEGVK 1215

Query: 407  RDVITYNTLIQGYCKEGKI 425
             ++ TY++LI G C + ++
Sbjct: 1216 PNIFTYSSLINGLCNDDRL 1234



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 8/195 (4%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +  +I  F E   F     LL  + A+N   D      ++  L +  + + A  +F+D+
Sbjct: 799 VYAAVIRIFVESSMFE--DALLTYIQAKNIGVDRRLCNFLLKCLVEGNQIMYARSLFDDM 856

Query: 296 KERGYVPDTVMYTTVI----HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           K  G  P+   Y+ ++    HG  +   L +A ++  EM   G+ PN  TY + ++G CR
Sbjct: 857 KSCGPSPNVCSYSILMSMYTHG--ERSCLEEAFELLCEMESNGVRPNATTYGTYLYGLCR 914

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +  A    + +   G   +   +N +I G C  G+ D+A  +F  M + G   DV +
Sbjct: 915 SRQVTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDVHS 974

Query: 412 YNTLIQGYCKEGKIV 426
           Y+ L+ G CK+G ++
Sbjct: 975 YSILVDGLCKQGDLL 989


>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 154/330 (46%), Gaps = 29/330 (8%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           ++GF PD+ + N+L   L +  +   A D ++     G  PN  +  + +  LC++GL+E
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EA     ++   G+     T NS +  C                     LI A C   KV
Sbjct: 443 EAGLVLHEMSARGL-----TINSVIYNC---------------------LICALCRKEKV 476

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                LL ++   G  P+   +N LI   C+         L H M+      +N TY  +
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ L +     +A  + ND+  RG   D + Y  +I   CK+G +    +++ +MI  GL
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +  + N MI+G C++  ++ A    ++ +++G+    VTYN+++ GLC  GR  EA +
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LF+ +  +G+  D  TYNT I   CKEG +
Sbjct: 657 LFDRLQVEGVRPDAFTYNTFISWQCKEGMV 686



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 153/326 (46%), Gaps = 30/326 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+    N L +  V +   K A  FL+ T    GF P+  +  + +  LC+ G +  A  
Sbjct: 352 PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARD 411

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
             +++   G   ++ T+                            L+   C  G + E  
Sbjct: 412 LVNEMSRRGCEPNVITY--------------------------AILVNGLCKAGLLEEAG 445

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            +L ++   GL   +  +N LI   C K+       LL  M  +   PD FTY  +I GL
Sbjct: 446 LVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGL 505

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK  +  EA+R+F+++   G V + V Y T+IH L + G    A  +  +M+ +G   ++
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDK 565

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN +I  +C++ N+E+   L+++M+  G G  T++ N +I GLC  G+ D A+    +
Sbjct: 566 ITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRD 625

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
              +G   D++TYN+++ G CK G+I
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRI 651



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G +++A C   +V     LLR + + G VP +  +  LI    +K       +LL  M  
Sbjct: 222 GIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFV 281

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T+ +VI+GLCK  K  +A ++ + +  RG+ PD + Y  ++HGLC++G L +
Sbjct: 282 MGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNE 341

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR-LHKEMLDKGYGETTVTYNTLI 381
           ARK+  ++      PN    N++I+GY     L+EA+  L++ M++ G+     TYN L+
Sbjct: 342 ARKILIKIP----CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILM 397

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            GLC  G    A  L  EM+++G   +VITY  L+ G CK G
Sbjct: 398 HGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAG 439



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 32/204 (15%)

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           + + + M+++  +P  FT+  V+  LC   +   A  +  D+ + G VP++++Y T+IH 
Sbjct: 203 TNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHA 262

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L +   + +A K+  EM   G +P+  T+N +IHG C+++ + +A +L   ML +G+   
Sbjct: 263 LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPD 322

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLF--------------------------------EEMA 401
            +TY  L+ GLC  G+ +EA  +                                 E M 
Sbjct: 323 NMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMI 382

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G   D+ TYN L+ G CKEG +
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSL 406


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 143/325 (44%), Gaps = 9/325 (2%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
           N +      A   + A     +    PN  +    ++ LC  G I +A     ++   G 
Sbjct: 131 NAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGC 190

Query: 170 FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE 220
                 ++  L    +        ++  DL   G          ++ A C+ G V E   
Sbjct: 191 APIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALH 250

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LLR +   G  P+  ++N ++   C  K +G V EL+  MV     P+  T+  +I+ LC
Sbjct: 251 LLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLC 310

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           ++      + V   + E G  PD  MY T+I G+CK G L  A ++   M   GL PN  
Sbjct: 311 RNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKPNVV 370

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+++ G C  +  EE + L  EM DK      VT+N L+   C +G  D    L E+M
Sbjct: 371 CYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 430

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            + G   DVITY T+I G+CKEG I
Sbjct: 431 LEHGCMPDVITYTTVINGFCKEGLI 455



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 167/355 (47%), Gaps = 13/355 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPN 139
           Q +V  ++   + L S +G  PD+VS N +   L  A+ +    + ++        PN  
Sbjct: 242 QGSVDEALHLLRDLPS-FGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 300

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +    I  LC +GL E      +++ E G    I+ + + + G  K    ++  ++ + +
Sbjct: 301 TFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRM 360

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G          L++  C+  +  E  ELL ++ +     ++  FN L+  FC+    
Sbjct: 361 PSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLV 420

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            RV ELL  M+     PD  TY  VING CK     EA  +   +   G  P+T+ YT V
Sbjct: 421 DRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIV 480

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           + GLC      DA  +  +MI +G   N  T+N++I+  C+   +E+A  L K+ML  G 
Sbjct: 481 LKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGC 540

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++Y+T+I GL   G+TDEA  L   M  KG+  + I Y+++     +EG+I
Sbjct: 541 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRI 595



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 179/382 (46%), Gaps = 21/382 (5%)

Query: 61  LLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRF--FQWLHSHY---GFSPDLVSCNVLFD 114
           LL D+PSF    D + +   LK    + ++ R+   Q L          P++V+ N L  
Sbjct: 251 LLRDLPSFGCEPDVVSYNAVLK---GLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLIS 307

Query: 115 SLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
            L     F+   + L      G +P+       I  +C+ G +E A    +++   G+  
Sbjct: 308 YLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEVAHEILNRMPSYGLKP 367

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELL 222
           ++  +N+ L G    +R +   +L  ++ +            L+  FC +G V    ELL
Sbjct: 368 NVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELL 427

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            Q+LE G +P+   +  +I+ FC++        LL +M A    P+  +Y  V+ GLC +
Sbjct: 428 EQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLKGLCSA 487

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            + ++A  + + + ++G   + + + T+I+ LCK G +  A ++  +M+  G  P+  +Y
Sbjct: 488 ERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 547

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           +++I G  +    +EA  L   M++KG    T+ Y+++ + L   GR ++   +F+ +  
Sbjct: 548 STVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQD 607

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
             I  D + YN +I   CK G+
Sbjct: 608 TTIRSDAVLYNAVISSLCKRGE 629



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/320 (23%), Positives = 135/320 (42%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N L   L  A  ++   + L        P    +  + +   C++GL++ 
Sbjct: 363 YGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR 422

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++ E G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 423 VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 482

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+  +  +  +L+ Q+++ G       FN LI+  C+K    +  ELL  M+    +P
Sbjct: 483 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 542

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G +    +M+
Sbjct: 543 DLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMF 602

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    E A      M+  G      TY  LI GL   
Sbjct: 603 DNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASE 662

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  +  E+  KG  R
Sbjct: 663 GFVKEAQEMLTELCSKGALR 682


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 158/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+ + L D L +A+A   A   L      G  PN  +  + I+  C  G +EEA
Sbjct: 233 GFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEA 292

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                K+   G+   + T+   +    KI R      ++  ++  G          L+  
Sbjct: 293 VRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHG 352

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + +  +LL  ++ DG+  E+ AFN LI  + +     +       M      PD
Sbjct: 353 YATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPD 412

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  VI+ LCK  +  +A   FN +   G  P+ + +T++IHGLC +G      ++ F
Sbjct: 413 VVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAF 472

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI++G+ P+    N+++   C+   + EA+     ++  G     V+YNTLI G C  G
Sbjct: 473 EMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVG 532

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DE+   F+ M   G+  D  TYN L+ GY K G++
Sbjct: 533 KMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRV 569



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           Y  SP++VS + + D   +      A    D +   GF P+  +    I  LC++  + +
Sbjct: 197 YNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNK 256

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A      + + GV  + +T+N  + G   + + +   +L   +  SG          LIQ
Sbjct: 257 AEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQ 316

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G+ +E   +   ++  G  P +T ++ L+  +  K     V +LL  M+      
Sbjct: 317 YYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPF 376

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           ++  +  +I    K     +A   F ++++ G  PD V Y+TVIH LCK+G + DA   +
Sbjct: 377 EHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHF 436

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ +GL PN  ++ S+IHG C I   ++ + L  EM+++G     +  NT++  LC  
Sbjct: 437 NQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKE 496

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR  EA   F+ +   G+  +V++YNTLI GYC  GK+
Sbjct: 497 GRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKM 534



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 123/227 (54%), Gaps = 4/227 (1%)

Query: 205 LIQAFCNDGKVSEGYELL-RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           LI+  C+  +  +  +++ R++ E G  P+  ++N LI   C +K      ELL  M A 
Sbjct: 135 LIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLHMTAD 194

Query: 264 ---NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
              N +P+  +Y  +I+G  K  +  +AY +F+++  +G+ PD V Y+++I GLCK   +
Sbjct: 195 GGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAM 254

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A  +   M  KG++PN  TYN MI GYC +  LEEA RL K+M   G     VTY  L
Sbjct: 255 NKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILL 314

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           I   C  GR  EA  +F+ M +KG   +   Y+ L+ GY  +G +++
Sbjct: 315 IQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID 361



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 140/299 (46%), Gaps = 13/299 (4%)

Query: 140 SLELYIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYH 197
           +L   I+ LC+    ++A    F ++ E+G    + ++N+ + G C++    + +  L H
Sbjct: 131 TLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLLH 190

Query: 198 DLIESGY-----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              + GY           +I  F  +G+V + Y L  +++  G  P+   ++ LI   C+
Sbjct: 191 MTADGGYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCK 250

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            +   +   +L  M  +   P+  TY  +I G C   +  EA R+   +   G  PD V 
Sbjct: 251 AQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVT 310

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  +I   CK+G   +AR ++  M+ KG  PN   Y+ ++HGY     L + + L   M+
Sbjct: 311 YILLIQYYCKIGRCAEARSVFDSMVRKGQKPNSTIYHILLHGYATKGALIDVRDLLDLMI 370

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G       +N LI     HG  D+A   F EM Q G+  DV++Y+T+I   CK G++
Sbjct: 371 RDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRV 429



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 143/300 (47%), Gaps = 37/300 (12%)

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD-------LVWKLYHDLIESGY--- 204
           E+A   F +L       S+  +NS L    + D +        L   L++ +  SG    
Sbjct: 31  EDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMARSGVNMM 90

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN------ 249
                    LI+ FC  G++   +      L+ G   +N   N+LI   C+ K       
Sbjct: 91  AANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWRVQNVTLNQLIKGLCDGKRTDDAMD 150

Query: 250 --FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-KERGY--VPDT 304
             F R+ EL +T       PD F+Y  +I GLC  +K  EA  +   +  + GY   P+ 
Sbjct: 151 MVFRRMPELGYT-------PDVFSYNALIKGLCVEKKSQEALELLLHMTADGGYNCSPNV 203

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V Y+T+I G  K G +  A  ++ EMI +G  P+  TY+S+I G C+   + +A+ + + 
Sbjct: 204 VSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYSSLIDGLCKAQAMNKAEAILQH 263

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M DKG    T TYN +I G C  G+ +EA  L ++M+  G+  DV+TY  LIQ YCK G+
Sbjct: 264 MFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGR 323



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 142/307 (46%), Gaps = 29/307 (9%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +L++ R     +D +   G      +  + I    + G +++A  AF+++++ G      
Sbjct: 358 ALIDVRDL---LDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNG------ 408

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
                               L  D++    +I   C  G+V +      Q++ +GL P  
Sbjct: 409 --------------------LRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNI 448

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            +F  LI   C    + +V EL   M+ R   PD      +++ LCK  + +EA   F+ 
Sbjct: 449 ISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDM 508

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G  P+ V Y T+I G C +G + ++ K +  M+  GL P+ +TYN++++GY +   
Sbjct: 509 VIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGR 568

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +E+A  L++EM  K      +T N ++ GL   GR   A  L+ +M  +G    + TYNT
Sbjct: 569 VEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNT 628

Query: 415 LIQGYCK 421
           ++ G C+
Sbjct: 629 VLGGLCE 635



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 144/300 (48%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  S    I  LC+ G +E+A   F+++   G+  +I ++ S + G   I     V
Sbjct: 408 GLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKV 467

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  ++I  G          ++   C +G+V E  +    V+  G+ P   ++N LI  
Sbjct: 468 EELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDG 527

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C         +    MV+    PD++TY  ++NG  K+ +  +A  ++ ++  +     
Sbjct: 528 YCFVGKMDESIKQFDRMVSIGLRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFC 587

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            +    ++HGL + G +  AR+++ +M+ +G      TYN+++ G C    ++EA R+ +
Sbjct: 588 AITSNIILHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFE 647

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++  K +     T+N +I  L   GR DEA  LF  M  +G    VITY+ +I+   +EG
Sbjct: 648 DLRSKEFELDVWTFNIVINALLKVGRIDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEG 707


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 15/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAF 158
           GF+P+  +  VL   L        A   L+     PNPN +     I      G ++EA 
Sbjct: 317 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV---PNPNVVLFNTLINGYVSRGRLDEAK 373

Query: 159 CAFSK-LKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLY-----HDLIESGYLIQA 208
               + +  +G    I T+N+ +LG  K    +   +L+ ++       ++I    LI  
Sbjct: 374 AVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDR 433

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G++ E   +L ++   GL      +N LIS  C+ +       +   M ++   PD
Sbjct: 434 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 493

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +I GLCK  K  EA  ++ D+   G + +T+ Y T+IH   + G + +A K+  
Sbjct: 494 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 553

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G   ++ TYN +I   CR  N+E+   L ++M+ KG     ++ N LI GLC  G
Sbjct: 554 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 613

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               A     +M  +G+  D++TYN+LI G CK G+
Sbjct: 614 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 649



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 17/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N     L +      A   +D     GF+PN  +  + +  LC  G ++EA
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 341

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQ 207
               +K+    V      +N+ + G +   R D    + H          D+     LI 
Sbjct: 342 RMLLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 397

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G +    EL+ ++   G  P    +  LI RFC++        +L  M  +  A 
Sbjct: 398 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLAL 457

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   Y  +I+ LCK  K  +A  +F D+  +G  PD   + ++I GLCK+    +A  ++
Sbjct: 458 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 517

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ +G++ N  TYN++IH + R   ++EA +L  +ML +G     +TYN LI  LC  
Sbjct: 518 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 577

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  ++   LFE+M  KG+  + I+ N LI G C+ G I
Sbjct: 578 GNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI 615



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 18/338 (5%)

Query: 101 GFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ + N L         LV AR     M+ +   G  PN  +  + I   C+ G +
Sbjct: 384 GCGPDIFTYNTLILGLCKKGYLVSAREL---MNEMQIKGCEPNVITYTILIDRFCKEGRL 440

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           EEA     ++   G+  +   +N  +    K ++      ++ D+   G          L
Sbjct: 441 EEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSL 500

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   K  E   L + +L +G++     +N LI  F  +       +L++ M+ R  
Sbjct: 501 IFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 560

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D+ TY  +I  LC++    +   +F D+  +G  P+ +    +I+GLC+ G +  A +
Sbjct: 561 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 620

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
              +MIH+GL P+  TYNS+I+G C+    +EA  L  ++  +G     +TYNTLI+  C
Sbjct: 621 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHC 680

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             G  D+A+ L       G   + +T+  L+  + KEG
Sbjct: 681 KEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 718



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 105/433 (24%), Positives = 179/433 (41%), Gaps = 41/433 (9%)

Query: 5   PFSVLTILRQNPRN----FQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQT 60
           PF+V+  + +  +N    F+ P+      SI      + Y +          +   WE+ 
Sbjct: 6   PFTVMLKIPKFTKNLQYFFKTPS-----FSISPSGFNRFYNDTVFNNTNGLDSGTEWERL 60

Query: 61  LLS-DIP----SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDS 115
           L   D+P    S     P    + L+   +V  S+  FQW  +  G+             
Sbjct: 61  LKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGY------------- 107

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
                 F V    +D  G +    +++  +  + + G++         +K  G  G    
Sbjct: 108 ---CHMFDVYYMLIDKLGAAGEFKTIDALLMQMKQEGIVFRESLFILIMKHYGRAGLPGQ 164

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
               LL    +   +  ++ Y+ +++   L+   C     +  YE+L +    G+ P   
Sbjct: 165 ATRLLLDMRGVYSCEPTFRSYNVVLD--VLLAGNCPKVVPNVFYEMLSK----GISPTVY 218

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F  ++   C          LL  M      P+   Y+ +I+ L K  +  E  ++  ++
Sbjct: 219 TFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEM 278

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
              G +PD   +   IHGLCKM  + +A K+   M+ +G  PN +TY  ++HG CR+  +
Sbjct: 279 LLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKV 338

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF-EEMAQKGIFRDVITYNT 414
           +EA+ L    L+K      V +NTLI G    GR DEA  +  E M   G   D+ TYNT
Sbjct: 339 DEARML----LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNT 394

Query: 415 LIQGYCKEGKIVN 427
           LI G CK+G +V+
Sbjct: 395 LILGLCKKGYLVS 407


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 161/353 (45%), Gaps = 41/353 (11%)

Query: 107 VSCNVLFDSLVEAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           V+CN L D L  AR      V    + S    PN  S    ++ LC +G I++A    ++
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIESGYLIQAFCNDGKVSEG 218
           +    +   + T+N  +    K  R     + +      D++    L+   C +G+V++ 
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMPEPDVVTYNTLLGGLCKNGRVAQA 120

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             L   +   G+ P +  +  LI  FC+   F     LL  M +R  +P  ++Y  +ING
Sbjct: 121 CSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIING 180

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK+RK  +AY++F ++K  G  PD V Y T+IHGLC    L +A+ +   M+  G  P+
Sbjct: 181 LCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPD 240

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL------------ 386
           + T+ ++I G C  D ++EA  L + M  +G     VT+  L++ LC+            
Sbjct: 241 KITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVR 300

Query: 387 ------------------HGRT---DEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                              GR    D A  L ++MA++G+  +V+TY    +G
Sbjct: 301 NYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKG 353



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 165/367 (44%), Gaps = 49/367 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           PD+ + NV+ D+L +AR    A++F ++    P+  +    +  LC++G + +A   F  
Sbjct: 68  PDVFTYNVVIDTLCKARRISRAIEFFETMP-EPDVVTYNTLLGGLCKNGRVAQACSLFGS 126

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
           ++  G+  S  T+ + +    K+ + +  + L   +              +I   C + K
Sbjct: 127 MEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRK 186

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V + Y+L  ++   G  P+   +N LI   C K+      +LL  MV     PD  T+  
Sbjct: 187 VDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTA 246

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA----------- 323
           +I GLC + +  EA+ +F  + ++G  PD V +T ++  LC +  L  A           
Sbjct: 247 LIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACP 306

Query: 324 --------------RKMWFE--------MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
                         R+  F+        M  +G+ PN  TY +   G   + + +E  R 
Sbjct: 307 EAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKG---LGDWKEGMRA 363

Query: 362 HKE---MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           ++E   ML++G     V YN L+ G C   R D A  +   M Q G+  +++TYNTL+  
Sbjct: 364 YREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGH 423

Query: 419 YCKEGKI 425
           +C++GK+
Sbjct: 424 HCRKGKV 430



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 112/222 (50%), Gaps = 4/222 (1%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           YL++A C  GK+ +    + ++  + LVP+   +N +I   C+ +   R  E   TM   
Sbjct: 40  YLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETM--- 96

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  TY  ++ GLCK+ +  +A  +F  ++  G  P  V YTT+I   CKM     A
Sbjct: 97  -PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETA 155

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +   M  +   P  Y+Y S+I+G C+   +++A +L +EM   G     VTYNTLI G
Sbjct: 156 YGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHG 215

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC+  R  EA  L   M + G   D IT+  LI+G C   +I
Sbjct: 216 LCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRI 257



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 146/350 (41%), Gaps = 47/350 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P  V+   L D   +   F+ A   +  + S   SP   S    I  LC++  +++A
Sbjct: 131 GITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQA 190

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           +  F ++K  G      T+N+ + G C+K  R      L   ++E+G+         LI+
Sbjct: 191 YQLFEEMKLAGCKPDRVTYNTLIHGLCVK-QRLHEAKDLLTVMVENGFQPDKITFTALIE 249

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC---------------------- 245
             C   ++ E + L + + + G  P+      L+S+ C                      
Sbjct: 250 GLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALSVVRNYPACPEAV 309

Query: 246 -----------EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
                       ++ F R + LL  M  R   P+  TY     GL   ++ + AYR F  
Sbjct: 310 ILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDWKEGMRAYREFRR 369

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + E+G  PD V Y  ++ G CK   L  A KM   M   GL PN  TYN+++  +CR   
Sbjct: 370 MLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGK 429

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +E    L   M+ +G      T++TL+AGL + G+ D AY        +G
Sbjct: 430 VEAIGELLHTMVSRGRQPDVATWSTLVAGLFMVGQADAAYSFLNLAMSQG 479



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/464 (21%), Positives = 183/464 (39%), Gaps = 62/464 (13%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWE-------Q 59
           ++L +L +  R+ Q      R  S + K +   Y  + K +C+  +             +
Sbjct: 5   ALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMARE 64

Query: 60  TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE- 118
            L+ D+ ++N        + L +   +  +I FF+ +       PD+V+ N L   L + 
Sbjct: 65  KLVPDVFTYNV-----VIDTLCKARRISRAIEFFETMPE-----PDVVTYNTLLGGLCKN 114

Query: 119 ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
            R  +    F  ++  G +P+  +    I   C+    E A+     +       ++ ++
Sbjct: 115 GRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSY 174

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLE 227
            S + G  K  + D  ++L+ ++  +G          LI   C   ++ E  +LL  ++E
Sbjct: 175 CSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVE 234

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL- 286
           +G  P+   F  LI   C          L   M  +  APD  T+  +++ LC  RK   
Sbjct: 235 NGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRP 294

Query: 287 --------------------------------EAYRVFNDLKERGYVPDTVMYTTVIHGL 314
                                            A R+   +  RG  P+ V YT    GL
Sbjct: 295 ALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGL 354

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
                   A + +  M+ +G+ P+   YN ++ G+C+ D L+ A+++ + M   G     
Sbjct: 355 GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNI 414

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           VTYNTL+   C  G+ +    L   M  +G   DV T++TL+ G
Sbjct: 415 VTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAG 458



 Score = 44.7 bits (104), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 6/80 (7%)

Query: 352 IDNLEEAKR------LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           +D LE A+R      + + +  +      ++Y  L+  LC  G+ D+A     EMA++ +
Sbjct: 7   LDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKL 66

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             DV TYN +I   CK  +I
Sbjct: 67  VPDVFTYNVVIDTLCKARRI 86


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 161/338 (47%), Gaps = 17/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           GFS D ++   L   L        A   L+     PNPN++ LY   I     SG  EEA
Sbjct: 305 GFSTDALTYGYLMHGLCRMGQVDEARALLNKI---PNPNTV-LYNTLISGYVASGRFEEA 360

Query: 158 F-CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
               ++ +   G      T+N  + G +K        +L ++++   +         LI 
Sbjct: 361 KDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILIN 420

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G++ E  E++  +   GL      +N LI   C+  N     +L   M  +   P
Sbjct: 421 GFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKP 480

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +T+  +INGLCK+ K  EA  +++D+   G + +TV Y T++H       +  A K+ 
Sbjct: 481 DIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLV 540

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ +G   +  TYN +I   C+   +E+   L +EML KG   T ++ N LI+GLC  
Sbjct: 541 DEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRT 600

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+ ++A    ++M  +G+  D++TYN+LI G CK G +
Sbjct: 601 GKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHV 638



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 91/326 (27%), Positives = 149/326 (45%), Gaps = 29/326 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD  + N++ D LV+      A++ L+   +  F PN  +  + I   C+ G +EEA
Sbjct: 372 GYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEA 431

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               + +   G+     + N+    C                     LI A C DG + E
Sbjct: 432 AEIVNSMSAKGL-----SLNTVGYNC---------------------LICALCKDGNIEE 465

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +L  ++   G  P+   FN LI+  C+         L H M       +  TY  +++
Sbjct: 466 ALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTLVH 525

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                    +A+++ +++  RG   D + Y  +I  LCK G +     ++ EM+ KG+ P
Sbjct: 526 AFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFP 585

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
              + N +I G CR   + +A +  ++M+ +G     VTYN+LI GLC  G   EA +LF
Sbjct: 586 TIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLF 645

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
            ++  +GI  D ITYNTLI  +C EG
Sbjct: 646 NKLQSEGIRPDAITYNTLISRHCHEG 671



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 170/369 (46%), Gaps = 22/369 (5%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST 132
           P    + L+   ++  S+  FQ   +  G+S    +C +L D L     FKV    L   
Sbjct: 66  PFQLCKLLELPLDIPTSMELFQRAGAQKGYSHTFDACYLLIDKLGAVGDFKVIEKLLKQM 125

Query: 133 ---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLGCIKI 186
              G     +   L ++   ++GL  +A      L   GV+    + K++N  L   +  
Sbjct: 126 KDEGLLFKESLFILIMKHYGKAGLPGQATRLL--LDMWGVYSCDPTFKSYNVVLDILVDG 183

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           D   +   +++D++  G          +++A C   +V     LLR + + G VP +  +
Sbjct: 184 DCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGCVPNSVIY 243

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             LI   CE        +LL  M      PD  T+ +VI+GLC++ +  EA ++ + +  
Sbjct: 244 QTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAKLLDRMLL 303

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG+  D + Y  ++HGLC+MG + +AR     +++K   PN   YN++I GY      EE
Sbjct: 304 RGFSTDALTYGYLMHGLCRMGQVDEARA----LLNKIPNPNTVLYNTLISGYVASGRFEE 359

Query: 358 AKR-LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           AK  L+  M+  GY     T+N +I GL   G    A  L  EM  K    +VITY  LI
Sbjct: 360 AKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILI 419

Query: 417 QGYCKEGKI 425
            G+CK+G++
Sbjct: 420 NGFCKQGRL 428


>gi|302763305|ref|XP_002965074.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
 gi|300167307|gb|EFJ33912.1| hypothetical protein SELMODRAFT_83127 [Selaginella moellendorffii]
          Length = 484

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 188/412 (45%), Gaps = 53/412 (12%)

Query: 65  IPSFN--FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           + SFN  F +P      +++  ++ L+ +FF W     G+  D+     L   LV AR  
Sbjct: 1   MASFNAAFLEPRLVGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRT 60

Query: 123 KVAMDF--------------------------------------LDSTGFSPNPNSLELY 144
           + A+ F                                      + S G  P+  +  + 
Sbjct: 61  REAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVV 120

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD----LVWKLYHDLI 200
           ++  C+ G +  A   F K+ +     ++ T+N+ + G  K  + D    L  +L HDL+
Sbjct: 121 LKGYCDLGRVGRALIKFGKMGKT-CKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLV 179

Query: 201 E-SGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           +  G+    L+   C   ++    ++   +LE     +  A+N +   FC+++      E
Sbjct: 180 DPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALE 239

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +L TM+ R   P   TY  +ING+C+ + R+E AYR+F  +      P+ V Y T+I GL
Sbjct: 240 VLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL 299

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K+  +    +++  M   GL P+ Y Y+S+I+ + ++  L+EAK + ++      G   
Sbjct: 300 SKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDV 359

Query: 375 VTYNTLIAGLC--LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             Y TLI+G C     R DEA  LF+ M  + ++ +VITYN +++G CK G+
Sbjct: 360 YMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGR 411



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/363 (23%), Positives = 149/363 (41%), Gaps = 50/363 (13%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCL 148
           R+  ++ S  G  PD+ + NV+     +      A+      G +  PN  +    I  L
Sbjct: 100 RYLGYMRS-LGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGL 158

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C+ G I+ A   F++L    V     T+++ + G  + +R +   K+Y  ++E+ Y    
Sbjct: 159 CKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDA 218

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN---------- 249
                +   FC + +V E  E+L+ +++    P    +N +I+  C+ KN          
Sbjct: 219 GAYNAMADGFCKERRVDEALEVLKTMIQRRCKPSVVTYNCIINGVCQYKNRIEEAYRLFQ 278

Query: 250 -------------FG-------------RVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
                        +G             R  EL   M     +PD + Y  +I    K R
Sbjct: 279 QMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVR 338

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM--GWLGDARKMWFEMIHKGLLPNEYT 341
           K  EA  +  D       PD  MYTT+I G C+     + +A  ++  M  + + PN  T
Sbjct: 339 KLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVIT 398

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN ++ G C+    +EA ++ +EM         +T+  +  G+    +TD+   +F +M 
Sbjct: 399 YNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCRKTDKFERIFMDMV 458

Query: 402 QKG 404
            KG
Sbjct: 459 YKG 461



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 73/158 (46%), Gaps = 1/158 (0%)

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D + Y  +++ L ++R+  EA R F         P    +T +I   C +   G A +  
Sbjct: 43  DVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYL 102

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G+ P+   YN ++ GYC +  +  A     +M  K       TYNT+I GLC  
Sbjct: 103 GYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKM-GKTCKPNVATYNTVINGLCKF 161

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+ D A HLF  +    +  D  TY+TL+ G C+  ++
Sbjct: 162 GKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERL 199



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 59/130 (45%), Gaps = 1/130 (0%)

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           K+ GY  D   YT ++H L +     +A + +   +     P+ Y++  +I  +C + N 
Sbjct: 36  KQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNP 95

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
             A R    M   G       YN ++ G C  GR   A   F +M  K    +V TYNT+
Sbjct: 96  GRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMG-KTCKPNVATYNTV 154

Query: 416 IQGYCKEGKI 425
           I G CK GKI
Sbjct: 155 INGLCKFGKI 164


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A       KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECXRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +FC +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVD 364


>gi|255584017|ref|XP_002532754.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527505|gb|EEF29631.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 721

 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/364 (29%), Positives = 179/364 (49%), Gaps = 23/364 (6%)

Query: 70  FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL 129
            N  L FR F    N+VLL    F  + S     PD+   + +  SL E + F  A + +
Sbjct: 103 LNGLLRFRRF----NDVLL---LFDDIVSA-NVQPDIYIYSAVVRSLCELKDFNKAKEMI 154

Query: 130 DSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
               F+    S+ +Y   I  LC+S  I EA    + L + G+  ++ T+        K 
Sbjct: 155 HWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNCLMQKGLEANVVTYYG------KF 208

Query: 187 DRTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           +  +L++K      L  + I    LI +FC  G++      L ++ +  +      +N L
Sbjct: 209 NEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSL 268

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+ +C+  N          M+ +   P   TY  +I+G C   +  +A++V+N++  +G 
Sbjct: 269 INGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGI 328

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+T  +T +I GLC+   + +A +++ EM  + ++P+E TYN MI G+CR  N+ EA  
Sbjct: 329 SPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFH 388

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  EM+ KG+   T TY  LI+GLC  GR  EA    +++ +     + + Y+ L+ GYC
Sbjct: 389 LLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYC 448

Query: 421 KEGK 424
           KEG+
Sbjct: 449 KEGR 452



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 114/407 (28%), Positives = 173/407 (42%), Gaps = 32/407 (7%)

Query: 31  IETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQ-NNVLLS 89
           I+ KE  Q  + +      I R K  W            FNDP   R       + VL+ 
Sbjct: 32  IQDKEDFQFISILTS----ILRGKQSWR---------IAFNDPFISRNLKPSHVDKVLMM 78

Query: 90  IRFF-QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           +      L       P++ + + L + L+  R F   +   D   S    P+       +
Sbjct: 79  LSLNDSRLMKDCNLMPEVRTLSALLNGLLRFRRFNDVLLLFDDIVSANVQPDIYIYSAVV 138

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFG-------SIKTWNSALLGCIKIDRTDLVWKLYHD 198
           + LCE          F+K KEM  +        SI  +N  + G  K  R     ++ + 
Sbjct: 139 RSLCE-------LKDFNKAKEMIHWMEFNQCKLSIVVYNVLIHGLCKSRRIWEALEIKNC 191

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           L++ G         GK +E   L +++ E GL   +  ++ LI  FC +         L 
Sbjct: 192 LMQKGLEANVVTYYGKFNEAELLFKEMGEKGLCANHITYSILIDSFCRRGEMDNAIGFLD 251

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M   +     + Y  +ING CK      A   F+++ ++G  P  V YT++I G C  G
Sbjct: 252 KMTKASIEFTVYPYNSLINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEG 311

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A K++ EM  KG+ PN YT+ ++I G CR + + EA RL  EM ++    + VTYN
Sbjct: 312 EWHKAFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYN 371

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +I G C  G   EA+HL +EM  KG   D  TY  LI G C  G++
Sbjct: 372 VMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRV 418



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 161/373 (43%), Gaps = 50/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P +V+   L           +AFKV  + + + G SPN  +    I  LC + ++ E
Sbjct: 292 GLTPTVVTYTSLISGYCNEGEWHKAFKVYNE-MTAKGISPNTYTFTAIISGLCRANMMAE 350

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F ++KE  +  S  T+N  + G  +       + L  +++  G+         LI 
Sbjct: 351 AIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLIS 410

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ G+VSE  E +  + +D     N  ++ L+  +C++  F         MV R  A 
Sbjct: 411 GLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAM 470

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I+G  +       + +  ++   G  PD V+YT +I    K G L +A  +W
Sbjct: 471 DLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEAFGLW 530

Query: 328 FEMIHKGLLPNEYTYNSMIHGYC-----------------------------------RI 352
             M+ +G LPN  TY ++I+G C                                   R 
Sbjct: 531 DIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDHLTRG 590

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N+E+A +LH  ML KG+  TTV+YN LI G C  G+ +EA  L   M    I  D ITY
Sbjct: 591 GNMEKAVQLHHAML-KGFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPDYITY 649

Query: 413 NTLIQGYCKEGKI 425
           +T+I   CK   +
Sbjct: 650 STIIYEQCKRSNL 662



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/290 (25%), Positives = 133/290 (45%), Gaps = 26/290 (8%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G   N  +  + I   C  G ++ A     K+ +  +  ++  +NS              
Sbjct: 222 GLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNS-------------- 267

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                       LI  +C  G  S       ++++ GL P    +  LIS +C +  + +
Sbjct: 268 ------------LINGYCKLGNASAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHK 315

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             ++ + M A+  +P+ +T+  +I+GLC++    EA R+F ++KER  +P  V Y  +I 
Sbjct: 316 AFKVYNEMTAKGISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIE 375

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C+ G + +A  +  EM+ KG +P+ YTY  +I G C +  + EAK    ++    +  
Sbjct: 376 GHCRSGNISEAFHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKL 435

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             + Y+ L+ G C  GR  +A      M ++G+  D++ Y  LI G  +E
Sbjct: 436 NNMCYSALVHGYCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTARE 485



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 146/338 (43%), Gaps = 18/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD-----STGFSPNP-NSLELYIQCLCESGLI 154
           G   + ++ ++L DS         A+ FLD     S  F+  P NSL   I   C+ G  
Sbjct: 222 GLCANHITYSILIDSFCRRGEMDNAIGFLDKMTKASIEFTVYPYNSL---INGYCKLGNA 278

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
             A   F ++ + G+  ++ T+ S + G          +K+Y+++   G          +
Sbjct: 279 SAAKYYFDEMIDKGLTPTVVTYTSLISGYCNEGEWHKAFKVYNEMTAKGISPNTYTFTAI 338

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C    ++E   L  ++ E  ++P    +N +I   C   N      LL  MV +  
Sbjct: 339 ISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEAFHLLDEMVGKGF 398

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD +TY  +I+GLC   +  EA    +DL +  +  + + Y+ ++HG CK G   DA  
Sbjct: 399 VPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHGYCKEGRFKDAVS 458

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
               M+ +G+  +   Y  +I G  R  +      L KEM + G     V Y  +I    
Sbjct: 459 ACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHS 518

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             G   EA+ L++ M  +G   +V+TY  LI G CK G
Sbjct: 519 KAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAG 556



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/392 (23%), Positives = 156/392 (39%), Gaps = 81/392 (20%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  +   +   L  A     A+     +      P+  +  + I+  C SG I EA
Sbjct: 327 GISPNTYTFTAIISGLCRANMMAEAIRLFGEMKERKIMPSEVTYNVMIEGHCRSGNISEA 386

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-------DLVWKLYHDLIESGY--LIQA 208
           F    ++   G      T+   + G   + R        D + K +H L    Y  L+  
Sbjct: 387 FHLLDEMVGKGFVPDTYTYRPLISGLCSVGRVSEAKEFVDDLHKDHHKLNNMCYSALVHG 446

Query: 209 FCNDGKVSEG-----------------------------------YELLRQVLEDGLVPE 233
           +C +G+  +                                    + LL+++   GL P+
Sbjct: 447 YCKEGRFKDAVSACRVMVERGVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPD 506

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----------SR 283
              +  +I R  +  N      L   MV     P+  TY  +INGLCK          S+
Sbjct: 507 AVIYTNMIDRHSKAGNLKEAFGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSK 566

Query: 284 KRLEA--------YRVFNDLKERG----------------YVPDTVMYTTVIHGLCKMGW 319
           + L +        Y  F D   RG                ++  TV Y  +I G C++G 
Sbjct: 567 ETLVSDVTPNHITYGCFLDHLTRGGNMEKAVQLHHAMLKGFLATTVSYNILIRGFCRLGK 626

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A K+   M    +LP+  TY+++I+  C+  NL+EA +L   MLDKG    T+ Y+ 
Sbjct: 627 IEEATKLLHGMTDNDILPDYITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSF 686

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           L+ G C+ G  ++A+ L +EM ++G+  + +T
Sbjct: 687 LVHGCCIAGELEKAFELRDEMIRRGMRSNHVT 718



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 66/256 (25%), Positives = 118/256 (46%), Gaps = 13/256 (5%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G + DLV   +L D      + RA    +  + + G  P+       I    ++G ++EA
Sbjct: 467 GVAMDLVCYAILIDGTAREHDTRALFGLLKEMHNHGLRPDAVIYTNMIDRHSKAGNLKEA 526

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWK--LYHDL----IESGYLIQA 208
           F  +  + + G   ++ T+ + + G  K   +D+ +L+ K  L  D+    I  G  +  
Sbjct: 527 FGLWDIMVDEGCLPNVVTYTALINGLCKAGLMDKAELLSKETLVSDVTPNHITYGCFLDH 586

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G + +  +L   +L+ G +    ++N LI  FC        ++LLH M   +  PD
Sbjct: 587 LTRGGNMEKAVQLHHAMLK-GFLATTVSYNILIRGFCRLGKIEEATKLLHGMTDNDILPD 645

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I   CK     EA ++++ + ++G  PDT+ Y+ ++HG C  G L  A ++  
Sbjct: 646 YITYSTIIYEQCKRSNLQEAIKLWHTMLDKGLKPDTLAYSFLVHGCCIAGELEKAFELRD 705

Query: 329 EMIHKGLLPNEYTYNS 344
           EMI +G+  N  T  S
Sbjct: 706 EMIRRGMRSNHVTPKS 721



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 19/200 (9%)

Query: 236 AFNK-LISRFCEKKNFGRVSELLHTMVAR-----NRAPDNFTYEEVINGLCKSRKRLEAY 289
           AFN   ISR  +  +  +V  +L    +R     N  P+  T   ++NGL + R+  +  
Sbjct: 57  AFNDPFISRNLKPSHVDKVLMMLSLNDSRLMKDCNLMPEVRTLSALLNGLLRFRRFNDVL 116

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM--WFEMIHKGLLPNEYTYNSMIH 347
            +F+D+      PD  +Y+ V+  LC++     A++M  W E     L  +   YN +IH
Sbjct: 117 LLFDDIVSANVQPDIYIYSAVVRSLCELKDFNKAKEMIHWMEFNQCKL--SIVVYNVLIH 174

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G C+   + EA  +   ++ KG     VTY         +G+ +EA  LF+EM +KG+  
Sbjct: 175 GLCKSRRIWEALEIKNCLMQKGLEANVVTY---------YGKFNEAELLFKEMGEKGLCA 225

Query: 408 DVITYNTLIQGYCKEGKIVN 427
           + ITY+ LI  +C+ G++ N
Sbjct: 226 NHITYSILIDSFCRRGEMDN 245


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/412 (25%), Positives = 188/412 (45%), Gaps = 53/412 (12%)

Query: 65  IPSFN--FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           + SFN  F +P      +++  ++ L+ +FF W     G+  D+     L   LV AR  
Sbjct: 1   MASFNAAFLEPRLVGSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRT 60

Query: 123 KVAMDF--------------------------------------LDSTGFSPNPNSLELY 144
           + A+ F                                      + S G  P+  +  + 
Sbjct: 61  REAVRFFKRELCAHCRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVV 120

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD----LVWKLYHDLI 200
           ++  C+ G +  A   F K+ +     ++ T+N+ + G  K  + D    L  +L HDL+
Sbjct: 121 LKGYCDLGRVGRALIKFGKMGKT-CKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLV 179

Query: 201 E-SGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           +  G+    L+   C   ++    ++   +LE     +  A+N +   FC+++      E
Sbjct: 180 DPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALE 239

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +L TM+ R   P   TY  +ING+C+ + R+E AYR+F  +      P+ V Y T+I GL
Sbjct: 240 VLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGL 299

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K+  +    +++  M   GL P+ Y Y+S+I+ + ++  L+EAK + ++      G   
Sbjct: 300 SKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDV 359

Query: 375 VTYNTLIAGLC--LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             Y TLI+G C     R DEA  LF+ M  + ++ +VITYN +++G CK G+
Sbjct: 360 YMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGR 411



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 151/363 (41%), Gaps = 50/363 (13%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCL 148
           R+  ++ S  G  PD+ + NV+     +      A+      G +  PN  +    I  L
Sbjct: 100 RYLGYMRS-LGIPPDVTAYNVVLKGYCDLGRVGRALIKFGKMGKTCKPNVATYNTVINGL 158

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C+ G I+ A   F++L    V     T+++ + G  + +R +   K+Y  ++E+ Y    
Sbjct: 159 CKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKVYDMMLEANYDGDA 218

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN---------- 249
                +   FC + +V E  E+L+ +++ G  P    +N +I+  C+ KN          
Sbjct: 219 GAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQ 278

Query: 250 -------------FG-------------RVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
                        +G             R  EL   M     +PD + Y  +I    K R
Sbjct: 279 QMVGSDCPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVR 338

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM--GWLGDARKMWFEMIHKGLLPNEYT 341
           K  EA  +  D       PD  MYTT+I G C+     + +A  ++  M  + + PN  T
Sbjct: 339 KLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVIT 398

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN ++ G C+    +EA ++ +EM         +T+  +  G+   G+TD+   +F +M 
Sbjct: 399 YNIVLRGLCKTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMV 458

Query: 402 QKG 404
            KG
Sbjct: 459 YKG 461


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/272 (31%), Positives = 136/272 (50%), Gaps = 9/272 (3%)

Query: 163 KLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDG 213
           ++KE G+  +++ +N+ +    K         + + ++ S +         LI AFC +G
Sbjct: 371 EMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREG 430

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
            V E  +LLR+ +   L P   ++  LI  FC +      S+LL  M+ R   PD  T  
Sbjct: 431 DVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLG 490

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+GL  S +  EA  V   + ER  +PD  +Y  +I GLCK   L  A+ +  EM+ +
Sbjct: 491 ALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQ 550

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
            + P+++ Y ++I G+ R D L +A+++ + M +KG     V YN +I G C  G  +EA
Sbjct: 551 KVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEA 610

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 M + G   D  TY TLI GY K+G I
Sbjct: 611 VMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDI 642



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 96/353 (27%), Positives = 167/353 (47%), Gaps = 12/353 (3%)

Query: 87  LLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLEL 143
           L  I    W     G SP++   N +  +L + R+   A+  L+   ++ F P+  +   
Sbjct: 362 LTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNT 421

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIK---IDRTDLVWKLYH-- 197
            I   C  G +EEA     +     +  +  ++   + G C++   +  +DL+ ++    
Sbjct: 422 LIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRG 481

Query: 198 ---DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
              D++  G LI      G+V E   +  ++ E  ++P+   +N LIS  C+K+      
Sbjct: 482 HTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAK 541

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LL  M+ +   PD F Y  +I+G  +S K  +A ++F  ++E+G   D V Y  +I G 
Sbjct: 542 NLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGY 601

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G + +A      M   G +P+E+TY ++I GY +  +++ A R   +M+ +      
Sbjct: 602 CKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNI 661

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           VTY +LI G C  G TD A  LF  M  +G+F +V+ Y  LI    K+ K + 
Sbjct: 662 VTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQ 714



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 110/218 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +C  G V  G  LL ++   G++P    +  +I     K +  ++  LL  M  R 
Sbjct: 317 LIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERG 376

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +P+   Y  VI  LCK R   +A  V N +    + PD V + T+I   C+ G + +A 
Sbjct: 377 LSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEAL 436

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+  E I + L PN+ +Y  +IHG+C    +  A  L  EM+ +G+    VT   LI GL
Sbjct: 437 KLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGL 496

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            + G+ DEA  + E+MA++ +  D   YN LI G CK+
Sbjct: 497 VVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKK 534



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 80/351 (22%), Positives = 145/351 (41%), Gaps = 27/351 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+   L   LV +     A+   + +      P+ N   + I  LC+  ++  A
Sbjct: 481 GHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAA 540

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGYLIQA 208
                ++ E  V      + + + G I+ D+     K+         Y D++    +I+ 
Sbjct: 541 KNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKG 600

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G ++E    +  + + G +P+   +  LI  + +K +       L  M+ R   P+
Sbjct: 601 YCKSGMMNEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPN 660

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C       A  +F  ++  G  P+ V YT +I  L K      A   + 
Sbjct: 661 IVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFE 720

Query: 329 EMIHKGLLPNEYTYNSMIHGY--CRI----DNLEEAKRLHKE---------MLDKGYGET 373
            M+     PN+ T + +++G   CR      N  +  + HK+         ++  G    
Sbjct: 721 HMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPR 780

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              YN +I  LC H    +A  L E+M+ KG   D +T+ +L+ G+   GK
Sbjct: 781 ISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGK 831



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 50/179 (27%), Positives = 87/179 (48%), Gaps = 3/179 (1%)

Query: 251 GRVSELLHTMVAR---NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           GRV E    + AR      P    Y  +I+G C+         +  +++ +G +P  V Y
Sbjct: 290 GRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTY 349

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             +IH L +   L     + +EM  +GL PN   YN++I+  C+  +  +A  +  +M+ 
Sbjct: 350 GAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVA 409

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +    VT+NTLIA  C  G  +EA  L  E  ++ +  + ++Y  LI G+C  G+++
Sbjct: 410 SRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVM 468


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  F  +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM+ KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364


>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 533

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 171/349 (48%), Gaps = 15/349 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELY 144
           S+R F  +   +G    + S N L + L++ + F +         +S G +PN  +  L 
Sbjct: 137 SMRIFLRI-PDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLL 195

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           ++ LC+   IE A+    ++  MG+  ++ T+ + L G +     +   ++  ++++ G+
Sbjct: 196 VKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGW 255

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G+ SE   ++  + ++ + P    +  +I   C++K  G    
Sbjct: 256 YPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARN 315

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   M+ R+  PD+    +VI+ LC+  K  EA  ++  + +   +PD  + +T+IH LC
Sbjct: 316 MFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLC 375

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + +ARK+ F+   KG +P+  TYN++I G C    L EA RL  +M ++       
Sbjct: 376 KEGRVSEARKL-FDEFDKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAF 434

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TYN LI GL  +G   E   + EEM + G F +  T+  L +G  K GK
Sbjct: 435 TYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGK 483



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 186/410 (45%), Gaps = 30/410 (7%)

Query: 36  SQQLYTEIA---KQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           S++L++  A   +Q C    T   W Q L           P      + QQ N+ L+++ 
Sbjct: 17  SRRLFSASAASLQQYCTEKPTIKPWPQRLF----------PKRLVSMITQQQNIDLALQI 66

Query: 93  FQWL-HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS--TGFSPNPNSLELYIQCLC 149
           F +   SH GF+ +  + + +   L  ARAF      +      + P      L+I  L 
Sbjct: 67  FLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMADLRNSYPPIKCGENLFIDLLR 126

Query: 150 ESGLI---EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---- 202
             GL    E +   F ++ + GV  S+++ N+ L   I+  R DLV  ++ +  ES    
Sbjct: 127 NYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGIT 186

Query: 203 ------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L++A C    +   Y++L ++   GLVP    +  ++  +  + +      +
Sbjct: 187 PNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGLVPNLVTYTTILGGYVARGDMESAKRV 246

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M+ R   PD  TY  +++G CK  +  EA  V +D+++    P+ V Y  +I  LCK
Sbjct: 247 LEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCK 306

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
               G+AR M+ EM+ +  +P+      +I   C    ++EA  L ++ML          
Sbjct: 307 EKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNAL 366

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +TLI  LC  GR  EA  LF+E   KG    ++TYNTLI G C++G++ 
Sbjct: 367 LSTLIHWLCKEGRVSEARKLFDEF-DKGSIPSLLTYNTLIAGMCEKGELT 415



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 156/339 (46%), Gaps = 20/339 (5%)

Query: 85  NVLLSIRFFQWLHS-------HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGF 134
           NVL+  + F  +H+        +G +P++ +CN+L  +L +    + A   LD   + G 
Sbjct: 161 NVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPAMGL 220

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            PN  +    +      G +E A     ++ + G +    T+   + G  K+ R      
Sbjct: 221 VPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCKLGRFSEAAT 280

Query: 195 LYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +  D+         +  G +I+A C + K  E   +  ++L+   +P+++   K+I   C
Sbjct: 281 VMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLDRSFMPDSSLCCKVIDALC 340

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           E         L   M+  N  PDN     +I+ LCK  +  EA ++F++  ++G +P  +
Sbjct: 341 EDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVSEARKLFDEF-DKGSIPSLL 399

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T+I G+C+ G L +A ++W +M  +   PN +TYN +I G  +  N++E  R+ +EM
Sbjct: 400 TYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEM 459

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           L+ G      T+  L  GL   G+ ++A  +       G
Sbjct: 460 LESGCFPNKTTFLILFEGLQKLGKEEDAIKIVSMAVMNG 498



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 103/251 (41%), Gaps = 13/251 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++  VL D   +   F  A   MD ++     PN  +  + I+ LC+     EA
Sbjct: 254 GWYPDAITYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEA 313

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F ++ +             +    +  + D    L+  ++++           LI  
Sbjct: 314 RNMFDEMLDRSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHW 373

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+VSE  +L  +  + G +P    +N LI+  CEK        L   M  R   P+
Sbjct: 374 LCKEGRVSEARKLFDE-FDKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPN 432

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I GL K+    E  RV  ++ E G  P+   +  +  GL K+G   DA K+  
Sbjct: 433 AFTYNVLIEGLSKNGNVKEGVRVLEEMLESGCFPNKTTFLILFEGLQKLGKEEDAIKIVS 492

Query: 329 EMIHKGLLPNE 339
             +  G +  E
Sbjct: 493 MAVMNGKVDKE 503


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 97/333 (29%), Positives = 158/333 (47%), Gaps = 12/333 (3%)

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNS 140
           N + L+  +F+ +    G  PD V+  VL  SL +A  ++      +   S G SP   +
Sbjct: 63  NKLDLAASYFEQM-VQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVT 121

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---- 196
               +   C++G I++A     +LK  G   S   +++ + G  K DR +   +L+    
Sbjct: 122 YATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMAA 181

Query: 197 ---HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
               D+I     I   C  GK+ E   +  +++E G  P+  ++N +I   C+       
Sbjct: 182 GDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEA 241

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIH 312
            EL+   + R   P       +++GLCKSR+  EA  +   + E G   P  V Y+ VI 
Sbjct: 242 KELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVID 301

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GLCK   L DA  +  +M   G +P+  TY ++I  +C++  L+EA+ L + M ++G   
Sbjct: 302 GLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCAS 361

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
             V YN LI G C   + DEA  + EEMA +GI
Sbjct: 362 DVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 106/376 (28%), Positives = 174/376 (46%), Gaps = 34/376 (9%)

Query: 18  NFQNPNTQL--RNLSIETKESQQLYTEIAKQVCKITR---TKPRWEQTL----LSDIPSF 68
           NF N   Q+  + + ++ K    LYT +   +CKI +       +EQ +    L D  ++
Sbjct: 28  NFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTY 87

Query: 69  NFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF 128
                  F+    +Q +     + F+ + S  G SP+LV+   + +   +A     A+  
Sbjct: 88  TVLVHSLFKACKWEQGH-----QIFEEMLSK-GHSPELVTYATVVNGYCKAGRIDQALSL 141

Query: 129 ---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM--GVFGSIKTWNSALLGC 183
              L  TG SP+ +     I  LC+    EEA     +L EM  G    +  + S + G 
Sbjct: 142 MRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEA----RELFEMAAGDVQDVIVYTSFISGL 197

Query: 184 IKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            K  + D    ++  +IE+G          +I + C D +VSE  EL+ Q +E   +P  
Sbjct: 198 CKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGV 257

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMV-ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                L+   C+ +       +L  M+ A +RAP   TY  VI+GLCK+ +  +AY V  
Sbjct: 258 PVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQ 317

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            ++  G VPD V YT +I   CK+G L +AR+++  M  +G   +   YN +I GYCR  
Sbjct: 318 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAA 377

Query: 354 NLEEAKRLHKEMLDKG 369
            ++EA  + +EM  +G
Sbjct: 378 KVDEAIAMIEEMAGRG 393



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 104/205 (50%), Gaps = 2/205 (0%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LL ++   G+ P    F  LI + CE     +  ++ H M+     PD F Y  VI  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  K   A   F  + + G +PD V YT ++H L K        +++ EM+ KG  P   
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY ++++GYC+   +++A  L + +   G   +   Y+TLI GLC H R +EA  LFE  
Sbjct: 121 TYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFEMA 180

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
           A  G  +DVI Y + I G CK GK+
Sbjct: 181 A--GDVQDVIVYTSFISGLCKAGKL 203



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 114/227 (50%), Gaps = 2/227 (0%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++  G LI+  C     ++  ++  Q+++  + P+   +  +I   C+       +    
Sbjct: 14  IVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFE 73

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            MV     PD  TY  +++ L K+ K  + +++F ++  +G+ P+ V Y TV++G CK G
Sbjct: 74  QMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAG 133

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A  +   +   G  P+   Y+++I G C+ D  EEA+ L +  +  G  +  + Y 
Sbjct: 134 RIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEARELFE--MAAGDVQDVIVYT 191

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + I+GLC  G+ DEA  +  +M + G   D ++YN +I   CK+ ++
Sbjct: 192 SFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRV 238


>gi|147819071|emb|CAN69810.1| hypothetical protein VITISV_043106 [Vitis vinifera]
          Length = 847

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/382 (27%), Positives = 175/382 (45%), Gaps = 29/382 (7%)

Query: 72  DP-LFFREFLKQQNNVLLSIRFFQWLHSHYGFS-PDLVSCNVL---------------FD 114
           DP LF R     + +  +++R F+W  S  GF   + V C +L                +
Sbjct: 386 DPDLFVRVLSSFRTSPRMALRLFRWAESQPGFRRSEFVFCAILEILAQNNLMRSAYWVME 445

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNS--LELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
            ++ A   ++ +D L     S   +   L+L I    +  ++E+    F K+ +  +   
Sbjct: 446 RVINANMHRI-VDVLIGGCVSSEVSVKILDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPD 504

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
           +K  N  L      D      ++Y  + E G          L+ ++C  GKV +G +LL 
Sbjct: 505 VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLS 564

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++   G  P +  +N LI+   +K  F +   L+  M+        +TY  +I G     
Sbjct: 565 EMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKG 624

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
              EA  +  ++  +G  P    Y + I+GLCK+G + DA +   +M+   LLP+  +YN
Sbjct: 625 LLAEALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYN 684

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++I+GYCR+ NL +A  L  E+       T VTYNTL+ GLC  G  + A  L  EM  +
Sbjct: 685 TLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINE 744

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           GI  D++TY  L+ G CK G +
Sbjct: 745 GIAPDIVTYTILVNGSCKMGSL 766



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 151/329 (45%), Gaps = 29/329 (8%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  P +V+ N L DS  +    +  +D L      G +PN  +  + I  L + G  E+
Sbjct: 534 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQ 593

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     ++ + G+  S  T+N                           LI  + N G ++
Sbjct: 594 AKGLIGEMLKTGLKVSAYTYNP--------------------------LIYGYFNKGLLA 627

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   L  +++  G  P    +N  I   C+        + L  M+A N  PD  +Y  +I
Sbjct: 628 EALSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLI 687

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            G C+    ++A+ +F++L+     P  V Y T++ GLC+ G L  A+++  EMI++G+ 
Sbjct: 688 YGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIA 747

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  TY  +++G C++ +L  A+    EML +G    +  Y T I G    G T  A+ L
Sbjct: 748 PDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSL 807

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EEM  KG   D+I YN ++ G CK G +
Sbjct: 808 QEEMLAKGFPPDLIIYNVVVDGLCKLGNL 836



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/222 (31%), Positives = 112/222 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +     V +   +  ++++  L P+    N+++    +K    +  E+  TM    
Sbjct: 476 LIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGEFG 535

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   TY  +++  CK  K  +   + ++++ RG  P+ V Y  +I+GL K G    A+
Sbjct: 536 IKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAK 595

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM+  GL  + YTYN +I+GY     L EA  L +EM+ KG   T  TYN+ I GL
Sbjct: 596 GLIGEMLKTGLKVSAYTYNPLIYGYFNKGLLAEALSLQEEMVLKGASPTVATYNSFIYGL 655

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C  GR  +A     +M    +  DV++YNTLI GYC+ G ++
Sbjct: 656 CKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLM 697


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +   L   L        A+D  D     GF PN  +    +  LC+   + EA
Sbjct: 121 GHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEA 180

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              FS++   G+   I T+NS +     +     V  L +++++S           ++ A
Sbjct: 181 LNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDA 240

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV+E ++++  +++ G+ P+   +  L+   C +       ++   MV      +
Sbjct: 241 LCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCN 300

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK ++  +A  +F ++  +  +P+T+ Y+T+IHGLC +G L DA  ++ 
Sbjct: 301 VVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFN 360

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +PN  TY+ ++   C+   L EA  L K +           YN  I G+C  G
Sbjct: 361 EMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAG 420

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + A  LF  +A +G+  DV T+N +I+G CK G
Sbjct: 421 DLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRG 455



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/346 (26%), Positives = 166/346 (47%), Gaps = 14/346 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F + LH H    P +     L  S+ + + +   +     +DS G  P+  +L + I   
Sbjct: 44  FHRMLHMHP--PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSF 101

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C    ++ A    +K+ ++G      T+ + + G   + +      ++  ++  G+    
Sbjct: 102 CHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNV 161

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+   C D +++E   L  +++  G+ P+   +N LI   C    +  V+ LL+ 
Sbjct: 162 VTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNE 221

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P+  +   V++ LCK  K  EA+ V + + + G  PD V Y  ++ G C    
Sbjct: 222 MVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSE 281

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A K++  M+  G + N  +YN++I+GYC+I  +++A  L +EM  +     T+TY+T
Sbjct: 282 MDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI GLC  GR  +A  LF EM   G   +++TY+ L+   CK  ++
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRL 387



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 157/338 (46%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  PD+ +  ++ +S         A+  L      G  P+  +    ++ LC  G I E
Sbjct: 85  FGIPPDVYTLTIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGE 144

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F K+   G   ++ T+ + + G  K  +      L+ ++I  G          LI 
Sbjct: 145 ALDVFDKMVGEGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIH 204

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A CN  +      LL ++++  ++P   + N ++   C++       +++  M+     P
Sbjct: 205 ALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEP 264

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +++G C   +  EA +VF+ +   G V + V Y T+I+G CK+  +  A  ++
Sbjct: 265 DVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLF 324

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  + L+PN  TY+++IHG C +  L++A  L  EM+  G     VTY+ L+  LC +
Sbjct: 325 EEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKN 384

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            R  EA  L + +    +  DV  YN  I G C+ G +
Sbjct: 385 HRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDL 422



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 153/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+ + N L  +L     +K     L+    +   PN  SL + +  LC+ G + EA
Sbjct: 191 GISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEA 250

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + + GV   + T+ + + G       D   K++  ++ +G          LI  
Sbjct: 251 HDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLING 310

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +   L  ++    L+P    ++ LI   C          L + MVA  + P+
Sbjct: 311 YCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPN 370

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+ +  EA  +   ++     PD  +Y   I G+C+ G L  AR ++ 
Sbjct: 371 LVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFS 430

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +  +GL P+ +T+N MI G C+   L+EA +L +EM + G      TYNT+  GL  + 
Sbjct: 431 NLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGLLQNN 490

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +T  A  L EEM  +G   DV T   L++    +G
Sbjct: 491 KTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDG 525



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 44/106 (41%)

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L DA   +  M+H    P  + +  ++    ++ +      L K+M   G      T   
Sbjct: 37  LDDALSSFHRMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTI 96

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +I   C   R D A  +  ++ + G   D  T+ TL++G C  GKI
Sbjct: 97  VINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKI 142


>gi|357115900|ref|XP_003559723.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like, partial [Brachypodium distachyon]
          Length = 907

 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 176/373 (47%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G    L SCN L + LV+A     A+     +   G  P+  ++ +  +  C  G +  A
Sbjct: 124 GSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCAGTLPDDFTVAIMAKAYCRDGRVAHA 183

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++EMG+  ++  +++ + G  +I +T++  KL H L   G          L++ 
Sbjct: 184 ADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVARKLLHSLQVKGLSPNVVTYTLLVKG 243

Query: 209 FCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNF----------------- 250
           +C +G++ E  ++++++ E + +V +  A+  LI+ +C++                    
Sbjct: 244 YCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMEDANRVRDEMIDAGVQV 303

Query: 251 ------------------GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
                             G V +LL     R    D ++Y  +++G C+     +A+   
Sbjct: 304 NMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVDGYCRKGFMTKAFETC 363

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + +   G+   T+ Y T+++G C  G + DA K+WF M+ +G++PNE + ++++ G+ + 
Sbjct: 364 DMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVPNEISCSTLLDGFFKA 423

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              E+A  L KE L +G     VT NT+I GLC + R  EA  LF  M +     D +TY
Sbjct: 424 GKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELFHRMKEWSCPCDSLTY 483

Query: 413 NTLIQGYCKEGKI 425
            TLI GYCK G +
Sbjct: 484 RTLIDGYCKLGDL 496



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/396 (27%), Positives = 174/396 (43%), Gaps = 73/396 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ +SC+ L D   +A   + A++    T   G + N  ++   I  LC++  + EA
Sbjct: 405 GVVPNEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEA 464

Query: 158 FCAFSKLKE-----------------------------------MGVFGSIKTWNSALLG 182
              F ++KE                                   +G   S++ +NS + G
Sbjct: 465 EELFHRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITG 524

Query: 183 CI------KID--RTDLVWK-LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                   K++  R ++  K L  + +  G LI  +C +G + +   L  +++E GL P 
Sbjct: 525 LFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPN 584

Query: 234 NTAFNKLISRF------------------------CEKK--NFGRVSELLHTMVARNRAP 267
               + L+S F                        C     N G+V+ ++ ++   N   
Sbjct: 585 LFICSVLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIGKVAHIIESLAGGNHQS 644

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
               +  VI GLCK  +  +A  +F DLK +G++PD   Y+++IHG    G +  A  + 
Sbjct: 645 AKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLR 704

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+   L PN  TYNS+I+G C+  N+  A  L  ++  KG     +TYNTLI G C  
Sbjct: 705 DEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKD 764

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G T EA+ L ++M ++GI   V TY  LI G C +G
Sbjct: 765 GNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQG 800



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 153/332 (46%), Gaps = 11/332 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +   N     L  A+      D    + + G SPN  +    I   C+ G + +A
Sbjct: 510 GFVPSVEMFNSFITGLFIAKQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDA 569

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
              + ++ E G+  ++    S L+ C     K+D  +LV +   D         +  N G
Sbjct: 570 CILYFEMVEKGLKPNLFIC-SVLVSCFYREGKVDEANLVLQKLADTDMIQDCSASTLNIG 628

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           KV+    ++  +           +N +I   C+         L   +  +   PDNFTY 
Sbjct: 629 KVAH---IIESLAGGNHQSAKIMWNIVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYS 685

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+G   S     A+ + +++      P+ V Y ++I+GLCK   +  A  ++ ++  K
Sbjct: 686 SLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSK 745

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G+ PN  TYN++I G+C+  N  EA +L ++M+ +G   T  TY  LI GLC  G  +EA
Sbjct: 746 GISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEA 805

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             L ++M +  +  + ITY TLIQGY + G +
Sbjct: 806 IKLLDQMIENNVDPNFITYWTLIQGYARCGNM 837



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 164/373 (43%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLV-EAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP++V+  +L      E R   A KV  +  ++     +  +    I   C+ G +E+
Sbjct: 229 GLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALINGYCQRGRMED 288

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------DLIESGY--LIQ 207
           A     ++ + GV  ++  +N+ + G  K+ R   V KL         +L E  Y  L+ 
Sbjct: 289 ANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRMGEVEKLLQANEYRGVNLDEYSYNTLVD 348

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G +++ +E    ++ +G       +N L++ FC +       +L   M+ R   P
Sbjct: 349 GYCRKGFMTKAFETCDMMVRNGFTGTTLTYNTLLNGFCSRGAIDDALKLWFLMLKRGVVP 408

Query: 268 ---------DNF--------------------------TYEEVINGLCKSRKRLEAYRVF 292
                    D F                          T   VINGLCK+R+  EA  +F
Sbjct: 409 NEISCSTLLDGFFKAGKTEQALNLWKETLARGLARNVVTINTVINGLCKNRRMTEAEELF 468

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           + +KE     D++ Y T+I G CK+G LG A ++  EM + G +P+   +NS I G    
Sbjct: 469 HRMKEWSCPCDSLTYRTLIDGYCKLGDLGRATQIRIEMENLGFVPSVEMFNSFITGLFIA 528

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
               +   +  EM  KG    TVTY  LIAG C  G   +A  L+ EM +KG+  ++   
Sbjct: 529 KQSGKVNDIRVEMSAKGLSPNTVTYGALIAGWCKEGNLHDACILYFEMVEKGLKPNLFIC 588

Query: 413 NTLIQGYCKEGKI 425
           + L+  + +EGK+
Sbjct: 589 SVLVSCFYREGKV 601



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 153/369 (41%), Gaps = 30/369 (8%)

Query: 53  TKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL 112
           T+ R E   L  +PS    +      F+ +Q+  +  IR      S  G SP+ V+   L
Sbjct: 500 TQIRIEMENLGFVPSVEMFNSFITGLFIAKQSGKVNDIRVEM---SAKGLSPNTVTYGAL 556

Query: 113 FDSLV-EARAFKVAMDFLD--STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
                 E       + + +    G  PN     + + C    G ++EA     KL +  +
Sbjct: 557 IAGWCKEGNLHDACILYFEMVEKGLKPNLFICSVLVSCFYREGKVDEANLVLQKLADTDM 616

Query: 170 FGSIKTWNSALLGCIKI------------DRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              I+  +++ L   K+                ++W +         +I   C  G+V++
Sbjct: 617 ---IQDCSASTLNIGKVAHIIESLAGGNHQSAKIMWNI---------VILGLCKLGRVAD 664

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L   +   G +P+N  ++ LI       +      L   M++    P+  TY  +I 
Sbjct: 665 ARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSARLTPNIVTYNSLIY 724

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCKS     A  +FN L+ +G  P+ + Y T+I G CK G   +A K+  +MI +G+ P
Sbjct: 725 GLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEAFKLKQKMIKEGIQP 784

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
             +TY  +IHG C    +EEA +L  +M++       +TY TLI G    G       L+
Sbjct: 785 TVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQGYARCGNMKAITKLY 844

Query: 398 EEMAQKGIF 406
            EM   G+ 
Sbjct: 845 NEMHICGLL 853



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/222 (27%), Positives = 112/222 (50%), Gaps = 1/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A  + G++ +   +  ++ + G      + N+L+++  +  + G    +   M    
Sbjct: 100 LLRAHADAGQLKDALYVFDEMGKAGSRRTLRSCNRLLNQLVQAGDIGTAVAVFQQMRCAG 159

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+FT   +    C+  +   A     +++E G   + V Y  V+ G C++G    AR
Sbjct: 160 TLPDDFTVAIMAKAYCRDGRVAHAADFLKEMEEMGLDVNLVAYHAVMDGYCRIGQTEVAR 219

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-KGYGETTVTYNTLIAG 383
           K+   +  KGL PN  TY  ++ GYC+   +EEA+++ KE+ + +      V Y  LI G
Sbjct: 220 KLLHSLQVKGLSPNVVTYTLLVKGYCKEGRMEEAEKVVKEIKENEKIVIDEVAYGALING 279

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  GR ++A  + +EM   G+  ++  YNT+I GYCK G++
Sbjct: 280 YCQRGRMEDANRVRDEMIDAGVQVNMFVYNTMINGYCKLGRM 321



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 9/208 (4%)

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           + I  LC+ G + +A   F  LK  G      T++S + GC      DL + L  +++ +
Sbjct: 651 IVILGLCKLGRVADARNLFEDLKVKGFIPDNFTYSSLIHGCSASGSIDLAFGLRDEMLSA 710

Query: 203 ---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
                      LI   C    VS    L  ++   G+ P    +N LI   C+  N    
Sbjct: 711 RLTPNIVTYNSLIYGLCKSCNVSRAVSLFNKLQSKGISPNAITYNTLIDGHCKDGNTTEA 770

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
            +L   M+     P  FTY  +I+GLC      EA ++ + + E    P+ + Y T+I G
Sbjct: 771 FKLKQKMIKEGIQPTVFTYTILIHGLCTQGYMEEAIKLLDQMIENNVDPNFITYWTLIQG 830

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYT 341
             + G +    K++ EM   GLLP  +T
Sbjct: 831 YARCGNMKAITKLYNEMHICGLLPANWT 858


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 110/361 (30%), Positives = 165/361 (45%), Gaps = 46/361 (12%)

Query: 85  NVLLSIRFFQWLHS------HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
           N+L+   +F   H       H G +PD+ +  +   S    +    A+  L++       
Sbjct: 119 NILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNN--MPSQG 176

Query: 139 NSLELYIQCLCESGLIEE-----AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             L   + C   SG  EE     A+  F+K+  +G+F  I T+N                
Sbjct: 177 CELNAVVYCTVISGFYEENYQVEAYELFNKMLRLGIFPHIATFN---------------- 220

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF--- 250
           KL H L          C  G + EG +LL +VL++G+ P    FN  I   C K      
Sbjct: 221 KLMHIL----------CKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGA 270

Query: 251 -GRVSEL---LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             +V E    LH MV +   PD+FTY  +I G  K  K  +A R+  D K +G+VPD   
Sbjct: 271 NSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFT 330

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y ++I G+C+ G +  A  ++ E + KGL P+   YN++I G  +   + +A +L  +M 
Sbjct: 331 YCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMS 390

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +G      TYN +I GLC  G   +A +L      KG   D+ T+NTLI GYCK  K+ 
Sbjct: 391 KEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMD 450

Query: 427 N 427
           N
Sbjct: 451 N 451



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 156/344 (45%), Gaps = 19/344 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE-- 155
           G  P + + N L   L +    +     L+     G  PN  +  ++IQ LC  G++E  
Sbjct: 211 GIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGA 270

Query: 156 -----EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
                EA     K+   G+     T+N+ + G  K+ +     ++  D    G+      
Sbjct: 271 NSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFT 330

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI   C DG +     L  + L  GL P    +N LI    ++    +  +L++ M 
Sbjct: 331 YCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMS 390

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
               +PD +TY  VINGLCK     +A  + N    +GY+PD   + T+I G CK   + 
Sbjct: 391 KEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMD 450

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +   M   G+ P+  TYNS+++G C+    E+     K +++KG     +TYN LI
Sbjct: 451 NAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILI 510

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             LC   +  EA  L EE+  +G+  D +++ T+I G+C  G +
Sbjct: 511 ESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDL 554



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 20/342 (5%)

Query: 101 GFSPDLVSCNVLFDSL-----VEARAFKV--AMDFLD---STGFSPNPNSLELYIQCLCE 150
           G  P+L + N+    L     +E    KV  A ++L    + G  P+  +    I    +
Sbjct: 246 GVCPNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSK 305

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
            G I++A       K  G      T+ S ++G  +    D    L+ + +  G       
Sbjct: 306 VGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVL 365

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI+     G V +  +L+  + ++G+ P+   +N +I+  C+       + LL+  +
Sbjct: 366 YNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAI 425

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A+   PD FT+  +I+G CK  K   A  + + +   G  PD + Y ++++GLCK     
Sbjct: 426 AKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPE 485

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           D  + +  ++ KG LPN  TYN +I   C+   + EA  L +E+ ++G     V++ T+I
Sbjct: 486 DVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVI 545

Query: 382 AGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKE 422
           +G C +G  DEAY LF  M Q+  I   V TYN +I  + ++
Sbjct: 546 SGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEK 587



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 158/381 (41%), Gaps = 50/381 (13%)

Query: 95  WLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
           +LH   + G  PD  + N +     +    + A   L      GF P+  +    I  +C
Sbjct: 280 YLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVC 339

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           + G I+ A   F +    G+  SI  +N+ + G  +        +L +D+ + G      
Sbjct: 340 QDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIW 399

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I   C  G VS+   LL   +  G +P+   FN LI  +C++        +L +M
Sbjct: 400 TYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM 459

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            +    PD  TY  ++NGLCK+ K  +    F  + E+G +P+ + Y  +I  LCK   +
Sbjct: 460 WSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKV 519

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA---------------------- 358
            +A  +  E+ ++GL+P+  ++ ++I G+C   +L+EA                      
Sbjct: 520 TEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNI 579

Query: 359 --------------KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
                         ++L  EM DKG    + TY  +I G C  G  +  Y    +  + G
Sbjct: 580 MINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIG 639

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
               + T+  +I   C + ++
Sbjct: 640 FVPSLTTFGRVINCLCVQHRV 660



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 147/324 (45%), Gaps = 13/324 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V  N L   L +      A+  ++     G SP+  +  L I  LC+ G + +A
Sbjct: 358 GLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDA 417

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-C--IKIDRT----DLVWK--LYHDLIESGYLIQA 208
               +     G    I T+N+ + G C  +K+D      D +W   +  D+I    ++  
Sbjct: 418 NNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNG 477

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K  +  E  + ++E G +P    +N LI   C+ +      +LL  +  R   PD
Sbjct: 478 LCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPD 537

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM-YTTVIHGLCKMGWLGDARKMW 327
             ++  VI+G C +    EAY++F  ++++  +  TV  Y  +I+   +   +  A+K++
Sbjct: 538 PVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMINAFSEKLDMDMAQKLF 597

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  KG  P+ YTY  MI G+C++ N+        + ++ G+  +  T+  +I  LC+ 
Sbjct: 598 HEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQ 657

Query: 388 GRTDEAYHLFEEMAQKGIFRDVIT 411
            R  EA  +   M + G+  + + 
Sbjct: 658 HRVHEAVGIVHLMVRTGVVPEAVV 681



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 121/238 (50%), Gaps = 9/238 (3%)

Query: 197 HDLIESGYL--IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           + L+E  Y+  ++ +   GKV E  ++  ++      P   ++N +++   E   F +  
Sbjct: 72  NSLLEGVYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAH 131

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           ++   M     APD  T+   I   C++++ L A R+ N++  +G   + V+Y TVI G 
Sbjct: 132 KVYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGF 191

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            +  +  +A +++ +M+  G+ P+  T+N ++H  C+  +L+E ++L  ++L  G     
Sbjct: 192 YEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNL 251

Query: 375 VTYNTLIAGLCLHG-------RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T+N  I GLC  G       +  EA +   +M  KG+  D  TYNT+I GY K GKI
Sbjct: 252 FTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKI 309


>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Cucumis sativus]
          Length = 732

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 154/330 (46%), Gaps = 29/330 (8%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           ++GF PD+ + N+L   L +  +   A D ++     G  PN  +  + +  LC++GL+E
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAGLLE 442

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EA     ++   G+     T NS +  C                     LI A C   KV
Sbjct: 443 EAGLVLHEMSARGL-----TINSVIYNC---------------------LICALCRKEKV 476

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                LL ++   G  P+   +N LI   C+         L H M+      +N TY  +
Sbjct: 477 HVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNVTYNTL 536

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ L +     +A  + ND+  RG   D + Y  +I   CK+G +    +++ +MI  GL
Sbjct: 537 IHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLIKAFCKVGNIEKGLELYEQMIMDGL 596

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             +  + N MI+G C++  ++ A    ++ +++G+    VTYN+++ GLC  GR  EA +
Sbjct: 597 GADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCKVGRIKEALN 656

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LF+ +  +G+  D  TYNT I   CKEG +
Sbjct: 657 LFDRLQVEGVRPDAFTYNTFISWQCKEGMV 686



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 153/326 (46%), Gaps = 30/326 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLELYIQCLCESGLIEEAFC 159
           P+    N L +  V +   K A  FL+ T    GF P+  +  + +  LC+ G +  A  
Sbjct: 352 PNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARD 411

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
             +++   G   ++ T+                            L+   C  G + E  
Sbjct: 412 LVNEMSRRGCEPNVITY--------------------------AILVNGLCKAGLLEEAG 445

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            +L ++   GL   +  +N LI   C K+       LL  M  +   PD FTY  +I GL
Sbjct: 446 LVLHEMSARGLTINSVIYNCLICALCRKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGL 505

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK  +  EA+R+F+++   G V + V Y T+IH L + G    A  +  +M+ +G   ++
Sbjct: 506 CKVDRIDEAFRLFHNMLLDGAVANNVTYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDK 565

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN +I  +C++ N+E+   L+++M+  G G  T++ N +I GLC  G+ D A+    +
Sbjct: 566 ITYNGLIKAFCKVGNIEKGLELYEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRD 625

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
              +G   D++TYN+++ G CK G+I
Sbjct: 626 AINRGFVPDIVTYNSVLNGLCKVGRI 651



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/222 (33%), Positives = 119/222 (53%), Gaps = 5/222 (2%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G +++A C   +V     LLR + + G VP +  +  LI    +K       +LL  M  
Sbjct: 222 GIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHALSQKNQVSEALKLLEEMFV 281

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T+ +VI+GLCK  K  +A ++ + +  RG+ PD + Y  ++HGLC++G L +
Sbjct: 282 MGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNE 341

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR-LHKEMLDKGYGETTVTYNTLI 381
           ARK+  ++      PN    N++I+GY     L+EA+  L++ M++ G+     TYN L+
Sbjct: 342 ARKILIKIP----CPNNAILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILM 397

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            GLC  G    A  L  EM+++G   +VITY  L+ G CK G
Sbjct: 398 HGLCKEGSLSFARDLVNEMSRRGCEPNVITYAILVNGLCKAG 439



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/204 (27%), Positives = 98/204 (48%), Gaps = 32/204 (15%)

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           + + + M+++  +P  FT+  V+  LC   +   A  +  D+ + G VP++++Y T+IH 
Sbjct: 203 TNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTLIHA 262

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L +   + +A K+  EM   G +P+  T+N +IHG C+++ + +A +L   ML +G+   
Sbjct: 263 LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRGFYPD 322

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLF--------------------------------EEMA 401
            +TY  L+ GLC  G+ +EA  +                                 E M 
Sbjct: 323 NMTYGFLLHGLCRIGKLNEARKILIKIPCPNNAILNTLINGYVMSGQLKEAQSFLNETMI 382

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G   D+ TYN L+ G CKEG +
Sbjct: 383 NFGFQPDIFTYNILMHGLCKEGSL 406


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 147/287 (51%), Gaps = 9/287 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           ESG + +A   +   +E   +  +      L   +K+    LVW  Y +++E GY     
Sbjct: 65  ESGFLRDAIECYRLTREHKFWVPLDXCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLY 124

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+  FC +G +     +   + + GL P   +FN L++ +    +      L + M
Sbjct: 125 FFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAM 184

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G CK G +
Sbjct: 185 HASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRV 244

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+ + L P+  TYN++ +G C+  +L++A  L  EM  KG     +TY TL
Sbjct: 245 DLAMEIYKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTL 304

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           I G C  G  + A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 305 IDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVD 351



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 149/324 (45%), Gaps = 13/324 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---I 145
           +I  ++    H  + P L  C  + + L++ + FK+   F         P SL  +   +
Sbjct: 72  AIECYRLTREHKFWVP-LDXCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILM 130

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C+ G I  A   F  + + G+  S+ ++N+ + G I++   D  ++L + +  SG  
Sbjct: 131 HRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQ 190

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI   C + K+ +  EL  ++L+ GLVP    F  LI   C+        E+
Sbjct: 191 PDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEI 250

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M++++ +PD  TY  +  GLCK     +A+ + +++  +G  PD + YTT+I G CK
Sbjct: 251 YKQMLSQSLSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCK 310

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      T
Sbjct: 311 EGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGT 370

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEM 400
           Y  +I   C  G       L +EM
Sbjct: 371 YTMIINEFCKKGDVWTGSKLLKEM 394


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 146/317 (46%), Gaps = 9/317 (2%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           D L EA      ++   S G +P+       I+ LC  G   +A       +  G    +
Sbjct: 53  DDLAEAARL---VETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDV 109

Query: 174 KTWNSALLGCIKIDRTDLVWKLYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLE 227
             +N+ + G  +  R D   +L        D      +I+  C+ G+V +   LL  +L+
Sbjct: 110 FAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQ 169

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            G  P    +  L+   C+   FG    +L  M A+   P+  TY  +ING+C+  +  +
Sbjct: 170 RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 229

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  + N L   G+ PD V YTTV+ GLC      D + ++ EM+ K  +PNE T++ ++ 
Sbjct: 230 AKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVR 289

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            +CR   +E A ++ ++M   G    T   N +I  +C  GR D+AY     M   G   
Sbjct: 290 FFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNP 349

Query: 408 DVITYNTLIQGYCKEGK 424
           D I+Y T+++G C+ G+
Sbjct: 350 DTISYTTVLRGLCRAGR 366



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 151/328 (46%), Gaps = 32/328 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+  VL +++ ++  F  AM+ LD   + G +PN  +  + I  +C  G +++A
Sbjct: 171 GCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDA 230

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               ++L   G    I ++ + L G     R D V  L+ ++++                
Sbjct: 231 KEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKK-------------- 276

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                        VP    F+ L+  FC      R  ++L  M      P+      VIN
Sbjct: 277 ------------CVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVIN 324

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            +CK  +  +AY   N++   G  PDT+ YTTV+ GLC+ G    A+++  EM+ K   P
Sbjct: 325 AICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPP 384

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NE T+N+ I   C+   +E+A +L + M + G     VTYN L+ G C+ GR D A  LF
Sbjct: 385 NEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF 444

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  +    + ITY TL+ G C   ++
Sbjct: 445 NNLPCEP---NTITYTTLLTGLCHAERL 469



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 80/334 (23%), Positives = 142/334 (42%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G   D+ + N L            A   + S    P+  +    I+ LC+ G + +A   
Sbjct: 104 GAPVDVFAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALAL 163

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              + + G   S+ T+   L    K         +  ++   G          +I   C 
Sbjct: 164 LDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCR 223

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G+V +  E+L ++   G  P+  ++  ++   C  + +  V  L   MV +   P+  T
Sbjct: 224 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVT 283

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           ++ ++   C+      A +V   + + G  P+T +   VI+ +CK G + DA      M 
Sbjct: 284 FDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 343

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  +Y +++ G CR    E AK L  EM+ K      VT+NT I  LC  G  +
Sbjct: 344 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIE 403

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L E M + G    ++TYN L+ G+C +G++
Sbjct: 404 QAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRV 437



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 15/339 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           S YGF PD+VS   +   L  AR +   KV    +      PN  + ++ ++  C  G++
Sbjct: 238 SSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMV 297

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           E A     ++ + G   +    N  +    K  R D  +   +         D I    +
Sbjct: 298 ERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTV 357

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C  G+     ELL +++     P    FN  I   C+K    +  +L+  M     
Sbjct: 358 LRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGC 417

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +    TY  +++G C   +   A  +FN+L      P+T+ YTT++ GLC    L  A +
Sbjct: 418 SVGIVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAE 474

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   MI K    N  T+N ++  +C+   +EEA  L  +M++ G     +T+NTL+ G+ 
Sbjct: 475 LLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGIT 534

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               ++EA  L   +  KG+  D ITY++++    +E +
Sbjct: 535 KDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDR 573



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 3/185 (1%)

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           + R   + +    + L+ T  +R  APD +   ++I  LC+  +  +A RV    +  G 
Sbjct: 46  LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGA 105

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
             D   Y T++ G C+ G L  AR++   M    + P+ YTY  +I G C    + +A  
Sbjct: 106 PVDVFAYNTLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPIIRGLCDRGRVGDALA 162

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  +ML +G   + VTY  L+  +C      EA ++ +EM  KG   +++TYN +I G C
Sbjct: 163 LLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMC 222

Query: 421 KEGKI 425
           +EG++
Sbjct: 223 REGRV 227



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 138/316 (43%), Gaps = 9/316 (2%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           YG +PD +S   +   L  A  ++ A + L         PN  +   +I  LC+ GLIE+
Sbjct: 345 YGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIEQ 404

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------IESGYLIQAFC 210
           A      + E G    I T+N+ + G     R D   +L+++L      I    L+   C
Sbjct: 405 AIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELFNNLPCEPNTITYTTLLTGLC 464

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           +  ++    ELL  +++         FN L+S FC+K       EL++ M+     P+  
Sbjct: 465 HAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLI 524

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +++G+ K     EA  + + L  +G   DT+ Y++V+  L +     +A +M   +
Sbjct: 525 TFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAV 584

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G+ P    YN ++   C+    ++A      M+  G      TY  LI GL   G  
Sbjct: 585 QDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLL 644

Query: 391 DEAYHLFEEMAQKGIF 406
            EA ++  E+  KG+ 
Sbjct: 645 KEARYVLSELYAKGVL 660



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/215 (20%), Positives = 90/215 (41%), Gaps = 12/215 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ ++   L   L  A     A + L          N  +  + +   C+ G +EEA   
Sbjct: 451 PNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMEL 510

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +++ E G   ++ T+N+ L G  K   ++   +L H L+  G          ++     
Sbjct: 511 VNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVSKGVSLDTITYSSVVDVLSR 570

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + +  E  ++L  V + G+ P+   +NK++   C++    +  +    MV+    P+  T
Sbjct: 571 EDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNEST 630

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           Y  +I GL       EA  V ++L  +G +  +++
Sbjct: 631 YIILIEGLAHEGLLKEARYVLSELYAKGVLSKSLL 665


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 158/335 (47%), Gaps = 16/335 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P ++    +   LV+ + +  A+     ++  G  PN  +L + I C C  G +  +F 
Sbjct: 62  TPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCHLGQMAFSFS 121

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES----------GYLIQA 208
              K+ ++G      T N+ + G C+K +    +   +HD + +          G L+  
Sbjct: 122 VLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLH--FHDKVVAQGFQMNQVSYGTLLNG 179

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+     +LLR + +    P+   ++ +I   C+ K   +  +    M AR   P+
Sbjct: 180 LCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPN 239

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I G C + + + A+ + N++  +   P+   Y  +I  LCK G + +A+K+  
Sbjct: 240 VITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLA 299

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM HKG   +  TYNS++ G C+  NL++A  L  +M   G      TY  LI GLC  G
Sbjct: 300 EMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGG 359

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R   A  LF+ +  KG   DV TYN +I G CKEG
Sbjct: 360 RLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEG 394



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 159/330 (48%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+LV+ N+L +        A +F V    L   G+ P+  +L   ++ LC  G ++ 
Sbjct: 95  GIEPNLVTLNILINCFCHLGQMAFSFSVLGKIL-KLGYQPDTITLNTLMKGLCLKGEVKR 153

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           +     K+   G   +  ++ + L G  KI  T    KL           D++    +I 
Sbjct: 154 SLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIID 213

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C D  V++ Y+   ++   G+ P    ++ LI  FC          LL+ M+ +N  P
Sbjct: 214 GLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINP 273

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + +TY  +I+ LCK  K  EA ++  ++  +G   D V Y +V+ GLCK   L  A  ++
Sbjct: 274 NVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALF 333

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M   G+ PN+YTY ++I G C+   L+ A++L + +L KG      TYN +I+GLC  
Sbjct: 334 MKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKE 393

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           G  D+A  +  +M   G   + +T++ +I+
Sbjct: 394 GMFDKALAMKSKMEDNGCIPNAVTFDIIIR 423



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/318 (26%), Positives = 143/318 (44%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++ N L   L      K ++ F D   + GF  N  S    +  LC+ G    A
Sbjct: 130 GYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCA 189

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +++      +  +++ + G  K    +  +  + ++   G          LI  
Sbjct: 190 VKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWG 249

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++   + LL +++   + P    +N LI   C++       +LL  M  + +  D
Sbjct: 250 FCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPAD 309

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  V++GLCKS+   +A  +F  +K+ G  P+   YT +I GLCK G L +A+K++ 
Sbjct: 310 VVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTALIDGLCKGGRLKNAQKLFQ 369

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ KG   +  TYN MI G C+    ++A  +  +M D G     VT++ +I  L    
Sbjct: 370 HLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEKD 429

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A  L   M  KG+ 
Sbjct: 430 ENDKAEKLLHGMIAKGLL 447



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/133 (29%), Positives = 68/133 (51%)

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           FN L    + P  + +  ++  L KM     A  +  +M  KG+ PN  T N +I+ +C 
Sbjct: 53  FNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFCH 112

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +  +  +  +  ++L  GY   T+T NTL+ GLCL G    + H  +++  +G   + ++
Sbjct: 113 LGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVS 172

Query: 412 YNTLIQGYCKEGK 424
           Y TL+ G CK G+
Sbjct: 173 YGTLLNGLCKIGE 185


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 137/292 (46%), Gaps = 9/292 (3%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G SP+  +L +   CLC    + E   A + +   G    I T+N+ + G  ++ R   
Sbjct: 4   AGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRIS- 62

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                   + +  +I   C  G   E  E+  ++   G++P   +++ L+  FC      
Sbjct: 63  --------VATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLE 114

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               L + MV +   P+   +  +I+ LCK  K +EA ++     +RG + D V Y ++I
Sbjct: 115 ESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLI 174

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G CK+G L  ARK++  M  KG   NE +Y  +I+GYC+I  +EEA  L+ EM   G  
Sbjct: 175 DGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKR 234

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               TY+TL+ GL   G+  +A  LF  M   GI  D   Y   + G CK G
Sbjct: 235 PNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNG 286



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 163/330 (49%), Gaps = 24/330 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G+ PD+V+ N L   L       VA   +               I  LC+ G  +EA   
Sbjct: 40  GYIPDIVTYNTLIKGLCRVHRISVATCII---------------IDGLCKVGHEDEAKEI 84

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F ++K  G+  ++ +++S + G     + +   +L++++++ G          LI   C 
Sbjct: 85  FEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCK 144

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKV E  +LL   ++ G++ +   +N LI  FC+  +     +L  +M ++    +  +
Sbjct: 145 EGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEIS 204

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +ING CK  K  EA  ++N++ + G  P+   Y+T++ GL + G +GDA K++  M 
Sbjct: 205 YTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMK 264

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+  +   Y   + G C+   L EA  L  E+    +     +Y+ LI GLC  G+ +
Sbjct: 265 ASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVE 324

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            A+  F++++Q+G+  +V+T N +I G+C+
Sbjct: 325 IAWEFFKQLSQEGLQPNVVTCNIMIHGFCR 354



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/248 (30%), Positives = 123/248 (49%), Gaps = 17/248 (6%)

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG--- 251
           L  DL     L    CN  +VSEG   +  +L  G +P+   +N LI   C         
Sbjct: 6   LSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVAT 65

Query: 252 --------------RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
                            E+   M A+   P+  +Y  +++G C + K  E+ R+FN++ +
Sbjct: 66  CIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVD 125

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +G  P+ V +  +I  LCK G + +A+K+    I +G++ +  TYNS+I G+C+I +L  
Sbjct: 126 QGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSS 185

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A++L   M  KG     ++Y  LI G C   + +EA +L+ EM Q G   +V TY+TL+ 
Sbjct: 186 ARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLT 245

Query: 418 GYCKEGKI 425
           G  + GK+
Sbjct: 246 GLLQTGKV 253



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/318 (27%), Positives = 147/318 (46%), Gaps = 15/318 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+++S + L      A   + +    +     G  PN     + I  LC+ G + EA
Sbjct: 92  GMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVIEA 151

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
                   + G+   + T+NS + G  KI       KL+         H+ I    LI  
Sbjct: 152 KKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILING 211

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   KV E   L  ++ + G  P    ++ L++   +    G  ++L   M A   + D
Sbjct: 212 YCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVD 271

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +  Y   ++GLCK+    EA  +FN+LK   +  D   Y+ +I GLCK G +  A + + 
Sbjct: 272 SCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFK 331

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL---HKEMLDKGYGETTVTYNTLIAGLC 385
           ++  +GL PN  T N MIHG+CR++ +++A  L    ++M + G     +TYNTL+ G C
Sbjct: 332 QLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFC 391

Query: 386 LHGRTDEAYHLFEEMAQK 403
              + +E  +L  +M ++
Sbjct: 392 ESNKLEEVVNLLHKMFKR 409



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 83/161 (51%), Gaps = 18/161 (11%)

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +PD FT   + N LC   +  E       +  RGY+PD V Y T+I GLC++  +  A  
Sbjct: 7   SPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHRISVATC 66

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +                  +I G C++ + +EAK + +EM  +G     ++Y++L+ G C
Sbjct: 67  I------------------IIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFC 108

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             G+ +E+  LF EM  +G+  +++ +N LI   CKEGK++
Sbjct: 109 CAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKVI 149



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + ++G S +     +++  LC++G++ EA   F++LK        ++++  + G  K  +
Sbjct: 263 MKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGK 322

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG---YELLRQVLEDGLVPENTA 236
            ++ W+ +  L + G          +I  FC   +V +    +E + ++ E+G  P+   
Sbjct: 323 VEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIIT 382

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +N L+  FCE      V  LLH M  R R
Sbjct: 383 YNTLLRGFCESNKLEEVVNLLHKMFKRMR 411


>gi|225450007|ref|XP_002272339.1| PREDICTED: pentatricopeptide repeat-containing protein At2g19280
           [Vitis vinifera]
          Length = 644

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 153/307 (49%), Gaps = 9/307 (2%)

Query: 125 AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
           AMD L+    SPN      +I  LC  G + +A   F  + EMG+     ++ + + G  
Sbjct: 310 AMDVLEVFNLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYC 369

Query: 185 KIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           K+       K    +++ G          LI + C  G +     L ++++ +GLVP+  
Sbjct: 370 KVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYLFQRMITEGLVPDVV 429

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           ++N L++ + +K +  +  ELL  M +   +PD  TY  +I+GL K     EA  + ++L
Sbjct: 430 SYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIKRGLVNEAKDILDEL 489

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
             RG+ PD V +T +I G    G   +A  ++F M    L P+  T +++++GYCR   +
Sbjct: 490 TRRGFSPDVVTFTNIIGGFSNKGNFEEAFLLFFYMSEHHLEPDVVTCSALLNGYCRTRCM 549

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA  L  +MLD G     + YN+LI G C  G  D+A HL   M + GI  + IT++ L
Sbjct: 550 AEANVLFHKMLDAGLKADVILYNSLIHGFCSLGNIDDACHLVSMMIEHGIMPNNITHHAL 609

Query: 416 IQGYCKE 422
           + GY K+
Sbjct: 610 VLGYEKK 616



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 159/337 (47%), Gaps = 15/337 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIE 155
           H    P +  CN L  +L+E+    +A DFL    S G   N + + L+I   C  G I+
Sbjct: 179 HLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKSQGLGLNASIISLFISGYCSQGNID 238

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKL-----YHDLIESGYLI 206
             +    ++K +G+   +  +   +    K+    + T +++K+     + D +    ++
Sbjct: 239 TGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKEATSILFKMTQMGVFLDSVSVSSVV 298

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C  GK  E  ++L       L P    FN  IS+ C   N  + +++   M      
Sbjct: 299 DGYCKVGKSEEAMDVLEVF---NLSPNIFVFNSFISKLCTDGNMLKAAKVFQDMCEMGLI 355

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD F+Y  ++ G CK +    A +    + +RG  P    YT +I   CK G +  A  +
Sbjct: 356 PDCFSYTTMMAGYCKVKDISNALKYLGKMLKRGIRPSVATYTLLIDSCCKPGNMEMAEYL 415

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           +  MI +GL+P+  +YN++++GY +  +L++A  L   M   G     VTYN LI GL  
Sbjct: 416 FQRMITEGLVPDVVSYNTLMNGYGKKGHLQKAFELLSMMRSAGVSPDLVTYNILIHGLIK 475

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G  +EA  + +E+ ++G   DV+T+  +I G+  +G
Sbjct: 476 RGLVNEAKDILDELTRRGFSPDVVTFTNIIGGFSNKG 512



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/225 (24%), Positives = 100/225 (44%), Gaps = 3/225 (1%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G L+  +  +       +L+ ++    + P     N L+    E +      + L  M +
Sbjct: 155 GMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEMKS 214

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +    +       I+G C        +++  ++K  G  PD V YT VI  LCKM  L +
Sbjct: 215 QGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLLKE 274

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  + F+M   G+  +  + +S++ GYC++   EEA  + +             +N+ I+
Sbjct: 275 ATSILFKMTQMGVFLDSVSVSSVVDGYCKVGKSEEAMDVLEVF---NLSPNIFVFNSFIS 331

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LC  G   +A  +F++M + G+  D  +Y T++ GYCK   I N
Sbjct: 332 KLCTDGNMLKAAKVFQDMCEMGLIPDCFSYTTMMAGYCKVKDISN 376



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 66/154 (42%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  ++N   K      A ++   ++     P   +  +++  L +   L  A     EM
Sbjct: 153 VYGMLVNCYVKENMTQVALKLICKMRHLNIFPLIGVCNSLLKALLESEQLNLAWDFLKEM 212

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             +GL  N    +  I GYC   N++   +L  EM   G     V Y  +I  LC     
Sbjct: 213 KSQGLGLNASIISLFISGYCSQGNIDTGWKLLMEMKYLGIKPDVVAYTIVIDSLCKMSLL 272

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            EA  +  +M Q G+F D ++ ++++ GYCK GK
Sbjct: 273 KEATSILFKMTQMGVFLDSVSVSSVVDGYCKVGK 306


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 166/355 (46%), Gaps = 13/355 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPN 139
           Q +V  ++   + L S +G  PD+VS N +   L  A+ +    + ++        PN  
Sbjct: 205 QGSVDKALHLLRDLPS-FGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIV 263

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +    I  LC +GL E      +++ E G    I+ + + + G  K     +  ++ + +
Sbjct: 264 TFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRM 323

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G          L++  C+  +  E  ELL ++ +     ++  FN L+  FC+    
Sbjct: 324 PSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLV 383

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            RV ELL  M+     PD  TY  VING CK     EA  +   +   G  P+T+ YT V
Sbjct: 384 DRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIV 443

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           + GLC      DA  +  +MI +G   N  T+N++I+  C+   +E+A  L K+ML  G 
Sbjct: 444 LKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGC 503

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++Y+T+I GL   G+TDEA  L   M  KG+  + I Y+++     +EG+I
Sbjct: 504 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRI 558



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/325 (28%), Positives = 142/325 (43%), Gaps = 9/325 (2%)

Query: 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
           N +      A   + A     +    PN  +    ++ LC  G I +A     ++   G 
Sbjct: 94  NAMVAGYCRAGQLESARRLAAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGC 153

Query: 170 FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE 220
                 ++  L    +        ++  DL   G          ++ A C+ G V +   
Sbjct: 154 APIPPMYHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALH 213

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LLR +   G  P+  ++N ++   C  K +G V EL+  MV     P+  T+  +I+ LC
Sbjct: 214 LLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTFNTLISYLC 273

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           ++      + V   + E G  PD  MY T+I G+CK G L  A ++   M   GL PN  
Sbjct: 274 RNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKVAHEILNRMPSYGLKPNVV 333

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+++ G C  +  EE + L  EM DK      VT+N L+   C +G  D    L E+M
Sbjct: 334 CYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM 393

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
              G   DVITY T+I G+CKEG I
Sbjct: 394 LVHGCMPDVITYTTVINGFCKEGLI 418



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 134/320 (41%), Gaps = 12/320 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEE 156
           YG  P++V  N L   L  A  ++   + L        P    +  + +   C++GL++ 
Sbjct: 326 YGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDR 385

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 ++   G    + T+ + + G  K    D    L   +   G          +++
Sbjct: 386 VIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 445

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+  +  +  +L+ Q+++ G       FN LI+  C+K    +  ELL  M+    +P
Sbjct: 446 GLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSP 505

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  VI+GL K+ K  EA  + N +  +G  P+T++Y+++   L + G +    +M+
Sbjct: 506 DLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQMF 565

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    +  +   YN++I   C+    E A      M+  G      TY  LI GL   
Sbjct: 566 DNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASE 625

Query: 388 GRTDEAYHLFEEMAQKGIFR 407
           G   EA  +  E+  KG  R
Sbjct: 626 GFVKEAQEMLTELCSKGALR 645


>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
 gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
          Length = 703

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/354 (30%), Positives = 169/354 (47%), Gaps = 21/354 (5%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-------FSPNPNSLELYI 145
           F+ L S  G +P + S N L D+ V AR F  A  F  S          +PN  +  + +
Sbjct: 106 FRALPSILGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQTYNIVL 165

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           + LC  G ++ A   F  L+   V     T+++ + G  K DR D    L  ++  S   
Sbjct: 166 RSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQ 225

Query: 206 IQAFCNDG------KVSEGYELLRQ----VLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
               C +       K  E  +++R     V + G  P    +N ++   C+   F  V E
Sbjct: 226 PDVVCYNALLGGCFKAGEFEKVMRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGE 285

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   MVA N  PD  TY  +I+GLC+S     A RV++++ + G V D  MY +++ G C
Sbjct: 286 VWERMVANNLQPDVITYGILIHGLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFC 345

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ET 373
           + G + +A K W      GL  N  TYN MI G      ++EA  L  ++L+K       
Sbjct: 346 QAGRVQEAWKFWDSAGFAGLR-NLRTYNIMIKGLFDSGMVDEAIELW-DLLEKDVACIPD 403

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TVT+ TLI GLC +G  ++A+ +FEE    G   DV +Y+++I G C  G++V+
Sbjct: 404 TVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMINGLCNVGRLVD 457



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 166/348 (47%), Gaps = 12/348 (3%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQ 146
           +R +  L    G  P+L + NV+ D L +   FK   +  +   +    P+  +  + I 
Sbjct: 248 MRVWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIH 307

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
            LC SG ++ A   +S++ + G+      +NS + G  +  R    WK +     +G   
Sbjct: 308 GLCRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRN 367

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLED-GLVPENTAFNKLISRFCEKKNFGRVSELL 257
                 +I+   + G V E  EL   + +D   +P+   F  LI   C+     +   + 
Sbjct: 368 LRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIF 427

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
                  +  D F+Y  +INGLC   + ++A +V+  + + G  P++ +Y  +I G C++
Sbjct: 428 EEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQV 487

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
               DA +++ +M   G  P   TYN++I G C+ +  +EA  + +EM++ G+     TY
Sbjct: 488 YRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTY 547

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +LI GL    + D+A  +++++  KG+  DV+ +N LI G C  GK+
Sbjct: 548 GSLIRGLFSDKKIDDALSIWKQILYKGLKVDVMMHNILIHGLCSAGKV 595



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 171/374 (45%), Gaps = 54/374 (14%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS---PNPNSLELYIQCLCESGLIEEAFC 159
           +PD ++ + L   L +      A+D LD    S   P+       +    ++G  E+   
Sbjct: 190 APDRITYSTLMCGLAKQDRLDHALDLLDEMPRSRVQPDVVCYNALLGGCFKAGEFEKVMR 249

Query: 160 AFSKL-KEMGVFGSIKTWNSALLGCIKIDR---TDLVWK------LYHDLIESGYLIQAF 209
            + KL K+ G   ++ T+N  L G  K  R      VW+      L  D+I  G LI   
Sbjct: 250 VWDKLVKDPGARPNLATYNVMLDGLCKFGRFKEVGEVWERMVANNLQPDVITYGILIHGL 309

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL------------- 256
           C  G V     +  ++++ GLV +   +N L+  FC+    GRV E              
Sbjct: 310 CRSGDVDGAARVYSEIIKTGLVIDAAMYNSLVKGFCQA---GRVQEAWKFWDSAGFAGLR 366

Query: 257 -----------------------LHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAYRV 291
                                  L  ++ ++ A  PD  T+  +I+GLC++    +A+ +
Sbjct: 367 NLRTYNIMIKGLFDSGMVDEAIELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI 426

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F + +  G   D   Y+++I+GLC +G L DA K++ +M   G  PN + YN++I G+C+
Sbjct: 427 FEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQ 486

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +    +A R++ +M D G   T +TYNTLI GLC   +  EA  +  EM + G   D+ T
Sbjct: 487 VYRTSDAVRIYSKMADNGCSPTVITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITT 546

Query: 412 YNTLIQGYCKEGKI 425
           Y +LI+G   + KI
Sbjct: 547 YGSLIRGLFSDKKI 560



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP--NPNSLELYIQCLCESGLIEEAF 158
           G   D    N L     +A   + A  F DS GF+   N  +  + I+ L +SG+++EA 
Sbjct: 329 GLVIDAAMYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDEAI 388

Query: 159 CAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
             +  L K++       T+ + + G  +    +  + ++ +   SG          +I  
Sbjct: 389 ELWDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTIFEEARVSGKQLDVFSYSSMING 448

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G++ +  ++  ++ +DG  P +  +N LIS FC+         +   M     +P 
Sbjct: 449 LCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPT 508

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+ K  EA  V  ++ E G+ PD   Y ++I GL     + DA  +W 
Sbjct: 509 VITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWK 568

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-KGYGETTVTYNTLIAGLCLH 387
           ++++KGL  +   +N +IHG C    ++EA  +  +M + K      VTYNTL+ GL   
Sbjct: 569 QILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYET 628

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D+A  L+  + + G+  D+I+YNT I+G C   +I
Sbjct: 629 GYIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRI 666



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 86/370 (23%), Positives = 160/370 (43%), Gaps = 26/370 (7%)

Query: 39  LYTEIAKQVCKITRTKPRWEQ------TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           +Y  + K  C+  R +  W+         L ++ ++N      F   +  +     +I  
Sbjct: 336 MYNSLVKGFCQAGRVQEAWKFWDSAGFAGLRNLRTYNIMIKGLFDSGMVDE-----AIEL 390

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           +  L       PD V+   L   L +     +AF +  +    +G   +  S    I  L
Sbjct: 391 WDLLEKDVACIPDTVTFGTLIHGLCQNGFANKAFTI-FEEARVSGKQLDVFSYSSMINGL 449

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C  G + +A   + K+ + G   +   +N+ + G  ++ RT    ++Y  + ++G     
Sbjct: 450 CNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFCQVYRTSDAVRIYSKMADNGCSPTV 509

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI   C   K  E   + R+++E+G  P+ T +  LI      K       +   
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQ 569

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMG 318
           ++ +    D   +  +I+GLC + K  EA  VF+D+KE+   P + V Y T++ GL + G
Sbjct: 570 ILYKGLKVDVMMHNILIHGLCSAGKVDEALHVFSDMKEKKNCPPNLVTYNTLMDGLYETG 629

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
           ++  A  +W  +   GL P+  +YN+ I G C  D + E  +L  E+L +G   T +T+N
Sbjct: 630 YIDKAATLWTSITEDGLEPDIISYNTRIKGLCSCDRIHEGIQLLDEVLSRGIIPTVITWN 689

Query: 379 TLIAGLCLHG 388
            L+  +  +G
Sbjct: 690 ILVRAVIKYG 699



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 6/143 (4%)

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH----KGLLPNEYT 341
           L+A+R    +   G  P    +  ++    +     DA   +  + H    + + PN  T
Sbjct: 103 LDAFRALPSI--LGCNPGIRSHNALLDAFVRARRFSDADAFFASLSHGAFGRRIAPNLQT 160

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN ++   C   +L+ A  L   +  +      +TY+TL+ GL    R D A  L +EM 
Sbjct: 161 YNIVLRSLCARGDLDRAVTLFDSLRRRQVAPDRITYSTLMCGLAKQDRLDHALDLLDEMP 220

Query: 402 QKGIFRDVITYNTLIQGYCKEGK 424
           +  +  DV+ YN L+ G  K G+
Sbjct: 221 RSRVQPDVVCYNALLGGCFKAGE 243


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 142/302 (47%), Gaps = 6/302 (1%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D   S G +P+       I+ LC  G   +A       +  G    +  +N+ + G  +
Sbjct: 97  VDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCR 156

Query: 186 IDRTDLVWKLYHDL--IESGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
             + D   +L   +      Y    +I+  C+ G+V E   LL  +L  G  P    +  
Sbjct: 157 YGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV 216

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           L+   C+   FG+  E+L  M A+   P+  TY  +ING+C+  +  +A    N L   G
Sbjct: 217 LLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 276

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           + PDTV YTTV+ GLC      D  +++ EM+ K  +PNE T++ ++  +CR   +E A 
Sbjct: 277 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAI 336

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           ++ ++M   G    T   N +I  +C  GR D+A+     M   G   D I+Y T+++G 
Sbjct: 337 QVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGL 396

Query: 420 CK 421
           C+
Sbjct: 397 CR 398



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 32/330 (9%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G  P +V+  VL +++ ++  F  AM+ LD   + G +PN  +  + I  +C  G ++
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 263

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           +A    ++L   G                             D +    +++  C   + 
Sbjct: 264 DAREFLNRLSSYG--------------------------FQPDTVSYTTVLKGLCAAKRW 297

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  EL  +++E   +P    F+ L+  FC      R  ++L  M     A +      V
Sbjct: 298 EDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIV 357

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           IN +CK  +  +A++  N++   G  PDT+ YTTV+ GLC+     DA+++  EM+ K  
Sbjct: 358 INTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNC 417

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PNE T+N+ I   C+   +E+A  L ++M + G     VTYN L+ G C+ GR D A  
Sbjct: 418 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 477

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LF  M  K    + ITY TL+ G C   ++
Sbjct: 478 LFYSMPCKP---NTITYTTLLTGLCNAERL 504



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 150/334 (44%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G + D+ + N L            A   + S   +P+  +    I+ LC+ G + EA   
Sbjct: 139 GTAVDVFAYNTLVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSL 198

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              +   G   S+ T+   L    K        ++  ++   G          +I   C 
Sbjct: 199 LDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCR 258

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G+V +  E L ++   G  P+  ++  ++   C  K +  V EL   M+ +N  P+  T
Sbjct: 259 EGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVT 318

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           ++ ++   C+      A +V   +   G   +T +   VI+ +CK G + DA +    M 
Sbjct: 319 FDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMG 378

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  +Y +++ G CR +  E+AK L KEM+ K      VT+NT I  LC  G  +
Sbjct: 379 SYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIE 438

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L E+M++ G   +++TYN L+ G+C +G++
Sbjct: 439 QATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRV 472



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 153/340 (45%), Gaps = 15/340 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S YGF PD VS   +   L  A+ ++   +    +      PN  + ++ ++  C  G++
Sbjct: 273 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNCMPNEVTFDMLVRFFCRGGMV 332

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           E A     ++   G   +    N  +    K  R D  ++  +         D I    +
Sbjct: 333 ERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTV 392

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C   +  +  ELL++++     P    FN  I   C+K    + + L+  M     
Sbjct: 393 LKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGC 452

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +  TY  ++NG C   +   A  +F  +  +   P+T+ YTT++ GLC    L  A +
Sbjct: 453 EVNIVTYNALVNGFCVQGRVDSALELFYSMPCK---PNTITYTTLLTGLCNAERLDAAAE 509

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM+ K   PN  T+N ++  +C+   ++EA  L ++M++ G     +TYNTL+ G+ 
Sbjct: 510 LLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGIT 569

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++EA  L   +   G+  D++TY+++I    +E ++
Sbjct: 570 KDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRV 609



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 146/325 (44%), Gaps = 11/325 (3%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           FQ+L++   YG SPD +S   +   L  A  ++ A + L         PN  +   +I  
Sbjct: 371 FQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNTFICI 430

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------IE 201
           LC+ GLIE+A     ++ E G   +I T+N+ + G     R D   +L++ +      I 
Sbjct: 431 LCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMPCKPNTIT 490

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L+   CN  ++    ELL ++L+    P    FN L+S FC+K       EL+  M+
Sbjct: 491 YTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFCQKGLMDEAIELVEQMM 550

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P+  TY  +++G+ K     EA  + + L   G  PD V Y+++I  L +   + 
Sbjct: 551 EHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSSIIGVLSREDRVE 610

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A KM+  +   G+ P    YN ++   C+  N + A      M+  G     +TY TLI
Sbjct: 611 EAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSNGCMPNELTYITLI 670

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIF 406
            GL       E   L  E+  +G+ 
Sbjct: 671 EGLANEDFLKETRDLLRELCSRGVL 695



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 60/203 (29%), Positives = 95/203 (46%), Gaps = 9/203 (4%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVIN 277
           L+ +    G  P+     KLI   C +   GR S+    + A  R   A D F Y  ++ 
Sbjct: 96  LVDRATSRGEAPDVYLCTKLIRNLCRR---GRTSDAARVLRAAERSGTAVDVFAYNTLVA 152

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C+  +   A R+   +      PD   YT +I GLC  G +G+A  +  +M+H+G  P
Sbjct: 153 GYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQP 209

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY  ++   C+     +A  +  EM  KG     VTYN +I G+C  GR D+A    
Sbjct: 210 SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFL 269

Query: 398 EEMAQKGIFRDVITYNTLIQGYC 420
             ++  G   D ++Y T+++G C
Sbjct: 270 NRLSSYGFQPDTVSYTTVLKGLC 292



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 3/174 (1%)

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           R + L+    +R  APD +   ++I  LC+  +  +A RV    +  G   D   Y T++
Sbjct: 92  RAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLV 151

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G C+ G L  AR++   M    + P+ YTY  +I G C    + EA  L  +ML +G  
Sbjct: 152 AGYCRYGQLDAARRLIASM---PVAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQ 208

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + VTY  L+  +C      +A  + +EM  KG   +++TYN +I G C+EG++
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRV 262


>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 157/301 (52%), Gaps = 13/301 (4%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN ++  + I  LC++G +E A      +K+ G+F ++ T N  +    K  R D    +
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSI 466

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF-- 244
           +          D +    LI+     G+V E Y+L  Q+L+   +P    +  LI  F  
Sbjct: 467 FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C +K  G   ++ + M+    +PD       ++ + K+ +  +   +F ++K  G++PD 
Sbjct: 527 CGRKEDGH--KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDA 584

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             YT +IHGL K G+  +A ++++ M  +G + +   YN++I G+C+   + +A +L +E
Sbjct: 585 RSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M  KG+  T VTY ++I GL    R DEAY LFEE   KGI  +V+ Y++LI G+ K G+
Sbjct: 645 MKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGR 704

Query: 425 I 425
           I
Sbjct: 705 I 705



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+L + N++ D L +A   + A+   D +   G  PN  ++ + +  LC++  +++A   
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSI 466

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  L          T+ S + G  +  R D  +KLY  ++++           LI+ F  
Sbjct: 467 FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+  +G+++  ++L  G  P+    N  +    +     +   L   +      PD  +
Sbjct: 527 CGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GL K+    EAY +F  +KE+G V DT  Y TVI G CK G +  A ++  EM 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 646

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  P   TY S+I G  +ID L+EA  L +E   KG     V Y++LI G    GR D
Sbjct: 647 TKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRID 706

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EAY + EE+ QKG+  +V T+N L+    K  +I
Sbjct: 707 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 740



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 145/294 (49%), Gaps = 26/294 (8%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G SP+   L  Y+ C+ ++G IE+    F ++K +G     +++                
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTI-------------- 589

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             L H L+++G+            E YEL   + E G V +  A+N +I  FC+     +
Sbjct: 590 --LIHGLVKAGF----------AHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M  +   P   TY  VI+GL K  +  EAY +F + K +G   + V+Y+++I 
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLID 697

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G  K+G + +A  +  E++ KGL PN YT+N ++    + + + EA    + M D     
Sbjct: 698 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTP 757

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +TY+ LI GLC   + ++A+  ++EM ++G   +V TY T+I G  K G IV
Sbjct: 758 NYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIV 811



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 147/319 (46%), Gaps = 18/319 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPDL+  N   D + +A      +     + + GF P+  S  + I  L ++G   EA
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEA 603

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
           +  F  +KE G     + +N+ + G  K  + +  ++L  ++         +  G +I  
Sbjct: 604 YELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
                ++ E Y L  +    G+      ++ LI  F      GR+ E   ++  ++ +  
Sbjct: 664 LAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGF---GKVGRIDEAYLIMEELMQKGL 720

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+ +T+  +++ L K+ +  EA   F  +K+    P+ + Y+ +IHGLCK+     A  
Sbjct: 721 TPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            W EM  +G  PN +TY +MI G  +  N+ EA  L ++  +KG    +  YN +I GL 
Sbjct: 781 FWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840

Query: 386 LHGRTDEAYHLFEEMAQKG 404
              R  +AY LFEE   KG
Sbjct: 841 NANRASDAYRLFEEARLKG 859



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 174/432 (40%), Gaps = 50/432 (11%)

Query: 42  EIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRFFQWLHSHY 100
           ++   VC+I  T P W  ++ + +   + N +P      L++  +V  ++ +F+W     
Sbjct: 66  QVIDSVCQILETGP-WGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLT 124

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
             +    + N L   +   R F      L+     GF P+ N+    +    +S  + EA
Sbjct: 125 DRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA 184

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR-TDLVWKLYHDLIESGY---------LIQ 207
           F     ++++    +   + + L+G +   R +D +  L+  + E GY         LI+
Sbjct: 185 FTFIQTMRKLKFRPAFSAYTN-LIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F  +G+V     LL ++  + L P+   +N  I  F +        +  H M A     
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVL 303

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D+ TY  +I  LCK+ +  EA  +F  + +   VP    Y T+I G    G   DA  + 
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLL 363

Query: 328 ----------------------------------FEMIHKGLLPNEYTYNSMIHGYCRID 353
                                             FE + K  +PN  TYN MI   C+  
Sbjct: 364 ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAG 423

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            LE A  +   M D G     +T N ++  LC   R D+A  +FE +  K    D +TY 
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 414 TLIQGYCKEGKI 425
           +LI+G  + G++
Sbjct: 484 SLIEGLGRHGRV 495



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 137/296 (46%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  S  +L   LV+A     A +    +   G   +  +    I   C+SG + +A
Sbjct: 579 GFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKA 638

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +    ++K  G   ++ T+ S + G  KIDR D  + L+ +    G          LI  
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G++ E Y ++ ++++ GL P    +N L+    + +          +M      P+
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK RK  +A+  + +++++G+ P+   YTT+I GL K G + +A  ++ 
Sbjct: 759 YITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFE 818

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +   KG + +   YN++I G    +   +A RL +E   KG    T T   L+  L
Sbjct: 819 KFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSL 874



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 156/332 (46%), Gaps = 21/332 (6%)

Query: 112 LFDSLVE--ARAFKV--AMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           LF +L+   AR  +V  A+  LD   S    P+     + I C  ++G ++ A+  F ++
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEM 296

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-----IESGY----LIQAFCNDGKV 215
           K  G+     T+ S +    K DR +   +L+  +     +   Y    +I  +   GK 
Sbjct: 297 KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKF 356

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTYE 273
            + Y LL +    G +P   ++N ++S    K   G+V E L     + ++  P+  TY 
Sbjct: 357 EDAYSLLERQRRKGCIPSVVSYNCILSCLGRK---GQVDEALKKFEEMKKDAIPNLSTYN 413

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+ LCK+ K   A  V + +K+ G  P+ +    ++  LCK   L DA  ++  + HK
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
              P+  TY S+I G  R   ++EA +L+++MLD       V Y +LI      GR ++ 
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++ EM + G   D++  NT +    K G+I
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEI 565


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 173/394 (43%), Gaps = 53/394 (13%)

Query: 35  ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFR-EFLKQQNNVLLSIRFF 93
           E  QLYTE+              E+ +  DI +FN    ++ +  F+K+          F
Sbjct: 175 EMNQLYTEM-------------LEEFVSMDIYTFNLMINVYCKMGFVKEAKQ-------F 214

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCLCES 151
                  G SPD  +          ++    A    +     PN N  S    I  LCE+
Sbjct: 215 MCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEM---PNRNEVSYNQLIHGLCEA 271

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
           G I+EA   F ++K+   + ++ T+ +                          LI+  C 
Sbjct: 272 GRIDEAVSLFVRMKDDCCYPNVYTYTA--------------------------LIKGLCR 305

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              V +   LL ++LE  LVP+   +N LI+  C   +      LL  M  R   PD  T
Sbjct: 306 KN-VHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRT 364

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   I+ LCKS +  EA R+F+ L E G   + +MY+ +I G CK+G + +A  ++ +M+
Sbjct: 365 YGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKML 424

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            K   PN YT+N++IHG C   NL+EA  L  +M+  G   T  T+N LI  +   G  D
Sbjct: 425 SKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFD 484

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A+   ++M   G      TYN  I+ YC  GK+
Sbjct: 485 DAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKV 518



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 11/241 (4%)

Query: 185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           K D T L  K Y++L+    L+  F   G V E  +L  ++LE+ +  +   FN +I+ +
Sbjct: 149 KDDITKLSLKCYNELLT---LLARF---GLVDEMNQLYTEMLEEFVSMDIYTFNLMINVY 202

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+        + +  M+    +PD FT    I G C+S+    A+RVF ++  R    + 
Sbjct: 203 CKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NE 258

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V Y  +IHGLC+ G + +A  ++  M      PN YTY ++I G CR  N+ +A  L  E
Sbjct: 259 VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCR-KNVHKAMGLLDE 317

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           ML++      +TYN+LIAG C  G  D AY L   M ++G+  D  TY   I   CK  +
Sbjct: 318 MLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNR 377

Query: 425 I 425
           +
Sbjct: 378 V 378



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 174/391 (44%), Gaps = 42/391 (10%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDST 132
           F +FL + N V  + R F  L +  G S +++  +VL D   +      A    + + S 
Sbjct: 368 FIDFLCKSNRVEEARRLFDSL-TEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSK 426

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
             SPN  +    I  LC +G ++EA   F ++ +MG+  ++ T+N  +   +K    D  
Sbjct: 427 NCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDA 486

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            K    ++ SG           I+ +C+ GKV E  +++ Q+ E+G+ P++  +  LI  
Sbjct: 487 HKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKA 546

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE---------------- 287
           + +        ++L +M   +  P + T+  +I  L   R  +E                
Sbjct: 547 YGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDV 606

Query: 288 -------------AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
                           +F ++++ G  PD+  Y  +I G+CK+  LG A K+  +M  +G
Sbjct: 607 PGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEG 666

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P+E  +N++I   C++    EA  + ++M+  G+        TLI GL   G T+   
Sbjct: 667 ISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGN 726

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +F+++   G   D I +  LI G  K+G +
Sbjct: 727 SVFKKLRGCGYNDDEIAWKILIDGMLKQGLV 757



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 133/359 (37%), Gaps = 42/359 (11%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ +   L   L      K AM  LD        P+  +    I   C +G ++ A+  
Sbjct: 291 PNVYTYTALIKGLCRKNVHK-AMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRL 349

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            S +KE G+    +T+   +    K +R +   +L+  L E G          LI  +C 
Sbjct: 350 LSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCK 409

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GKV E   L  ++L     P    FN LI   C   N      L   MV     P  +T
Sbjct: 410 VGKVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYT 469

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I  + K     +A++    +   G  P    Y   I   C  G + +A  M  +M 
Sbjct: 470 FNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMK 529

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC------ 385
            +G+ P+++TY S+I  Y ++     A  + K M D     +  T+ +LI  L       
Sbjct: 530 EEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVV 589

Query: 386 -LHGRT----------------------DEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              G T                      D    LFEEM + G   D   Y  LI G CK
Sbjct: 590 EKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICK 648



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 89/168 (52%), Gaps = 10/168 (5%)

Query: 261 VARNRAPDNFT------YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           + R  + D+ T      Y E++  L +     E  +++ ++ E     D   +  +I+  
Sbjct: 143 ICRKMSKDDITKLSLKCYNELLTLLARFGLVDEMNQLYTEMLEEFVSMDIYTFNLMINVY 202

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CKMG++ +A++   +MI  GL P+ +T  S I GYCR  +++ A R+ +EM ++      
Sbjct: 203 CKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYCRSKDVDSAFRVFEEMPNR----NE 258

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           V+YN LI GLC  GR DEA  LF  M     + +V TY  LI+G C++
Sbjct: 259 VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTALIKGLCRK 306


>gi|356513749|ref|XP_003525573.1| PREDICTED: pentatricopeptide repeat-containing protein At2g26790,
           mitochondrial-like [Glycine max]
          Length = 819

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 163/338 (48%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++CN LF+ LVE      A+     L   GF PN  +  + I+ LC+ G +++ 
Sbjct: 190 GILPDVLTCNFLFNRLVEHGEVDKALAVYEQLKRFGFIPNCYTYAIVIKALCKKGDLKQP 249

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
            C F +++ +GV      + + + G     R+DL +++           ++     +++ 
Sbjct: 250 LCVFEEMERVGVIPHSYCFAAYIEGLCNNHRSDLGYEVLQAFRKGNAPLEVYAYTAVVRG 309

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FCN+ K+ E   +   +   G+VP+   ++ LI  +C+  N  R   L   M++R    +
Sbjct: 310 FCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLIHGYCKSHNLLRALALHDEMISRGVKTN 369

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                 +++ L +    LE    F +LKE G   D V Y  V   LC +G + DA +M  
Sbjct: 370 CVVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVAYNIVFDALCMLGKVEDAVEMVE 429

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K L  +   Y ++I+GYC   +L  A  + KEM +KG     VTYN L AGL  +G
Sbjct: 430 EMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEKGLKPDIVTYNVLAAGLSRNG 489

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              E   L + M  +G+  +  T+  +I+G C  GK++
Sbjct: 490 HARETVKLLDFMESQGMKPNSTTHKMIIEGLCSGGKVL 527



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 172/369 (46%), Gaps = 32/369 (8%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPN 139
           Q +++ +   F+ +    G  PD+V+ NVL   L     AR     +DF++S G  PN  
Sbjct: 453 QGDLVTAFNMFKEMKEK-GLKPDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMKPNST 511

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           + ++ I+ LC  G + EA   F+ L++     +I+ +++ + G  + D     ++++  L
Sbjct: 512 THKMIIEGLCSGGKVLEAEVYFNSLED----KNIEIYSAMVNGYCETDLVKKSYEVFLKL 567

Query: 200 IESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +  G          L+   C  G + +  +LL ++L   + P    ++K+++  C+  + 
Sbjct: 568 LNQGDMAKKASCFKLLSKLCMTGDIEKAVKLLDRMLLSNVEPSKIMYSKILAALCQAGDM 627

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                L    V R   PD  TY  +IN  C+     EA+ +F D+K RG  PD + +T +
Sbjct: 628 KNARTLFDVFVHRGFTPDVVTYTIMINSYCRMNCLQEAHDLFQDMKRRGIKPDVITFTVL 687

Query: 311 IHGLCKMGWLGD--------------ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           + G  K  +LG                  +  +M    + P+   Y  ++ G+ + DN +
Sbjct: 688 LDGSLK-EYLGKRFSSHGKRKTTSLYVSTILRDMEQMKINPDVVCYTVLMDGHMKTDNFQ 746

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +A  L  +M++ G    T+TY  L++GLC  G  ++A  L  EM+ KG+  DV   + L 
Sbjct: 747 QAVSLFDKMIESGLEPDTITYTALVSGLCNRGHVEKAVTLLNEMSSKGMTPDVHIISALK 806

Query: 417 QGYCKEGKI 425
           +G  K  K+
Sbjct: 807 RGIIKARKV 815



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 146/356 (41%), Gaps = 45/356 (12%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-- 132
            F++F     N    +R F       GF    VS N+          F  A+DFL  T  
Sbjct: 145 LFQDFNTSHKNNYFLLRAFN------GFVKTCVSLNM----------FDKAIDFLFQTRR 188

Query: 133 -GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P+  +       L E G +++A   + +LK  G   +  T+               
Sbjct: 189 RGILPDVLTCNFLFNRLVEHGEVDKALAVYEQLKRFGFIPNCYTY--------------- 233

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                        +I+A C  G + +   +  ++   G++P +  F   I   C      
Sbjct: 234 -----------AIVIKALCKKGDLKQPLCVFEEMERVGVIPHSYCFAAYIEGLCNNHRSD 282

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              E+L      N   + + Y  V+ G C   K  EA  VF+D++ +G VPD  +Y+++I
Sbjct: 283 LGYEVLQAFRKGNAPLEVYAYTAVVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLI 342

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           HG CK   L  A  +  EMI +G+  N    + ++H    +    E     KE+ + G  
Sbjct: 343 HGYCKSHNLLRALALHDEMISRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKELKESGMF 402

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              V YN +   LC+ G+ ++A  + EEM  K +  DV  Y TLI GYC +G +V 
Sbjct: 403 LDGVAYNIVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVT 458



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/369 (20%), Positives = 135/369 (36%), Gaps = 80/369 (21%)

Query: 133 GFSPNPNSLELY-----IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            F      LE+Y     ++  C    ++EA   F  ++  GV   +  ++S + G  K  
Sbjct: 290 AFRKGNAPLEVYAYTAVVRGFCNEMKLDEAQGVFDDMERQGVVPDVYVYSSLIHGYCKSH 349

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
                  L+ ++I  G          ++      G   E  +  +++ E G+  +  A+N
Sbjct: 350 NLLRALALHDEMISRGVKTNCVVVSCILHCLGEMGMTLEVVDQFKELKESGMFLDGVAYN 409

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            +    C         E++  M ++    D   Y  +ING C     + A+ +F ++KE+
Sbjct: 410 IVFDALCMLGKVEDAVEMVEEMKSKRLGLDVKHYTTLINGYCLQGDLVTAFNMFKEMKEK 469

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT----------------- 341
           G  PD V Y  +  GL + G   +  K+   M  +G+ PN  T                 
Sbjct: 470 GLKPDIVTYNVLAAGLSRNGHARETVKLLDFMESQGMKPNSTTHKMIIEGLCSGGKVLEA 529

Query: 342 --------------YNSMIHGYCRID---------------------------------- 353
                         Y++M++GYC  D                                  
Sbjct: 530 EVYFNSLEDKNIEIYSAMVNGYCETDLVKKSYEVFLKLLNQGDMAKKASCFKLLSKLCMT 589

Query: 354 -NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            ++E+A +L   ML      + + Y+ ++A LC  G    A  LF+    +G   DV+TY
Sbjct: 590 GDIEKAVKLLDRMLLSNVEPSKIMYSKILAALCQAGDMKNARTLFDVFVHRGFTPDVVTY 649

Query: 413 NTLIQGYCK 421
             +I  YC+
Sbjct: 650 TIMINSYCR 658


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 161/329 (48%), Gaps = 20/329 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F++++EA+  + +    D   FS         I    ESG + +A   F   +E 
Sbjct: 47  SASAVFEAILEAKGAQRS----DVYVFSG-------LITAYLESGFLHDALECFRLTREH 95

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
             +    T    L   +K+     VW  Y +++E GY         L+  FC +G++   
Sbjct: 96  KFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLA 155

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +  ++ + GL P   +FN L++ +    +      L   M      PD +TY  +ING
Sbjct: 156 QSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLING 215

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A  +F+++   G VP+ V +TT+I G CK G +  A + + EM+ +G  P+
Sbjct: 216 LCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPD 275

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+  +L++A+ L  EM  KG     +TY TLI G C  G  + A+   +
Sbjct: 276 LITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKK 335

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            M ++ I  D + Y  LI G C+EG+ V 
Sbjct: 336 RMIKENIRLDDVAYTALISGLCREGQSVG 364



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 143/316 (45%), Gaps = 12/316 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + +  ++ + FK    F         P SL  +   +   C+ G +  A   F ++
Sbjct: 103 TCRKVLEHFMKLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C + K+
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKM 222

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           ++  EL  +++ +GLVP    F  LI   C+  +     E    M+ +  +PD  TY  +
Sbjct: 223 NDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTL 282

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A K    MI + +
Sbjct: 283 IYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENI 342

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G CR      A+++ +EML  G      TY  +I   C  G       
Sbjct: 343 RLDDVAYTALISGLCREGQSVGAEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSK 402

Query: 396 LFEEMAQKGIFRDVIT 411
           L +EM + G    V+T
Sbjct: 403 LLKEMQRDGHVPCVVT 418



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 71/170 (41%), Gaps = 29/170 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GFSPDL++ N L   L +    K A D +D     G  P+  +    I   C+ G +E A
Sbjct: 271 GFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           F    K K+  +  +I+                       D +    LI   C +G+   
Sbjct: 331 F----KYKKRMIKENIRL----------------------DDVAYTALISGLCREGQSVG 364

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             ++LR++L  GL P+N  +  +I+ FC+K +    S+LL  M      P
Sbjct: 365 AEKMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVP 414


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/336 (28%), Positives = 161/336 (47%), Gaps = 15/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAF 158
           GF+P+  +  VL   L        A   L+     PNPN +     I      G ++EA 
Sbjct: 335 GFTPNSFTYGVLMHGLCRMGKVDEARMLLNKV---PNPNVVLFNTLINGYVSRGRLDEAK 391

Query: 159 CAFSK-LKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLY-----HDLIESGYLIQA 208
               + +  +G    I T+N+ +LG  K    +   +L+ ++       ++I    LI  
Sbjct: 392 AVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDR 451

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G++ E   +L ++   GL      +N LIS  C+ +       +   M ++   PD
Sbjct: 452 FCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPD 511

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  +I GLCK  K  EA  ++ D+   G + +T+ Y T+IH   + G + +A K+  
Sbjct: 512 IFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVN 571

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G   ++ TYN +I   CR  N+E+   L ++M+ KG     ++ N LI GLC  G
Sbjct: 572 DMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTG 631

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               A     +M  +G+  D++TYN+LI G CK G+
Sbjct: 632 NIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGR 667



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 17/338 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N     L +      A   +D     GF+PN  +  + +  LC  G ++EA
Sbjct: 300 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEA 359

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQ 207
               +K+    V      +N+ + G +   R D    + H          D+     LI 
Sbjct: 360 RMLLNKVPNPNVV----LFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLIL 415

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G +    EL+ ++   G  P    +  LI RFC++        +L  M  +  A 
Sbjct: 416 GLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLAL 475

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   Y  +I+ LCK  K  +A  +F D+  +G  PD   + ++I GLCK+    +A  ++
Sbjct: 476 NAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLY 535

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ +G++ N  TYN++IH + R   ++EA +L  +ML +G     +TYN LI  LC  
Sbjct: 536 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 595

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  ++   LFE+M  KG+  + I+ N LI G C+ G I
Sbjct: 596 GNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI 633



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 153/338 (45%), Gaps = 18/338 (5%)

Query: 101 GFSPDLVSCNVLF------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ + N L         LV AR     M+ +   G  PN  +  + I   C+ G +
Sbjct: 402 GCGPDIFTYNTLILGLCKKGYLVSAREL---MNEMQIKGCEPNVITYTILIDRFCKEGRL 458

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           EEA     ++   G+  +   +N  +    K ++      ++ D+   G          L
Sbjct: 459 EEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSL 518

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C   K  E   L + +L +G++     +N LI  F  +       +L++ M+ R  
Sbjct: 519 IFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 578

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D+ TY  +I  LC++    +   +F D+  +G  P+ +    +I+GLC+ G +  A +
Sbjct: 579 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 638

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
              +MIH+GL P+  TYNS+I+G C+    +EA  L  ++  +G     +TYNTLI+  C
Sbjct: 639 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHC 698

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             G  D+A+ L       G   + +T+  L+  + KEG
Sbjct: 699 KEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEG 736



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 167/377 (44%), Gaps = 32/377 (8%)

Query: 57  WEQTLLS-DIP----SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
           WE+ L   D+P    S     P    + L+   +V  S+  FQW  +  G+      C+ 
Sbjct: 75  WERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSMELFQWAGTQKGY------CH- 127

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           +FD       + + +D L + G     ++L + ++   + G++         +K  G  G
Sbjct: 128 MFD------VYYMLIDKLGAAGEFKTTDALLMQMK---QEGIVFRESLFILIMKHYGRAG 178

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV 231
                   LL    +   +  ++ Y+ +++   L+   C     +  YE+L +    G+ 
Sbjct: 179 LPGQATRLLLDMRGVYSCEPTFRSYNVVLD--VLLAGNCPKVVPNVFYEMLSK----GIS 232

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F  ++   C          LL  M      P+   Y+ +I+ L K  +  E  ++
Sbjct: 233 PTVYTFGVVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKL 292

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             ++   G +PD   +   IHGLCKM  + +A K+   M+ +G  PN +TY  ++HG CR
Sbjct: 293 LEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCR 352

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF-EEMAQKGIFRDVI 410
           +  ++EA+ L    L+K      V +NTLI G    GR DEA  +  E M   G   D+ 
Sbjct: 353 MGKVDEARML----LNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIF 408

Query: 411 TYNTLIQGYCKEGKIVN 427
           TYNTLI G CK+G +V+
Sbjct: 409 TYNTLILGLCKKGYLVS 425


>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g06920-like [Cucumis sativus]
          Length = 904

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 157/301 (52%), Gaps = 13/301 (4%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN ++  + I  LC++G +E A      +K+ G+F ++ T N  +    K  R D    +
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSI 466

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF-- 244
           +          D +    LI+     G+V E Y+L  Q+L+   +P    +  LI  F  
Sbjct: 467 FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C +K  G   ++ + M+    +PD       ++ + K+ +  +   +F ++K  G++PD 
Sbjct: 527 CGRKEDGH--KIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDA 584

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             YT +IHGL K G+  +A ++++ M  +G + +   YN++I G+C+   + +A +L +E
Sbjct: 585 RSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEE 644

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M  KG+  T VTY ++I GL    R DEAY LFEE   KGI  +V+ Y++LI G+ K G+
Sbjct: 645 MKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGR 704

Query: 425 I 425
           I
Sbjct: 705 I 705



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+L + N++ D L +A   + A+   D +   G  PN  ++ + +  LC++  +++A   
Sbjct: 407 PNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSI 466

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  L          T+ S + G  +  R D  +KLY  ++++           LI+ F  
Sbjct: 467 FEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFK 526

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+  +G+++  ++L  G  P+    N  +    +     +   L   +      PD  +
Sbjct: 527 CGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARS 586

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GL K+    EAY +F  +KE+G V DT  Y TVI G CK G +  A ++  EM 
Sbjct: 587 YTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK 646

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  P   TY S+I G  +ID L+EA  L +E   KG     V Y++LI G    GR D
Sbjct: 647 TKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRID 706

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EAY + EE+ QKG+  +V T+N L+    K  +I
Sbjct: 707 EAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEI 740



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 145/294 (49%), Gaps = 26/294 (8%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G SP+   L  Y+ C+ ++G IE+    F ++K +G     +++                
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTI-------------- 589

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             L H L+++G+            E YEL   + E G V +  A+N +I  FC+     +
Sbjct: 590 --LIHGLVKAGF----------AHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNK 637

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M  +   P   TY  VI+GL K  +  EAY +F + K +G   + V+Y+++I 
Sbjct: 638 AYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLID 697

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G  K+G + +A  +  E++ KGL PN YT+N ++    + + + EA    + M D     
Sbjct: 698 GFGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTP 757

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +TY+ LI GLC   + ++A+  ++EM ++G   +V TY T+I G  K G IV
Sbjct: 758 NYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIV 811



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/319 (26%), Positives = 147/319 (46%), Gaps = 18/319 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPDL+  N   D + +A      +     + + GF P+  S  + I  L ++G   EA
Sbjct: 544 GCSPDLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAHEA 603

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
           +  F  +KE G     + +N+ + G  K  + +  ++L  ++         +  G +I  
Sbjct: 604 YELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDG 663

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
                ++ E Y L  +    G+      ++ LI  F      GR+ E   ++  ++ +  
Sbjct: 664 LAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGF---GKVGRIDEAYLIMEELMQKGL 720

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+ +T+  +++ L K+ +  EA   F  +K+    P+ + Y+ +IHGLCK+     A  
Sbjct: 721 TPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLCKIRKFNKAFV 780

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            W EM  +G  PN +TY +MI G  +  N+ EA  L ++  +KG    +  YN +I GL 
Sbjct: 781 FWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADSAIYNAIIEGLS 840

Query: 386 LHGRTDEAYHLFEEMAQKG 404
              R  +AY LFEE   KG
Sbjct: 841 NANRASDAYRLFEEARLKG 859



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 174/432 (40%), Gaps = 50/432 (11%)

Query: 42  EIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQQNNVLLSIRFFQWLHSHY 100
           ++   VC+I  T P W  ++ + +   + N +P      L++  +V  ++ +F+W     
Sbjct: 66  QVIDSVCQILETGP-WGSSVENRLAELDLNPNPELVIGVLRRLKDVNNAVNYFRWAERLT 124

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
             +    + N L   +   R F      L+     GF P+ N+    +    +S  + EA
Sbjct: 125 DRAHCREAYNSLLMVMARTRKFNCLEQILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREA 184

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR-TDLVWKLYHDLIESGY---------LIQ 207
           F     ++++    +   + + L+G +   R +D +  L+  + E GY         LI+
Sbjct: 185 FTFIQTMRKLKFRPAFSAYTN-LIGALSTSRDSDCMLTLFQQMQELGYAVNVHLFTTLIR 243

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F  +G+V     LL ++  + L P+   +N  I  F +        +  H M A     
Sbjct: 244 VFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVL 303

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D+ TY  +I  LCK+ +  EA  +F  + +   VP    Y T+I G    G   DA  + 
Sbjct: 304 DDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKFEDAYSLL 363

Query: 328 ----------------------------------FEMIHKGLLPNEYTYNSMIHGYCRID 353
                                             FE + K  +PN  TYN MI   C+  
Sbjct: 364 ERQRRKGCIPSVVSYNCILSCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAG 423

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            LE A  +   M D G     +T N ++  LC   R D+A  +FE +  K    D +TY 
Sbjct: 424 KLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYC 483

Query: 414 TLIQGYCKEGKI 425
           +LI+G  + G++
Sbjct: 484 SLIEGLGRHGRV 495



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 137/296 (46%), Gaps = 12/296 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  S  +L   LV+A     A +    +   G   +  +    I   C+SG + +A
Sbjct: 579 GFIPDARSYTILIHGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKA 638

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           +    ++K  G   ++ T+ S + G  KIDR D  + L+ +    G          LI  
Sbjct: 639 YQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDG 698

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G++ E Y ++ ++++ GL P    +N L+    + +          +M      P+
Sbjct: 699 FGKVGRIDEAYLIMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPN 758

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK RK  +A+  + +++++G+ P+   YTT+I GL K G + +A  ++ 
Sbjct: 759 YITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAGNIVEADTLFE 818

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +   KG + +   YN++I G    +   +A RL +E   KG    T T   L+  L
Sbjct: 819 KFKEKGGVADSAIYNAIIEGLSNANRASDAYRLFEEARLKGCSIYTKTCVVLLDSL 874



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 156/332 (46%), Gaps = 21/332 (6%)

Query: 112 LFDSLVE--ARAFKV--AMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           LF +L+   AR  +V  A+  LD   S    P+     + I C  ++G ++ A+  F ++
Sbjct: 237 LFTTLIRVFAREGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEM 296

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-----IESGY----LIQAFCNDGKV 215
           K  G+     T+ S +    K DR +   +L+  +     +   Y    +I  +   GK 
Sbjct: 297 KANGLVLDDVTYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGKF 356

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTYE 273
            + Y LL +    G +P   ++N ++S    K   G+V E L     + ++  P+  TY 
Sbjct: 357 EDAYSLLERQRRKGCIPSVVSYNCILSCLGRK---GQVDEALKKFEEMKKDAIPNLSTYN 413

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+ LCK+ K   A  V + +K+ G  P+ +    ++  LCK   L DA  ++  + HK
Sbjct: 414 IMIDMLCKAGKLETALVVRDAMKDAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHK 473

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
              P+  TY S+I G  R   ++EA +L+++MLD       V Y +LI      GR ++ 
Sbjct: 474 TCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQMLDANQIPNAVVYTSLIRNFFKCGRKEDG 533

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++ EM + G   D++  NT +    K G+I
Sbjct: 534 HKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEI 565


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/334 (26%), Positives = 160/334 (47%), Gaps = 25/334 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           GF P++V+ N + D L +A+A   A                E  +Q + + G +EEA   
Sbjct: 169 GFPPNIVTYNSVIDGLCKAQAMDKA----------------EAVLQQMFDKGQLEEAVRL 212

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+   G+   + T++  +    KI R      ++  ++  G          L+  +  
Sbjct: 213 LKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYAT 272

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G + + ++LL  +++DG+  E+  FN LI  + + +   +       M  +  +P+  T
Sbjct: 273 KGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVT 332

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+ LCK+ +  +A   F+ +   G  PD + +T++IHGLC +G      K+ FEMI
Sbjct: 333 YTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMI 392

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           ++G+ PN    N+++   C+   + EA     +++  G     V+Y  LI G CL G+ D
Sbjct: 393 NRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMD 452

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E+  L   M   G+  D +TY+ L+ GYCK G++
Sbjct: 453 ESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRV 486



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 149/300 (49%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GFSPN  +    I  LC++G +E+A   FS++   G+   I T+ S + G   I     V
Sbjct: 325 GFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKV 384

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            KL  ++I  G          ++ + C +G+V E ++   Q++  G+ P+  ++  LI  
Sbjct: 385 EKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDG 444

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C         +LL  MV+    PDN TY  ++NG CK+ +  +A  ++ ++  +   P+
Sbjct: 445 YCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPN 504

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y  ++HGL   G +  AR+ + +++  G+     TYN ++ G C    ++EA R+ +
Sbjct: 505 AITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQ 564

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +  K +     T+N +I GL   GR  +A  LF  +   G+  D I Y  +IQ + +EG
Sbjct: 565 GLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEG 624



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 158/345 (45%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R  + + S  G  PD+V+ ++L D   +      A +  DS    G +P+  +    +
Sbjct: 209 AVRLLKKM-SGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLL 267

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
                 G + +     + + + G+      +N  +    K +  D     + ++ + G+ 
Sbjct: 268 HGYATKGALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKGFS 327

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   +I   C  G+V +      Q++ +GL P+   F  LI   C    + +V +L
Sbjct: 328 PNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKL 387

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M+ R   P+      +++ LCK  + LEA+  F+ +   G  PD V YT +I G C 
Sbjct: 388 SFEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCL 447

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + ++ K+   M+  GL P+  TY+++++GYC+   +++A  L++EM  K      +T
Sbjct: 448 DGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAIT 507

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN ++ GL   GR   A   + ++   GI   + TYN ++ G C+
Sbjct: 508 YNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCE 552



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 74/236 (31%), Positives = 104/236 (44%), Gaps = 44/236 (18%)

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           V KL  D    G LI+ FCN G       LL   LE                  E+    
Sbjct: 87  VNKLATDACTFGILIRCFCNVG-------LLDFALE------------------EESRGS 121

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           R +  +      N  P+  +Y  VINGL K  +  +AY +F+++  +G+ P+ V Y +VI
Sbjct: 122 RAAVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVI 181

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK   +  A  +  +M  KG                    LEEA RL K+M   G  
Sbjct: 182 DGLCKAQAMDKAEAVLQQMFDKG-------------------QLEEAVRLLKKMSGGGLQ 222

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              VTY+ LI   C  GR  EA ++F+ M ++G   D  TY TL+ GY  +G +V+
Sbjct: 223 PDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVD 278



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/294 (20%), Positives = 120/294 (40%), Gaps = 12/294 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ +  N + DSL +      A DF D     G  P+  S  + I   C  G ++E+
Sbjct: 395 GIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDES 454

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
                ++  +G+     T+++ L G  K  R D    LY ++         I    ++  
Sbjct: 455 IKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHG 514

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             + G+V    E   ++++ G+      +N ++   CE         +   + ++    +
Sbjct: 515 LFHAGRVVAAREFYMKIVDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLE 574

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I GL K  +  +A  +F+ +   G VPD ++Y  +I    + G L ++ +++ 
Sbjct: 575 VRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFL 634

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
            M   G   N  T N+++       ++  A     ++ +K Y     T   LI+
Sbjct: 635 SMEKNGCTANSRTLNAIVRKLLEKGDVRRAGTYLTKIDEKEYSVEASTAVLLIS 688


>gi|242067062|ref|XP_002454820.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
 gi|241934651|gb|EES07796.1| hypothetical protein SORBIDRAFT_04g038070 [Sorghum bicolor]
          Length = 600

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 166/401 (41%), Gaps = 48/401 (11%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA------- 125
           P +    L Q      ++R F  + +  G +PD  +C  L  +L  AR    A       
Sbjct: 117 PSWLVLVLAQSARPHDALRVFDQMRAR-GLAPDAHACTALLTALARARMTATARRVFDEM 175

Query: 126 -------------------------------MDFLDSTGFSPNPNSLELYIQCLCESGLI 154
                                          +  +D+ G   +  S    I   C+ G+ 
Sbjct: 176 ARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAGVPLDRFSYNTVIALYCKKGMR 235

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYL 205
            EA C   ++ + G+     TWNS + G  K  R     +L+ ++  +           L
Sbjct: 236 YEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAAQLFTEMAAAQATPDNVTYTTL 295

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C  G + E  +L  ++   G++P    +N ++ + CE      V++LL+ M  R  
Sbjct: 296 IDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKLCEDGKMKEVNQLLNEMDERKV 355

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D+ T   +IN  CK      A +V   + E G   +   Y  +IHG CK   L +A++
Sbjct: 356 QADHVTCNTLINAYCKRGHMTSACKVKKKMMESGLQLNQFTYKALIHGFCKAKELDEAKE 415

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            +F+M+  G  PN   ++ ++ G+C+ +N +    +  E++ +G       Y +LI  LC
Sbjct: 416 AFFQMVDAGFSPNYSVFSWLVDGFCKKNNADAVLLIPDELMKRGLPPDKAVYRSLIRRLC 475

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             G  D+A  +F++M  KG+  D + Y TL   Y  EGK V
Sbjct: 476 RKGLVDQAQKVFDQMQSKGLVGDSLVYATLAYTYLTEGKPV 516



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/223 (31%), Positives = 107/223 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A       +    +  ++   GL      +N ++    +  +  R   L+  M A  
Sbjct: 155 LLTALARARMTATARRVFDEMARAGLAVSTHVYNAMLHVCLKAGDAARAEALVTRMDAAG 214

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D F+Y  VI   CK   R EA  V + + + G   DTV + ++IHGLCK G + +A 
Sbjct: 215 VPLDRFSYNTVIALYCKKGMRYEAMCVRDRMDKEGIRADTVTWNSLIHGLCKYGRVKEAA 274

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +++ EM      P+  TY ++I GYCR  N+EEA +L  EM   G      TYN ++  L
Sbjct: 275 QLFTEMAAAQATPDNVTYTTLIDGYCRAGNIEEAVKLRGEMEATGMLPGVATYNAILRKL 334

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C  G+  E   L  EM ++ +  D +T NTLI  YCK G + +
Sbjct: 335 CEDGKMKEVNQLLNEMDERKVQADHVTCNTLINAYCKRGHMTS 377


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 148/301 (49%), Gaps = 13/301 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+    +  I  LC+ G + EA    +++  MG    + T++  + G   + R    
Sbjct: 189 GCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREA 248

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L   ++  G         +L+Q  C   +  E   +L +V E  +V     FN +I  
Sbjct: 249 ARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV----LFNTVIGG 304

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
              +      +EL  TM  +   PD  TY  +++GLCK  +   A R+  +++++G+ P+
Sbjct: 305 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 364

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT V+H  CK G   D R +  EM  KGL  N   YN MI+  C+   ++EA  L +
Sbjct: 365 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 424

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  +G      +YNT+I  LC + + +EA H+FE + ++G+  + ITYNT+I    ++G
Sbjct: 425 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 484

Query: 424 K 424
           +
Sbjct: 485 R 485



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 13/309 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D + + G  P   +    +Q LC     +EA     ++ E+ V      +N+ + GC+ 
Sbjct: 252 VDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV----LFNTVIGGCLA 307

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             +     +LY  +   G          L+   C  G++     LLR++ + G  P    
Sbjct: 308 EGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVT 367

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +  ++  FC+   +     LL  M A+    ++  Y  +I  LCK  +  EA  +  +++
Sbjct: 368 YTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMR 427

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +G  PD   Y T+I+ LC    + +A  M+  ++ +G++ N  TYN++IH   R    +
Sbjct: 428 SQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQ 487

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +A RL KEM+  G     V+YN LI  +C  G  D +  L EEMA+KGI  + ++YN LI
Sbjct: 488 DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILI 547

Query: 417 QGYCKEGKI 425
              CKE ++
Sbjct: 548 SELCKERRV 556



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 10/286 (3%)

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
           CL E G + EA   +  +   G      T++  + G  K+ R     +L  ++ + G+  
Sbjct: 305 CLAE-GKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAP 363

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  ++ +FC +G   +   LL ++   GL   +  +N +I   C+         L+
Sbjct: 364 NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLI 423

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M ++   PD  +Y  +I  LC + +  EA  +F +L E G V + + Y T+IH L + 
Sbjct: 424 QEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRD 483

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA ++  EMI  G   +  +YN +I   C+  N++ +  L +EM +KG     V+Y
Sbjct: 484 GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSY 543

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           N LI+ LC   R  +A  L ++M  +G+  D++TYNTLI G CK G
Sbjct: 544 NILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMG 589



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 9/298 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+ ++  + +  LC+ G I  A     ++++ G   ++ T+   L    K    D  
Sbjct: 325 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 384

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L  ++   G          +I A C DG++ E   L++++   G  P+  ++N +I  
Sbjct: 385 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 444

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C  +       +   ++      +  TY  +I+ L +  +  +A R+  ++   G   D
Sbjct: 445 LCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLD 504

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y  +I  +CK G +  +  +  EM  KG+ PN  +YN +I   C+   + +A  L K
Sbjct: 505 VVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK 564

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +ML++G     VTYNTLI GLC  G    A +L E++  + +  D+ITYN LI  +CK
Sbjct: 565 QMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 622



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 120/254 (47%), Gaps = 31/254 (12%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G   +A C  G+  E   LLR +   G VP+   +  +I   C++      + LL+ M+ 
Sbjct: 163 GVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLL 222

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----- 317
              A D  T+++V+ G+C   +  EA R+ + +  +G +P  + Y  ++ GLC++     
Sbjct: 223 MGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADE 282

Query: 318 --------------------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
                                     G L +A +++  M  KG  P+ +TY+ ++HG C+
Sbjct: 283 ARAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCK 342

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +  +  A RL +EM  KG+    VTY  ++   C +G  D+   L EEM+ KG+  +   
Sbjct: 343 LGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQG 402

Query: 412 YNTLIQGYCKEGKI 425
           YN +I   CK+G++
Sbjct: 403 YNGMIYALCKDGRM 416



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 135/273 (49%), Gaps = 12/273 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++V+  ++  S  +   +   +  ++ + + G + N       I  LC+ G ++EA
Sbjct: 360 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEA 419

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++  G    I ++N+ +      ++ +    ++ +L+E G          +I A
Sbjct: 420 MGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHA 479

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              DG+  +   L ++++  G   +  ++N LI   C+  N  R   LL  M  +   P+
Sbjct: 480 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 539

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N +Y  +I+ LCK R+  +A  +   +  +G  PD V Y T+I+GLCKMGW+  A  +  
Sbjct: 540 NVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLE 599

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           ++ ++ + P+  TYN +I  +C++  L++A  L
Sbjct: 600 KLHNENVHPDIITYNILISWHCKVRLLDDAAML 632



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/203 (30%), Positives = 90/203 (44%), Gaps = 4/203 (1%)

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           R V  D + P    F       C          LL  M      PD   Y+ VI+ LC  
Sbjct: 148 RMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQ 207

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               EA  + N++   G   D   +  V+ G+C +G + +A ++   M+ KG +P   TY
Sbjct: 208 GGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTY 267

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             ++ G CR+   +EA    + ML +      V +NT+I G    G+  EA  L+E M  
Sbjct: 268 GFLLQGLCRVRQADEA----RAMLGRVPELNVVLFNTVIGGCLAEGKLAEATELYETMGL 323

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KG   D  TY+ L+ G CK G+I
Sbjct: 324 KGCQPDAHTYSILMHGLCKLGRI 346



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 138/309 (44%), Gaps = 12/309 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + ++L   L +      A+  L   +  GF+PN  +  + +   C++G+ ++ 
Sbjct: 325 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 384

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G+  + + +N  +    K  R D    L  ++   G          +I  
Sbjct: 385 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 444

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN+ ++ E   +   +LE+G+V     +N +I        +     L   M+    + D
Sbjct: 445 LCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLD 504

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I  +CK      +  +  ++ E+G  P+ V Y  +I  LCK   + DA ++  
Sbjct: 505 VVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK 564

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+++GL P+  TYN++I+G C++  +  A  L +++ ++      +TYN LI+  C   
Sbjct: 565 QMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVR 624

Query: 389 RTDEAYHLF 397
             D+A  L 
Sbjct: 625 LLDDAAMLL 633



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 44/209 (21%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + S G +P+  S    I  LC +  +EEA   F  L E GV  +  T+N+ +   ++  R
Sbjct: 426 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGR 485

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDG-------------------------- 213
                +L  ++I  G          LI+A C DG                          
Sbjct: 486 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 545

Query: 214 ---------KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
                    +V +  EL +Q+L  GL P+   +N LI+  C+         LL  +   N
Sbjct: 546 LISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEN 605

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             PD  TY  +I+  CK R   +A  + N
Sbjct: 606 VHPDIITYNILISWHCKVRLLDDAAMLLN 634


>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 11/301 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ++G  PN       I+   ++    +A     ++KE G+   I  +NS ++G  K  R D
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGY----------ELLRQVLEDGLVPENTAFNKL 240
                  +++E+G    AF     +S GY          + ++++ E G++P       L
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFIS-GYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+ +C+K+          +MV +    D  TY  ++NGL K+ K  +A  +F +++ +G 
Sbjct: 564 INEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD   Y  +I+G  K+G +  A  ++ EM+ +GL PN   YN ++ G+CR   +E+AK 
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  EM  KG     VTY T+I G C  G   EA+ LF+EM  KG+  D   Y TL+ G C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 421 K 421
           +
Sbjct: 744 R 744



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/373 (26%), Positives = 159/373 (42%), Gaps = 50/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +        +EA  F  A  ++      G  PN       I   C+   + EA
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEA 576

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             A+  + + G+ G  KT+   + G  K D+ D   +++          D+   G LI  
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + +   +  +++E+GL P    +N L+  FC      +  ELL  M  +   P+
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM-- 326
             TY  +I+G CKS    EA+R+F+++K +G VPD+ +YTT++ G C++  +  A  +  
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756

Query: 327 ------------------WFEMIHKGLL------------------PNEYTYNSMIHGYC 350
                             W     K  L                  PN+ TYN MI   C
Sbjct: 757 TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +  NLE AK L  +M +     T +TY +L+ G    GR  E + +F+E    GI  D I
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHI 876

Query: 411 TYNTLIQGYCKEG 423
            Y+ +I  + KEG
Sbjct: 877 MYSVIINAFLKEG 889



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 186/437 (42%), Gaps = 54/437 (12%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSF-----NFNDPLFFREFLKQQNNVLLSIRFFQ 94
           Y  +   +CKI R +    ++LL ++ S      N    L     LK +N         +
Sbjct: 280 YDVLIDGLCKIKRLED--AKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 95  WLHSHYGFSPDLVSCN--VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
            +       P +  C   V+    V  +A K   D + ++G  P   +    I+  C   
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKA-KALFDGMIASGLIPQAQAYASLIEGYCREK 396

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------- 203
            + + +    ++K+  +  S  T+ + + G       D  + +  ++I SG         
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI+ F  + +  +   +L+++ E G+ P+   +N LI    + K        L  MV  
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN 516

Query: 264 NRAPDNFTYEEVINGL-----------------------------------CKSRKRLEA 288
              P+ FTY   I+G                                    CK  K +EA
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKEKVIEA 576

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              +  + ++G + D   YT +++GL K   + DA +++ EM  KG+ P+ ++Y  +I+G
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           + ++ N+++A  +  EM+++G     + YN L+ G C  G  ++A  L +EM+ KG+  +
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 409 VITYNTLIQGYCKEGKI 425
            +TY T+I GYCK G +
Sbjct: 697 AVTYCTIIDGYCKSGDL 713



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 141/303 (46%), Gaps = 9/303 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P   + ++ I  LC+   +E+A     ++  +GV     T++  + G +K    D  
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 193 WKLYHDLIESGYLIQAFCND---------GKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L H+++  G  I+ +  D         G + +   L   ++  GL+P+  A+  LI  
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C +KN  +  ELL  M  RN     +TY  V+ G+C S     AY +  ++   G  P+
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V+YTT+I    +    GDA ++  EM  +G+ P+ + YNS+I G  +   ++EA+    
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM++ G      TY   I+G         A    +EM + G+  + +    LI  YCK+ 
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKE 571

Query: 424 KIV 426
           K++
Sbjct: 572 KVI 574



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 150/336 (44%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V    L  + ++   F  AM  L      G +P+       I  L ++  ++EA
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                ++ E G+  +  T+ + + G I+        K   ++ E G L         I  
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   KV E     R +++ G++ +   +  L++   +        E+   M  +  APD
Sbjct: 567 YCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F+Y  +ING  K     +A  +F+++ E G  P+ ++Y  ++ G C+ G +  A+++  
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL PN  TY ++I GYC+  +L EA RL  EM  KG    +  Y TL+ G C   
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLN 746

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             + A  +F    +KG       +N LI    K GK
Sbjct: 747 DVERAITIFGT-NKKGCASSTAPFNALINWVFKFGK 781



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 130/303 (42%), Gaps = 30/303 (9%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           G IEEA   FS    + +   +      L   ++ +R DL W +Y  ++E          
Sbjct: 165 GYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224

Query: 205 --LIQAFCNDGKVSEGYELL---------------------RQVLEDGLVPENTAFNKLI 241
             LI A C  G V  G ++L                       ++  GLVP    ++ LI
Sbjct: 225 HMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLI 284

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+ K       LL  M +   + DN TY  +I+GL K R    A  + +++   G  
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
               MY   I  + K G +  A+ ++  MI  GL+P    Y S+I GYCR  N+ +   L
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             EM  +    +  TY T++ G+C  G  D AY++ +EM   G   +V+ Y TLI+ + +
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464

Query: 422 EGK 424
             +
Sbjct: 465 NSR 467



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 20/306 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+++  N+L      +   + A + LD     G  PN  +    I   C+SG + EA
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY--------HDLIESGYLIQAF 209
           F  F ++K  G+      + + + GC +++  +    ++                LI   
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWV 776

Query: 210 CNDGKVSEGYELLRQVLEDGL----VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
              GK     E+L ++++        P +  +N +I   C++ N     EL H M   N 
Sbjct: 777 FKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANL 836

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  ++NG  K  +R E + VF++    G  PD +MY+ +I+   K G    A  
Sbjct: 837 MPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALV 896

Query: 326 MWFEMIHKGLLPNE-----YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
           +  +M  K  + +       T  +++ G+ ++  +E A+++ + M+   Y   + T   L
Sbjct: 897 LVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIEL 956

Query: 381 IAGLCL 386
           I   C+
Sbjct: 957 INESCI 962



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 122/301 (40%), Gaps = 32/301 (10%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK--IDRTDLVWKLYHDLIESGYL 205
           LC  G  E+A     ++ E   +   + W S+++ C +  + ++D       D +  G L
Sbjct: 107 LCNFGSFEKALSVVERMIERN-WPVAEVW-SSIVRCSQEFVGKSD-------DGVLFGIL 157

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
              +   G + E   +    +   LVP  +    L+             ++   MV RN 
Sbjct: 158 FDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNV 217

Query: 266 APDNFTYEEVINGLC-------------KSRKRLEAYRVFND----LKE----RGYVPDT 304
             D  TY  +I   C             K+ K      +  D    LKE    +G VP  
Sbjct: 218 VFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLK 277

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y  +I GLCK+  L DA+ +  EM   G+  + +TY+ +I G  +  N + AK L  E
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M+  G       Y+  I  +   G  ++A  LF+ M   G+      Y +LI+GYC+E  
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 425 I 425
           +
Sbjct: 398 V 398



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I  LC+ G +E A   F +++   +  ++ T+ S L G  K+ R   ++ +
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQV-----LEDGLVPENTAFNKLI 241
           + + I +G          +I AF  +G  ++   L+ Q+     ++DG     +    L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC-KSRKRLEAYRV 291
           S F +        +++  MV     PD+ T  E+IN  C  S +R+EA  V
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 148/301 (49%), Gaps = 13/301 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+    +  I  LC+ G + EA    +++  MG    + T++  + G   + R    
Sbjct: 205 GCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREA 264

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L   ++  G         +L+Q  C   +  E   +L +V E  +V     FN +I  
Sbjct: 265 ARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV----LFNTVIGG 320

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
              +      +EL  TM  +   PD  TY  +++GLCK  +   A R+  +++++G+ P+
Sbjct: 321 CLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPN 380

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT V+H  CK G   D R +  EM  KGL  N   YN MI+  C+   ++EA  L +
Sbjct: 381 VVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQ 440

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  +G      +YNT+I  LC + + +EA H+FE + ++G+  + ITYNT+I    ++G
Sbjct: 441 EMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDG 500

Query: 424 K 424
           +
Sbjct: 501 R 501



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 13/309 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D + + G  P   +    +Q LC     +EA     ++ E+ V      +N+ + GC+ 
Sbjct: 268 VDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELNVV----LFNTVIGGCLA 323

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             +     +LY  +   G          L+   C  G++     LLR++ + G  P    
Sbjct: 324 EGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVT 383

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +  ++  FC+   +     LL  M A+    ++  Y  +I  LCK  +  EA  +  +++
Sbjct: 384 YTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMR 443

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +G  PD   Y T+I+ LC    + +A  M+  ++ +G++ N  TYN++IH   R    +
Sbjct: 444 SQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQ 503

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +A RL KEM+  G     V+YN LI  +C  G  D +  L EEMA+KGI  + ++YN LI
Sbjct: 504 DAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILI 563

Query: 417 QGYCKEGKI 425
              CKE ++
Sbjct: 564 SELCKERRV 572



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 139/286 (48%), Gaps = 10/286 (3%)

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
           CL E G + EA   +  +   G      T++  + G  K+ R     +L  ++ + G+  
Sbjct: 321 CLAE-GKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAP 379

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  ++ +FC +G   +   LL ++   GL   +  +N +I   C+         L+
Sbjct: 380 NVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLI 439

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M ++   PD  +Y  +I  LC + +  EA  +F +L E G V + + Y T+IH L + 
Sbjct: 440 QEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRD 499

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA ++  EMI  G   +  +YN +I   C+  N++ +  L +EM +KG     V+Y
Sbjct: 500 GRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSY 559

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           N LI+ LC   R  +A  L ++M  +G+  D++TYNTLI G CK G
Sbjct: 560 NILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMG 605



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/298 (26%), Positives = 139/298 (46%), Gaps = 9/298 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+ ++  + +  LC+ G I  A     ++++ G   ++ T+   L    K    D  
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L  ++   G          +I A C DG++ E   L++++   G  P+  ++N +I  
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 460

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C  +       +   ++      +  TY  +I+ L +  +  +A R+  ++   G   D
Sbjct: 461 LCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLD 520

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y  +I  +CK G +  +  +  EM  KG+ PN  +YN +I   C+   + +A  L K
Sbjct: 521 VVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK 580

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +ML++G     VTYNTLI GLC  G    A +L E++  + +  D+ITYN LI  +CK
Sbjct: 581 QMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCK 638



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 135/302 (44%), Gaps = 41/302 (13%)

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----------GYLIQAFCNDGK 214
           +  GV  S +++N  L    + D       LY  ++            G   +A C  G+
Sbjct: 131 RRFGVQPSFRSYNVVLSVLARADCHADALALYRRMVHRDRVPPTTFTFGVAARALCRLGR 190

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
             E   LLR +   G VP+   +  +I   C++      + LL+ M+    A D  T+++
Sbjct: 191 ADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDD 250

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----------------- 317
           V+ G+C   +  EA R+ + +  +G +P  + Y  ++ GLC++                 
Sbjct: 251 VVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAMLGRVPELN 310

Query: 318 --------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
                         G L +A +++  M  KG  P+ +TY+ ++HG C++  +  A RL +
Sbjct: 311 VVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLR 370

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  KG+    VTY  ++   C +G  D+   L EEM+ KG+  +   YN +I   CK+G
Sbjct: 371 EMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDG 430

Query: 424 KI 425
           ++
Sbjct: 431 RM 432



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/273 (24%), Positives = 135/273 (49%), Gaps = 12/273 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P++V+  ++  S  +   +   +  ++ + + G + N       I  LC+ G ++EA
Sbjct: 376 GFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEA 435

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++  G    I ++N+ +      ++ +    ++ +L+E G          +I A
Sbjct: 436 MGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHA 495

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              DG+  +   L ++++  G   +  ++N LI   C+  N  R   LL  M  +   P+
Sbjct: 496 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 555

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N +Y  +I+ LCK R+  +A  +   +  +G  PD V Y T+I+GLCKMGW+  A  +  
Sbjct: 556 NVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLE 615

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           ++ ++ + P+  TYN +I  +C++  L++A  L
Sbjct: 616 KLHNENVHPDIITYNILISWHCKVRLLDDAAML 648



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 69/309 (22%), Positives = 138/309 (44%), Gaps = 12/309 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + ++L   L +      A+  L   +  GF+PN  +  + +   C++G+ ++ 
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G+  + + +N  +    K  R D    L  ++   G          +I  
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYH 460

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN+ ++ E   +   +LE+G+V     +N +I        +     L   M+    + D
Sbjct: 461 LCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLD 520

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I  +CK      +  +  ++ E+G  P+ V Y  +I  LCK   + DA ++  
Sbjct: 521 VVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCKERRVRDALELSK 580

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+++GL P+  TYN++I+G C++  +  A  L +++ ++      +TYN LI+  C   
Sbjct: 581 QMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVR 640

Query: 389 RTDEAYHLF 397
             D+A  L 
Sbjct: 641 LLDDAAMLL 649



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 52/209 (24%), Positives = 80/209 (38%), Gaps = 44/209 (21%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + S G +P+  S    I  LC +  +EEA   F  L E GV  +  T+N+ +   ++  R
Sbjct: 442 MRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGR 501

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDG-------------------------- 213
                +L  ++I  G          LI+A C DG                          
Sbjct: 502 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 561

Query: 214 ---------KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
                    +V +  EL +Q+L  GL P+   +N LI+  C+         LL  +   N
Sbjct: 562 LISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEN 621

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             PD  TY  +I+  CK R   +A  + N
Sbjct: 622 VHPDIITYNILISWHCKVRLLDDAAMLLN 650


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/335 (28%), Positives = 165/335 (49%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  + VS   L + + +    + A+  L   D     PN       I  LC+  L+ EA
Sbjct: 159 GFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEA 218

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES--------GYLIQA 208
           +  FS++   G+   + T+++ + G CI+    + +  L   ++++          L+ A
Sbjct: 219 YGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDA 278

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GKV E   +L  +L+  + P+   ++ L+  +       +   + + M      PD
Sbjct: 279 LCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPD 338

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +ING CK++   EA  +F ++ ++  VP  V Y+++I GLCK G +     +  
Sbjct: 339 VHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLID 398

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G   N  TY+S+I G C+  +L+ A  L  +M D+G    T T+  L+ GLC  G
Sbjct: 399 EMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGG 458

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R  +A  +F+++  KG   +V TYN +I G+CK+G
Sbjct: 459 RLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQG 493



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 152/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ N L   L      K A+ F D   + GF  N  S    I  +C+ G    A
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAA 183

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+       ++  +++ +    K       + L+          D++    LI  
Sbjct: 184 IKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 243

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +GK+ E   LL +++   + P    +N L+   C++        +L  M+     PD
Sbjct: 244 FCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD 303

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G     +  +A  VFN +   G  PD   YT +I+G CK   + +A  ++ 
Sbjct: 304 VITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFK 363

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K ++P   TY+S+I G C+   +     L  EM D+G     +TY++LI GLC +G
Sbjct: 364 EMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNG 423

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  LF +M  +GI  +  T+  L+ G CK G++
Sbjct: 424 HLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRL 460



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 138/278 (49%), Gaps = 15/278 (5%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +++A   F+++  M     I  +N  L    K+        L H         DLI    
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH---TMV 261
           LI  FC+ G+++ G+ +L ++L+ G  P+    N LI   C K   G+V + LH    ++
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLK---GQVKKALHFHDKLL 156

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A+    +  +Y  +ING+CK      A ++   +  R   P+ VMY+T+I  LCK   + 
Sbjct: 157 AQGFQLNQVSYGTLINGVCKIGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVS 216

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  ++ EM  KG+  +  TY+++I+G+C    L+EA  L  EM+ K       TYN L+
Sbjct: 217 EAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             LC  G+  EA  +   M +  +  DVITY+TL+ GY
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 103/194 (53%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FNK++  F + K++     L H +  +   PD  T   +IN  C   +    + V
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + +RGY PDTV   T+I GLC  G +  A     +++ +G   N+ +Y ++I+G C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCK 176

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           I +   A +L +++  +      V Y+T+I  LC +    EAY LF EM  KGI  DV+T
Sbjct: 177 IGDTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVT 236

Query: 412 YNTLIQGYCKEGKI 425
           Y+TLI G+C EGK+
Sbjct: 237 YSTLIYGFCIEGKL 250



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 117/226 (51%), Gaps = 8/226 (3%)

Query: 198  DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
            DL     LI  FC+ G+++  + +L ++L+ G  P+   F  LI+  C K   G+V++ L
Sbjct: 960  DLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLK---GQVNKAL 1016

Query: 258  H---TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            H    ++A+    +  +Y  +ING+CK      A ++   +  R   PD VMY T+I  L
Sbjct: 1017 HFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDAL 1076

Query: 315  CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            CK   +  A  ++FEM  KG+  +  TYN++I+G+C +  L+EA  L  +M+ K      
Sbjct: 1077 CKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPNV 1136

Query: 375  VTYNTLIAGLCLHGRT--DEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             TYN L+  LC  G+   DE+  +  +M   G   + +T+  +I  
Sbjct: 1137 RTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISA 1182



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 98/178 (55%)

Query: 248  KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
            K++     L H +  +   PD FT   +IN  C   +    + +   + +RGY PDT+ +
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 308  TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            TT+I+GLC  G +  A     +++ +G   N+ +Y ++I+G C+I +   A +L +++  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDG 1059

Query: 368  KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +      V YNT+I  LC H    +AY LF EM  KGI  DV+TYNTLI G+C  GK+
Sbjct: 1060 RLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKL 1117



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +I+   ++ +F      S    L  ++   G+ P+    N LI+ FC          +L 
Sbjct: 59  IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLA 118

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            ++ R   PD  T   +I GLC   +  +A    + L  +G+  + V Y T+I+G+CK+G
Sbjct: 119 KILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIG 178

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A K+  ++  +   PN   Y+++I   C+   + EA  L  EM  KG     VTY+
Sbjct: 179 DTRAAIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYS 238

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G C+ G+  EA  L  EM  K I  +V TYN L+   CKEGK+
Sbjct: 239 TLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKV 285



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/196 (34%), Positives = 100/196 (51%)

Query: 229  GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
            G+ P+    N LI+ FC          +L  ++ R   PD  T+  +INGLC   +  +A
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 289  YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                + L  +G+  + V Y T+I+G+CK+G    A K+  ++  +   P+   YN++I  
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDA 1075

Query: 349  YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
             C+   + +A  L  EM  KG     VTYNTLI G C+ G+  EA  L  +M  K I  +
Sbjct: 1076 LCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPN 1135

Query: 409  VITYNTLIQGYCKEGK 424
            V TYN L+   CKEGK
Sbjct: 1136 VRTYNILVDALCKEGK 1151



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 30/281 (10%)

Query: 129  LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
            L+  G  P+  +L + I C C  G I   F   +K+ + G                    
Sbjct: 952  LELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRG-------------------- 991

Query: 189  TDLVWKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
                   YH D I    LI   C  G+V++      ++L  G      ++  LI+  C+ 
Sbjct: 992  -------YHPDTITFTTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKI 1044

Query: 248  KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
             +     +LL  +  R   PD   Y  +I+ LCK +   +AY +F ++  +G   D V Y
Sbjct: 1045 GDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTY 1104

Query: 308  TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR--IDNLEEAKRLHKEM 365
             T+I+G C +G L +A  +  +M+ K + PN  TYN ++   C+   D L+E+  +  +M
Sbjct: 1105 NTLIYGFCIVGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKM 1164

Query: 366  LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
             D G     VT+  +I+ L      D+   L  EM  +G+ 
Sbjct: 1165 EDNGCKANAVTFEIIISALFEKDENDKVEKLLHEMIARGLL 1205



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/246 (21%), Positives = 111/246 (45%), Gaps = 16/246 (6%)

Query: 104 PDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++ + L D    + E +  +   + +   G +P+ ++  + I   C++ +++EA   
Sbjct: 302 PDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNL 361

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F ++ +  +   I T++S + G  K  R   VW L  ++ + G          LI   C 
Sbjct: 362 FKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCK 421

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G +     L  ++ + G+ P    F  L+   C+        E+   ++ +    + +T
Sbjct: 422 NGHLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYT 481

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----GWLGDARKMW 327
           Y  +I+G CK     EA  + + +++ G +PD V +  +I  L K     G +G  +K+W
Sbjct: 482 YNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDAVTFEIIIIALFKKDENGGNVGFDKKVW 541

Query: 328 FEMIHK 333
             + HK
Sbjct: 542 EIVEHK 547



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN +    + P  + +  ++    KM     A  +   +  KG+ P+  T N +I
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C +  +     +  ++L +GY   TVT NTLI GLCL G+  +A H  +++  +G  
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 407 RDVITYNTLIQGYCKEG 423
            + ++Y TLI G CK G
Sbjct: 162 LNQVSYGTLINGVCKIG 178



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 101/250 (40%), Gaps = 14/250 (5%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
            G  PDL + N+L +              L      G+ P+  +    I  LC  G + +A
Sbjct: 956  GIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKA 1015

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 KL   G   +  ++ + + G  KI  T    KL           D++    +I A
Sbjct: 1016 LHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDA 1075

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             C    VS+ Y L  ++   G+  +   +N LI  FC          LL+ MV +   P+
Sbjct: 1076 LCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNKMVLKTINPN 1135

Query: 269  NFTYEEVINGLCKSRKRL--EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
              TY  +++ LCK  K L  E+  + + +++ G   + V +  +I  L +        K+
Sbjct: 1136 VRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISALFEKDENDKVEKL 1195

Query: 327  WFEMIHKGLL 336
              EMI +GLL
Sbjct: 1196 LHEMIARGLL 1205



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 86/199 (43%), Gaps = 19/199 (9%)

Query: 84   NNVLLSIRFFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFS 135
            N + L  +  + LH H      GF  + VS   L + + +    + A+  L   D     
Sbjct: 1004 NGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTK 1063

Query: 136  PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWK 194
            P+       I  LC+  L+ +A+  F ++   G+   + T+N+ + G CI     + +  
Sbjct: 1064 PDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCIVGKLKEAIGL 1123

Query: 195  LYHDLIES--------GYLIQAFCNDGK--VSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            L   ++++          L+ A C +GK  + E   +L ++ ++G       F  +IS  
Sbjct: 1124 LNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANAVTFEIIISAL 1183

Query: 245  CEKKNFGRVSELLHTMVAR 263
             EK    +V +LLH M+AR
Sbjct: 1184 FEKDENDKVEKLLHEMIAR 1202



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA   +  M+     P    +N ++  + ++ +   A  L   +  KG     +T N LI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C  G+    + +  ++ ++G   D +T NTLI+G C +G++
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQV 145


>gi|14488297|gb|AAK63878.1|AC074105_7 Putative salt-inducible protein [Oryza sativa]
 gi|222612440|gb|EEE50572.1| hypothetical protein OsJ_30721 [Oryza sativa Japonica Group]
          Length = 854

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 109/373 (29%), Positives = 172/373 (46%), Gaps = 49/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVAM--DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N+L + L  E R  +  M  D +   G   N  +  + I    ++G +E A
Sbjct: 291 GCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEVNTITFNVLIDGYAKAGQMENA 350

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---WKLYHDLIES-------GYLIQ 207
             A +++K MG+     T+N    G  K  +  L     +  H++  S         LI 
Sbjct: 351 NMACAEMKAMGLMPDCCTFNILSAGAYKFGKAALFVLDQQQLHEMFGSQLSTDGIDMLIC 410

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C DG++ + +ELL   +E G+    + FN LI+ + ++       EL  TM     AP
Sbjct: 411 RLCWDGRLDDAWELLCSAIEKGVQVSVSGFNALIAAYSKEGFDEEAFELYKTMNKLGLAP 470

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVF----------------------------------- 292
            + T   +I GLC +R RL+  R+F                                   
Sbjct: 471 SSSTLNYLIMGLC-NRGRLDQARLFLEYMVRMGYCVIASFTIYLDSSFRAGDVLGALKCW 529

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +D+K  G  PD V ++  ++GLC++ +L +A   + EMI +GL+PN +TYNS+I  +CR 
Sbjct: 530 DDMKIVGLQPDFVAFSAYVNGLCRLDFLDEAYNGFIEMIRRGLVPNNFTYNSLISAFCRA 589

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N+ EA +L ++M   G      T N LI G C  G  + A +LF  M   G+  DV+TY
Sbjct: 590 GNVSEALKLEQKMRQSGLVPDIFTRNILIDGFCREGGLNTANNLFFGMYSIGLTPDVVTY 649

Query: 413 NTLIQGYCKEGKI 425
           NT++  YC+   I
Sbjct: 650 NTMLNAYCRSKDI 662



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 150/342 (43%), Gaps = 15/342 (4%)

Query: 94  QWLHSHYGF-----SPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           Q LH  +G        D++ C + +D  ++  A+++    ++  G   + +     I   
Sbjct: 390 QQLHEMFGSQLSTDGIDMLICRLCWDGRLD-DAWELLCSAIEK-GVQVSVSGFNALIAAY 447

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-LIQ 207
            + G  EEAF  +  + ++G+  S  T N  ++G     R D        ++  GY +I 
Sbjct: 448 SKEGFDEEAFELYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQARLFLEYMVRMGYCVIA 507

Query: 208 AFC-------NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
           +F          G V    +    +   GL P+  AF+  ++  C              M
Sbjct: 508 SFTIYLDSSFRAGDVLGALKCWDDMKIVGLQPDFVAFSAYVNGLCRLDFLDEAYNGFIEM 567

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           + R   P+NFTY  +I+  C++    EA ++   +++ G VPD      +I G C+ G L
Sbjct: 568 IRRGLVPNNFTYNSLISAFCRAGNVSEALKLEQKMRQSGLVPDIFTRNILIDGFCREGGL 627

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A  ++F M   GL P+  TYN+M++ YCR  ++  A     +ML  G      TYN  
Sbjct: 628 NTANNLFFGMYSIGLTPDVVTYNTMLNAYCRSKDINGAMIFMNKMLADGCEPDIFTYNIW 687

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +  LC +   + A  L +E+A      + +TYNTL+ G C +
Sbjct: 688 MHSLCSNHLLNRAMMLLDELAATDCAPNSVTYNTLMDGICSD 729



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/140 (36%), Positives = 77/140 (55%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A++VF ++  RG  P+  ++  +I GLC  G +  +  +   M    ++P+  +YN ++ 
Sbjct: 210 AWKVFEEMAARGPRPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSYNILMK 269

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G+C     E+A  L  EM   G   T VTYN L+  LC  GR  EA  LF+EM Q G+  
Sbjct: 270 GHCLYGQAEDAFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEV 329

Query: 408 DVITYNTLIQGYCKEGKIVN 427
           + IT+N LI GY K G++ N
Sbjct: 330 NTITFNVLIDGYAKAGQMEN 349



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 126/295 (42%), Gaps = 16/295 (5%)

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            L +     +G+ +EA    ++++  G   S+    + L    +       WK++ ++  
Sbjct: 160 RLALHAFLAAGMADEALDVLARVRRAGDTPSLSALAALLRLLFRGGEVRAAWKVFEEMAA 219

Query: 202 SG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          +I   C+ G V     LL  +    +VP+  ++N L+   C       
Sbjct: 220 RGPRPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSYNILMKGHCLYGQAED 279

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              L   M      P   TY  ++N LC+  + +EA  +F+++ + G   +T+ +  +I 
Sbjct: 280 AFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEVNTITFNVLID 339

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE----EAKRLHKEMLDK 368
           G  K G + +A     EM   GL+P+  T+N +  G  +         + ++LH EM   
Sbjct: 340 GYAKAGQMENANMACAEMKAMGLMPDCCTFNILSAGAYKFGKAALFVLDQQQLH-EMF-- 396

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G   +T   + LI  LC  GR D+A+ L     +KG+   V  +N LI  Y KEG
Sbjct: 397 GSQLSTDGIDMLICRLCWDGRLDDAWELLCSAIEKGVQVSVSGFNALIAAYSKEG 451



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/219 (28%), Positives = 91/219 (41%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           + AF   G   E  ++L +V   G  P  +A   L+             ++   M AR  
Sbjct: 163 LHAFLAAGMADEALDVLARVRRAGDTPSLSALAALLRLLFRGGEVRAAWKVFEEMAARGP 222

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+   +  +I GLC       +  +   +     VPD   Y  ++ G C  G   DA  
Sbjct: 223 RPNLAIFNAMIFGLCHRGLVRVSGGLLGVMGRFHVVPDACSYNILMKGHCLYGQAEDAFN 282

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM   G  P   TYN +++  CR   + EA+ L  EML  G    T+T+N LI G  
Sbjct: 283 LFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAGVEVNTITFNVLIDGYA 342

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G+ + A     EM   G+  D  T+N L  G  K GK
Sbjct: 343 KAGQMENANMACAEMKAMGLMPDCCTFNILSAGAYKFGK 381



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 53/236 (22%), Positives = 92/236 (38%), Gaps = 36/236 (15%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++  C  G+  + + L  ++   G  P    +N L++  C +        L   M+   
Sbjct: 267 LMKGHCLYGQAEDAFNLFDEMRVTGCCPTIVTYNILMNELCREGRMVEARMLFDEMLQAG 326

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG----------- 313
              +  T+  +I+G  K+ +   A     ++K  G +PD   +  +  G           
Sbjct: 327 VEVNTITFNVLIDGYAKAGQMENANMACAEMKAMGLMPDCCTFNILSAGAYKFGKAALFV 386

Query: 314 ----------------------LCKMGW---LGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                 +C++ W   L DA ++    I KG+  +   +N++I  
Sbjct: 387 LDQQQLHEMFGSQLSTDGIDMLICRLCWDGRLDDAWELLCSAIEKGVQVSVSGFNALIAA 446

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           Y +    EEA  L+K M   G   ++ T N LI GLC  GR D+A    E M + G
Sbjct: 447 YSKEGFDEEAFELYKTMNKLGLAPSSSTLNYLIMGLCNRGRLDQARLFLEYMVRMG 502


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/340 (28%), Positives = 169/340 (49%), Gaps = 22/340 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G SPD      L  S  +A  F +A  ++D   FS     L +Y   +  L     ++EA
Sbjct: 167 GHSPDASVLGFLVSSATDAGKFNIARTWVDGVEFS-----LVVYNKLLNQLVRGNQVDEA 221

Query: 158 FCAFSKLKEMGVFGSIKT--WNSALLGCIKIDRTDLVWKLYH---------DLIESGYLI 206
            C F +  +MG+ G   +  +N  + G  +I + D  ++L++         D+I    LI
Sbjct: 222 VCFFRE--QMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNTLI 279

Query: 207 QAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
             FC   +V  G++LL+++L ++ L P+   +  +IS +C+     + S L + M++   
Sbjct: 280 NGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISSGI 339

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+ FT+  +ING  K    + A  ++ ++   G  PD + +T++I G C+ G +  + K
Sbjct: 340 KPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCPPDIITFTSLIDGHCRTGKVERSLK 399

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +W E+  + L PNEYT+  + +  C+ + L EA+   +++  +        YN +I G C
Sbjct: 400 LWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMYNPVIDGFC 459

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G  DEA  +  EM +K    D ITY  LI G+C +G++
Sbjct: 460 KAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRL 499



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/158 (31%), Positives = 86/158 (54%), Gaps = 1/158 (0%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y +++N L +  +  EA   F +        D+  +  +I GLC++G +  A +++ EM
Sbjct: 204 VYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELFNEM 263

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGR 389
              G  P+  TYN++I+G+CR++ ++    L KE+L K       VTY ++I+G C  G+
Sbjct: 264 RGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGK 323

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            ++A  LF  M   GI  +  T+N LI G+ K G +V+
Sbjct: 324 MEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVS 361



 Score = 47.8 bits (112), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 70/202 (34%), Gaps = 33/202 (16%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF-----LDSTGFSPNPNSLELYIQCLCESGLIE 155
           G  PD+++   L D     R  KV         L++   SPN  +  +    LC+   + 
Sbjct: 373 GCPPDIITFTSLIDG--HCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLH 430

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EA      LK   +      +N                           +I  FC  G V
Sbjct: 431 EARGFLRDLKWRHIVAQPFMYNP--------------------------VIDGFCKAGNV 464

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E   +L ++ E    P+   +  LI   C K        + + M+    APD+ T   +
Sbjct: 465 DEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSL 524

Query: 276 INGLCKSRKRLEAYRVFNDLKE 297
           I+ L K+    EAYR+     E
Sbjct: 525 ISCLLKAGMPNEAYRIMQIASE 546


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 167/370 (45%), Gaps = 47/370 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ ++ N + D  V+    +      D     G  PN  +  + +  LC +G ++E 
Sbjct: 225 GVAPNQITYNTMIDGHVKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDET 284

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF-------- 209
                ++    +     T++    G  +   +  +  L+ + ++ G +I A+        
Sbjct: 285 RALMDEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNG 344

Query: 210 -CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGKV++  ++L  ++  GLVP    +N LI+ +C+ ++      +   M +R+  PD
Sbjct: 345 LCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPD 404

Query: 269 NFTYEEVINGLCKSRKRLEA-----------------------------------YRVFN 293
           + TY  +INGLCK     EA                                   + V +
Sbjct: 405 HITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLS 464

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D++++G   + + + +V+   CK G + +A  +  +MIHK ++PN   YNS+I  Y    
Sbjct: 465 DMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESG 524

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             E+A  L ++M   G   +  TYN L+ GLC + + DEA  L   +  +G+  DV++YN
Sbjct: 525 GTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYN 584

Query: 414 TLIQGYCKEG 423
           T+I   C +G
Sbjct: 585 TIISACCNKG 594



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 157/336 (46%), Gaps = 14/336 (4%)

Query: 104 PDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L SCN+L +SL+        + A   L + G  P+  +    +Q    +G ++EA   
Sbjct: 121 PSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDEALAM 180

Query: 161 FSKL--KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             ++   E        ++N  + G  +  +     K++ ++++ G          +I   
Sbjct: 181 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTMIDGH 240

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G +  G+ L  Q+L+DG  P    +N L+S  C          L+  M + +  PD 
Sbjct: 241 VKGGDLEAGFRLRDQMLQDGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSMLPDG 300

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           FTY  + +GL ++        +F +  ++G +      + +++GLCK G +  A ++   
Sbjct: 301 FTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQVLEM 360

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++H GL+P    YN++I+GYC++ +L+ A  + ++M  +      +TYN LI GLC    
Sbjct: 361 LVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEM 420

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  L  EM + G+   V T+NTLI  Y + G++
Sbjct: 421 ITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQL 456



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 70/320 (21%), Positives = 142/320 (44%), Gaps = 14/320 (4%)

Query: 108 SCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +C++L + L +    A+A +V ++ L  TG  P        I   C+   ++ AF  F +
Sbjct: 337 TCSILLNGLCKDGKVAKAEQV-LEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQ 395

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           +K   +     T+N+ + G  K++       L  ++ +SG          LI A+   G+
Sbjct: 396 MKSRHIRPDHITYNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQ 455

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + + + +L  + + G+     +F  ++  FC+         +L  M+ ++  P+   Y  
Sbjct: 456 LEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNS 515

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+   +S    +A+ +   +K  G       Y  ++ GLCK   + +A ++ + + ++G
Sbjct: 516 IIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQG 575

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P+  +YN++I   C   + + A  L +EM       T  TY+ L++ L   GR  +  
Sbjct: 576 LRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDME 635

Query: 395 HLFEEMAQKGIFRDVITYNT 414
            L++ M  K +      Y T
Sbjct: 636 CLYQHMVHKNVEPSSSIYGT 655



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 129/318 (40%), Gaps = 53/318 (16%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H G  P     N L +   + R  + A      + S    P+  +    I  LC+  +I 
Sbjct: 363 HTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMIT 422

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLI 206
           EA     ++++ GV  S++T+N+ +    +  + +  + +  D+         I  G ++
Sbjct: 423 EAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVV 482

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +AFC +GK+ E   +L  ++   +VP    +N +I  + E     +   L+  M +   +
Sbjct: 483 KAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGVS 542

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG-------- 318
              FTY  ++ GLCK+ +  EA  +  +L  +G  PD V Y T+I   C  G        
Sbjct: 543 ASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALEL 602

Query: 319 ---------------------WLGDARK------MWFEMIHKGLLPNEYTYNSMIHGYCR 351
                                 LG A +      ++  M+HK + P+   Y +      R
Sbjct: 603 LQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGT------R 656

Query: 352 IDNLEEAKRLHKEMLDKG 369
            +N  +   L KEM +KG
Sbjct: 657 CENESKVASLKKEMSEKG 674



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 2/130 (1%)

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           R  +P       ++  L  +G   D R  +  ++  G  P+ + +N  +       +L+E
Sbjct: 117 RSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDLDE 176

Query: 358 AKRLHKEM--LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           A  + + M   +        +YN +IAGL   G+  +A  +F+EM  +G+  + ITYNT+
Sbjct: 177 ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYNTM 236

Query: 416 IQGYCKEGKI 425
           I G+ K G +
Sbjct: 237 IDGHVKGGDL 246


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 163/337 (48%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+   + + + +    K A++ L   + T   P+       I  LC+ G   +A
Sbjct: 40  GLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDA 99

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              FS++ E G+  ++ T+N  + G     R     +L  D+IE            LI A
Sbjct: 100 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISA 159

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK+ E  +L  ++L   + P+   +N +I  FC+   F     +   M +    PD
Sbjct: 160 SVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS----PD 215

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T+  +I+  C++++  E  ++  ++  RG V +T  Y T+IHG C++  L  A+ ++ 
Sbjct: 216 VVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQ 275

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G+ P+  T N +++G+C  + LEEA  L + +        TV YN +I G+C   
Sbjct: 276 EMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGS 335

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA+ LF  +   G+  DV TYN +I G+C +  I
Sbjct: 336 KVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAI 372



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/200 (34%), Positives = 112/200 (56%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++E GL P    FN LI+  C +      + L++ MV +    D  TY  ++NG+CK   
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A  + + ++E    PD V+Y+ +I  LCK G   DA+ ++ EM+ KG+ PN +TYN 
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNC 120

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           MI G+C      +A+RL ++M+++      +T+N LI+     G+  EA  L +EM  + 
Sbjct: 121 MIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRC 180

Query: 405 IFRDVITYNTLIQGYCKEGK 424
           IF D +TYN++I G+CK  +
Sbjct: 181 IFPDTVTYNSMIYGFCKHNR 200



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 151/330 (45%), Gaps = 13/330 (3%)

Query: 94  QWLHSHY---GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQ 146
           Q+L S     G +P++ + N + D        + A ++  D ++    +P+  +    I 
Sbjct: 100 QYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIERE-INPDVLTFNALIS 158

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIE 201
              + G + EA     ++    +F    T+NS + G  K +R D    ++      D++ 
Sbjct: 159 ASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMASPDVVT 218

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +I  +C   +V EG +LLR++   GLV   T +N LI  FCE  N     +L   M+
Sbjct: 219 FNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMI 278

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +    PD  T   ++ G C++ K  EA  +F  ++      DTV Y  +IHG+CK   + 
Sbjct: 279 SHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDTVAYNIIIHGMCKGSKVD 338

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  ++  +   G+ P+  TYN MI G+C    + +A  L  +M D G+     TYNTLI
Sbjct: 339 EAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLI 398

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            G    G  D++  L  EM   G   D  T
Sbjct: 399 RGCLKAGEIDKSIELISEMRSNGFSGDAFT 428



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 118/221 (53%), Gaps = 4/221 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C +G+V E   L+ +++  GL  +   +  +++  C+  +      LL  M   +
Sbjct: 16  LINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH 75

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD   Y  +I+ LCK     +A  +F+++ E+G  P+   Y  +I G C  G   DA+
Sbjct: 76  IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQ 135

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +MI + + P+  T+N++I    +   L EA++L  EML +     TVTYN++I G 
Sbjct: 136 RLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGF 195

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C H R D+A H+F+ MA      DV+T+NT+I  YC+  ++
Sbjct: 196 CKHNRFDDAKHMFDLMASP----DVVTFNTIIDVYCRAKRV 232



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 43/205 (20%), Positives = 84/205 (40%), Gaps = 30/205 (14%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP---NP 138
           + +N+  +   FQ + SH G  PD ++CN+L     E    + A++  +    S    + 
Sbjct: 263 EVDNLNAAQDLFQEMISH-GVCPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDLDT 321

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  +C+   ++EA+  F  L   GV   ++T+N                     
Sbjct: 322 VAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYN--------------------- 360

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I  FC    +S+   L  ++ ++G  P+N+ +N LI    +     +  EL+ 
Sbjct: 361 -----VMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELIS 415

Query: 259 TMVARNRAPDNFTYEEVINGLCKSR 283
            M +   + D FT + V + +   R
Sbjct: 416 EMRSNGFSGDAFTIKMVADLITDGR 440


>gi|359476104|ref|XP_003631789.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Vitis vinifera]
          Length = 877

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 179/390 (45%), Gaps = 15/390 (3%)

Query: 50  ITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSC 109
           I +    + Q  L+ IP   FN     R +LK       S  F + +        ++ + 
Sbjct: 416 IEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA---NIFTY 472

Query: 110 NVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N++   L +      A   LD+    G  PN  S    I   C  G ++ A   FS +  
Sbjct: 473 NIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLA 532

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
             +  ++ T++  + G  K   ++    L+  ++             +I   C  G++SE
Sbjct: 533 RDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSE 592

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             + L+  LE+G +P    +N ++  F ++ N      +   M     +P+  TY  +IN
Sbjct: 593 ARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLIN 652

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CKS +   A +  ++++E+G   D   Y+ +I G CK   +  A+ ++FE++  GL P
Sbjct: 653 GFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSP 712

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N   YNSMI G+  ++N+E A   +K+M++        TY TLI GL   GR   A  L+
Sbjct: 713 NRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLY 772

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            EM  KGI  D+IT++ L+ G C +G++ N
Sbjct: 773 MEMLSKGIVPDIITFHVLVNGLCNKGQLEN 802



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 159/330 (48%), Gaps = 14/330 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
             P++V+ ++L D   +    + A+D  D   S   +P   +    I  LC+ G + EA 
Sbjct: 535 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEAR 594

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
                  E G   S  T+NS + G IK    D    +Y ++ E G          LI  F
Sbjct: 595 DKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGF 654

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C   ++    +   ++ E GL  + TA++ LI  FC++++     +L   ++    +P+ 
Sbjct: 655 CKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNR 714

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWF 328
             Y  +I+G  +    +EA  V+        +P D   YTT+I GL K G L  A  ++ 
Sbjct: 715 IVYNSMISGF-RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYM 773

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG++P+  T++ +++G C    LE A+++ +EM  K    + + YNTLIAG    G
Sbjct: 774 EMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREG 833

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
              EA+ L +EM  +G+  D +TY+ LI G
Sbjct: 834 NLKEAFTLHDEMLDRGLVPDDVTYDILING 863



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 43/315 (13%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------Y 204
           IE A   F+ +    V   +   N  L   ++ +    +  LY+ ++  G          
Sbjct: 206 IENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHV 265

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++A   +G+V E  E  R+  E G+  +  A++ +I   C+K N     ELL  M  R 
Sbjct: 266 MVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERG 325

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   T+  VI         +EA R+  ++   G   + V+ T+++ G C  G L  A 
Sbjct: 326 WVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSAL 385

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--------------LDKGY 370
            ++ ++   GL PN+ TY+ +I G C   N+E+A  L+ +M              L +GY
Sbjct: 386 NLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGY 445

Query: 371 GETTV--------------------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            +  +                    TYN +++ LC  G+ DEA  L + M  +G+  +V+
Sbjct: 446 LKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVV 505

Query: 411 TYNTLIQGYCKEGKI 425
           +YN +I G+C++G +
Sbjct: 506 SYNDMILGHCRKGNM 520



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 12/198 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+ + + L D   + R  + A D    L   G SPN       I    +   +E A
Sbjct: 674 GLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAA 733

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              + K+    +   + T+ + + G +K  R      LY +++  G          L+  
Sbjct: 734 LVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNG 793

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G++    ++L ++    + P    +N LI+ +  + N      L   M+ R   PD
Sbjct: 794 LCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPD 853

Query: 269 NFTYEEVINGLCKSRKRL 286
           + TY+ +ING  K  + L
Sbjct: 854 DVTYDILINGKFKGDRSL 871


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 165/347 (47%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           + LH H      G   D VS   L + + +    + A+     +D     PN       I
Sbjct: 147 KALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTII 206

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES-- 202
             LC+  L+ EA+  FS++   G+   + T+ + + G CI     + +  L   ++++  
Sbjct: 207 DALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTIN 266

Query: 203 ------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+ A C +GKV E   +L  +L+  + P+   ++ L+  +       +   +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHV 326

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M      PD  +Y  +ING CK++   EA  +F ++ ++  VP  V Y+++I GLCK
Sbjct: 327 FNAMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +     +  EM  +G+  N  TYNS+I G C+  +L+ A  L  +M D+G    + T
Sbjct: 387 SGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFT 446

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  L+ GLC  GR  +A   F+++  KG   DV  YN +I G+CK+G
Sbjct: 447 FTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQG 493



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL++ N+L +              L      G+ P+  +    I+ LC  G + +A
Sbjct: 89  GIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKA 148

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYHDLIESGY-----LIQA 208
                KL   G+     ++ + + G  KI  T     LV K+   L +        +I A
Sbjct: 149 LHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDA 208

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    VSE Y L  ++   G+  +   +  LI  FC          LL+ MV +   P+
Sbjct: 209 LCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPN 268

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++ LCK  K  EA  V   + +    PD + Y+T++ G   +  L  A+ ++ 
Sbjct: 269 VYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFN 328

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G+ P+ ++Y  +I+G+C+   ++EA  L KEM  K      VTY++LI GLC  G
Sbjct: 329 AMSLMGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSG 388

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R    + L +EM  +GI  +VITYN+LI G CK G +
Sbjct: 389 RISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHL 425



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 136/278 (48%), Gaps = 15/278 (5%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +++A   F+++  M     I  +N  L    KI        L H         DLI    
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH---TMV 261
           LI  FC+ G+++ G+ +L ++L+ G  P    F  LI   C K   G+V++ LH    ++
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLK---GQVNKALHFHDKLL 156

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A+    D  +Y  +ING+CK      A ++   +  R   P+  MY T+I  LCK   + 
Sbjct: 157 AQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVS 216

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  ++ EM  KG+  +  TY ++I+G+C    L+EA  L  EM+ K       TYN L+
Sbjct: 217 EAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             LC  G+  EA ++   M +  +  DVITY+TL+ GY
Sbjct: 277 DALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGY 314



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 175/394 (44%), Gaps = 29/394 (7%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFF 93
           K  Q  Y  +   VCKI  T  R    L+  I      D    +  ++  N ++ ++  +
Sbjct: 161 KFDQVSYGTLINGVCKIGDT--RGAIKLVRKI------DGRLTKPNVEMYNTIIDALCKY 212

Query: 94  QWLHSHYGF---------SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSL 141
           Q +   YG          S D+V+   L      A   K A+  L+       +PN  + 
Sbjct: 213 QLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTY 272

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + +  LC+ G ++EA    + + +  V   + T+++ + G   +        +++ +  
Sbjct: 273 NILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSL 332

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          LI  FC +  V E   L +++ +  +VP    ++ LI   C+      
Sbjct: 333 MGVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISY 392

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           V +L+  M  R    +  TY  +I+GLCK+     A  +FN +K++G  P +  +T ++ 
Sbjct: 393 VWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTFTILLD 452

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GLCK G L DA++ + +++ KG   + Y YN MI+G+C+   LEEA  +  +M + G   
Sbjct: 453 GLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVP 512

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
             VT++ +I  L      D+A  L  +M  +G+ 
Sbjct: 513 NAVTFDIIINALFKKDENDKAEKLLRQMICRGLL 546



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 62/194 (31%), Positives = 101/194 (52%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FNK++  F + K++     L H +  +   PD  T   +IN  C   +    + V
Sbjct: 57  PPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + +RGY P T+ +TT+I GLC  G +  A     +++ +G+  ++ +Y ++I+G C+
Sbjct: 117 LAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCK 176

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           I +   A +L +++  +        YNT+I  LC +    EAY LF EM  KGI  DV+T
Sbjct: 177 IGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVT 236

Query: 412 YNTLIQGYCKEGKI 425
           Y TLI G+C   K+
Sbjct: 237 YTTLIYGFCIASKL 250



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 107/227 (47%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +I+   ++ +F      S    L  ++   G+ P+    N LI+ FC          +L 
Sbjct: 59  IIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLA 118

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            ++ R   P   T+  +I GLC   +  +A    + L  +G   D V Y T+I+G+CK+G
Sbjct: 119 KILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIG 178

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A K+  ++  +   PN   YN++I   C+   + EA  L  EM  KG     VTY 
Sbjct: 179 DTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYT 238

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G C+  +  EA  L  EM  K I  +V TYN L+   CKEGK+
Sbjct: 239 TLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKV 285



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 71/137 (51%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN +    + P  + +  ++    K+     A  +   +  KG+ P+  T N +I
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C +  +     +  ++L +GY   T+T+ TLI GLCL G+ ++A H  +++  +GI 
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIK 161

Query: 407 RDVITYNTLIQGYCKEG 423
            D ++Y TLI G CK G
Sbjct: 162 FDQVSYGTLINGVCKIG 178



 Score = 43.1 bits (100), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 47/104 (45%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA   +  M+     P    +N ++  + +I +   A  L   +  KG     +T N LI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C  G+    + +  ++ ++G     IT+ TLI+G C +G++
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQV 145


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM+ KG      
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F +       P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   +  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +   L  ++L+ GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD   YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|298204410|emb|CBI16890.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 33/342 (9%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELY 144
           +I+ F+ +  H GF P L +C VL +SL +AR     +KV    +   G  PN +   + 
Sbjct: 171 AIQVFEHMRVH-GFKPHLHACTVLLNSLAKARLTNMVWKVYKKMV-RVGVVPNIHIFNVL 228

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C+SG +E+A    ++++   +F  + T+N+                          
Sbjct: 229 IHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNT-------------------------- 262

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN-FGRVSELLHTMVAR 263
           LI  +C  G   E   +  ++   G+ P+   +N LI  FC + N       L   M   
Sbjct: 263 LISLYCKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVE 322

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P   TY  ++  LC+  K  +A R+ N++ ER   PD V   T+I+  CK+G +G A
Sbjct: 323 GLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDMGSA 382

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K+  +M+  GL P+++T+ ++IHG+C++  ++ AK    EMLD G+  +  TY+ L+  
Sbjct: 383 MKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYSWLVDS 442

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                  +    L +E+++KG+F D+  Y  LI+  CK  KI
Sbjct: 443 YYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKI 484



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 175/412 (42%), Gaps = 51/412 (12%)

Query: 17  RNFQN-PNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLF 75
           +NFQ   +T + +L  +  E+Q     +AK VC I   K  W   L  ++ S N    + 
Sbjct: 16  KNFQAFTSTAMASLVFQCGETQ-----LAKIVCGIV-VKGHWNSLLKPNVGS-NLTSTIL 68

Query: 76  FREFLKQQ-NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF 134
            +  L    +   +S  FF+W+ S+      L S   +  +L + + FK A + L+    
Sbjct: 69  NQVLLNLSLDGCCVSWAFFKWVESNLNHKHSLQSSWTMIHTLAKHKQFKTAQNLLERIA- 127

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
                              + +   + S L  +         NS +L             
Sbjct: 128 -------------------VRDYLSSPSVLNAVVRIHDDPDSNSQILS------------ 156

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                    +L+  + N     +  ++   +   G  P   A   L++   + +    V 
Sbjct: 157 ---------WLVIFYANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVW 207

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           ++   MV     P+   +  +I+  CKS    +A ++ N+++ R   PD   Y T+I   
Sbjct: 208 KVYKKMVRVGVVPNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLY 267

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR-IDNLEEAKRLHKEMLDKGYGET 373
           CK G   +A  +   M   G+ P+  TYNS+I+G+CR +++LEEA RL + M  +G    
Sbjct: 268 CKKGMHYEALGIQDRMERGGVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEVEGLHPG 327

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            VTYN+++  LC  G+  +A  L  EM+++ +  D +T NTLI  YCK G +
Sbjct: 328 VVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCNTLINAYCKIGDM 379



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 62/272 (22%), Positives = 109/272 (40%), Gaps = 36/272 (13%)

Query: 101 GFSPDLVSCNVLF-------DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           G SPD+V+ N L        + L EA   +  M+     G  P   +    ++ LCE G 
Sbjct: 287 GVSPDIVTYNSLIYGFCREVNDLEEALRLREVMEV---EGLHPGVVTYNSILRKLCEEGK 343

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           I++A    +++ E                           K+  D +    LI A+C  G
Sbjct: 344 IKDANRLLNEMSER--------------------------KVEPDNVTCNTLINAYCKIG 377

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
            +    ++ +++LE GL P+   F  LI  FC+        E L  M+    +P   TY 
Sbjct: 378 DMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDAGFSPSYSTYS 437

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +++       +    R+ ++L  +G   D  +Y  +I  LCK+  +  A +++  M  K
Sbjct: 438 WLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLCKIDKIESAERIFTLMQGK 497

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           G+  +   Y S+ + Y +      A  +  EM
Sbjct: 498 GMKGDSVVYTSLAYAYFKAGKAIAASDMLDEM 529


>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 884

 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 165/338 (48%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVL----FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +PD  + N+L    +    EA ++++  D+  S+   P+ +  ++ +  LC +G ++E
Sbjct: 413 GIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSS-LVPDCSLYDVSVAGLCWAGQLDE 471

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A      + E G+  S+  +NS +    +    D   K Y  ++  G          ++ 
Sbjct: 472 AMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLL 531

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G++ E  +LL ++++ GL     AF  L+  + +  +      L + M AR   P
Sbjct: 532 GLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICP 591

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   +   I+GL K+    EAY  F+++ ++G+VP+  +Y ++IHGLC  G L +A K+ 
Sbjct: 592 DAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLE 651

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  KGLLP+ +T N +I+G+C+   ++ A     EM   G    TVTYNTLI G C  
Sbjct: 652 REMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKV 711

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                A     +M   G   D+ TYN  IQG+C   KI
Sbjct: 712 LDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKI 749



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 145/331 (43%), Gaps = 12/331 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD    +V    L  A     AM FL+     G  P+  +    I     +G  + A  A
Sbjct: 451 PDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKA 510

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
           +  +   G+  S  T +S LLG  K  R      L + +I+ G          L+  +  
Sbjct: 511 YKIMLMFGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFK 570

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G  +  + L  ++   G+ P+  AF+  I    +        E    M  +   P+NF 
Sbjct: 571 VGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFV 630

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLC   K  EA ++  +++++G +PD      +I+G CK G +  A   + EM 
Sbjct: 631 YNSLIHGLCNCGKLHEALKLEREMRQKGLLPDIFTTNIIINGFCKEGRMKSAFDAFAEMH 690

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           H G+ P+  TYN++I GYC++ ++  A     +M   G+     TYN  I G C   +  
Sbjct: 691 HIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFCSSQKIS 750

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            A  + +E+   G+  + +TYNT++   C +
Sbjct: 751 RAVTMLDELIAVGVVPNTVTYNTMMNAVCTD 781



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 147/339 (43%), Gaps = 21/339 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEA-------RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           G  P +V+ N +  +   A       +A+K+ + F    G  P+ ++    +  L + G 
Sbjct: 483 GMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMF----GLVPSSSTCSSMLLGLSKKGR 538

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           ++EA     K+ + G+  +   +   L G  K+  T     L++         D I    
Sbjct: 539 LQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVGDTAGAHSLWYEMEARGICPDAIAFSA 598

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I      G V E YE   ++ + G VP N  +N LI   C         +L   M  + 
Sbjct: 599 FIDGLSKAGLVEEAYEAFSEMSKKGFVPNNFVYNSLIHGLCNCGKLHEALKLEREMRQKG 658

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD FT   +ING CK  +   A+  F ++   G  PDTV Y T+I G CK+  +  A 
Sbjct: 659 LLPDIFTTNIIINGFCKEGRMKSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSAD 718

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +   +M   G  P+  TYN  I G+C    +  A  +  E++  G    TVTYNT++  +
Sbjct: 719 EFLNKMYASGWDPDITTYNIRIQGFCSSQKISRAVTMLDELIAVGVVPNTVTYNTMMNAV 778

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           C     D A  L  ++ +     +V+T N L+  +CK+G
Sbjct: 779 CTD-MLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQG 816



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 152/336 (45%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P   + ++LF  L+    +      L      G  P  ++  + I C C+ G +  A
Sbjct: 238 GVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVA 297

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI-DRTDLVWKLYHDLIESG---------YLIQ 207
                 + +      +  +N  L+   +I  RT       H +I++G          +I 
Sbjct: 298 ESLLFVMPKFCCEPDVYAYN-ILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIIT 356

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AFCN+G V E  ++   + E GL P    +N L+S + + ++  + + L   M  +  AP
Sbjct: 357 AFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAP 416

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  ++ G  K  K  ++Y +F D      VPD  +Y   + GLC  G L +A +  
Sbjct: 417 DGATFNILVAGNYKYGKEADSYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQLDEAMQFL 476

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M+ KG+ P+   +NS+I  Y R    + A + +K ML  G   ++ T ++++ GL   
Sbjct: 477 EDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKAYKIMLMFGLVPSSSTCSSMLLGLSKK 536

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           GR  EA  L  +M  KG+  + + +  L+ GY K G
Sbjct: 537 GRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYFKVG 572



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/213 (28%), Positives = 105/213 (49%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G     ++LLR ++ DG  P N  FN +I  FC+K        LL  M      PD + Y
Sbjct: 257 GDYGSVWKLLRGMIRDGPRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAY 316

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +IN      +  +A    + + + G  P  + ++T+I   C  G + +ARK++  +  
Sbjct: 317 NILINAYRIRGRTSDALGFLHLMIKNGCKPSLITFSTIITAFCNEGNVVEARKIFEGIQE 376

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            GL PN   YN+++ GY +  ++ +A  L++EM DKG      T+N L+AG   +G+  +
Sbjct: 377 VGLSPNVAMYNTLMSGYFKARDVCQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEAD 436

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +Y LF + +   +  D   Y+  + G C  G++
Sbjct: 437 SYELFRDWSLSSLVPDCSLYDVSVAGLCWAGQL 469



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 67/152 (44%)

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           ++ G   S    E+  + + ++E G  P +   + +   L ++G  G   K+   MI  G
Sbjct: 214 LMRGFMNSEMAYESLEILSRMREVGVRPSSSAISILFRLLLRVGDYGSVWKLLRGMIRDG 273

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             P  + +N MI  +C+   L  A+ L   M           YN LI    + GRT +A 
Sbjct: 274 PRPCNHNFNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDAL 333

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                M + G    +IT++T+I  +C EG +V
Sbjct: 334 GFLHLMIKNGCKPSLITFSTIITAFCNEGNVV 365



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/158 (23%), Positives = 63/158 (39%), Gaps = 31/158 (19%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLC 149
           F  +H H G +PD V+ N L     +      A +FL+   ++G+ P+  +  + IQ  C
Sbjct: 686 FAEMH-HIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIRIQGFC 744

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
            S  I  A     +L  +GV  +  T+N+                          ++ A 
Sbjct: 745 SSQKISRAVTMLDELIAVGVVPNTVTYNT--------------------------MMNAV 778

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
           C D  +     L  ++L+   VP     N L+S FC++
Sbjct: 779 CTD-MLDRAMVLTAKLLKMAFVPNVVTTNVLLSHFCKQ 815


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 165/335 (49%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P+L + N+L D L +A   + A+   D +   G  PN  ++ + I  LC++  ++EA  
Sbjct: 409 APNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACS 468

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F  L         +T+ S + G  +  R D  + LY  +++S           LIQ F 
Sbjct: 469 IFLGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFF 528

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+  +G+++ ++++  G  P+    N  +    +     +   L   + A+   PD  
Sbjct: 529 KCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVR 588

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +Y  +I+GL K+    E Y++F ++KE+G   D + Y TVI G CK G +  A ++  EM
Sbjct: 589 SYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEM 648

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KGL P   TY S++ G  +ID L+EA  L +E    G     V Y++LI G    GR 
Sbjct: 649 KTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRI 708

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           DEAY + EE+ QKG+  +  T+N L+    K  +I
Sbjct: 709 DEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEI 743



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 151/294 (51%), Gaps = 26/294 (8%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G SP+   L  Y+ C+ ++G +E+    F ++K  G+   +++++               
Sbjct: 547 GCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSI-------------- 592

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             L H L+++G+            E Y+L  ++ E GL  +  A+N +I  FC+     +
Sbjct: 593 --LIHGLVKAGF----------SRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDK 640

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M  +   P   TY  V++GL K  +  EAY +F + K  G   + V+Y+++I 
Sbjct: 641 AYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLID 700

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G  K+G + +A  +  E++ KGL PN YT+N ++    + + ++EA+   + M +     
Sbjct: 701 GFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSP 760

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +TY+ +I GLC+  + ++A+  ++EM ++G+  + ITY T+I G  K G ++
Sbjct: 761 NAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVM 814



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 162/373 (43%), Gaps = 23/373 (6%)

Query: 70  FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL 129
            + P      +K+  +V ++ ++F+W+            C  ++++ +   A    +D+L
Sbjct: 97  MSQPEVIVGVMKRLKDVNVAFQYFRWVER----KTQQAHCPEVYNAFLMVMARTRNLDYL 152

Query: 130 DS-------TGFS-PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           +         GF   N  S+EL +    +S  ++EAF     +++     +   + + + 
Sbjct: 153 EQILEEMSVAGFGLSNHVSVEL-VASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIG 211

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
                +R D +  L+H + E GY         L++ F  +G++     LL ++  +    
Sbjct: 212 ALSAANRPDPMLTLFHQMQEIGYEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTA 271

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +   +N  I  F +        +  H M A+   PD+ TY  +I  LCK+R+  EA  +F
Sbjct: 272 DLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELF 331

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            +L     VP    Y T+I G    G   +A  +      KG +P+   YN ++    R 
Sbjct: 332 EELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRK 391

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +EEA R+H EM        T TYN LI  LC  G  + A  + + M + G+F +++T 
Sbjct: 392 GKVEEALRIHDEMRQDAAPNLT-TYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTV 450

Query: 413 NTLIQGYCKEGKI 425
           N +I   CK  K+
Sbjct: 451 NIMIDRLCKAQKL 463



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 146/321 (45%), Gaps = 18/321 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           H G SPDL+  N   D + +A      +   + + + G  P+  S  + I  L ++G   
Sbjct: 545 HRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSR 604

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLI 206
           E +  F ++KE G+   +  +N+ + G  K  + D  ++L  ++         +  G ++
Sbjct: 605 ETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVV 664

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVAR 263
                  ++ E Y L  +    G+      ++ LI  F      GR+ E   +L  ++ +
Sbjct: 665 DGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGF---GKVGRIDEAYLILEELMQK 721

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+++T+  +++ L K+ +  EA   F ++K     P+ + Y+ +I+GLC +     A
Sbjct: 722 GLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKA 781

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              W EM  +GL PN  TY +MI G  +  N+ EA+ L       G    +  YN +I G
Sbjct: 782 FVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGGVPDSACYNAMIEG 841

Query: 384 LCLHGRTDEAYHLFEEMAQKG 404
           L    +  +AY +FEE   KG
Sbjct: 842 LSSANKAMDAYIVFEETRLKG 862



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 156/332 (46%), Gaps = 21/332 (6%)

Query: 112 LFDSLVEARA----FKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           LF +LV   A       A+  LD    +     L LY   I C  + G ++ A+  F ++
Sbjct: 240 LFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEM 299

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-----IESGY----LIQAFCNDGKV 215
           K  G+     T+ + +    K  R D   +L+ +L     +   Y    +I  + + GK 
Sbjct: 300 KAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKF 359

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL--HTMVARNRAPDNFTYE 273
            E Y LL +    G +P   A+N +++    K   G+V E L  H  + ++ AP+  TY 
Sbjct: 360 DEAYSLLERQKRKGCIPSVIAYNCILTCLGRK---GKVEEALRIHDEMRQDAAPNLTTYN 416

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I+ LCK+ +   A +V + +KE G  P+ +    +I  LCK   L +A  ++  + HK
Sbjct: 417 ILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHK 476

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
              P+  T+ S+I G  R   +++A  L+++MLD       V Y +LI      GR ++ 
Sbjct: 477 VCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDG 536

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +++EM  +G   D++  N+ +    K G++
Sbjct: 537 HKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEV 568


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 166/354 (46%), Gaps = 36/354 (10%)

Query: 103 SPDLVSCNVLFDSLVEAR-AFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           +P +V  N +   L++ +  +   +     ++S G  P+  +L + I C C  G +  AF
Sbjct: 63  TPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILINCYCHLGQMTFAF 122

Query: 159 CAFSKLKEMGVFGSIKTWNSALL----------------------GCIKIDRTDLVWKLY 196
             F+K+ +MG+  + K  N ALL                      G  K+ +T    ++ 
Sbjct: 123 SVFAKILKMGLCLNGKV-NEALLFHDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVL 181

Query: 197 H---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
                     +++    +I   C D  V++ Y L  +++   + P    F+ LI  FC  
Sbjct: 182 RQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIV 241

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
             F     L + MV +N  PD +T+  +++ LCK  K  EA  V   + + G  P  V Y
Sbjct: 242 GKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTY 301

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            T++ G C +  +G A+ +   +    + PN  +YN MI+G+C+I  ++EA  L  EM  
Sbjct: 302 NTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCC 361

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +G     VTYN+LI GLC  GR   A+ L +EM    I  D++TYN+LI  +CK
Sbjct: 362 RGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCK 415



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 173/343 (50%), Gaps = 17/343 (4%)

Query: 97  HSHY---GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSL--ELYIQCLCE 150
           H H    GF  + V+  +L + L +    + A+  L    G   N N +     I  LC+
Sbjct: 146 HDHVLALGFHLNHVTYGILINGLCKMGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCK 205

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
             L+ +A+  +S++    +  ++ T++S + G   + +    ++L+++++          
Sbjct: 206 DKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYT 265

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L+ A C +GK+ E   ++  ++++G+ P    +N L+  +C     G+   +L  + 
Sbjct: 266 FNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIIS 325

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
               AP++ +Y  +ING CK +   EA  +F+++  RG  P  V Y ++I GLCK G + 
Sbjct: 326 RMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIP 385

Query: 322 DARKMWFEMIHKGLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            A ++  EM H   +P +  TYNS+I  +C+  ++++A  L K++ + G      TYN L
Sbjct: 386 YAWELVDEM-HNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCTYNIL 444

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           I GLC  G+   A  +F+++  KG   +  TYN +I G CKEG
Sbjct: 445 IDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEG 487



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 12/248 (4%)

Query: 101 GFSPDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L D    + E    K  +  +     +PN  S  + I   C+  +++EA
Sbjct: 293 GVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEA 352

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
            C F ++   G+     T+NS + G  K  R    W+L           D++    LI  
Sbjct: 353 LCLFHEMCCRGIAPHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDV 412

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +  V +   L++++ E G+ P    +N LI   C+        ++   ++ +    +
Sbjct: 413 FCKNQHVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVN 472

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +INGLCK     EA  + + +++ G +PD V Y T+I  L        A+K+  
Sbjct: 473 AWTYNIMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLR 532

Query: 329 EMIHKGLL 336
           EM+ KG++
Sbjct: 533 EMVIKGVV 540



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 111/229 (48%), Gaps = 25/229 (10%)

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKN-FGRVSELLHTMVARNRAPDNFTYEEVIN 277
           +  +RQ+ +    P    FNK+++   + KN +  V  L   M ++   PD FT   +IN
Sbjct: 54  FNRMRQIRQ---TPSIVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLSILIN 110

Query: 278 ---------------------GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
                                GLC + K  EA    + +   G+  + V Y  +I+GLCK
Sbjct: 111 CYCHLGQMTFAFSVFAKILKMGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILINGLCK 170

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           MG    A ++  ++  K +  N   Y+++I G C+   + +A  L+ EM+ K    T VT
Sbjct: 171 MGQTRAALQVLRQIEGKLVNTNVVMYSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVT 230

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +++LI G C+ G+  +A+ LF EM  K I  D  T+N L+   CKEGKI
Sbjct: 231 FSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTFNILVDALCKEGKI 279



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 16/180 (8%)

Query: 40  YTEIAKQVCKITRTKPRWE-------QTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           Y  +   +CK  R    WE         + +DI ++N         F K Q+ V  +I  
Sbjct: 371 YNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNS----LIDVFCKNQH-VDKAIAL 425

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLC 149
            + +  H G  P++ + N+L D L +    K A D        G++ N  +  + I  LC
Sbjct: 426 VKKIKEH-GIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLC 484

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           + GL +EA    SK+++ G+     T+ + +      D  +   KL  +++  G ++ AF
Sbjct: 485 KEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREMVIKGVVVYAF 544


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/315 (29%), Positives = 154/315 (48%), Gaps = 11/315 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           A  + MD + + G SP+  ++   ++   ESGLI+ A   F ++   GV     ++   +
Sbjct: 189 AVGMVMD-MQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKLMV 247

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
           +GC +  +     +    +I+ G+         ++ A C +G V+      R++++ G  
Sbjct: 248 IGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDLGFK 307

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F  LI   C+K +  +  E+L  MV     P+ +T+  +I+GLCK     +A+R+
Sbjct: 308 PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRL 367

Query: 292 FNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           F  L +   Y P+   YT++I G CK   L  A  ++  M  +GL PN  TY ++I+G+C
Sbjct: 368 FLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC 427

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +  N + A  L   M D+G+     TYN +I  LC   R  EAY L  +    G+  D +
Sbjct: 428 KAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGV 487

Query: 411 TYNTLIQGYCKEGKI 425
           TY  LIQ  CK+  I
Sbjct: 488 TYTILIQEQCKQSDI 502



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 157/348 (45%), Gaps = 17/348 (4%)

Query: 94  QWLHS--HYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           +WL      GF PD  +C ++  +L E     RA       +D  GF PN  +    I  
Sbjct: 261 RWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMID-LGFKPNLINFTSLIDG 319

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC+ G I++AF    ++   G   ++ T  + + G  K   T+  ++L+  L+ S     
Sbjct: 320 LCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKP 379

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  +I  +C + K++    L  ++ E GL P    +  LI+  C+  NF R  EL+
Sbjct: 380 NVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELM 439

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M      P+ +TY  VI+ LCK  +  EAY + N     G   D V YT +I   CK 
Sbjct: 440 NLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQ 499

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A   +  M   G   +    N +I  +CR   ++E++RL + ++  G   T  TY
Sbjct: 500 SDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETY 559

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++I+G C  G  D A   F  M + G   D  TY +LI G CK+  +
Sbjct: 560 TSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 607



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 152/334 (45%), Gaps = 13/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+L++   L D L +  + K A + L+     G+ PN  +    I  LC+ G  E+A
Sbjct: 305 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 364

Query: 158 FCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           F  F KL    ++  ++ T+ S + G  K D+ +    L+  + E G          LI 
Sbjct: 365 FRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 424

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G     YEL+  + ++G  P    +N +I   C+K       ELL+   +     
Sbjct: 425 GHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAFSCGLEA 484

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I   CK     +A   F  + + G+  D  +   +I   C+   + ++ +++
Sbjct: 485 DGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLF 544

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             ++  GL+P + TY SMI GYC+  + + A +    M   G    + TY +LI+GLC  
Sbjct: 545 QLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKK 604

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              DEA  L+E M  +G+    +T  TL   YCK
Sbjct: 605 SMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 638



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 154/338 (45%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P++ +   L D L +     +AF++ +  + S  + PN ++    I   C+   +  
Sbjct: 340 GWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNR 399

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   FS++KE G+F ++ T+ + + G  K    D  ++L + + + G+         +I 
Sbjct: 400 AEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVID 459

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C   +  E YELL +    GL  +   +  LI   C++ +  +       M       
Sbjct: 460 SLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEA 519

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D      +I   C+ +K  E+ R+F  +   G VP    YT++I G CK G    A K +
Sbjct: 520 DMRLNNILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYF 579

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G +P+ +TY S+I G C+   ++EA +L++ M+D+G     VT  TL    C  
Sbjct: 580 HNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKR 639

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  A  + E + +K   R   T  TL++  C E K+
Sbjct: 640 NDSASAMIVLEPLDKKLWIR---TVRTLVRKLCSEKKV 674



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 118/224 (52%), Gaps = 5/224 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++ F   G+++E   ++  +   GL P +   N ++    E         +   M  R 
Sbjct: 176 MLRNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRG 235

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+ +++ ++ G  +  K  EA R  + + +RG++PD    T ++  LC+ G +   R
Sbjct: 236 VCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVN--R 293

Query: 325 KMWF--EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
            +W+  +MI  G  PN   + S+I G C+  ++++A  + +EM+  G+     T+  LI 
Sbjct: 294 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 353

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
           GLC  G T++A+ LF ++ +  I++ +V TY ++I GYCKE K+
Sbjct: 354 GLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKL 397


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM+ KG      
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKF 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F +       P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   +  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +   L  ++L+ GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD   YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|296081998|emb|CBI21003.3| unnamed protein product [Vitis vinifera]
          Length = 837

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 179/390 (45%), Gaps = 15/390 (3%)

Query: 50  ITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSC 109
           I +    + Q  L+ IP   FN     R +LK       S  F + +        ++ + 
Sbjct: 376 IEKASELYTQMKLNGIPPSVFNVNSLLRGYLKAPLWEEASKLFDEAVDCGVA---NIFTY 432

Query: 110 NVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N++   L +      A   LD+    G  PN  S    I   C  G ++ A   FS +  
Sbjct: 433 NIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVVSYNDMILGHCRKGNMDMASSVFSDMLA 492

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
             +  ++ T++  + G  K   ++    L+  ++             +I   C  G++SE
Sbjct: 493 RDLKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSE 552

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             + L+  LE+G +P    +N ++  F ++ N      +   M     +P+  TY  +IN
Sbjct: 553 ARDKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLIN 612

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CKS +   A +  ++++E+G   D   Y+ +I G CK   +  A+ ++FE++  GL P
Sbjct: 613 GFCKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSP 672

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N   YNSMI G+  ++N+E A   +K+M++        TY TLI GL   GR   A  L+
Sbjct: 673 NRIVYNSMISGFRDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLY 732

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            EM  KGI  D+IT++ L+ G C +G++ N
Sbjct: 733 MEMLSKGIVPDIITFHVLVNGLCNKGQLEN 762



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 160/333 (48%), Gaps = 14/333 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
             P++V+ ++L D   +    + A+D  D   S   +P   +    I  LC+ G + EA 
Sbjct: 495 LKPNVVTYSILIDGNFKKGDSEKALDLFDQMLSLNIAPTDFTFNTIINGLCKVGQMSEAR 554

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
                  E G   S  T+NS + G IK    D    +Y ++ E G          LI  F
Sbjct: 555 DKLKNFLEEGFIPSCMTYNSIVDGFIKEGNIDSALAVYREMCEFGVSPNVVTYTSLINGF 614

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C   ++    +   ++ E GL  + TA++ LI  FC++++     +L   ++    +P+ 
Sbjct: 615 CKSNRIDLALKTRDEMREKGLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNR 674

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWF 328
             Y  +I+G  +    +EA  V+        +P D   YTT+I GL K G L  A  ++ 
Sbjct: 675 IVYNSMISGF-RDLNNMEAALVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYM 733

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG++P+  T++ +++G C    LE A+++ +EM  K    + + YNTLIAG    G
Sbjct: 734 EMLSKGIVPDIITFHVLVNGLCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREG 793

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              EA+ L +EM  +G+  D +TY+ LI G  K
Sbjct: 794 NLKEAFTLHDEMLDRGLVPDDVTYDILINGKFK 826



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 140/315 (44%), Gaps = 43/315 (13%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------Y 204
           IE A   F+ +    V   +   N  L   ++ +    +  LY+ ++  G          
Sbjct: 166 IENAIDCFNAMICQDVIPWVPYMNILLTALVRRNMIGELRDLYNKMVLRGIYGDHFTVHV 225

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++A   +G+V E  E  R+  E G+  +  A++ +I   C+K N     ELL  M  R 
Sbjct: 226 MVRACLKEGRVEEAEEYFRETKERGVKLDAGAYSIIIQAVCKKPNSNLGLELLEEMKERG 285

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   T+  VI         +EA R+  ++   G   + V+ T+++ G C  G L  A 
Sbjct: 286 WVPSEATFTSVIVACVAQGNMVEALRLKEEMINCGKPMNLVVATSLMKGYCAQGNLDSAL 345

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--------------LDKGY 370
            ++ ++   GL PN+ TY+ +I G C   N+E+A  L+ +M              L +GY
Sbjct: 346 NLFNKITEDGLFPNKVTYSVLIEGCCNSGNIEKASELYTQMKLNGIPPSVFNVNSLLRGY 405

Query: 371 GETTV--------------------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            +  +                    TYN +++ LC  G+ DEA  L + M  +G+  +V+
Sbjct: 406 LKAPLWEEASKLFDEAVDCGVANIFTYNIMMSWLCKGGKMDEACSLLDNMVNQGMVPNVV 465

Query: 411 TYNTLIQGYCKEGKI 425
           +YN +I G+C++G +
Sbjct: 466 SYNDMILGHCRKGNM 480



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/198 (22%), Positives = 80/198 (40%), Gaps = 12/198 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+ + + L D   + R  + A D    L   G SPN       I    +   +E A
Sbjct: 634 GLELDVTAYSALIDGFCKRRDMESAQDLFFELLEVGLSPNRIVYNSMISGFRDLNNMEAA 693

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              + K+    +   + T+ + + G +K  R      LY +++  G          L+  
Sbjct: 694 LVWYKKMINDRIPCDLGTYTTLIDGLLKEGRLVFASDLYMEMLSKGIVPDIITFHVLVNG 753

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN G++    ++L ++    + P    +N LI+ +  + N      L   M+ R   PD
Sbjct: 754 LCNKGQLENARKILEEMDRKNMTPSVLIYNTLIAGYFREGNLKEAFTLHDEMLDRGLVPD 813

Query: 269 NFTYEEVINGLCKSRKRL 286
           + TY+ +ING  K  + L
Sbjct: 814 DVTYDILINGKFKGDRSL 831


>gi|356503775|ref|XP_003520679.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 93/274 (33%), Positives = 133/274 (48%), Gaps = 26/274 (9%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           LC  G IE+A    +KL E GV  S  ++N                           L+ 
Sbjct: 335 LCRVGRIEKAEEVLAKLVENGVTPSKISYN--------------------------ILVN 368

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A+C +G V +      Q+ E GL P    FN +IS+FCE          +  MV +  +P
Sbjct: 369 AYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGVSP 428

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +ING  +    +  +   +++ + G  P+ + Y ++I+ LCK   L DA  + 
Sbjct: 429 TVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVL 488

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI +G+ PN   YN +I   C +  L++A R   EM+  G   T VTYNTLI GL  +
Sbjct: 489 ADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRN 548

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           GR  +A  LF +MA KG   DVITYN+LI GY K
Sbjct: 549 GRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAK 582



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 160/367 (43%), Gaps = 48/367 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P  +S N+L ++  +    K A+   + ++  G  PN  +    I   CE+G ++ A
Sbjct: 355 GVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHA 414

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG---------CIK-IDRTDLVWKLYHDLIESGYLIQ 207
                ++ E GV  +++T+NS + G         C + +D  D    +  ++I  G LI 
Sbjct: 415 ETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAG-IKPNVISYGSLIN 473

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C D K+ +   +L  ++  G+ P    +N LI   C              M+      
Sbjct: 474 CLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDA 533

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----------- 316
              TY  +INGL ++ +  +A  +F  +  +G  PD + Y ++I G  K           
Sbjct: 534 TLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLISGYAKSVNTQKCLELY 593

Query: 317 --MGWLG---------------------DARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
             M  LG                        KM+ EM+   L+P+++ YN MI+ Y    
Sbjct: 594 DKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVPDQFVYNEMIYSYAEDG 653

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           N+ +A  LH++M+D+G     VTYN+LI       R  E  HL ++M  KG+   V TYN
Sbjct: 654 NVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLVDDMKAKGLVPKVDTYN 713

Query: 414 TLIQGYC 420
            LI+G C
Sbjct: 714 ILIKGLC 720



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 157/365 (43%), Gaps = 40/365 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + + N++   L + R  K A    D        PN  +    I   C+ G IEEA
Sbjct: 187 GMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEA 246

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------------ 205
                ++KE  V  ++ T+NS L G     R D   ++  ++  SG+L            
Sbjct: 247 LGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDH 306

Query: 206 -------------------------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                                    +   C  G++ +  E+L +++E+G+ P   ++N L
Sbjct: 307 SNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNIL 366

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++ +C++ +  +       M  R   P+  T+  VI+  C++ +   A      + E+G 
Sbjct: 367 VNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAETWVRRMVEKGV 426

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P    Y ++I+G  + G      +   EM   G+ PN  +Y S+I+  C+   L +A+ 
Sbjct: 427 SPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEI 486

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  +M+ +G       YN LI   C   +  +A+  F+EM Q GI   ++TYNTLI G  
Sbjct: 487 VLADMIGRGVSPNAEIYNMLIEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLG 546

Query: 421 KEGKI 425
           + G++
Sbjct: 547 RNGRV 551



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 153/316 (48%), Gaps = 38/316 (12%)

Query: 148 LCE-SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
           LC  S +++EA   +S +++ G   S ++ N  L   +     +    ++ D+I+SG   
Sbjct: 96  LCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDSGTRP 155

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                   +QA      + +G+EL++ +++DG+ P   A+N ++   C+ +      +L 
Sbjct: 156 DAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLF 215

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ RN  P+  TY  +I+G CK     EA      +KE+    + V Y ++++GLC  
Sbjct: 216 DEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGS 275

Query: 318 GWLGDARKMWFEMIHKGLLP----------------------------NEYTYNSMIHGY 349
           G + DAR++  EM   G LP                            +E TY  +++G 
Sbjct: 276 GRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGL 335

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           CR+  +E+A+ +  ++++ G   + ++YN L+   C  G   +A    E+M ++G+  + 
Sbjct: 336 CRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNR 395

Query: 410 ITYNTLIQGYCKEGKI 425
           IT+NT+I  +C+ G++
Sbjct: 396 ITFNTVISKFCETGEV 411



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 140/293 (47%), Gaps = 26/293 (8%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  S  + +   C+ G +++A     +++E G+  +  T+N+              
Sbjct: 355 GVTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNT-------------- 400

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                       +I  FC  G+V      +R+++E G+ P    +N LI+ + +K +F R
Sbjct: 401 ------------VISKFCETGEVDHAETWVRRMVEKGVSPTVETYNSLINGYGQKGHFVR 448

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             E L  M      P+  +Y  +IN LCK RK ++A  V  D+  RG  P+  +Y  +I 
Sbjct: 449 CFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNMLIE 508

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C +  L DA + + EMI  G+     TYN++I+G  R   +++A+ L  +M  KG   
Sbjct: 509 ASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNP 568

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +TYN+LI+G      T +   L+++M   GI   V T++ LI    KEG +
Sbjct: 569 DVITYNSLISGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVV 621



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 155/368 (42%), Gaps = 42/368 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFK----VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF P   S N L  +LV++R F+    V  D +DS G  P+  +    +Q       +++
Sbjct: 117 GFVPSTRSVNRLLRTLVDSRHFEKTLAVFADVIDS-GTRPDAVAYGKAVQAAVMLKDLDK 175

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F     + + G+  S+  +N  L G  K+ R     KL+ ++I+            LI 
Sbjct: 176 GFELMKSMVKDGMGPSVFAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLID 235

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G + E      ++ E  +      +N L++  C         E+L  M      P
Sbjct: 236 GYCKVGGIEEALGFKERMKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLP 295

Query: 268 DNF----------------------------TYEEVINGLCKSRKRLEAYRVFNDLKERG 299
             F                            TY  ++NGLC+  +  +A  V   L E G
Sbjct: 296 GGFLSFVFDDHSNGAGDDGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENG 355

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P  + Y  +++  C+ G +  A     +M  +GL PN  T+N++I  +C    ++ A+
Sbjct: 356 VTPSKISYNILVNAYCQEGDVKKAILTTEQMEERGLEPNRITFNTVISKFCETGEVDHAE 415

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
              + M++KG   T  TYN+LI G    G     +   +EM + GI  +VI+Y +LI   
Sbjct: 416 TWVRRMVEKGVSPTVETYNSLINGYGQKGHFVRCFEFLDEMDKAGIKPNVISYGSLINCL 475

Query: 420 CKEGKIVN 427
           CK+ K+++
Sbjct: 476 CKDRKLID 483



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 139/304 (45%), Gaps = 38/304 (12%)

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRT-DLVWKLYHDLIESGY---------LIQAF 209
           AFS L E+    S   ++  LL    + +  D    LY  + + G+         L++  
Sbjct: 73  AFSSLSELHAHVSKPFFSDNLLWLCSVSKMLDEATDLYSTMRKDGFVPSTRSVNRLLRTL 132

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            +     +   +   V++ G  P+  A+ K +      K+  +  EL+ +MV     P  
Sbjct: 133 VDSRHFEKTLAVFADVIDSGTRPDAVAYGKAVQAAVMLKDLDKGFELMKSMVKDGMGPSV 192

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           F Y  V+ GLCK R+  +A ++F+++ +R  VP+TV Y T+I G CK+G + +A      
Sbjct: 193 FAYNLVLGGLCKVRRIKDARKLFDEMIQRNMVPNTVTYNTLIDGYCKVGGIEEALGFKER 252

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY-----------------GE 372
           M  + +  N  TYNS+++G C    +++A+ +  EM   G+                 G+
Sbjct: 253 MKEQNVECNLVTYNSLLNGLCGSGRVDDAREVLLEMEGSGFLPGGFLSFVFDDHSNGAGD 312

Query: 373 TTV-----------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             +           TY  L+ GLC  GR ++A  +  ++ + G+    I+YN L+  YC+
Sbjct: 313 DGLFDGKEIRIDERTYCILLNGLCRVGRIEKAEEVLAKLVENGVTPSKISYNILVNAYCQ 372

Query: 422 EGKI 425
           EG +
Sbjct: 373 EGDV 376



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 137/326 (42%), Gaps = 52/326 (15%)

Query: 90  IRFFQWLH--SHYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELY 144
           +R F++L      G  P+++S   L + L + R     ++ +  +   G SPN     + 
Sbjct: 447 VRCFEFLDEMDKAGIKPNVISYGSLINCLCKDRKLIDAEIVLADMIGRGVSPNAEIYNML 506

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKL----- 195
           I+  C    +++AF  F ++ + G+  ++ T+N+ + G  +  R     DL  ++     
Sbjct: 507 IEASCSLSKLKDAFRFFDEMIQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGC 566

Query: 196 ------YHDLIESGY------------------------------LIQAFCNDGKVSEGY 219
                 Y+ LI SGY                              LI A   +G V+   
Sbjct: 567 NPDVITYNSLI-SGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMD- 624

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           ++ +++L+  LVP+   +N++I  + E  N  +   L   MV +    D  TY  +I   
Sbjct: 625 KMFQEMLQMDLVPDQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAY 684

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            + R+  E   + +D+K +G VP    Y  +I GLC +     A   + EM+ +GLL N 
Sbjct: 685 LRDRRVSEIKHLVDDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNV 744

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEM 365
                +I G      L EA+ +  E+
Sbjct: 745 SMCYQLISGLREEGMLREAQIVSSEL 770



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/258 (24%), Positives = 117/258 (45%), Gaps = 12/258 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLEL--YI 145
           + RFF  +    G    LV+ N L + L      K A D FL   G   NP+ +     I
Sbjct: 519 AFRFFDEM-IQSGIDATLVTYNTLINGLGRNGRVKKAEDLFLQMAGKGCNPDVITYNSLI 577

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK--IDRTDLVWK--LYHDLIE 201
               +S   ++    + K+K +G+  ++ T++  +  C K  +   D +++  L  DL+ 
Sbjct: 578 SGYAKSVNTQKCLELYDKMKILGIKPTVGTFHPLIYACRKEGVVTMDKMFQEMLQMDLVP 637

Query: 202 SGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
             +    +I ++  DG V +   L +Q+++ G+  +   +N LI  +   +    +  L+
Sbjct: 638 DQFVYNEMIYSYAEDGNVMKAMSLHQQMVDQGVDCDKVTYNSLILAYLRDRRVSEIKHLV 697

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M A+   P   TY  +I GLC  +    AY  + ++ ERG + +  M   +I GL + 
Sbjct: 698 DDMKAKGLVPKVDTYNILIKGLCDLKDFNGAYFWYREMVERGLLLNVSMCYQLISGLREE 757

Query: 318 GWLGDARKMWFEMIHKGL 335
           G L +A+ +  E+   GL
Sbjct: 758 GMLREAQIVSSELSIGGL 775


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 145/298 (48%), Gaps = 12/298 (4%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           NP+   + I    E GL++EA   + K+   G F +++  N+ L G +K    D++W+LY
Sbjct: 118 NPSVFGVLIIAFSEVGLVDEALRVYLKV---GAFPAVQACNALLNGLLKKSSFDIMWELY 174

Query: 197 HDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
           ++++             L+ A C  G V     L+ ++++ G+ P    +  LI   C +
Sbjct: 175 NNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSE 234

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                   +   M      P+ +TY  +++G CK+    +A  ++  + + G  P+ V +
Sbjct: 235 SKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTF 294

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             +I  LCK+  L  AR+ + +M   G++PN   +NS+I GY +  N  EA  L  EM  
Sbjct: 295 GILIDALCKVRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEK 354

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                   TY+ LI   C  G  +EA  + + M ++G+  + + YN+LI GYCKEG +
Sbjct: 355 FKISPDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNM 412



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 114/299 (38%), Gaps = 53/299 (17%)

Query: 104 PDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V+ NVL D+     +    K  +  +   G  P        I  LC    + EA   
Sbjct: 184 PTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESM 243

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F ++K+ GVF ++ T+N  + G  K         LY  +++ G          LI A C 
Sbjct: 244 FRQMKDSGVFPNLYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCK 303

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             ++        Q+ + G+VP    FN LI  + +  N    ++LL  M     +PD FT
Sbjct: 304 VRELLAARRFFVQMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFT 363

Query: 272 YE-----------------------------------EVINGLCKS---RKRLEAYRV-- 291
           Y                                     +I+G CK     K LE ++   
Sbjct: 364 YSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIFKATK 423

Query: 292 -FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            F+D++  G  PD + Y  ++ G      + D   +  +MI  G++PNE T   +  GY
Sbjct: 424 FFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVVRRGY 482



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 68/137 (49%), Gaps = 4/137 (2%)

Query: 291 VFNDLKE-RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           VFN L + RG   +  ++  +I    ++G + +A +++ ++   G  P     N++++G 
Sbjct: 105 VFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKV---GAFPAVQACNALLNGL 161

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            +  + +    L+  M+ +    T VTYN L+   C  G    A  L  EM +KGI   V
Sbjct: 162 LKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSLISEMVKKGIEPTV 221

Query: 410 ITYNTLIQGYCKEGKIV 426
           + Y TLI G C E K++
Sbjct: 222 VIYTTLIHGLCSESKLM 238


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 163/329 (49%), Gaps = 20/329 (6%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
           S + +F +++E +  +++ D    +G           I    ESG + +A   +   KE 
Sbjct: 47  SASAVFAAILETKGTQIS-DIYVFSGL----------ITAYLESGFLRDAIECYRLTKEH 95

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG 218
                  T    +   +K+    LVW  Y + +E GY         L+ +F  +G++   
Sbjct: 96  KFRVPFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLA 155

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             +   + + GL P   +FN L++ + +  +      L + M A    PD +TY  +ING
Sbjct: 156 QSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLING 215

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK  K  +A  +F+++   G VP+ V +TT+I G CK G +  A +++ +M+ + L P+
Sbjct: 216 LCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPD 275

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYN++I+G C+  +L++A+ L  EM  KG     +TY TLI G C  G  + A+   +
Sbjct: 276 LITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRK 335

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 336 RMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 163/367 (44%), Gaps = 31/367 (8%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHY---GFSPDLVSC---------NVLFDS-------L 116
           F   L+ +   +  I  F  L + Y   GF  D + C          V FD+       L
Sbjct: 52  FAAILETKGTQISDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTXRKVIEHL 111

Query: 117 VEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           ++ + FK+   F + +     P SL  +   +    + G I  A   F  + + G+  S+
Sbjct: 112 MKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSV 171

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
            ++N+ + G IK+   D  ++L + +  SG          LI   C + K+ +  EL  +
Sbjct: 172 VSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDE 231

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +L +GLVP    F  LI   C+        E+   M++++ +PD  TY  +I GLCK   
Sbjct: 232 MLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGD 291

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             +A  + +++  +G  PD + YTT+I G CK G L  A +    MI + +  ++  Y +
Sbjct: 292 LKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTA 351

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G C+     +A+++ +EML  G      TY  +I   C  G       L +EM + G
Sbjct: 352 LISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411

Query: 405 IFRDVIT 411
               V+T
Sbjct: 412 YVPSVVT 418


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 158/349 (45%), Gaps = 15/349 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F     SH    P   S N L   LV A+   +A     S      SP+  +    I  L
Sbjct: 142 FLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGL 201

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDL--VWKLYHDLIESG-- 203
           C  G + +A      +K  G+  S+ T+NS + G C K    ++  V  L  +++E+G  
Sbjct: 202 CRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGIS 261

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C +   +    +  ++ + G+      +N LIS  C +       +L
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M     +P+  T+  V+ G CK     +A    + + ER   PD V+Y  +I    +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G + DA  +   M  KG+ PN  TYN +I G+ R  +   A  L  EM +KG     VT
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           YN LI  LC  G   +A  L +EM++ G+  + +TYNT+IQG+C +G I
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P  ++ N L++     K      +   + + R  +PD +T+  VI+GLC+  +  +A  V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGD---ARKMWFEMIHKGLLPNEYTYNSMIHG 348
             D+K  G  P    Y ++I G CK G  G+      +  EM+  G+ P   T+  +I+G
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC+  N   A R+ +EM  +G   + VTYN+LI+GLC  G+ +E   L EEM   G+  +
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 409 VITYNTLIQGYCKEGKIVN 427
            IT+  +++G+CK+G + +
Sbjct: 334 EITFGCVLKGFCKKGMMAD 352



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 21/342 (6%)

Query: 100 YGFSPDLVSCNVLFDSLVE----ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGL 153
           +G +P + + N L D   +       + V M    +   G SP   +  + I   C++  
Sbjct: 220 WGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSN 279

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGY 204
              A   F ++K+ G+  S+ T+NS + G     + +   KL  ++         I  G 
Sbjct: 280 TAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGC 339

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMV 261
           +++ FC  G +++  + +  + E  + P+   +N LI  +   +  G++ + +     M 
Sbjct: 340 VLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVY---RRLGKMEDAMAVKEAMA 396

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            +  +P+  TY  +I G  +S     A  + +++KE+G   D V Y  +I  LC  G + 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVR 456

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A K+  EM   GL PN  TYN++I G+C   N++ A  +   M         VTYN  I
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              C  G+ DEA  L  EM  K +  + ITY T+ +G  ++G
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 35/227 (15%)

Query: 104 PDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           PD+V  N+L D       + +A A K AM      G SPN  +    I     SG    A
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMA---KKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++KE G+   + T+N                           LI A C  G+V +
Sbjct: 424 SGLLDEMKEKGIEADVVTYN--------------------------VLIGALCCKGEVRK 457

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL ++ E GL P +  +N +I  FC+K N     E+   M    +  +  TY   I 
Sbjct: 458 AVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIK 517

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             C+  K  EA  + N++ ++  VP+ + Y T+  G+ + G+  D R
Sbjct: 518 YFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIR 564


>gi|224118166|ref|XP_002317747.1| predicted protein [Populus trichocarpa]
 gi|222858420|gb|EEE95967.1| predicted protein [Populus trichocarpa]
          Length = 498

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/351 (27%), Positives = 171/351 (48%), Gaps = 18/351 (5%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L+++ F  +   +   P +   N L +  V+ + + +    L    D  G  PN  S  +
Sbjct: 104 LALKTFTRIKEEFSMQPSVKLLNTLLNVFVQNKRYHLVGSTLKNCKDKYGVLPNVFSFNI 163

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV--WKLYHDLIE 201
            I+ LC+   +E A   F ++  MG+  ++ T+ + L G +   R DLV   K++ ++ +
Sbjct: 164 LIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVS--RGDLVNAEKVFSEISD 221

Query: 202 SGYLIQA---------FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+L  A         +C  G++S+  +++  +  +G+ P    +  +I  +C++K  G 
Sbjct: 222 KGWLPDATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGE 281

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              L+  M+ +   P +    +VI+ LC+  K   A  ++  + E+  +PD  + +T+IH
Sbjct: 282 ARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIH 341

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            LCK G + +ARK+ F+   +G +P+  TYN++I G C    L EA RL  +M++K    
Sbjct: 342 WLCKEGKVWEARKL-FDEFEQGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRP 400

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              TYN LI G    G   E   + EEM   G   +  TY  LI+G  + G
Sbjct: 401 NAFTYNMLIKGFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQESG 451



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 162/362 (44%), Gaps = 36/362 (9%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           P      +  Q N+ L+ + F +    H GFS    + + + D L  ARAF      L  
Sbjct: 15  PKRLISMITHQENLDLAFQIFDYAGKYHPGFSHTYDTYHSIIDKLSRARAFDGVESLL-- 72

Query: 132 TGFSPNPNSL----ELYIQCLCESGLIEE---AFCAFSKLKE-MGVFGSIKTWNSALLGC 183
           +  S N + +    +++I  +   GL      A   F+++KE   +  S+K  N+ L   
Sbjct: 73  SQLSRNSSHIKCGDDVFISVIRNYGLAGRPRLALKTFTRIKEEFSMQPSVKLLNTLLNVF 132

Query: 184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           ++  R  LV     +           C D              + G++P   +FN LI  
Sbjct: 133 VQNKRYHLVGSTLKN-----------CKD--------------KYGVLPNVFSFNILIKA 167

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C+K +     ++   M      P+  TY  ++ G       + A +VF+++ ++G++PD
Sbjct: 168 LCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVNAEKVFSEISDKGWLPD 227

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              YT ++ G CK G L DA K+   M + G+ PNE TY  MI  YC+     EA+ L  
Sbjct: 228 ATTYTVLMVGYCKQGRLSDAIKVMDNMEYNGVEPNEVTYGVMIDAYCKEKKSGEARNLID 287

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +MLDK +  ++     +I  LC  G+ + A HL++ M +K    D    +TLI   CKEG
Sbjct: 288 DMLDKKFLPSSTLCCKVIDVLCEDGKVENACHLWKRMLEKNCLPDNAIMSTLIHWLCKEG 347

Query: 424 KI 425
           K+
Sbjct: 348 KV 349



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 94/229 (41%), Gaps = 30/229 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+  V+ D+  + +    A + +D      F P+       I  LCE G +E A
Sbjct: 258 GVEPNEVTYGVMIDAYCKEKKSGEARNLIDDMLDKKFLPSSTLCCKVIDVLCEDGKVENA 317

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              + ++ E          ++A++                       LI   C +GKV E
Sbjct: 318 CHLWKRMLEKNCLP-----DNAIMST---------------------LIHWLCKEGKVWE 351

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +L  +  E G +P    +N LI+  CE+        L   MV +   P+ FTY  +I 
Sbjct: 352 ARKLFDE-FEQGTIPSLMTYNTLIAGMCERGELNEAGRLWDDMVEKRCRPNAFTYNMLIK 410

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           G  K+    E  R+  ++ + G +P+   YT +I GL + G  GD  K+
Sbjct: 411 GFMKAGVVKEGVRILEEMLDNGCLPNKSTYTLLIEGLQESGMEGDVDKV 459



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%)

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           ++N LI  LC     + A  +F+EM   G+  +++TY T++ G+   G +VN
Sbjct: 160 SFNILIKALCKKNDVENALKVFDEMPTMGMIPNLVTYTTILGGFVSRGDLVN 211


>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
          Length = 974

 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ++G  PN       I+   ++    +A     ++KE G+   I  +NS ++G  K  R D
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGY----------ELLRQVLEDGLVPENTAFNKL 240
                  +++E+G    AF     +S GY          + ++++ E G++P       L
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFIS-GYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+ +C+K           +MV +    D  TY  ++NGL K+ K  +A  +F +++ +G 
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD   Y  +I+G  K+G +  A  ++ EM+ +GL PN   YN ++ G+CR   +E+AK 
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  EM  KG     VTY T+I G C  G   EA+ LF+EM  KG+  D   Y TL+ G C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 421 K 421
           +
Sbjct: 744 R 744



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 160/373 (42%), Gaps = 50/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +        +EA  F  A  ++      G  PN       I   C+ G + EA
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             A+  + + G+ G  KT+   + G  K D+ D   +++          D+   G LI  
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + +   +  +++E+GL P    +N L+  FC      +  ELL  M  +   P+
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM-- 326
             TY  +I+G CKS    EA+R+F+++K +G VPD+ +YTT++ G C++  +  A  +  
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756

Query: 327 ------------------WFEMIHKGLL------------------PNEYTYNSMIHGYC 350
                             W     K  L                  PN+ TYN MI   C
Sbjct: 757 TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +  NLE AK L  +M +     T +TY +L+ G    GR  E + +F+E    GI  D I
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHI 876

Query: 411 TYNTLIQGYCKEG 423
            Y+ +I  + KEG
Sbjct: 877 MYSVIINAFLKEG 889



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 186/437 (42%), Gaps = 54/437 (12%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSF-----NFNDPLFFREFLKQQNNVLLSIRFFQ 94
           Y  +   +CKI R +    ++LL ++ S      N    L     LK +N         +
Sbjct: 280 YDVLIDGLCKIKRLED--AKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 95  WLHSHYGFSPDLVSCN--VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
            +       P +  C   V+    V  +A K   D + ++G  P   +    I+  C   
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKA-KALFDGMIASGLIPQAQAYASLIEGYCREK 396

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------- 203
            + + +    ++K+  +  S  T+ + + G       D  + +  ++I SG         
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI+ F  + +  +   +L+++ E G+ P+   +N LI    + K        L  MV  
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN 516

Query: 264 NRAPDNFTYEEVINGL-----------------------------------CKSRKRLEA 288
              P+ FTY   I+G                                    CK  K +EA
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              +  + ++G + D   YT +++GL K   + DA +++ EM  KG+ P+ ++Y  +I+G
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           + ++ N+++A  +  EM+++G     + YN L+ G C  G  ++A  L +EM+ KG+  +
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 409 VITYNTLIQGYCKEGKI 425
            +TY T+I GYCK G +
Sbjct: 697 AVTYCTIIDGYCKSGDL 713



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 9/303 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P   + ++ I  LC+   +E+A     ++  +GV     T++  + G +K    D  
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 193 WKLYHDLIESGYLIQAFCND---------GKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L H+++  G  I+ +  D         G + +   L   ++  GL+P+  A+  LI  
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C +KN  +  ELL  M  RN     +TY  V+ G+C S     AY +  ++   G  P+
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V+YTT+I    +    GDA ++  EM  +G+ P+ + YNS+I G  +   ++EA+    
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM++ G      TY   I+G         A    +EM + G+  + +    LI  YCK+G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571

Query: 424 KIV 426
           K++
Sbjct: 572 KVI 574



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 151/336 (44%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V    L  + ++   F  AM  L      G +P+       I  L ++  ++EA
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                ++ E G+  +  T+ + + G I+        K   ++ E G L         I  
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  GKV E     R +++ G++ +   +  L++   +        E+   M  +  APD
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F+Y  +ING  K     +A  +F+++ E G  P+ ++Y  ++ G C+ G +  A+++  
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL PN  TY ++I GYC+  +L EA RL  EM  KG    +  Y TL+ G C   
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLN 746

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             + A  +F    +KG       +N LI    K GK
Sbjct: 747 DVERAITIFGT-NKKGCASSTAPFNALINWVFKFGK 781



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 129/301 (42%), Gaps = 30/301 (9%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           IEEA   FS    + +   +      L   ++ +R DL W +Y  ++E            
Sbjct: 167 IEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTYHM 226

Query: 205 LIQAFCNDGKVSEGYELL---------------------RQVLEDGLVPENTAFNKLISR 243
           LI A C  G V  G ++L                       ++  GLVP    ++ LI  
Sbjct: 227 LIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLIDG 286

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C+ K       LL  M +   + DN TY  +I+GL K R    A  + +++   G    
Sbjct: 287 LCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGINIK 346

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
             MY   I  + K G +  A+ ++  MI  GL+P    Y S+I GYCR  N+ +   L  
Sbjct: 347 PYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYELLV 406

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  +    +  TY T++ G+C  G  D AY++ +EM   G   +V+ Y TLI+ + +  
Sbjct: 407 EMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNS 466

Query: 424 K 424
           +
Sbjct: 467 R 467



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 20/306 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+++  N+L      +   + A + LD     G  PN  +    I   C+SG + EA
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY--------HDLIESGYLIQAF 209
           F  F ++K  G+      + + + GC +++  +    ++                LI   
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWV 776

Query: 210 CNDGKVSEGYELLRQVLEDGL----VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
              GK     E+L ++++        P +  +N +I   C++ N     EL H M   N 
Sbjct: 777 FKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANL 836

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  ++NG  K  +R E + VF++    G  PD +MY+ +I+   K G    A  
Sbjct: 837 MPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALV 896

Query: 326 MWFEMIHKGLLPNE-----YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
           +  +M  K  + +       T  +++ G+ ++  +E A+++ + M+   Y   + T   L
Sbjct: 897 LVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIEL 956

Query: 381 IAGLCL 386
           I   C+
Sbjct: 957 INESCI 962



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I  LC+ G +E A   F +++   +  ++ T+ S L G  K+ R   ++ +
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQV-----LEDGLVPENTAFNKLI 241
           + + I +G          +I AF  +G  ++   L+ Q+     ++DG     +    L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC-KSRKRLEAYRV 291
           S F +        +++  MV     PD+ T  E+IN  C  S +R+EA  V
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y +++E GY
Sbjct: 62  ITAYLESGFLRDAXECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGY 121

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G +     +   + + GL P   +FN L++ +    +      
Sbjct: 122 PASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFR 181

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 182 LKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHC 241

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 242 KNGRVDLAMEIYKQMLSQSLXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 301

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M Q+ I  D + Y  LI G C+E + ++
Sbjct: 302 TYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLD 353



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 146/305 (47%), Gaps = 12/305 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F+ +
Sbjct: 92  TCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAI 151

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L + +  SG          LI   C + K+
Sbjct: 152 TKWGLRPSVVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKM 211

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +  E+  ++L+ GLVP    F  LI   C+        E+   M++++  PD  TY  +
Sbjct: 212 DDANEMFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTL 271

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 272 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXI 331

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+ +   +A+++ +EML  G    T TY  +I   C  G       
Sbjct: 332 RLDDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSK 391

Query: 396 LFEEM 400
           L +EM
Sbjct: 392 LLKEM 396


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    +   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC  G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI   C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVD 364


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 157/334 (47%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+ N+L +          +   L      G+ PN  +L   ++ LC  G ++++
Sbjct: 82  GIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKS 141

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+   G   +  ++ + L G  KI  T    K    + +S           +I  
Sbjct: 142 VHFHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDG 201

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C D  V+E Y+   ++   G+ P    +  LI  FC          LL+ M+ +N  P+
Sbjct: 202 LCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPN 261

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I+ LCK  K  EA  +  ++  RG   D V YT+++ G CK   L  A  ++ 
Sbjct: 262 VYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFM 321

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G+ PN+YTY ++I G C+   L++A++L +++L KG      TYN +I GLC  G
Sbjct: 322 KMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEG 381

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             DEA  +  +M   G   +V+T+  +I+   K+
Sbjct: 382 MLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKK 415



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/376 (26%), Positives = 171/376 (45%), Gaps = 24/376 (6%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSI--RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
           P+F    PL+F       +NV+     +F   L  H+  +P +V    +   L + + + 
Sbjct: 16  PTF----PLYFHSQPPSIDNVVDDAISQFNGMLLMHH--TPPIVEFGEILGYLAKMKHYS 69

Query: 124 VAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
            A+     ++  G  PN  +L + I C C  G +  +F    K+ ++G   +  T  + +
Sbjct: 70  TAISLSKQMEVKGIEPNLVTLNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLM 129

Query: 181 LG-CIKIDRTDLVWKLYHDLIES----------GYLIQAFCNDGKVSEGYELLRQVLEDG 229
            G C+K +    V   +HD + +          G L+   C  G+     + LR + +  
Sbjct: 130 KGLCLKGEVQKSVH--FHDKVVAQGFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSS 187

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
                  +N +I   C+ K      +    M AR   P+  TY  +I G C + +   A+
Sbjct: 188 TGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAF 247

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            + N++  +   P+   Y  +I  LCK G + +A+ +  EM ++G   +  TY S++ G+
Sbjct: 248 SLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGF 307

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+  NL++A  L  +M + G      TY  LI GLC  GR  +A  LF+++  KG   DV
Sbjct: 308 CKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDV 367

Query: 410 ITYNTLIQGYCKEGKI 425
            TYN +I G CKEG +
Sbjct: 368 CTYNVMIGGLCKEGML 383



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 29/310 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           GF  + VS   L + L +    + A+ FL     S    ++ +Y   I  LC+  L+ EA
Sbjct: 152 GFQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEA 211

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           +  +S++   G+F ++ T+ +                          LI  FC  G+++ 
Sbjct: 212 YDFYSEMNARGIFPNVITYTT--------------------------LIGGFCLAGQLTG 245

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            + LL +++   + P    +  LI   C++        LL  M  R +  D  TY  +++
Sbjct: 246 AFSLLNEMILKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLD 305

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK++   +A  +F  +KE G  P+   YT +I GLCK G L DA+K++ +++ KG   
Sbjct: 306 GFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCI 365

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN MI G C+   L+EA  +  +M D G     VT+  +I  L      D+A  L 
Sbjct: 366 DVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLL 425

Query: 398 EEMAQKGIFR 407
            EM  KG+ R
Sbjct: 426 HEMIAKGLLR 435


>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16420, mitochondrial; Flags: Precursor
 gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 535

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 171/349 (48%), Gaps = 15/349 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELY 144
           S+R F  +   +G    + S N L + L++ + F +         +S G +PN  +  L 
Sbjct: 139 SMRIFLRI-PDFGVKRSVRSLNTLLNVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLL 197

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           ++ LC+   IE A+    ++  MG+  ++ T+ + L G +     +   ++  ++++ G+
Sbjct: 198 VKALCKKNDIESAYKVLDEIPSMGLVPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGW 257

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G+ SE   ++  + ++ + P    +  +I   C++K  G    
Sbjct: 258 YPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARN 317

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   M+ R+  PD+    +VI+ LC+  K  EA  ++  + +   +PD  + +T+IH LC
Sbjct: 318 MFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLC 377

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G + +ARK+ F+   KG +P+  TYN++I G C    L EA RL  +M ++       
Sbjct: 378 KEGRVTEARKL-FDEFEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAF 436

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TYN LI GL  +G   E   + EEM + G F +  T+  L +G  K GK
Sbjct: 437 TYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGK 485



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 173/370 (46%), Gaps = 17/370 (4%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWL-HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           P      + QQ N+ L+++ F +   SH GF+ +  + + +   L  ARAF      +  
Sbjct: 49  PKRLVSMITQQQNIDLALQIFLYAGKSHPGFTHNYDTYHSILFKLSRARAFDPVESLMAD 108

Query: 132 --TGFSPNPNSLELYIQCLCESGLI---EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
               + P      L+I  L   GL    E +   F ++ + GV  S+++ N+ L   I+ 
Sbjct: 109 LRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNTLLNVLIQN 168

Query: 187 DRTDLVWKLYHDLIES----------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
            R DLV  ++ +  ES            L++A C    +   Y++L ++   GLVP    
Sbjct: 169 QRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGLVPNLVT 228

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +  ++  +  + +      +L  M+ R   PD  TY  +++G CK  +  EA  V +D++
Sbjct: 229 YTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAATVMDDME 288

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           +    P+ V Y  +I  LCK    G+AR M+ EM+ +  +P+      +I   C    ++
Sbjct: 289 KNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALCEDHKVD 348

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  L ++ML           +TLI  LC  GR  EA  LF+E  +KG    ++TYNTLI
Sbjct: 349 EACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-EKGSIPSLLTYNTLI 407

Query: 417 QGYCKEGKIV 426
            G C++G++ 
Sbjct: 408 AGMCEKGELT 417



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 156/339 (46%), Gaps = 20/339 (5%)

Query: 85  NVLLSIRFFQWLHS-------HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGF 134
           NVL+  + F  +H+        +G +P++ +CN+L  +L +    + A   LD   S G 
Sbjct: 163 NVLIQNQRFDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEIPSMGL 222

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            PN  +    +      G +E A     ++ + G +    T+   + G  K+ R      
Sbjct: 223 VPNLVTYTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCKLGRFSEAAT 282

Query: 195 LYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +  D+         +  G +I+A C + K  E   +  ++LE   +P+++   K+I   C
Sbjct: 283 VMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLCCKVIDALC 342

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           E         L   M+  N  PDN     +I+ LCK  +  EA ++F++  E+G +P  +
Sbjct: 343 EDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGRVTEARKLFDEF-EKGSIPSLL 401

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T+I G+C+ G L +A ++W +M  +   PN +TYN +I G  +  N++E  R+ +EM
Sbjct: 402 TYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEEM 461

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           L+ G      T+  L  GL   G+ ++A  +       G
Sbjct: 462 LEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVSMAVMNG 500



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 102/251 (40%), Gaps = 13/251 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD  +  VL D   +   F  A   MD ++     PN  +  + I+ LC+     EA
Sbjct: 256 GWYPDATTYTVLMDGYCKLGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEA 315

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F ++ E             +    +  + D    L+  ++++           LI  
Sbjct: 316 RNMFDEMLERSFMPDSSLCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHW 375

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G+V+E  +L  +  E G +P    +N LI+  CEK        L   M  R   P+
Sbjct: 376 LCKEGRVTEARKLFDE-FEKGSIPSLLTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPN 434

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +I GL K+    E  RV  ++ E G  P+   +  +  GL K+G   DA K+  
Sbjct: 435 AFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKIVS 494

Query: 329 EMIHKGLLPNE 339
             +  G +  E
Sbjct: 495 MAVMNGKVDKE 505


>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g61990, mitochondrial; Flags: Precursor
 gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 974

 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ++G  PN       I+   ++    +A     ++KE G+   I  +NS ++G  K  R D
Sbjct: 445 ASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMD 504

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGY----------ELLRQVLEDGLVPENTAFNKL 240
                  +++E+G    AF     +S GY          + ++++ E G++P       L
Sbjct: 505 EARSFLVEMVENGLKPNAFTYGAFIS-GYIEASEFASADKYVKEMRECGVLPNKVLCTGL 563

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+ +C+K           +MV +    D  TY  ++NGL K+ K  +A  +F +++ +G 
Sbjct: 564 INEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGI 623

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD   Y  +I+G  K+G +  A  ++ EM+ +GL PN   YN ++ G+CR   +E+AK 
Sbjct: 624 APDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKE 683

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L  EM  KG     VTY T+I G C  G   EA+ LF+EM  KG+  D   Y TL+ G C
Sbjct: 684 LLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCC 743

Query: 421 K 421
           +
Sbjct: 744 R 744



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 160/373 (42%), Gaps = 50/373 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +        +EA  F  A  ++      G  PN       I   C+ G + EA
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
             A+  + + G+ G  KT+   + G  K D+ D   +++          D+   G LI  
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G + +   +  +++E+GL P    +N L+  FC      +  ELL  M  +   P+
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM-- 326
             TY  +I+G CKS    EA+R+F+++K +G VPD+ +YTT++ G C++  +  A  +  
Sbjct: 697 AVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFG 756

Query: 327 ------------------WFEMIHKGLL------------------PNEYTYNSMIHGYC 350
                             W     K  L                  PN+ TYN MI   C
Sbjct: 757 TNKKGCASSTAPFNALINWVFKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLC 816

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +  NLE AK L  +M +     T +TY +L+ G    GR  E + +F+E    GI  D I
Sbjct: 817 KEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHI 876

Query: 411 TYNTLIQGYCKEG 423
            Y+ +I  + KEG
Sbjct: 877 MYSVIINAFLKEG 889



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 100/437 (22%), Positives = 186/437 (42%), Gaps = 54/437 (12%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSF-----NFNDPLFFREFLKQQNNVLLSIRFFQ 94
           Y  +   +CKI R +    ++LL ++ S      N    L     LK +N         +
Sbjct: 280 YDVLIDGLCKIKRLED--AKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 95  WLHSHYGFSPDLVSCN--VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
            +       P +  C   V+    V  +A K   D + ++G  P   +    I+  C   
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKA-KALFDGMIASGLIPQAQAYASLIEGYCREK 396

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------- 203
            + + +    ++K+  +  S  T+ + + G       D  + +  ++I SG         
Sbjct: 397 NVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI+ F  + +  +   +L+++ E G+ P+   +N LI    + K        L  MV  
Sbjct: 457 TLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVEN 516

Query: 264 NRAPDNFTYEEVINGL-----------------------------------CKSRKRLEA 288
              P+ FTY   I+G                                    CK  K +EA
Sbjct: 517 GLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIEA 576

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              +  + ++G + D   YT +++GL K   + DA +++ EM  KG+ P+ ++Y  +I+G
Sbjct: 577 CSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLING 636

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           + ++ N+++A  +  EM+++G     + YN L+ G C  G  ++A  L +EM+ KG+  +
Sbjct: 637 FSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPN 696

Query: 409 VITYNTLIQGYCKEGKI 425
            +TY T+I GYCK G +
Sbjct: 697 AVTYCTIIDGYCKSGDL 713



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 9/303 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P   + ++ I  LC+   +E+A     ++  +GV     T++  + G +K    D  
Sbjct: 272 GLVPLKYTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAA 331

Query: 193 WKLYHDLIESGYLIQAFCND---------GKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L H+++  G  I+ +  D         G + +   L   ++  GL+P+  A+  LI  
Sbjct: 332 KGLVHEMVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG 391

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C +KN  +  ELL  M  RN     +TY  V+ G+C S     AY +  ++   G  P+
Sbjct: 392 YCREKNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPN 451

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V+YTT+I    +    GDA ++  EM  +G+ P+ + YNS+I G  +   ++EA+    
Sbjct: 452 VVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLV 511

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM++ G      TY   I+G         A    +EM + G+  + +    LI  YCK+G
Sbjct: 512 EMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKG 571

Query: 424 KIV 426
           K++
Sbjct: 572 KVI 574



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 151/336 (44%), Gaps = 13/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V    L  + ++   F  AM  L      G +P+       I  L ++  ++EA
Sbjct: 447 GCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEA 506

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                ++ E G+  +  T+ + + G I+        K   ++ E G L         I  
Sbjct: 507 RSFLVEMVENGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINE 566

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  GKV E     R +++ G++ +   +  L++   +        E+   M  +  APD
Sbjct: 567 YCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPD 626

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F+Y  +ING  K     +A  +F+++ E G  P+ ++Y  ++ G C+ G +  A+++  
Sbjct: 627 VFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLD 686

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KGL PN  TY ++I GYC+  +L EA RL  EM  KG    +  Y TL+ G C   
Sbjct: 687 EMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCRLN 746

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             + A  +F    +KG       +N LI    K GK
Sbjct: 747 DVERAITIFGT-NKKGCASSTAPFNALINWVFKFGK 781



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 130/303 (42%), Gaps = 30/303 (9%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           G IEEA   FS    + +   +      L   ++ +R DL W +Y  ++E          
Sbjct: 165 GYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNVVFDVKTY 224

Query: 205 --LIQAFCNDGKVSEGYELL---------------------RQVLEDGLVPENTAFNKLI 241
             LI A C  G V  G ++L                       ++  GLVP    ++ LI
Sbjct: 225 HMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLKYTYDVLI 284

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+ K       LL  M +   + DN TY  +I+GL K R    A  + +++   G  
Sbjct: 285 DGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEMVSHGIN 344

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
               MY   I  + K G +  A+ ++  MI  GL+P    Y S+I GYCR  N+ +   L
Sbjct: 345 IKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNVRQGYEL 404

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             EM  +    +  TY T++ G+C  G  D AY++ +EM   G   +V+ Y TLI+ + +
Sbjct: 405 LVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQ 464

Query: 422 EGK 424
             +
Sbjct: 465 NSR 467



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 20/306 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+++  N+L      +   + A + LD     G  PN  +    I   C+SG + EA
Sbjct: 657 GLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEA 716

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY--------HDLIESGYLIQAF 209
           F  F ++K  G+      + + + GC +++  +    ++                LI   
Sbjct: 717 FRLFDEMKLKGLVPDSFVYTTLVDGCCRLNDVERAITIFGTNKKGCASSTAPFNALINWV 776

Query: 210 CNDGKVSEGYELLRQVLEDGL----VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
              GK     E+L ++++        P +  +N +I   C++ N     EL H M   N 
Sbjct: 777 FKFGKTELKTEVLNRLMDGSFDRFGKPNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANL 836

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   TY  ++NG  K  +R E + VF++    G  PD +MY+ +I+   K G    A  
Sbjct: 837 MPTVITYTSLLNGYDKMGRRAEMFPVFDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALV 896

Query: 326 MWFEMIHKGLLPNE-----YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
           +  +M  K  + +       T  +++ G+ ++  +E A+++ + M+   Y   + T   L
Sbjct: 897 LVDQMFAKNAVDDGCKLSISTCRALLSGFAKVGEMEVAEKVMENMVRLQYIPDSATVIEL 956

Query: 381 IAGLCL 386
           I   C+
Sbjct: 957 INESCI 962



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 122/301 (40%), Gaps = 32/301 (10%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK--IDRTDLVWKLYHDLIESGYL 205
           LC  G  E+A     ++ E   +   + W S+++ C +  + ++D       D +  G L
Sbjct: 107 LCNFGSFEKALSVVERMIERN-WPVAEVW-SSIVRCSQEFVGKSD-------DGVLFGIL 157

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
              +   G + E   +    +   LVP  +    L+             ++   MV RN 
Sbjct: 158 FDGYIAKGYIEEAVFVFSSSMGLELVPRLSRCKVLLDALLRWNRLDLFWDVYKGMVERNV 217

Query: 266 APDNFTYEEVINGLC-------------KSRKRLEAYRVFND----LKE----RGYVPDT 304
             D  TY  +I   C             K+ K      +  D    LKE    +G VP  
Sbjct: 218 VFDVKTYHMLIIAHCRAGNVQLGKDVLFKTEKEFRTATLNVDGALKLKESMICKGLVPLK 277

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y  +I GLCK+  L DA+ +  EM   G+  + +TY+ +I G  +  N + AK L  E
Sbjct: 278 YTYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHE 337

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M+  G       Y+  I  +   G  ++A  LF+ M   G+      Y +LI+GYC+E  
Sbjct: 338 MVSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKN 397

Query: 425 I 425
           +
Sbjct: 398 V 398



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 15/171 (8%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I  LC+ G +E A   F +++   +  ++ T+ S L G  K+ R   ++ +
Sbjct: 803 PNDVTYNIMIDYLCKEGNLEAAKELFHQMQNANLMPTVITYTSLLNGYDKMGRRAEMFPV 862

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQV-----LEDGLVPENTAFNKLI 241
           + + I +G          +I AF  +G  ++   L+ Q+     ++DG     +    L+
Sbjct: 863 FDEAIAAGIEPDHIMYSVIINAFLKEGMTTKALVLVDQMFAKNAVDDGCKLSISTCRALL 922

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC-KSRKRLEAYRV 291
           S F +        +++  MV     PD+ T  E+IN  C  S +R+EA  V
Sbjct: 923 SGFAKVGEMEVAEKVMENMVRLQYIPDSATVIELINESCISSNQRVEADAV 973


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 20/348 (5%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQC 147
           RF +++ ++ G SPD+++C  L     +    K A   M  L+ +G   +  S  + I  
Sbjct: 100 RFLEYM-TNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISG 158

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW-----------KLY 196
            C+SG IEEA      L  MGV  +  T+++ L  C   DR  L             K Y
Sbjct: 159 YCKSGEIEEAL---RVLDRMGVSPNAATYDAVL--CSLCDRGKLKQAMQVLGRQLQSKCY 213

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    LI A C +  V +  +L  ++   G  P+   +N LI  FC+          
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  + +    PD  ++  ++  LC   + ++A ++   +  +G +P  V +  +I+ LC+
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G LG A  +   M   G  PN  ++N +I G+C    ++ A    + M+ +G     VT
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           YN L+  LC  G+ D+A  +  +++ KG    +I+YNT+I G  K GK
Sbjct: 394 YNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGK 441



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 144/332 (43%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+C VL D+  +      AM   +   + G  P+  +  + I+  C+ G ++EA   
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
             KL   G    + + N  L       R     KL   ++  G          LI   C 
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G + +   +L  + + G  P + +FN LI  FC  K   R  E L  MV+R   PD  T
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K  +A  + + L  +G  P  + Y TVI GL K+G    A ++  EM 
Sbjct: 394 YNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMC 453

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           +KGL P+  T  S++ G  R   + EA +    +           YN++I GLC   +T 
Sbjct: 454 YKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTS 513

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A     +M  KG      TY TLI+G   EG
Sbjct: 514 LAIDFLADMVAKGCKPTEATYTTLIKGITYEG 545



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 3/213 (1%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G++ EG   L  +   G  P+  A   LI  FC+       S+++  +       D  +
Sbjct: 92  NGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTS 151

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CKS +  EA RV + +   G  P+   Y  V+  LC  G L  A ++    +
Sbjct: 152 YNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQL 208

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                P+  T   +I   C+   + +A +L  EM +KG     VTYN LI G C  GR D
Sbjct: 209 QSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLD 268

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           EA    +++   G   DVI++N +++  C  G+
Sbjct: 269 EAIRFLKKLPSYGCQPDVISHNMILRSLCSGGR 301



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/173 (32%), Positives = 87/173 (50%), Gaps = 5/173 (2%)

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           S  L  M  + ++PD      +I   CK  +   A ++   L+E G V D   Y  +I G
Sbjct: 99  SRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISG 158

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR-LHKEMLDKGYGE 372
            CK G + +A ++   M   G+ PN  TY++++   C    L++A + L +++  K Y +
Sbjct: 159 YCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPD 215

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT   LI   C      +A  LF EM  KG   DV+TYN LI+G+CK G++
Sbjct: 216 -VVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRL 267



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 36/75 (48%)

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           R   LEE  R  + M +KG     +    LI   C  GRT  A  +   + + G   DV 
Sbjct: 91  RNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVIDVT 150

Query: 411 TYNTLIQGYCKEGKI 425
           +YN LI GYCK G+I
Sbjct: 151 SYNVLISGYCKSGEI 165


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/328 (31%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N +  SL        A  +LD   +    P+  S    I      G   EA
Sbjct: 307 GALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEA 366

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              FS+L+   +  S+ T+N+ + G  +    D+   +  D+I+ G          L++ 
Sbjct: 367 LLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRG 426

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G +    EL  ++L  GL P+  A+   I    +  N  +   +   M A    PD
Sbjct: 427 FCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPD 486

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGLCK     +A  +   ++  G VPD V YT++IH     G L  A +++ 
Sbjct: 487 LITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFS 546

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ KG+ P+  TY  +IH Y     L+ AK+   EM DKG     +TYN LI GLC   
Sbjct: 547 DMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKEN 606

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
             D AY+LF EM  KG+  +  TY  LI
Sbjct: 607 MMDVAYNLFAEMESKGVSPNKYTYTILI 634



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 173/368 (47%), Gaps = 29/368 (7%)

Query: 87  LLSIRFFQWLHSHYGFSPDLVSCNVLFDSL-----------VEARAFKVAMD--FLDS-T 132
           L ++RFF+W+     F     +   + D L           V  +A +V +D   LD   
Sbjct: 66  LTALRFFRWVEKQPNFHRSETAFVAILDILAKNGFMKPAYWVMEKAIEVKVDGGVLDVLV 125

Query: 133 GFSPNPNS------LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           G     NS      L+L IQ   +  ++E+    F K+   G+   ++  N  L      
Sbjct: 126 GIGCGRNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDK 185

Query: 187 DRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
              + V ++Y  +I+            ++ + C +G+V    E+L  +   G  P + ++
Sbjct: 186 SMVNEVEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSY 245

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N L++    K  F R  EL+  M          TY  +I G CK     EA  +  ++  
Sbjct: 246 NVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLG 305

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RG +P  V Y T+++ LC++G + DAR+    M+++ L+P+  +YN++I+GY R+ N  E
Sbjct: 306 RGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAE 365

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  L  E+  K    + VTYNTLI G C  G  D A  + ++M + G+  DV+T+  L++
Sbjct: 366 ALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVR 425

Query: 418 GYCKEGKI 425
           G+C+ G +
Sbjct: 426 GFCQMGNL 433



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 149/327 (45%), Gaps = 37/327 (11%)

Query: 104 PDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P +V+ N + DS  +     RA +V +D +   G  PN  S  + +  L   G  + A  
Sbjct: 205 PTIVTFNTMMDSRCKEGEVGRAVEV-LDVMRMFGCDPNDVSYNVLVNGLSGKGEFDRAKE 263

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
              ++  +G+  S  T+N                           LI+ FC      E  
Sbjct: 264 LIEQMSMLGLKVSAHTYNP--------------------------LIRGFCKKEMFEEAN 297

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL---LHTMVARNRAPDNFTYEEVI 276
           +L R++L  G +P    +N ++   C     GRVS+    L  MV  +  PD  +Y  +I
Sbjct: 298 DLRREMLGRGALPTVVTYNTIMYSLCR---LGRVSDARRYLDVMVNEDLMPDLVSYNTLI 354

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            G  +     EA  +F++L+ +  VP  V Y T+I G C+ G L  A+ M  +MI  GL 
Sbjct: 355 YGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLC 414

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  T+  ++ G+C++ NL  AK L  EML +G     + Y T I G    G   +A+ +
Sbjct: 415 PDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGM 474

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
            EEM  +G   D+ITYN LI G CK G
Sbjct: 475 KEEMKAEGFPPDLITYNVLINGLCKLG 501



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 154/370 (41%), Gaps = 47/370 (12%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  P+ VS NVL + L     F  A + ++     G   + ++    I+  C+  + EE
Sbjct: 236 FGCDPNDVSYNVLVNGLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEE 295

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK---------LYHDLIESGYLIQ 207
           A     ++   G   ++ T+N+ +    ++ R     +         L  DL+    LI 
Sbjct: 296 ANDLRREMLGRGALPTVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIY 355

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +   G  +E   L  ++    LVP    +N LI   C   N      +   M+     P
Sbjct: 356 GYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCP 415

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  ++ G C+      A  +F+++  RG  PD + YTT I G  K+G    A  M 
Sbjct: 416 DVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMK 475

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK------------------------ 363
            EM  +G  P+  TYN +I+G C++ N ++A  L +                        
Sbjct: 476 EEMKAEGFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLIS 535

Query: 364 -----------EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
                      +ML KG   + VTY  LI    + GR D A   F+EM  KG+  +VITY
Sbjct: 536 GLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITY 595

Query: 413 NTLIQGYCKE 422
           N LI G CKE
Sbjct: 596 NALIYGLCKE 605



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 68/294 (23%), Positives = 136/294 (46%), Gaps = 14/294 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V+ N L D         +A    D     G  P+  +  + ++  C+ G +  A   
Sbjct: 380 PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKEL 439

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F ++   G+      + + ++G +K+      + +           DLI    LI   C 
Sbjct: 440 FDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCK 499

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G   +  EL++++  +G+VP++  +  +I          +  E+   M+ +   P   T
Sbjct: 500 LGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVT 559

Query: 272 YEEVINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           Y  +I+     R RL+ A + F++++++G  P+ + Y  +I+GLCK   +  A  ++ EM
Sbjct: 560 YTVLIHSYA-VRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEM 618

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             KG+ PN+YTY  +I+    +   ++A +L+K+MLD+     + T++ L+  L
Sbjct: 619 ESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHL 672



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 29/219 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PDL++ NVL + L +   F  A + +      G  P+  +    I     SGL+ +A
Sbjct: 482 GFPPDLITYNVLINGLCKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKA 541

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              FS + + G+  S+ T+                            LI ++   G++  
Sbjct: 542 EEVFSDMLKKGIHPSVVTYT--------------------------VLIHSYAVRGRLDF 575

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +   ++ + G+ P    +N LI   C++        L   M ++  +P+ +TY  +IN
Sbjct: 576 AKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTYTILIN 635

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
                +   +A +++ D+ +R   PD+  ++ ++  L K
Sbjct: 636 ENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKHLSK 674


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 150/303 (49%), Gaps = 9/303 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ++G S   ++    +  LC+ G ++E      K+ + GV  ++ T+N  + G  +    D
Sbjct: 209 ASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELD 268

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              ++   LI+ G         YLI   C + K  E    L +++ +GL P++  +N LI
Sbjct: 269 AAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLI 328

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           + +C+         +L   V     PD FTY  +I+GLC   +   A  +FN+   +G  
Sbjct: 329 AGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIK 388

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+ ++Y T+I GL   G + +A ++  EM  KGL+P   T+N +++G C++  + +A  L
Sbjct: 389 PNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            K M+ KGY     T+N LI G     + + A  + + M   G+  DV TYN+L+ G CK
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCK 508

Query: 422 EGK 424
             K
Sbjct: 509 TSK 511



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/310 (29%), Positives = 155/310 (50%), Gaps = 12/310 (3%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MDF D     P   S    +  L +SG  ++A   + ++++ G+   + ++   +    +
Sbjct: 102 MDFYDC---EPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCR 158

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R     +L +++   G          ++  F  +    EGYEL  ++L  G+    + 
Sbjct: 159 TSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLST 218

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FNKL+   C+K +     +LL  ++ R   P+ FTY   I GLC+  +   A R+   L 
Sbjct: 219 FNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLI 278

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           ++G  PD V Y  +I+GLCK     +A     +++++GL P+ +TYN++I GYC+   ++
Sbjct: 279 DQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQ 338

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A+R+    +  G+     TY +LI GLC  G T+ A  LF E   KGI  +VI YNTLI
Sbjct: 339 LAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLI 398

Query: 417 QGYCKEGKIV 426
           +G   +G I+
Sbjct: 399 KGLSNQGLIL 408



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 156/372 (41%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S  L + N L   L +    K     LD     G  PN  +   +IQ LC+ G ++ A
Sbjct: 211 GVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAA 270

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +L + G    + T+N  + G  K  +          L+  G          LI  
Sbjct: 271 VRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAG 330

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G V     +L   + +G VP+   +  LI   C +    R   L +  + +   P+
Sbjct: 331 YCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPN 390

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I GL      LEA ++ +++ E+G +P+   +  +++GLCKMG + DA  +  
Sbjct: 391 VILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVK 450

Query: 329 EMIHKGLLPNEYTYNSMIHGY-----------------------------------CRID 353
            MI KG  P+ +T+N +IHGY                                   C+  
Sbjct: 451 VMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTS 510

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             E+    +K M++KG      T+N L+  LC + + D+A  L EEM  K +  D +T+ 
Sbjct: 511 KYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFG 570

Query: 414 TLIQGYCKEGKI 425
           TLI G+CK G +
Sbjct: 571 TLIDGFCKNGDL 582



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/363 (28%), Positives = 156/363 (42%), Gaps = 22/363 (6%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
           ++L+   +F   H  Y      G +PD+ S  +   S         A+  L++   S   
Sbjct: 119 SILVDSGYFDQAHKVYMRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNN--MSSQG 176

Query: 139 NSLELYIQCLCESGLIEEAFC-----AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
             + +   C    G  EE F       F K+   GV   + T+N  L    K        
Sbjct: 177 CEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECE 236

Query: 194 KLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           KL   +I+ G L         IQ  C  G++     ++ ++++ G  P+   +N LI   
Sbjct: 237 KLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGL 296

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+   F      L  +V     PD+FTY  +I G CK      A R+  +    G+VPD 
Sbjct: 297 CKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDE 356

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y ++I GLC  G    A  ++ E + KG+ PN   YN++I G      + EA +L  E
Sbjct: 357 FTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASE 416

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M +KG      T+N L+ GLC  G   +A  L + M  KG F D+ T+N LI GY  + K
Sbjct: 417 MSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLK 476

Query: 425 IVN 427
           + N
Sbjct: 477 MEN 479



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 165/365 (45%), Gaps = 17/365 (4%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           F +N   FF + L Q+  +  ++R    L    G  PD+V+ N L   L +   F+ A  
Sbjct: 252 FTYN---FFIQGLCQKGELDAAVRMVGRLIDQ-GPKPDVVTYNYLIYGLCKNSKFQEAEV 307

Query: 128 FLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
           +L    + G  P+  +    I   C+ G+++ A          G      T+ S + G  
Sbjct: 308 YLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLC 367

Query: 185 KIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
               T+    L+++ +  G          LI+   N G + E  +L  ++ E GL+PE  
Sbjct: 368 HEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQ 427

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            FN L++  C+         L+  M+++   PD FT+  +I+G     K   A  + + +
Sbjct: 428 TFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVM 487

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            + G  PD   Y ++++GLCK     D  + +  M+ KG  PN +T+N ++   CR   L
Sbjct: 488 MDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCRYHKL 547

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNT 414
           ++A  L +EM +K      VT+ TLI G C +G  D AY LF +M +  +      TYN 
Sbjct: 548 DKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYMVSCSTPTYNI 607

Query: 415 LIQGY 419
           +I  +
Sbjct: 608 IIHAF 612



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 152/338 (44%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  +   L D L        A+   +     G  PN       I+ L   GLI EA
Sbjct: 351 GFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEA 410

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               S++ E G+   ++T+N  + G  K+        L   +I  GY         LI  
Sbjct: 411 AQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHG 470

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +    K+    E+L  ++++G+ P+   +N L++  C+   +  V E   TMV +  AP+
Sbjct: 471 YSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPN 530

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT+  ++  LC+  K  +A  +  ++K +   PD V + T+I G CK G L  A  ++ 
Sbjct: 531 LFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYTLFR 590

Query: 329 EMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           +M    ++  +  TYN +IH +    N+  A++L +EM+D+  G    TY  ++ G C  
Sbjct: 591 KMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKT 650

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D  Y    EM + G    + T   +I   C E ++
Sbjct: 651 GNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRV 688



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/287 (22%), Positives = 134/287 (46%), Gaps = 10/287 (3%)

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +LE++     E G         S ++++G++G  +     L+        D+   + + +
Sbjct: 23  ALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLV--------DMRQNVGNHM 74

Query: 200 IESGYL--IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           +E  Y+  ++ +   GKV E   +  ++      P   ++N ++S   +   F +  ++ 
Sbjct: 75  LEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVY 134

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD +++   +   C++ +   A R+ N++  +G   + V Y TV+ G  + 
Sbjct: 135 MRMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEE 194

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
            +  +  +++ +M+  G+     T+N ++H  C+  +++E ++L  +++ +G      TY
Sbjct: 195 NFKDEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTY 254

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           N  I GLC  G  D A  +   +  +G   DV+TYN LI G CK  K
Sbjct: 255 NFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSK 301



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 50/203 (24%), Positives = 83/203 (40%), Gaps = 7/203 (3%)

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR- 285
           EDG     + +  +I +      +G+   +   +V   +   N   E V  G  K+  R 
Sbjct: 33  EDGFKHTLSTYRSIIEKL---GLYGKFEAMEEVLVDMRQNVGNHMLEGVYVGAMKNYGRK 89

Query: 286 ---LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               EA  VF  +      P    Y  ++  L   G+   A K++  M  +G+ P+ Y++
Sbjct: 90  GKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSF 149

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
              +  +CR      A RL   M  +G     V Y T++ G       DE Y LF +M  
Sbjct: 150 TIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLA 209

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
            G+   + T+N L+   CK+G +
Sbjct: 210 SGVSLCLSTFNKLLHVLCKKGDV 232


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 158/349 (45%), Gaps = 15/349 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCL 148
           F     SH    P   S N L   LV A+   +A     S      SP+  +    I  L
Sbjct: 142 FLLAGESHPRHRPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGL 201

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDL--VWKLYHDLIESG-- 203
           C  G + +A      +K  G+  S+ T+NS + G C K    ++  V  L  +++E+G  
Sbjct: 202 CRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGIS 261

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI  +C +   +    +  ++ + G+      +N LIS  C +       +L
Sbjct: 262 PTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKL 321

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M     +P+  T+  V+ G CK     +A    + + ER   PD V+Y  +I    +
Sbjct: 322 MEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRR 381

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G + DA  +   M  KG+ PN  TYN +I G+ R  +   A  L  EM +KG     VT
Sbjct: 382 LGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVT 441

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           YN LI  LC  G   +A  L +EM++ G+  + +TYNT+IQG+C +G I
Sbjct: 442 YNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNI 490



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/199 (31%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P  ++ N L++     K      +   + + R  +PD +T+  VI+GLC+  +  +A  V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGD---ARKMWFEMIHKGLLPNEYTYNSMIHG 348
             D+K  G  P    Y ++I G CK G  G+      +  EM+  G+ P   T+  +I+G
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC+  N   A R+ +EM  +G   + VTYN+LI+GLC  G+ +E   L EEM   G+  +
Sbjct: 274 YCKNSNTAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPN 333

Query: 409 VITYNTLIQGYCKEGKIVN 427
            IT+  +++G+CK+G + +
Sbjct: 334 EITFGCVLKGFCKKGMMAD 352



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 155/342 (45%), Gaps = 21/342 (6%)

Query: 100 YGFSPDLVSCNVLFDSLVE----ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGL 153
           +G +P + + N L D   +       + V M    +   G SP   +  + I   C++  
Sbjct: 220 WGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSN 279

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGY 204
              A   F ++K+ G+  S+ T+NS + G     + +   KL  ++         I  G 
Sbjct: 280 TAAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGC 339

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMV 261
           +++ FC  G +++  + +  + E  + P+   +N LI  +   +  G++ + +     M 
Sbjct: 340 VLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVY---RRLGKMEDAMAVKEAMA 396

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            +  +P+  TY  +I G  +S     A  + +++KE+G   D V Y  +I  LC  G + 
Sbjct: 397 KKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVR 456

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A K+  EM   GL PN  TYN++I G+C   N++ A  +   M         VTYN  I
Sbjct: 457 KAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFI 516

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              C  G+ DEA  L  EM  K +  + ITY T+ +G  ++G
Sbjct: 517 KYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 94/227 (41%), Gaps = 35/227 (15%)

Query: 104 PDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           PD+V  N+L D       + +A A K AM      G SPN  +    I     SG    A
Sbjct: 367 PDVVIYNILIDVYRRLGKMEDAMAVKEAMA---KKGISPNVTTYNCLITGFSRSGDWRSA 423

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++KE G+   + T+N                           LI A C  G+V +
Sbjct: 424 SGLLDEMKEKGIEADVVTYN--------------------------VLIGALCCKGEVRK 457

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL ++ E GL P +  +N +I  FC+K N     E+   M    +  +  TY   I 
Sbjct: 458 AVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIK 517

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             C+  K  EA  + N++ ++  VP+ + Y T+  G+ + G+  D R
Sbjct: 518 YFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKGYTPDIR 564


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 77/221 (34%), Positives = 112/221 (50%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI A+C+ G +      L  +L  GL P++ A+   +  +C    F     L   M  R 
Sbjct: 80  LINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRG 139

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            A   FTY  ++ GLC +    EA  VF  +   G  PD+ +Y+ ++HGLC  G  G+A 
Sbjct: 140 CARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAV 199

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  + + KG +PN   YN++I GYC   +LE A  + K M  KG      TY  LI G 
Sbjct: 200 ALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGF 259

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G+ + A  L+  M + G+  +V+TY TLIQG C EG +
Sbjct: 260 CKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHL 300



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 142/302 (47%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+ +   + +  LC +G   EA    +     G   ++  +N+ + G       +L 
Sbjct: 174 GCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELA 233

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             ++  +   G          LI  FC  GKV     L  +++E GL P    +  LI  
Sbjct: 234 IDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQG 293

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C + +      LLH+M A   AP+ +T   +I+ LCK  +  EA +    L ++G   +
Sbjct: 294 QCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVN 353

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V+YT++I  LCK G    A  +  ++I +G +P+ + Y+S+I G CR + L EA  L  
Sbjct: 354 QVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLN 413

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M++ G     V +  LI       R+D    + + MA  G+  DV+TY   I+ YC++G
Sbjct: 414 DMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDG 473

Query: 424 KI 425
           ++
Sbjct: 474 RM 475



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 143/315 (45%), Gaps = 9/315 (2%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           A K  +  L   G +P+ ++   ++   C +GL   A   F  + + G   +  T+ + L
Sbjct: 92  AAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALL 151

Query: 181 LGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G            ++  +   G          ++   C  G+  E   LL   +  G V
Sbjct: 152 QGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFV 211

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    +N LI  +C   +     ++   M ++   P+  TY ++I G CKS K   A  +
Sbjct: 212 PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVL 271

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           ++ + E G  P+ V YTT+I G C  G L  A ++   M   GL PNE+T   +I   C+
Sbjct: 272 YSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCK 331

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +EEA++    ++ KG     V Y ++I  LC  G+ D A++L +++  +G   D   
Sbjct: 332 HGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHM 391

Query: 412 YNTLIQGYCKEGKIV 426
           Y++LI G C+E K++
Sbjct: 392 YSSLIDGLCRENKLL 406



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 148/337 (43%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEA-RAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEA 157
           G +PD    +++   L  A RA +      D+ G  F PN       I   C +G +E A
Sbjct: 174 GCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELA 233

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  ++  G   +++T+   + G  K  + +    LY  +IE+G          LIQ 
Sbjct: 234 IDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVLYSRMIEAGLAPNVVTYTTLIQG 293

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C++G +   + LL  +   GL P       LI   C+        + L ++V +    +
Sbjct: 294 QCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGRIEEAQQFLGSLVQKGIKVN 353

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+ LCKS K   A+ +   +   G+VPD  MY+++I GLC+   L +A  +  
Sbjct: 354 QVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLIDGLCRENKLLEAISLLN 413

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +MI  G+  N   +  +I  + R    +  K +   M   G     VTY   I   C  G
Sbjct: 414 DMIESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDG 473

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R ++A  +  +M   G+  ++ TYNTLI+GY   G +
Sbjct: 474 RMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLV 510



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/329 (25%), Positives = 147/329 (44%), Gaps = 14/329 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++   N L D        ++A+D    + S G  PN  +    I   C+SG +E A
Sbjct: 209 GFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERA 268

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              +S++ E G+  ++ T+ + + G       +  ++L H +   G          LI A
Sbjct: 269 MVLYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDA 328

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++ E  + L  +++ G+      +  +I   C+   F     L+  ++     PD
Sbjct: 329 LCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPD 388

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLC+  K LEA  + ND+ E G   + V +T +I    +  +  D+ KM  
Sbjct: 389 AHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLR-EFRSDSPKMIS 447

Query: 329 E-MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           + M   G+ P+  TY   I  YC+   +E+A+ +  +M+D G      TYNTLI G    
Sbjct: 448 DRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANL 507

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           G   +A+   + M   G   +  +Y  L+
Sbjct: 508 GLVSQAFSSLKNMIDNGCKPNDESYTVLL 536



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 89/189 (47%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +  LI+ +C   +       L +++    APD+  Y   + G C++     A R+F  + 
Sbjct: 77  YTTLINAYCHAGDLPAAKRHLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMP 136

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           +RG       Y  ++ GLC  G + +A  ++  M   G  P+ + Y+ M+HG C      
Sbjct: 137 QRGCARTPFTYAALLQGLCGAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAG 196

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  L  + + KG+      YN LI G C  G  + A  +F+ M  KG   +V TY  LI
Sbjct: 197 EAVALLTDAMGKGFVPNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLI 256

Query: 417 QGYCKEGKI 425
            G+CK GK+
Sbjct: 257 CGFCKSGKV 265



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 4/195 (2%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           VP     N L+           +  L   M  RN      TY  +IN  C +     A R
Sbjct: 40  VPPIRCLNTLLMALARHGMLSDMESLAARMPVRNL----HTYTTLINAYCHAGDLPAAKR 95

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
             + L   G  PD+  YT+ + G C+ G    A +++  M  +G     +TY +++ G C
Sbjct: 96  HLSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLC 155

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
               + EA  +   M   G    +  Y+ ++ GLC  GR  EA  L  +   KG   +V 
Sbjct: 156 GAGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVA 215

Query: 411 TYNTLIQGYCKEGKI 425
            YN LI GYC  G +
Sbjct: 216 VYNALIDGYCSTGDL 230



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/393 (20%), Positives = 161/393 (40%), Gaps = 52/393 (13%)

Query: 34  KESQQLYTEIAKQVCKITR--TKPRWEQTLLSD--IPSFNFNDPLFFREFLKQQNNVLLS 89
           K +Q +YT +   +CK  +        Q ++++  +P  +    L   + L ++N +L +
Sbjct: 351 KVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGFVPDAHMYSSLI--DGLCRENKLLEA 408

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDS-LVEARA--FKVAMDFLDSTGFSPNPNSLELYIQ 146
           I     +    G   + V   +L D  L E R+   K+  D + + G  P+  +  ++I+
Sbjct: 409 ISLLNDM-IESGVQANAVPFTILIDKHLREFRSDSPKMISDRMAAAGVKPDVVTYTVFIR 467

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
             C+ G +E+A     ++ + GV  ++ T+N+                          LI
Sbjct: 468 SYCQDGRMEDAESMMIQMIDHGVRPNLTTYNT--------------------------LI 501

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV------------- 253
           + + N G VS+ +  L+ ++++G  P + ++  L+    +K ++  +             
Sbjct: 502 KGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDM 561

Query: 254 ---SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               ELL  ++    +  ++ Y+  I  L K  +  EA      ++     P   +YT +
Sbjct: 562 KVLEELLEEVIKLQCSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCM 621

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I    +M  L +A +    M+ +  LP   +Y  +I   C   +   AK +  ++L K Y
Sbjct: 622 IECCYRMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEY 681

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
               + +  LI GL   G T +   L   M ++
Sbjct: 682 NRDEIAWKILIDGLLQKGNTADCSRLLSFMEEQ 714


>gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g13630-like [Cucumis sativus]
          Length = 830

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 36/367 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK----VAMDFLDSTGFSPNPNSLEL 143
           +++ FF +L + YGF   + S  V+   L     FK    V  + +   G        +L
Sbjct: 99  VAVAFFYFLINEYGFRHSIFSQFVVSHILAGKGRFKELDSVIKNLIVDQGLGSASIICDL 158

Query: 144 YIQ-----------------CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
            ++                       +I +A    +K+K++    S+ T+NS L     +
Sbjct: 159 LLEKFRNWDSNGLVWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLH---NM 215

Query: 187 DRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV-PENTA 236
             TD++W +Y+++  SG          LI   C   K+ +    L     + +V P   +
Sbjct: 216 RHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD--SNKVVGPSIVS 273

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            N ++S+FC+             MV      D+F+Y  +++GLC +    EA    +D++
Sbjct: 274 INTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDME 333

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           + G  PD V Y T+  G   +G +  ARK+  +M+ +GL P+  TY ++I G+C++ N+E
Sbjct: 334 KHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIE 393

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA +L +E L +G+    + YN L++ LC  GR +EA  LF+EM    +  D I Y+ LI
Sbjct: 394 EALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILI 453

Query: 417 QGYCKEG 423
            G CKEG
Sbjct: 454 HGLCKEG 460



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 143/328 (43%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +PDLV+   L     +    + A+     T   GF  N     + + CLC+ G IEEA
Sbjct: 371 GLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEA 430

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++ +                          +L  D I    LI   C +G V  
Sbjct: 431 LTLFDEMETL--------------------------RLEPDFIVYSILIHGLCKEGFVQR 464

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            Y+L  Q+      P + A   ++    +  N         T    +   D   Y  +I+
Sbjct: 465 AYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMID 524

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  +     EA +++  + ERG  P  V + T+I+G C+ G L +ARKM   +  KGL+P
Sbjct: 525 GYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVP 584

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY ++++ YC + N++E      EM       T VTY  LI GLC   +  E+  L 
Sbjct: 585 SVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLL 644

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E M  KG+  D +TYNT+IQ +CK  +I
Sbjct: 645 EYMYAKGLLPDSVTYNTIIQCFCKGKEI 672



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 162/349 (46%), Gaps = 19/349 (5%)

Query: 93  FQWLH-SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
             +LH S+    P +VS N +     +     VA  F   +   G   +  S  + +  L
Sbjct: 257 ISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLHDSFSYNILLHGL 316

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSA-----LLGCI----KIDRTDLVWKLYHDL 199
           C +G ++EA      +++ GV   + T+N+      LLG +    K+ +  L+  L  DL
Sbjct: 317 CVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDL 376

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---L 256
           +    LI   C  G + E  +L ++ L  G       +N L+S  C+    GR+ E   L
Sbjct: 377 VTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCK---VGRIEEALTL 433

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M      PD   Y  +I+GLCK      AY+++  ++ +   P       V+ GL K
Sbjct: 434 FDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFK 493

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +AR  +       L+ +   YN MI GY R+D + EA +L+ +M+++G   + VT
Sbjct: 494 NGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVT 553

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +NTLI G C  G   EA  + E +  KG+   V+TY TL+  YC+ G +
Sbjct: 554 FNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNM 602



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 133/287 (46%), Gaps = 9/287 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           L ++G I EA   F     M +   +  +N  + G +++D      +LY+ +IE G    
Sbjct: 491 LFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPS 550

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  FC  G + E  ++L  +   GLVP    +  L++ +CE  N   +   LH
Sbjct: 551 VVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLH 610

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M A    P + TY  +I GLC+  K  E+ ++   +  +G +PD+V Y T+I   CK  
Sbjct: 611 EMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGK 670

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A +++  M+     P + TY  +I+  C   +L++  R+   + D+      VTY 
Sbjct: 671 EITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYM 730

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T+I   C  G+  +A   F +M  KG    +  Y+ +I   CK G I
Sbjct: 731 TIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLI 777



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 153/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  +++  N+L   L +    + A+   D   +    P+     + I  LC+ G ++ A
Sbjct: 406 GFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRA 465

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV------WK---LYHDLIESGYLIQA 208
           +  + +++    F       + LLG  K             W    L  D++    +I  
Sbjct: 466 YQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDG 525

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +     ++E  +L  +++E G+ P    FN LI+ FC + +     ++L  +  +   P 
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPS 585

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++N  C+     E +   ++++    VP  V YT +I GLC+   + ++ ++  
Sbjct: 586 VVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLE 645

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KGLLP+  TYN++I  +C+   + +A +L+  ML      T VTY  LI  LC+ G
Sbjct: 646 YMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFG 705

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +   +   +  + I    +TY T+I+ +C +G++
Sbjct: 706 DLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQV 742



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 11/330 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           + ++L   L E    + A+ FL  +     P+  S+   +   C+ GLI+ A   F  + 
Sbjct: 239 TTSILIHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMV 298

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVS 216
           + G+     ++N  L G       D       D+ + G          L + F   G +S
Sbjct: 299 KNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMS 358

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
              ++++++L  GL P+   +  LI   C+  N     +L    ++R    +   Y  ++
Sbjct: 359 GARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLL 418

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           + LCK  +  EA  +F++++     PD ++Y+ +IHGLCK G++  A +++ +M  K   
Sbjct: 419 SCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF 478

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+ +   +++ G  +  N+ EA+            E  V YN +I G        EA  L
Sbjct: 479 PHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQL 538

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + +M ++GI   V+T+NTLI G+C+ G ++
Sbjct: 539 YYKMIERGITPSVVTFNTLINGFCRRGDLM 568



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 128/281 (45%), Gaps = 13/281 (4%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-----------LYHDLIES 202
           I EA   + K+ E G+  S+ T+N+ + G  +  R DL+             L   ++  
Sbjct: 532 IAEAMQLYYKMIERGITPSVVTFNTLINGFCR--RGDLMEARKMLEVIRLKGLVPSVVTY 589

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             L+ A+C  G + E +  L ++  + +VP +  +  LI   C +       +LL  M A
Sbjct: 590 TTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYA 649

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   PD+ TY  +I   CK ++  +A +++N +      P  V Y  +I+ LC  G L D
Sbjct: 650 KGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKD 709

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
             +M   +  + +   + TY ++I  +C    + +A     +ML KG+  +   Y+ +I 
Sbjct: 710 VDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVIN 769

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            LC  G   EA + F  M  +G+  D     T++  + ++G
Sbjct: 770 RLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQG 810



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/312 (21%), Positives = 129/312 (41%), Gaps = 12/312 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V  N++ D  V       AM     +   G +P+  +    I   C  G + EA    
Sbjct: 515 DVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKML 574

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCND 212
             ++  G+  S+ T+ + +    ++     ++   H++         +    LI+  C  
Sbjct: 575 EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            K+ E  +LL  +   GL+P++  +N +I  FC+ K   +  +L + M+  N  P   TY
Sbjct: 635 NKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTY 694

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
           + +IN LC      +  R+   +++R      V Y T+I   C  G +  A   + +M+ 
Sbjct: 695 KVLINALCIFGDLKDVDRMVVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLA 754

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KG + +   Y+++I+  C+   + EAK     ML +G         T++      G    
Sbjct: 755 KGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSS 814

Query: 393 AYHLFEEMAQKG 404
            +     + + G
Sbjct: 815 VFEFLAMVVKSG 826


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 146/302 (48%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G   N  +  + I  LC SG +EEAF     +++ G+     T+ + + G  K  R++  
Sbjct: 252 GCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEA 311

Query: 193 WKLYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L  ++         +    LI  F  +G   E ++++++++  G+ P    ++ L+  
Sbjct: 312 KALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRG 371

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C+     R S LL  MV  +  PD  TY  +I G  +   + +A+R+ ++++  G  P+
Sbjct: 372 LCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 431

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y+ +IHGLC+ G    A  +  EM  KGL PN + Y  +I GYCR  N+  A  +  
Sbjct: 432 VYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD 491

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M           YN+LI GL   GR +E+   F +M ++G+  +  TY+ LI GY K G
Sbjct: 492 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNG 551

Query: 424 KI 425
            +
Sbjct: 552 DL 553



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 171/372 (45%), Gaps = 48/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++ + +++   L ++   + A D L+   + G  PN       I   C  G +  A
Sbjct: 427 GISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLA 486

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F K+ ++ V   +  +NS + G  K+ R +   K +  + E G L         I  
Sbjct: 487 CEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHG 546

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----- 263
           +  +G +    +L++++L+ GL P +  +  L+  + +  +  +VS    +M+ +     
Sbjct: 547 YLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLD 606

Query: 264 NR------------------------------APDNFTYEEVINGLCKSRKRLEAYRVFN 293
           NR                               PD   Y  +I+GLCK+  R +A+ + +
Sbjct: 607 NRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILD 666

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ ++G  P+ V Y  +I GLCK G +  AR ++  ++ KGL+PN  TY S+I G C++ 
Sbjct: 667 EMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVG 726

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           ++  A  L+ EML  G       Y+ L  G    G  ++A  L EEM  +G    + ++N
Sbjct: 727 DISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HASISSFN 785

Query: 414 TLIQGYCKEGKI 425
            L+ G+CK GK+
Sbjct: 786 NLVDGFCKRGKM 797



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 141/310 (45%), Gaps = 10/310 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AFK+  + + + G  PN  + +  ++ LC+ G ++ A     ++          T+N  +
Sbjct: 346 AFKMIKEMV-AAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLII 404

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  +       ++L  ++  +G          +I   C  G+  +  +LL ++   GL 
Sbjct: 405 EGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLK 464

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    +  LIS +C + N     E+   M   N  PD + Y  +I GL K  +  E+ + 
Sbjct: 465 PNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKY 524

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F  ++ERG +P+   Y+ +IHG  K G L  A ++   M+  GL PN+  Y  ++  Y +
Sbjct: 525 FAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFK 584

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D++E+     K MLD+G       Y  LI  L   G  + A+ +   + + G   DV  
Sbjct: 585 SDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHV 644

Query: 412 YNTLIQGYCK 421
           Y++LI G CK
Sbjct: 645 YSSLISGLCK 654



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 149/338 (44%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEE 156
           YG  PD  +   L + L ++R    A   LD        PN       I      G  +E
Sbjct: 286 YGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADE 345

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKI---DRTDLVWKLY------HDLIESGYLIQ 207
           AF    ++   GV  +  T+++ + G  K+   DR  L+ K         D I    +I+
Sbjct: 346 AFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIE 405

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                    + + LL ++   G+ P    ++ +I   C+     + S+LL  M  +   P
Sbjct: 406 GHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKP 465

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + F Y  +I+G C+      A  +F+ + +   +PD   Y ++I GL K+G + ++ K +
Sbjct: 466 NAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYF 525

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M  +GLLPNE+TY+ +IHGY +  +LE A++L + MLD G     V Y  L+      
Sbjct: 526 AQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKS 585

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              ++    F+ M  +G+  D   Y  LI      G +
Sbjct: 586 DDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNM 623



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 153/336 (45%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++ N++ +      + K A   L   ++ G SPN  +  + I  LC+SG  E+A   
Sbjct: 395 PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDL 454

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND-------- 212
             ++   G+  +   +   + G  +     L  +++  + +   L   +C +        
Sbjct: 455 LEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSK 514

Query: 213 -GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V E  +   Q+ E GL+P    ++ LI  + +  +     +L+  M+     P++  
Sbjct: 515 VGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVI 574

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y +++    KS    +    F  + ++G + D  +Y  +IH L   G +  A ++   + 
Sbjct: 575 YIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIE 634

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G +P+ + Y+S+I G C+  + E+A  +  EM  KG     V YN LI GLC  G   
Sbjct: 635 KNGSVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDIS 694

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            A ++F  +  KG+  + +TY +LI G CK G I N
Sbjct: 695 YARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISN 730



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 94/176 (53%)

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+ + F    ++L  M  R    +  TY  +I GLC+S    EA+    D+++ G VPD
Sbjct: 232 YCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPD 291

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y  +I+GLCK     +A+ +  EM    L PN   Y ++I G+ R  N +EA ++ K
Sbjct: 292 GFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIK 351

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           EM+  G     +TY+ L+ GLC  G+ D A  L ++M +     D ITYN +I+G+
Sbjct: 352 EMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH 407



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/408 (21%), Positives = 171/408 (41%), Gaps = 65/408 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           ++ NV L+   F  + +     PDL   N L   L +    + +  +   +   G  PN 
Sbjct: 479 REGNVSLACEIFDKM-TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNE 537

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I    ++G +E A     ++ + G+  +   +   L    K D  + V   +  
Sbjct: 538 FTYSGLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKS 597

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +++ G          LI    + G +   + +L  + ++G VP+   ++ LIS  C+  +
Sbjct: 598 MLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTAD 657

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             +   +L  M  +   P+   Y  +I+GLCKS     A  VFN +  +G VP+ V YT+
Sbjct: 658 REKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTS 717

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY--------------------------- 342
           +I G CK+G + +A  ++ EM+  G+ P+ + Y                           
Sbjct: 718 LIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG 777

Query: 343 -------NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
                  N+++ G+C+   ++E  +L   ++ +G     +T   +I+GL   G+  E + 
Sbjct: 778 HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHT 837

Query: 396 LFEEMAQK----------GIFRDVI--------TYNTLIQGYCKEGKI 425
           +F E+ QK           +F D+I          + +I+ +CKEG +
Sbjct: 838 IFVELQQKTSESAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNL 885



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 82/154 (53%)

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +   +   CK R+   A +V  +++ERG   +TV Y  +I GLC+ G + +A     +M 
Sbjct: 225 HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDME 284

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GL+P+ +TY ++I+G C+     EAK L  EM         V Y  LI G    G  D
Sbjct: 285 DYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNAD 344

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA+ + +EM   G+  + ITY+ L++G CK G++
Sbjct: 345 EAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQM 378



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/338 (22%), Positives = 151/338 (44%), Gaps = 33/338 (9%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFS 135
           L    N+  + R    +  + G  PD+   + L   L +     +AF + +D +   G  
Sbjct: 617 LSSSGNMEAAFRVLSGIEKN-GSVPDVHVYSSLISGLCKTADREKAFGI-LDEMSKKGVD 674

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN       I  LC+SG I  A   F+ +   G+  +  T+ S + G  K+      + L
Sbjct: 675 PNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYL 734

Query: 196 YHDLIESGYLIQAFC---------NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           Y++++ +G    AF          + G + +   L+ ++   G     ++FN L+  FC+
Sbjct: 735 YNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHA-SISSFNNLVDGFCK 793

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +       +LLH ++ R   P+  T E +I+GL ++ K  E + +F +L+++        
Sbjct: 794 RGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARH 853

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +++                ++ +MI++G +P +   + MI  +C+  NL++A  L   ++
Sbjct: 854 FSS----------------LFMDMINQGKIPLD-VVDDMIRDHCKEGNLDKALMLRDVIV 896

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
            K       +Y  ++  LC  G+  EA +L +EM ++G
Sbjct: 897 AKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRG 934



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 53/273 (19%), Positives = 94/273 (34%), Gaps = 64/273 (23%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G  P++V  N L D L ++     A +  +S    G  PN  +    I   C+ G I
Sbjct: 669 SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDI 728

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LI 206
             AF  ++++   G+      ++    GC      +    L  ++   G+        L+
Sbjct: 729 SNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGHASISSFNNLV 788

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV------------- 253
             FC  GK+ E  +LL  ++  GLVP       +IS   E      V             
Sbjct: 789 DGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSE 848

Query: 254 ------SELLHTMVARNRAPDNF----------------------------------TYE 273
                 S L   M+ + + P +                                   +Y 
Sbjct: 849 SAARHFSSLFMDMINQGKIPLDVVDDMIRDHCKEGNLDKALMLRDVIVAKSAPMGCSSYL 908

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            +++ LC+  K  EA  +  ++ +RG +  T++
Sbjct: 909 AIVDNLCRKGKLSEALNLLKEMDKRGNLQPTLV 941


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+    N+L   ++ +     A +  D     G  P   +    +  +C++  +  A
Sbjct: 237 GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA 296

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + G+   + T+ + + G  K  R     +++ ++ E G          LI A
Sbjct: 297 NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 356

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V+ G EL  ++   G+  +  A+N L++ FC  ++    ++++  M      PD
Sbjct: 357 HCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPD 416

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  +   A  +  ++ + G   D V YT +I GL K G   DA ++  
Sbjct: 417 KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILC 476

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  GL P+  TY  +I  +C+  +++   +  KEM +KG     VTYN ++ G C  G
Sbjct: 477 EMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLG 536

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +   A  L   M   G+  + ITYN L+ G+CK GK+
Sbjct: 537 QMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKV 573



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 185/433 (42%), Gaps = 26/433 (6%)

Query: 11  ILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNF 70
           + R  P +F      + +L I  + S      +   V ++ R  P     LL    S + 
Sbjct: 118 LFRHTPASF----LSMSHLLIAHRLSHLALPLLRLLVSRLGRDSPPRLLPLLVSAASTDD 173

Query: 71  NDPL-------FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK 123
             PL       +  E L      LL +   + +        DL++      S+ EA AF 
Sbjct: 174 PAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPAWSDLMN---RLPSVPEAYAFY 230

Query: 124 VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
             +  LD+ G  P      + ++ +  SG +  A   F ++   GV  ++ T+N+ + G 
Sbjct: 231 --LHLLDA-GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGM 287

Query: 184 IKIDRTD-------LVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            K    +       L+ K  +  D+   G  IQ  C  G++ +  E+  ++ E GL P  
Sbjct: 288 CKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNT 347

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
                LI   C++ +     EL   M  R    D   Y  ++NG C+ R    A  +  +
Sbjct: 348 VVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEE 407

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +++ G  PD V YTT+I G CK G L  A +M  EM  +G+  ++ TY ++I G  +   
Sbjct: 408 MRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGR 467

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
             +A+R+  EM++ G      TY  +I   C +G     +   +EM  KG    ++TYN 
Sbjct: 468 SVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNV 527

Query: 415 LIQGYCKEGKIVN 427
           ++ G+C  G++ N
Sbjct: 528 VMNGFCSLGQMKN 540



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 157/334 (47%), Gaps = 15/334 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L   + +A     A      +   G +P+  +   +IQ LC++G I++A
Sbjct: 272 GVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDA 331

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRT---DLVWKLY-----HDLIESGYLIQA 208
              F ++ E G+  +     + +   C + D T   +L W++       DL+    L+  
Sbjct: 332 MEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNG 391

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +    +++ ++ +DGL P+   +  LI   C++       E+   M     A D
Sbjct: 392 FCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 451

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GL K+ + ++A R+  ++ E G  PD   YT VI   CK G +    K   
Sbjct: 452 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 511

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM +KG  P   TYN +++G+C +  ++ A  L   ML+ G     +TYN L+ G C HG
Sbjct: 512 EMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHG 571

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +  +   L    + KG+  D   Y +LI  + K+
Sbjct: 572 KVRDTEEL---KSAKGMVSDFGVYTSLINEFVKK 602



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 17/237 (7%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
            +W  +  G   DLV+ N L +     R  K A D ++     G  P+  +    I   C
Sbjct: 369 LRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCC 428

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           + G ++ A     ++ + GV     T+ + + G  K  R+    ++  +++E+G      
Sbjct: 429 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 488

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I AFC +G V  G++ L+++   G  P    +N +++ FC          LL+ M
Sbjct: 489 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 548

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCK 316
           +     P++ TY  +++G CK  K     R   +LK  +G V D  +YT++I+   K
Sbjct: 549 LNIGVCPNDITYNILLDGHCKHGK----VRDTEELKSAKGMVSDFGVYTSLINEFVK 601


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 151/334 (45%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P     N +  SLV+ + F  A+     LD  G + +  +L + I C C  G I  +F  
Sbjct: 67  PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSV 126

Query: 161 FSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
            + + + G    + T  + + G          +K     +  +   D I  G LI   C 
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCK 186

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+     +L+R + E  + P+   +N +I   C+ K  G    L   M A+   P+  T
Sbjct: 187 IGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVT 246

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I G C     +EA  + N++K +   PD   ++ +I  L K G +  A+ +   M+
Sbjct: 247 YTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMM 306

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              + P+  TYNS++ GY  ++ ++ AK +   M   G      +Y  +I GLC     D
Sbjct: 307 KAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVD 366

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  LFEEM  K +  + IT+N+LI G CK G+I
Sbjct: 367 EAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRI 400



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 161/335 (48%), Gaps = 14/335 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           F  D +S   L + L +    K A+     L+     P+     + I  LC++ L+ EA 
Sbjct: 170 FQLDRISYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEAC 229

Query: 159 CAFSKLKEMGVFGSIKTWNS-----ALLGCIKIDRTDLV--WKLYH---DLIESGYLIQA 208
             +S++    ++ ++ T+ +      ++GC+ I+   L+   KL +   D+     LI A
Sbjct: 230 NLYSEMNAKQIYPNVVTYTTLIYGFCIMGCL-IEAVALLNEMKLKNINPDVYTFSILIDA 288

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK+     +L  +++  + P+   +N L+  +           + ++M      P 
Sbjct: 289 LGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPG 348

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I+GLCK++   EA  +F ++K +  +P+T+ + ++I GLCK G +     +  
Sbjct: 349 VQSYTIMIDGLCKTKMVDEAISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVD 408

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +  L +  TY+S+I   C+  +L++A  L K+M+ +       TY  LI GLC  G
Sbjct: 409 KMRDRSQLADVITYSSLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGG 468

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R   A  +F+ +  KG   D+ TY  +I G+CK G
Sbjct: 469 RLKIAQEVFQHLLIKGYHLDIRTYTVMISGFCKAG 503



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 153/343 (44%), Gaps = 24/343 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+++   L   L      K A+ F D   +  F  +  S    I  LC+ G  + A
Sbjct: 134 GYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCKIGETKAA 193

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKID---RTDLVW------------KLYHDLIES 202
                 L+E  +   +  +N      I ID   +  LV             ++Y +++  
Sbjct: 194 IQLMRNLEERSIKPDVVMYN------IIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTY 247

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI  FC  G + E   LL ++    + P+   F+ LI    ++        +L  M+ 
Sbjct: 248 TTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMK 307

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  TY  +++G     +   A  VFN + + G  P    YT +I GLCK   + +
Sbjct: 308 AYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDE 367

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++ EM HK ++PN  T+NS+I G C+   +     L  +M D+      +TY++LI 
Sbjct: 368 AISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLID 427

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LC +   D+A  LF++M  + I  D+ TY  LI G CK G++
Sbjct: 428 ALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRL 470



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 153/334 (45%), Gaps = 24/334 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
              PD+V  N++ DSL + +    A +    +++    PN  +    I   C  G + EA
Sbjct: 204 SIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEA 263

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS- 216
               +++K   +   + T++      I ID      K+    I    +++A+     V+ 
Sbjct: 264 VALLNEMKLKNINPDVYTFS------ILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTY 317

Query: 217 ----EGYELLRQV----------LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
               +GY L+ +V           + G+ P   ++  +I   C+ K       L   M  
Sbjct: 318 NSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKH 377

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +N  P+  T+  +I+GLCKS +    + + + +++R  + D + Y+++I  LCK   L  
Sbjct: 378 KNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLDQ 437

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++ +MI + + P+ YTY  +I G C+   L+ A+ + + +L KGY     TY  +I+
Sbjct: 438 AIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMIS 497

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           G C  G  DEA  L  +M   G   + IT++ +I
Sbjct: 498 GFCKAGLFDEALALLSKMEDNGCIPNAITFDIII 531



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 133/300 (44%), Gaps = 12/300 (4%)

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           L+EA A    M        +P+  +  + I  L + G ++ A    + + +  V   + T
Sbjct: 260 LIEAVALLNEMKL---KNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVT 316

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVL 226
           +NS + G   ++       +++ + +SG          +I   C    V E   L  ++ 
Sbjct: 317 YNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMK 376

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
              ++P    FN LI   C+      V +L+  M  R++  D  TY  +I+ LCK+    
Sbjct: 377 HKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCKNCHLD 436

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  +F  +  +   PD   YT +I GLCK G L  A++++  ++ KG   +  TY  MI
Sbjct: 437 QAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTVMI 496

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G+C+    +EA  L  +M D G     +T++ +I  L      D+A  L  EM  +G+ 
Sbjct: 497 SGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARGLL 556



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 95/195 (48%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FN ++S   + + F     L   +  +    D  T   +IN  C   +   ++ V
Sbjct: 67  PPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFCHLGQITLSFSV 126

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + +RGY PD +  TT+I GLC  G +  A K   +++      +  +Y ++I+G C+
Sbjct: 127 LATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRISYGTLINGLCK 186

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           I   + A +L + + ++      V YN +I  LC +    EA +L+ EM  K I+ +V+T
Sbjct: 187 IGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCKNKLVGEACNLYSEMNAKQIYPNVVT 246

Query: 412 YNTLIQGYCKEGKIV 426
           Y TLI G+C  G ++
Sbjct: 247 YTTLIYGFCIMGCLI 261



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 12/245 (4%)

Query: 104 PDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D    + E +  K   + +  +G +P   S  + I  LC++ +++EA   
Sbjct: 312 PDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISL 371

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F ++K   V  +  T+NS + G  K  R   VW L           D+I    LI A C 
Sbjct: 372 FEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDALCK 431

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +  + +   L ++++   + P+   +  LI   C+        E+   ++ +    D  T
Sbjct: 432 NCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRT 491

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK+    EA  + + +++ G +P+ + +  +I  L +      A K+  EMI
Sbjct: 492 YTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMI 551

Query: 332 HKGLL 336
            +GLL
Sbjct: 552 ARGLL 556



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 78/166 (46%)

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M+     P  F +  +++ L K ++   A  +   L  +G   D V    +I+  C
Sbjct: 56  LFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILINCFC 115

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            +G +  +  +   ++ +G  P+  T  ++I G C    +++A + H +++   +    +
Sbjct: 116 HLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQLDRI 175

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +Y TLI GLC  G T  A  L   + ++ I  DV+ YN +I   CK
Sbjct: 176 SYGTLINGLCKIGETKAAIQLMRNLEERSIKPDVVMYNIIIDSLCK 221



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 64/138 (46%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  +FN +      P T  +  ++  L KM     A  +   +  KG+  +  T N +I
Sbjct: 52  DAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILI 111

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C +  +  +  +   +L +GY    +T  TLI GLCL G   +A    +++      
Sbjct: 112 NCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALEFQ 171

Query: 407 RDVITYNTLIQGYCKEGK 424
            D I+Y TLI G CK G+
Sbjct: 172 LDRISYGTLINGLCKIGE 189



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA  ++  M+     P  + +N+++    ++     A  L K +  KG     VT N LI
Sbjct: 52  DAVALFNRMLLMRPPPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNILI 111

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C  G+   ++ +   + ++G   DVIT  TLI+G C  G++
Sbjct: 112 NCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEV 155


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 9/287 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+  L+ +AF  + ++ E  VF ++ T+ S + G   + + D  + L ++++    
Sbjct: 196 IDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNV 255

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+   C +GK+ E   L+  ++++G+ P+   +N L+  +   K  G+   
Sbjct: 256 NPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKN 315

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           + + M       D  +Y  +I+GL K +   EA  +F  ++    +PD V Y+++I GLC
Sbjct: 316 VFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLC 375

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A K   EM  +G  PN  TY S+I   C+   +++A  L K++ D+G      
Sbjct: 376 KSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMY 435

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           TYN L+ GLC  GR  +A  +F+++  KG   DV+TY+ +I G CKE
Sbjct: 436 TYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKE 482



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 158/339 (46%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD+++   L   L      K +++F D   S G   +  S    I  LC+ G    A
Sbjct: 114 GYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPA 173

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
                K++       +  +N+ + G  K       + LY ++ E            LI  
Sbjct: 174 LRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYG 233

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++ + + LL +++   + P    FN L+   C++        L+  M+     PD
Sbjct: 234 FCIVGQLDKAFGLLNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPD 293

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +++G    ++  +A  VFN + + G   D   Y+ +I GL KM  L +A  ++ 
Sbjct: 294 VFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFE 353

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M ++ ++P+   Y+S+I G C+   +  A +   EM D+G     +TY +LI  LC   
Sbjct: 354 GMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSH 413

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + D+A  L +++  +GI  ++ TYN L+ G CK+G++ +
Sbjct: 414 QVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTD 452



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 64/197 (32%), Positives = 103/197 (52%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+       N LI+ +C  +       +   ++     PD  TY  +I GLC + +  E+
Sbjct: 79  GIQSNYITLNILINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKES 138

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
               + L  +G   D V Y T+I+GLCK+G  G A ++  ++  +   P+   YN++I G
Sbjct: 139 LNFHDRLVSQGIKLDHVSYGTLINGLCKIGQTGPALRLLRKIEGEICRPDVVMYNTIIDG 198

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+   + +A  L+ EM +K      VTY +LI G C+ G+ D+A+ L  EM  K +  +
Sbjct: 199 LCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPN 258

Query: 409 VITYNTLIQGYCKEGKI 425
           V T+NTL+ G CKEGK+
Sbjct: 259 VCTFNTLVDGLCKEGKM 275



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 58/194 (29%), Positives = 100/194 (51%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F K++    + K++  V  L   M       +  T   +IN  C  R+   A+ V
Sbjct: 47  PPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNILINSYCHLRQINSAFSV 106

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F  + + GY PD + YTT+I GLC  G + ++      ++ +G+  +  +Y ++I+G C+
Sbjct: 107 FAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQGIKLDHVSYGTLINGLCK 166

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           I     A RL +++  +      V YNT+I GLC      +A+ L+ EM +K +F +V+T
Sbjct: 167 IGQTGPALRLLRKIEGEICRPDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVT 226

Query: 412 YNTLIQGYCKEGKI 425
           Y +LI G+C  G++
Sbjct: 227 YTSLIYGFCIVGQL 240



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 129/283 (45%), Gaps = 9/283 (3%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +PN  +    +  LC+ G + EA    + + + GV   + T+N+ + G   +        
Sbjct: 256 NPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKN 315

Query: 195 LYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +++ + + G          +I        + E  +L   +  + ++P+  A++ LI   C
Sbjct: 316 VFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLC 375

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +        + +  M  R + P+  TY  +I+ LCKS +  +A  +   +K++G   +  
Sbjct: 376 KSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMY 435

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  ++ GLCK G L DA+K++ +++ KG   +  TY+ MI+G C+    +EA  L  +M
Sbjct: 436 TYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKESLFDEALTLLSKM 495

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            DKG     + Y T+I         D+A  L  EM     ++D
Sbjct: 496 EDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREMIDCVDYKD 538


>gi|255569835|ref|XP_002525881.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534795|gb|EEF36485.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 913

 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 166/336 (49%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           F P +  CN L +SL++     +A+     L   G SPN  +  + I+ LC +G +EEA 
Sbjct: 194 FVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAM 253

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
               +++E G+  +   + + + G    + +DL +++           D+      ++ F
Sbjct: 254 YVIKEMEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGF 313

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           CN+ K  +   +LR + ++G+VP+   +  LI RFC+  N  +    L+ M+++    + 
Sbjct: 314 CNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNC 373

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
                +++ LC+     E    FN  K  G   D V Y  V+  LCK+G L +A  +  E
Sbjct: 374 VIVGSILHCLCELGMHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLLDE 433

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  K +  +   Y ++I+GYC   N+ +A ++ +EM + G     VTY+ L++G C +G 
Sbjct: 434 MKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEEMRENGIEIDVVTYDVLVSGFCRNGL 493

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA +L + M  + +  + ITYN +++  C  GK+
Sbjct: 494 ATEALNLLDYMQTQKLKPNSITYNVVVESLCMGGKV 529



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 181/415 (43%), Gaps = 40/415 (9%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFNFN-DPLFFREFLKQ---QNNVLLSIRFFQW 95
           Y  +   +CK+ + +     TLL ++     N D + +   +     Q NV+ + + F+ 
Sbjct: 411 YNNVVDALCKLGKLEEAI--TLLDEMKMKQINMDVMHYTTLINGYCCQGNVVDAFKVFEE 468

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESG 152
           +  + G   D+V+ +VL            A++ LD   +    PN  +  + ++ LC  G
Sbjct: 469 MREN-GIEIDVVTYDVLVSGFCRNGLATEALNLLDYMQTQKLKPNSITYNVVVESLCMGG 527

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            ++EA   F+ +++     S+  + + + G  K + T    KL+  L   G+        
Sbjct: 528 KVKEAEAVFNSIED----KSLDNYFAMINGYCKANHTAGAAKLFFRLSVKGHVKRSCCYN 583

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG---RVSELLHTMV 261
           L++  C +G       LL  +L   + P    + KL +  C         +   +   ++
Sbjct: 584 LLKNLCEEGDNDGILMLLETMLNLNVEPSKFIYGKLFTSLCRAGGAAGMRKAQSVFDMLL 643

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW-- 319
            R   PD   Y  +I   C+     EA  +F+D+K+RG  PD V +T ++ G  K     
Sbjct: 644 KRGWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKK 703

Query: 320 -------------LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
                        + DA  +W EM    + P+   Y  +I GYC++D+L +A  +  EM+
Sbjct: 704 VYSAANAKGGNEDIFDALAIWTEMKDTEIKPDVIFYTVLIDGYCKVDSLHDAIGVFDEMI 763

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++G     +TY  L++G C  G  D A +L ++M+ KGI  D  T + L+ G  K
Sbjct: 764 ERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSALLHGILK 818



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/330 (26%), Positives = 143/330 (43%), Gaps = 47/330 (14%)

Query: 112 LFDSLVEARA----FKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           ++D+LV+A      F  A+D L   G   F P+       +  L ++  ++ A   + +L
Sbjct: 165 VYDALVKAYVSVGMFDDAIDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQL 224

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
           K +G+  +  T+                            +I+A C +G + E   ++++
Sbjct: 225 KRLGLSPNDYTY--------------------------AIVIKALCINGSLEEAMYVIKE 258

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           + E G+ P   A+   I   C  +      ++L      N   D + Y   + G C   K
Sbjct: 259 MEESGITPTGFAYTAYIEGLCVNEMSDLGYQVLQAWKGANIPLDMYAYTVAVRGFCNELK 318

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             +A  V  D+++ G VPD   YT +I   CK G L  A     EM+ KG+  N     S
Sbjct: 319 FDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLLKAYAFLNEMMSKGVKVNCVIVGS 378

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDK-------GYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           ++H  C +        +H E++D+       G     V+YN ++  LC  G+ +EA  L 
Sbjct: 379 ILHCLCELG-------MHSEVVDQFNQFKSLGLFLDGVSYNNVVDALCKLGKLEEAITLL 431

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +EM  K I  DV+ Y TLI GYC +G +V+
Sbjct: 432 DEMKMKQINMDVMHYTTLINGYCCQGNVVD 461



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/286 (25%), Positives = 113/286 (39%), Gaps = 27/286 (9%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--IQAFCNDG 213
            A   F++LK+ G    I T+ +       I R    W L H  + S +L  I   CND 
Sbjct: 82  SALSFFNQLKDSGFKHDISTYAA-------IIRILCYWGL-HKQLRSIFLDIIYVSCNDN 133

Query: 214 KVSEGYELLRQVLEDGLVPENT---------AFNKLISRFCEKKNFGRVSELLHTMVARN 264
                       L DG V  ++          ++ L+  +     F    ++L  M  R 
Sbjct: 134 DTPFEISHFLDTLSDGFVDVDSKKQSLFMSKVYDALVKAYVSVGMFDDAIDVLFQMGRRR 193

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P  F    ++N L K+ K   A  V+  LK  G  P+   Y  VI  LC  G L +A 
Sbjct: 194 FVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKALCINGSLEEAM 253

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT----VTYNTL 380
            +  EM   G+ P  + Y + I G C    + E   L  ++L    G         Y   
Sbjct: 254 YVIKEMEESGITPTGFAYTAYIEGLC----VNEMSDLGYQVLQAWKGANIPLDMYAYTVA 309

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + G C   + D+A  +  +M ++G+  D+  Y  LI  +CK G ++
Sbjct: 310 VRGFCNELKFDKAESVLRDMEKEGMVPDMHCYTALICRFCKAGNLL 355



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/187 (20%), Positives = 80/187 (42%), Gaps = 14/187 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G++PDL++  ++  S       K A+D    +   G  P+  +  + +    ++ + +  
Sbjct: 646 GWTPDLIAYTIMITSYCRMNCLKEAVDLFHDMKQRGIKPDLVTFTVLLDGHHKAHIKKVY 705

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
             A +K     +F ++  W       IK            D+I    LI  +C    + +
Sbjct: 706 SAANAKGGNEDIFDALAIWTEMKDTEIK-----------PDVIFYTVLIDGYCKVDSLHD 754

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +  +++E GL P+   +  L+S  C++ +  R   LL  M  +  +PD  T   +++
Sbjct: 755 AIGVFDEMIERGLEPDIITYTALLSGCCQRGDVDRAVNLLDQMSLKGISPDTRTMSALLH 814

Query: 278 GLCKSRK 284
           G+ K+R+
Sbjct: 815 GILKTRQ 821



 Score = 38.5 bits (88), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 33/187 (17%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D+F   +++  L    + + A   FN LK+ G+  D   Y  +I  LC  G     R ++
Sbjct: 65  DSFKVVDILYNL--KNQPISALSFFNQLKDSGFKHDISTYAAIIRILCYWGLHKQLRSIF 122

Query: 328 FEMIHKGLLPNEY-----------------------------TYNSMIHGYCRIDNLEEA 358
            ++I+     N+                               Y++++  Y  +   ++A
Sbjct: 123 LDIIYVSCNDNDTPFEISHFLDTLSDGFVDVDSKKQSLFMSKVYDALVKAYVSVGMFDDA 182

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             +  +M  + +       N L+  L  + + D A  +++++ + G+  +  TY  +I+ 
Sbjct: 183 IDVLFQMGRRRFVPHIFICNFLMNSLIKNSKLDMALAVYKQLKRLGLSPNDYTYAIVIKA 242

Query: 419 YCKEGKI 425
            C  G +
Sbjct: 243 LCINGSL 249


>gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Cucumis
           sativus]
          Length = 830

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 36/367 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK----VAMDFLDSTGFSPNPNSLEL 143
           +++ FF +L + YGF   + S  V+   L     FK    V  + +   G        +L
Sbjct: 99  VAVAFFYFLINEYGFRHSIFSQFVVSHILAGKGRFKELDSVIKNLIVDQGLGSASIICDL 158

Query: 144 YIQ-----------------CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
            ++                       +I +A    +K+K++    S+ T+NS L     +
Sbjct: 159 LLEKFRNWDSNGLVWDMLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLH---NM 215

Query: 187 DRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV-PENTA 236
             TD++W +Y+++  SG          LI   C   K+ +    L     + +V P   +
Sbjct: 216 RHTDIMWDVYNEIKVSGAPQSECTTSILIHGLCEQSKLEDAISFLHD--SNKVVGPSIVS 273

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            N ++S+FC+             MV      D+F+Y  +++GLC +    EA    +D++
Sbjct: 274 INTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDME 333

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           + G  PD V Y T+  G   +G +  ARK+  +M+ +GL P+  TY ++I G+C++ N+E
Sbjct: 334 KHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIE 393

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA +L +E L +G+    + YN L++ LC  GR +EA  LF+EM    +  D I Y+ LI
Sbjct: 394 EALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILI 453

Query: 417 QGYCKEG 423
            G CKEG
Sbjct: 454 HGLCKEG 460



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 143/328 (43%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +PDLV+   L     +    + A+     T   GF  N     + + CLC+ G IEEA
Sbjct: 371 GLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCKVGRIEEA 430

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++ +                          +L  D I    LI   C +G V  
Sbjct: 431 LTLFDEMETL--------------------------RLEPDFIVYSILIHGLCKEGFVQR 464

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            Y+L  Q+      P + A   ++    +  N         T    +   D   Y  +I+
Sbjct: 465 AYQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMID 524

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  +     EA +++  + ERG  P  V + T+I+G C+ G L +ARKM   +  KGL+P
Sbjct: 525 GYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVP 584

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY ++++ YC + N++E      EM       T VTY  LI GLC   +  E+  L 
Sbjct: 585 SVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLL 644

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E M  KG+  D +TYNT+IQ +CK  +I
Sbjct: 645 EYMYAKGLLPDSVTYNTIIQCFCKGKEI 672



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 161/349 (46%), Gaps = 19/349 (5%)

Query: 93  FQWLH-SHYGFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCL 148
             +LH S+    P +VS N +     +     VA      +   G   +  S  + +  L
Sbjct: 257 ISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMVKNGLLHDSFSYNILLHGL 316

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSA-----LLGCI----KIDRTDLVWKLYHDL 199
           C +G ++EA      +++ GV   + T+N+      LLG +    K+ +  L+  L  DL
Sbjct: 317 CVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGARKVVQKMLLQGLNPDL 376

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---L 256
           +    LI   C  G + E  +L ++ L  G       +N L+S  C+    GR+ E   L
Sbjct: 377 VTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLLSCLCK---VGRIEEALTL 433

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M      PD   Y  +I+GLCK      AY+++  ++ +   P       V+ GL K
Sbjct: 434 FDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKFPHHFAQRAVLLGLFK 493

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +AR  +       L+ +   YN MI GY R+D + EA +L+ +M+++G   + VT
Sbjct: 494 NGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVT 553

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +NTLI G C  G   EA  + E +  KG+   V+TY TL+  YC+ G +
Sbjct: 554 FNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNM 602



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 132/287 (45%), Gaps = 9/287 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           L ++G I EA   F     M +   +  +N  + G +++D      +LY+ +IE G    
Sbjct: 491 LFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPS 550

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI  FC  G + E  ++L  +   GLVP    +  L++ +CE  N   +   LH
Sbjct: 551 VVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLH 610

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M A    P + TY  +I GLC+  K  E+ ++   +  +G +PD+V Y T+I   CK  
Sbjct: 611 EMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGK 670

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A +++  M+     P + TY  +I+  C   +L++  R+   + D+       TY 
Sbjct: 671 EITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYM 730

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T+I   C  G+  +A   F +M  KG    +  Y+ +I   CK G I
Sbjct: 731 TIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCKRGLI 777



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 154/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  +++  N+L   L +    + A+   D +++    P+     + I  LC+ G ++ A
Sbjct: 406 GFKLNVIFYNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRA 465

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV------WK---LYHDLIESGYLIQA 208
           +  + +++    F       + LLG  K             W    L  D++    +I  
Sbjct: 466 YQLYEQMRLKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDG 525

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +     ++E  +L  +++E G+ P    FN LI+ FC + +     ++L  +  +   P 
Sbjct: 526 YVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPS 585

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++N  C+     E +   ++++    VP  V YT +I GLC+   + ++ ++  
Sbjct: 586 VVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLE 645

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KGLLP+  TYN++I  +C+   + +A +L+  ML      T VTY  LI  LC+ G
Sbjct: 646 YMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFG 705

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +   +   +  + I     TY T+I+ +C +G++
Sbjct: 706 DLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQV 742



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/330 (24%), Positives = 152/330 (46%), Gaps = 11/330 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           + ++L   L E    + A+ FL  +     P+  S+   +   C+ GLI+ A   F  + 
Sbjct: 239 TTSILIHGLCEQSKLEDAISFLHDSNKVVGPSIVSINTIMSKFCKVGLIDVARSXFCLMV 298

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVS 216
           + G+     ++N  L G       D       D+ + G          L + F   G +S
Sbjct: 299 KNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMS 358

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
              ++++++L  GL P+   +  LI   C+  N     +L    ++R    +   Y  ++
Sbjct: 359 GARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIFYNMLL 418

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           + LCK  +  EA  +F++++     PD ++Y+ +IHGLCK G++  A +++ +M  K   
Sbjct: 419 SCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMRLKRKF 478

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+ +   +++ G  +  N+ EA+            E  V YN +I G        EA  L
Sbjct: 479 PHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIAEAMQL 538

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + +M ++GI   V+T+NTLI G+C+ G ++
Sbjct: 539 YYKMIERGITPSVVTFNTLINGFCRRGDLM 568



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 128/281 (45%), Gaps = 13/281 (4%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK-----------LYHDLIES 202
           I EA   + K+ E G+  S+ T+N+ + G  +  R DL+             L   ++  
Sbjct: 532 IAEAMQLYYKMIERGITPSVVTFNTLINGFCR--RGDLMEARKMLEVIRLKGLVPSVVTY 589

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             L+ A+C  G + E +  L ++  + +VP +  +  LI   C +       +LL  M A
Sbjct: 590 TTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYA 649

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   PD+ TY  +I   CK ++  +A +++N +      P  V Y  +I+ LC  G L D
Sbjct: 650 KGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKD 709

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
             +M   +  + +   + TY ++I  +C    + +A     +ML KG+  +   Y+ +I 
Sbjct: 710 VDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVIN 769

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            LC  G   EA + F  M  +G+  D     T++  + ++G
Sbjct: 770 RLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQG 810



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/312 (21%), Positives = 128/312 (41%), Gaps = 12/312 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V  N++ D  V       AM     +   G +P+  +    I   C  G + EA    
Sbjct: 515 DVVLYNIMIDGYVRLDGIAEAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKML 574

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCND 212
             ++  G+  S+ T+ + +    ++     ++   H++         +    LI+  C  
Sbjct: 575 EVIRLKGLVPSVVTYTTLMNAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQ 634

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            K+ E  +LL  +   GL+P++  +N +I  FC+ K   +  +L + M+  N  P   TY
Sbjct: 635 NKMHESLQLLEYMYAKGLLPDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTY 694

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
           + +IN LC      +  R+   +++R        Y T+I   C  G +  A   + +M+ 
Sbjct: 695 KVLINALCIFGDLKDVDRMVVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLA 754

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KG + +   Y+++I+  C+   + EAK     ML +G         T++      G    
Sbjct: 755 KGFVISIRDYSAVINRLCKRGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSS 814

Query: 393 AYHLFEEMAQKG 404
            +     + + G
Sbjct: 815 VFEFLAMVVKSG 826


>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 938

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 167/362 (46%), Gaps = 37/362 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G SPD+ + NVL  SL +      A+  L +   S +  +    I  LCE GL +EA+  
Sbjct: 124 GVSPDVFALNVLIHSLCKVGQLSFAISLLRNRVISVDTVTYNTVISGLCEHGLADEAYQF 183

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDR-------TDLVWKL------------------ 195
            S++ ++G+     ++N+ + G  K+          D + +L                  
Sbjct: 184 LSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLITHTILISSYYNLHAI 243

Query: 196 ---YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
              Y D++ SG+         +I   C DGKV EG  LLR++ E G+ P +  +  L+  
Sbjct: 244 EEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREMEEMGVYPNHVTYTTLVDS 303

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             + K++     L   MV R    D   Y  ++ GL K+    EA + F  L E   VP+
Sbjct: 304 LFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEVPN 363

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT ++ GLCK G L  A  +  +M+ K + PN  TY+SMI+GY +   LEEA  L +
Sbjct: 364 VVTYTALVDGLCKAGDLSSAEFIITQMLEKSVFPNVVTYSSMINGYVKKGMLEEAVSLMR 423

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M D+       TY T+I GL   G+ + A  + +EM   G+  +    + L+    + G
Sbjct: 424 KMEDQNVVPNGFTYGTVIDGLFKAGKQEVASEMSKEMRLIGVEENNYILDALVNHLKRIG 483

Query: 424 KI 425
           +I
Sbjct: 484 RI 485



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 151/324 (46%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N++ +S  +   F+  +   D + S G  P+     + +  LCE G ++EA
Sbjct: 568 GIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLCEKGKMKEA 627

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++  M +  ++ T+   L    K  R D ++K +  L+               S 
Sbjct: 628 IDILDQMMFMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLL---------------SY 672

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G +L RQV           +N LI+  C+     + + ++  M AR   PD  T+  +++
Sbjct: 673 GIKLSRQV-----------YNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMH 721

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G        +A   ++ + E G  P+   Y T+I GL   G + +  K   EM  +G+ P
Sbjct: 722 GYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRP 781

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +++TYN++I G  +I N +E+  ++ EM+  G    T TYN LI+     G+  +A  L 
Sbjct: 782 DDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELM 841

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
           +EM ++ +  +  TY T+I G CK
Sbjct: 842 KEMGKRRVSPNTSTYCTMISGLCK 865



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 124/276 (44%), Gaps = 9/276 (3%)

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
           A+  ++E G+   I T+N  +    K    + + KL+  +   G          ++   C
Sbjct: 560 AYKGMREKGIEPDIATFNIMMNSQRKQGDFEGILKLWDKMKSCGIKPSLMICNIVVGMLC 619

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK+ E  ++L Q++   + P  T +   +    + K    + +   T+++        
Sbjct: 620 EKGKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKRADAIFKTHETLLSYGIKLSRQ 679

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  +I  LCK     +A  V  D++ RG+VPDTV +  ++HG      +G A   +  M
Sbjct: 680 VYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHGYFVGSHVGKALSTYSMM 739

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +  G+ PN  TYN++I G      ++E ++   EM  +G      TYN LI+G    G  
Sbjct: 740 MEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNK 799

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            E+  ++ EM   G+     TYN LI  + K GK++
Sbjct: 800 KESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKML 835



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 129/306 (42%), Gaps = 29/306 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLCESGLIEEA 157
           G  P L+ CN++   L E    K A+D LD   F    PN  +  +++    +    +  
Sbjct: 603 GIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFLDMSSKHKRADAI 662

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     L   G+  S + +N+ +    K+  T     +  D+   G+         L+  
Sbjct: 663 FKTHETLLSYGIKLSRQVYNTLIATLCKLGMTRKAAMVMEDMEARGFVPDTVTFNALMHG 722

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +     V +       ++E G+ P    +N +I    +      V + L  M +R   PD
Sbjct: 723 YFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAGLIKEVEKWLSEMKSRGMRPD 782

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +FTY  +I+G  K   + E+  ++ ++   G VP T  Y  +I    K+G +  A ++  
Sbjct: 783 DFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVLISEFAKVGKMLQATELMK 842

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDN------------LEEAKRLHKEML-DKGYGETTV 375
           EM  + + PN  TY +MI G C++              L EAK L KEM+ +KGY    +
Sbjct: 843 EMGKRRVSPNTSTYCTMISGLCKLCTHPEVEWNKKAMYLAEAKGLLKEMIEEKGY----I 898

Query: 376 TYNTLI 381
            YN  I
Sbjct: 899 PYNQTI 904



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 17/244 (6%)

Query: 184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + +++T +   L+H L       + + + G++      L  +   G+VP+   +N LI +
Sbjct: 49  LALNKTRVYVSLFHTLF------RLYLSCGRLYGAARTLSAMCTFGVVPDLCLWNSLIHQ 102

Query: 244 F-CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
           F        +VS +   M+A   +PD F    +I+ LCK  +   A  +   L+ R    
Sbjct: 103 FNVNGLVHDQVSLVYSKMIACGVSPDVFALNVLIHSLCKVGQLSFAISL---LRNRVISV 159

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           DTV Y TVI GLC+ G   +A +   EM+  G+LP+  ++N++I G+C++ N   AK L 
Sbjct: 160 DTVTYNTVISGLCEHGLADEAYQFLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALV 219

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            E+ +       +T+  LI+        +EAY    +M   G   DV+T++++I   CK+
Sbjct: 220 DEISEL----NLITHTILISSYYNLHAIEEAYR---DMVMSGFDPDVVTFSSIINRLCKD 272

Query: 423 GKIV 426
           GK++
Sbjct: 273 GKVM 276


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 165/370 (44%), Gaps = 50/370 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCE--SGLIEEAF 158
           P  V  N L  S+ + +     +     +DS G  PN  +L + I   C    G I EA 
Sbjct: 59  PSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHILINSFCHLNRGKIGEAL 118

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
             F K+   G    + T+ + + G  K+  T    +L   +++            +I + 
Sbjct: 119 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 178

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C D +V+E + L  +++  G+ P+   +N LI   C    +  V+ LL+ MV     PD 
Sbjct: 179 CKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDV 238

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            ++  V++ LCK  K  EA+ V + + +RG  +P+ + Y T+I+G CK+  +  A  ++ 
Sbjct: 239 VSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFG 298

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY----------- 377
           EM  + L+P+  TY+++IHG C ++ L++A  L  EM+        VTY           
Sbjct: 299 EMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNR 358

Query: 378 ------------------------NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
                                   N  I G+C  G  + A  LF  ++ KG+  DV TY+
Sbjct: 359 YLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYS 418

Query: 414 TLIQGYCKEG 423
            +I G C+ G
Sbjct: 419 IMINGLCRRG 428



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 140/279 (50%), Gaps = 12/279 (4%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           I+ A  +F+++  M    S   +N  L    K+     +  L H +   G          
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 205 LIQAFC--NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           LI +FC  N GK+ E   L  +++ +G  P+   +  LI+  C+  N      LL +MV 
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ 161

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +N  P+ F Y  +I+ LCK R+  EA+ +F+++  +G  PD   Y ++IH LC +     
Sbjct: 162 KNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKH 221

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLI 381
              +  EM+   ++P+  ++N+++   C+   + EA  +  +M+ + G     ++YNTLI
Sbjct: 222 VATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLI 281

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            G C   R D+A +LF EM ++ +  D +TY+TLI G C
Sbjct: 282 NGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 320



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 160/337 (47%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+V+   L + L +      A+  L S       PN  +    I  LC+   + EA
Sbjct: 128 GFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEA 187

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  FS++   G+   I T+NS +     +     V  L +++++S  +         + A
Sbjct: 188 FNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDA 247

Query: 209 FCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            C +GKV+E ++++ ++++  G +P   ++N LI+ +C+ +   +   L   M  +   P
Sbjct: 248 LCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIP 307

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+GLC   +  +A  +F+++     +P+ V Y  ++  LCK  +L +A  + 
Sbjct: 308 DTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALL 367

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +    L P+    N  I G CR   LE A+ L   +  KG      TY+ +I GLC  
Sbjct: 368 KAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRR 427

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G  DEA  LF EM + G   +   YNT+ +G+ +  +
Sbjct: 428 GLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNE 464



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 109/201 (54%), Gaps = 5/201 (2%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLH---TMVARNRAPDNFTYEEVINGLCKSRKR 285
           G+ P     + LI+ FC   N G++ E LH    M+     PD  TY  +INGLCK    
Sbjct: 91  GIPPNIYTLHILINSFCHL-NRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNT 149

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A R+   + ++   P+   Y T+I  LCK   + +A  ++ EM+ KG+ P+ +TYNS+
Sbjct: 150 SAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSL 209

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-G 404
           IH  C +   +    L  EM+D       V++NT++  LC  G+  EA+ + ++M Q+ G
Sbjct: 210 IHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGG 269

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
              +VI+YNTLI GYCK  +I
Sbjct: 270 CMPNVISYNTLINGYCKIQRI 290


>gi|255578729|ref|XP_002530223.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530270|gb|EEF32170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 179/373 (47%), Gaps = 30/373 (8%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFS 135
            LK Q + +LS+ FF W+ +    S  L + +++   L + R FK A   L S    GF 
Sbjct: 66  LLKIQKDHVLSLEFFNWVQTENPSSHTLETHSMILHILTKNRKFKSAELILKSVLVKGFI 125

Query: 136 PNPNSL---ELYIQCLCESG---------------LIEEAFCAFSKLKEMGVFGSIKTWN 177
             P+ L    LY   +C+S                    A   F ++K  G   ++++ N
Sbjct: 126 DLPDKLFEAILYSYRMCDSSPRVFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCN 185

Query: 178 SALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLED 228
           + L   + + R D+    Y ++              +++AFC  GK+ +  ++  ++   
Sbjct: 186 AYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESV 245

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+ P +T++N LI  +C K       +L ++M A+    +  T+  +I+G CK  K  EA
Sbjct: 246 GISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEA 305

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +VF+++K     P+T+ Y T+I+G  +MG     R+++ EM   G+  +  TYN++I G
Sbjct: 306 SKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILG 365

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+    ++A  + KE+  +       T++ LI+G C+   +D A+ L++ M + G   +
Sbjct: 366 LCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPN 425

Query: 409 VITYNTLIQGYCK 421
             T+N L+  +CK
Sbjct: 426 EQTFNMLVSAFCK 438



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 146/328 (44%), Gaps = 29/328 (8%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF P + SCN    SL++     +A+ F   +     SPN  +  + ++  C+SG +E+
Sbjct: 175 YGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISPNVYTRNMVMRAFCKSGKLEK 234

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A   F +++ +G+  +  ++N+ ++G                          +C  G ++
Sbjct: 235 AVQVFEEMESVGISPNDTSYNTLIMG--------------------------YCRKGLLN 268

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
              +L   +   G+      FN LI  FC++      S++   M   N AP+  TY  +I
Sbjct: 269 SAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLI 328

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG  +        R++ ++   G   D + Y  +I GLCK G    A  M  E+  + L+
Sbjct: 329 NGHSQMGNSEMGRRLYEEMSRNGVKADILTYNALILGLCKEGKTKKAAYMVKELDKENLV 388

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN  T++++I G C  +N + A +L+K M+  G      T+N L++  C +   + A+ +
Sbjct: 389 PNASTFSALISGQCIRNNSDRAFQLYKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLV 448

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             EM ++         + +  G C  GK
Sbjct: 449 LMEMFERCFTPGSDVLSEIYHGLCCCGK 476



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 47/155 (30%), Positives = 76/155 (49%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            ++ +   L   +K   A   F  +K  G++P        +  L  +  +  A   + EM
Sbjct: 148 VFDSLFKTLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEM 207

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
               + PN YT N ++  +C+   LE+A ++ +EM   G      +YNTLI G C  G  
Sbjct: 208 RRCRISPNVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKGLL 267

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + A  L   M  KG+  +V+T+N+LI G+CKEGK+
Sbjct: 268 NSAVKLKNSMRAKGVEANVVTFNSLIDGFCKEGKL 302



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 76/171 (44%), Gaps = 18/171 (10%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV--PDTV----------------MYTTVIH 312
           T+  +++ L K+RK   A  +   +  +G++  PD +                ++ ++  
Sbjct: 95  THSMILHILTKNRKFKSAELILKSVLVKGFIDLPDKLFEAILYSYRMCDSSPRVFDSLFK 154

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            L  M    +A   + +M   G LP   + N+ +     +  ++ A   +KEM       
Sbjct: 155 TLAHMKKFRNATDTFLQMKGYGFLPTVESCNAYLSSLLDLHRVDIALAFYKEMRRCRISP 214

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              T N ++   C  G+ ++A  +FEEM   GI  +  +YNTLI GYC++G
Sbjct: 215 NVYTRNMVMRAFCKSGKLEKAVQVFEEMESVGISPNDTSYNTLIMGYCRKG 265



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 104/257 (40%), Gaps = 48/257 (18%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +++ F+ + S  G SP+  S N L            A+   +S    G   N  +    I
Sbjct: 235 AVQVFEEMES-VGISPNDTSYNTLIMGYCRKGLLNSAVKLKNSMRAKGVEANVVTFNSLI 293

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
              C+ G + EA   FS++K + V  +  T+N+ + G  ++  +++  +LY ++  +G  
Sbjct: 294 DGFCKEGKLHEASKVFSEMKVLNVAPNTITYNTLINGHSQMGNSEMGRRLYEEMSRNGVK 353

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF------------------- 237
                   LI   C +GK  +   +++++ ++ LVP  + F                   
Sbjct: 354 ADILTYNALILGLCKEGKTKKAAYMVKELDKENLVPNASTFSALISGQCIRNNSDRAFQL 413

Query: 238 ----------------NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
                           N L+S FC+ ++F     +L  M  R   P +    E+ +GLC 
Sbjct: 414 YKSMVRIGCHPNEQTFNMLVSAFCKNEDFEGAFLVLMEMFERCFTPGSDVLSEIYHGLCC 473

Query: 282 SRKRLEAYRVFNDLKER 298
             K   A ++ ++LK R
Sbjct: 474 CGKEHLAMKLSSELKAR 490


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 161/339 (47%), Gaps = 16/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +   L   L     F      +D     G   +     + I  LC++G++ EA
Sbjct: 215 GVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEA 274

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG--CIKIDRTDLVWKLYHDLIESGY---------LI 206
              F ++   G   +I T  +AL+G  C+K    D+  +L+  + E G+          I
Sbjct: 275 REMFDEMVNRGYEPNIVTC-TALMGGYCLK-GNVDMARELFDAIGEWGFKRDVWTYNVFI 332

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C  G+V +   +  ++  +G+VP    +N LI   C+        E++ TM      
Sbjct: 333 HGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLT 392

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  T   +++GLCKS++  +A  +FN L E G  PD   YT +IHG C    +G+A  +
Sbjct: 393 PDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNL 452

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M  K L+P+  TY+ +I G CR   +  A RL  EM  KG    T+TY+ L+  L  
Sbjct: 453 LRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWK 512

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               DEA  LF +M ++G+  DV+ Y  +I GYCK  +I
Sbjct: 513 KQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERI 551



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 150/326 (46%), Gaps = 29/326 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G+ P++V+C  L           +A +  D+ G   F  +  +  ++I   C+ G + +A
Sbjct: 285 GYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDA 344

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F ++   GV  +I T+NS                          LI   C  G+VS 
Sbjct: 345 VRVFDEMCREGVVPNIVTYNS--------------------------LIDCLCKAGEVSG 378

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            +E+++ +   GL P+      L+   C+ K   +   L + +V     PD ++Y  +I+
Sbjct: 379 AWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIH 438

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C SR+  EA  +  D+  +  VP  V Y+ +I GLC+ G + +A ++  EM  KG LP
Sbjct: 439 GCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLP 498

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TY+ ++    +  +L+EA  L  +M+ +G     + Y  +I G C   R DEA +LF
Sbjct: 499 DTITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLF 558

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
            EM  K +  D++TY  L     K G
Sbjct: 559 REMHMKNLVPDIVTYTILFNAVFKSG 584



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 159/347 (45%), Gaps = 20/347 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---------DSTGFSPNPNSL--ELYIQCLC 149
           GFS + VS  +L + L E      A++ L         +  GF    N +   + I CLC
Sbjct: 137 GFSLNEVSYGILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLC 196

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
            +G ++E F  ++++   GV  +  T+ S + G   + +    + L  ++I  G      
Sbjct: 197 RNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVY 256

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI   C +G + E  E+  +++  G  P       L+  +C K N     EL   +
Sbjct: 257 VFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAI 316

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
                  D +TY   I+G CK  +  +A RVF+++   G VP+ V Y ++I  LCK G +
Sbjct: 317 GEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEV 376

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A ++   M   GL P+  T   ++ G C+   L++A  L  ++++ G      +Y  L
Sbjct: 377 SGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTIL 436

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           I G C   R  EA +L  +M  K +   ++TY+ LI G C+ G+I N
Sbjct: 437 IHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISN 483



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 157/345 (45%), Gaps = 20/345 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+  D V+ N +   L        A++F D   + GFS N  S  + I  LCE+G + EA
Sbjct: 102 GYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILINGLCENGRVNEA 161

Query: 158 FCAFSKLKEM------GVF--GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
                 +++       G F  G++  ++  +    +    D  ++ Y++++ +G      
Sbjct: 162 VNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEF 221

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI+  C  GK  EG+ L+ +++  GL      F  LI   C+        E+   M
Sbjct: 222 TYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEM 281

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           V R   P+  T   ++ G C       A  +F+ + E G+  D   Y   IHG CK+G +
Sbjct: 282 VNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRV 341

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            DA +++ EM  +G++PN  TYNS+I   C+   +  A  + K M   G     VT   L
Sbjct: 342 RDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCIL 401

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + GLC   R D+A  LF ++ + G+  DV +Y  LI G C   ++
Sbjct: 402 LDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRM 446



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 116/256 (45%), Gaps = 43/256 (16%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G VS  + +  ++L+ G   +  A N ++   C      +  E    +V    + +  +Y
Sbjct: 86  GHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSY 145

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKER------GYV--PDTVMYTTVIHGLCKMGWLGDAR 324
             +INGLC++ +  EA  +   +++       G+    + VMY+ VI  LC+ G++ +  
Sbjct: 146 GILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGF 205

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDN------------------------------ 354
           + + EM+  G+ PNE+TY S+I G C +                                
Sbjct: 206 EFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGL 265

Query: 355 -----LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
                L EA+ +  EM+++GY    VT   L+ G CL G  D A  LF+ + + G  RDV
Sbjct: 266 CKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDV 325

Query: 410 ITYNTLIQGYCKEGKI 425
            TYN  I GYCK G++
Sbjct: 326 WTYNVFIHGYCKVGRV 341



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 73/147 (49%), Gaps = 8/147 (5%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           ++ +F  + +RGY  DTV   TV+ GLC  G +  A +   E+++ G   NE +Y  +I+
Sbjct: 91  SFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSYGILIN 150

Query: 348 GYCRIDNLEEAKRLHKEM------LDKGY--GETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           G C    + EA  L + +         G+      V Y+ +I  LC +G  DE +  + E
Sbjct: 151 GLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGFEFYNE 210

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKIV 426
           M   G+  +  TY +LI+G C  GK +
Sbjct: 211 MMGNGVCPNEFTYGSLIRGLCGVGKFL 237



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 95/228 (41%), Gaps = 15/228 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+C +L D L +++    A+   + L  +G +P+  S  + I   C S  + EA
Sbjct: 390 GLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEA 449

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 +    +   I T++  + G  +  R    W+L +         D I    L+ A
Sbjct: 450 MNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDA 509

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                 + E   L  Q+++ GL P+   +  +I  +C+ +       L   M  +N  PD
Sbjct: 510 LWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPD 569

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             TY  + N + KS      ++  N +++    P  + Y   +  LCK
Sbjct: 570 IVTYTILFNAVFKSGSNSYEWKFVNVIRDINPPPRVLKY---LAALCK 614


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 186/408 (45%), Gaps = 49/408 (12%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA---RAFK 123
           S N N  + F E +K+ ++ LL ++FF++  +H   +    + ++L  +L +     + K
Sbjct: 71  SRNLNPSIAF-EVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAK 129

Query: 124 VAMDFLDSTGFSPNPNSLELYIQC-----------------------------------L 148
           +  D + S G  P+ + LEL +                                     L
Sbjct: 130 IVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNML 189

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DL 199
            +  L++EA   F +  E      + ++N  + G  +I   D  ++ +          D+
Sbjct: 190 VKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDI 249

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQ-VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +    LI  FC   ++S+G++LL++ +L  G+ P+   +  +IS +C+  +    SEL  
Sbjct: 250 VSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFD 309

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            MV+    P++FT+  +I+G  K      A  ++  +   G +PD V +T++I G C+ G
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +    K+W EM  + L PN YTY  +I+  C+ + + EA+   + +           YN
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +I G C  G+ DEA  +  EM +K    D IT+  LI G C +G++V
Sbjct: 430 PVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMV 477



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 23/355 (6%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           +  F +N+ L     L +QN V  ++  F+  H    F PD+ S N+L   L        
Sbjct: 177 VSPFVYNNLL---NMLVKQNLVDEAVLLFRE-HLEPYFVPDVYSFNILIRGLCRIGEIDK 232

Query: 125 AMDFLDSTG-FS--PNPNSLELYIQCLCESGLIEEAFCAFSKLKE----MGVFGSIKTWN 177
           A +F  + G F   P+  S    I   C    + E       LKE     GV   + T+ 
Sbjct: 233 AFEFFQNMGNFGCFPDIVSYNTLINGFCR---VNEISKGHDLLKEDMLIKGVSPDVITYT 289

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLED 228
           S + G  K+       +L+ +++ SG          LI  F   G +     +  ++L  
Sbjct: 290 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G +P+   F  LI  +C +    +  +L   M  RN +P+ +TY  +IN LCK  +  EA
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                 LK    VP   +Y  VI G CK G + +A  +  EM  K   P++ T+  +I G
Sbjct: 410 RNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIG 469

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            C    + EA     +M++       +T N+LI+ L   G  +EA  + +   QK
Sbjct: 470 NCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQK 524


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 136/257 (52%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 121 CTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 180

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  +++ L+   C++   G+  +LL  M       +PD   Y  VI+G  K     +A  
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACD 240

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y++V+H LCK   +  A     +M++KG+LPN +TYN++I+GY 
Sbjct: 241 LFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM  +      VT+N L+  LC +G+  EA  +F+ MA KG   DV 
Sbjct: 301 STGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 360

Query: 411 TYNTLIQGYCKEGKIVN 427
           +YN ++ GY  +G +V+
Sbjct: 361 SYNIMLNGYATKGCLVD 377



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/345 (26%), Positives = 169/345 (48%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +       PD+V+ N+L  SL +    K A D  D+    G +P+  S  + +
Sbjct: 308 AVRVFKEMRRQ-SILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIML 366

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWKLYHD---- 198
                 G + +    F  +   G+   I T+N    A   C  +D+  +++    D    
Sbjct: 367 NGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 426

Query: 199 --LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
             ++    +I A C  GK+ +  E   Q+++ G+ P+  A++ LI  FC   +  +  EL
Sbjct: 427 PNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  P  V+Y+ ++ G C 
Sbjct: 487 ISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCL 546

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN+  Y ++++GYC+I  ++E   L +EML KG   +T+ 
Sbjct: 547 VGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 606

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN +I GL   GRT  A   F EM + GI  +  TY+ +++G  K
Sbjct: 607 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 651



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 165/374 (44%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PD V+ + +  +L +ARA   A  FL                       STG     
Sbjct: 249 GIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEA 308

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS---- 178
                        P+  +  + +  LC+ G I+EA   F  +   G    + ++N     
Sbjct: 309 VRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNG 368

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I         LI+A+ N G + +   +  ++ + G+ P
Sbjct: 369 YATKGCL-VDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +  +I+  C         E  + M+ +  APD + Y  +I G C     L+A  + 
Sbjct: 428 NVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELI 487

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++   G   D V+++++I+ LCK+G + DA+ ++   ++ GL P    Y+ ++ GYC +
Sbjct: 488 SEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLV 547

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM QKGI    I Y
Sbjct: 548 GKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 607

Query: 413 NTLIQGYCKEGKIV 426
           N +I G  + G+ V
Sbjct: 608 NIIIDGLFEAGRTV 621



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 159/354 (44%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   D++  N L     EA+    A+D L       G  P+  S  +
Sbjct: 129 LALAFFGQLL-RTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSI 187

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC+ G   +A      + E G   S  +  +N+ + G  K    +    L+ ++++
Sbjct: 188 LLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C    + +    LRQ++  G++P N  +N LI  +     +  
Sbjct: 248 RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKE 307

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M  ++  PD  T+  ++  LCK  K  EA  VF+ +  +G  PD   Y  +++
Sbjct: 308 AVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLN 367

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G    G L D   ++  M+  G+ P   T+N +I  Y     L++A  +  EM D G   
Sbjct: 368 GYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 427

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             +TY T+IA LC  G+ D+A   F +M  +G+  D   Y+ LIQG+C  G ++
Sbjct: 428 NVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLL 481



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/420 (22%), Positives = 180/420 (42%), Gaps = 55/420 (13%)

Query: 54  KPRWEQTLLSDIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL 112
           K    Q++L D+ +FN     L     +K+  +V  ++       +  G +PD+ S N++
Sbjct: 313 KEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTM-------AMKGQNPDVFSYNIM 365

Query: 113 FDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV 169
            +            D  D     G +P   +  + I+     G++++A   F+++++ GV
Sbjct: 366 LNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGV 425

Query: 170 FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYE 220
             ++ T+ + +    +I + D   + ++ +I+ G          LIQ FC  G + +  E
Sbjct: 426 KPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKE 485

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ +++ +G+  +   F+ +I+  C+         +    V     P    Y  +++G C
Sbjct: 486 LISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYC 545

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
              K  +A RVF+ +   G  P+ V+Y T+++G CK+G + +   ++ EM+ KG+ P+  
Sbjct: 546 LVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTI 605

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY----------------------- 377
            YN +I G         AK    EM + G      TY                       
Sbjct: 606 LYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKEL 665

Query: 378 ------------NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                       NT+IAG+    R +EA  LF  +++ G+   V+TY+ +I    KEG +
Sbjct: 666 RAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLV 725



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 53/234 (22%), Positives = 104/234 (44%), Gaps = 9/234 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G + +A   F     +G+  +   ++  + G   + + +   +++  ++ +G 
Sbjct: 506 INNLCKLGRVMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGI 565

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G++ EG  L R++L+ G+ P    +N +I    E         
Sbjct: 566 EPNDVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 625

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             H M     A +  TY  V+ GL K+R   EA  +F +L+      D +   T+I G+ 
Sbjct: 626 KFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 685

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +   + +A+ ++  +   GL+P   TY+ MI    +   +EEA+ +   M + G
Sbjct: 686 QTRRVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 739



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  +TY  ++    R    E A     ++L  G     +  N L+ G C   RTDEA 
Sbjct: 107 LSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +Y+ L++  C +GK
Sbjct: 167 DILLHRTPELGCVPDVFSYSILLKSLCDQGK 197


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 109/399 (27%), Positives = 175/399 (43%), Gaps = 74/399 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDF-LDSTGFSPNPN--SLELYIQCLCESGL 153
           G SPD+V+ N    +L  +     A ++  D  +D     P PN  +  L +   C+ G+
Sbjct: 156 GLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGM 215

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---TDLVWK---------------- 194
           +EEA   F K+K      + +++N  LLG ++I +     LV K                
Sbjct: 216 LEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNI 275

Query: 195 -------------------------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
                                    +  D +    L+  +C+ GKVSE   +LR+++ DG
Sbjct: 276 VMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDG 335

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             P N   N L+    ++       ELL  M  +    D  T   VI+GLC + K  +A 
Sbjct: 336 CSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKAI 395

Query: 290 RVFNDLKERGY-----------------------VPDTVMYTTVIHGLCKMGWLGDARKM 326
            + N +   G                        +PD + Y+T+I GLCK G +G+A+K 
Sbjct: 396 EIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCKAGRVGEAKKK 455

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM+ K L P+   Y+  IH +C+   +  A R+ K+M  KG  +T  TYN+LI GL  
Sbjct: 456 FIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNSLIMGLGS 515

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  E Y L +EM ++G+  DV  YN ++   C+ G++
Sbjct: 516 KNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRV 554



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/299 (30%), Positives = 143/299 (47%), Gaps = 30/299 (10%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ++G SP   +  + I  LC+SG +++A   F K+ E G   +  ++              
Sbjct: 49  ASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSF-------------- 94

Query: 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
                       G L++ +C  G  S+G ELL ++   G  P    +N LIS FC++   
Sbjct: 95  ------------GILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKT 142

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV----PDTVM 306
               +L+  M     +PD  T+   I+ LC S K LEA R+F D++    +    P+ + 
Sbjct: 143 DDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIIT 202

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  ++ G CK G L +AR ++ +M     L N  +YN  + G  RI  L EA+ + KEM+
Sbjct: 203 YNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLLEAQLVLKEMV 262

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D G      +YN ++ GLC +G   +A  L   M   G+  D +TY TL+ GYC  GK+
Sbjct: 263 DMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKV 321



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/341 (27%), Positives = 152/341 (44%), Gaps = 16/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  + NVL   L ++     A +  D     G  PN  S  + ++  C +G   + 
Sbjct: 51  GVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKG 110

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++ +G   +   +N+ +    K  +TD   KL  ++ + G           I A
Sbjct: 111 LELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISA 170

Query: 209 FCNDGKVSEGYELLRQVLEDGLV----PENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            C+ GKV E   + R +  D ++    P    +N ++  FC++        L   M    
Sbjct: 171 LCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSE 230

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              +  +Y   + GL +  K LEA  V  ++ + G  P+   Y  V+ GLCK G L DAR
Sbjct: 231 NLMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDAR 290

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +   M   G+LP+  TY +++HGYC    + EA  + +EM+  G      T N L+  L
Sbjct: 291 MLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSL 350

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              GR  EA  L ++M +KG   D +T N +I G C  GK+
Sbjct: 351 WKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKL 391



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 32/321 (9%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  S  + +  LC++G++ +A      +   GV     T+ + L G     +    
Sbjct: 265 GMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEA 324

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             +  +++  G          L+ +   +G++SE  ELL+++ E G V +    N +I  
Sbjct: 325 NNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDG 384

Query: 244 FCEKKNFGRVSELLHTMVARNRA-----------------------PDNFTYEEVINGLC 280
            C      +  E+++ M     A                       PD  +Y  +I+GLC
Sbjct: 385 LCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLC 444

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K+ +  EA + F ++  +   PD+ +Y   IH  CK G +  A ++  +M  KG      
Sbjct: 445 KAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQ 504

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYNS+I G    + + E   L  EM ++G       YN +++ LC  GR  +A  + +EM
Sbjct: 505 TYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEM 564

Query: 401 AQKGIFRDVITYNTLIQGYCK 421
            QKGI  ++ +++ LI+ +CK
Sbjct: 565 LQKGISPNISSFSILIKAFCK 585



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 87/366 (23%), Positives = 155/366 (42%), Gaps = 52/366 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  +CN+L  SL +      A + L   +  G+  +  +  + I  LC +G +++A
Sbjct: 335 GCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDTVTCNIVIDGLCNNGKLDKA 394

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK------IDRTDLVWKLYHDLIESGYLIQAFCN 211
                    + +   + T  SA LG +       +D +D   K   DLI    +I   C 
Sbjct: 395 ---------IEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIISGLCK 445

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+V E  +   +++   L P++  ++  I  FC++        +L  M  +       T
Sbjct: 446 AGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQT 505

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I GL    +  E Y + ++++ERG  PD  +Y  V+  LC+ G + DA  +  EM+
Sbjct: 506 YNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEML 565

Query: 332 HKGLLPNEYTYNSMIHGYCR------IDNLEE---------------------------- 357
            KG+ PN  +++ +I  +C+      +D + E                            
Sbjct: 566 QKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYSLTFNELLVGGEVVK 625

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           AK L +  LD+ +      Y  LI  LC   + D+A  +  ++  KG + D  ++  +I 
Sbjct: 626 AKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVID 685

Query: 418 GYCKEG 423
           G  K G
Sbjct: 686 GLGKRG 691



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/226 (27%), Positives = 111/226 (49%), Gaps = 4/226 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+++   +G+V     L + ++  G+ PE   FN LI   C+        EL   M  + 
Sbjct: 27  LLRSCTKEGRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGCLDDARELFDKMPEKG 86

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+ +++  ++ G C++    +   +  +++  G+ P+ V+Y T+I   CK G   DA 
Sbjct: 87  CEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAE 146

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM-LDKGYG---ETTVTYNTL 380
           K+  EM   GL P+  T+N+ I   C    + EA R+ ++M +D+  G      +TYN +
Sbjct: 147 KLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDEVLGLPQPNIITYNLM 206

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + G C  G  +EA  LFE+M       +  +YN  + G  + GK++
Sbjct: 207 LGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKLL 252



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 64/203 (31%), Positives = 105/203 (51%), Gaps = 14/203 (6%)

Query: 232 PENTA----FNKLISRFCEKKNFGRV---SELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           PEN      +N L+ R C K+  GRV   S L   MVA   +P+ +T+  +I  LC S  
Sbjct: 15  PENPPSIYLYNVLL-RSCTKE--GRVDCVSWLCKDMVASGVSPETYTFNVLIGLLCDSGC 71

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             +A  +F+ + E+G  P+   +  ++ G C+ G+     ++  EM   G  PN+  YN+
Sbjct: 72  LDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNT 131

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I  +C+    ++A++L  EM   G     VT+N  I+ LC  G+  EA  +F +M    
Sbjct: 132 LISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDE 191

Query: 405 IFR----DVITYNTLIQGYCKEG 423
           +      ++ITYN ++ G+CKEG
Sbjct: 192 VLGLPQPNIITYNLMLGGFCKEG 214



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/324 (21%), Positives = 141/324 (43%), Gaps = 37/324 (11%)

Query: 104 PDLVSCNVLFDSLVEA-RAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCA 160
           PDL+S + +   L +A R  +    F++  G +  P+S   +++I   C+ G I  AF  
Sbjct: 431 PDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRV 490

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
              +++ G   +++T+NS                          LI    +  ++ E Y 
Sbjct: 491 LKDMEKKGCNKTLQTYNS--------------------------LIMGLGSKNQIFEIYG 524

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ ++ E G+ P+ + +N ++S  CE         +L  M+ +  +P+  ++  +I   C
Sbjct: 525 LIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQKGISPNISSFSILIKAFC 584

Query: 281 KSRKRLEAYRVFN-DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           K+        +F   L   G+     +Y+   + L   G +  A++++   + +      
Sbjct: 585 KACDFSAVDEIFEIALNVCGH--KEALYSLTFNELLVGGEVVKAKELFETALDRSFDVGN 642

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE- 398
           + Y  +I   C+ + L++A  +  +++DKGY     ++  +I GL   G   EA  L E 
Sbjct: 643 FLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEK 702

Query: 399 --EMAQKGIFRDVITYNT--LIQG 418
             EMA +G  ++ +  N    IQG
Sbjct: 703 MMEMASEGKVKNKVHQNASCSIQG 726


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 168/388 (43%), Gaps = 51/388 (13%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD-------STGFSPNPNSL 141
           ++  F  +   +     + S N + + ++    +   ++F D       +   SPN  S 
Sbjct: 131 AVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSF 190

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            L I+ LC+ G ++ A   F  + E        T+ + + G  K +R D    L  ++  
Sbjct: 191 NLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQS 250

Query: 202 SG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          LI   C  G +S   +L+  +   G  P    +N LI   C K    +
Sbjct: 251 EGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDK 310

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY------------ 300
              LL  MV+    P++ TY  +INGL K R+ ++  R+   ++ERGY            
Sbjct: 311 AVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLIS 370

Query: 301 -----------------------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                                   P+ V+Y+ VI GLC+ G   +A+++   MI  G LP
Sbjct: 371 GLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLP 430

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N YTY+S++ G+ +    EEA ++ +EM + G       Y+ LI GLC  GR  EA  ++
Sbjct: 431 NVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVW 490

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +M   GI  D + Y+++I+G C  G +
Sbjct: 491 SKMLTIGIKPDTVAYSSMIKGLCGIGSM 518



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 155/345 (44%), Gaps = 21/345 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP  V  NVL D L +          +D+    G  PN  +    I  LC  G +++A
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKA 311

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++       +  T+ + + G +K  R     +L   + E GY         LI  
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISG 371

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK  E   L +++ E G  P    ++ +I   C +       E+L+ M++    P+
Sbjct: 372 LFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPN 431

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  ++ G  K+    EA +V+ ++ E G   +   Y+ +I GLC +G + +A  +W 
Sbjct: 432 VYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKEAMMVWS 491

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML---DKGYGETTVTYNTLIAGLC 385
           +M+  G+ P+   Y+SMI G C I +++ A +L+ EML   +       VTYN L+ GLC
Sbjct: 492 KMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLI------QGYCKEGK 424
           +      A  L   M  +G   DVIT NT +         C+EG+
Sbjct: 552 MQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGR 596



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 96/194 (49%)

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           N+  N +I+     +       ++++ +  N +P+  ++  VI  LCK      A  VF 
Sbjct: 152 NSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFR 211

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            + E+  +PD   Y T++ GLCK   + +A  +  EM  +G  P+   YN +I G C+  
Sbjct: 212 GMPEKKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKG 271

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +L    +L   M  KG     VTYNTLI GLCL G+ D+A  L E M       + +TY 
Sbjct: 272 DLSRVTKLVDNMFLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYG 331

Query: 414 TLIQGYCKEGKIVN 427
           TLI G  K+ + ++
Sbjct: 332 TLINGLVKQRRAMD 345


>gi|357121994|ref|XP_003562701.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Brachypodium distachyon]
          Length = 726

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  S ++L D L +        D L      G +P   S    +  LC +G +E A
Sbjct: 311 GLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELA 370

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F  F +L+E G       ++  L GC +    ++V  L++D++   +         LI A
Sbjct: 371 FELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYA 430

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +++   +   +L+ G+ P       L+  F +++        LH +      P+
Sbjct: 431 FCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQFGIVPN 490

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +INGLCK  K    + +F D+ +RGYVPDTV+Y+ +I    K   L +A +++ 
Sbjct: 491 LCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPEAFRLFH 550

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G  PN +TY S+I+G C  D L E   L K M+ +G     + Y +LI   C   
Sbjct: 551 KMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRS 610

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
               A  +F  M + G+  D   Y  LI G+ K
Sbjct: 611 NMKAALEIFRGMGKLGLSADAFLYTCLIGGFSK 643



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 145/308 (47%), Gaps = 9/308 (2%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   G  P+ +S  + +  LC+ G +   +    ++   G+  ++ +++S L G  + 
Sbjct: 305 DAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRA 364

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            + +L ++L+  L E G+         ++   C    +    +L   ++    VP+   +
Sbjct: 365 GKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNY 424

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             LI  FC  +N      +   M+    +P+  T   +++G  K R   EA+   + +++
Sbjct: 425 TSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLHKVRQ 484

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G VP+  MY  +I+GLCK+        ++ +MI +G +P+   Y+ +I  + +   L E
Sbjct: 485 FGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKALKLPE 544

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A RL  +MLD+G      TY +LI GLC   R  E   LF+ M  +G+  D I Y +LI 
Sbjct: 545 AFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIV 604

Query: 418 GYCKEGKI 425
            YCK   +
Sbjct: 605 CYCKRSNM 612



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/337 (24%), Positives = 153/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P+  +       L   R    A +FL       NP +   +   IQ  C  G ++EA
Sbjct: 241 GVKPNAATYGTYLYGLSRTRQVASAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEA 300

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHD-----LIESGYLIQA 208
              F  +K+ G+     +++  + G  K    +   DL+ ++  +     L+    L+  
Sbjct: 301 IEVFDAMKKGGLVPDTHSYSILVDGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHG 360

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GKV   +EL R++ E G   ++  ++ +++  C+  N   V +L + MV  N  PD
Sbjct: 361 LCRAGKVELAFELFRRLEEQGFKHDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPD 420

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            + Y  +I   C+ R   +A  VF  + + G  P+ V  T ++ G  K   + +A     
Sbjct: 421 AYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMIDEAFLFLH 480

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++   G++PN   Y  +I+G C+++  +    +  +M+ +GY   TV Y+ +I       
Sbjct: 481 KVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGYVPDTVVYSIIIDSFVKAL 540

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  EA+ LF +M  +G   +V TY +LI G C + ++
Sbjct: 541 KLPEAFRLFHKMLDEGTKPNVFTYTSLINGLCHDDRL 577



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/314 (24%), Positives = 140/314 (44%), Gaps = 29/314 (9%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           H+ F PD  +   L  +    R    A+   + +  +G SPN  +  + +    +  +I+
Sbjct: 414 HHNFVPDAYNYTSLIYAFCRHRNLTDALGVFELMLDSGVSPNVVTCTILVDGFGKERMID 473

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
           EAF    K+++ G+  ++  +   + G  K++++D VW ++ D+I+ GY           
Sbjct: 474 EAFLFLHKVRQFGIVPNLCMYRVIINGLCKVNKSDHVWGIFADMIKRGY----------- 522

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
                          VP+   ++ +I  F +         L H M+     P+ FTY  +
Sbjct: 523 ---------------VPDTVVYSIIIDSFVKALKLPEAFRLFHKMLDEGTKPNVFTYTSL 567

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           INGLC   +  E   +F  +   G  PD ++YT++I   CK   +  A +++  M   GL
Sbjct: 568 INGLCHDDRLPEVVTLFKHMIWEGLTPDRILYTSLIVCYCKRSNMKAALEIFRGMGKLGL 627

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             + + Y  +I G+ ++  ++ A+ L +EM +KG   + VTY  LI G    G   +A  
Sbjct: 628 SADAFLYTCLIGGFSKVLAMDGAQCLMEEMTNKGLTPSVVTYTNLIIGYFKIGDERKANM 687

Query: 396 LFEEMAQKGIFRDV 409
            +  M Q GI  D 
Sbjct: 688 TYNSMLQAGITPDA 701



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 17/291 (5%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW--KLYHDLIES 202
           I+   E  + E+A   +++ K++GV   ++  N  LL C+ ++R  +++   L+ D+  S
Sbjct: 148 IRIFVELSMFEDALLTYTEAKKVGV--ELQLCN-FLLKCL-VERNQIIYARSLFDDMKSS 203

Query: 203 G---------YLIQAFCNDGKV--SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           G          L+ A+ +  ++  +E +ELL ++   G+ P    +   +      +   
Sbjct: 204 GPSPNVYSYSVLMSAYTHGDRLYLAEAFELLSEMEMKGVKPNAATYGTYLYGLSRTRQVA 263

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
                L  +  R    + + +  VI G C+  +  EA  VF+ +K+ G VPDT  Y+ ++
Sbjct: 264 SAWNFLQMLCQRGNPCNTYCFNAVIQGFCREGQVQEAIEVFDAMKKGGLVPDTHSYSILV 323

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK G +     +  EM   G+ P   +Y+S++HG CR   +E A  L + + ++G+ 
Sbjct: 324 DGLCKQGDVLTGYDLLVEMARNGIAPTLVSYSSLLHGLCRAGKVELAFELFRRLEEQGFK 383

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
              + Y+ ++ G C H   +    L+ +M       D   Y +LI  +C+ 
Sbjct: 384 HDHIVYSIILNGCCQHLNIEVVCDLWNDMVHHNFVPDAYNYTSLIYAFCRH 434


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 168/353 (47%), Gaps = 15/353 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD------STGFSPNPNSLE 142
           +I  F  +   +   P + S N + + +++A     A++F +           PN  S  
Sbjct: 126 AIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFN 185

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-IE 201
           L I+ +C+ GL++ A   F ++          T+ + + G  K+DR D    L  ++ IE
Sbjct: 186 LIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIE 245

Query: 202 SGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
             +        LI   C  G  +   +L+  +   G VP    +N LI   C K    + 
Sbjct: 246 GCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 305

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             LL  MV+    P+  TY  +INGL K  + L+  RV   ++ERGY+ +  +Y+ ++ G
Sbjct: 306 LSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSG 365

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L K G   +A +++ E + KG   N   Y++++ G CR    +EA ++  EM DKG    
Sbjct: 366 LFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPN 425

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             T+++L+ G    G + +A  ++++M +     + + Y+ LI G CK+GK++
Sbjct: 426 AFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVM 478



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/199 (30%), Positives = 99/199 (49%), Gaps = 3/199 (1%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVAR---NRAPDNFTYEEVINGLCKSRKRLEA 288
           P   +FN +++   +     R  E  + +V     N  P+  ++  +I  +CK      A
Sbjct: 141 PTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNA 200

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             +F ++  R  VPD   Y T++ GLCK+  + +A  +  EM  +G  P+  T+N +I+G
Sbjct: 201 IELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLING 260

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+  +     +L   M  KG     VTYNTLI GLCL G+ D+A  L + M       +
Sbjct: 261 LCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPN 320

Query: 409 VITYNTLIQGYCKEGKIVN 427
            +TY T+I G  K+G+ ++
Sbjct: 321 EVTYGTIINGLVKQGRALD 339



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 147/360 (40%), Gaps = 35/360 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L   L        A+  LD   S+   PN  +    I  L + G   + 
Sbjct: 281 GCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDG 340

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 ++E G   +   ++  + G  K  +++   +L+ + ++ G          L+  
Sbjct: 341 ARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDG 400

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C D K  E  ++L ++ + G  P    F+ L+  F E  N  +  E+   M   N A +
Sbjct: 401 LCRDRKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAEN 460

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLCK  K +EA  V+  +   G  PD V Y+++I GLC  G + +A K++ 
Sbjct: 461 EVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYN 520

Query: 329 EMI--HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT------- 379
           EM+       P+  TYN + +  C+  ++  A  L   MLD+G     VT N        
Sbjct: 521 EMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLRE 580

Query: 380 --------------LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                         L+  L    R   A  + E M QK +     T+  ++   C+  KI
Sbjct: 581 KLDPPQDGAKFLDELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELCQPKKI 640


>gi|357167837|ref|XP_003581356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Brachypodium distachyon]
          Length = 524

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 149/302 (49%), Gaps = 11/302 (3%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK-TWNSALLGCIKIDRTDLVW 193
           SPN  +    I   C  G ++       +++E G     K T+ + + G  K+ + +   
Sbjct: 144 SPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDAT 203

Query: 194 KLYHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           K++ +++  G           LI  +C+ G +        ++++ G+      +N  +  
Sbjct: 204 KVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHT 263

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
              +        L+  M  +  APD FTY  +ING CK  K  +A ++F  +  +G    
Sbjct: 264 LFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRAT 323

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT++IH L   G + +  +++ + + +G+ P+ + YN++I+ +C   +++ A  +  
Sbjct: 324 VVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMG 383

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  K      VTYNTL+ GLCL GR DEA  L EEM ++GI  D+++YNTLI GY  +G
Sbjct: 384 EMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKG 443

Query: 424 KI 425
            I
Sbjct: 444 DI 445



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 172/400 (43%), Gaps = 15/400 (3%)

Query: 36  SQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQW 95
           S   +  + + +C  T  KP     LL  +PS N             +  V   I   + 
Sbjct: 115 STTTFNIMLRHLC--TAGKPVRALELLRQMPSPNAVTYNTVIAGFCARGRVQAGIEIMRE 172

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCES 151
           +    G +PD  +   +     +      A KV  + L      PN       I   C+ 
Sbjct: 173 MRERGGIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQ 232

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           G +E A     ++ + GV  ++ T+N  +       R      L  ++ E G        
Sbjct: 233 GNLEVALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTY 292

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI  +C +GK  +  ++   ++  G+      +  LI     K        L +  V 
Sbjct: 293 NILINGYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVR 352

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R   PD F Y  +IN  C       A+ +  +++++   PD V Y T++ GLC +G L +
Sbjct: 353 RGIRPDLFMYNALINSHCTGGDMDRAFEIMGEMEKKRITPDDVTYNTLMRGLCLLGRLDE 412

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           AR +  EM  +G+ P+  +YN++I GY    ++++A ++  EM+ KG+  T +TYN +I 
Sbjct: 413 ARGLIEEMTKRGIQPDLVSYNTLISGYSMKGDIKDAVKVRDEMMGKGFNPTLLTYNAMIK 472

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           GLCL+G+  +A  L +EM   GI  D  TY +LI+G   E
Sbjct: 473 GLCLNGQGGDAEDLVKEMVGNGITPDDSTYISLIEGLTTE 512



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 160/336 (47%), Gaps = 14/336 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           SP+ V+ N +          +  ++ +    +  G +P+  +    I   C+ G +E+A 
Sbjct: 144 SPNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDAT 203

Query: 159 CAFSK-LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
             F + L E  V  +   +N+ + G       ++  +   ++++ G           +  
Sbjct: 204 KVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEVALRYRGEMVDRGVSMTVATYNLFVHT 263

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G+ +E + L+ ++ E GL P+   +N LI+ +C++    +  ++   MV +     
Sbjct: 264 LFMEGRAAEAHALVEEMGEKGLAPDAFTYNILINGYCKEGKEKKAMKMFEVMVGKGIRAT 323

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+ L       E  R+FND   RG  PD  MY  +I+  C  G +  A ++  
Sbjct: 324 VVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRPDLFMYNALINSHCTGGDMDRAFEIMG 383

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K + P++ TYN+++ G C +  L+EA+ L +EM  +G     V+YNTLI+G  + G
Sbjct: 384 EMEKKRITPDDVTYNTLMRGLCLLGRLDEARGLIEEMTKRGIQPDLVSYNTLISGYSMKG 443

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              +A  + +EM  KG    ++TYN +I+G C  G+
Sbjct: 444 DIKDAVKVRDEMMGKGFNPTLLTYNAMIKGLCLNGQ 479



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 119/258 (46%), Gaps = 41/258 (15%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C  GK     ELLRQ+      P    +N +I+ FC +       E++  M  R 
Sbjct: 122 MLRHLCTAGKPVRALELLRQMPS----PNAVTYNTVIAGFCARGRVQAGIEIMREMRERG 177

Query: 265 R-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWL-- 320
             APD +TY  VI+G CK  K  +A +VF+++   G V P+ VMY  +I G C  G L  
Sbjct: 178 GIAPDKYTYATVISGWCKVGKVEDATKVFDEMLTEGKVEPNAVMYNALIGGYCDQGNLEV 237

Query: 321 ---------------------------------GDARKMWFEMIHKGLLPNEYTYNSMIH 347
                                             +A  +  EM  KGL P+ +TYN +I+
Sbjct: 238 ALRYRGEMVDRGVSMTVATYNLFVHTLFMEGRAAEAHALVEEMGEKGLAPDAFTYNILIN 297

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           GYC+    ++A ++ + M+ KG   T VTY +LI  L + G   E   LF +  ++GI  
Sbjct: 298 GYCKEGKEKKAMKMFEVMVGKGIRATVVTYTSLIHALSMKGMVQETDRLFNDAVRRGIRP 357

Query: 408 DVITYNTLIQGYCKEGKI 425
           D+  YN LI  +C  G +
Sbjct: 358 DLFMYNALINSHCTGGDM 375



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ++ L  S     A+ +F D+        T  +  ++  LC  G    A ++  +M     
Sbjct: 88  LHPLLSSLPPAPAFVLFADIFRLRLPLSTTTFNIMLRHLCTAGKPVRALELLRQMPS--- 144

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAY 394
            PN  TYN++I G+C    ++    + +EM ++ G      TY T+I+G C  G+ ++A 
Sbjct: 145 -PNAVTYNTVIAGFCARGRVQAGIEIMREMRERGGIAPDKYTYATVISGWCKVGKVEDAT 203

Query: 395 HLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
            +F+EM  +G +  + + YN LI GYC +G +
Sbjct: 204 KVFDEMLTEGKVEPNAVMYNALIGGYCDQGNL 235


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+    N+L   ++ +     A +  D     G  P   +    +  +C++  +  A
Sbjct: 109 GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNNA 168

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + G+   + T+ + + G  K  R     +++ ++ E G          LI A
Sbjct: 169 NALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDA 228

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G V+ G EL  ++   G+  +  A+N L++ FC  ++    ++++  M      PD
Sbjct: 229 HCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPD 288

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  +   A  +  ++ + G   D V YT +I GL K G   DA ++  
Sbjct: 289 KVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILC 348

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  GL P+  TY  +I  +C+  +++   +  KEM +KG     VTYN ++ G C  G
Sbjct: 349 EMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLG 408

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +   A  L   M   G+  + ITYN L+ G+CK GK+
Sbjct: 409 QMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHGKV 445



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/322 (27%), Positives = 150/322 (46%), Gaps = 12/322 (3%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           S+ EA AF   +  LD+ G  P      + ++ +  SG +  A   F ++   GV  ++ 
Sbjct: 94  SVPEAYAFY--LHLLDA-GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVV 150

Query: 175 TWNSALLGCIKIDRTD-------LVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQV 225
           T+N+ + G  K    +       L+ K  +  D+   G  IQ  C  G++ +  E+  ++
Sbjct: 151 TFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEM 210

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
            E GL P       LI   C++ +     EL   M  R    D   Y  ++NG C+ R  
Sbjct: 211 CERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNGFCRVRDM 270

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
             A  +  ++++ G  PD V YTT+I G CK G L  A +M  EM  +G+  ++ TY ++
Sbjct: 271 KAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL 330

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I G  +     +A+R+  EM++ G      TY  +I   C +G     +   +EM  KG 
Sbjct: 331 ISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKGK 390

Query: 406 FRDVITYNTLIQGYCKEGKIVN 427
              ++TYN ++ G+C  G++ N
Sbjct: 391 NPGIVTYNVVMNGFCSLGQMKN 412



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 157/334 (47%), Gaps = 15/334 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+ N L   + +A     A      +   G +P+  +   +IQ LC++G I++A
Sbjct: 144 GVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDA 203

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRT---DLVWKLY-----HDLIESGYLIQA 208
              F ++ E G+  +     + +   C + D T   +L W++       DL+    L+  
Sbjct: 204 MEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVNG 263

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    +    +++ ++ +DGL P+   +  LI   C++       E+   M     A D
Sbjct: 264 FCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALD 323

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  +I+GL K+ + ++A R+  ++ E G  PD   YT VI   CK G +    K   
Sbjct: 324 DVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLK 383

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM +KG  P   TYN +++G+C +  ++ A  L   ML+ G     +TYN L+ G C HG
Sbjct: 384 EMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIGVCPNDITYNILLDGHCKHG 443

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +  +   L    + KG+  D   Y +LI  + K+
Sbjct: 444 KVRDTEEL---KSAKGMVSDFGVYTSLINEFVKK 474



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 17/237 (7%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLC 149
            +W  +  G   DLV+ N L +     R  K A D ++     G  P+  +    I   C
Sbjct: 241 LRWEMATRGVKADLVAYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCC 300

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           + G ++ A     ++ + GV     T+ + + G  K  R+    ++  +++E+G      
Sbjct: 301 KEGELDTAMEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNT 360

Query: 204 ---YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               +I AFC +G V  G++ L+++   G  P    +N +++ FC          LL+ M
Sbjct: 361 TYTMVIDAFCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAM 420

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCK 316
           +     P++ TY  +++G CK  K     R   +LK  +G V D  +YT++I+   K
Sbjct: 421 LNIGVCPNDITYNILLDGHCKHGK----VRDTEELKSAKGMVSDFGVYTSLINEFVK 473



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 55/110 (50%), Gaps = 3/110 (2%)

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G L D   +    + +G+      ++ +++   R+ ++ EA   +  +LD G       +
Sbjct: 61  GLLPDGCSLLLLALRRGIRVPMPAWSDLMN---RLPSVPEAYAFYLHLLDAGVPPEARQF 117

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           N L+  +   G+   A ++F+EM ++G+   V+T+NTL+ G CK   + N
Sbjct: 118 NMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTLMSGMCKASDLNN 167


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 147/301 (48%), Gaps = 13/301 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+    +  I  L   G + EA     ++  MG    + T+N  +LG   + R    
Sbjct: 207 GCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREA 266

Query: 193 WKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L            ++  G+L+Q  C   +  E   +L ++ E  +V  NT     ++ 
Sbjct: 267 ARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVVMLNTVIRGCLT- 325

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
              +    R +EL   M ++   PD  TY  +++GLCK  +   A R+ ++++E+G  P+
Sbjct: 326 ---EGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPN 382

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y+T++H  C+ G   DAR M  +M+ KG   N   YN +I+  C+   L++A RL +
Sbjct: 383 IVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQ 442

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  +G      TYNT+I  LC +   +EA H+F  + ++G+  + ITYNTLI    + G
Sbjct: 443 EMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNG 502

Query: 424 K 424
           +
Sbjct: 503 R 503



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 143/309 (46%), Gaps = 13/309 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D + + G  P+  +    +Q LC +   +EA     +L E+ V       N+ + GC+ 
Sbjct: 270 VDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEVNVV----MLNTVIRGCLT 325

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             +     +LY  +   G          L+   C  G+      +L ++ E G  P    
Sbjct: 326 EGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVT 385

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           ++ L+  FC    +     +L  M+A+  + ++  Y  +I  LCK  K  +A R+  ++K
Sbjct: 386 YSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMK 445

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +G  PD   Y T+I+ LC    + +A  ++  +I +G++ N  TYN++IH   R    +
Sbjct: 446 SQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQ 505

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           E  RL  EML  G     ++YN LI  LC  G  D +  L EEM  KGI  +  +YN LI
Sbjct: 506 EGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLI 565

Query: 417 QGYCKEGKI 425
              CK GK+
Sbjct: 566 NELCKAGKV 574



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 152/312 (48%), Gaps = 10/312 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           ARA ++  + + S G  P+ ++  + +  LC+ G    A     +++E G   +I T+++
Sbjct: 330 ARATEL-YEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYST 388

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            L    +    D    +   ++  G+         +I A C DGK+ +   L++++   G
Sbjct: 389 LLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQG 448

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             P+   +N +I   C          +   ++      +  TY  +I+ L ++ +  E  
Sbjct: 449 CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGL 508

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           R+ +++   G   D + Y  +I  LCK G +  +  +  EM+ KG+ PN ++YN +I+  
Sbjct: 509 RLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINEL 568

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   + +A  L KEML++G     VTYNTLI GLC  G T  A +L E++  + +  D+
Sbjct: 569 CKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDI 628

Query: 410 ITYNTLIQGYCK 421
           +TYN LI  +CK
Sbjct: 629 VTYNILISWHCK 640



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 152/335 (45%), Gaps = 16/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYI---QCLCESGLIEEA 157
           G  P +V+   L   L   R    A   L   G  P  N + L      CL E G +  A
Sbjct: 277 GCMPSVVTYGFLLQGLCRTRQADEACAML---GRLPEVNVVMLNTVIRGCLTE-GKLARA 332

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              +  +   G    + T++  + G  K+ R     ++  ++ E G          L+ +
Sbjct: 333 TELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHS 392

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G   +   +L Q+L  G    +  +N +I   C+     + + L+  M ++   PD
Sbjct: 393 FCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPD 452

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I  LC +    EA  +F +L E G V + + Y T+IH L + G   +  ++  
Sbjct: 453 ICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLAS 512

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G   +  +YN +I   C+  N++ +  L +EM+ KG      +YN LI  LC  G
Sbjct: 513 EMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAG 572

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  +A  L +EM  +G+  D++TYNTLI G CK G
Sbjct: 573 KVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVG 607



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 12/293 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+ + L  S      +  A   LD   + GFS N       I  LC+ G +++A
Sbjct: 378 GCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQA 437

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++K  G    I T+N+ +      D  +    ++ +LIE G          LI A
Sbjct: 438 TRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHA 497

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G+  EG  L  ++L  G   +  ++N LI   C++ N  R   LL  MV +   P+
Sbjct: 498 LLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPN 557

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           NF+Y  +IN LCK+ K  +A  +  ++  +G  PD V Y T+I+GLCK+GW   A  +  
Sbjct: 558 NFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLE 617

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           ++ ++ + P+  TYN +I  +C++  L++A  L  + +  G      T+  ++
Sbjct: 618 KLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMV 670



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 113/254 (44%), Gaps = 31/254 (12%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G   +A C  G+  +   LLR +   G VP+   +  +I     +      + LL  M+ 
Sbjct: 181 GVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLL 240

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----- 317
              A D  T+ +++ GLC   +  EA R+ + +  +G +P  V Y  ++ GLC+      
Sbjct: 241 MGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADE 300

Query: 318 --------------------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
                                     G L  A +++  M  KG  P+ +TY+ ++HG C+
Sbjct: 301 ACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCK 360

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +     A R+  EM +KG     VTY+TL+   C +G  D+A  + ++M  KG   +   
Sbjct: 361 LGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQG 420

Query: 412 YNTLIQGYCKEGKI 425
           YN +I   CK+GK+
Sbjct: 421 YNGIIYALCKDGKL 434



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/334 (23%), Positives = 149/334 (44%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + ++L   L +   F  A+  LD     G +PN  +    +   C +G+ ++A
Sbjct: 343 GCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDA 402

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G   + + +N  +    K  + D   +L  ++   G          +I  
Sbjct: 403 RAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYH 462

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN+  + E   + R ++E+G+V     +N LI        +     L   M+      D
Sbjct: 463 LCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLD 522

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I  LCK      +  +  ++  +G  P+   Y  +I+ LCK G + DA ++  
Sbjct: 523 VISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKAGKVRDALELSK 582

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+++GL P+  TYN++I+G C++     A  L +++ ++      VTYN LI+  C   
Sbjct: 583 EMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVR 642

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             D+A  L ++    GI  +  T+  ++Q + ++
Sbjct: 643 LLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQ 676



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 90/195 (46%), Gaps = 4/195 (2%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P   ++N ++S             L   M+     P  FT+      LC+  +  +A  +
Sbjct: 140 PSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALAL 199

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              +   G VPD V+Y TVIH L   G + +A  +  EM+  G   +  T+N ++ G C 
Sbjct: 200 LRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCG 259

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +  + EA RL   M+ +G   + VTY  L+ GLC   + DEA  +   + +     +V+ 
Sbjct: 260 LGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAMLGRLPEV----NVVM 315

Query: 412 YNTLIQGYCKEGKIV 426
            NT+I+G   EGK+ 
Sbjct: 316 LNTVIRGCLTEGKLA 330



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 92/209 (44%), Gaps = 4/209 (1%)

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           ++   L R++L D + P    F       C     G    LL  M      PD   Y+ V
Sbjct: 159 ADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRAGDALALLRGMARHGCVPDAVLYQTV 218

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ L       EA  + +++   G   D   +  ++ GLC +G + +A ++   M+ +G 
Sbjct: 219 IHALVAQGGVAEAAMLLDEMLLMGCAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGC 278

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           +P+  TY  ++ G CR    +EA      ML +      V  NT+I G    G+   A  
Sbjct: 279 MPSVVTYGFLLQGLCRTRQADEA----CAMLGRLPEVNVVMLNTVIRGCLTEGKLARATE 334

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           L+E M  KG   DV TY+ L+ G CK G+
Sbjct: 335 LYEMMGSKGCPPDVHTYSILMHGLCKLGR 363



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 52/172 (30%), Positives = 78/172 (45%), Gaps = 1/172 (0%)

Query: 251 GRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
           GR   LL  M  R     +F +Y  V++ L ++    +A  ++  +      P T  +  
Sbjct: 123 GRALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGV 182

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
               LC++G  GDA  +   M   G +P+   Y ++IH       + EA  L  EML  G
Sbjct: 183 AARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMG 242

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                 T+N L+ GLC  GR  EA  L + M  +G    V+TY  L+QG C+
Sbjct: 243 CAADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCR 294



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 1/139 (0%)

Query: 288 AYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           A  + + +  R  V P    Y  V+  L +     DA  ++  M+   + P  +T+    
Sbjct: 125 ALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 184

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
              CR+    +A  L + M   G     V Y T+I  L   G   EA  L +EM   G  
Sbjct: 185 RALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGCA 244

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DV T+N L+ G C  G++
Sbjct: 245 ADVNTFNDLVLGLCGLGRV 263


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 186/408 (45%), Gaps = 49/408 (12%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA---RAFK 123
           S N N  + F E +K+ ++ LL ++FF++  +H   +    + ++L  +L +     + K
Sbjct: 71  SRNLNPSIAF-EVIKRFSDPLLGLKFFEFSRTHLSINHTFNTYDLLMRNLCKVGLNDSAK 129

Query: 124 VAMDFLDSTGFSPNPNSLELYIQC-----------------------------------L 148
           +  D + S G  P+ + LEL +                                     L
Sbjct: 130 IVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNML 189

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DL 199
            +  L++EA   F +  E      + ++N  + G  +I   D  ++ +          D+
Sbjct: 190 VKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDI 249

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQ-VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +    LI  FC   ++S+G++LL++ +L  G+ P+   +  +IS +C+  +    SEL  
Sbjct: 250 VSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFD 309

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            MV+    P++FT+  +I+G  K      A  ++  +   G +PD V +T++I G C+ G
Sbjct: 310 EMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREG 369

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +    K+W EM  + L PN YTY  +I+  C+ + + EA+   + +           YN
Sbjct: 370 EVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYN 429

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +I G C  G+ DEA  +  EM +K    D IT+  LI G C +G++V
Sbjct: 430 PVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMV 477



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 150/355 (42%), Gaps = 23/355 (6%)

Query: 65  IPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           +  F +N+ L     L +QN V  ++  F+  H    F PD+ S N+L   L        
Sbjct: 177 VSPFVYNNLL---NMLVKQNLVDEAVLLFRE-HLEPYFVPDVYSFNILIRGLCRIGEIDK 232

Query: 125 AMDFLDSTG-FS--PNPNSLELYIQCLCESGLIEEAFCAFSKLKE----MGVFGSIKTWN 177
           A +F  + G F   P+  S    I   C    + E       LKE     GV   + T+ 
Sbjct: 233 AFEFFQNMGNFGCFPDIVSYNTLINGFCR---VNEISKGHDLLKEDMLIKGVSPDVITYT 289

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLED 228
           S + G  K+       +L+ +++ SG          LI  F   G +     +  ++L  
Sbjct: 290 SIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLL 349

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G +P+   F  LI  +C +    +  +L   M  RN +P+ +TY  +IN LCK  +  EA
Sbjct: 350 GCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREA 409

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                 LK    VP   +Y  VI G CK G + +A  +  EM  K   P++ T+  +I G
Sbjct: 410 RNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIG 469

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            C    + EA     +M++       +T N+LI+ L   G  +EA  + +   QK
Sbjct: 470 NCMKGRMVEAISTFYKMIEINCVPDEITINSLISCLLKAGMPNEASQIKQAALQK 524


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M      PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM+ KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +   L  ++L+ GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML+ G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 160/333 (48%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + +   ++  +AR F  A    +       + N  +  + I  LC SG +EEA
Sbjct: 240 GIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEA 299

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F    ++ + G+     T+ + + G  K  R      L  ++  SG          L+  
Sbjct: 300 FGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDG 359

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK +E +++L +++  G+ P    ++ LI   C+    GR S+LL+ M+     PD
Sbjct: 360 FMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPD 419

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  ++ G  +   +  A+ + N+++  G +P+   Y  +I+GLC+ G   +A  +  
Sbjct: 420 TFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLE 479

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI +GL PN + Y  +I G+ +  ++  A    + M           YN+LI GL   G
Sbjct: 480 EMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVG 539

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           R +EA   + ++ ++G+  D  TY+ LI GYCK
Sbjct: 540 RIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 572



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 154/330 (46%), Gaps = 12/330 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +  ++ + L +    K A + L+   S G  PN       I    + G I  A
Sbjct: 450 GILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLA 509

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
             +   + +  V   +  +NS + G   + R +   + Y  + + G          LI  
Sbjct: 510 CESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHG 569

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C    + +  +LL+Q+L  GL P    +  L+  + +  +  +VS +L +M+     PD
Sbjct: 570 YCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPD 629

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  Y  VI  L +S     A+ V  ++++ G VPD  +Y+++I GLCKM  +  A  +  
Sbjct: 630 NHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLD 689

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +GL P    YN++I G+CR  ++  A+ +   +L KG     VTY  LI G C +G
Sbjct: 690 EMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNG 749

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
              +A+ L+++M  +GI  D   YN L  G
Sbjct: 750 DITDAFDLYKDMLDRGIAPDAFVYNVLATG 779



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 147/328 (44%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P    CN L   L+ A A ++      F++  G  P+  +   +++  C++   + A
Sbjct: 205 GLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAA 264

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F +++      +  T+N                           +I   C  G V E
Sbjct: 265 KKVFEEMRRRDCAMNEVTYN--------------------------VMISGLCRSGAVEE 298

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            +    ++++ GL P+   +  L++  C+         LL  M      P+   Y  +++
Sbjct: 299 AFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVD 358

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K  K  EA+ + N++   G  P+ +MY  +I GLCK+G LG A K+  EMI  G  P
Sbjct: 359 GFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRP 418

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +TY+ ++ G+ +  + + A  L  EM + G      TY  +I GLC +G + EA +L 
Sbjct: 419 DTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLL 478

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EEM  +G+  +   Y  LI G+ KEG I
Sbjct: 479 EEMISEGLKPNAFMYAPLIIGHSKEGHI 506



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 145/306 (47%), Gaps = 9/306 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           ++G  PN  +  + I  LC++G  +EA     ++   G+  +   +   ++G  K     
Sbjct: 448 NSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGHIS 507

Query: 191 LVWKLYHDLIESGYLIQAFCND---------GKVSEGYELLRQVLEDGLVPENTAFNKLI 241
           L  +   ++ ++  L   FC +         G++ E  E   QV + GLVP+   ++ LI
Sbjct: 508 LACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLI 567

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             +C+ +N  +  +LL  M+     P+  TY +++ G  KS    +   +   +   G  
Sbjct: 568 HGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDK 627

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD  +Y  VI  L +   +  A  +  E+   GL+P+ + Y+S+I G C++ ++E+A  L
Sbjct: 628 PDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGL 687

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             EM  +G     V YN LI G C  G    A ++F+ +  KG+  + +TY  LI G CK
Sbjct: 688 LDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCK 747

Query: 422 EGKIVN 427
            G I +
Sbjct: 748 NGDITD 753



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 159/369 (43%), Gaps = 47/369 (12%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEE 156
           YG SPD  +   L + L +    K A   LD    +G  PN       +    + G   E
Sbjct: 309 YGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEGKAAE 368

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           AF   +++   GV  +   +++ + G  KI +     KL +++I+ G+         L+Q
Sbjct: 369 AFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQ 428

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                      +ELL ++   G++P    +  +I+  C+         LL  M++    P
Sbjct: 429 GHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKP 488

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + F Y  +I G  K      A     ++ +   +PD   Y ++I GL  +G + +A + +
Sbjct: 489 NAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEEYY 548

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL--- 384
            ++  +GL+P+E+TY+ +IHGYC+  NLE+A +L ++ML+ G      TY  L+ G    
Sbjct: 549 AQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADTYTDLLEGYFKS 608

Query: 385 -----------CLHGRTDE---------------------AYHLFEEMAQKGIFRDVITY 412
                       + G  D+                     A+ +  E+ + G+  D+  Y
Sbjct: 609 NDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIY 668

Query: 413 NTLIQGYCK 421
           ++LI G CK
Sbjct: 669 SSLISGLCK 677



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 153/334 (45%), Gaps = 13/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDL   N L   L      + A ++   +   G  P+  +    I   C++  +E+A   
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
             ++   G+  +  T+   L G  K +  + V  +   ++ SG          +I+    
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 642

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +   + +L +V ++GLVP+   ++ LIS  C+  +  +   LL  M      P    
Sbjct: 643 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVC 702

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G C+S     A  VF+ +  +G +P+ V YT +I G CK G + DA  ++ +M+
Sbjct: 703 YNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDML 762

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ P+ + YN +  G     +LE+A  L +EM ++GY   ++ ++TL+ G C  GR  
Sbjct: 763 DRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSL-FSTLVRGFCKRGRLQ 821

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E   L   M  + I  +  T   +I  + K GK+
Sbjct: 822 ETEKLLHVMMDREIVPNAQTVENVITEFGKAGKL 855



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 66/221 (29%), Positives = 107/221 (48%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  +  +G V    +++  + + GL P     N L+           V +L   M    
Sbjct: 181 LVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAG 240

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD +TY   +   CK+R    A +VF +++ R    + V Y  +I GLC+ G + +A 
Sbjct: 241 IPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAF 300

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
               EM+  GL P+ +TY ++++G C+   L+EAK L  EM   G     V Y TL+ G 
Sbjct: 301 GFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGF 360

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              G+  EA+ +  EM   G+  + I Y+ LI+G CK G++
Sbjct: 361 MKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQL 401



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/285 (22%), Positives = 123/285 (43%), Gaps = 25/285 (8%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
            +G  P+ +   + I+ L  S  +E AF   +++++ G+   +  ++S + G  K+   +
Sbjct: 623 GSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADME 682

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
               L  ++ + G          LI  FC  G +S    +   +L  GL+P    +  LI
Sbjct: 683 KAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALI 742

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+  +     +L   M+ R  APD F Y  +  G   +    +A  +  ++  RGY 
Sbjct: 743 DGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA 802

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
               +++T++ G CK G L +  K+   M+ + ++PN  T  ++I  + +   L EA R+
Sbjct: 803 -HVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRV 861

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
             E+  K   +++               TD    LF +M  KG+ 
Sbjct: 862 FAELQQKKASQSS---------------TDRFSLLFTDMINKGLI 891



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 28/249 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL   + L   L +    + A+  LD     G  P        I   C SG I  A
Sbjct: 660 GLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRA 719

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGYLIQAF------- 209
              F  +   G+  +  T+ + + G C   D TD  + LY D+++ G    AF       
Sbjct: 720 RNVFDSILAKGLLPNCVTYTALIDGNCKNGDITD-AFDLYKDMLDRGIAPDAFVYNVLAT 778

Query: 210 -CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+D    E    L + + +      + F+ L+  FC++       +LLH M+ R   P+
Sbjct: 779 GCSDAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREIVPN 838

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T E VI    K+ K  EA+RVF +L+++     +    ++               ++ 
Sbjct: 839 AQTVENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSL---------------LFT 883

Query: 329 EMIHKGLLP 337
           +MI+KGL+P
Sbjct: 884 DMINKGLIP 892



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P   AF +L +  C   +F + + LLH M+  +  P       V+  +          R 
Sbjct: 113 PSADAFARLAASLCAASHFPQANGLLHQMILAHPHP-----PLVLASI---------QRA 158

Query: 292 FNDLKERGYVPDTVMYTTVIHGLC----KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
             D   R   P     T V+  L     K G +  A ++   M   GL P     N ++ 
Sbjct: 159 IQDSDARSPSPSPSHSTAVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNGLLK 218

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
              R D +E   +L   M   G      TY+T +   C     D A  +FEEM ++    
Sbjct: 219 DLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAM 278

Query: 408 DVITYNTLIQGYCKEGKI 425
           + +TYN +I G C+ G +
Sbjct: 279 NEVTYNVMISGLCRSGAV 296


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 171/368 (46%), Gaps = 34/368 (9%)

Query: 88  LSIRFFQWLHSH-----YGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPN 139
           L+ +  + LH H      GF  + VS  +L + L    E RA    +  +D    + N  
Sbjct: 130 LNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVLRKIDGKLVNTNVV 189

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                I  LC+  L+ EA+  +S++    V   + T+++ + G   + +    + L+H++
Sbjct: 190 MYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEM 249

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLED-----------------GLVPE 233
           + +           L+ A C +G   E   +L  ++++                  + P+
Sbjct: 250 VLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPD 309

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             ++  +I R C+ K       L + M  +   PD  TY  +I+GLCKS +   A+ + +
Sbjct: 310 VHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLD 369

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +  RG   D + YT+ +H LCK   +  A  +  ++  +G+ PN  TYN +I G C+  
Sbjct: 370 QMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEG 429

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             E A+ + +++L KGY  T  TYN +I GLCL G  DEA  L E+M   G   DV+TY 
Sbjct: 430 RFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYE 489

Query: 414 TLIQGYCK 421
           T+I+   K
Sbjct: 490 TIIRALFK 497



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 172/377 (45%), Gaps = 38/377 (10%)

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-------GFSP 136
           NN  ++I  +  L  +   +P +V+    F++++        MDF  S        G+ P
Sbjct: 62  NNYPIAISLYHRLQLN-AITPSIVT----FNTVINCYCHLGEMDFAFSVLAKILKMGYHP 116

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +L   I+ LC +G + EA      +   G   +  ++   + G  K+  T    ++ 
Sbjct: 117 DTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAALQVL 176

Query: 197 H---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
                     +++    +I + C +  V+E YEL  Q++   + P+   F+ LI  FC  
Sbjct: 177 RKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMV 236

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-----------------AYR 290
             F     L H MV  N  PD  T+  +++ LCK     E                 A  
Sbjct: 237 GQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKH 296

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           VFN + +R   PD   YT +I  LCK+  + +A  ++ EM  KG+ P++ TY+S+I G C
Sbjct: 297 VFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLC 356

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           + + +  A  L  +M  +G     +TY + +  LC + + D+A  L +++  +GI  ++ 
Sbjct: 357 KSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNIN 416

Query: 411 TYNTLIQGYCKEGKIVN 427
           TYN LI G CKEG+  N
Sbjct: 417 TYNILIDGLCKEGRFEN 433



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 157/352 (44%), Gaps = 29/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD ++   L   L        A+ F D   + GF  N  S  + I  LC+ G    A
Sbjct: 113 GYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRAA 172

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+    V  ++  +++ +    K       ++LY          D++    LI  
Sbjct: 173 LQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYG 232

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA------ 262
           FC  G+  E + L  +++   + P+   FN L+   C++ +      +L  M+       
Sbjct: 233 FCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVN 292

Query: 263 -----------RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
                      R   PD  +Y  +I  LCK +   EA  +FN+++ +G  PD V Y+++I
Sbjct: 293 KAKHVFNIIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLI 352

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK   +  A ++  +M  +G   +  TY S +H  C+   +++A  L K++ D+G  
Sbjct: 353 DGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQ 412

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               TYN LI GLC  GR + A  +F+++  KG    V TYN +I G C EG
Sbjct: 413 PNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEG 464



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 139/311 (44%), Gaps = 16/311 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SPD+V+ + L         FK A         T  +P+  +  + +  LC+ G  +E   
Sbjct: 220 SPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEGSTKETKN 279

Query: 160 AFS-KLKEMGVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
             +  +KE+      K  +N  ++G  ++           D+     +I+  C    V E
Sbjct: 280 VLAVMMKEVNQVNKAKHVFN--IIGKRRVTP---------DVHSYTIIIKRLCKIKMVDE 328

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L  ++   G+ P+   ++ LI   C+ +      ELL  M AR +  D  TY   ++
Sbjct: 329 ALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLH 388

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK+ +  +A  +   +K++G  P+   Y  +I GLCK G   +A+ ++ +++ KG   
Sbjct: 389 ALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKV 448

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
             +TYN MI+G C     +EA  L ++M D G     VTY T+I  L  +    +A  L 
Sbjct: 449 TVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLL 508

Query: 398 EEMAQKGIFRD 408
            EM  +G+  +
Sbjct: 509 REMIARGLLEE 519



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 2/221 (0%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G L+++  N+        L  ++  + + P    FN +I+ +C          +L  ++ 
Sbjct: 54  GSLVKS--NNNNYPIAISLYHRLQLNAITPSIVTFNTVINCYCHLGEMDFAFSVLAKILK 111

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T   +I GLC + K  EA    + +  RG+  + V Y  +I+GLCKMG    
Sbjct: 112 MGYHPDTITLTTLIKGLCLNGKVHEALHFHDHVIARGFRLNEVSYGILINGLCKMGETRA 171

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  ++  K +  N   Y+++I   C+   + EA  L+ +M+ K      VT++ LI 
Sbjct: 172 ALQVLRKIDGKLVNTNVVMYSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIY 231

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G C+ G+  EA+ LF EM    I  DV T+N L+   CKEG
Sbjct: 232 GFCMVGQFKEAFGLFHEMVLTNINPDVCTFNILVDALCKEG 272


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 168/345 (48%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +       PD+V+ N L  SL +    K A D  D+    G +P+  S  + +
Sbjct: 310 AVRVFKEMRRQ-SILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIML 368

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWKLYHD---- 198
                 G + +    F  +   G+   I T+N    A   C  +D+  +++    D    
Sbjct: 369 NGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 428

Query: 199 --LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
             ++    +I A C  GK+ +  E   Q+++ G+VP+  A++ LI  FC   +  +  EL
Sbjct: 429 PHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKEL 488

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  PD V+Y  ++ G C 
Sbjct: 489 ISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCL 548

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN   Y ++++GYC+I  ++E   L +EML KG   +T+ 
Sbjct: 549 VGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 608

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN +I GL   GRT  A   F EM + GI  +  TY+ +++G  K
Sbjct: 609 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 653



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 123 CTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVP 182

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  ++N L+   C +   G+  +LL  M       +PD   Y  VI+G  K     +A  
Sbjct: 183 DVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACD 242

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y++V+H LCK   +  A     +M++KG+LP+ +TYN++I+GY 
Sbjct: 243 LFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM  +      V  NTL+  LC +G+  EA  +F+ MA KG   DV 
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 411 TYNTLIQGYCKEGKIVN 427
           +Y  ++ GY  +G +V+
Sbjct: 363 SYTIMLNGYATKGCLVD 379



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 163/374 (43%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PDLV+ + +  +L +ARA   A  FL                       STG     
Sbjct: 251 GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 310

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG----VFGSIKTWNS 178
                        P+  +L   +  LC+ G I+EA   F  +   G    VF      N 
Sbjct: 311 VRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNG 370

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I         LI+A+ N G + +   +  ++ + G+ P
Sbjct: 371 YATKGCL-VDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +  +I+  C         E  + M+ +   PD + Y  +I G C     L+A  + 
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELI 489

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++   G   D V + ++I+ LCK+G + DA+ ++   ++ GL P+   YN ++ GYC +
Sbjct: 490 SEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLV 549

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM QKGI    I Y
Sbjct: 550 GKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 609

Query: 413 NTLIQGYCKEGKIV 426
           N +I G  + G+ V
Sbjct: 610 NIIIDGLFEAGRTV 623



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 159/354 (44%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   D +  + L     EA+    A+D L       G  P+  S  +
Sbjct: 131 LALAFFGQLL-RTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNI 189

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC  G   +A      + E G   S  +  +N+ + G  K    +    L+ ++++
Sbjct: 190 LLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 249

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C    + +    LRQ++  G++P+N  +N LI  +     +  
Sbjct: 250 RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKE 309

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M  ++  PD      ++  LCK  K  EA  VF+ +  +G  PD   YT +++
Sbjct: 310 AVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G    G L D   ++  M+  G+ P+ YT+N +I  Y     L++A  +  EM D G   
Sbjct: 370 GYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VTY T+IA LC  G+ D+A   F +M  +G+  D   Y+ LIQG+C  G ++
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLL 483



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 158/372 (42%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+ S  ++ +            D  D     G +P+  +  + I+     G++++A
Sbjct: 356 GQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKA 415

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++++ GV   + T+ + +    +I + D   + ++ +I+ G          LIQ 
Sbjct: 416 MIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQG 475

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + +  EL+ +++ +G+  +   F  +I+  C+         +    V     PD
Sbjct: 476 FCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 535

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +++G C   K  +A RVF+ +   G  P+ V Y T+++G CK+G + +   ++ 
Sbjct: 536 AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFR 595

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY----------- 377
           EM+ KG+ P+   YN +I G         AK    EM + G      TY           
Sbjct: 596 EMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNR 655

Query: 378 ------------------------NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
                                   NT+IAG+    R +EA  LF  +++ G+    +TY+
Sbjct: 656 CFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYS 715

Query: 414 TLIQGYCKEGKI 425
            +I    KEG +
Sbjct: 716 IMITNLLKEGLV 727



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 147/341 (43%), Gaps = 14/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           G  PD+ S N+L  SL        A D L       T  SP+  +    I    + G + 
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------I 206
           +A   F ++ + G+   + T++S +    K    D        ++  G L         I
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI 298

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             + + G+  E   + +++    ++P+  A N L+   C+        ++  TM  + + 
Sbjct: 299 YGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD F+Y  ++NG       ++   +F+ +   G  PD   +  +I      G L  A  +
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 418

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM   G+ P+  TY ++I   CRI  +++A     +M+D+G       Y+ LI G C 
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCT 478

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           HG   +A  L  E+   G+  D++ + ++I   CK G++++
Sbjct: 479 HGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMD 519



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 9/234 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G + +A   F     +G+      +N  + G   + + +   +++  ++ +G 
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 567

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G++ EG  L R++L+ G+ P    +N +I    E         
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 627

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             H M     A +  TY  V+ GL K+R   EA  +F +L+      D +   T+I G+ 
Sbjct: 628 KFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 687

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +   + +A+ ++  +   GL+P   TY+ MI    +   +EEA+ +   M + G
Sbjct: 688 QTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAG 741



 Score = 45.4 bits (106), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  YTY  ++    R    E A     ++L  G     +  + L+ G C   RTDEA 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +YN L++  C +GK
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGK 199


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 164/353 (46%), Gaps = 32/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           GF PD  + + +   L  A   KV   FL        G +P+  +  + I   C++GLIE
Sbjct: 283 GFVPDTSTYSKVITFLCHAT--KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIE 340

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A   F +++ +G   ++ T+ + +   +K  +      ++H ++++G          L+
Sbjct: 341 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400

Query: 207 QAFCNDGKVSEGYELLRQVL--------------ED--GLVPENTAFNKLISRFCEKKNF 250
              C  G +S+ +E+  +++              ED   L P    +  L+   C+    
Sbjct: 401 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 460

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               ELL  M++    P++  Y+ +I+G CK+ K   A  VF  + + GY+P    YT++
Sbjct: 461 DHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSL 520

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I  + K G L  A K+  +M+     PN  TY +MI G CRI   E+A +L   M +KG 
Sbjct: 521 IDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGC 580

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               VTY  LI GL   G+ D +  LF +M++KG   + +TY  LI   C  G
Sbjct: 581 SPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +AF++  + +   GF P+ ++    I  LC +  +E+AF  F ++K +GV   + T+   
Sbjct: 271 KAFQLIKEMM-RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K    +    L+ ++   G          LI A+    +V +  ++  ++++ G 
Sbjct: 330 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 389

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----------------APDNFTYEE 274
            P +  +  L+   C+  N  +  E+   ++  +                 AP+  TY  
Sbjct: 390 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 449

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLCK+ K   A+ + + +   G  P+ ++Y  +I G CK G +  A++++ +M   G
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
            LP+ +TY S+I    +   L+ A ++  +ML        VTY  +I GLC  G +++A 
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M +KG   +V+TY  LI G  K GKI
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKI 600



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 147/341 (43%), Gaps = 28/341 (8%)

Query: 94  QWLHSH---YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQC 147
           QWL       G SP +V+   L  + ++A+    A D    +   G  PN  +    +  
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW------KLYHDLIE 201
           LC++G I +AF  ++KL        I T +SA         +D  +       L  +++ 
Sbjct: 403 LCKAGNISKAFEVYAKL--------IGTSDSA--------DSDFYFPCEDRHTLAPNVVT 446

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
            G L+   C   KV   +ELL  +L  G  P +  ++ LI  FC+        E+   M 
Sbjct: 447 YGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT 506

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P   TY  +I+ + K  +   A +V + + +    P+ V YT +I GLC++G   
Sbjct: 507 KCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESE 566

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A K+   M  KG  PN  TY ++I G  +   ++ +  L  +M  KG     VTY  LI
Sbjct: 567 KALKLLSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLI 626

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             LC  G  D+A  L  EM Q    + +  Y   IQG+ K 
Sbjct: 627 NHLCAAGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 163/414 (39%), Gaps = 67/414 (16%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN 137
           + L     V L  R  Q   S  GF  D  +      +L +   +  A+D ++   F  +
Sbjct: 48  QVLSSAGQVDLGFRV-QKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLD 106

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
                  I  L E+   +EA     +++      ++ T+ + L G +K  +     ++ +
Sbjct: 107 TVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIIN 166

Query: 198 DLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            ++  G          L+ ++CN+   +  Y+LL ++   G  P    +N  I   C ++
Sbjct: 167 MMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 226

Query: 249 -------------------------------NFGR----------VSELLHTMVARNRAP 267
                                          NF R            +L+  M+ +   P
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 286

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY +VI  LC + K  +A+ +F ++K  G  PD   YT +I   CK G +  A+ ++
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G  P   TY ++IH Y +   + +A  +   M+D G     VTY  L+ GLC  
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 388 GRTDEAYHLFEEMA----------------QKGIFRDVITYNTLIQGYCKEGKI 425
           G   +A+ ++ ++                 +  +  +V+TY  L+ G CK  K+
Sbjct: 407 GNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 460



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 147/365 (40%), Gaps = 64/365 (17%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           F+      +  +P++V+   L D L +A     A + LD   S+G  PN    +  I   
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C++G I+ A   F ++ + G   S+ T+ S                          LI  
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTS--------------------------LIDR 523

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              DG++    ++L Q+L+D   P    +  +I   C      +  +LL  M  +  +P+
Sbjct: 524 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 583

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GL K+ K   +  +F  +  +G  P+ V Y  +I+ LC  G L  AR +  
Sbjct: 584 VVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 643

Query: 329 EMIHK---------------------------------GLLPNEYTYNSMIHGYCRIDNL 355
           EM                                    G +P    Y  +I  + +   L
Sbjct: 644 EMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRL 703

Query: 356 EEAKRLHKEMLDKGYGETTVT--YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           E A  LHKEM++      T    Y +LI  LCL  + +EA+ L+ EM ++G   ++  + 
Sbjct: 704 EIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV 763

Query: 414 TLIQG 418
            LI+G
Sbjct: 764 CLIKG 768



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 136/318 (42%), Gaps = 26/318 (8%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE---------MGVFGSI---- 173
           D L   G+ P+  +    +Q L  +G ++  F    ++ E         +G F       
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
             W  AL     I+R D  +KL  D +   ++I          E    L ++  +  +P 
Sbjct: 89  GRWADAL---DMIERED--FKL--DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPN 141

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +  L+S F +KK  G    +++ M+     P+   +  +++  C  +    AY++ N
Sbjct: 142 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 201

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGD------ARKMWFEMIHKGLLPNEYTYNSMIH 347
            +   G  P  V+Y   I  +C    L        A K++ EM+    + N+    +   
Sbjct: 202 RMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFAR 261

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C +   ++A +L KEM+ KG+   T TY+ +I  LC   + ++A+ LF+EM   G+  
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 408 DVITYNTLIQGYCKEGKI 425
           DV TY  LI  +CK G I
Sbjct: 322 DVYTYTILIDSFCKAGLI 339



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 61/248 (24%), Positives = 106/248 (42%), Gaps = 37/248 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   L D L +A    +++D    +   G SPN  +  + I  LC +GL+++A
Sbjct: 579 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 638

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--LIQAFCNDGKV 215
                ++K+                          W  Y      GY   IQ F      
Sbjct: 639 RLLLGEMKQT------------------------YWPKYLQ----GYRCAIQGFSKSFIA 670

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTYE 273
           S G  +L ++   G VP    +  LI  F +        EL   M  V  +   DN  Y 
Sbjct: 671 SLG--ILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYA 728

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I  LC + +  EA+R+++++  RG+VP+  ++  +I GL ++    +A ++ + + H+
Sbjct: 729 SLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 788

Query: 334 GLLPNEYT 341
             L   YT
Sbjct: 789 VGLLLSYT 796


>gi|357130476|ref|XP_003566874.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Brachypodium distachyon]
          Length = 810

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N L     +A   + A++  D     G  P+ N+    +   C+ G ++EA   
Sbjct: 399 PDVFTYNNLIHWHCQAHKLREALNLFDRMKKAGVKPSINTYNSLLMGYCKKGCMDEAVKL 458

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           +S++   G   ++ T+ + + G I     D  + L  ++ ++G          LI   C 
Sbjct: 459 YSEMPMEGFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICM 518

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V E   +L+  + +G +P    +N +I+ F +    G    +   M  +   P+  T
Sbjct: 519 VDRVCEVDGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIIT 578

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   I+G C++     A ++ ND++ RG  PD V Y  +I+G C+ G +  A ++   ++
Sbjct: 579 YTSFIDGYCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILL 638

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GL PN   YNS+I GY  ++ ++E  + ++ M+  G    T TY TLI G    G   
Sbjct: 639 KDGLAPNTVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVA 698

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  L+ EM  KG   D  T+  L  G C+ G I
Sbjct: 699 FALELYSEMMAKGYIPDAFTFTALTHGLCRSGDI 732



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/261 (30%), Positives = 133/261 (50%), Gaps = 9/261 (3%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S GF P   +    I    ++G++  AF  + +++E G+  +I T+ S + G  +   +D
Sbjct: 534 SEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDGYCRTGCSD 593

Query: 191 LVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
           +  K+ +D+   G          LI  FC +G +S   +LL  +L+DGL P    +N LI
Sbjct: 594 MALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPNTVVYNSLI 653

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           + +        VS+   +M+      D  TY  +I+G  K      A  +++++  +GY+
Sbjct: 654 TGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYSEMMAKGYI 713

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD   +T + HGLC+ G +  A+K+  EM    + PN + YN +I+GY R   L+EA RL
Sbjct: 714 PDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDCKLQEAFRL 773

Query: 362 HKEMLDKGYGETTVTYNTLIA 382
           H EML+ G      TY+ L++
Sbjct: 774 HDEMLNMGIQPDDTTYDILVS 794



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 146/329 (44%), Gaps = 12/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P++V+   L    +  + F  A   LD     G S N  +  + I  +C    + E 
Sbjct: 466 GFKPNVVTYITLMRGYIAKKDFDNAYALLDEMKQNGVSCNDYTYNVLINGICMVDRVCEV 525

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                     G   ++ T+NS + G +K       + +Y  + E G           I  
Sbjct: 526 DGMLKSFMSEGFIPTMMTYNSIINGFVKAGMMGSAFTVYQQMREKGLPPNIITYTSFIDG 585

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G      ++L  V   GL P+  A+N LI+ FC++ N     +LL  ++    AP+
Sbjct: 586 YCRTGCSDMALKMLNDVRRRGLQPDIVAYNALINGFCQEGNMSHALQLLVILLKDGLAPN 645

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I G        E  + +  + + G V DT  YTT+I G  K G +  A +++ 
Sbjct: 646 TVVYNSLITGYKNLNMMKEVSKFYESMIKGGIVADTSTYTTLIDGFSKDGNVAFALELYS 705

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG +P+ +T+ ++ HG CR  +++ AK+L +EM           YN LI G     
Sbjct: 706 EMMAKGYIPDAFTFTALTHGLCRSGDIDGAKKLLEEMRRLDVRPNVFIYNMLINGYLRDC 765

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           +  EA+ L +EM   GI  D  TY+ L+ 
Sbjct: 766 KLQEAFRLHDEMLNMGIQPDDTTYDILVS 794



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 21/332 (6%)

Query: 112 LFDSLVEARAFKVAM--------DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +FD+L+ A   K  M        D +      P+     L I  LC+ G    A     +
Sbjct: 194 MFDALMSA-CLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLRE 252

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
           +KE+G      T+ + +   +K  R +   ++  ++ ++G          L++ +C   +
Sbjct: 253 MKEVGFDTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQE 312

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG-RVSELLHTMVARNRAPDNFTYE 273
           V     L ++ L+DG+VP    +  LI R C++     +  EL   M  +   P  F   
Sbjct: 313 VGNALNLFKETLKDGIVPTKVMYGVLI-RGCDQVGMTQKAYELCRQMTGQGLLPSTFELS 371

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            V+ GL   R+  +A  +F ++ + G +PD   Y  +IH  C+   L +A  ++  M   
Sbjct: 372 LVLKGLLNDRRWKDAVCLFEEMADSG-LPDVFTYNNLIHWHCQAHKLREALNLFDRMKKA 430

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G+ P+  TYNS++ GYC+   ++EA +L+ EM  +G+    VTY TL+ G       D A
Sbjct: 431 GVKPSINTYNSLLMGYCKKGCMDEAVKLYSEMPMEGFKPNVVTYITLMRGYIAKKDFDNA 490

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y L +EM Q G+  +  TYN LI G C   ++
Sbjct: 491 YALLDEMKQNGVSCNDYTYNVLINGICMVDRV 522



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 91/203 (44%)

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           S   +    ++  G+VP+  +   L+ R     +      L   M  R    D + ++ +
Sbjct: 139 SAATDTYAHMVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDAL 198

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ++   K     +A R+F+++      PD  +Y   I  LCK+G  G A +M  EM   G 
Sbjct: 199 MSACLKEGMHEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGF 258

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
              ++TY +M+    +   +EEA R++ EM D G     +   TL+ G CL      A +
Sbjct: 259 DTCDFTYRTMVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGNALN 318

Query: 396 LFEEMAQKGIFRDVITYNTLIQG 418
           LF+E  + GI    + Y  LI+G
Sbjct: 319 LFKETLKDGIVPTKVMYGVLIRG 341



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/168 (28%), Positives = 83/168 (49%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MVAR   PD  +  +++    +     +A  +F +++ RGY  D  M+  ++    K G 
Sbjct: 148 MVARGVVPDIKSRTDLLIRTARGSSAKDALALFMEMRGRGYRVDAWMFDALMSACLKEGM 207

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             DA +++ EM    + P++  Y   I   C++ +   A R+ +EM + G+     TY T
Sbjct: 208 HEDAVRLFDEMPGAEIDPDQRVYALAITALCKLGDGGRALRMLREMKEVGFDTCDFTYRT 267

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           ++  L   GR +EA  + +EM   G   DVI   TL++GYC   ++ N
Sbjct: 268 MVDVLVKTGRMEEALRVNDEMRDAGKKMDVIVATTLMRGYCLRQEVGN 315


>gi|359495888|ref|XP_003635109.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Vitis vinifera]
          Length = 580

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 152/312 (48%), Gaps = 16/312 (5%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV---FGSIKTWNSALLGCIK 185
           + ++G  PN  +  + I  LC+ GL+++A     K+ +         I T    + GC+K
Sbjct: 227 MANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLK 286

Query: 186 IDRTDLVWKLYH-----------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
             + D+V  L H           D++    LI  FC    ++  Y    ++ + GL+P+ 
Sbjct: 287 --KGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDI 344

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             +N LIS FC+  N      +   M     APD  +Y+ +I GLC     + A +    
Sbjct: 345 FTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVC 404

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + E   VP+ +++  VI G  + G L +A  +  +M+  G+ PN +TYN++IH   +  N
Sbjct: 405 MLENLMVPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGN 464

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           + +A  + KEML  G     VTYN LI   C  GR   A  L++EM ++G   D+ITY  
Sbjct: 465 IVDAHSIKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEMLRRGYEPDIITYTE 524

Query: 415 LIQGYCKEGKIV 426
           LI+G+C  G ++
Sbjct: 525 LIRGFCIRGHVM 536



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 121/268 (45%), Gaps = 38/268 (14%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++   YL+   C  G + +   L+R++LE G  P    FN  I  +C   N  +   L 
Sbjct: 165 DVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNTFIKGYCLNNNVDKALYLF 224

Query: 258 HTMVARNRAPDNFTYEEVINGLCK------SRKRLE------------------------ 287
            TM      P+  TY  +I+ LCK      +RK LE                        
Sbjct: 225 STMANSGIGPNKVTYNILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGC 284

Query: 288 --------AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
                   A   ++++ +RG   D V Y  +IHG C +  +  A + + EM  +GLLP+ 
Sbjct: 285 LKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDI 344

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           +TYN++I G+C+I NL+EA  +H  M   G     ++Y  +I GLC+HG    A      
Sbjct: 345 FTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVC 404

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           M +  +  + + +N +I G+ + G + N
Sbjct: 405 MLENLMVPEPLIWNVVIDGHGRHGDLSN 432



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 150/348 (43%), Gaps = 37/348 (10%)

Query: 90  IRFFQWLHS---HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLEL 143
           +R   WL +     G  PD+++ N L + L +A   + A + +      G SPN  +   
Sbjct: 147 LRAALWLRNKMIQKGVIPDVLTHNYLVNGLCKAGDLEKADNLVREMLEIGPSPNCATFNT 206

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
           +I+  C +  +++A   FS +   G+  +  T+N                          
Sbjct: 207 FIKGYCLNNNVDKALYLFSTMANSGIGPNKVTYN-------------------------- 240

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF--NKLISRFCEKKNFGRVSELLH--T 259
            LI A C  G + +  +LL ++L+D    E +    + +    C KK    V  L+H   
Sbjct: 241 ILIHALCKKGLLKDARKLLEKILDDDCGKETSDIITSTIFMDGCLKKG-DMVQALVHWDE 299

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+ R    D   Y  +I+G C  +    AYR F ++ +RG +PD   Y T+I G CK+G 
Sbjct: 300 MLQRGTQIDVVAYNVLIHGFCLIQDMNSAYRYFCEMFKRGLLPDIFTYNTLISGFCKIGN 359

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L +A  +   M   G  P+  +Y  +I G C   ++  A +    ML+       + +N 
Sbjct: 360 LDEACYIHGVMSKMGAAPDLISYKMIIQGLCIHGDVIRANQFLVCMLENLMVPEPLIWNV 419

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +I G   HG    A  + ++M   GI  +V TYN LI    K G IV+
Sbjct: 420 VIDGHGRHGDLSNALSIRDQMVSFGIPPNVFTYNALIHAQIKGGNIVD 467



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 128/306 (41%), Gaps = 12/306 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           + D+++  +  D  ++      A+   D +   G   +  +  + I   C    +  A+ 
Sbjct: 271 TSDIITSTIFMDGCLKKGDMVQALVHWDEMLQRGTQIDVVAYNVLIHGFCLIQDMNSAYR 330

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFC 210
            F ++ + G+   I T+N+ + G  KI   D    ++          DLI    +IQ  C
Sbjct: 331 YFCEMFKRGLLPDIFTYNTLISGFCKIGNLDEACYIHGVMSKMGAAPDLISYKMIIQGLC 390

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G V    + L  +LE+ +VPE   +N +I       +      +   MV+    P+ F
Sbjct: 391 IHGDVIRANQFLVCMLENLMVPEPLIWNVVIDGHGRHGDLSNALSIRDQMVSFGIPPNVF 450

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+   K    ++A+ +  ++   G  PD V Y  +I   C  G +  A +++ EM
Sbjct: 451 TYNALIHAQIKGGNIVDAHSIKKEMLLNGIYPDVVTYNLLIGAACNFGRIHFALRLYDEM 510

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G  P+  TY  +I G+C   ++ EA+ L  ++   G       +  LI   C     
Sbjct: 511 LRRGYEPDIITYTELIRGFCIRGHVMEAEELLAKLQRSGLSIDHAPFQILIQKYCRTRVP 570

Query: 391 DEAYHL 396
             AY L
Sbjct: 571 GRAYDL 576


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 181/397 (45%), Gaps = 73/397 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEA-RAFKVAMDF----LDSTGFSPNPN--SLELYIQCLCESGL 153
           G  PD+V+ N    +L  A + F+ +  F    +D     P PN  +  L ++  C+ G+
Sbjct: 249 GLLPDVVTFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGM 308

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR------------------------- 188
           +EEA      +K+ G F S++++N+ LLG ++  +                         
Sbjct: 309 MEEARSLVETMKKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNI 368

Query: 189 -----------------TDLVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
                             DL+    +Y D +    L+  +C+ GKV E   +L +++  G
Sbjct: 369 VMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKG 428

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             P     N L++   ++       E+L  M  ++   D  T   V+NGLC++ +  +A 
Sbjct: 429 CHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKAS 488

Query: 290 RVFNDLKERGY----------------------VPDTVMYTTVIHGLCKMGWLGDARKMW 327
            V +++   G                       VPD + YTT+I+GLCK+G L +A+K +
Sbjct: 489 EVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKF 548

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ K L P+  TY++ +  +C+   +  A R+ K+M   G  +T  TYN+LI GL   
Sbjct: 549 IEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSK 608

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G+  E Y L +EM ++GI  D+ TYN +I   C+ GK
Sbjct: 609 GQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGK 645



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 160/345 (46%), Gaps = 26/345 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+  + N+L  SL E+ A   A +  D     G  PN  ++ + ++  C +G  ++A
Sbjct: 146 GVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQA 205

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F   K  G    +  +N+ +    K D  D   KL   + E G L         I A
Sbjct: 206 L-EFVDGKMGGNVNRV-VYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISA 263

Query: 209 FCNDGKVSEGYELLRQVLEDGLV----PENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            C  GKV E   + R +  DG +    P    FN ++  FC++        L+ TM    
Sbjct: 264 LCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETM---- 319

Query: 265 RAPDNFTYEEVIN----GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +   NF   E  N    GL ++ K LE   V +++ E G  P+   Y  V+ GLC+   +
Sbjct: 320 KKGGNFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMM 379

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            DAR++   M+  G+ P+  TY +++HGYC    + EAK +  EM+ KG    T T NTL
Sbjct: 380 LDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTL 439

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  L   GR  EA  + ++M +K    D +T N ++ G C+ G++
Sbjct: 440 LNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGEL 484



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 147/336 (43%), Gaps = 26/336 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ S N++ D L        A   MD + S G  P+  +    +   C  G + EA
Sbjct: 358 GIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEA 417

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++   G   +  T N+ L    K  R     ++   + E  Y         ++  
Sbjct: 418 KAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNG 477

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G++ +  E++ ++  DG      +  K      E    G V+ + +  V+ N  PD
Sbjct: 478 LCRNGELEKASEVVSEMWTDG----TNSLGK------ENPVAGLVNSIHN--VSTN-VPD 524

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGLCK  K  EA + F ++  +   PD+V Y T +   CK G +  A ++  
Sbjct: 525 VITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLK 584

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M   G      TYNS+I G      + E   L  EM ++G      TYN +I  LC  G
Sbjct: 585 DMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGG 644

Query: 389 RTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEG 423
           +T +A  L  EM  KG+   +V ++  LI+ +CK G
Sbjct: 645 KTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSG 680



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 104/210 (49%), Gaps = 6/210 (2%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L   +++ G+ PE   FN LI   CE        EL   M  +   P+ FT   ++ G C
Sbjct: 138 LYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFC 197

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           ++ +  +A   F D K  G V + V+Y T++   CK     +A K+   M  KGLLP+  
Sbjct: 198 RAGRTKQALE-FVDGKMGGNV-NRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVV 255

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEM-LDKGYG---ETTVTYNTLIAGLCLHGRTDEAYHL 396
           T+NS I   CR   + EA R+ ++M +D   G      VT+N ++ G C  G  +EA  L
Sbjct: 256 TFNSRISALCRAGKVFEASRIFRDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSL 315

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            E M + G F  + +YNT + G  + GK++
Sbjct: 316 VETMKKGGNFVSLESYNTWLLGLLRNGKLL 345



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 158/337 (46%), Gaps = 25/337 (7%)

Query: 101 GFSPDLVSCNVLFDSL-VEARAFKV--AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +CN L +SL  E R  +    +  ++   +  +  +  + +  LC +G +E+A
Sbjct: 428 GCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKA 487

Query: 158 FCAFSKLKEMGVFGSIKTWN--SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
               S++   G   S+   N  + L+  I    T++      D+I    LI   C  GK+
Sbjct: 488 SEVVSEMWTDGT-NSLGKENPVAGLVNSIHNVSTNVP-----DVITYTTLINGLCKVGKL 541

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNF-TY 272
            E  +   +++   L P++  ++  +  FC++   G++S  L  +  + RN       TY
Sbjct: 542 EEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQ---GKISSALRVLKDMERNGCSKTLQTY 598

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I GL    +  E Y + ++++ERG  PD   Y  +I+ LC+ G   DA  +  EM+ 
Sbjct: 599 NSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLD 658

Query: 333 KGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGET--TVTYNTLIAGLCLHG 388
           KG++ PN  ++  +I  +C+  + + A  L    L   G+ E   ++ +N L+AG    G
Sbjct: 659 KGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEALYSLMFNELLAG----G 714

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  +A  LFE   ++ +      Y  LI   CK+G++
Sbjct: 715 KLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRL 751



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 123/275 (44%), Gaps = 14/275 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCA 160
           PD+++   L + L +    + A   F++    + +P+S+  + ++   C+ G I  A   
Sbjct: 523 PDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRV 582

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
              ++  G   +++T+NS +LG     +   ++ L  ++ E G          +I   C 
Sbjct: 583 LKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCE 642

Query: 212 DGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            GK  +   LL ++L+ G+V P  ++F  LI  FC+  +F    EL    ++     +  
Sbjct: 643 GGKTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEAL 702

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  + N L    K  +A  +F    ER  +    MY  +I  LCK G L DA  +  ++
Sbjct: 703 -YSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKL 761

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           I KG   +  ++  +I G  +  N ++A  L + M
Sbjct: 762 IDKGYCFDHSSFIPVIDGLSKRGNKQQADELGRIM 796


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 168/337 (49%), Gaps = 12/337 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
             P++   N + D+L + R+   A+  L    + G  P+  +    I  LC+ G ++EA 
Sbjct: 360 LPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAE 419

Query: 159 CAFSKLKEMGVFGSIKTWNSALLG-CIK---IDRTDLVWKLYH-----DLIESGYLIQAF 209
               +     +  ++ ++ S + G C++   I  ++L+ ++       D++  G LI   
Sbjct: 420 RLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGL 479

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G+VSE   +  ++    L+P+   +N LIS  C+KK       L+  M+ +N  PD 
Sbjct: 480 VVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDK 539

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           + Y  +I+G  ++    EA ++F  ++++G  PD V Y  +I G C+ G + +A +    
Sbjct: 540 YVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMST 599

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G +P+E+TY ++I GY +  N+  A  L  +M+ +      V Y++LI G C  G 
Sbjct: 600 MRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGD 659

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           TD A  LF  M  +G+F +VITY  LI    K+ K+V
Sbjct: 660 TDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVV 696



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 157/339 (46%), Gaps = 16/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           G  P+ V  NVL D     R   V    L     ++ G  P   +    +  L   G +E
Sbjct: 289 GCVPNAVFYNVLIDGYC--RRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLE 346

Query: 156 EAFCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKLY------HDLIESGYLI 206
           +     S+++E  +  +++ +NS   AL  C    +  +V K         D I    LI
Sbjct: 347 KIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLI 406

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C +G+V E   LLR+     L P  +++  LI  FC +      S LL  M+ R   
Sbjct: 407 SGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHT 466

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  T+  +I+GL  + +  EA  V   +  R  +PD  +Y  +I GLCK   L  AR +
Sbjct: 467 PDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNL 526

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM+ + + P++Y Y ++I G+ R ++L+EA+++ + M  KG     V YN +I G C 
Sbjct: 527 IEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQ 586

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G  +EA      M + G   D  TY TLI GY K+G I
Sbjct: 587 FGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNI 625



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 9/245 (3%)

Query: 190 DLVWKLYHDLI--ESG-------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           D   KLY +++  ESG        +++  C +G V +G +L+      G VP    +N L
Sbjct: 241 DDARKLYDEMLAEESGADDYSTCVMVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVL 300

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I  +C + + GR   LL  M A+   P   TY  +++ L +     +   + ++++ER  
Sbjct: 301 IDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRL 360

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+  +Y +VI  LCK      A  +  +M   G  P+  T++++I G C+   ++EA+R
Sbjct: 361 PPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAER 420

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L +E           +Y +LI G C+ G    A +L  EM ++G   DV+T+  LI G  
Sbjct: 421 LLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIHGLV 480

Query: 421 KEGKI 425
             G++
Sbjct: 481 VAGQV 485



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 152/352 (43%), Gaps = 29/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+   L   LV A     A+   + + +    P+ N   + I  LC+  ++  A
Sbjct: 464 GHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAA 523

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                ++ E  V      + + + G I+ +  D   K++          D++    +I+ 
Sbjct: 524 RNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKG 583

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G ++E  E +  + + G +P+   +  LI  + ++ N      LL  M+ R   P+
Sbjct: 584 YCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPN 643

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +ING CK      A  +F  ++ +G  P+ + YT +I  L K   +  A  M+F
Sbjct: 644 VVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVVRA-AMYF 702

Query: 329 E-MIHKGLLPNEYTYNSMIHGYCRI------DNLEEAKRLH---------KEMLDKGYGE 372
           E M+     PN+YT +S++ G C         +      LH         + +++     
Sbjct: 703 EYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVNDRCDP 762

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               YN +I  LC+H    EA  L  +MA KG   D  T+ +L+ G+C  GK
Sbjct: 763 RNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGK 814



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/160 (28%), Positives = 81/160 (50%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+   Y  +I+G C+         +  +++ +G +P  V Y T++  L + G L     +
Sbjct: 292 PNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSWLGRKGDLEKIASL 351

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM  + L PN   YNS+I   C+  +  +A  + K+M   G     +T++TLI+GLC 
Sbjct: 352 LSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQ 411

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            GR  EA  L  E  +  +  ++ +Y +LI G+C  G+++
Sbjct: 412 EGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVI 451



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/309 (20%), Positives = 116/309 (37%), Gaps = 27/309 (8%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           +SL EAR      +F++  G  P+       I+  C+ G++ EA    S ++++G     
Sbjct: 553 ESLDEARKI---FEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDE 609

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQ 224
            T+ + + G  K         L  D+++            LI  +C  G       L   
Sbjct: 610 FTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGS 669

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +   GL P    +  LI    +K    R +     M+    +P+++T   ++ GLC S  
Sbjct: 670 MESQGLFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQCSPNDYTLHSLVTGLCNSMA 729

Query: 285 RLEAYR---------------VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            + +                 +F  L      P    Y  +I  LC    LG+A  +  +
Sbjct: 730 SIISSHCSSTVNLHGKGALLDIFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEALDLKNK 789

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M +KG  P+  T+ S+++G+C +    E + +      +   E    Y  L     +   
Sbjct: 790 MANKGYKPDSATFLSLLYGFCSVGKSREWRTILPNEFQRDELEVASRYKILFDQYVVKSV 849

Query: 390 TDEAYHLFE 398
             E Y +F+
Sbjct: 850 GCEVYSVFQ 858


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 169/340 (49%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+   L       + F      M+ +   GF P   ++   +  L + G I+ A
Sbjct: 283 GLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSA 342

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWKLYHDL------IESGYLIQA 208
           +    KL   G   ++  +N+ +    K   +D+ +L++K  H +      +    LI +
Sbjct: 343 YDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDS 402

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS--ELLHT-MVARNR 265
           FC  G +        +++EDG+      +N LI+  C+   FG +S  E L+T M+    
Sbjct: 403 FCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCK---FGDLSAAEFLYTKMINEGL 459

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P   T+  +I+G CK  +  +A++++ ++ E+   P    +T +I+GLC    + +A K
Sbjct: 460 EPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASK 519

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ + + P E TYN MI GYC+  N+++A  L ++ML  G    T TY  LI+GLC
Sbjct: 520 LFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLC 579

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             GR   A    +++ +K +  + + Y+ L+ GYC +G++
Sbjct: 580 STGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRL 619



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 148/336 (44%), Gaps = 12/336 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +GF P+L   N L ++L +      A      + S     N  +  + I   C+ G+++ 
Sbjct: 352 FGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDV 411

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F ++ E G+  +I  +NS + G  K         LY  +I  G          LI 
Sbjct: 412 AESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLIS 471

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C D +V + ++L R++ E  + P    F  LI   C        S+L   MV R   P
Sbjct: 472 GYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKP 531

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I G CK+    +A+ +  D+   G VPDT  Y  +I GLC  G +  A+   
Sbjct: 532 TEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFI 591

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            ++  K L  NE  Y++++HGYC    L EA     EM+ +G     V +  LI G    
Sbjct: 592 DDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAMKQ 651

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                 + L ++M  +G+  D + Y ++I  Y KEG
Sbjct: 652 QDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEG 687



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 29/329 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +C+ +  SL E + F   K  + +++S  F  +  +  + I  LC+ G + EA
Sbjct: 213 GVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEA 272

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 L+E G+   + T+ + +LG                          FC   +  +
Sbjct: 273 LEVRKSLREKGLKEDVVTYCTLVLG--------------------------FCRVQQFDD 306

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G  L+ +++E G VP   A + L+    +K N     +L+  +      P+ F Y  +IN
Sbjct: 307 GICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALIN 366

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK     +A  ++ ++       + V Y+ +I   CK G L  A   +  MI  G+  
Sbjct: 367 ALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRE 426

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
             Y YNS+I+G+C+  +L  A+ L+ +M+++G   T  T+ TLI+G C   + ++A+ L+
Sbjct: 427 TIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLY 486

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            EM +K I   V T+  LI G C   ++ 
Sbjct: 487 REMNEKEIAPSVYTFTALIYGLCSTNEMA 515



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 156/372 (41%), Gaps = 80/372 (21%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P   +    I   C+   +E+AF  + ++ E  +  S+ T+ + + G    +     
Sbjct: 458 GLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEA 517

Query: 193 WKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            KL+ +++E            +I+ +C    + + +ELL  +L +GLVP+   +  LIS 
Sbjct: 518 SKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISG 577

Query: 244 FCE---------------KKNF-----------------GRVSELLHT---MVARNRAPD 268
            C                KKN                  GR++E L     M+ R    D
Sbjct: 578 LCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMD 637

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI----------------- 311
              +  +I+G  K +     + +   + ++G  PD+V+YT++I                 
Sbjct: 638 LVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLD 697

Query: 312 ------------------HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
                             +GLCK+G +  A  ++ +M+   + PN  TY   +    +  
Sbjct: 698 LMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEG 757

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           N++EA  LH EML KG    T TYN LI G C  GR  EA  +  EM + GIF D ITY+
Sbjct: 758 NMKEATDLHHEML-KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYS 816

Query: 414 TLIQGYCKEGKI 425
           T+I  +C+ G +
Sbjct: 817 TIIYEHCRSGDV 828



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 158/335 (47%), Gaps = 15/335 (4%)

Query: 104 PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P  V+ NV+ +   +A    +AF++  D L + G  P+  +    I  LC +G +  A  
Sbjct: 531 PTEVTYNVMIEGYCKAHNMDKAFELLEDMLHN-GLVPDTYTYRPLISGLCSTGRVSAAKD 589

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN----DGKV 215
               L +  +  +   +++ L G     R         ++I+ G  +   C+    DG +
Sbjct: 590 FIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVCHAVLIDGAM 649

Query: 216 SEG-----YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +      + LL+++ + GL P++  +  +I  + ++ +F +  E L  MV     P+  
Sbjct: 650 KQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVV 709

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY   +NGLCK  +   A  +F  +      P++V Y   +  L K G + +A  +  EM
Sbjct: 710 TYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM 769

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + KGLL N  TYN +I G+C++  L EA ++  EM + G     +TY+T+I   C  G  
Sbjct: 770 L-KGLLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDV 828

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             A  L++ M +KG+  D + +N LI G C  G +
Sbjct: 829 GAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGAL 863



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 109/458 (23%), Positives = 178/458 (38%), Gaps = 101/458 (22%)

Query: 33  TKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFF---------REFLKQQ 83
           +K + +  T     +  I R    W+           FNDP            +  +   
Sbjct: 23  SKSTNENDTHFITHISDIVRGNLSWK---------IAFNDPSISSTLKPHHVEQVLINTL 73

Query: 84  NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPN--- 137
           ++  L++RFF +L  H   +    S  +L  +LV+ + F  A   L +    G  P    
Sbjct: 74  HDSKLALRFFNFLGLHKNMNHTTTSFAILVHALVQNKLFWPANSLLHTLLLRGSDPKFVF 133

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI---------------KTWNSALLG 182
              LE + QC   S L  + F   S L+   VF ++               +T ++ L G
Sbjct: 134 EKFLESHKQCKFSSTLGFD-FLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNG 192

Query: 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
            ++I +  LVW+++ + + +G                          + P+    + +I 
Sbjct: 193 LLRIRKFILVWEVFDESVNAG--------------------------VKPDPYTCSAVIR 226

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             CE K+F R  E +  M +        TY  +I+GLCK    LEA  V   L+E+G   
Sbjct: 227 SLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEALEVRKSLREKGLKE 286

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----------------------------- 333
           D V Y T++ G C++    D   +  EM+                               
Sbjct: 287 DVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAVSGLVDGLRKKGNIDSAYDLV 346

Query: 334 ------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
                 G LPN + YN++I+  C+ ++L++A+ L+K M         VTY+ LI   C  
Sbjct: 347 VKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKR 406

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D A   F  M + GI   +  YN+LI G+CK G +
Sbjct: 407 GMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDL 444



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/362 (21%), Positives = 138/362 (38%), Gaps = 55/362 (15%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIE 155
           H G  PD  +   L   L        A DF+D         N       +   C  G + 
Sbjct: 561 HNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLT 620

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           EA  A  ++ + G+   +      + G +K      ++ L   + + G          +I
Sbjct: 621 EALSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMI 680

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            A+  +G   +  E L  ++ +   P    +   ++  C+     R   L   M+  N +
Sbjct: 681 DAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKMLTANIS 740

Query: 267 PDNFTY----------------------------------EEVINGLCKSRKRLEAYRVF 292
           P++ TY                                    +I G CK  + +EA +V 
Sbjct: 741 PNSVTYGCFLDSLTKEGNMKEATDLHHEMLKGLLANTATYNILIRGFCKLGRLIEATKVL 800

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++ E G  PD + Y+T+I+  C+ G +G A ++W  M+ KG+ P+   +N +I+G C  
Sbjct: 801 SEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVN 860

Query: 353 DNLEEAKRLHKEMLDKGYGETTV---------TYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
             L++A  L  +ML +G     +           N L+ G C+ G  D A  L+  M  +
Sbjct: 861 GALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTR 920

Query: 404 GI 405
            +
Sbjct: 921 AV 922



 Score = 45.4 bits (106), Expect = 0.057,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 78/192 (40%), Gaps = 18/192 (9%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T+F  L+    + K F   + LLHT++ R   P  F +E          K LE+++    
Sbjct: 97  TSFAILVHALVQNKLFWPANSLLHTLLLRGSDP-KFVFE----------KFLESHK---- 141

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
              +     T+ +  ++H   +   + DA  +   M+   LLP   T +++++G  RI  
Sbjct: 142 ---QCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRK 198

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
                 +  E ++ G      T + +I  LC       A      M        ++TYN 
Sbjct: 199 FILVWEVFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNV 258

Query: 415 LIQGYCKEGKIV 426
           LI G CK G ++
Sbjct: 259 LIHGLCKGGGVL 270


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 168/388 (43%), Gaps = 51/388 (13%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD-------STGFSPNPNSL 141
           ++  F  +   +     + S N + + ++    +   ++F D       +   SPN  S 
Sbjct: 131 AVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSF 190

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            L I+ LC+   ++ A   F  + E        T+ + + G  K +R D    L  ++  
Sbjct: 191 NLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQS 250

Query: 202 SG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          LI   C  G ++   +L+  +   G VP    +N LI   C K    +
Sbjct: 251 EGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDK 310

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY------------ 300
              LL  MV+    P++ TY  +INGL K R+  +A R+ + ++ERGY            
Sbjct: 311 AVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLIS 370

Query: 301 -----------------------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
                                   P+ V+Y+ ++ GLC+ G   +A+++   MI  G LP
Sbjct: 371 GLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLP 430

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N YTY+S++ G+ +    EEA ++ KEM   G       Y+ LI GLC  GR  EA  ++
Sbjct: 431 NAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVW 490

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +M   GI  D + Y+++I+G C  G +
Sbjct: 491 SKMLTIGIKPDTVAYSSIIKGLCGIGSM 518



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 150/331 (45%), Gaps = 15/331 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP  V  NVL D L +          +D+    G  PN  +    I  LC  G +++A
Sbjct: 252 GCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKA 311

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++       +  T+ + + G +K  R     +L   + E GY         LI  
Sbjct: 312 VSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISG 371

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GK  E   L R++ E G  P    ++ L+   C +       E+L+ M+A    P+
Sbjct: 372 LFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPN 431

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  ++ G  K+    EA +V+ ++ + G   +   Y+ +I GLC +G + +A  +W 
Sbjct: 432 AYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWS 491

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML---DKGYGETTVTYNTLIAGLC 385
           +M+  G+ P+   Y+S+I G C I +++ A +L+ EML   +       VTYN L+ GLC
Sbjct: 492 KMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLC 551

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +      A  L   M  +G   DVIT NT +
Sbjct: 552 MQKDISRAVDLLNSMLDRGCDPDVITCNTFL 582



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 63/299 (21%), Positives = 120/299 (40%), Gaps = 29/299 (9%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           +VL   L +    + AM     +   G  PN     + +  LC  G   EA    +++  
Sbjct: 366 SVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIA 425

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSE 217
            G   +  T++S + G  K    +   +++ ++ ++G          LI   C  G+V E
Sbjct: 426 SGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKE 485

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA---PDNFTYEE 274
              +  ++L  G+ P+  A++ +I   C   +     +L H M+ +      PD  TY  
Sbjct: 486 AMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNI 545

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLC  +    A  + N + +RG  PD +   T ++ L +     D  + + E +   
Sbjct: 546 LLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSFLEELVVR 605

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           LL  +      + G C I  +         ML K     T T+  ++  +C   + + A
Sbjct: 606 LLKRQR-----VSGACTIVEV---------MLGKYLAPKTSTWAMIVREICKPKKINAA 650


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L + L     F  A+    +++  G   N  +    I+ LC  G IE+A
Sbjct: 410 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 469

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F K+ +MG   ++ T+N+ + G +     +   +L   + E+G          L+  
Sbjct: 470 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 529

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   GK+       ++++E GL P   ++  LI    +         LL  M      P+
Sbjct: 530 FSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPN 589

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  VINGL K  +  EA ++ + + E+G +P+ + YTT+I GLC+ G    A K++ 
Sbjct: 590 VESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFH 649

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +  LPN YTY+S+I+G C+    +EA+ L KEM  KG     VT+ +LI G  + G
Sbjct: 650 DMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLG 709

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           R D A+ L   M   G   +  TY+ L++G  KE
Sbjct: 710 RIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKE 743



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  GF   L SCN L   L +    + A +    + ++G  P+  +    I  L + G +
Sbjct: 197 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 256

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            EA    S++ +  +   + T+ S +LG  +    DL + ++  +++ G          L
Sbjct: 257 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   CN+G+V E  ++L +++E G+ P    +   I+  C  ++     EL+  M  R  
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 376

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +I+GL +  K   A  +++ + + G VP+TV Y  +I+ LC  G    A K
Sbjct: 377 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 436

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M   G L N  TYN +I G C   ++E+A  L ++ML  G   T VTYNTLI G  
Sbjct: 437 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 496

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G  + A  L + M + G   D  TYN L+ G+ K GK+
Sbjct: 497 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 536



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 189/424 (44%), Gaps = 52/424 (12%)

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLK----QQNNVLLSIRFFQWLHSHYGFSPDLV 107
           + K R  + +LS I  ++ +  +F    L     +  N+ L+   F  +    G  P+ V
Sbjct: 253 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKE-GCDPNSV 311

Query: 108 SCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           + + L + L        A+D L+     G  P   +  L I  LC     EEA    +++
Sbjct: 312 TYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARM 371

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------------- 204
           K+ G   +++T+ + + G  ++ + ++   LYH +++ G                     
Sbjct: 372 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 431

Query: 205 ------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                                   +I+  C  G + +   L  ++L+ G +P    +N L
Sbjct: 432 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL 491

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+ +  K N    + LL  M      PD +TY E+++G  K  K   A   F ++ E G 
Sbjct: 492 INGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 551

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+ V YTT+I G  K G +  A  +   M   G  PN  +YN++I+G  + +   EA++
Sbjct: 552 NPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEK 611

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  +M ++G     +TY TLI GLC +GRT  A+ +F +M ++    ++ TY++LI G C
Sbjct: 612 ICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 671

Query: 421 KEGK 424
           +EGK
Sbjct: 672 QEGK 675



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 90/362 (24%), Positives = 156/362 (43%), Gaps = 36/362 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++ S N + + L +   F  A    D +   G  PN  +    I  LC +G  + A
Sbjct: 585 GCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFA 644

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVWK------LYHDLIESGYLIQA 208
           F  F  +++     ++ T++S + G     K D  +++ K      L  D +    LI  
Sbjct: 645 FKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDG 704

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF------CEKK-------------- 248
           F   G++   + LLR++++ G  P    ++ L+          E+K              
Sbjct: 705 FVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFSPH 764

Query: 249 ----NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
               NF  VS LL  M      P   TY  +++GLC+  +  EA ++  D+KERG+ PD 
Sbjct: 765 EKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDR 824

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +Y +++   CK   +  A K++  +  KG   +   Y ++I   C+   +EEA+ L   
Sbjct: 825 EIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDN 884

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           ML+K +    + +  L+ GL   G  D    L   M  K    ++ TY  L +   + GK
Sbjct: 885 MLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGK 944

Query: 425 IV 426
            +
Sbjct: 945 SI 946



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 104/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I+A  N+ ++    + L ++   G      + N L+ +  + +       L   M+   
Sbjct: 176 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 235

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   T+  +IN L K  K  EA  + + + +    PD   YT++I G C+   L  A 
Sbjct: 236 IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAF 295

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M+ +G  PN  TY+++I+G C    ++EA  + +EM++KG   T  TY   I  L
Sbjct: 296 GVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 355

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C     +EA  L   M ++G   +V TY  LI G  + GK+
Sbjct: 356 CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKL 396



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 139/337 (41%), Gaps = 38/337 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++++   L D L        AFK+  D ++     PN  +    I  LC+ G  +E
Sbjct: 620 GLLPNVITYTTLIDGLCRNGRTQFAFKIFHD-MEKRKCLPNLYTYSSLIYGLCQEGKADE 678

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------YLI--- 206
           A     +++  G+     T+ S + G + + R D  + L   +++ G       Y +   
Sbjct: 679 AEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLK 738

Query: 207 ----QAFCNDGKVSEGYE-------------------LLRQVLEDGLVPENTAFNKLISR 243
               +    + KV+  +E                   LL ++ E G  P    ++ L+S 
Sbjct: 739 GLQKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSG 798

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C K  F    +L+  M  R   PD   Y  ++   CK+ +   A ++F+ ++ +G+   
Sbjct: 799 LCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLH 858

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
             +Y  +I  LCK G + +A+ ++  M+ K    +E  +  ++ G  +   L+   +L  
Sbjct: 859 LSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLH 918

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            M  K +     TY  L   L   G++ E+  L +++
Sbjct: 919 IMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKL 955



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 52/224 (23%), Positives = 86/224 (38%), Gaps = 17/224 (7%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
           Q+  +LL  +      + Y FSP     N    S + AR        +   G  P  ++ 
Sbjct: 741 QKECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLAR--------MSEIGCEPTLDTY 792

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
              +  LC  G   EA      +KE G     + + S L+   K    D   K++H +  
Sbjct: 793 STLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEA 852

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+         LI A C  G+V E   L   +LE     +   +  L+    ++     
Sbjct: 853 KGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDL 912

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
             +LLH M ++N  P+  TY  +   L +  K +E+  + + LK
Sbjct: 913 CMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 956


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 155/329 (47%), Gaps = 13/329 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           S  +L   L EA+  + A+     +   G SPN  +    I  LC+SG + +A   F  +
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            + GV  S+ T+N+ ++G  K+ R +   K+   + ++G          LI   C D K 
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKT 373

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  ELL   +++G  P    F  LI+ +C  + F     + + M++     D   + ++
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           IN L K  +  EA  + N++   G VP+ + YT++I G CK G +  A ++   M   G 
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN +TYNS+++G  +   L +A  L  +M   G     +TY TL+ G C     D A+ 
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LFE M Q G+  D   Y  L    CK G+
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAGR 582



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 162/349 (46%), Gaps = 27/349 (7%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNSLELY 144
           ++ FF+WL    GF     S   L   L   RA     ++ +  L+ +  + +       
Sbjct: 73  ALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAEDMRVSADA 132

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           IQ +  +G    A              S K +N AL    + D T+ + ++Y  L++ G 
Sbjct: 133 IQAIRRTGSARLAL-------------SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGL 179

Query: 205 L---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           L         I+++C +G ++  +   R +LE GL PE    N L+  +C      +   
Sbjct: 180 LPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACW 239

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M       + ++Y  +I GLC+++   EA  +F  +K  G  P+   +T +I GLC
Sbjct: 240 LFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLC 299

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +GDAR ++  M   G++P+  TYN+MI GY ++  + +A ++ + M   G      
Sbjct: 300 KSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDW 359

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TYNTLI GLC   +T+EA  L     ++G    V+T+  LI GYC   K
Sbjct: 360 TYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 407



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           GF+P +V+   L +    A  F  A+   +    S     L+++   I  L +   ++EA
Sbjct: 387 GFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEA 446

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++   G+  ++ T+ S + G  K  + D+  ++   +   G          L+  
Sbjct: 447 KELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 506

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              D K+ +   LL ++ +DG++P    +  L+   C++ +F     L   M      PD
Sbjct: 507 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPD 566

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  + + LCK+ +  EAY     +  +G     V YTT+I G  K G    A  +  
Sbjct: 567 EHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIE 623

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G  P+ YTY+ ++H  C+   L EA  +  +M  +G   T   Y  LI  +   G
Sbjct: 624 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D A  ++ EM   G      TY   I  YCKEG++
Sbjct: 684 KHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 144/331 (43%), Gaps = 36/331 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +CN L          + A      +   G   N  S  + IQ LCE+  + EA
Sbjct: 213 GLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREA 272

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F  +K  G   +++ +                           +LI   C  G+V +
Sbjct: 273 LVLFLMMKRDGCSPNVRAFT--------------------------FLISGLCKSGRVGD 306

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT--MVARNRA-PDNFTYEE 274
              L   + ++G+VP    +N +I  +      GR+++ L    ++ +N   PD++TY  
Sbjct: 307 ARLLFDAMPQNGVVPSVMTYNAMIVGY---SKLGRMNDALKIKELMEKNGCHPDDWTYNT 363

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I GLC  +K  EA  + N+  + G+ P  V +T +I+G C      DA +M  +M+   
Sbjct: 364 LIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSK 422

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              +   +  +I+   + D L+EAK L  E+   G     +TY ++I G C  G+ D A 
Sbjct: 423 CKLDLQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIAL 482

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + + M + G   +  TYN+L+ G  K+ K+
Sbjct: 483 EVLKMMERDGCQPNAWTYNSLMYGLVKDKKL 513



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 158/391 (40%), Gaps = 66/391 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  P++++   + D   ++    +A++ L   +  G  PN  +    +  L +   +
Sbjct: 454 SANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKL 513

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            +A    +K+++ G+  ++ T+ + L G       D  ++L+  + ++G          L
Sbjct: 514 HKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 573

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
             A C  G+  E Y     ++  G+      +  LI  F +  N    + L+  M+    
Sbjct: 574 TDALCKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGC 630

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD++TY  +++ LCK ++  EA  + + +  RG       YT +I  + + G    A++
Sbjct: 631 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 690

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           M+ EM   G  P+  TY   I+ YC+   LE+A+ L  +M  +G     VTYN LI G  
Sbjct: 691 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750

Query: 386 LHGRTDEAY--------------------------------------------------- 394
             G  D A+                                                   
Sbjct: 751 HMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITW 810

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L E M + G+   V TY++LI G+CK G++
Sbjct: 811 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRL 841



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/185 (34%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++RF   +  GRV   L   V     PD  TY  +I   CK      A+R F  L E G 
Sbjct: 158 LARFDMTEYMGRVYSQL---VQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLLEGGL 214

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+T     ++ G C+ G L  A  ++  M   G   NEY+Y  +I G C    + EA  
Sbjct: 215 EPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVREALV 274

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L   M   G       +  LI+GLC  GR  +A  LF+ M Q G+   V+TYN +I GY 
Sbjct: 275 LFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 334

Query: 421 KEGKI 425
           K G++
Sbjct: 335 KLGRM 339



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 25/318 (7%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +  + +  LC+   + EA     ++   G+  +I  +   +   ++  + D  
Sbjct: 629 GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHA 688

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++Y+++  SG+          I ++C +G++ +  +L+ ++  +G+ P+   +N LI  
Sbjct: 689 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR----KRLEAYRVFN------ 293
                   R    L  MV  +  P+ +TY  ++  L K      + ++   ++N      
Sbjct: 749 CGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDI 808

Query: 294 --DLKER----GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
              L ER    G  P    Y+++I G CK G L +A  +   M  KGL PNE  Y  +I 
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C     E+A      M + G+     +Y  L+ GLC  G  ++   LF ++ + G   
Sbjct: 869 CCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNH 928

Query: 408 DVITYNTLIQGYCKEGKI 425
           D + +  L  G  K G +
Sbjct: 929 DEVAWKILNDGLLKAGYV 946



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN  +    R D  E   R++ +++  G    TVTYNT+I   C  G    A+  F  + 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLL 210

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           + G+  +  T N L+ GYC+ G++
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGEL 234


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEE 156
           +G  P   +C     +L +   ++ A   F+D  + G  PN  +    I  LC SGL++ 
Sbjct: 484 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKV 543

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW---------KLYHDLIESGYLIQ 207
           A   F ++   GVF +  T+N+ +   ++  R    +          L+ +++    +I+
Sbjct: 544 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIK 603

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G   +   ++  +L+ G       +N +I  +C+  N      +L  M      P
Sbjct: 604 GYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 663

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D ++Y E+I G CK  K   A+ +FN++ + G  P+ V YT +I G CK   L  A  + 
Sbjct: 664 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 723

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  PN  TYN +IHG  + +N   A+ L K M+++G     VTY  +I GLC +
Sbjct: 724 EHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKN 783

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T  A  +F +M ++G   +++TY++LI+   +EGK+
Sbjct: 784 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV 821



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +   L   L  +   KVA+     +   G  PN  +    I  L E+  I+ A
Sbjct: 520 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 579

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   + +   G+F +I T+N  + G   +        + +++++ G+         +I+ 
Sbjct: 580 FVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 639

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C+ G  +    +L  + + G  P+  ++ +LI  FC+         L + MV     P+
Sbjct: 640 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 699

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  K   A  +   +K  G  P+   Y  +IHGL K      A ++  
Sbjct: 700 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 759

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G+ PN  TY +MI G C+  +   A  +  +M+++G     +TY++LI  L   G
Sbjct: 760 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 819

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +EA +LF E+ + G+  D ITY  +I+ Y   GK+
Sbjct: 820 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 856



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC+SG + EAF    ++   G+  +  T    ++    +   +  
Sbjct: 450 GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDA 509

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           W+L+ D+   G          LI   C  G +     L  ++  DG+ P    +N LI+ 
Sbjct: 510 WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINI 569

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             E +       +L+ M       +  TY E+I G C      +A  V N++ +RG+  +
Sbjct: 570 LVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 629

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y T+I G C  G    A ++   M   G  P+E++Y  +I G+C+I  +E A  L  
Sbjct: 630 LVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN 689

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EM+D G     VTY  LI G C   + D A  L E M + G   +V TYN LI G  K+
Sbjct: 690 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 748



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 130/266 (48%), Gaps = 13/266 (4%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
           MG+F     +++ L+   ++  T  V   YH ++  G          +I A C DG V++
Sbjct: 348 MGLFA----YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVAD 403

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              ++++V E  + P+   +  +I   C K +     ++ + M      P+  TY  +IN
Sbjct: 404 AETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLIN 463

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC S +  EA+ +  ++   G +P     T  I  LC MG   DA +++ +M +KG  P
Sbjct: 464 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 523

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N YTY ++I G C    L+ A  L   M   G    TVTYN LI  L  + R   A+ + 
Sbjct: 524 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 583

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
             M + G+F +++TYN +I+GYC  G
Sbjct: 584 NLMGRNGLFTNIVTYNEMIKGYCILG 609



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 156/344 (45%), Gaps = 15/344 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELY 144
           ++I  F  + S  G  P+ V+ N L + LVE R  K   V ++ +   G   N  +    
Sbjct: 543 VAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEM 601

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I+  C  G  ++A    + + + G   ++ T+N+ + G      T    ++  DL+  G 
Sbjct: 602 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGG 660

Query: 204 ---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     LI  FC   K+   + L  ++++DGL P    +  LI  +C+ +     +
Sbjct: 661 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 720

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LL  M      P+  TY  +I+GL K      A  +   + E G  P+ V YT +I GL
Sbjct: 721 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 780

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G    A +M+ +MI +G LPN  TY+S+I    +   +EEA+ L  E+   G     
Sbjct: 781 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 840

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +TY  +I    + G+ + A++    M + G    + TY  LI+G
Sbjct: 841 ITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 884



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G  PN       I  LC+ G + +A     K+ E  +     T+ S +LG  +    D
Sbjct: 378 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 437

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              ++++ + + G          LI   C+ G+V+E ++L+R+++  G++P        I
Sbjct: 438 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 497

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+   +     L   M  +   P+ +TY  +I+GLC S     A  +F+ +   G  
Sbjct: 498 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 557

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+TV Y  +I+ L +   +  A  +   M   GL  N  TYN MI GYC + + ++A  +
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              ML +G+    VTYNT+I G C  G T  A  + + M   G   D  +Y  LI G+CK
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677

Query: 422 EGKI 425
             K+
Sbjct: 678 ISKM 681



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 35/248 (14%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +LI++  +   ++     L  + + GL     A++ L+           V +  H M++ 
Sbjct: 320 HLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 379

Query: 264 NRAPDNFTYEEVINGLCKS----------RKRLE-------------------------A 288
              P+   Y  VIN LCK           +K  E                         A
Sbjct: 380 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 439

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +VFN + + G  P+TV Y+T+I+GLC  G + +A  +  EMI  G+LP  +T    I  
Sbjct: 440 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 499

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C +   E+A RL  +M +KG      TY  LI+GLC+ G    A  LF  M++ G+F +
Sbjct: 500 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 559

Query: 409 VITYNTLI 416
            +TYN LI
Sbjct: 560 TVTYNALI 567



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 140/359 (38%), Gaps = 36/359 (10%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
            G  P+ V+   L D   +      A   L+    +G  PN  +  + I  L +      A
Sbjct: 695  GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 754

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                  + E G+F ++ T+ + + G  K   T L  ++++ +IE G          LI+A
Sbjct: 755  EELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRA 814

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               +GKV E   L  ++   GL+P+   + K+I  +            L  M+     P 
Sbjct: 815  LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPT 874

Query: 269  NFTYEEVINGLCK----SRKRLEA-----------YRVFND---------LKERGYVPDT 304
             +TY  +I GL      + +RL A           Y+  +          L E       
Sbjct: 875  LWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSV 934

Query: 305  VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             +   ++  L   G   +A ++   MI +GL P++  YNS++    R+ N++ A  + K 
Sbjct: 935  QVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKH 994

Query: 365  MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            M  +G       Y  LI  LC   R  EA   FE M  +    D +    LI G  ++G
Sbjct: 995  MSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 1053



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 1/147 (0%)

Query: 280 CKSRKRLEAYRVFND-LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           C S++ +     F D L + G       Y+ ++  L ++G        +  M+ +G+ PN
Sbjct: 325 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 384

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YN++I+  C+  N+ +A+ + K++ +      T TY ++I G C     D A  +F 
Sbjct: 385 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 444

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +MA++G   + +TY+TLI G C  G++
Sbjct: 445 QMAKEGCEPNTVTYSTLINGLCDSGRV 471



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 21/305 (6%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AF +  + +D  G  PN  +    I   C+   ++ A      +K  G   +++T+N  +
Sbjct: 684 AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 742

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K +      +L   +IE G          +I   C +G  S   E+  +++E G +
Sbjct: 743 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 802

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    ++ LI    ++        L   +      PD  TY ++I     S K   A+  
Sbjct: 803 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 862

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + G  P    Y  +I GL     L D R           LP+     S   GY  
Sbjct: 863 LGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR--------LAALPDVVPNCSF--GYQT 912

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D  +    +  ++ +   G +    N L++ L   GR  EA  L   M  +G+  D   
Sbjct: 913 TDQ-DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 971

Query: 412 YNTLI 416
           YN+L+
Sbjct: 972 YNSLL 976



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 205  LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            L+      G+  E  ELL  ++  GL P+  A+N L+      +N      +   M  + 
Sbjct: 940  LVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 999

Query: 265  RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                   Y+E+I  LC+  +R EA   F ++  R + PD V+   +I GL + G+    +
Sbjct: 1000 CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGY----K 1055

Query: 325  KMWFEMIH 332
             +  E +H
Sbjct: 1056 DLCMEFLH 1063


>gi|357509511|ref|XP_003625044.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500059|gb|AES81262.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 521

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/371 (28%), Positives = 177/371 (47%), Gaps = 30/371 (8%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
            LK QN+ +LS++FF W+ +H   S  L + + L   L + R FK A     S   + N 
Sbjct: 75  LLKLQNDAVLSLKFFNWVQTHNPNSHTLHTHSFLLHILTKNRNFKTAQSIF-SKIITTNS 133

Query: 139 NSLE--LYIQCLCESGL---------------IEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           N  E  L+   LC S                 +  A   F K+KE G F ++++ N+ L 
Sbjct: 134 NLFESLLHSYTLCNSSPLVFDTLFKTFAHMNKLRNATDTFVKMKEYGFFPTVESCNAFLS 193

Query: 182 GCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
             + + R +LV   Y  +  +           ++ A+C  G++++  E+L ++ + GL P
Sbjct: 194 SMLYLKRPELVVSFYRQMRRNRISPNVYTINMVVSAYCKLGELNKASEVLEKMKDMGLCP 253

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKRLEAYRV 291
               FN LIS +C+K   G   ++   M+ +N   P+  T+  +ING CK  K  EA RV
Sbjct: 254 NVVTFNSLISGYCDKGLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHEANRV 313

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F+++K     P+ V Y T+I+G  + G       ++ EM    +  +  TYN +I G C+
Sbjct: 314 FSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLILGLCK 373

Query: 352 IDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
               ++A  + KE LDKG       T++ LIAG C+   ++ A+ ++  M + G   +  
Sbjct: 374 EGKTKKAAYMVKE-LDKGNLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFSPNEN 432

Query: 411 TYNTLIQGYCK 421
           T+  L   +CK
Sbjct: 433 TFRMLASAFCK 443



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 115/253 (45%), Gaps = 13/253 (5%)

Query: 101 GFSPDLVSCNVLF----DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++V+ N L     D  +   A KV    +   G  PN  +    I   C+ G + E
Sbjct: 250 GLCPNVVTFNSLISGYCDKGLLGLALKVRDLMMGKNGVFPNVVTFNTLINGFCKEGKLHE 309

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   FS++K   V  ++ T+N+ + G  +   +++   L+          D++    LI 
Sbjct: 310 ANRVFSEMKLANVAPNVVTYNTLINGFGQAGNSEMGIGLFEEMERNKVKADILTYNGLIL 369

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C +GK  +   +++++ +  LVP  + F+ LI+  C + N  R   +  +MV    +P
Sbjct: 370 GLCKEGKTKKAAYMVKELDKGNLVPNASTFSALIAGQCVRNNSERAFLVYRSMVRSGFSP 429

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  T+  + +  CK+     A +V  D+ ER   PD+ + + V  GLC+ G    A  + 
Sbjct: 430 NENTFRMLASAFCKNEDFDGAVQVLRDMLERFMTPDSSILSEVYSGLCRCGRKQFALMLC 489

Query: 328 FEMIHKGLLPNEY 340
            E+  K LLP  +
Sbjct: 490 SEIEAKRLLPQGF 502



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 53/192 (27%), Positives = 90/192 (46%), Gaps = 8/192 (4%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           + F+K+I+      N      LLH+    N +P    ++ +        K   A   F  
Sbjct: 123 SIFSKIIT-----TNSNLFESLLHSYTLCNSSP--LVFDTLFKTFAHMNKLRNATDTFVK 175

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +KE G+ P        +  +  +         + +M    + PN YT N ++  YC++  
Sbjct: 176 MKEYGFFPTVESCNAFLSSMLYLKRPELVVSFYRQMRRNRISPNVYTINMVVSAYCKLGE 235

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE-EMAQKGIFRDVITYN 413
           L +A  + ++M D G     VT+N+LI+G C  G    A  + +  M + G+F +V+T+N
Sbjct: 236 LNKASEVLEKMKDMGLCPNVVTFNSLISGYCDKGLLGLALKVRDLMMGKNGVFPNVVTFN 295

Query: 414 TLIQGYCKEGKI 425
           TLI G+CKEGK+
Sbjct: 296 TLINGFCKEGKL 307


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVVLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A    + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 167/372 (44%), Gaps = 48/372 (12%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHY---GFSPDLVSC---------NVLFDS-------L 116
           F E L+ +      I  F  L + Y   GF  D + C          V FD+       L
Sbjct: 52  FAEILETKGTQTSDIYVFSGLITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHL 111

Query: 117 VEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           ++ + FK+   F + +     P SL  +   +    + G I  A   F  + + G+  S+
Sbjct: 112 MKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSV 171

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
            ++N+ + G IK+                          G + EG+ L   +   G+ P+
Sbjct: 172 VSFNTLMNGYIKL--------------------------GDLDEGFRLKNAMQASGVQPD 205

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              ++ LI+  C++      +EL   M+     P+  T+  +I+G CK+ + + A  ++ 
Sbjct: 206 VYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYK 265

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            +  +   PD + Y T+I+GLCK G L  A+ +  EM  KGL P++ TY ++I G C+  
Sbjct: 266 QMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEG 325

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +LE A    K M+ +      V Y  LI+GLC  GR+ +A  +  EM   G+  ++ TY 
Sbjct: 326 DLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 414 TLIQGYCKEGKI 425
            +I  +CK+G +
Sbjct: 386 MIINEFCKKGDV 397


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   ++M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 152/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +   +MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 162/334 (48%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L + L     F  A+    +++  G   N  +    I+ LC  G IE+A
Sbjct: 368 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 427

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F K+ +MG   ++ T+N+ + G +     +   +L   + E+G          L+  
Sbjct: 428 MVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSG 487

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   GK+       ++++E GL P   ++  LI    +         LL  M      P+
Sbjct: 488 FSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPN 547

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  VINGL K  +  EA ++ + + E+G +P+ + YTT+I GLC+ G    A K++ 
Sbjct: 548 VESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFH 607

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +  LPN YTY+S+I+G C+    +EA+ L KEM  KG     VT+ +LI G  + G
Sbjct: 608 DMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLG 667

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           R D A+ L   M   G   +  TY+ L++G  KE
Sbjct: 668 RIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKE 701



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  GF   L SCN L   L +    + A +    + ++G  P+  +    I  L + G +
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            EA    S++ +  +   + T+ S +LG  +    DL + ++  +++ G          L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   CN+G+V E  ++L +++E G+ P    +   I+  C  ++     EL+  M  R  
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +I+GL +  K   A  +++ + + G VP+TV Y  +I+ LC  G    A K
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 394

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M   G L N  TYN +I G C   ++E+A  L ++ML  G   T VTYNTLI G  
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G  + A  L + M + G   D  TYN L+ G+ K GK+
Sbjct: 455 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 189/424 (44%), Gaps = 52/424 (12%)

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLK----QQNNVLLSIRFFQWLHSHYGFSPDLV 107
           + K R  + +LS I  ++ +  +F    L     +  N+ L+   F  +    G  P+ V
Sbjct: 211 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKE-GCDPNSV 269

Query: 108 SCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           + + L + L        A+D L+     G  P   +  L I  LC     EEA    +++
Sbjct: 270 TYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARM 329

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------------- 204
           K+ G   +++T+ + + G  ++ + ++   LYH +++ G                     
Sbjct: 330 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 389

Query: 205 ------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                                   +I+  C  G + +   L  ++L+ G +P    +N L
Sbjct: 390 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL 449

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+ +  K N    + LL  M      PD +TY E+++G  K  K   A   F ++ E G 
Sbjct: 450 INGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+ V YT +I G  K G +  A  +   M   G  PN  +YN++I+G  + +   EA++
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEK 569

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  +M+++G     +TY TLI GLC +GRT  A+ +F +M ++    ++ TY++LI G C
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 629

Query: 421 KEGK 424
           +EGK
Sbjct: 630 QEGK 633



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 104/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I+A  N+ ++    + L ++   G      + N L+ +  + +       L   M+   
Sbjct: 134 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 193

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   T+  +IN L K  K  EA  + + + +    PD   YT++I G C+   L  A 
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAF 253

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M+ +G  PN  TY+++I+G C    ++EA  + +EM++KG   T  TY   I  L
Sbjct: 254 GVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 313

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C     +EA  L   M ++G   +V TY  LI G  + GK+
Sbjct: 314 CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKL 354



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 81/199 (40%), Gaps = 12/199 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ VS   L D   +     +A+  L   +  G +PN  S    I  L +     EA
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------LIESGYLIQA 208
                K+ E G+  ++ T+ + + G  +  RT   +K++HD         L     LI  
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK  E   LL+++   GL P+   F  LI  F           LL  MV     P+
Sbjct: 628 LCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPN 687

Query: 269 NFTYEEVINGLCKSRKRLE 287
             TY  ++ GL K    LE
Sbjct: 688 YRTYSVLLKGLQKECLLLE 706


>gi|359481971|ref|XP_003632699.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
           mitochondrial-like [Vitis vinifera]
          Length = 819

 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/329 (28%), Positives = 161/329 (48%), Gaps = 29/329 (8%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           YGF PD  +   LFD  ++      ++   +     G      +  + +  LC+ G +E+
Sbjct: 316 YGFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEK 375

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     K  E G+         A +G            ++ + I +GY     C  G ++
Sbjct: 376 AEEVLKKFLENGL---------APVG------------VFFNTIVNGY-----CQVGDIN 409

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           + Y  + ++   GL P +  +N L+ +FCE KN     + +  MV +   P+  TY  +I
Sbjct: 410 KAYTTIEKMEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLI 469

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G  +S      +++  +++++G  P+ + Y  +I+ LCK   + +A  +  +M+H+G++
Sbjct: 470 DGYGRSCLFDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVV 529

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN   YN +I G C    L++A R   EM+ +    T VTYN LI GLC  G+  EA +L
Sbjct: 530 PNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENL 589

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             E+ +KG+  DVITYN+LI GY   G +
Sbjct: 590 ASEITRKGLSFDVITYNSLISGYSSAGNV 618



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 142/306 (46%), Gaps = 10/306 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG------ 182
           +++ G  PN  +    ++  CE   +EEA     K+ E GV  +++T+N+ + G      
Sbjct: 418 MEAVGLRPNHVTYNSLVKKFCEMKNMEEAEKCIKKMVEKGVLPNVETYNTLIDGYGRSCL 477

Query: 183 ---CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
              C +I        L  ++I  G LI   C D  + E   +L  ++  G+VP    +N 
Sbjct: 478 FDRCFQILEEMEKKGLKPNVISYGCLINCLCKDANILEAEVILGDMVHRGVVPNAQIYNM 537

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI   C              MVAR   P   TY  +INGLCK  K +EA  + +++  +G
Sbjct: 538 LIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILINGLCKKGKVMEAENLASEITRKG 597

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
              D + Y ++I G    G +  A +++  M   G+ P   TY+ +I G C  + L   +
Sbjct: 598 LSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKPTLNTYHRLIAG-CGKEGLVLVE 656

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           ++++EML        V YN LI     HG   +A  L   M  +GI  D +TYN LI G+
Sbjct: 657 KIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLHSAMEAQGIQPDKMTYNCLILGH 716

Query: 420 CKEGKI 425
            KEG++
Sbjct: 717 FKEGRM 722



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/303 (24%), Positives = 146/303 (48%), Gaps = 9/303 (2%)

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            +   G  P+  SL L+++ L  +   E+    FS++ E G+      +  A+   +K+ 
Sbjct: 137 LMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLG 196

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
                 +L   +   G          +I   C + ++ +  +L  ++L+  + P    +N
Sbjct: 197 DLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYN 256

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI  +C+         +   M   N  P   T+  ++NGLC+++   EA RV  +++  
Sbjct: 257 TLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVY 316

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G+VPD   YTT+  G  K G +  +  +  E + KG+   +YT + +++  C+  N+E+A
Sbjct: 317 GFVPDRFTYTTLFDGHLKCGNVDASITLSEEAVRKGVQILDYTCSILLNALCKEGNMEKA 376

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           + + K+ L+ G     V +NT++ G C  G  ++AY   E+M   G+  + +TYN+L++ 
Sbjct: 377 EEVLKKFLENGLAPVGVFFNTIVNGYCQVGDINKAYTTIEKMEAVGLRPNHVTYNSLVKK 436

Query: 419 YCK 421
           +C+
Sbjct: 437 FCE 439



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 1/222 (0%)

Query: 205 LIQAFCNDGK-VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           ++ + C++ K VSE  EL   + +DG++P   + N  +      K +    +L   +V  
Sbjct: 117 MLLSICSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKRYEDTLQLFSEIVES 176

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD F Y + I    K      A  +   +K  G  P   +Y  VI GLCK   + DA
Sbjct: 177 GLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNVVIGGLCKEKRMKDA 236

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K++ EM+ + + PN  TYN++I GYC++  LEEA  + + M  +    T +T+N+L+ G
Sbjct: 237 EKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVENVEPTIITFNSLLNG 296

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC     +EA  + EEM   G   D  TY TL  G+ K G +
Sbjct: 297 LCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNV 338



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 149/306 (48%), Gaps = 11/306 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L ST   P  + + L I    ES ++ E+   +  +K+ GV  S+ + N  L   +   R
Sbjct: 105 LSSTPMKPLFSDMLLSI--CSESKMVSESAELYMLMKKDGVLPSVASLNLFLESLVSTKR 162

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            +   +L+ +++ESG           IQA    G +    EL+  +   G+ P    +N 
Sbjct: 163 YEDTLQLFSEIVESGLRPDQFMYGKAIQAAVKLGDLKRAIELMTCMKRGGVSPGVFVYNV 222

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +I   C++K      +L   M+ R  AP+  TY  +I+G CK  +  EA+ +   +K   
Sbjct: 223 VIGGLCKEKRMKDAEKLFDEMLDRRVAPNRITYNTLIDGYCKVGQLEEAFNIRERMKVEN 282

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P  + + ++++GLC+   + +A+++  EM   G +P+ +TY ++  G+ +  N++ + 
Sbjct: 283 VEPTIITFNSLLNGLCRAQMMEEAQRVLEEMEVYGFVPDRFTYTTLFDGHLKCGNVDASI 342

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L +E + KG      T + L+  LC  G  ++A  + ++  + G+    + +NT++ GY
Sbjct: 343 TLSEEAVRKGVQILDYTCSILLNALCKEGNMEKAEEVLKKFLENGLAPVGVFFNTIVNGY 402

Query: 420 CKEGKI 425
           C+ G I
Sbjct: 403 CQVGDI 408



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 148/337 (43%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFD----SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P++ + N L D    S +  R F++ ++ ++  G  PN  S    I CLC+   I E
Sbjct: 457 GVLPNVETYNTLIDGYGRSCLFDRCFQI-LEEMEKKGLKPNVISYGCLINCLCKDANILE 515

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTD--------LVWKLYHDLIESGYLIQ 207
           A      +   GV  + + +N  + G CI     D        +  ++   L+    LI 
Sbjct: 516 AEVILGDMVHRGVVPNAQIYNMLIDGSCIAGKLKDAFRFFDEMVAREIVPTLVTYNILIN 575

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GKV E   L  ++   GL  +   +N LIS +    N  +  EL  TM      P
Sbjct: 576 GLCKKGKVMEAENLASEITRKGLSFDVITYNSLISGYSSAGNVQKALELYETMKKSGIKP 635

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I G C     +   +++ ++ +   VPD V+Y  +IH   + G +  A  + 
Sbjct: 636 TLNTYHRLIAG-CGKEGLVLVEKIYQEMLQMNLVPDRVIYNALIHCYVEHGDVQKACSLH 694

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  +G+ P++ TYN +I G+ +   + + K L  +M  +G    T TY+ LI G C  
Sbjct: 695 SAMEAQGIQPDKMTYNCLILGHFKEGRMHKVKNLVNDMKIRGLIPKTETYDILIVGHCKL 754

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              D AY  + EM + G    V   + LI G  +EG+
Sbjct: 755 KDFDGAYVWYREMFENGFTPSVSICDNLITGLREEGR 791


>gi|414586743|tpg|DAA37314.1| TPA: hypothetical protein ZEAMMB73_981845 [Zea mays]
          Length = 524

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/347 (27%), Positives = 165/347 (47%), Gaps = 45/347 (12%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSA 179
           A +V  +  +  G +P+  +    I   C+ G +E+A   F ++   G V  S   +N+ 
Sbjct: 166 ALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNAL 225

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           + G   + + D+  +   D+++ G          L+ A   D + S+ Y +L ++ ++G 
Sbjct: 226 IGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGF 285

Query: 231 VPENTAFNKLISRFC----EKKNF----------------------------GRVSE--- 255
            P+   +N LI+ +C    EKK                              G+V E   
Sbjct: 286 SPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQVQETDR 345

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L +  V +   PD   Y  +IN  C       AY +  +++++   PD + Y T++ G C
Sbjct: 346 LFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFC 405

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
            +G L +AR +  EM  +G+ P+  +YN++I GY    ++++A R+  EM+DKG+  T +
Sbjct: 406 LLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLM 465

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           TYN LI GLC   + D+A +L +EM  KGI  D  TY +LI+G   E
Sbjct: 466 TYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTE 512



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 148/303 (48%), Gaps = 13/303 (4%)

Query: 136 PNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK-TWNSALLGCIKIDRTDLV 192
           P PN++     I   C  G ++ A     +++E G     K T+ + + G  KI R +  
Sbjct: 143 PRPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDA 202

Query: 193 WKLYHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
            K++ +++  G           LI  +C+ GK+    +    +++ G+      +N L+ 
Sbjct: 203 VKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDVALQYREDMVQRGIAMTVATYNLLMH 262

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
                        +L  M     +PD FTY  +ING CK     +A  VF ++ ++G   
Sbjct: 263 ALFMDARASDAYAVLEEMQKNGFSPDVFTYNILINGYCKEGNEKKALEVFEEMSQKGVRA 322

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
             V YT++I+   + G + +  +++   + KG+ P+   YN++I+ +C   ++E A  + 
Sbjct: 323 TAVTYTSLIYVFSRKGQVQETDRLFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIM 382

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            EM  K      +TYNTL+ G CL GR DEA  L +EM ++GI  D+++YNTLI GY  +
Sbjct: 383 AEMEKKRIPPDDMTYNTLMRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMK 442

Query: 423 GKI 425
           G I
Sbjct: 443 GDI 445



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 115/223 (51%), Gaps = 6/223 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C  GK     ELLRQ+      P    +N +I+ FC +       E++  M  R 
Sbjct: 122 MLRHLCATGKPVRALELLRQMPR----PNAVTYNTVIAGFCARGRVQAALEVMREMRERG 177

Query: 265 R-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGD 322
             APD +TY  +I+G CK  +  +A +VF+++  +G V P  VMY  +I G C +G L  
Sbjct: 178 GIAPDKYTYATLISGWCKIGRMEDAVKVFDEMLTKGEVAPSAVMYNALIGGYCDVGKLDV 237

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +   +M+ +G+     TYN ++H         +A  + +EM   G+     TYN LI 
Sbjct: 238 ALQYREDMVQRGIAMTVATYNLLMHALFMDARASDAYAVLEEMQKNGFSPDVFTYNILIN 297

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C  G   +A  +FEEM+QKG+    +TY +LI  + ++G++
Sbjct: 298 GYCKEGNEKKALEVFEEMSQKGVRATAVTYTSLIYVFSRKGQV 340



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/284 (27%), Positives = 121/284 (42%), Gaps = 58/284 (20%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           GFSPD+ + N+L                                I   C+ G  ++A   
Sbjct: 284 GFSPDVFTYNIL--------------------------------INGYCKEGNEKKALEV 311

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           F ++ + GV  +  T+ S                          LI  F   G+V E   
Sbjct: 312 FEEMSQKGVRATAVTYTS--------------------------LIYVFSRKGQVQETDR 345

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L    ++ G+ P+   +N LI+  C   +  R  E++  M  +   PD+ TY  ++ G C
Sbjct: 346 LFNVAVKKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTLMRGFC 405

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
              +  EA  + +++ +RG  PD V Y T+I G    G + DA ++  EM+ KG  P   
Sbjct: 406 LLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGFNPTLM 465

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           TYN++I G C+I   ++A+ L KEM+ KG      TY +LI GL
Sbjct: 466 TYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGL 509



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 6/152 (3%)

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ++ L  S     A+ +F D+        T  +  ++  LC  G    A     E++ +  
Sbjct: 88  LHPLLSSLPSAPAFALFADIYRLRLPLCTTTFNIMLRHLCATGKPVRA----LELLRQMP 143

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAY 394
            PN  TYN++I G+C    ++ A  + +EM ++ G      TY TLI+G C  GR ++A 
Sbjct: 144 RPNAVTYNTVIAGFCARGRVQAALEVMREMRERGGIAPDKYTYATLISGWCKIGRMEDAV 203

Query: 395 HLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
            +F+EM  KG +    + YN LI GYC  GK+
Sbjct: 204 KVFDEMLTKGEVAPSAVMYNALIGGYCDVGKL 235



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 13/176 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           R F VA+      G  P+       I   C  G +E A+   +++++  +     T+N+ 
Sbjct: 345 RLFNVAV----KKGIRPDVVMYNALINSHCTGGDMERAYEIMAEMEKKRIPPDDMTYNTL 400

Query: 180 LLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230
           + G   + R D    L           DL+    LI  +   G + +   +  ++++ G 
Sbjct: 401 MRGFCLLGRLDEARTLIDEMTKRGIQPDLVSYNTLISGYSMKGDIKDALRVRDEMMDKGF 460

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
            P    +N LI   C+ +       L+  MVA+   PD+ TY  +I GL    +R+
Sbjct: 461 NPTLMTYNALIQGLCKIRQGDDAENLMKEMVAKGITPDDSTYISLIEGLTTEDERM 516


>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 154/328 (46%), Gaps = 13/328 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +++  +L ++ +       AM  LD   S G  P+  +  + +  +C+ G+++ AF  
Sbjct: 214 PTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEF 273

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            S++ + G    + T+N  L   +   + +   KL  D++  G          LI A C 
Sbjct: 274 LSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCR 333

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGK+ E   +L+ + E  L P+  +++ LIS  C +       E L  M++    PD  +
Sbjct: 334 DGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILS 393

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK+    EA  +F  L E G  P+   Y T+   L   G    A  M  EM+
Sbjct: 394 YNSILASLCKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEML 453

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTLIAGLCLHGRT 390
             G+ P+E TYNS+I   CR   +++A  L  +M +    + TV +YNT++ GLC   R 
Sbjct: 454 SNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRI 513

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            +A  +   M  +G   +  TY  LIQG
Sbjct: 514 IDAIEVLAAMVNEGCLPNETTYTLLIQG 541



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 162/387 (41%), Gaps = 45/387 (11%)

Query: 45  KQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLH-----SH 99
           +Q  ++  TKP            ++F D      F+K  N    S ++ + L+      +
Sbjct: 56  QQQFRVNETKPTKHDQ------DYDFRDT----NFMKTLNRSCKSAKYDESLYFLQHMVN 105

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
            G+ PD++ C  L       +  + A   M+ L+  G  P+  +    I   C++  ++ 
Sbjct: 106 RGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHG-KPDVFAYNAVISGFCKADRVDH 164

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     ++K+ G    + T+N                           LI  FC  G++ 
Sbjct: 165 ASKVLDRMKKRGFEPDVVTYN--------------------------ILIGNFCGRGRLD 198

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
               ++ Q+L+D   P    +  LI     +       +LL  M++R   PD +TY  V+
Sbjct: 199 LALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVV 258

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NG+CK      A+   + + + G V     Y  ++  L   G      K+  +M+ KG  
Sbjct: 259 NGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCE 318

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN  TY+++I   CR   ++EAK + K M +K       +Y+ LI+ LC  G+ D A   
Sbjct: 319 PNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEF 378

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
            ++M   G   D+++YN+++   CK G
Sbjct: 379 LDDMISGGHLPDILSYNSILASLCKNG 405



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 153/349 (43%), Gaps = 14/349 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           +I+  + L  H    PD+ + N +     +A     A   LD     GF P+  +  + I
Sbjct: 131 AIQVMEILEKHG--KPDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILI 188

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
              C  G ++ A     +L +     ++ T+   +   I     D   KL  +++  G  
Sbjct: 189 GNFCGRGRLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLR 248

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   ++   C +G +   +E L ++ ++G V   + +N L+     +  +    +L
Sbjct: 249 PDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWEYGEKL 308

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+ +   P+  TY  +I  LC+  K  EA  V   +KE+   PD   Y  +I  LC+
Sbjct: 309 MSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMKEKALAPDGYSYDPLISALCR 368

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +  A +   +MI  G LP+  +YNS++   C+  N +EA  + +++ + G      +
Sbjct: 369 EGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEALNIFEKLGEVGCPPNAGS 428

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           YNTL   L   G    A  +  EM   GI  D ITYN+LI   C++G +
Sbjct: 429 YNTLFGALWSSGDKIRALGMILEMLSNGIDPDEITYNSLISCLCRDGLV 477



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 126/264 (47%), Gaps = 38/264 (14%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D+I    LI+ F N  K+ +  +++ ++LE    P+  A+N +IS FC+       S++L
Sbjct: 111 DVILCTKLIKGFFNMKKIEKAIQVM-EILEKHGKPDVFAYNAVISGFCKADRVDHASKVL 169

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             M  R   PD  TY  +I   C  R RL+ A RV + L +    P  + YT +I     
Sbjct: 170 DRMKKRGFEPDVVTYNILIGNFC-GRGRLDLALRVMDQLLKDNCKPTVITYTILIEATIT 228

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA------------------ 358
            G + +A K+  EM+ +GL P+ YTYN +++G C+   L+ A                  
Sbjct: 229 QGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLSRISKNGCVAGVST 288

Query: 359 -----------------KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
                            ++L  +ML KG     +TY+TLI  LC  G+ DEA ++ + M 
Sbjct: 289 YNILLRDLLNEGKWEYGEKLMSDMLVKGCEPNPITYSTLITALCRDGKIDEAKNVLKVMK 348

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           +K +  D  +Y+ LI   C+EGK+
Sbjct: 349 EKALAPDGYSYDPLISALCREGKV 372



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 91/192 (47%), Gaps = 1/192 (0%)

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           +T F K ++R C+   +      L  MV R   PD     ++I G    +K  +A +V  
Sbjct: 77  DTNFMKTLNRSCKSAKYDESLYFLQHMVNRGYKPDVILCTKLIKGFFNMKKIEKAIQVME 136

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            L++ G  PD   Y  VI G CK   +  A K+   M  +G  P+  TYN +I  +C   
Sbjct: 137 ILEKHGK-PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRG 195

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            L+ A R+  ++L      T +TY  LI      G  DEA  L +EM  +G+  D  TYN
Sbjct: 196 RLDLALRVMDQLLKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYN 255

Query: 414 TLIQGYCKEGKI 425
            ++ G CKEG +
Sbjct: 256 VVVNGMCKEGML 267



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 102/230 (44%), Gaps = 30/230 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
             +PD  S + L  +L       +A++FLD   S G  P+  S    +  LC++G  +EA
Sbjct: 351 ALAPDGYSYDPLISALCREGKVDLAIEFLDDMISGGHLPDILSYNSILASLCKNGNADEA 410

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F KL E+G   +  ++N+                L+  L  SG  I+A         
Sbjct: 411 LNIFEKLGEVGCPPNAGSYNT----------------LFGALWSSGDKIRAL-------- 446

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PDNFTYEEVI 276
              ++ ++L +G+ P+   +N LIS  C      +  ELL  M    +  P   +Y  V+
Sbjct: 447 --GMILEMLSNGIDPDEITYNSLISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVL 504

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
            GLCK ++ ++A  V   +   G +P+   YT +I G+   GW  DA ++
Sbjct: 505 LGLCKVQRIIDAIEVLAAMVNEGCLPNETTYTLLIQGIGFAGWRYDAMEL 554


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL++ N+L +              L      G+ P+  +L   I+ LC  G +++A
Sbjct: 89  GIQPDLITLNILINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKA 148

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                KL   G   +  ++ + + G  KI  T    K            D++    +I A
Sbjct: 149 LHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDA 208

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    VSE Y L  ++   G+  +   +N LI  FC          LL+ MV +   P+
Sbjct: 209 MCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPN 268

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++ LCK  K  EA  V   + +    PD + Y+T++ G   +  +  A+ ++ 
Sbjct: 269 VYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFN 328

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G+ P+ +TY  +I+G+C+   ++EA  L KEM  K      VTY++LI GLC  G
Sbjct: 329 AMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSG 388

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           R    + L +EM  +G   DVITY++LI G CK G +
Sbjct: 389 RISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHL 425



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 165/347 (47%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           + LH H      GF  + VS   L + + +    + A+ FL   D     P+       I
Sbjct: 147 KALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAAIKFLRKIDGRLTKPDVVMYNTII 206

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI----- 200
             +C+  L+ EA+  FS++   G+   + T+N+ + G   + +      L ++++     
Sbjct: 207 DAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTIN 266

Query: 201 ----ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+ A C +GKV E   +L  +L+  + P+   ++ L+  +       +   +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M      PD  TY  +ING CK++   EA  +F ++ ++  VP  V Y+++I GLCK
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +     +  EM  +G   +  TY+S+I G C+  +L+ A  L  +M D+       T
Sbjct: 387 SGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  L+ GLC  GR  +A  +F+++  KG   +V TYN +I G+CK+G
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 150/337 (44%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ N L   L      K A+ F D   + GF  N  S    I  +C+ G    A
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRAA 183

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+        +  +N+ +    K       + L+          D++    LI  
Sbjct: 184 IKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYG 243

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ E   LL +++   + P    +N L+   C++        +L  M+     PD
Sbjct: 244 FCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD 303

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G     +  +A  VFN +   G  PD   YT +I+G CK   + +A  ++ 
Sbjct: 304 VITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFK 363

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K ++P   TY+S+I G C+   +     L  EM D+G     +TY++LI GLC +G
Sbjct: 364 EMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNG 423

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  LF +M  + I  ++ T+  L+ G CK G++
Sbjct: 424 HLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRL 460



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 150/318 (47%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S D+V+ N L          K A+  L+       +PN  +  + +  LC+ G ++EA
Sbjct: 229 GISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + +  V   + T+++ + G   +        +++ +   G          LI  
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +  V E   L +++ +  +VP    ++ LI   C+      V +L+  M  R +  D
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPAD 408

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+     A  +FN +K++   P+   +T ++ GLCK G L DA++++ 
Sbjct: 409 VITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQ 468

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ KG   N YTYN MI+G+C+   LEEA  +  +M D G      T+ T+I  L    
Sbjct: 469 DLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKD 528

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A  L  +M  +G+ 
Sbjct: 529 ENDKAEKLLRQMIARGLL 546



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 66/194 (34%), Positives = 102/194 (52%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FNK++  F + K++     L H +  +   PD  T   +IN  C   +    + V
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + +RGY PDTV   T+I GLC  G +  A     +++ +G   N+ +Y ++I+G C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           I +   A +  +++  +      V YNT+I  +C +    EAY LF EMA KGI  DV+T
Sbjct: 177 IGDTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVT 236

Query: 412 YNTLIQGYCKEGKI 425
           YNTLI G+C  GK+
Sbjct: 237 YNTLIYGFCIVGKL 250



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 109/227 (48%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +I+   ++ +F      S    L  ++   G+ P+    N LI+ FC          +L 
Sbjct: 59  IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLA 118

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            ++ R   PD  T   +I GLC   +  +A    + L  +G+  + V Y T+I+G+CK+G
Sbjct: 119 KILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIG 178

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A K   ++  +   P+   YN++I   C+   + EA  L  EM  KG     VTYN
Sbjct: 179 DTRAAIKFLRKIDGRLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYN 238

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G C+ G+  EA  L  EM  K I  +V TYN L+   CKEGK+
Sbjct: 239 TLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKV 285



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN +    + P  + +  ++    KM     A  +   +  KG+ P+  T N +I
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C +  +     +  ++L +GY   TVT NTLI GLCL G+  +A H  +++  +G  
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 407 RDVITYNTLIQGYCKEG 423
            + ++Y TLI G CK G
Sbjct: 162 LNQVSYATLINGVCKIG 178



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA   +  M+     P    +N ++  + ++ +   A  L   +  KG     +T N LI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C  G+    + +  ++ ++G   D +T NTLI+G C +G++
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQV 145


>gi|414887654|tpg|DAA63668.1| TPA: hypothetical protein ZEAMMB73_339081 [Zea mays]
          Length = 1098

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 144/300 (48%), Gaps = 25/300 (8%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D L   GFSPN  +  L ++  C    +EEA          GV   I+           
Sbjct: 301 LDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEA---------EGVVQEIRKNK-------- 343

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
                   +L  D    G +I  +C  G++ +   LL ++++  L      +N +I+ +C
Sbjct: 344 --------QLVVDEAVFGAVINGYCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYC 395

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +         +LH M      PD ++Y  +++G CK     +A+  +N +   G+   T+
Sbjct: 396 KLGRMVEAHNILHEMTGVGVRPDTYSYNSLVDGYCKKGLMNKAFETYNTMLRNGFAATTL 455

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  ++ G C +G + DA ++WF M+ KG+ PNE + ++++ G+ +    E+A  L KE 
Sbjct: 456 TYNALLKGFCSLGSIDDALRLWFLMLKKGIAPNEISCSTLLDGFFKSGKTEKALNLWKET 515

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L +G  + T T+NT+I GLC   R  EA  L ++M Q     D+ITY TL  GYCK G +
Sbjct: 516 LARGLAKNTTTFNTVINGLCKIERMPEAEELVDKMKQWRCPPDIITYRTLFSGYCKIGDM 575



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 166/396 (41%), Gaps = 73/396 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ +SC+ L D   ++   + A++    T   G + N  +    I  LC+   + EA
Sbjct: 484 GIAPNEISCSTLLDGFFKSGKTEKALNLWKETLARGLAKNTTTFNTVINGLCKIERMPEA 543

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------------------ 199
                K+K+      I T+ +   G  KI   D   ++ ++L                  
Sbjct: 544 EELVDKMKQWRCPPDIITYRTLFSGYCKIGDMDRASRILNELENLGFAPTIEFFNSLITG 603

Query: 200 --------------------------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                     +  G LI  +C +G +   Y L  +++E GLVP 
Sbjct: 604 HFIAKQHGKVNDILFEMSNRGLSPNTVAYGALIAGWCKEGDLHTAYNLYLEMIEKGLVPN 663

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD------------NFT---------- 271
               + L+S F  K  F   + +L  +V  +  PD            NF           
Sbjct: 664 LFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGKVANFIDTVAGGNHHS 723

Query: 272 ----YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
               +  VI GLCK  +  +A  +  DLK++G+V D   Y+++IHG    G++  A  + 
Sbjct: 724 AKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIHGCSASGFVDVAFDLR 783

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  GL PN  TYNS+I+G C+   L  A  L K++  KG     +TYNTLI   C  
Sbjct: 784 DTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISPNAITYNTLIDKHCKD 843

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G   EA+ L + M ++GI   V TY+ LI G C +G
Sbjct: 844 GYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQG 879



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 36/255 (14%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A  N G++    ++  ++   G      + N +++R  +  + G    +   M    
Sbjct: 179 LLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQMQRAG 238

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD FT   +    CK +  + A     ++ + G   + V Y  V++G C++G   DAR
Sbjct: 239 ALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQTNDAR 298

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK------------------------- 359
           +M   +  +G  PN  TY  ++ GYC   N+EEA+                         
Sbjct: 299 RMLDSLPGRGFSPNIVTYTLLVKGYCNEKNMEEAEGVVQEIRKNKQLVVDEAVFGAVING 358

Query: 360 -----------RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
                      RL  EM+D         YN +I G C  GR  EA+++  EM   G+  D
Sbjct: 359 YCQMGRMEDAARLLNEMVDSRLQVNLFVYNIMINGYCKLGRMVEAHNILHEMTGVGVRPD 418

Query: 409 VITYNTLIQGYCKEG 423
             +YN+L+ GYCK+G
Sbjct: 419 TYSYNSLVDGYCKKG 433



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/329 (23%), Positives = 126/329 (38%), Gaps = 41/329 (12%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA 125
           P+  F + L    F+ +Q+  +  I F     S+ G SP+ V+   L     +      A
Sbjct: 592 PTIEFFNSLITGHFIAKQHGKVNDILFEM---SNRGLSPNTVAYGALIAGWCKEGDLHTA 648

Query: 126 MDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT------- 175
            +    +   G  PN       + C    G  +EA      L    +   I         
Sbjct: 649 YNLYLEMIEKGLVPNLFICSSLVSCFYRKGKFDEANLVLQNLVGTDMIPDISAPRLEIGK 708

Query: 176 -------------------WNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                              WN  + G  K+ R +    L  DL + G+         LI 
Sbjct: 709 VANFIDTVAGGNHHSAKIMWNIVIFGLCKLGRIEDAKNLLADLKDKGFVADNFTYSSLIH 768

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G V   ++L   +L  GL P    +N LI   C+     R   L   +  +  +P
Sbjct: 769 GCSASGFVDVAFDLRDTMLSVGLTPNIVTYNSLIYGLCKSGELSRAVSLFKKLWTKGISP 828

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+  CK     EA+++   + E G  P    Y+ +I+GLC  G++ +A K+ 
Sbjct: 829 NAITYNTLIDKHCKDGYITEAFKLKQRMIEEGIHPTVFTYSILINGLCTQGYMEEAIKLL 888

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +MI   + PN  TY ++I GY R ++++
Sbjct: 889 DQMIENNVDPNYVTYWTLIQGYVRCESVD 917



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 78/152 (51%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +++ ++  L  + +   A +VF++++  G         ++++ L + G LG    ++ +M
Sbjct: 175 SFDLLLRALANAGQLDGALQVFDEMRTLGCRLSMRSCNSILNRLAQTGDLGATVAVFEQM 234

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
              G LP+++T   M   YC++  +  A    +EM   G     V Y+ ++ G C  G+T
Sbjct: 235 QRAGALPDKFTVAIMAKAYCKVKGVVHALEFVEEMTKMGVEVNLVAYHAVMNGYCEVGQT 294

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           ++A  + + +  +G   +++TY  L++GYC E
Sbjct: 295 NDARRMLDSLPGRGFSPNIVTYTLLVKGYCNE 326


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 164/353 (46%), Gaps = 32/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           GF PD  + + +   L  A   KV   FL        G +P+  +  + I   C++GLIE
Sbjct: 283 GFVPDTSTYSKVITFLCHAT--KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIE 340

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A   F +++ +G   ++ T+ + +   +K  +      ++H ++++G          L+
Sbjct: 341 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 400

Query: 207 QAFCNDGKVSEGYELLRQVL--------------ED--GLVPENTAFNKLISRFCEKKNF 250
              C  G +S+ +E+  +++              ED   L P    +  L+   C+    
Sbjct: 401 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 460

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               ELL  M++    P++  Y+ +I+G CK+ K   A  VF  + + GY+P    YT++
Sbjct: 461 DHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSL 520

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I  + K G L  A K+  +M+     PN  TY +MI G CRI   E+A +L   M +KG 
Sbjct: 521 IDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGC 580

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               VTY  LI GL   G+ D +  LF +M++KG   + +TY  LI   C  G
Sbjct: 581 SPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 633



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +AF++  + +   GF P+ ++    I  LC +  +E+AF  F ++K +GV   + T+   
Sbjct: 271 KAFQLIKEMM-RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 329

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K    +    L+ ++   G          LI A+    +V +  ++  ++++ G 
Sbjct: 330 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 389

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----------------APDNFTYEE 274
            P +  +  L+   C+  N  +  E+   ++  +                 AP+  TY  
Sbjct: 390 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 449

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLCK+ K   A+ + + +   G  P+ ++Y  +I G CK G +  A++++ +M   G
Sbjct: 450 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 509

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
            LP+ +TY S+I    +   L+ A ++  +ML        VTY  +I GLC  G +++A 
Sbjct: 510 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 569

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M +KG   +V+TY  LI G  K GKI
Sbjct: 570 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKI 600



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 147/335 (43%), Gaps = 16/335 (4%)

Query: 94  QWLHSH---YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQC 147
           QWL       G SP +V+   L  + ++A+    A D    +   G  PN  +    +  
Sbjct: 343 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 402

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           LC++G I +AF  ++KL      G+  + +S      + DR  L      +++  G L+ 
Sbjct: 403 LCKAGNISKAFEVYAKL-----IGTSDSADSDFYFPCE-DRHTLA----PNVVTYGALVD 452

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   KV   +ELL  +L  G  P +  ++ LI  FC+        E+   M      P
Sbjct: 453 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 512

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+ + K  +   A +V + + +    P+ V YT +I GLC++G    A K+ 
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  KG  PN  TY ++I G  +   ++ +  L  +M  KG     VTY  LI  LC  
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 632

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G  D+A  L  EM Q    + +  Y   IQG+ K 
Sbjct: 633 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 667



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/414 (21%), Positives = 163/414 (39%), Gaps = 67/414 (16%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN 137
           + L     V L  R  Q   S  GF  D  +      +L +   +  A+D ++   F  +
Sbjct: 48  QVLSSAGQVDLGFRV-QKEMSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLD 106

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
                  I  L E+   +EA     +++      ++ T+ + L G +K  +     ++ +
Sbjct: 107 TVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIIN 166

Query: 198 DLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            ++  G          L+ ++CN+   +  Y+LL ++   G  P    +N  I   C ++
Sbjct: 167 MMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQE 226

Query: 249 -------------------------------NFGR----------VSELLHTMVARNRAP 267
                                          NF R            +L+  M+ +   P
Sbjct: 227 KLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVP 286

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY +VI  LC + K  +A+ +F ++K  G  PD   YT +I   CK G +  A+ ++
Sbjct: 287 DTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLF 346

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G  P   TY ++IH Y +   + +A  +   M+D G     VTY  L+ GLC  
Sbjct: 347 EEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKA 406

Query: 388 GRTDEAYHLFEEMA----------------QKGIFRDVITYNTLIQGYCKEGKI 425
           G   +A+ ++ ++                 +  +  +V+TY  L+ G CK  K+
Sbjct: 407 GNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 460



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 147/365 (40%), Gaps = 64/365 (17%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           F+      +  +P++V+   L D L +A     A + LD   S+G  PN    +  I   
Sbjct: 430 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 489

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C++G I+ A   F ++ + G   S+ T+ S                          LI  
Sbjct: 490 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTS--------------------------LIDR 523

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              DG++    ++L Q+L+D   P    +  +I   C      +  +LL  M  +  +P+
Sbjct: 524 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 583

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GL K+ K   +  +F  +  +G  P+ V Y  +I+ LC  G L  AR +  
Sbjct: 584 VVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 643

Query: 329 EMIHK---------------------------------GLLPNEYTYNSMIHGYCRIDNL 355
           EM                                    G +P    Y  +I  + +   L
Sbjct: 644 EMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRL 703

Query: 356 EEAKRLHKEMLDKGYGETTVT--YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           E A  LHKEM++      T    Y +LI  LCL  + +EA+ L+ EM ++G   ++  + 
Sbjct: 704 EIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV 763

Query: 414 TLIQG 418
            LI+G
Sbjct: 764 CLIKG 768



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/318 (24%), Positives = 136/318 (42%), Gaps = 26/318 (8%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE---------MGVFGSI---- 173
           D L   G+ P+  +    +Q L  +G ++  F    ++ E         +G F       
Sbjct: 29  DPLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKE 88

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
             W  AL     I+R D  +KL  D +   ++I          E    L ++  +  +P 
Sbjct: 89  GRWADAL---DMIERED--FKL--DTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPN 141

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +  L+S F +KK  G    +++ M+     P+   +  +++  C  +    AY++ N
Sbjct: 142 VVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLN 201

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGD------ARKMWFEMIHKGLLPNEYTYNSMIH 347
            +   G  P  V+Y   I  +C    L        A K++ EM+    + N+    +   
Sbjct: 202 RMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFAR 261

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C +   ++A +L KEM+ KG+   T TY+ +I  LC   + ++A+ LF+EM   G+  
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 408 DVITYNTLIQGYCKEGKI 425
           DV TY  LI  +CK G I
Sbjct: 322 DVYTYTILIDSFCKAGLI 339



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 40/255 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   L D L +A    +++D    +   G SPN  +  + I  LC +GL+++A
Sbjct: 579 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 638

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--LIQAFCNDGKV 215
                ++K+                          W  Y      GY   IQ F      
Sbjct: 639 RLLLGEMKQT------------------------YWPKYL----QGYRCAIQGFSKSFIA 670

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTYE 273
           S G  +L ++   G VP    +  LI  F +        EL   M  V  +   DN  Y 
Sbjct: 671 SLG--ILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYA 728

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I  LC + +  EA+R+++++  RG+VP+  ++  +I GL ++    +A ++ + + H+
Sbjct: 729 SLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 788

Query: 334 GLLPNEYTYNSMIHG 348
           G+    +  N   HG
Sbjct: 789 GV---NWQGNKSFHG 800


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M      PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM+ KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +   L  ++L+ GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML+ G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L + L    +F+ +   M  ++ +G++P   +    +   C+ G  + A   
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
              +K  GV   + T+N  +    + +R    + L  D+         +    LI  F N
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKV    +LL ++L  GL P +  FN LI     + NF    ++ + M A+   P   +
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++GLCK+ +   A   +  +K  G     + YT +I GLCK G+L +A  +  EM 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P+  TY+++I+G+C++   + AK +   +   G     + Y+TLI   C  G   
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           EA  ++E M  +G  RD  T+N L+   CK GK+ 
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA 525



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 162/356 (45%), Gaps = 13/356 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPN 139
           +  VL++ +    + S +G SP+ V+ N L D  +    FK A+     +++ G +P+  
Sbjct: 311 EGKVLIASQLLNEMLS-FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEV 369

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           S  + +  LC++   + A   + ++K  GV     T+   + G  K    D    L +++
Sbjct: 370 SYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEM 429

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            + G          LI  FC  G+     E++ ++   GL P    ++ LI   C     
Sbjct: 430 SKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCL 489

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                +   M+      D+FT+  ++  LCK+ K  EA      +   G +P+TV +  +
Sbjct: 490 KEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCL 549

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I+G    G    A  ++ EM   G  P  +TY S++ G C+  +L EA++  K +     
Sbjct: 550 INGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPA 609

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              TV YNTL+  +C  G   +A  LF EM Q+ I  D  TY +LI G C++GK V
Sbjct: 610 AVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTV 665



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 167/369 (45%), Gaps = 36/369 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDS--LVEARAFKVAMDFLDSTGF----------- 134
           L+++F +W+    G   D +   V   +  LV AR +  A   L                
Sbjct: 52  LALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGA 111

Query: 135 --------SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLGC 183
                   + NP+  ++ I+     G+I+++   F   + MG++G   S+ T N+ L   
Sbjct: 112 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIF---RLMGLYGFNPSVYTCNAILGSV 168

Query: 184 IKIDRTDLVW---------KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           +K      VW         K+  D+     LI   C +G   +   L++++ + G  P  
Sbjct: 169 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             +N ++  +C+K  F    ELL  M ++    D  TY  +I+ LC+S +  + Y +  D
Sbjct: 229 VTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRD 288

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +++R   P+ V Y T+I+G    G +  A ++  EM+  GL PN  T+N++I G+    N
Sbjct: 289 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 348

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            +EA ++   M  KG   + V+Y  L+ GLC +   D A   +  M + G+    ITY  
Sbjct: 349 FKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 408

Query: 415 LIQGYCKEG 423
           +I G CK G
Sbjct: 409 MIDGLCKNG 417



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 12/339 (3%)

Query: 92   FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCL 148
            +F+    + G +PD+V+ N + D        +   D L   G     PN  +  + +   
Sbjct: 705  YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 764

Query: 149  CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
             +   +  +F  +  +   G+     T +S +LG  + +  ++  K+    I  G     
Sbjct: 765  SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 824

Query: 205  -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 LI   C +G+++  ++L++ +   G+  +    + ++S       F     +LH 
Sbjct: 825  YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHE 884

Query: 260  MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
            M  +  +P++  Y  +INGLC+      A+ V  ++      P  V  + ++  L K G 
Sbjct: 885  MSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGK 944

Query: 320  LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              +A  +   M+   L+P   ++ +++H  C+  N+ EA  L   M + G     V+YN 
Sbjct: 945  ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNV 1004

Query: 380  LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            LI GLC  G    A+ L+EEM   G   +  TY  LI+G
Sbjct: 1005 LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 158/359 (44%), Gaps = 12/359 (3%)

Query: 80   LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
            L ++   +++I F +   +     P+ V      D + +A  +K  + F   +D+ G +P
Sbjct: 658  LCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTP 717

Query: 137  NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
            +  +    I      G IE+      ++       ++ T+N  L G  K       + LY
Sbjct: 718  DIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLY 777

Query: 197  HDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
              +I +G L         +   C    +  G ++L+  +  G+  +   FN LIS+ C  
Sbjct: 778  RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCAN 837

Query: 248  KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                   +L+  M +   + D  T + +++ L ++ +  E+  V +++ ++G  P++  Y
Sbjct: 838  GEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897

Query: 308  TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
              +I+GLC++G +  A  +  EMI   + P     ++M+    +    +EA  L + ML 
Sbjct: 898  IGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLK 957

Query: 368  KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                 T  ++ TL+   C +G   EA  L   M+  G+  D+++YN LI G C +G + 
Sbjct: 958  MKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMA 1016



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P  +T   ++  + KS + +  +    ++ +R   PD   +  +I+ LC  G    +  +
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 215

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M   G  P   TYN+++H YC+    + A  L   M  KG      TYN LI  LC 
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             R  + Y L  +M ++ I  + +TYNTLI G+  EGK++
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 136/338 (40%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P   +   L   L +    + A  FL S    P      +Y   +  +C+SG + +A
Sbjct: 573 GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKA 632

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
              F ++ +  +     T+ S + G  +  +T +      +    G +          + 
Sbjct: 633 VSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVD 692

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G+   G     Q+   G  P+    N +I  +       + ++LL  M  +N  P
Sbjct: 693 GMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGP 752

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++G  K +    ++ ++  +   G +PD +   +++ G+C+   L    K+ 
Sbjct: 753 NLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKIL 812

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              I +G+  + YT+N +I   C    +  A  L K M   G      T + +++ L  +
Sbjct: 813 KAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRN 872

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            R  E+  +  EM+++GI  +   Y  LI G C+ G I
Sbjct: 873 HRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDI 910


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 41/373 (10%)

Query: 62  LSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARA 121
           LS+  S     P+F     K       +++FF  +         ++S N+L  +L + + 
Sbjct: 53  LSERISLQHGLPMFIHNCKKGNITSTQALQFFDLMMR------SIISFNLLLGALAKIKH 106

Query: 122 FKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           +         +   G SPN  +L + I CLC    + E   A + +   G    + T+ S
Sbjct: 107 YSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTS 166

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
                                     LI+  C + ++SE   L  ++ + G  P    + 
Sbjct: 167 --------------------------LIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYG 200

Query: 239 KLISRFCEKKNFGRVSELLHTMV------ARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
            LI   C   N     +L   M+      A N  P+ F+Y  +I+ LCK  K  EA R+F
Sbjct: 201 TLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLF 260

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           N++ ++G  PD V ++ +I  LCK G + +A+K    M+ +G++P+ +T+ S+I G+C +
Sbjct: 261 NEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLV 320

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            +L+ AK L   M  KGY    ++Y  LI G C     +EA  L+ EM + G + D+ T+
Sbjct: 321 GDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTF 380

Query: 413 NTLIQGYCKEGKI 425
             L++G    GK+
Sbjct: 381 CVLLKGLFLAGKV 393



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/380 (25%), Positives = 166/380 (43%), Gaps = 53/380 (13%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  + N+L + L      R    AM  +   G+ P+  +    I+ LC    I EA
Sbjct: 121 GLSPNFFTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEA 180

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--------------- 202
              F +++++G + ++ T+ + + G  +    +L  KL+ +++                 
Sbjct: 181 TRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSY 240

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C  GK  E   L  ++++ G+ P+   F+ LI   C++       + L TM+ 
Sbjct: 241 NIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMML 300

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R   PD FT+  +I G C       A  +F  +  +GY PD + YT +I+G CK   + +
Sbjct: 301 RGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEE 360

Query: 323 ARKMWFEMIHKGLLP-----------------------------------NEYTYNSMIH 347
           A K++ EM+  G  P                                   N Y  +  + 
Sbjct: 361 AMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFLD 420

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G C+   L EA  L  E+          ++N LI GLC   + + A+ LFE+++Q+G+  
Sbjct: 421 GLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQP 480

Query: 408 DVITYNTLIQGYCKEGKIVN 427
           DV+TY  +I G+CK G++ N
Sbjct: 481 DVVTYCIMINGFCKNGQVDN 500



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 68/198 (34%), Positives = 104/198 (52%), Gaps = 8/198 (4%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           +FN L+    + K++ +V  L   M     +P+ FT   +IN LC   +  E       +
Sbjct: 93  SFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNFFTLNILINCLCNVNRVREGLSAMAGI 152

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
             RGY+PD V YT++I GLC    + +A +++  M   G  PN  TY ++I G CR  N+
Sbjct: 153 MRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIRMQKLGCWPNVVTYGTLIKGLCRTGNI 212

Query: 356 EEAKRLHKEMLDKGYGETTV-------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
             A +LH+EML+ G     +       +YN +I  LC  G+  EA  LF EM  +G+  D
Sbjct: 213 NLALKLHQEMLN-GTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPD 271

Query: 409 VITYNTLIQGYCKEGKIV 426
           V+T++ LI   CKEG ++
Sbjct: 272 VVTFSALIDTLCKEGMVI 289



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 152/344 (44%), Gaps = 19/344 (5%)

Query: 80  LKQQNNVLLSIRFFQWL---HSHYGFS--PDLVSCNVLFDSLVEARAFKVAMDFLDST-- 132
           L +  N+ L+++  Q +    S Y  +  P++ S N++ D L +   +K A    +    
Sbjct: 206 LCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDELCKIGKWKEAKRLFNEMVD 265

Query: 133 -GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P+  +    I  LC+ G++ EA      +   G+   + T+ S + G   +   D 
Sbjct: 266 QGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDS 325

Query: 192 VWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
             +L+  +   GY         LI  +C    V E  +L  ++L  G  P+   F  L+ 
Sbjct: 326 AKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLK 385

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV-INGLCKSRKRLEAYRVFNDLKERGYV 301
                   G   +L   +V  +  P N     V ++GLCK+    EA  +FN+LK     
Sbjct: 386 GLFLAGKVGDAKKLF-GVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMK 444

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
            D   +  +I GLCK   L  A +++ ++  +GL P+  TY  MI+G+C+   ++ A  L
Sbjct: 445 LDIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANIL 504

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
            + M + G     +TY+ L+ G   + + +E   L  +M QK +
Sbjct: 505 FQMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDV 548



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/293 (25%), Positives = 134/293 (45%), Gaps = 14/293 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ + L D+L +      A  FL++    G  P+  +    I+  C  G ++ A
Sbjct: 267 GVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSA 326

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F  +   G    + ++   + G  K    +   KLY++++  G          L++ 
Sbjct: 327 KELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKG 386

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAF-NKLISRFCEKKNFGRVSELLHTMVARNRAP 267
               GKV +  +L   V++   VP+N    +  +   C+        EL + + + N   
Sbjct: 387 LFLAGKVGDAKKLF-GVVKPHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKL 445

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  ++  +I+GLCK+RK   A+ +F  L + G  PD V Y  +I+G CK G + +A  ++
Sbjct: 446 DIESFNCLIDGLCKARKLETAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILF 505

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             M   G  PN  TY++++HG+ + + LEE  +L  +M+ K        Y  +
Sbjct: 506 QMMEENGCTPNLLTYSALLHGFYKNNKLEEVVKLLHKMIQKDVSLAASIYTIV 558


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 121/227 (53%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    LI  FC   +V    +L+ ++ E     +   +N +I  FC+         L 
Sbjct: 138 DVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNNALVLF 197

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M       D  TY  ++ GLC S +R +A R+  D+  R  VP+ + +T +I+   + 
Sbjct: 198 GRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALINAFVRE 257

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   +A+K + EMI + + P+ +TYNSMIHG C    ++EAK++   M+ KG     VTY
Sbjct: 258 GKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTY 317

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           NTLI G C   R DE   L  EM+Q+G+  D +T+NT+IQGY + G+
Sbjct: 318 NTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGR 364



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 165/335 (49%), Gaps = 15/335 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEE 156
           +G+ PD+V+ + L +   +      A+D +           + +Y   I   C++GL+  
Sbjct: 133 FGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCKTGLVNN 192

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTD--------LVWKLYHDLIESGYLIQ 207
           A   F +++  GV     T+NS + G C    R+D        ++  +  ++I    LI 
Sbjct: 193 ALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVITFTALIN 252

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           AF  +GK  E  +   +++   + P+   +N +I   C         ++L  MV +   P
Sbjct: 253 AFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKGCFP 312

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +ING CK+++  E  ++  ++ +RG V DTV + T+I G  + G    A++++
Sbjct: 313 DVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIF 372

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  PN  TY+ +++G C    +E+A  L + M          TYN +I G+C+ 
Sbjct: 373 SRM---GSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMI 429

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G  ++A+ LF  ++ KG+  DV+TY T+I G+C++
Sbjct: 430 GNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRK 464



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 158/329 (48%), Gaps = 15/329 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + L  ++ +++ + + +     ++  G   +  +  + I CLC       A   
Sbjct: 67  PSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVINCLCRCSRFVIALSV 126

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH-----DLIESGYLIQAFCN 211
             K+ + G    + T +S + G  + +R     DLV K+       D++    +I  FC 
Sbjct: 127 VGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCKLDVVIYNTIIDGFCK 186

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G V+    L  ++  DG+  +   +N L++  C        + L+  MV R+  P+  T
Sbjct: 187 TGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIVPNVIT 246

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +IN   +  K LEA + + ++  R   PD   Y ++IHGLC  G + +A+++   M+
Sbjct: 247 FTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMV 306

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  P+  TYN++I+G+C+   ++E  +L +EM  +G    TVT+NT+I G    GR D
Sbjct: 307 TKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTIIQGYFQAGRPD 366

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            A  +F  M  +   R   TY+ L+ G C
Sbjct: 367 AAQEIFSRMGSRPNIR---TYSILLYGLC 392



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 142/282 (50%), Gaps = 11/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           ++EA   F  + +     SI  ++  L    K    DLV  L+H         DL     
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE-KKNFGRVSELLHTMVAR 263
           +I   C   +      ++ ++++ G  P+    + LI+ FC+  + FG V +L+  M   
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAV-DLVSKMEEM 168

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
               D   Y  +I+G CK+     A  +F  ++  G   DTV Y +++ GLC  G   DA
Sbjct: 169 RCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDA 228

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  +M+ + ++PN  T+ ++I+ + R     EAK+ ++EM+ +       TYN++I G
Sbjct: 229 ARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHG 288

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC+HG+ DEA  + + M  KG F DV+TYNTLI G+CK  ++
Sbjct: 289 LCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRV 330



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 120/269 (44%), Gaps = 32/269 (11%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++++   L ++ V    F  A  F +        P+  +    I  LC  G ++EA   
Sbjct: 242 PNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQI 301

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
              +   G F  + T+N+                          LI  FC   +V EG +
Sbjct: 302 LDLMVTKGCFPDVVTYNT--------------------------LINGFCKTKRVDEGTK 335

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+R++ + GLV +   FN +I  + +        E+   M +R   P+  TY  ++ GLC
Sbjct: 336 LVREMSQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSR---PNIRTYSILLYGLC 392

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
            + +  +A  +F  +++     D   Y  VIHG+C +G + DA  ++  +  KGL P+  
Sbjct: 393 YNWRVEKALVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVV 452

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           TY +MI G+CR    ++A  L+++M + G
Sbjct: 453 TYTTMISGFCRKRLWDKADFLYRKMQEDG 481



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 84/176 (47%)

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           N     +L   M+     P    + ++++ + KS+       +F++++  G   D   Y 
Sbjct: 49  NLDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYN 108

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            VI+ LC+      A  +  +M+  G  P+  T +S+I+G+C+ + +  A  L  +M + 
Sbjct: 109 IVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEM 168

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                 V YNT+I G C  G  + A  LF  M + G+  D +TYN+L+ G C  G+
Sbjct: 169 RCKLDVVIYNTIIDGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGR 224



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/141 (28%), Positives = 67/141 (47%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA  +F ++ +   +P  V ++ ++  + K         ++  M   G+  + YTYN +I
Sbjct: 52  EAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNIVI 111

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           +  CR      A  +  +M+  GY    VT ++LI G C   R   A  L  +M +    
Sbjct: 112 NCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMRCK 171

Query: 407 RDVITYNTLIQGYCKEGKIVN 427
            DV+ YNT+I G+CK G + N
Sbjct: 172 LDVVIYNTIIDGFCKTGLVNN 192



 Score = 45.8 bits (107), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 9/144 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S  G   D V+ N +     +A     A +     G  PN  +  + +  LC +  +E+A
Sbjct: 341 SQRGLVVDTVTFNTIIQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKA 400

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQA 208
              F  +++  +   I T+N  + G   I   +  W L+          D++    +I  
Sbjct: 401 LVLFESMQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISG 460

Query: 209 FCNDGKVSEGYELLRQVLEDGLVP 232
           FC      +   L R++ EDGL+P
Sbjct: 461 FCRKRLWDKADFLYRKMQEDGLLP 484


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 167/390 (42%), Gaps = 67/390 (17%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P ++    +  SLV+ + +   +     L+  G  PN  SL + I C C  G +  AF 
Sbjct: 68  APSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHLGQMRFAFS 127

Query: 160 AFSKLKEMGVFGSIKT-----------------------------------WNSALLGCI 184
            F+K+ +MG   +  T                                   + + + G  
Sbjct: 128 IFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSYGTLINGLC 187

Query: 185 KIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           KI  T    ++           D++    +I   C D  V++ YEL  +++   + P   
Sbjct: 188 KIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKDKLVNDAYELYSEMITKRISPTVV 247

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
             N LI  +C    F     LL  MV +N  PD +T+  +++ LCK  K  EA      +
Sbjct: 248 TLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAKSGIAVM 307

Query: 296 KERGYVPDTV--------------------MYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
            + G +PD V                    +Y+ VI+G CK+  +  A  +++EM  + +
Sbjct: 308 MKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCKIKMVDKALSLFYEMRCRRI 367

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P+  TYNS+I G C+   +  A  L  EM D G     +TYN+LI  LC +   D+A  
Sbjct: 368 APDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIA 427

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L +++  +GI  D+ TYN LI G CK+G++
Sbjct: 428 LVKKIKDQGIQLDMYTYNILIDGLCKQGRL 457



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/362 (25%), Positives = 170/362 (46%), Gaps = 37/362 (10%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---I 145
           + LH H      GF  + VS   L + L +    + A+  L           + +Y   I
Sbjct: 159 EALHFHDHVLALGFHFNQVSYGTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTII 218

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CI--------KIDRTDLVWKLY 196
             LC+  L+ +A+  +S++    +  ++ T NS + G CI         + R  ++  + 
Sbjct: 219 DGLCKDKLVNDAYELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNIN 278

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL---------------- 240
            D+     L+ A C +GK+ E    +  ++++G++P+   ++ L                
Sbjct: 279 PDVYTFNILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHV 338

Query: 241 ----ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
               I+ FC+ K   +   L + M  R  APD  TY  +I+GLCKS +   A+ + ++++
Sbjct: 339 YSIVINGFCKIKMVDKALSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMR 398

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           + G   D + Y ++I  LCK   +  A  +  ++  +G+  + YTYN +I G C+   L+
Sbjct: 399 DSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLK 458

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +A+ + +++L KGY  T  TY  +I GLCL G  +EA  L  +M   G   D +T  T+I
Sbjct: 459 DAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETII 518

Query: 417 QG 418
           + 
Sbjct: 519 RA 520



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 136/308 (44%), Gaps = 9/308 (2%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SP +V+ N L         FK A   L        +P+  +  + +  LC+ G I+EA 
Sbjct: 242 ISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDALCKEGKIKEAK 301

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
              + + + GV   + T++S + G   ++  +    +Y        +I  FC    V + 
Sbjct: 302 SGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVY------SIVINGFCKIKMVDKA 355

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             L  ++    + P+   +N LI   C+        EL+  M    +  D  TY  +I+ 
Sbjct: 356 LSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADIITYNSLIDA 415

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           LCK+    +A  +   +K++G   D   Y  +I GLCK G L DA+ ++ +++ KG    
Sbjct: 416 LCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLT 475

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
            +TY  MI+G C    L EA+ L  +M D G     VT  T+I  L  + + + A  L  
Sbjct: 476 VWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDKNERAEKLLR 535

Query: 399 EMAQKGIF 406
           EM  +G+ 
Sbjct: 536 EMIARGLL 543



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 88/170 (51%), Gaps = 1/170 (0%)

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           H M+  N AP    + ++++ L K +       +F  L+  G  P+ V  + +I+  C +
Sbjct: 60  HRMLLLNPAPSVIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYCHL 119

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G +  A  ++ +++  G  PN  T  +++ G+C    ++EA   H  +L  G+    V+Y
Sbjct: 120 GQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQVSY 179

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            TLI GLC  G T  A  +  ++  K +  DV+ Y+T+I G CK+ K+VN
Sbjct: 180 GTLINGLCKIGETRAALQMLRQIEGKLVSTDVVMYSTIIDGLCKD-KLVN 228


>gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera]
          Length = 821

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 139/301 (46%), Gaps = 9/301 (2%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN       I  L E G I EA   F  + +  V   I  +N  + G  K+       + 
Sbjct: 470 PNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRS 529

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           Y  +IE G          LI  FC  GK++E  +LL  +   GLVP +  +  L++ +CE
Sbjct: 530 YKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCE 589

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           + +   + ++LH M A+   P   TY  V+ GLCK  +  E+ ++   +  RG  PD + 
Sbjct: 590 EGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQIT 649

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y TVI   CK   L  A ++  +M+   L P+  TYN +I+G C   NL++A RL   + 
Sbjct: 650 YNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQ 709

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           D+    T V Y T+I   C  G    A   F +M ++G    +  Y+ +I   CK   I 
Sbjct: 710 DQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLIT 769

Query: 427 N 427
           +
Sbjct: 770 D 770



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 172/367 (46%), Gaps = 41/367 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +PDLV+  +L     +      +FK+    L S G   +  +  + +  LC+SG I+E
Sbjct: 370 GLNPDLVTYTILICGHCQMGNIEESFKLKEKML-SQGLKLSIVTYTVLLSSLCKSGRIDE 428

Query: 157 AFCAFSKLKEMGVFGSIKTWN--------------------------SALL------GCI 184
           A     +++ +G+   + T++                          SA++      G I
Sbjct: 429 AVILLHEMEVIGLKPDLLTYSRGAVEEAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAI 488

Query: 185 KIDRT--DLVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
              +   D V K  +  ++I    +I  +   G + E     +Q++E G+ P    FN L
Sbjct: 489 SEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSL 548

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I  FC+K       +LL T+      P + TY  ++NG C+       + + ++++ +  
Sbjct: 549 IYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAI 608

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P  + YT V+ GLCK G L ++ ++   M  +GL P++ TYN++I  +C+  +L++A +
Sbjct: 609 KPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQ 668

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           LH +ML      + VTYN LI GLC++G   +A  L   +  + I    + Y T+I+ +C
Sbjct: 669 LHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHC 728

Query: 421 KEGKIVN 427
            +G + N
Sbjct: 729 AKGDVQN 735



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 138/270 (51%), Gaps = 12/270 (4%)

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
           ++ +A    +K+K + +  SI T+NS L     +  TD++W +Y+++  SG         
Sbjct: 183 MVHDALFVLAKMKVLNLQVSIATYNSLLY---NLRHTDIMWDVYNEIKASGVPQNEYTNP 239

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C   ++ +    LR+   +   P   +FN L+S FC+  +          M+  
Sbjct: 240 ILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKY 299

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD ++Y  +++GLC +    EA    ND++  G  PD V Y  + +G   +G +  A
Sbjct: 300 GLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGA 359

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K+   M+  GL P+  TY  +I G+C++ N+EE+ +L ++ML +G   + VTY  L++ 
Sbjct: 360 WKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSS 419

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           LC  GR DEA  L  EM   G+  D++TY+
Sbjct: 420 LCKSGRIDEAVILLHEMEVIGLKPDLLTYS 449



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 139/317 (43%), Gaps = 12/317 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCA 160
           P+   C+ +   L E  A   A  + DS   S     + LY   I    + G I EA  +
Sbjct: 470 PNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVRS 529

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL-----YHDLIESGY----LIQAFCN 211
           + ++ E G+  +I T+NS + G  K  +     KL      H L+ +      L+  +C 
Sbjct: 530 YKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYCE 589

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G +   +++L ++    + P    +  ++   C++       +LL  M AR   PD  T
Sbjct: 590 EGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQIT 649

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI   CK+    +A+++ N + +    P  V Y  +I+GLC  G L DA ++   + 
Sbjct: 650 YNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRLLVTLQ 709

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + +   +  Y ++I  +C   +++ A     +M+++G+  +   Y+ +I  LC      
Sbjct: 710 DQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLIT 769

Query: 392 EAYHLFEEMAQKGIFRD 408
           +A   F  M   GI  D
Sbjct: 770 DAKFFFCMMLTHGIPPD 786



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/250 (20%), Positives = 93/250 (37%), Gaps = 12/250 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G  P  V+   L +   E        D L   ++    P   +  + ++ LC+ G + E
Sbjct: 571 HGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHE 630

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           +      +   G+F    T+N+ +    K       ++L++ +++            LI 
Sbjct: 631 SVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLIN 690

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + +   LL  + +  +     A+  +I   C K +        H MV R    
Sbjct: 691 GLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEV 750

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
               Y  VIN LCK     +A   F  +   G  PD  +   +++   + G      +++
Sbjct: 751 SIRDYSAVINRLCKRNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIF 810

Query: 328 FEMIHKGLLP 337
             MI  GLLP
Sbjct: 811 AMMIKCGLLP 820


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 153/329 (46%), Gaps = 11/329 (3%)

Query: 106 LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           LV  N   D L EA  F+V           PN  +  + I  LCE+G +EEAF    ++ 
Sbjct: 235 LVLANCRRDDLGEA--FRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 292

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVS 216
           E G   S +T+   +     I  TD   K+  ++              LI   C +GK+ 
Sbjct: 293 EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIE 352

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   + R++L+ GL P    FN LI+ +C++       +LL  M   N  P+  TY E++
Sbjct: 353 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 412

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            GLC+  K  +A+ +   + + G +PD V Y  ++ G CK G L  A  ++  M   GL 
Sbjct: 413 EGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE 472

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+ +T+ ++I G C++  LE+A  +   M+ KG     VT+  LI G C  G+  +   L
Sbjct: 473 PDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFL 532

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           FE M +        T+N  +    K+ K+
Sbjct: 533 FENMVENRCLTTAHTFNCFLDALGKDYKL 561



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P   +  VL  +  +      AM  LD   +    PN ++  + I  LC  G IEEA
Sbjct: 295 GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 354

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
              F K+ + G+   I T+N+ + G  K       ++L   ++E G           L++
Sbjct: 355 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL-SVMEKGNCKPNIRTYNELME 413

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   K  + + LLR+V+++GL+P+   +N L+  FC++        + ++M +    P
Sbjct: 414 GLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEP 473

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FT+  +I+GLCK  +  +A  +   + ++G   D V +T +I G CK+G   D   ++
Sbjct: 474 DGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLF 533

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+    L   +T+N  +    +   L EA  +  +M+  G   + VT+  LI G C  
Sbjct: 534 ENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRA 593

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T  +  + E M Q G   +V TY  +I G C  G++
Sbjct: 594 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRV 631



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 165/382 (43%), Gaps = 23/382 (6%)

Query: 54  KPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLF 113
           KP WE        + +    L  +    Q NNV L +RFF+W+     +  DL     L 
Sbjct: 51  KPNWEHDKTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLL 110

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQ-CLCESGLIEEAFCAFSKLKEMGVFGS 172
             LV    F VA              ++ L IQ C      + +   A   + E+G   S
Sbjct: 111 GVLVSRDLFGVAQ------------KAVVLLIQECEDSENGVVKLMGALDGMTELGFRLS 158

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
              +++ L+   K++   + + +Y  ++  G+         ++ A C +G V        
Sbjct: 159 YPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCC 218

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA-RNRAPDNFTYEEVINGLCKS 282
           +VL  G   +      L+   C + + G    +   M    N  P++ TY  +I+GLC++
Sbjct: 219 KVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEA 278

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            +  EA+++  ++ E+G  P T  YT +I   C +G    A KM  EM  K  +PN +TY
Sbjct: 279 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 338

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             +I   CR   +EEA  + ++ML  G     +T+N LI G C  G    A+ L   M +
Sbjct: 339 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 398

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
                ++ TYN L++G C+  K
Sbjct: 399 GNCKPNIRTYNELMEGLCRVSK 420



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 134/331 (40%), Gaps = 44/331 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P   +    I   C+ G +  AF   S +++     +I+T+N  + G  ++ ++   
Sbjct: 365 GLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKA 424

Query: 193 WKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L   ++++G L         +  FC +G+++  + +   +   GL P+   F  LI  
Sbjct: 425 FLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDG 484

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----- 298
            C+     + + +L +MV +  + D  T+  +I+G CK  K  +   +F ++ E      
Sbjct: 485 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 544

Query: 299 ------------------------------GYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                                         G VP  V +T +I G C+ G    + KM  
Sbjct: 545 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 604

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  PN YTY  +I+G C    +EEA+ +   M   G      TY  L+      G
Sbjct: 605 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 664

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R D A+ +   M + G   +   Y+ L+ G+
Sbjct: 665 RLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 695



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/338 (22%), Positives = 146/338 (43%), Gaps = 27/338 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N+L D   +     +A +    ++S G  P+  +    I  LC+ G +E+A
Sbjct: 435 GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 494

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                 + + G+     T+ + + G  KI +   V  L+ +++E+  L         + A
Sbjct: 495 NGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDA 554

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              D K++E   +L ++++ GLVP       LI   C         ++L  M     +P+
Sbjct: 555 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 614

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +INGLC + +  EA  +   +   G  P+   Y  ++    K G L  A ++  
Sbjct: 615 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 674

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  G  PN + Y++++ G+               + +   G   ++    +    L  
Sbjct: 675 TMVKNGCQPNSHIYSALLSGFV--------------LSNTAIGARALSSTGDLDARSLSS 720

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             ++   L  E+ + G+  + + YN L+ G CKEG+I+
Sbjct: 721 EENDNNCLSNEIKKCGVPTEDL-YNFLVVGLCKEGRII 757



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/336 (21%), Positives = 138/336 (41%), Gaps = 48/336 (14%)

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           H   G + D+     LF+++VE R    A  F               ++  L +   + E
Sbjct: 520 HCKIGKAKDVC---FLFENMVENRCLTTAHTF-------------NCFLDALGKDYKLNE 563

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A     K+ + G+  S+ T    + G  +   T L  K+   + ++G          +I 
Sbjct: 564 ANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 623

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             CN+G+V E   +L  +   G+ P +  +  L+    +     R  +++ TMV     P
Sbjct: 624 GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQP 683

Query: 268 DNFTYEEVINGLCKSRKRLEAYR---------------------VFNDLKERGYVPDTVM 306
           ++  Y  +++G   S   + A                       + N++K+ G VP   +
Sbjct: 684 NSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCG-VPTEDL 742

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  ++ GLCK G + +A ++  +M+  GL P++   +S+I  YC+    +      K +L
Sbjct: 743 YNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYCKTCKYDNCLEFMKLVL 801

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           D  +  +  +Y  +I GL   GR  EA  L  ++ +
Sbjct: 802 DNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 837



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
             + + E G+      Y+T++  L K+     A  ++  M+++G +     Y ++++  C
Sbjct: 146 ALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALC 205

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DV 409
           +   ++ A+    ++L  G+G  T    +L+   C      EA+ +FE+M+++   R + 
Sbjct: 206 KNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNS 265

Query: 410 ITYNTLIQGYCKEGKI 425
           +TY+ LI G C+ G++
Sbjct: 266 VTYSILIHGLCEAGRL 281


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 160/369 (43%), Gaps = 45/369 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           GFS D VS   L +   EA     A++        P+  +    ++ LC++G  EE  C 
Sbjct: 194 GFSQDAVSYAALIEGFCEAGRIDEALELFREMT-QPDMYTHAALVKGLCDAGRGEEGLCM 252

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------------- 205
             K+KE+G   + + + + +    +  + +   K+ +++ +SG +               
Sbjct: 253 LQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCR 312

Query: 206 -----------------------------IQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                                        +Q FCN GKV +   LL Q+ E G+ P+   
Sbjct: 313 EGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVT 372

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N LI   C   + G    LL  M     A D +TY  +I+ LCK+ K  EA  +F+ L+
Sbjct: 373 YNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLE 432

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            RG  P++V + TVI+GLCK G    A      MI  G  P+ YTY+  I   C+    +
Sbjct: 433 YRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQ 492

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           E      EML K    +TV Y  +I  L        A  ++ +M  +G   DV+TY T +
Sbjct: 493 EGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSV 552

Query: 417 QGYCKEGKI 425
           + YC EG++
Sbjct: 553 RAYCNEGRL 561



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/366 (26%), Positives = 165/366 (45%), Gaps = 13/366 (3%)

Query: 70  FNDPLFFREFLKQQNNVLLS---IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           F+ P  FR  L   +   L+   +R F  ++ H   +P   + N L  +L      + A 
Sbjct: 92  FDRP--FRSLLTHFSRYALTPLMLRLFAHMYRHAPPAPTGATYNALIRALCRRADLRHAQ 149

Query: 127 DFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
            +L     +G+ P+  +    I   C +  +E A   F K+   G      ++ + + G 
Sbjct: 150 RYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGFSQDAVSYAALIEGF 209

Query: 184 IKIDRTDLVWKLYH-----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
            +  R D   +L+      D+     L++  C+ G+  EG  +L+++ E G  P   A+ 
Sbjct: 210 CEAGRIDEALELFREMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYA 269

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            L+  +C ++      ++L+ M      P   T   V+N  C+  +   A RVF  ++ +
Sbjct: 270 ALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFK 329

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  P+   Y  ++ G C  G +  A  +  +M   G+ P+  TYN +I G C   ++  A
Sbjct: 330 GCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSA 389

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            RL + M   G      TYN LI  LC  G+ DEA  LF+ +  +GI  + +T+NT+I G
Sbjct: 390 FRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVING 449

Query: 419 YCKEGK 424
            CK GK
Sbjct: 450 LCKAGK 455



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 137/303 (45%), Gaps = 19/303 (6%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P   +    I+ LC    +  A    S +   G      T+NS +LG  +  + ++   
Sbjct: 126 APTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHD 185

Query: 195 LY---------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           L+          D +    LI+ FC  G++ E  EL R++ +    P+      L+   C
Sbjct: 186 LFCKMPFRGFSQDAVSYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLC 241

Query: 246 EKKNFGRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
           +    GR  E   +L  M      P    Y  +++  C+ +K  EA ++ N++ + G +P
Sbjct: 242 DA---GRGEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMP 298

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
             V  T V++  C+ G +  A +++  M  KG  PN +TYN+++ G+C    + +A  L 
Sbjct: 299 CVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALL 358

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            +M + G     VTYN LI G C+ G    A+ L   M   G+  D  TYN LI   CK 
Sbjct: 359 DQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKT 418

Query: 423 GKI 425
           GK+
Sbjct: 419 GKV 421



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 139/312 (44%), Gaps = 12/312 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+C ++ ++         A+   +S    G  PN  +    +Q  C +G + +A
Sbjct: 295 GLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKA 354

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CI--------KIDRTDLVWKLYHDLIESGYLIQA 208
                +++E GV   + T+N  + G CI        ++ R      L  D      LI A
Sbjct: 355 MALLDQMRECGVEPDVVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDA 414

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GKV E   L   +   G+ P +  FN +I+  C+   F      L  M++   APD
Sbjct: 415 LCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPD 474

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY   I  LCK++   E     +++ ++   P TV YT VI+ L      G A ++W 
Sbjct: 475 TYTYSPFIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWG 534

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ +G  P+  TY + +  YC    L+EA+ +  EM         + YNTLI G    G
Sbjct: 535 QMVSQGCSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIG 594

Query: 389 RTDEAYHLFEEM 400
           +TD A  + + M
Sbjct: 595 QTDRAVTILKHM 606



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 149/351 (42%), Gaps = 28/351 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N + + L +A  F VA  FL+   S G++P+  +   +I+ LC++   +E 
Sbjct: 435 GIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEG 494

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ +  V  S   +   +          L  +++  ++  G           ++A
Sbjct: 495 LFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSVRA 554

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +CN+G++ E   ++ ++ +   + +  A+N LI          R   +L  M      P+
Sbjct: 555 YCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAVTILKHMTGVASMPN 614

Query: 269 NFTY-------------EEVINGLCKSRKRLEAYRVFN--DLKERGYVPDTV-MYTTVIH 312
           +FT+             E V        K +E   VF   +L ++  VP +   Y +++ 
Sbjct: 615 HFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELFELMKKNSVPSSARTYLSILE 674

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G  +   L +   +   M  + L  NE  YN++++ +C++    +A  L   M+  G+  
Sbjct: 675 GFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLCSMIGHGFLP 734

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             + Y  L++GL   G+ D A  +F     K    D I +  +I G+ ++G
Sbjct: 735 NLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIIDGFIRKG 785



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%)

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           H    P   TYN++I   CR  +L  A+R    M+  G+     T+N+LI G C   + +
Sbjct: 122 HAPPAPTGATYNALIRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLE 181

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A+ LF +M  +G  +D ++Y  LI+G+C+ G+I
Sbjct: 182 VAHDLFCKMPFRGFSQDAVSYAALIEGFCEAGRI 215


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 168/345 (48%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++R F+ +       PD+V+ N L  SL +    K A D  D+    G +P+  S  + +
Sbjct: 310 AVRVFKEMRRQ-SILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIML 368

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWKLYHD---- 198
                 G + +    F  +   G+   I T+N    A   C  +D+  +++    D    
Sbjct: 369 NGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVK 428

Query: 199 --LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
             ++    +I A C  GK+ +  E   Q+++ G+VP+  A++ LI  FC   +  +  EL
Sbjct: 429 PHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKEL 488

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  ++      D   +  +IN LCK  + ++A  +F+     G  PD V+Y  ++ G C 
Sbjct: 489 ISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCL 548

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A +++  M+  G+ PN   Y ++++GYC+I  ++E   L +EML KG   +T+ 
Sbjct: 549 VGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTIL 608

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN +I GL   GRT  A   F EM + GI  +  TY+ +++G  K
Sbjct: 609 YNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFK 653



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 123 CTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVP 182

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           +  ++N L+   C +   G+  +LL  M       +PD   Y  VI+G  K     +A  
Sbjct: 183 DVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACD 242

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y++V+H LCK   +  A     +M++KG+LP+ +TYN++I+GY 
Sbjct: 243 LFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYS 302

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM  +      V  NTL+  LC +G+  EA  +F+ MA KG   DV 
Sbjct: 303 STGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVF 362

Query: 411 TYNTLIQGYCKEGKIVN 427
           +Y  ++ GY  +G +V+
Sbjct: 363 SYTIMLNGYATKGCLVD 379



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/374 (27%), Positives = 163/374 (43%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----------------------DSTG----- 133
           G  PDLV+ + +  +L +ARA   A  FL                       STG     
Sbjct: 251 GIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEA 310

Query: 134 -----------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG----VFGSIKTWNS 178
                        P+  +L   +  LC+ G I+EA   F  +   G    VF      N 
Sbjct: 311 VRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNG 370

Query: 179 -ALLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
            A  GC+ +D TDL   +  D I         LI+A+ N G + +   +  ++ + G+ P
Sbjct: 371 YATKGCL-VDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +  +I+  C         E  + M+ +   PD + Y  +I G C     L+A  + 
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLKAKELI 489

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++   G   D V + ++I+ LCK+G + DA+ ++   ++ GL P+   YN ++ GYC +
Sbjct: 490 SEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLV 549

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             +E+A R+   M+  G     V Y TL+ G C  GR DE   LF EM QKGI    I Y
Sbjct: 550 GKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILY 609

Query: 413 NTLIQGYCKEGKIV 426
           N +I G  + G+ V
Sbjct: 610 NIIIDGLFEAGRTV 623



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 157/354 (44%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   D +  + L     EA+    A+D L       G  P+  S  +
Sbjct: 131 LALAFFGQLL-RTGLRVDAIIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNI 189

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC  G   +A      + E G   S  +  +N+ + G  K    +    L+ ++++
Sbjct: 190 LLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQ 249

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C    + +    LRQ++  G++P+N  +N LI  +     +  
Sbjct: 250 RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKE 309

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              +   M  ++  PD      ++  LCK  K  EA  VF+ +  +G  PD   YT +++
Sbjct: 310 AVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLN 369

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G    G L D   ++  M+  G+ P   T+N +I  Y     L++A  +  EM D G   
Sbjct: 370 GYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKP 429

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VTY T+IA LC  G+ D+A   F +M  +G+  D   Y+ LIQG+C  G ++
Sbjct: 430 HVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLL 483



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 157/372 (42%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+ S  ++ +            D  D     G +P   +  + I+     G++++A
Sbjct: 356 GQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKA 415

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+++++ GV   + T+ + +    +I + D   + ++ +I+ G          LIQ 
Sbjct: 416 MIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQG 475

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + +  EL+ +++ +G+  +   F  +I+  C+         +    V     PD
Sbjct: 476 FCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVGLHPD 535

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +++G C   K  +A RVF+ +   G  P+ V Y T+++G CK+G + +   ++ 
Sbjct: 536 AVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGRIDEGLSLFR 595

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY----------- 377
           EM+ KG+ P+   YN +I G         AK    EM + G      TY           
Sbjct: 596 EMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNR 655

Query: 378 ------------------------NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
                                   NT+IAG+    R +EA  LF  +++ G+    +TY+
Sbjct: 656 CFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRSGLVPCAVTYS 715

Query: 414 TLIQGYCKEGKI 425
            +I    KEG +
Sbjct: 716 IMITNLIKEGLV 727



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/341 (22%), Positives = 146/341 (42%), Gaps = 14/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           G  PD+ S N+L  SL        A D L       T  SP+  +    I    + G + 
Sbjct: 179 GCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVN 238

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------I 206
           +A   F ++ + G+   + T++S +    K    D        ++  G L         I
Sbjct: 239 KACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLI 298

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             + + G+  E   + +++    ++P+  A N L+   C+        ++  TM  + + 
Sbjct: 299 YGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQN 358

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD F+Y  ++NG       ++   +F+ +   G  P    +  +I      G L  A  +
Sbjct: 359 PDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 418

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM   G+ P+  TY ++I   CRI  +++A     +M+D+G       Y+ LI G C 
Sbjct: 419 FNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCT 478

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           HG   +A  L  E+   G+  D++ + ++I   CK G++++
Sbjct: 479 HGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMD 519



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 54/234 (23%), Positives = 103/234 (44%), Gaps = 9/234 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G + +A   F     +G+      +N  + G   + + +   +++  ++ +G 
Sbjct: 508 INNLCKLGRVMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGI 567

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  +C  G++ EG  L R++L+ G+ P    +N +I    E         
Sbjct: 568 EPNVVGYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKV 627

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             H M     A +  TY  V+ GL K+R   EA  +F +L+      D +   T+I G+ 
Sbjct: 628 KFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMF 687

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +   + +A+ ++  +   GL+P   TY+ MI    +   +EEA+ +   M + G
Sbjct: 688 QTRRVEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAG 741



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  YTY  ++    R    E A     ++L  G     +  + L+ G C   RTDEA 
Sbjct: 109 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKRTDEAL 168

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +YN L++  C +GK
Sbjct: 169 DILLHRTPELGCVPDVFSYNILLKSLCNQGK 199


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|297605515|ref|NP_001057291.2| Os06g0249500 [Oryza sativa Japonica Group]
 gi|255676892|dbj|BAF19205.2| Os06g0249500 [Oryza sativa Japonica Group]
          Length = 690

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 152/331 (45%), Gaps = 16/331 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST-----GFSPNPNSLELYIQCLCESGLIEEAF 158
           PD+V+ N + D L ++   + A+ F++       G  PN  +    I   C  G I  A+
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD-----------LIESGYLIQ 207
               K++  GV  +I T N+ + G  +  RT    + + +            +    L+ 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVG 326

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A  +   V    EL  + + +G  P+   +  +IS   +         +  +M       
Sbjct: 327 ALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKL 386

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I G C+ ++  EAY +  ++KE G  PD   Y T++ G CK G      ++ 
Sbjct: 387 DTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELL 446

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI  G  P+  T+ +++HGYC++  ++EA R+ + M + G     V YNTLI  LC  
Sbjct: 447 GKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKR 506

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           G  D A  LF+EM +K +  +V T+N L++G
Sbjct: 507 GDVDLAIELFDEMKEKSVPANVTTFNALLKG 537



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 168/379 (44%), Gaps = 27/379 (7%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           F FN  L     L +  +V    R +  +       PD+V+  +L + L +A     A+ 
Sbjct: 137 FAFNSIL---AALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALR 193

Query: 128 FLDSTG-----FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSA 179
            LD          P+  +L   +  LC+SG ++EA  AF + +   V G   +  T+N  
Sbjct: 194 VLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL-AFVEQRMSSVHGCPPNTVTYNCL 252

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    ++    + ++L   +   G          ++   C  G+     E  R+  +  +
Sbjct: 253 IDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--KRTV 310

Query: 231 VPEN----TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
            PE       ++ L+       N G   EL H  ++   +PD   Y  +I+GL ++ +  
Sbjct: 311 WPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLE 370

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  + + +KE G+  DT  Y  +I G C+   L +A ++  EM   G+ P+  TYN+++
Sbjct: 371 DACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLL 430

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G C+  +      L  +M+D G   + +T+ TL+ G C  G+ DEA  +   M + GI 
Sbjct: 431 SGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIH 490

Query: 407 RDVITYNTLIQGYCKEGKI 425
            + + YNTLI   CK G +
Sbjct: 491 PNNVIYNTLIDFLCKRGDV 509



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 127/278 (45%), Gaps = 29/278 (10%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           V+ + L  +L+      +AM+      S G SP+       I  L ++G +E+A    S 
Sbjct: 319 VTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLR 223
           +KE G     K +N                           LI  FC   ++ E YELL+
Sbjct: 379 MKEAGFKLDTKAYN--------------------------ILIAGFCRKKRLHEAYELLQ 412

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++ E G+ P+   +N L+S  C+  +F  V ELL  M+     P   T+  +++G CK  
Sbjct: 413 EMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVG 472

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K  EA R+   + E G  P+ V+Y T+I  LCK G +  A +++ EM  K +  N  T+N
Sbjct: 473 KIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFN 532

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +++ G    +  E+A  L  +M ++      VT + L+
Sbjct: 533 ALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLM 570


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 47/370 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ N + D  V+    +      D     G  PN  +  + +  LC +G ++E 
Sbjct: 46  GVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDET 105

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF-------- 209
                ++    +F    T++    G  +   +  +  L+ + ++ G ++ A+        
Sbjct: 106 RVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNG 165

Query: 210 -CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGKV++  ++L  ++  GLVP    +N LI+ +C+ ++      +   M +R+  PD
Sbjct: 166 LCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPD 225

Query: 269 NFTYEEVINGLCK----------------------------------SRKRLE-AYRVFN 293
           + TY  +INGLCK                                  +  +LE  + V +
Sbjct: 226 HITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLS 285

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D++++G   D + + +V+   CK G + +A  +  +MI+K + PN   YNS+I  Y    
Sbjct: 286 DMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG 345

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           + E+A  L ++M + G   + VTYN L+ GLC   + DEA  L   +  +G+  DV++YN
Sbjct: 346 DTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYN 405

Query: 414 TLIQGYCKEG 423
           T+I   C +G
Sbjct: 406 TIISACCNKG 415



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 145/325 (44%), Gaps = 61/325 (18%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  S  + I  L  SG   +A   F ++ +MGV  +  T+N+ + G +K          
Sbjct: 14  PDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVK---------- 63

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                            G +  G+ L  Q+L DG  P    +N L+S  C          
Sbjct: 64  ----------------GGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRV 107

Query: 256 LLHTMVARNRAPDNFTY-----------------------------------EEVINGLC 280
           L+  M + +  PD FTY                                     ++NGLC
Sbjct: 108 LMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLC 167

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  K  +A +V   L   G VP TV+Y T+I+G C++  L  A  ++ +M  + + P+  
Sbjct: 168 KDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHI 227

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYN++I+G C+++ + +A+ L  EM   G   +  T+NTLI      G+ ++ + +  +M
Sbjct: 228 TYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDM 287

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            QKGI  DVI++ ++++ +CK GKI
Sbjct: 288 QQKGIKSDVISFGSVVKAFCKNGKI 312



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 152/327 (46%), Gaps = 14/327 (4%)

Query: 108 SCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +C++L + L +    A+A +V ++ L  TG  P        I   C+   +  AFC F +
Sbjct: 158 TCSILLNGLCKDGKVAKAEQV-LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 216

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           +K   +     T+N+ + G  K++       L  ++ +SG          LI A+   G+
Sbjct: 217 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 276

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + + + +L  + + G+  +  +F  ++  FC+         +L  M+ ++ AP+   Y  
Sbjct: 277 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 336

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+   +S    +A+ +   +K  G     V Y  ++ GLC+   + +A ++ + + ++G
Sbjct: 337 IIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 396

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P+  +YN++I   C   + ++A  L +EM   G   T  TY+TL++ L   GR  +  
Sbjct: 397 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 456

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+++M  K +      Y  ++  Y +
Sbjct: 457 CLYQQMLHKNVEPSSSIYGIMVDAYVR 483



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 145/323 (44%), Gaps = 14/323 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           H G  P  V  N L +   + R  + A    + + S    P+  +    I  LC+  ++ 
Sbjct: 184 HTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 243

Query: 156 EAFCAFSKLKEMGVFGSIKTWNS---------ALLGCIKIDRTDLVWK-LYHDLIESGYL 205
           +A     ++++ GV  S++T+N+          L  C  +  +D+  K +  D+I  G +
Sbjct: 244 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV-LSDMQQKGIKSDVISFGSV 302

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++AFC +GK+ E   +L  ++   + P    +N +I  + E  +  +   L+  M     
Sbjct: 303 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +    TY  ++ GLC+S +  EA  +   L+ +G  PD V Y T+I   C  G    A +
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 422

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM   G+ P   TY++++        + + + L+++ML K    ++  Y  ++    
Sbjct: 423 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 482

Query: 386 LHGRTDEAYHLFEEMAQKGIFRD 408
                 +   L +EM++KGI  D
Sbjct: 483 RCENDSKVASLKKEMSEKGIAFD 505


>gi|52076779|dbj|BAD45723.1| putative pentatricopeptide repeat-containing protein [Oryza sativa
           Japonica Group]
          Length = 629

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 152/331 (45%), Gaps = 16/331 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST-----GFSPNPNSLELYIQCLCESGLIEEAF 158
           PD+V+ N + D L ++   + A+ F++       G  PN  +    I   C  G I  A+
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD-----------LIESGYLIQ 207
               K++  GV  +I T N+ + G  +  RT    + + +            +    L+ 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVG 326

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A  +   V    EL  + + +G  P+   +  +IS   +         +  +M       
Sbjct: 327 ALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKL 386

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I G C+ ++  EAY +  ++KE G  PD   Y T++ G CK G      ++ 
Sbjct: 387 DTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELL 446

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI  G  P+  T+ +++HGYC++  ++EA R+ + M + G     V YNTLI  LC  
Sbjct: 447 GKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKR 506

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           G  D A  LF+EM +K +  +V T+N L++G
Sbjct: 507 GDVDLAIELFDEMKEKSVPANVTTFNALLKG 537



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 168/379 (44%), Gaps = 27/379 (7%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           F FN  L     L +  +V    R +  +       PD+V+  +L + L +A     A+ 
Sbjct: 137 FAFNSIL---AALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALR 193

Query: 128 FLDSTG-----FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSA 179
            LD          P+  +L   +  LC+SG ++EA  AF + +   V G   +  T+N  
Sbjct: 194 VLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL-AFVEQRMSSVHGCPPNTVTYNCL 252

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    ++    + ++L   +   G          ++   C  G+     E  R+  +  +
Sbjct: 253 IDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--KRTV 310

Query: 231 VPEN----TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
            PE       ++ L+       N G   EL H  ++   +PD   Y  +I+GL ++ +  
Sbjct: 311 WPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLE 370

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  + + +KE G+  DT  Y  +I G C+   L +A ++  EM   G+ P+  TYN+++
Sbjct: 371 DACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLL 430

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G C+  +      L  +M+D G   + +T+ TL+ G C  G+ DEA  +   M + GI 
Sbjct: 431 SGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIH 490

Query: 407 RDVITYNTLIQGYCKEGKI 425
            + + YNTLI   CK G +
Sbjct: 491 PNNVIYNTLIDFLCKRGDV 509



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 137/308 (44%), Gaps = 32/308 (10%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           V+ + L  +L+      +AM+      S G SP+       I  L ++G +E+A    S 
Sbjct: 319 VTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLR 223
           +KE G     K +N                           LI  FC   ++ E YELL+
Sbjct: 379 MKEAGFKLDTKAYN--------------------------ILIAGFCRKKRLHEAYELLQ 412

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++ E G+ P+   +N L+S  C+  +F  V ELL  M+     P   T+  +++G CK  
Sbjct: 413 EMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVG 472

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K  EA R+   + E G  P+ V+Y T+I  LCK G +  A +++ EM  K +  N  T+N
Sbjct: 473 KIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFN 532

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF---EEM 400
           +++ G    +  E+A  L  +M ++      VT + L+  L + G TD         E  
Sbjct: 533 ALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHT 592

Query: 401 AQKGIFRD 408
           A K I  D
Sbjct: 593 ASKRIVSD 600


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/353 (27%), Positives = 164/353 (46%), Gaps = 32/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           GF PD  + + +   L  A   KV   FL        G +P+  +  + I   C++GLIE
Sbjct: 218 GFVPDTSTYSKVITFLCHAT--KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIE 275

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A   F +++ +G   ++ T+ + +   +K  +      ++H ++++G          L+
Sbjct: 276 QAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALV 335

Query: 207 QAFCNDGKVSEGYELLRQVL--------------ED--GLVPENTAFNKLISRFCEKKNF 250
              C  G +S+ +E+  +++              ED   L P    +  L+   C+    
Sbjct: 336 DGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 395

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               ELL  M++    P++  Y+ +I+G CK+ K   A  VF  + + GY+P    YT++
Sbjct: 396 DHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSL 455

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I  + K G L  A K+  +M+     PN  TY +MI G CRI   E+A +L   M +KG 
Sbjct: 456 IDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGC 515

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               VTY  LI GL   G+ D +  LF +M++KG   + +TY  LI   C  G
Sbjct: 516 SPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAG 568



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/331 (25%), Positives = 156/331 (47%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +AF++  + +   GF P+ ++    I  LC +  +E+AF  F ++K +GV   + T+   
Sbjct: 206 KAFQLIKEMM-RKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTIL 264

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K    +    L+ ++   G          LI A+    +V +  ++  ++++ G 
Sbjct: 265 IDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGC 324

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----------------APDNFTYEE 274
            P +  +  L+   C+  N  +  E+   ++  +                 AP+  TY  
Sbjct: 325 RPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGA 384

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLCK+ K   A+ + + +   G  P+ ++Y  +I G CK G +  A++++ +M   G
Sbjct: 385 LVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCG 444

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
            LP+ +TY S+I    +   L+ A ++  +ML        VTY  +I GLC  G +++A 
Sbjct: 445 YLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKAL 504

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M +KG   +V+TY  LI G  K GKI
Sbjct: 505 KLLSLMEEKGCSPNVVTYTALIDGLGKAGKI 535



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 147/335 (43%), Gaps = 16/335 (4%)

Query: 94  QWLHSH---YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQC 147
           QWL       G SP +V+   L  + ++A+    A D    +   G  PN  +    +  
Sbjct: 278 QWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDG 337

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           LC++G I +AF  ++KL      G+  + +S      + DR  L      +++  G L+ 
Sbjct: 338 LCKAGNISKAFEVYAKL-----IGTSDSADSDFYFPCE-DRHTLA----PNVVTYGALVD 387

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   KV   +ELL  +L  G  P +  ++ LI  FC+        E+   M      P
Sbjct: 388 GLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLP 447

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  +I+ + K  +   A +V + + +    P+ V YT +I GLC++G    A K+ 
Sbjct: 448 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 507

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  KG  PN  TY ++I G  +   ++ +  L  +M  KG     VTY  LI  LC  
Sbjct: 508 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 567

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           G  D+A  L  EM Q    + +  Y   IQG+ K 
Sbjct: 568 GLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKS 602



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 157/394 (39%), Gaps = 66/394 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S  GF  D  +      +L +   +  A+D ++   F  +       I  L E+   +EA
Sbjct: 2   SESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDEA 61

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                +++      ++ T+ + L G +K  +     ++ + ++  G          L+ +
Sbjct: 62  MSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHS 121

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK-------------------- 248
           +CN+   +  Y+LL ++   G  P    +N  I   C ++                    
Sbjct: 122 YCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLA 181

Query: 249 -----------NFGR----------VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
                      NF R            +L+  M+ +   PD  TY +VI  LC + K  +
Sbjct: 182 ANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEK 241

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+ +F ++K  G  PD   YT +I   CK G +  A+ ++ EM   G  P   TY ++IH
Sbjct: 242 AFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIH 301

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA------ 401
            Y +   + +A  +   M+D G     VTY  L+ GLC  G   +A+ ++ ++       
Sbjct: 302 AYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSA 361

Query: 402 ----------QKGIFRDVITYNTLIQGYCKEGKI 425
                     +  +  +V+TY  L+ G CK  K+
Sbjct: 362 DSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKV 395



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/365 (24%), Positives = 147/365 (40%), Gaps = 64/365 (17%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           F+      +  +P++V+   L D L +A     A + LD   S+G  PN    +  I   
Sbjct: 365 FYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGF 424

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C++G I+ A   F ++ + G   S+ T+ S                          LI  
Sbjct: 425 CKAGKIDSAQEVFLQMTKCGYLPSVHTYTS--------------------------LIDR 458

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              DG++    ++L Q+L+D   P    +  +I   C      +  +LL  M  +  +P+
Sbjct: 459 MFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPN 518

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GL K+ K   +  +F  +  +G  P+ V Y  +I+ LC  G L  AR +  
Sbjct: 519 VVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKARLLLG 578

Query: 329 EMIHK---------------------------------GLLPNEYTYNSMIHGYCRIDNL 355
           EM                                    G +P    Y  +I  + +   L
Sbjct: 579 EMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGMLIDCFSKAGRL 638

Query: 356 EEAKRLHKEMLDKGYGETTVT--YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           E A  LHKEM++      T    Y +LI  LCL  + +EA+ L+ EM ++G   ++  + 
Sbjct: 639 EIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFV 698

Query: 414 TLIQG 418
            LI+G
Sbjct: 699 CLIKG 703



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 62/255 (24%), Positives = 109/255 (42%), Gaps = 40/255 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   L D L +A    +++D    +   G SPN  +  + I  LC +GL+++A
Sbjct: 514 GCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAAGLLDKA 573

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--LIQAFCNDGKV 215
                ++K+                          W  Y      GY   IQ F      
Sbjct: 574 RLLLGEMKQT------------------------YWPKYL----QGYRCAIQGFSKSFIA 605

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--VARNRAPDNFTYE 273
           S G  +L ++   G VP    +  LI  F +        EL   M  V  +   DN  Y 
Sbjct: 606 SLG--ILEEMESYGTVPIAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYA 663

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I  LC + +  EA+R+++++  RG+VP+  ++  +I GL ++    +A ++ + + H+
Sbjct: 664 SLIQALCLASQVEEAFRLYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHE 723

Query: 334 GLLPNEYTYNSMIHG 348
           G+    +  N   HG
Sbjct: 724 GV---NWQGNKSFHG 735



 Score = 43.1 bits (100), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 32/163 (19%)

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKM------------------------WFE- 329
           + E G+  D        H LCK G   DA  M                        +F+ 
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADALDMIEREDFKLDTVLCTHMISGLMEASYFDE 60

Query: 330 ---MIHK----GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
               +H+      +PN  TY +++ G+ +   L   KR+   M+ +G       +N+L+ 
Sbjct: 61  AMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVH 120

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             C       AY L   M   G     + YN  I   C + K+
Sbjct: 121 SYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKL 163


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 170/370 (45%), Gaps = 47/370 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ ++ N + D  V+    +      D     G  PN  +  + +  LC +G ++E 
Sbjct: 224 GVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDET 283

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF-------- 209
                ++    +F    T++    G  +   +  +  L+ + ++ G ++ A+        
Sbjct: 284 RVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNG 343

Query: 210 -CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGKV++  ++L  ++  GLVP    +N LI+ +C+ ++      +   M +R+  PD
Sbjct: 344 LCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPD 403

Query: 269 NFTYEEVINGLCK----------------------------------SRKRLE-AYRVFN 293
           + TY  +INGLCK                                  +  +LE  + V +
Sbjct: 404 HITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLS 463

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D++++G   D + + +V+   CK G + +A  +  +MI+K + PN   YNS+I  Y    
Sbjct: 464 DMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG 523

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           + E+A  L ++M + G   + VTYN L+ GLC   + DEA  L   +  +G+  DV++YN
Sbjct: 524 DTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYN 583

Query: 414 TLIQGYCKEG 423
           T+I   C +G
Sbjct: 584 TIISACCNKG 593



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 165/371 (44%), Gaps = 49/371 (13%)

Query: 104 PDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L SCN+L +SL+        + A   L + G  P+  +    +Q    +G ++ A   
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 161 FSKL--KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             ++   E        ++N  + G  +  +     K++ ++++ G          +I   
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGH 239

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G +  G+ L  Q+L DG  P    +N L+S  C          L+  M + +  PD 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDG 299

Query: 270 FTY-----------------------------------EEVINGLCKSRKRLEAYRVFND 294
           FTY                                     ++NGLCK  K  +A +V   
Sbjct: 300 FTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQVLEM 359

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           L   G VP TV+Y T+I+G C++  L  A  ++ +M  + + P+  TYN++I+G C+++ 
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           + +A+ L  EM   G   +  T+NTLI      G+ ++ + +  +M QKGI  DVI++ +
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGS 479

Query: 415 LIQGYCKEGKI 425
           +++ +CK GKI
Sbjct: 480 VVKAFCKNGKI 490



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/327 (22%), Positives = 152/327 (46%), Gaps = 14/327 (4%)

Query: 108 SCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +C++L + L +    A+A +V ++ L  TG  P        I   C+   +  AFC F +
Sbjct: 336 TCSILLNGLCKDGKVAKAEQV-LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 394

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           +K   +     T+N+ + G  K++       L  ++ +SG          LI A+   G+
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + + + +L  + + G+  +  +F  ++  FC+         +L  M+ ++ AP+   Y  
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+   +S    +A+ +   +K  G     V Y  ++ GLC+   + +A ++ + + ++G
Sbjct: 515 IIDAYIESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P+  +YN++I   C   + ++A  L +EM   G   T  TY+TL++ L   GR  +  
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTLVSALASAGRVHDME 634

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+++M  K +      Y  ++  Y +
Sbjct: 635 CLYQQMLHKNVEPSSSIYGIMVDAYVR 661



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 145/323 (44%), Gaps = 14/323 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           H G  P  V  N L +   + R  + A    + + S    P+  +    I  LC+  ++ 
Sbjct: 362 HTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVT 421

Query: 156 EAFCAFSKLKEMGVFGSIKTWNS---------ALLGCIKIDRTDLVWK-LYHDLIESGYL 205
           +A     ++++ GV  S++T+N+          L  C  +  +D+  K +  D+I  G +
Sbjct: 422 KAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV-LSDMQQKGIKSDVISFGSV 480

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++AFC +GK+ E   +L  ++   + P    +N +I  + E  +  +   L+  M     
Sbjct: 481 VKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 540

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +    TY  ++ GLC+S +  EA  +   L+ +G  PD V Y T+I   C  G    A +
Sbjct: 541 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 600

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM   G+ P   TY++++        + + + L+++ML K    ++  Y  ++    
Sbjct: 601 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAYV 660

Query: 386 LHGRTDEAYHLFEEMAQKGIFRD 408
                 +   L +EM++KGI  D
Sbjct: 661 RCENDSKVASLKKEMSEKGIAFD 683


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  +++++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|125596712|gb|EAZ36492.1| hypothetical protein OsJ_20823 [Oryza sativa Japonica Group]
          Length = 604

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 152/331 (45%), Gaps = 16/331 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST-----GFSPNPNSLELYIQCLCESGLIEEAF 158
           PD+V+ N + D L ++   + A+ F++       G  PN  +    I   C  G I  A+
Sbjct: 207 PDVVTLNTVVDGLCKSGRVQEALAFVEQRMSSVHGCPPNTVTYNCLIDAFCRVGNISMAY 266

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD-----------LIESGYLIQ 207
               K++  GV  +I T N+ + G  +  RT    + + +            +    L+ 
Sbjct: 267 ELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFREKRTVWPEGKGNAVTYSTLVG 326

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A  +   V    EL  + + +G  P+   +  +IS   +         +  +M       
Sbjct: 327 ALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASSMKEAGFKL 386

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I G C+ ++  EAY +  ++KE G  PD   Y T++ G CK G      ++ 
Sbjct: 387 DTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELL 446

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +MI  G  P+  T+ +++HGYC++  ++EA R+ + M + G     V YNTLI  LC  
Sbjct: 447 GKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIHPNNVIYNTLIDFLCKR 506

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           G  D A  LF+EM +K +  +V T+N L++G
Sbjct: 507 GDVDLAIELFDEMKEKSVPANVTTFNALLKG 537



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 168/379 (44%), Gaps = 27/379 (7%)

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           F FN  L     L +  +V    R +  +       PD+V+  +L + L +A     A+ 
Sbjct: 137 FAFNSIL---AALARVRDVPGMARIYALMQGCASVRPDVVTYGILVNGLCKAGRVGDALR 193

Query: 128 FLDSTG-----FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSA 179
            LD          P+  +L   +  LC+SG ++EA  AF + +   V G   +  T+N  
Sbjct: 194 VLDGMSRQDLDIRPDVVTLNTVVDGLCKSGRVQEAL-AFVEQRMSSVHGCPPNTVTYNCL 252

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    ++    + ++L   +   G          ++   C  G+     E  R+  +  +
Sbjct: 253 IDAFCRVGNISMAYELVEKMENEGVPQNIVTLNTIVGGLCRAGRTGAALEFFRE--KRTV 310

Query: 231 VPEN----TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
            PE       ++ L+       N G   EL H  ++   +PD   Y  +I+GL ++ +  
Sbjct: 311 WPEGKGNAVTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLE 370

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  + + +KE G+  DT  Y  +I G C+   L +A ++  EM   G+ P+  TYN+++
Sbjct: 371 DACSMASSMKEAGFKLDTKAYNILIAGFCRKKRLHEAYELLQEMKEVGIRPDVCTYNTLL 430

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G C+  +      L  +M+D G   + +T+ TL+ G C  G+ DEA  +   M + GI 
Sbjct: 431 SGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVGKIDEALRILRSMDESGIH 490

Query: 407 RDVITYNTLIQGYCKEGKI 425
            + + YNTLI   CK G +
Sbjct: 491 PNNVIYNTLIDFLCKRGDV 509



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 137/308 (44%), Gaps = 32/308 (10%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           V+ + L  +L+      +AM+      S G SP+       I  L ++G +E+A    S 
Sbjct: 319 VTYSTLVGALLHTNNVGMAMELFHEKMSEGHSPDAIMYFTMISGLTQAGRLEDACSMASS 378

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLR 223
           +KE G     K +N                           LI  FC   ++ E YELL+
Sbjct: 379 MKEAGFKLDTKAYN--------------------------ILIAGFCRKKRLHEAYELLQ 412

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++ E G+ P+   +N L+S  C+  +F  V ELL  M+     P   T+  +++G CK  
Sbjct: 413 EMKEVGIRPDVCTYNTLLSGSCKAGDFAAVDELLGKMIDDGCQPSVITFGTLVHGYCKVG 472

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K  EA R+   + E G  P+ V+Y T+I  LCK G +  A +++ EM  K +  N  T+N
Sbjct: 473 KIDEALRILRSMDESGIHPNNVIYNTLIDFLCKRGDVDLAIELFDEMKEKSVPANVTTFN 532

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF---EEM 400
           +++ G    +  E+A  L  +M ++      VT + L+  L + G TD         E  
Sbjct: 533 ALLKGLRDKNMPEKAFELMDQMREERCFPDYVTVDVLMEWLPVIGETDRLKRFMQQGEHT 592

Query: 401 AQKGIFRD 408
           A K I  D
Sbjct: 593 ASKRIVSD 600


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L + L    +F+ +   M  ++ +G++P   +    +   C+ G  + A   
Sbjct: 231 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 290

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
              +K  GV   + T+N  +    + +R    + L  D+         +    LI  F N
Sbjct: 291 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 350

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKV    +LL ++L  GL P +  FN LI     + NF    ++ + M A+   P   +
Sbjct: 351 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 410

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++GLCK+ +   A   +  +K  G     + YT +I GLCK G+L +A  +  EM 
Sbjct: 411 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 470

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P+  TY+++I+G+C++   + AK +   +   G     + Y+TLI   C  G   
Sbjct: 471 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 530

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           EA  ++E M  +G  RD  T+N L+   CK GK+ 
Sbjct: 531 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA 565



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 162/357 (45%), Gaps = 13/357 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
            +  VL++ +    + S +G SP+ V+ N L D  +    FK A+     +++ G +P+ 
Sbjct: 350 NEGKVLIASQLLNEMLS-FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSE 408

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S  + +  LC++   + A   + ++K  GV     T+   + G  K    D    L ++
Sbjct: 409 VSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNE 468

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           + + G          LI  FC  G+     E++ ++   GL P    ++ LI   C    
Sbjct: 469 MSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 528

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                 +   M+      D+FT+  ++  LCK+ K  EA      +   G +P+TV +  
Sbjct: 529 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 588

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+G    G    A  ++ EM   G  P  +TY S++ G C+  +L EA++  K +    
Sbjct: 589 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVP 648

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               TV YNTL+  +C  G   +A  LF EM Q+ I  D  TY +LI G C++GK V
Sbjct: 649 AAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTV 705



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 167/369 (45%), Gaps = 36/369 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDS--LVEARAFKVAMDFLDSTGF----------- 134
           L+++F +W+    G   D +   V   +  LV AR +  A   L                
Sbjct: 92  LALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGA 151

Query: 135 --------SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLGC 183
                   + NP+  ++ I+     G+I+++   F   + MG++G   S+ T N+ L   
Sbjct: 152 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIF---RLMGLYGFNPSVYTCNAILGSV 208

Query: 184 IKIDRTDLVW---------KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           +K      VW         K+  D+     LI   C +G   +   L++++ + G  P  
Sbjct: 209 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 268

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             +N ++  +C+K  F    ELL  M ++    D  TY  +I+ LC+S +  + Y +  D
Sbjct: 269 VTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRD 328

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +++R   P+ V Y T+I+G    G +  A ++  EM+  GL PN  T+N++I G+    N
Sbjct: 329 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 388

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            +EA ++   M  KG   + V+Y  L+ GLC +   D A   +  M + G+    ITY  
Sbjct: 389 FKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 448

Query: 415 LIQGYCKEG 423
           +I G CK G
Sbjct: 449 MIDGLCKNG 457



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 12/339 (3%)

Query: 92   FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCL 148
            +F+    + G +PD+V+ N + D        +   D L   G     PN  +  + +   
Sbjct: 745  YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 804

Query: 149  CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
             +   +  +F  +  +   G+     T +S +LG  + +  ++  K+    I  G     
Sbjct: 805  SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 864

Query: 205  -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 LI   C +G+++  ++L++ +   G+  +    + ++S       F     +LH 
Sbjct: 865  YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHE 924

Query: 260  MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
            M  +  +P++  Y  +INGLC+      A+ V  ++      P  V  + ++  L K G 
Sbjct: 925  MSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGK 984

Query: 320  LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              +A  +   M+   L+P   ++ +++H  C+  N+ EA  L   M + G     V+YN 
Sbjct: 985  ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNV 1044

Query: 380  LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            LI GLC  G    A+ L+EEM   G   +  TY  LI+G
Sbjct: 1045 LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1083



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 158/359 (44%), Gaps = 12/359 (3%)

Query: 80   LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
            L ++   +++I F +   +     P+ V      D + +A  +K  + F   +D+ G +P
Sbjct: 698  LCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTP 757

Query: 137  NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
            +  +    I      G IE+      ++       ++ T+N  L G  K       + LY
Sbjct: 758  DIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLY 817

Query: 197  HDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
              +I +G L         +   C    +  G ++L+  +  G+  +   FN LIS+ C  
Sbjct: 818  RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCAN 877

Query: 248  KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                   +L+  M +   + D  T + +++ L ++ +  E+  V +++ ++G  P++  Y
Sbjct: 878  GEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 937

Query: 308  TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
              +I+GLC++G +  A  +  EMI   + P     ++M+    +    +EA  L + ML 
Sbjct: 938  IGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLK 997

Query: 368  KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                 T  ++ TL+   C +G   EA  L   M+  G+  D+++YN LI G C +G + 
Sbjct: 998  MKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMA 1056



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P  +T   ++  + KS + +  +    ++ +R   PD   +  +I+ LC  G    +  +
Sbjct: 196 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 255

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M   G  P   TYN+++H YC+    + A  L   M  KG      TYN LI  LC 
Sbjct: 256 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 315

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             R  + Y L  +M ++ I  + +TYNTLI G+  EGK++
Sbjct: 316 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 355



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 136/338 (40%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P   +   L   L +    + A  FL S    P      +Y   +  +C+SG + +A
Sbjct: 613 GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKA 672

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
              F ++ +  +     T+ S + G  +  +T +      +    G +          + 
Sbjct: 673 VSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVD 732

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G+   G     Q+   G  P+    N +I  +       + ++LL  M  +N  P
Sbjct: 733 GMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGP 792

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++G  K +    ++ ++  +   G +PD +   +++ G+C+   L    K+ 
Sbjct: 793 NLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKIL 852

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              I +G+  + YT+N +I   C    +  A  L K M   G      T + +++ L  +
Sbjct: 853 KAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRN 912

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            R  E+  +  EM+++GI  +   Y  LI G C+ G I
Sbjct: 913 HRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDI 950


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 145/283 (51%), Gaps = 12/283 (4%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
             F   ++  +  V  ++ T+   +  C +  R DL +    ++I+ GY         L+
Sbjct: 81  SGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLL 140

Query: 207 QAFCNDGKVSEGYEL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--AR 263
           ++ C + + S    + LR++ E G  P   ++N L+   C +       ELLH M     
Sbjct: 141 KSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGG 200

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  PD  +Y  +I+GL K     +AY  ++++ ERG +PD V Y T++  LCK   +  A
Sbjct: 201 DCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKA 260

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +   M+  G++P+  TYNS++HGYC     +EA  + ++M   G     VTY +L+  
Sbjct: 261 MDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDY 320

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC +GR  EA  + + M ++G+  +VITY+TL+ GY  +G +V
Sbjct: 321 LCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALV 363



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 141/305 (46%), Gaps = 12/305 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
           G+   P      ++ LC       A      ++ E+G    + ++N  L G     R+  
Sbjct: 128 GYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQE 187

Query: 192 VWKLYH-----------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
             +L H           D++    +I     +G   + Y    ++LE G++P+   +N +
Sbjct: 188 ALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTI 247

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++  C+ +   +  ++L+ MV     PD  TY  +++G C S +  EA  +   +   G 
Sbjct: 248 VAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGV 307

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD V YT+++  LCK G   +ARK+   MI +GL PN  TY++++HGY     L E + 
Sbjct: 308 EPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRD 367

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L   M+  G       ++ LI     H   D A  +F +M Q+ +  DV+TY TLI G C
Sbjct: 368 LLDLMVRNGIQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLC 427

Query: 421 KEGKI 425
           K G++
Sbjct: 428 KSGRV 432



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/284 (22%), Positives = 138/284 (48%), Gaps = 11/284 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG--VFGSIKTWNS 178
           A  + +  +   G +P+  S  + ++ LC     +EA      + + G      + ++++
Sbjct: 152 AMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYST 211

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDG 229
            + G  K   +D  +  YH+++E G L         + A C    + +  ++L +++++G
Sbjct: 212 IIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNG 271

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           ++P+   +N ++  +C          +L  M +    PD  TY  +++ LCK+ + +EA 
Sbjct: 272 VMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEAR 331

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           ++ + + +RG  P+ + Y+T++HG    G L + R +   M+  G+ P+ + ++ +I   
Sbjct: 332 KILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICAC 391

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
            +  N++ A  +  +M  +      VTY TLI GLC  GR D+A
Sbjct: 392 TKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/226 (25%), Positives = 95/226 (42%), Gaps = 29/226 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N +  +L +A+A   AMD L+     G  P+  +    +   C SG  +EA
Sbjct: 236 GILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEA 295

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                K+   GV     T+ S                          L+   C +G+  E
Sbjct: 296 IGILEKMCSDGVEPDAVTYTS--------------------------LMDYLCKNGRCIE 329

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             ++L  +++ GL P    ++ L+  +  K     + +LL  MV     PD   +  +I 
Sbjct: 330 ARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILIC 389

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              K +    A  VF+ ++++   PD V Y T+I GLCK G + DA
Sbjct: 390 ACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 164/348 (47%), Gaps = 34/348 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---------LDSTGFSPNPNSLELYIQCLCES 151
           G +P+ ++   L   L       +A+           L    F P   S  + I  LC+ 
Sbjct: 196 GCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKD 255

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW----KLYHDLIESGY--- 204
              +EA   F ++K  G+  ++            I  T L+W    +L+++++  G    
Sbjct: 256 RREDEARDLFEEMKVQGMTPTV------------ISYTSLMWEEAKRLFNEMVNQGVQPN 303

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +GKV E  +LL  +++ G+VP    +N LI  FC   +     EL  
Sbjct: 304 VVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFV 363

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           +M ++   PD   Y  +ING CK+ K  EA +++N + + G  PD   Y  ++ GL + G
Sbjct: 364 SMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGG 423

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +GDA+K++  M   G+  + Y Y   ++G C+   L EA  L  ++           +N
Sbjct: 424 KVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFN 483

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            LI GLC  G+ + A+ LFE++ Q+ +  DV+TYN +I  +C+ G++V
Sbjct: 484 CLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVV 531



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 165/373 (44%), Gaps = 50/373 (13%)

Query: 69  NFNDPLFFREFLKQ-----QNNVLLSIRFFQWLH--SHYGFSPDLVSCNVLFDSLVEARA 121
           NFN P+ F++ L       +   + +I+ FQ+ H   +   +P L S   L   L + + 
Sbjct: 52  NFNTPISFQQQLSMFLHNCKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKH 111

Query: 122 FKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           +       +    +G SP+  +L + + CLC    + E     + +   G    I T+ +
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
                                     LI+  C + ++S+   L  ++ + G  P    + 
Sbjct: 172 --------------------------LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYG 205

Query: 239 KLISRFCEKKNFGRVSELLHTMV------ARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
            L+   C   N     +L   M+        N  P   +Y  +I+ LCK R+  EA  +F
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            ++K +G  P  + YT+++       W  +A++++ EM+++G+ PN  T+N +I   C+ 
Sbjct: 266 EEMKVQGMTPTVISYTSLM-------W-EEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 317

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             + EAK L + M+ +G     +TYN+LI G CL G  + A  LF  M  KG   DVI Y
Sbjct: 318 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 377

Query: 413 NTLIQGYCKEGKI 425
             LI GYCK  K+
Sbjct: 378 TVLINGYCKTSKV 390



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/252 (29%), Positives = 117/252 (46%), Gaps = 35/252 (13%)

Query: 210 CNDGKVS--EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           C  G ++  + ++    ++     P  ++F  L+S   + K++ +V  L + M     +P
Sbjct: 70  CKTGNITAIQAFQFFHLMMYSNPTPPLSSFTHLLSGLAKIKHYSQVFYLYNQMRLSGISP 129

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T   ++N LC   +  E   V   +  RGY+PD V YTT+I GLC    +  A  ++
Sbjct: 130 DCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLF 189

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG--YG----ETTVTYNTLI 381
             M   G  PN  TY +++ G CR  N+  A +LH+EML+    YG       ++Y+ +I
Sbjct: 190 TRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIII 249

Query: 382 AGLCLHGRTDEAYHLFE---------------------------EMAQKGIFRDVITYNT 414
             LC   R DEA  LFE                           EM  +G+  +V+T+N 
Sbjct: 250 DALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWEEAKRLFNEMVNQGVQPNVVTFNV 309

Query: 415 LIQGYCKEGKIV 426
           LI   CKEGK++
Sbjct: 310 LIDVLCKEGKVI 321



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 144/318 (45%), Gaps = 14/318 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G +P ++S    + SL+   A ++  + ++  G  PN  +  + I  LC+ G + EA   
Sbjct: 272 GMTPTVIS----YTSLMWEEAKRLFNEMVNQ-GVQPNVVTFNVLIDVLCKEGKVIEAKDL 326

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQAFCN 211
              + + G+  ++ T+NS + G   +   +   +L+          D+I    LI  +C 
Sbjct: 327 LEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCK 386

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             KV E  +L   +L+ G  P+   +  L++   +    G   +L   M       D + 
Sbjct: 387 TSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYI 446

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   +NGLCK+    EA  +FN LK      D   +  +I GLCK G L  A +++ ++ 
Sbjct: 447 YGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLP 506

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + L P+  TYN MIH +CR   + +A  L ++M   G     +TY TLI G     + +
Sbjct: 507 QEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLE 566

Query: 392 EAYHLFEEMAQKGIFRDV 409
           +   L   M Q+ +  DV
Sbjct: 567 KVVELLHMMVQRDVSLDV 584


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 155/329 (47%), Gaps = 13/329 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           S  +L   L +A+  + A+     +   G SPN  +    I  LC+SG + +A   F  +
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            + GV  S+ T+N+ ++G  K+ R +   K+   + ++G          LI   C D K 
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKT 373

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  ELL   +++G  P    F  LI+ +C  + F     + + M++     D   + ++
Sbjct: 374 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 433

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           IN L K  +  EA  + N++   G VP+ + YT++I G CK G +  A ++   M   G 
Sbjct: 434 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 493

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN +TYNS+++G  +   L +A  L  +M   G     +TY TL+ G C     D A+ 
Sbjct: 494 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 553

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LFE M Q G+  D   Y  L    CK G+
Sbjct: 554 LFEMMEQNGLKPDEHAYAVLTDALCKAGR 582



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 161/349 (46%), Gaps = 27/349 (7%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF----KVAMDFLDSTGFSPNPNSLELY 144
           ++ FF+WL    GF     S   L   L   RA     ++ +  L+ +  + +       
Sbjct: 73  ALAFFEWLARRDGFRHTADSHAALLHLLSRRRAPAQYERLVVSMLNCSDTAEDMRVSADA 132

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           IQ +  +G    A              S K +N AL    + D T+ + ++Y  L++ G 
Sbjct: 133 IQAIRRTGSARLAL-------------SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGL 179

Query: 205 L---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           L         I+++C +G ++  +   R +LE GL PE    N L+  +C      +   
Sbjct: 180 LPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACW 239

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M       + ++Y  +I GLC ++   +A  +F  +K  G  P+   +T +I GLC
Sbjct: 240 LFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLC 299

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +GDAR ++  M   G++P+  TYN+MI GY ++  + +A ++ + M   G      
Sbjct: 300 KSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDW 359

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TYNTLI GLC   +T+EA  L     ++G    V+T+  LI GYC   K
Sbjct: 360 TYNTLIYGLC-DQKTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEK 407



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           GF+P +V+   L +    A  F  A+   +    S     L+++   I  L +   ++EA
Sbjct: 387 GFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEA 446

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++   G+  ++ T+ S + G  K  + D+  ++   +   G          L+  
Sbjct: 447 KELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 506

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              D K+ +   LL ++ +DG++P    +  L+   C++ +F     L   M      PD
Sbjct: 507 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPD 566

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  + + LCK+ +  EAY     +  +G     V YTT+I G  K G    A  +  
Sbjct: 567 EHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIE 623

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G  P+ YTY+ ++H  C+   L EA  +  +M  +G   T   Y  LI  +   G
Sbjct: 624 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 683

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D A  ++ EM   G      TY   I  YCKEG++
Sbjct: 684 KHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 720



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 158/391 (40%), Gaps = 66/391 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  P++++   + D   ++    +A++ L   +  G  PN  +    +  L +   +
Sbjct: 454 SANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKL 513

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            +A    +K+++ G+  ++ T+ + L G       D  ++L+  + ++G          L
Sbjct: 514 HKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 573

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
             A C  G+  E Y     ++  G+      +  LI  F +  N    + L+  M+    
Sbjct: 574 TDALCKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGC 630

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD++TY  +++ LCK ++  EA  + + +  RG       YT +I  + + G    A++
Sbjct: 631 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 690

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           M+ EM   G  P+  TY   I+ YC+   LE+A+ L  +M  +G     VTYN LI G  
Sbjct: 691 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 750

Query: 386 LHGRTDEAY--------------------------------------------------- 394
             G  D A+                                                   
Sbjct: 751 HMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITW 810

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L E M + G+   V TY++LI G+CK G++
Sbjct: 811 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRL 841



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 163/374 (43%), Gaps = 42/374 (11%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           +  LL D  ++N       + + K+  ++  + R+F+ L    G  P+  +CN L     
Sbjct: 176 QDGLLPDTVTYN----TMIKSYCKE-GDLTTAHRYFRLLLEG-GLEPETFTCNALVLGYC 229

Query: 118 EARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
                + A      +   G   N  S  + IQ LC++  + +A   F  +K  G   +++
Sbjct: 230 RTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVR 289

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            +                           +LI   C  G+V +   L   + ++G+VP  
Sbjct: 290 AFT--------------------------FLISGLCKSGRVGDARLLFDAMPQNGVVPSV 323

Query: 235 TAFNKLISRFCEKKNFGRVSELLHT--MVARNRA-PDNFTYEEVINGLCKSRKRLEAYRV 291
             +N +I  +      GR+++ L    ++ +N   PD++TY  +I GLC  +K  EA  +
Sbjct: 324 MTYNAMIVGY---SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEEL 379

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            N+  + G+ P  V +T +I+G C      DA +M  +M+      +   +  +I+   +
Sbjct: 380 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 439

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D L+EAK L  E+   G     +TY ++I G C  G+ D A  + + M + G   +  T
Sbjct: 440 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 499

Query: 412 YNTLIQGYCKEGKI 425
           YN+L+ G  K+ K+
Sbjct: 500 YNSLMYGLVKDKKL 513



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++RF   +  GRV   L   V     PD  TY  +I   CK      A+R F  L E G 
Sbjct: 158 LARFDMTEYMGRVYSQL---VQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGL 214

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+T     ++ G C+ G L  A  ++  M   G   NEY+Y  +I G C    + +A  
Sbjct: 215 EPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALV 274

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L   M   G       +  LI+GLC  GR  +A  LF+ M Q G+   V+TYN +I GY 
Sbjct: 275 LFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 334

Query: 421 KEGKI 425
           K G++
Sbjct: 335 KLGRM 339



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 25/318 (7%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +  + +  LC+   + EA     ++   G+  +I  +   +   ++  + D  
Sbjct: 629 GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHA 688

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++Y+++  SG+          I ++C +G++ +  +L+ ++  +G+ P+   +N LI  
Sbjct: 689 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 748

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR----KRLEAYRVFN------ 293
                   R    L  MV  +  P+ +TY  ++  L K      + ++   ++N      
Sbjct: 749 CGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDI 808

Query: 294 --DLKER----GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
              L ER    G  P    Y+++I G CK G L +A  +   M  KGL PNE  Y  +I 
Sbjct: 809 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 868

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C     E+A      M + G+     +Y  L+ GLC  G  ++   LF ++ + G   
Sbjct: 869 CCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNH 928

Query: 408 DVITYNTLIQGYCKEGKI 425
           D + +  L  G  K G +
Sbjct: 929 DEVAWKILNDGLLKAGYV 946



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN  +    R D  E   R++ +++  G    TVTYNT+I   C  G    A+  F  + 
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 210

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           + G+  +  T N L+ GYC+ G++
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGEL 234


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGCMPSVVT 418


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 168/359 (46%), Gaps = 69/359 (19%)

Query: 136 PNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
           P+PN +  +L +   C+ G++EEA      +K    F +++++N  LLG I+  +    W
Sbjct: 287 PHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAW 346

Query: 194 KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
            +  +++  G          ++   C +G +S+   L+  ++ +G++P+   ++ L+  +
Sbjct: 347 IVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGY 406

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFT--------YEE---------------------- 274
           C K      + LLH M++ N +P+ +T        ++E                      
Sbjct: 407 CSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDT 466

Query: 275 -----VINGLCKSRKRLEAYRVFNDLKERGYV-----------------------PDTVM 306
                +IN LC + +  +A  + N +   G                         PD V 
Sbjct: 467 VTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVT 526

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T+I GLCK G L DA+K + EM+ KGL P+   Y++ IH +CR   +  A ++ K+M 
Sbjct: 527 YSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDME 586

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +G  +T  TYN+LI GL    +  E Y L +EM +KG+  DV TYN ++   C+ G+I
Sbjct: 587 KRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRI 645



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/356 (28%), Positives = 162/356 (45%), Gaps = 21/356 (5%)

Query: 90  IRFFQWLHSHYGF---SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLEL 143
           +    WL+        SP+  + N+L   L ++   + A +  D   + G  PN  +  +
Sbjct: 128 VELVSWLYKDMVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGI 187

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            ++  C +GL  +      +++ MG+  +   +N+ +    K  +T    KL   + E G
Sbjct: 188 LVRGYCRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDG 247

Query: 204 YL---------IQAFCNDGKVSEGYELLRQVLED---GLV-PENTAFNKLISRFCEKKNF 250
            +         I A C  GK+ E   + R +  D   GL  P    +  ++  FC++   
Sbjct: 248 LVPHVETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGML 307

Query: 251 GRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                L+ TM  RN    N  +Y   + GL ++ K LEA+ V  ++   G  PD   Y  
Sbjct: 308 EEAKTLVDTM-KRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNI 366

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           V+ GLCK G L DAR +   MI  G+LP+  TY++++HGYC    + EA  L  EM+   
Sbjct: 367 VMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNN 426

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T T N L+  L   GR  EA +L ++M +KG   D +T N +I   C  G++
Sbjct: 427 CSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQL 482



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 146/331 (44%), Gaps = 50/331 (15%)

Query: 145 IQCLCESGLIEEAFCAFSKLKE--MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
           +  L +SG   +A   F  L+        SI  +N  L  CI+ +R +LV  LY D++ +
Sbjct: 82  VTVLAKSGFFNKAISHFKSLRSNFPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDMVLA 141

Query: 203 --------------------------------------------GYLIQAFCNDGKVSEG 218
                                                       G L++ +C  G  S+G
Sbjct: 142 RVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKG 201

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ELL Q+   G++P N  +N LIS FC++       +L+  M      P   T+   I+ 
Sbjct: 202 LELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISA 261

Query: 279 LCKSRKRLEAYRVFNDLK---ERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           LC S K LEA R+F D++   E G   P+ + Y  ++ G CK G L +A+ +   M    
Sbjct: 262 LCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNA 321

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              N  +YN  + G  R   L EA  + KEML  G      +YN ++ GLC +G   +A 
Sbjct: 322 NFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDAR 381

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M + GI  D +TY+TL+ GYC +GK+
Sbjct: 382 MLMGLMIRNGILPDTVTYSTLLHGYCSKGKV 412



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 146/321 (45%), Gaps = 32/321 (9%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  S  + +  LC++G++ +A      +   G+     T+++ L G     +    
Sbjct: 356 GIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEA 415

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L H++I +           L+ +   +G++SE   LL+++ E G   +    N +I+ 
Sbjct: 416 NNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINA 475

Query: 244 FCEKKNFGRVSELLHTMVARNRA-----------------------PDNFTYEEVINGLC 280
            C      +  E+++ M     A                       PD  TY  +I+GLC
Sbjct: 476 LCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLC 535

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K+ +  +A + F ++  +G  PD+ +Y T IH  C+ G +  A ++  +M  +G      
Sbjct: 536 KAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQ 595

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYNS+I G    + + E   L  EM +KG      TYN ++  LC  GR ++A  + +EM
Sbjct: 596 TYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEM 655

Query: 401 AQKGIFRDVITYNTLIQGYCK 421
            QKGI  ++ ++  LI+ +CK
Sbjct: 656 LQKGISPNISSFRILIKAFCK 676



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 151/335 (45%), Gaps = 25/335 (7%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           SP+  +CNVL  SL +      A + L   +  G+  +  +  + I  LC +G +++A  
Sbjct: 428 SPNTYTCNVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKA-- 485

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIK------IDRTDLVWKLYHDLIESGYLIQAFCNDG 213
                  + +   + T  SA LG +       +D T    K   DL+    +I   C  G
Sbjct: 486 -------IEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIISGLCKAG 538

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           ++ +  +   +++  GL P++  ++  I  FC +       ++L  M  R       TY 
Sbjct: 539 RLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNKTLQTYN 598

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +I GL    +  E Y + ++++E+G  PD   Y  +++ LC+ G + DA  +  EM+ K
Sbjct: 599 SLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQK 658

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGET--TVTYNTLIAGLCLHGRT 390
           G+ PN  ++  +I  +C+  + + +  + +  L+  G+ E   T+ +N L+ G    G+ 
Sbjct: 659 GISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVG----GKV 714

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            EA  LFE    +        Y  LI   CK+ K+
Sbjct: 715 AEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKL 749



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/192 (29%), Positives = 90/192 (46%), Gaps = 15/192 (7%)

Query: 237 FNKLISRFCE-KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR-VFND 294
           FNK IS F   + NF              + P  + Y  ++   C    R+E    ++ D
Sbjct: 91  FNKAISHFKSLRSNFPE------------KQPSIYLYNVLLKS-CIRENRVELVSWLYKD 137

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +      P+   +  +I  LC  G L DAR+++ +M  +G  PNE+T+  ++ GYCR   
Sbjct: 138 MVLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGL 197

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
             +   L  +M   G     V YNTLI+  C  G+T +A  L ++M + G+   V T+N+
Sbjct: 198 ASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNS 257

Query: 415 LIQGYCKEGKIV 426
            I   C  GKI+
Sbjct: 258 RISALCGSGKIL 269



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/304 (21%), Positives = 128/304 (42%), Gaps = 32/304 (10%)

Query: 103 SPDLVSCNVLFDSLVEA-RAFKVAMDFLD--STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PDLV+ + +   L +A R       F++  S G  P+    + +I   C  G I  AF 
Sbjct: 521 TPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQ 580

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
               +++ G   +++T+NS +LG                            +  ++ E Y
Sbjct: 581 VLKDMEKRGCNKTLQTYNSLILG--------------------------LGSKNQIFELY 614

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
            L+ ++ E G+ P+   +N +++  CE         +L  M+ +  +P+  ++  +I   
Sbjct: 615 GLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAF 674

Query: 280 CKSRKRLEAYRVFN-DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           CK+     ++ VF   L   G+     +YT + + L   G + +A++++   + +     
Sbjct: 675 CKACDFKASHEVFEIALNVCGH--KEALYTLMFNELLVGGKVAEAKELFETALDRSFDIG 732

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
            + Y  +I   C+ + LE A  +   ++DKGY     ++  +I G    G    A  L E
Sbjct: 733 NFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMPVIDGFGKMGNKHVADELAE 792

Query: 399 EMAQ 402
            M +
Sbjct: 793 RMME 796


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 164/364 (45%), Gaps = 12/364 (3%)

Query: 73  PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST 132
           P    + +  Q + LL++  F+      GF     + + L   L  AR FK     +   
Sbjct: 100 PARVHKLIASQTDALLAMEIFEVASRQPGFKHSYSTYHTLICKLGRARQFKTMEGLIQQM 159

Query: 133 GFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
                P +  L+   I+   E G+  EA  AF ++ E G     K +N  L+  I+    
Sbjct: 160 RKDGCPYTPGLFVDIIEIYGEVGMPNEAIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCL 219

Query: 190 DLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           +    L+  L E G          LI+A C+  K+S  Y L  ++ + G +P+   ++ L
Sbjct: 220 ETALSLFKKLHEFGISPNTRTYNILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSIL 279

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           +   C K        +L  M+ +   PD  TY  ++N LC+     EAYR+ + +K  G 
Sbjct: 280 MQGLCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGC 339

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD + Y TVI G C+ G   DA ++  +M   G LPN  +Y ++++G C     +EAK 
Sbjct: 340 NPDVINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKD 399

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             +EM+  G+      Y+ LI GLC  G+  EA  +   M ++ +     T++ L+   C
Sbjct: 400 FVEEMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRIC 459

Query: 421 KEGK 424
           ++ +
Sbjct: 460 EDSQ 463



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 138/314 (43%), Gaps = 32/314 (10%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           F Q L   +G+ P     NVL   L+E +  + A+     L   G SPN  +  + I+  
Sbjct: 191 FHQMLE--FGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRAH 248

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
           C S  +  A+  F+K+ + G    ++T++                           L+Q 
Sbjct: 249 CHSDKLSHAYFLFNKMHKQGCIPDVETYS--------------------------ILMQG 282

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   +V     +L ++L  G VP+   +N L++  C K N      LL  M      PD
Sbjct: 283 LCRKSQVKTALGVLDEMLNKGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPD 342

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  VI G C+  + L+A ++  D+ E G +P+ + Y T+++GLC  G   +A+    
Sbjct: 343 VINYNTVITGFCREGRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVE 402

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G +P+   Y+ +I G C    + EA  +   M  +       T++ L+  +C   
Sbjct: 403 EMISNGFIPHISIYHLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICEDS 462

Query: 389 RTDEAYHLFEEMAQ 402
           +T EA  L +++++
Sbjct: 463 QT-EARELVDKLSE 475



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/235 (29%), Positives = 110/235 (46%), Gaps = 6/235 (2%)

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           +  YH LI      + F    K  EG  L++Q+ +DG       F  +I  + E      
Sbjct: 133 YSTYHTLICKLGRARQF----KTMEG--LIQQMRKDGCPYTPGLFVDIIEIYGEVGMPNE 186

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +  H M+     P    +  ++  L + +    A  +F  L E G  P+T  Y  +I 
Sbjct: 187 AIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIR 246

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C    L  A  ++ +M  +G +P+  TY+ ++ G CR   ++ A  +  EML+KGY  
Sbjct: 247 AHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKGYVP 306

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             +TYNTL+  LC      EAY L  +M   G   DVI YNT+I G+C+EG+ ++
Sbjct: 307 DALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALD 361


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 153/329 (46%), Gaps = 11/329 (3%)

Query: 106 LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           LV  N   D L EA  F+V           PN  +  + I  LCE+G +EEAF    ++ 
Sbjct: 212 LVLANCRRDDLGEA--FRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 269

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVS 216
           E G   S +T+   +     I  TD   K+  ++              LI   C +GK+ 
Sbjct: 270 EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIE 329

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   + R++L+ GL P    FN LI+ +C++       +LL  M   N  P+  TY E++
Sbjct: 330 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 389

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            GLC+  K  +A+ +   + + G +PD V Y  ++ G CK G L  A  ++  M   GL 
Sbjct: 390 EGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE 449

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+ +T+ ++I G C++  LE+A  +   M+ KG     VT+  LI G C  G+  +   L
Sbjct: 450 PDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFL 509

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           FE M +        T+N  +    K+ K+
Sbjct: 510 FENMVENRCLTTAHTFNCFLDALGKDYKL 538



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P   +  VL  +  +      AM  LD   +    PN ++  + I  LC  G IEEA
Sbjct: 272 GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 331

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
              F K+ + G+   I T+N+ + G  K       ++L   ++E G           L++
Sbjct: 332 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL-SVMEKGNCKPNIRTYNELME 390

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   K  + + LLR+V+++GL+P+   +N L+  FC++        + ++M +    P
Sbjct: 391 GLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEP 450

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FT+  +I+GLCK  +  +A  +   + ++G   D V +T +I G CK+G   D   ++
Sbjct: 451 DGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLF 510

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+    L   +T+N  +    +   L EA  +  +M+  G   + VT+  LI G C  
Sbjct: 511 ENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRA 570

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T  +  + E M Q G   +V TY  +I G C  G++
Sbjct: 571 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRV 608



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 165/382 (43%), Gaps = 23/382 (6%)

Query: 54  KPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLF 113
           KP WE        + +    L  +    Q NNV L +RFF+W+     +  DL     L 
Sbjct: 28  KPNWEHDKTLKSLASHMTPHLAGKIIGLQSNNVELGVRFFKWVCRQSSYCYDLDGRIQLL 87

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQ-CLCESGLIEEAFCAFSKLKEMGVFGS 172
             LV    F VA              ++ L IQ C      + +   A   + E+G   S
Sbjct: 88  GVLVSRDLFGVAQ------------KAVVLLIQECEDSENGVVKLMGALDGMTELGFRLS 135

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLR 223
              +++ L+   K++   + + +Y  ++  G+         ++ A C +G V        
Sbjct: 136 YPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGFVQAAEMFCC 195

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA-RNRAPDNFTYEEVINGLCKS 282
           +VL  G   +      L+   C + + G    +   M    N  P++ TY  +I+GLC++
Sbjct: 196 KVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEA 255

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            +  EA+++  ++ E+G  P T  YT +I   C +G    A KM  EM  K  +PN +TY
Sbjct: 256 GRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTY 315

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             +I   CR   +EEA  + ++ML  G     +T+N LI G C  G    A+ L   M +
Sbjct: 316 TILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEK 375

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
                ++ TYN L++G C+  K
Sbjct: 376 GNCKPNIRTYNELMEGLCRVSK 397



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 134/331 (40%), Gaps = 44/331 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P   +    I   C+ G +  AF   S +++     +I+T+N  + G  ++ ++   
Sbjct: 342 GLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKA 401

Query: 193 WKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L   ++++G L         +  FC +G+++  + +   +   GL P+   F  LI  
Sbjct: 402 FLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDG 461

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----- 298
            C+     + + +L +MV +  + D  T+  +I+G CK  K  +   +F ++ E      
Sbjct: 462 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 521

Query: 299 ------------------------------GYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                                         G VP  V +T +I G C+ G    + KM  
Sbjct: 522 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 581

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  PN YTY  +I+G C    +EEA+ +   M   G      TY  L+      G
Sbjct: 582 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 641

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R D A+ +   M + G   +   Y+ L+ G+
Sbjct: 642 RLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 672



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 151/340 (44%), Gaps = 15/340 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N+L D   +     +A +    ++S G  P+  +    I  LC+ G +E+A
Sbjct: 412 GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 471

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                 + + G+     T+ + + G  KI +   V  L+ +++E+  L         + A
Sbjct: 472 NGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDA 531

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              D K++E   +L ++++ GLVP       LI   C         ++L  M     +P+
Sbjct: 532 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 591

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +INGLC + +  EA  +   +   G  P+   Y  ++    K G L  A ++  
Sbjct: 592 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 651

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK--EMLDKGYGETTVTYNTLIAGLCL 386
            M+  G  PN + Y++++ G+   +    A+ L    ++  +         N L + +  
Sbjct: 652 TMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFR 711

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               D A  + +E+ + G+  + + YN L+ G CKEG+I+
Sbjct: 712 LMDVDHALKIRDEIKKCGVPTEDL-YNFLVVGLCKEGRII 750



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/352 (20%), Positives = 139/352 (39%), Gaps = 64/352 (18%)

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           H   G + D+     LF+++VE R    A  F               ++  L +   + E
Sbjct: 497 HCKIGKAKDVC---FLFENMVENRCLTTAHTF-------------NCFLDALGKDYKLNE 540

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A     K+ + G+  S+ T    + G  +   T L  K+   + ++G          +I 
Sbjct: 541 ANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 600

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             CN+G+V E   +L  +   G+ P +  +  L+    +     R  +++ TMV     P
Sbjct: 601 GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQP 660

Query: 268 DNFTYEEVINGLCKSRKRL-------------------------------------EAYR 290
           ++  Y  +++G   S   +                                      A +
Sbjct: 661 NSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALK 720

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           + +++K+ G VP   +Y  ++ GLCK G + +A ++  +M+  GL P++   +S+I  YC
Sbjct: 721 IRDEIKKCG-VPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYC 778

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           +    +      K +LD  +  +  +Y  +I GL   GR  EA  L  ++ +
Sbjct: 779 KTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 830



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
             + + E G+      Y+T++  L K+     A  ++  M+++G +     Y ++++  C
Sbjct: 123 ALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALC 182

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DV 409
           +   ++ A+    ++L  G+G  T    +L+   C      EA+ +FE+M+++   R + 
Sbjct: 183 KNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNS 242

Query: 410 ITYNTLIQGYCKEGKI 425
           +TY+ LI G C+ G++
Sbjct: 243 VTYSILIHGLCEAGRL 258


>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
 gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
          Length = 807

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 168/361 (46%), Gaps = 24/361 (6%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF 134
           F    L +  N+ L++R+F+ + S     P   +  +L D L  A     A  + +    
Sbjct: 165 FLLNALCKSGNLELALRYFEKMSS----IPCAATWTILIDGLFRAIRVDEACYYFEEMKH 220

Query: 135 SPNPN--SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           +  PN  +  + I  L ++G + EA      L+EM V  ++  + S + G  K       
Sbjct: 221 TAIPNNWTYTVVINGLVKAGKVAEAE---RVLQEMPV-PTLANYTSVIGGHCKAGDMGKA 276

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L  D+   GY         LI   C   ++   YELL ++  +  VP+   ++ LI+ 
Sbjct: 277 YHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAG 336

Query: 244 FCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
            C  K      +LL T+  RN     P+  +Y  +I+G  K+ +  +AY++F ++   G 
Sbjct: 337 LCRAKRLSEARDLLGTL--RNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQ 394

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD V Y+T+I GLC  G   +A     EM+ K +LP    Y+S+I G CR   L+ A  
Sbjct: 395 HPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAAST 454

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +   M+  G       YN+LI GLC  GR  +A    +EM ++G   D +TY TLI G C
Sbjct: 455 VFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLC 514

Query: 421 K 421
           +
Sbjct: 515 R 515



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 13/331 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD ++  +L   L      K+A    +     G  P   + +  +  LC+SG +E A   
Sbjct: 123 PDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELALRY 182

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW-KLYHDLIESGY----LIQAFCNDGKV 215
           F K+  +    +       L   I++D     + ++ H  I + +    +I      GKV
Sbjct: 183 FEKMSSIPCAATWTILIDGLFRAIRVDEACYYFEEMKHTAIPNNWTYTVVINGLVKAGKV 242

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           +E      +VL++  VP    +  +I   C+  + G+   LL  M  +    DN TY  +
Sbjct: 243 AEA----ERVLQEMPVPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTL 298

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-G 334
           I+G C+ ++   AY +  ++K   +VPD   Y  +I GLC+   L +AR +   + ++  
Sbjct: 299 IHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDD 358

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN  +YN++I G+ +   + +A +L  EM+  G     VTY+TLI GLC  GR  EA+
Sbjct: 359 CTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAH 418

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EEM  K I   V  Y+++I G C+ G++
Sbjct: 419 SYLEEMVGKKILPKVPVYSSVISGLCRAGEL 449



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 10/278 (3%)

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
           C++G + +A+     +K  G  G   T+N+ + G  ++   D  ++L  ++  + +    
Sbjct: 268 CKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDI 327

Query: 205 -----LIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                LI   C   ++SE  +LL  +  ED   P   ++N LI  F +        +L  
Sbjct: 328 FTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFL 387

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            MV   + PD  TY  +I GLC + +  EA+    ++  +  +P   +Y++VI GLC+ G
Sbjct: 388 EMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAG 447

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L  A  ++  M+  G  PN   YNS+I+G C+   L +AK   KEM ++G     VTY 
Sbjct: 448 ELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYG 507

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           TLI GLC   RTDEA  L+    ++GI     + N +I
Sbjct: 508 TLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVI 545



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 159/339 (46%), Gaps = 16/339 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+  D ++ N L       +    A + L+   S  F P+  + ++ I  LC +  + EA
Sbjct: 287 GYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEA 346

Query: 158 FCAFSKLK-EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                 L+ E     ++ ++N+ + G  K  R +  ++L+ +++ +G          LI+
Sbjct: 347 RDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIR 406

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             CN G+ SE +  L +++   ++P+   ++ +IS  C        S +  +MVA    P
Sbjct: 407 GLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAASTVFDSMVANGCQP 466

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   Y  +I GLCK+ +  +A     ++ ERG  PD V Y T+I GLC+     +A  ++
Sbjct: 467 NLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYGTLIVGLCRWSRTDEACDLY 526

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              + +G+  +E + N +I     +  LE+A+R+ + +L  G   T   Y T+I  LC  
Sbjct: 527 VRSLEQGIEISETSCNVVIAS---LRCLEQAQRVLRVVLATGNSPTAFFYATVIESLCKE 583

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               EA  L E+M   GI  D  T + L+   C++ K V
Sbjct: 584 NNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAV 622



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 138/314 (43%), Gaps = 7/314 (2%)

Query: 118 EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
           E  A     D + + G  PN       I  LC++G + +A     ++ E G      T+ 
Sbjct: 448 ELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDGVTYG 507

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGYLI-QAFCNDGKVS-----EGYELLRQVLEDGLV 231
           + ++G  +  RTD    LY   +E G  I +  CN    S     +   +LR VL  G  
Sbjct: 508 TLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVLATGNS 567

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    +  +I   C++ N     +LL  M+     PD  T + ++  +C+  K + A   
Sbjct: 568 PTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAVVAMAF 627

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI-HKGLLPNEYTYNSMIHGYC 350
             ++   G  P    Y+T+++ L K G   +A  +   +I H    P+E  Y  +I  Y 
Sbjct: 628 LEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYS 687

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
             D +EEA+ + +E+  K   ++ V YNTL+ GL         Y L  EM +     +  
Sbjct: 688 NQDQVEEARNVLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEA 747

Query: 411 TYNTLIQGYCKEGK 424
           T+N LIQG+C+ G+
Sbjct: 748 TFNILIQGFCRLGQ 761



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 145/353 (41%), Gaps = 65/353 (18%)

Query: 125 AMDFLDSTG----FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AM F    G    F    ++   + + L  +G  EEA+  F +     +     T+   +
Sbjct: 73  AMVFFGWAGTRQDFRHTVHTYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITYGILI 132

Query: 181 LGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G     +  L   LY ++++ G         +L+ A C  G +      LR   +   +
Sbjct: 133 RGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELA---LRYFEKMSSI 189

Query: 232 PENTAFNKLISRFCEKKNFGRV----SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           P    +  LI                 E+ HT +     P+N+TY  VINGL K+ K  E
Sbjct: 190 PCAATWTILIDGLFRAIRVDEACYYFEEMKHTAI-----PNNWTYTVVINGLVKAGKVAE 244

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A RV  ++     VP    YT+VI G CK G +G A  +  +M  KG   +  TYN++IH
Sbjct: 245 AERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIH 300

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL--------------------- 386
           G+CR+  ++ A  L +EM    +     TY+ LIAGLC                      
Sbjct: 301 GHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCT 360

Query: 387 ---------------HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                            R ++AY LF EM   G   DV+TY+TLI+G C  G+
Sbjct: 361 PNVVSYNTLIDGFSKAARVNDAYQLFLEMVTAGQHPDVVTYSTLIRGLCNAGR 413



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 8/232 (3%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           +L  D I  G LI+  CN GK+     L  ++++ GL P       L++  C+  N    
Sbjct: 120 ELIPDSITYGILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNLELA 179

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
                 M   +  P   T+  +I+GL ++ +  EA   F ++K    +P+   YT VI+G
Sbjct: 180 LRYFEKM---SSIPCAATWTILIDGLFRAIRVDEACYYFEEMKHTA-IPNNWTYTVVING 235

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           L K G + +A ++  EM     +P    Y S+I G+C+  ++ +A  L ++M  KGY   
Sbjct: 236 LVKAGKVAEAERVLQEMP----VPTLANYTSVIGGHCKAGDMGKAYHLLEDMKRKGYQGD 291

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +TYNTLI G C     D AY L EEM       D+ TY+ LI G C+  ++
Sbjct: 292 NLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLCRAKRL 343



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 143/370 (38%), Gaps = 46/370 (12%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           F PD+ + ++L   L  A+    A D L    +    +PN  S    I    ++  + +A
Sbjct: 323 FVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDA 382

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           +  F ++   G    + T+++ + G     R         +++    L         I  
Sbjct: 383 YQLFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISG 442

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++     +   ++ +G  P    +N LI   C+          +  M  R  +PD
Sbjct: 443 LCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPD 502

Query: 269 NFTYEEVINGLCK-------------------------------SRKRLE-AYRVFNDLK 296
             TY  +I GLC+                               S + LE A RV   + 
Sbjct: 503 GVTYGTLIVGLCRWSRTDEACDLYVRSLEQGIEISETSCNVVIASLRCLEQAQRVLRVVL 562

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  P    Y TVI  LCK   L +AR++  +MI  G+ P+  T ++++   CR D   
Sbjct: 563 ATGNSPTAFFYATVIESLCKENNLAEARQLLEDMIGAGIKPDGSTVDALVGAMCRQDKAV 622

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM-AQKGIFRDVITYNTL 415
            A    +EM+  G   +  TY+TL+  L   G+  EA+ +   + +    F D + Y  L
Sbjct: 623 VAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGL 682

Query: 416 IQGYCKEGKI 425
           I  Y  + ++
Sbjct: 683 IAAYSNQDQV 692



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 79/159 (49%), Gaps = 10/159 (6%)

Query: 269 NFTYEEVI-NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           N  YE +I  G C+     EAYR+F +   +  +PD++ Y  +I GLC  G L  A  ++
Sbjct: 94  NCFYEALIRTGQCE-----EAYRLFKEKWPQELIPDSITYGILIRGLCNFGKLKLACSLY 148

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ +GL P   T   +++  C+  NLE A R  ++M          T+  LI GL   
Sbjct: 149 EEMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSI---PCAATWTILIDGLFRA 205

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            R DEA + FEEM    I  +  TY  +I G  K GK+ 
Sbjct: 206 IRVDEACYYFEEMKHTAIPNN-WTYTVVINGLVKAGKVA 243



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           GW G  R+ +   +H        TYN       R    EEA RL KE   +     ++TY
Sbjct: 78  GWAG-TRQDFRHTVH--------TYNCFYEALIRTGQCEEAYRLFKEKWPQELIPDSITY 128

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             LI GLC  G+   A  L+EEM  +G+   V+T   L+   CK G +
Sbjct: 129 GILIRGLCNFGKLKLACSLYEEMVDRGLRPVVLTCKFLLNALCKSGNL 176



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/197 (21%), Positives = 84/197 (42%), Gaps = 19/197 (9%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS- 172
           ++L EAR     ++ +   G  P+ ++++  +  +C     ++A  A + L+EM   GS 
Sbjct: 584 NNLAEARQL---LEDMIGAGIKPDGSTVDALVGAMCRQ---DKAVVAMAFLEEMVRLGSK 637

Query: 173 --IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----------LIQAFCNDGKVSEGYE 220
             + T+++ L    K  +      +   LI              LI A+ N  +V E   
Sbjct: 638 PSVGTYSTLLNALFKAGKPSEAHVVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARN 697

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +L+++     +    A+N L+      +N   V ELL  M       +  T+  +I G C
Sbjct: 698 VLQELKSKWGIQSIVAYNTLLKGLFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFC 757

Query: 281 KSRKRLEAYRVFNDLKE 297
           +  +   A RV +++K+
Sbjct: 758 RLGQTDRAVRVLSEMKK 774


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E   +    T    L   +K+    LVW  Y ++++ GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILDCGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G +     +   + + GL P   +FN L++ +    +      
Sbjct: 133 PASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGLCK  K  +A  +F+++ ++G VP+ V +TT+I G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   +  A +++ +M+ + L P+  TYN++I+G C+  +L++A  L  EM  KG     +
Sbjct: 253 KNRRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M Q+ I  D + Y  LI G C+EG+ ++
Sbjct: 313 TYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLD 364



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/316 (26%), Positives = 151/316 (47%), Gaps = 12/316 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F +       P SL  +   +   C+ G I  A   F+ +
Sbjct: 103 TCRKVLEHLMKLKYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAI 162

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKV 215
            + G+  S+ ++N+ + G I++   D  ++L   +  SG          LI   C + K+
Sbjct: 163 TKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKM 222

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +   L  ++L+ GLVP    F  LI+  C+ +      E+   M++++ +PD  TY  +
Sbjct: 223 DDANGLFDEMLDKGLVPNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTL 282

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I GLCK     +A+ + +++  +G  PD + YTT+I G CK G L  A +    MI + +
Sbjct: 283 IYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 342

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             ++  Y ++I G C+     +A+++ +EML  G    T TY  +I   C  G       
Sbjct: 343 RLDDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSK 402

Query: 396 LFEEMAQKGIFRDVIT 411
           L +EM + G    V++
Sbjct: 403 LLKEMQRDGHVPSVVS 418



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/189 (23%), Positives = 79/189 (41%), Gaps = 30/189 (15%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNP 138
           +   V L++  ++ + S    SPDL++ N L   L +    K A D +D     G  P+ 
Sbjct: 253 KNRRVDLAMEIYKQMLSQ-SLSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDK 311

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I   C+ G +E AF    ++ +                 I++D  D+ +     
Sbjct: 312 ITYTTLIDGCCKEGDLETAFEHRKRMIQEN---------------IRLD--DVAYTA--- 351

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C +G+  +  ++LR++L  GL P+   +  +I+ FC+K +    S+LL 
Sbjct: 352 ------LISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLK 405

Query: 259 TMVARNRAP 267
            M      P
Sbjct: 406 EMQRDGHVP 414


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 153/329 (46%), Gaps = 11/329 (3%)

Query: 106 LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           LV  N   D L EA  F+V           PN  +  + I  LCE+G +EEAF    ++ 
Sbjct: 169 LVLANCRRDDLGEA--FRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMV 226

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVS 216
           E G   S +T+   +     I  TD   K+  ++              LI   C +GK+ 
Sbjct: 227 EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIE 286

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   + R++L+ GL P    FN LI+ +C++       +LL  M   N  P+  TY E++
Sbjct: 287 EANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELM 346

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
            GLC+  K  +A+ +   + + G +PD V Y  ++ G CK G L  A  ++  M   GL 
Sbjct: 347 EGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLE 406

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+ +T+ ++I G C++  LE+A  +   M+ KG     VT+  LI G C  G+  +   L
Sbjct: 407 PDGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFL 466

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           FE M +        T+N  +    K+ K+
Sbjct: 467 FENMVENRCLTTAHTFNCFLDALGKDYKL 495



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 157/338 (46%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P   +  VL  +  +      AM  LD   +    PN ++  + I  LC  G IEEA
Sbjct: 229 GCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEA 288

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQ 207
              F K+ + G+   I T+N+ + G  K       ++L   ++E G           L++
Sbjct: 289 NGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQLL-SVMEKGNCKPNIRTYNELME 347

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   K  + + LLR+V+++GL+P+   +N L+  FC++        + ++M +    P
Sbjct: 348 GLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEP 407

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FT+  +I+GLCK  +  +A  +   + ++G   D V +T +I G CK+G   D   ++
Sbjct: 408 DGFTFTALIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLF 467

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+    L   +T+N  +    +   L EA  +  +M+  G   + VT+  LI G C  
Sbjct: 468 ENMVENRCLTTAHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRA 527

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T  +  + E M Q G   +V TY  +I G C  G++
Sbjct: 528 GETALSLKMLERMKQAGCSPNVYTYTIIINGLCNNGRV 565



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 157/354 (44%), Gaps = 23/354 (6%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
           Q NNV L +RFF+W+     +  DL       D  ++     V+ D      F     ++
Sbjct: 13  QSNNVELGVRFFKWVCRQSSYCYDL-------DGRIQLLGVLVSRDL-----FGVAQKAV 60

Query: 142 ELYIQ-CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
            L IQ C      + +   A   + E+G   S   +++ L+   K++   + + +Y  ++
Sbjct: 61  VLLIQECEDSENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMV 120

Query: 201 ESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             G+         ++ A C +G V        +VL  G   +      L+   C + + G
Sbjct: 121 NEGFVLGGIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLG 180

Query: 252 RVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               +   M       P++ TY  +I+GLC++ +  EA+++  ++ E+G  P T  YT +
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I   C +G    A KM  EM  K  +PN +TY  +I   CR   +EEA  + ++ML  G 
Sbjct: 241 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               +T+N LI G C  G    A+ L   M +     ++ TYN L++G C+  K
Sbjct: 301 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSK 354



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/331 (22%), Positives = 134/331 (40%), Gaps = 44/331 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P   +    I   C+ G +  AF   S +++     +I+T+N  + G  ++ ++   
Sbjct: 299 GLCPGIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKA 358

Query: 193 WKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L   ++++G L         +  FC +G+++  + +   +   GL P+   F  LI  
Sbjct: 359 FLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDG 418

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----- 298
            C+     + + +L +MV +  + D  T+  +I+G CK  K  +   +F ++ E      
Sbjct: 419 LCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTT 478

Query: 299 ------------------------------GYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                                         G VP  V +T +I G C+ G    + KM  
Sbjct: 479 AHTFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLE 538

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G  PN YTY  +I+G C    +EEA+ +   M   G      TY  L+      G
Sbjct: 539 RMKQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAG 598

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R D A+ +   M + G   +   Y+ L+ G+
Sbjct: 599 RLDRAFQIVSTMVKNGCQPNSHIYSALLSGF 629



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 151/340 (44%), Gaps = 15/340 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N+L D   +     +A +    ++S G  P+  +    I  LC+ G +E+A
Sbjct: 369 GLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQA 428

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                 + + G+     T+ + + G  KI +   V  L+ +++E+  L         + A
Sbjct: 429 NGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDA 488

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              D K++E   +L ++++ GLVP       LI   C         ++L  M     +P+
Sbjct: 489 LGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 548

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +INGLC + +  EA  +   +   G  P+   Y  ++    K G L  A ++  
Sbjct: 549 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 608

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK--EMLDKGYGETTVTYNTLIAGLCL 386
            M+  G  PN + Y++++ G+   +    A+ L    ++  +         N L + +  
Sbjct: 609 TMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFR 668

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               D A  + +E+ + G+  + + YN L+ G CKEG+I+
Sbjct: 669 LMDVDHALKIRDEIKKCGVPTEDL-YNFLVVGLCKEGRII 707



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/352 (20%), Positives = 139/352 (39%), Gaps = 64/352 (18%)

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           H   G + D+     LF+++VE R    A  F               ++  L +   + E
Sbjct: 454 HCKIGKAKDVC---FLFENMVENRCLTTAHTF-------------NCFLDALGKDYKLNE 497

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A     K+ + G+  S+ T    + G  +   T L  K+   + ++G          +I 
Sbjct: 498 ANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIIN 557

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             CN+G+V E   +L  +   G+ P +  +  L+    +     R  +++ TMV     P
Sbjct: 558 GLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGCQP 617

Query: 268 DNFTYEEVINGLCKSRKRL-------------------------------------EAYR 290
           ++  Y  +++G   S   +                                      A +
Sbjct: 618 NSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDVDHALK 677

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           + +++K+ G VP   +Y  ++ GLCK G + +A ++  +M+  GL P++   +S+I  YC
Sbjct: 678 IRDEIKKCG-VPTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK-AISSIIEHYC 735

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           +    +      K +LD  +  +  +Y  +I GL   GR  EA  L  ++ +
Sbjct: 736 KTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLVR 787



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/136 (22%), Positives = 69/136 (50%), Gaps = 1/136 (0%)

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
             + + E G+      Y+T++  L K+     A  ++  M+++G +     Y ++++  C
Sbjct: 80  ALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALC 139

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DV 409
           +   ++ A+    ++L  G+G  T    +L+   C      EA+ +FE+M+++   R + 
Sbjct: 140 KNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNS 199

Query: 410 ITYNTLIQGYCKEGKI 425
           +TY+ LI G C+ G++
Sbjct: 200 VTYSILIHGLCEAGRL 215


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/223 (35%), Positives = 115/223 (51%), Gaps = 2/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C   +  E   LLR +   G+  +   +  LI   C+        ELL  M    
Sbjct: 129 VMRGLCASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSG 188

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+   Y  ++ G C+S +  +  +VF D+  RG  PD +M+T +I  LCK G  G A 
Sbjct: 189 VQPNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAA 248

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+   M+ +GL PN  TYN +I+  C+  ++ EA  L KEM DKG     VTYNTLIAGL
Sbjct: 249 KVKDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGL 308

Query: 385 CLHGRTDEAYHLFEEMAQKG--IFRDVITYNTLIQGYCKEGKI 425
                 DEA    EEM Q    +  DV+T+N++I G CK G++
Sbjct: 309 SGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRM 351



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 145/314 (46%), Gaps = 28/314 (8%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           D L +AR+  V M         PN  S    ++ LC S    EA      ++  GV   +
Sbjct: 99  DHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRTGEAVALLRSMQASGVRADV 158

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
            T+                          G LI+  C+  ++    ELL ++   G+ P 
Sbjct: 159 VTY--------------------------GTLIRGLCDASELDAALELLDEMCGSGVQPN 192

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              ++ L+  +C    +  V ++   M  R   PD   +  +I+ LCK  K  +A +V +
Sbjct: 193 VVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKD 252

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
            + +RG  P+ V Y  +I+ LCK G + +A  +  EM  KG+ P+  TYN++I G   + 
Sbjct: 253 MMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVL 312

Query: 354 NLEEAKRLHKEML--DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            ++EA    +EM+  D       VT+N++I GLC  GR  +A  + E MA++G   +++T
Sbjct: 313 EMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVT 372

Query: 412 YNTLIQGYCKEGKI 425
           YN LI G+ +  K+
Sbjct: 373 YNYLIGGFLRVHKV 386



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 17/342 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S  G  PD++    L D L +     +A KV  D +   G  PN  +  + I  LC+ G 
Sbjct: 220 SRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVK-DMMVQRGLEPNVVTYNVLINSLCKEGS 278

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----------- 202
           + EA     ++ + GV   + T+N+ + G   +   D       ++I+            
Sbjct: 279 VREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVVEPDVVTF 338

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C  G++++  ++   + E G +     +N LI  F           L+  +  
Sbjct: 339 NSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNLMDELAI 398

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD+FTY  +ING  K  +   A +    +++RG   +   Y  ++  +C+ G +  
Sbjct: 399 SGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQQGMMER 458

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++ EM  K    +   Y++MIHG C+  +++  K+L ++MLD+G     VTY+ LI 
Sbjct: 459 AMGLFNEM-DKNCGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGLAPDAVTYSMLIN 517

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                G  +EA  + ++M   G   DV  +++LI+GY  EG+
Sbjct: 518 MYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQ 559



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/129 (35%), Positives = 64/129 (49%), Gaps = 5/129 (3%)

Query: 301 VPDTVMYTTVIHGLCKMGW--LGDARKMWFEM---IHKGLLPNEYTYNSMIHGYCRIDNL 355
           V D V Y TV+  LC+ G   L  AR +  +M    H    PN  +Y +++ G C     
Sbjct: 80  VRDAVSYNTVLAALCRRGGDHLRQARSLLVDMSREAHPAARPNAVSYTTVMRGLCASRRT 139

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA  L + M   G     VTY TLI GLC     D A  L +EM   G+  +V+ Y+ L
Sbjct: 140 GEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCL 199

Query: 416 IQGYCKEGK 424
           ++GYC+ G+
Sbjct: 200 LRGYCRSGR 208


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 155/335 (46%), Gaps = 15/335 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD  +   L   L +      A+  LD     G  PN  +  + ++ +C +   E+A  
Sbjct: 140 APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMA 199

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
              +++  G   +I T+N  + G  +  R D   +L + L   G+         L++  C
Sbjct: 200 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLC 259

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              +  +  EL  +++E   +P    F+ LI  FC      R  ++L  M     A +  
Sbjct: 260 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTT 319

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
               VIN +CK  +  +A+++ ND+   G  PDT+ YTTV+ GLC+     DA+++  EM
Sbjct: 320 LCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEM 379

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +     PNE T+N+ I   C+   +E+A  L ++M + G     VTYN L+ G C+ G  
Sbjct: 380 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHI 439

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D A  LF  M  K    + ITY TL+ G C   ++
Sbjct: 440 DSALELFRSMPCK---PNTITYTTLLTGLCNAERL 471



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 140/295 (47%), Gaps = 6/295 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+       I+ LC  G   +A       +  G    +  +N+ + G  +    D  
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 193 WKLYHDL--IESGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            +L   +      Y    LI+  C+ G+V++   LL  +L  G  P    +  L+   C 
Sbjct: 131 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCR 190

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
              F +   +L  M A+   P+  TY  +ING+C+  +  +A  + N L   G+ PDTV 
Sbjct: 191 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVS 250

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YTT++ GLC      D  +++ EM+ K  +PNE T++ +I  +CR   +E A ++ ++M 
Sbjct: 251 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMT 310

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           + G    T   N +I  +C  GR D+A+ L  +M   G   D I+Y T+++G C+
Sbjct: 311 EHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCR 365



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 15/338 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YGF PD VS   L   L  ++ +    +    +      PN  + ++ I+  C  G++E 
Sbjct: 242 YGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVER 301

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQ 207
           A     ++ E G   +    N  +    K  R D  +KL +D+         I    +++
Sbjct: 302 AIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLK 361

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   +  +  ELL +++ +   P    FN  I   C+K    +   L+  M       
Sbjct: 362 GLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTV 421

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  ++NG C       A  +F  +  +   P+T+ YTT++ GLC    L  A ++ 
Sbjct: 422 GVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELV 478

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+     PN  T+N ++  +C+   LEEA  L ++M++ G     +TYNTL+ G+   
Sbjct: 479 AEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKD 538

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +++A  L   +  KG+  DVIT++++I    KE +I
Sbjct: 539 CSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRI 576



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 81/327 (24%), Positives = 137/327 (41%), Gaps = 32/327 (9%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEE 156
           YG +PD +S   +   L  A  +  A + L+        PN  +   +I  LC+ GLIE+
Sbjct: 347 YGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNTFICILCQKGLIEQ 406

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A     ++ E G    + T+N+                          L+  FC  G + 
Sbjct: 407 AIMLIEQMSEHGCTVGVVTYNA--------------------------LVNGFCVQGHID 440

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
              EL R +      P    +  L++  C  +     +EL+  M+  +  P+  T+  ++
Sbjct: 441 SALELFRSM---PCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLV 497

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +  C+     EA  +   + E G  P+ + Y T++ G+ K     DA ++   ++ KG+ 
Sbjct: 498 SFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVSKGVS 557

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+  T++S+I    + D +EEA +L   + D G     V YN ++ GLC     D A   
Sbjct: 558 PDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNAIDF 617

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           F  M   G   +  TY  LI+G   EG
Sbjct: 618 FAYMVSNGCMPNESTYIILIEGLAHEG 644



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/197 (29%), Positives = 86/197 (43%), Gaps = 3/197 (1%)

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           DG  P+     KLI   C +      + +L          D F Y  ++ G C+      
Sbjct: 70  DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 129

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A R+   +      PD   YT +I  LC  G + DA  +  +M+ +G  PN  TY  ++ 
Sbjct: 130 ARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 186

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             CR    E+A  +  EM  KG     VTYN +I G+C  GR D+A  L   +   G   
Sbjct: 187 AMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQP 246

Query: 408 DVITYNTLIQGYCKEGK 424
           D ++Y TL++G C   +
Sbjct: 247 DTVSYTTLLKGLCASKR 263



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  P+ Y    +I   CR     +A R+ +     G       YNTL+AG C +G  D A
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             L   M    +  D  TY  LI+  C  G++ +
Sbjct: 131 RRLIGSMP---VAPDAYTYTPLIRVLCDRGRVAD 161


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 159/333 (47%), Gaps = 25/333 (7%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           H G +P++V+   L  + ++A+   VA +  +     G  PN  +    I   C++G IE
Sbjct: 523 HKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIE 582

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------LIESGYLIQAF 209
           +A   +++++                G I+    D  +KL H+      +I  G L+   
Sbjct: 583 KACQIYARMR----------------GDIESSDMDKYFKLDHNNCEGPNVITYGALVDGL 626

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C   +V E +ELL  +L  G  P    ++ +I  FC+        E+   M  R  +P+ 
Sbjct: 627 CKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNL 686

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +TY   I+ L K  +     +V + + E    P+ V+YT ++ GLCK+G   +A K+  +
Sbjct: 687 YTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLK 746

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KG  PN  TY +MI G+ +   +E+   L ++M  KG     +TY  LI   C +G 
Sbjct: 747 MEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGL 806

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            DEAY L +EM Q    + ++++  +I+G+ +E
Sbjct: 807 LDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQE 839



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 157/331 (47%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +AFK+  + +   GF P+ ++    I  LC++  +E+AF  F ++K  G+  S+ T+   
Sbjct: 443 QAFKIICEMM-GKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTIL 501

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K        K + +++  G          LI A+    ++    EL   +L +G 
Sbjct: 502 IDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGC 561

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVA----------------RNRAPDNFTYEE 274
            P    +  LI   C+     +  ++   M                      P+  TY  
Sbjct: 562 KPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGA 621

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLCK+ +  EA+ + + +   G  P+ ++Y  VI G CK+G L DA++++ +M  +G
Sbjct: 622 LVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERG 681

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN YTY+S I    + + L+   ++  +ML+       V Y  ++ GLC  G+TDEAY
Sbjct: 682 YSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAY 741

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L  +M +KG   +V+TY  +I G+ K GKI
Sbjct: 742 KLMLKMEEKGCNPNVVTYTAMIDGFGKSGKI 772



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 162/393 (41%), Gaps = 67/393 (17%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLD-STGFSPNPNSLELYIQCLCESGLIEEAF 158
           Y F  D  + +    SL +    + A D +D +  F P+       +  LCE+ L EEA 
Sbjct: 240 YAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFVPDTVFYNRMVSGLCEASLFEEAM 299

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
               +++      ++ T+   L GC++  +     ++   +I  G          LI A+
Sbjct: 300 DILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLIHAY 359

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK--------------------- 248
           C     S  Y+L +++++ G  P    +N  I   C  +                     
Sbjct: 360 CKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDL 419

Query: 249 ----------NFGR----------VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
                     NF R            +++  M+ +   PD+ TY +VI  LC + K  +A
Sbjct: 420 GVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKA 479

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           + +F ++K  G VP    YT +I   CK G +  ARK + EM+HKG  PN  TY ++IH 
Sbjct: 480 FSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHA 539

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA------- 401
           Y +   +  A  L + ML +G     VTY  LI G C  G+ ++A  ++  M        
Sbjct: 540 YLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYARMRGDIESSD 599

Query: 402 QKGIFR---------DVITYNTLIQGYCKEGKI 425
               F+         +VITY  L+ G CK  ++
Sbjct: 600 MDKYFKLDHNNCEGPNVITYGALVDGLCKANRV 632



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 96/420 (22%), Positives = 153/420 (36%), Gaps = 94/420 (22%)

Query: 68  FNFNDPLFFREFLKQQNNVL------------LSIRFFQWLHSHYGFSP---------DL 106
           FN     FFR+F  Q N+ L            L ++FF W     G+S          DL
Sbjct: 89  FNIETHQFFRQFRNQLNDSLVVEVMNNVKNPELCVKFFLWAGRQIGYSHTPQVFDKLLDL 148

Query: 107 VSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           + CNV  D  V     K  M+  D          L   ++  C +G    A     +LK+
Sbjct: 149 LGCNVNADDRV---PLKFLMEIKDDD-HELLRRLLNFLVRKCCRNGWWNMALEELGRLKD 204

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVL 226
            G   S  T+N+                          LIQ F    K+   Y + R++L
Sbjct: 205 FGYKPSQTTYNA--------------------------LIQVFLRADKLDTAYLVKREML 238

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
               V +    +      C+        +L+    A +  PD   Y  +++GLC++    
Sbjct: 239 SYAFVMDRYTLSCFAYSLCKGGKCREAFDLIDE--AEDFVPDTVFYNRMVSGLCEASLFE 296

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA  + + ++    +P+ V Y  ++ G  + G LG  +++   MI +G  PN   +NS+I
Sbjct: 297 EAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPNREIFNSLI 356

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG----------------------- 383
           H YC+  +   A +L K+M+  G     + YN  I                         
Sbjct: 357 HAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEM 416

Query: 384 ------------------LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                             LC  G+ D+A+ +  EM  KG   D  TY+ +I   C   K+
Sbjct: 417 LDLGVVLNKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKV 476



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 156/353 (44%), Gaps = 27/353 (7%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           ++F+  H++    P++++   L D L +A   K A + LD+    G  PN    +  I  
Sbjct: 602 KYFKLDHNNCE-GPNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDG 660

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
            C+ G +++A   F+K+ E G   ++ T++S +    K +R DLV K+   ++E+     
Sbjct: 661 FCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPN 720

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 ++   C  GK  E Y+L+ ++ E G  P    +  +I  F +     +  EL  
Sbjct: 721 VVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFR 780

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG----- 313
            M ++  AP+  TY  +IN  C +    EAY++ +++K+  +    + +  +I G     
Sbjct: 781 DMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQEF 840

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           +  +G L        E+     +P +  Y  +I  Y +   LE A  L +E+        
Sbjct: 841 ITSIGLLD-------ELSENESVPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAV 893

Query: 374 T--VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +    Y +LI  L    + D+A  L+  M  K +  ++     LI+G  K  K
Sbjct: 894 SNKYLYASLIENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDK 946



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 63/309 (20%), Positives = 126/309 (40%), Gaps = 24/309 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           S  G+SP+L + +   D L +     + +  L        +PN       +  LC+ G  
Sbjct: 678 SERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKT 737

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           +EA+    K++E G   ++ T+ + + G  K  + +   +L+ D+   G          L
Sbjct: 738 DEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVL 797

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C++G + E Y+LL ++ +        +  K+I  F ++  F     LL  +     
Sbjct: 798 INHCCSNGLLDEAYKLLDEMKQTYWPKHILSHRKIIEGFSQE--FITSIGLLDELSENES 855

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--YVPDTVMYTTVIHGLCKMGWLGDA 323
            P +  Y  +I+   K+ +   A  +  ++       V +  +Y ++I  L     +  A
Sbjct: 856 VPVDSLYRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKA 915

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML--------DKGYGETTV 375
            +++  MI K ++P       +I G  ++D  +EA +L   +         +K  G T  
Sbjct: 916 LELYASMISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSICQMDIHWLQEKATGRTEE 975

Query: 376 TYNTLIAGL 384
               +IA +
Sbjct: 976 MVKLVIAAM 984


>gi|357438845|ref|XP_003589699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478747|gb|AES59950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 806

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 176/362 (48%), Gaps = 17/362 (4%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN 137
           + L+Q+++++ S+ +F+ L +   F    ++   + D L            L        
Sbjct: 46  KVLRQEHDIVSSLEYFKSLSNSGTFKHTHLTYETMIDKLGRNNEMDGVSYLLQQMKLENV 105

Query: 138 PNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           P S EL+   I+C   S L E+    F +++E G   S+K +N  L   +  +   ++  
Sbjct: 106 PCSQELFQFVIKCYRRSNLGEQGLKMFYRIREFGCEPSVKIYNLVLDALLSQNLFKMINA 165

Query: 195 LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           LY+++   G          L++A C +GKV    +LL ++   G  P++ ++  +IS  C
Sbjct: 166 LYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCDPDDVSYTTVISSMC 225

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +  +  +  EL     A    P    Y  +I+G+CK  +  EA+ + N++ +RG  P+ +
Sbjct: 226 KLGDVDKAREL-----AMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVI 280

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y+TVI  L  MG +  +  ++  M  +G  PN  T+ S+I G+     + +A  L   M
Sbjct: 281 SYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLM 340

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +G     V YNTLI GLC  G  DEA  ++ +M +  I  +V TY+T+I G+ K G +
Sbjct: 341 IREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDL 400

Query: 426 VN 427
           V+
Sbjct: 401 VS 402



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 149/336 (44%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
           F P +   N L   + +   FK A D ++     G  PN  S    I CL + G +E + 
Sbjct: 240 FEPVVPVYNALIHGVCKECRFKEAFDLMNEMVDRGVDPNVISYSTVISCLSDMGNVELSL 299

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F ++   G   +++T+ S + G     R      L++ +I  G          LI   
Sbjct: 300 AVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGL 359

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+DG + E   +  Q+ +D + P  T ++ +I  F +  +     E  + M+     P+ 
Sbjct: 360 CSDGNMDEAISVWNQMEKDSIRPNVTTYSTIIYGFAKSGDLVSACETWNKMINCGCRPNV 419

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
             Y  +++ LC+     +A+ + +++   G  P  + +   I GLC+ G +  A  +  +
Sbjct: 420 VVYTCMVDVLCQMSMFDQAFDLIDNMISDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQ 479

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M     LPN  TYN ++ G  R +   EA  L +E+ ++      VTYNT++ G   +G 
Sbjct: 480 MEKYECLPNIRTYNELLDGLFRANAFREACGLIRELEERKVEFDCVTYNTIMYGFSFNGM 539

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +   L  +M   GI  D IT NT +  YCK GK+
Sbjct: 540 HQQVLQLLGKMLVNGIKLDTITVNTTVNAYCKLGKV 575



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 171/379 (45%), Gaps = 17/379 (4%)

Query: 58  EQTLLSDIPS----FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLF 113
           +Q  L ++P     F F    + R  L +Q      ++ F  +   +G  P +   N++ 
Sbjct: 98  QQMKLENVPCSQELFQFVIKCYRRSNLGEQ-----GLKMFYRIR-EFGCEPSVKIYNLVL 151

Query: 114 DSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170
           D+L+    FK+       + S G  PN  +  + ++ LC++G ++ A     ++   G  
Sbjct: 152 DALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCD 211

Query: 171 GSIKTWNSALLGCIKIDRTD----LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVL 226
               ++ + +    K+   D    L  K    +     LI   C + +  E ++L+ +++
Sbjct: 212 PDDVSYTTVISSMCKLGDVDKARELAMKFEPVVPVYNALIHGVCKECRFKEAFDLMNEMV 271

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           + G+ P   +++ +IS   +  N      +   M  R   P+  T+  +I G     +  
Sbjct: 272 DRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFVRGRVG 331

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  ++N +   G  P+ V Y T+IHGLC  G + +A  +W +M    + PN  TY+++I
Sbjct: 332 DAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTTYSTII 391

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           +G+ +  +L  A     +M++ G     V Y  ++  LC     D+A+ L + M   G  
Sbjct: 392 YGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMISDGCP 451

Query: 407 RDVITYNTLIQGYCKEGKI 425
             VIT+N  I+G C+ G++
Sbjct: 452 PTVITFNNFIKGLCRAGRV 470



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 156/352 (44%), Gaps = 23/352 (6%)

Query: 85  NVLLSIRFFQWLHSHY------GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFS 135
           + LLS   F+ +++ Y      G  P++ + NVL  +L +      A   L    + G  
Sbjct: 152 DALLSQNLFKMINALYNNMKSEGLEPNVFTYNVLLKALCQNGKVDGACKLLVEMSNKGCD 211

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  S    I  +C+ G +++A     K + +     +  +N+ + G  K  R    + L
Sbjct: 212 PDDVSYTTVISSMCKLGDVDKARELAMKFEPV-----VPVYNALIHGVCKECRFKEAFDL 266

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            +++++ G          +I    + G V     +  ++   G  P    F  LI  F  
Sbjct: 267 MNEMVDRGVDPNVISYSTVISCLSDMGNVELSLAVFGRMFVRGCRPNVQTFTSLIKGFFV 326

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +   G    L + M+    +P+   Y  +I+GLC      EA  V+N +++    P+   
Sbjct: 327 RGRVGDAVGLWNLMIREGVSPNVVAYNTLIHGLCSDGNMDEAISVWNQMEKDSIRPNVTT 386

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T+I+G  K G L  A + W +MI+ G  PN   Y  M+   C++   ++A  L   M+
Sbjct: 387 YSTIIYGFAKSGDLVSACETWNKMINCGCRPNVVVYTCMVDVLCQMSMFDQAFDLIDNMI 446

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             G   T +T+N  I GLC  GR + A ++ ++M +     ++ TYN L+ G
Sbjct: 447 SDGCPPTVITFNNFIKGLCRAGRVEWAMNVLDQMEKYECLPNIRTYNELLDG 498


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 89/287 (31%), Positives = 146/287 (50%), Gaps = 9/287 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY     
Sbjct: 78  ESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLY 137

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+ +F  +G++     +   + + GL P   +FN L++ + +  +      L + M
Sbjct: 138 FFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAM 197

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            A    PD +TY  +INGLCK  K  +A  +F ++ + G VP+ V +TT+I G CK G +
Sbjct: 198 QASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRV 257

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +TY TL
Sbjct: 258 XLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTL 317

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           I G C  G  + A    + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 318 IDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + + G+  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
                 MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 XXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|296087527|emb|CBI34116.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 166/349 (47%), Gaps = 32/349 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P ++SCN L + L+E     +A+     L   G +PN  +  ++I+ LC  G  EEA
Sbjct: 187 GFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEA 246

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F +++E GV  +  T ++ + G     R+DL ++    L  + +         +I+ 
Sbjct: 247 VDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRG 306

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP- 267
           FC++ K+ E  ++   ++ +G+ P+   +  LI  +C+  N  +   L + MV+      
Sbjct: 307 FCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTN 366

Query: 268 ---------------DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
                          D   Y  V++ LCK  K  EA  + N++K R    D V YTT+I 
Sbjct: 367 LVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIA 426

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C  G L DA+ M+ EM  +G+ P+  TYN ++ G+ R    +EA  L   +  +G   
Sbjct: 427 GYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKP 486

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            + T+N +I GLC+ G+  EA      +  K +      Y+ ++ GYCK
Sbjct: 487 NSATHNRIIEGLCMAGKVKEAEAFLNTLEDKCLE----NYSAMVDGYCK 531



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 138/345 (40%), Gaps = 60/345 (17%)

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL- 199
           L++ ++     G+ +EA  A  + K  G    I + N  +   I+  + D+   +Y  L 
Sbjct: 160 LDMLVKAYVRVGMFDEAIDALFQTKRRGFVPHIMSCNFLMNRLIEHGKIDMAVAIYRHLK 219

Query: 200 --------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                      G  I+A C  G   E  ++ R++ E G+ P     +  I   C  K   
Sbjct: 220 RLGLNPNDYTYGIFIKALCRKGNFEEAVDVFREMEEAGVNPNAVTCSTYIEGLCSHKRSD 279

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              E L  + A N   D F Y  VI G C   K  EA  VF D+   G  PD  +Y  +I
Sbjct: 280 LGYEALRALRAANWPIDTFAYTAVIRGFCSEMKLKEAEDVFIDMVNEGIAPDGYIYGALI 339

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPN----------------EYTYNSMIHGYCRIDNL 355
           H  CK G L  A  +  +M+  G+  N                E  YN ++   C++  +
Sbjct: 340 HAYCKAGNLLQAVALHNDMVSNGIKTNLVDQFKEFRDSGIFLDEVLYNIVVDALCKLGKV 399

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           EEA  L  EM  +      V Y TLIAG CL G+  +A ++FEEM ++GI  D++TYN L
Sbjct: 400 EEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNIL 459

Query: 416 -----------------------------------IQGYCKEGKI 425
                                              I+G C  GK+
Sbjct: 460 VGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKV 504



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 112/245 (45%), Gaps = 16/245 (6%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++   +L+      GK+     + R +   GL P +  +   I   C K NF    ++  
Sbjct: 192 IMSCNFLMNRLIEHGKIDMAVAIYRHLKRLGLNPNDYTYGIFIKALCRKGNFEEAVDVFR 251

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M      P+  T    I GLC  ++    Y     L+   +  DT  YT VI G C   
Sbjct: 252 EMEEAGVNPNAVTCSTYIEGLCSHKRSDLGYEALRALRAANWPIDTFAYTAVIRGFCSEM 311

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML------------ 366
            L +A  ++ +M+++G+ P+ Y Y ++IH YC+  NL +A  LH +M+            
Sbjct: 312 KLKEAEDVFIDMVNEGIAPDGYIYGALIHAYCKAGNLLQAVALHNDMVSNGIKTNLVDQF 371

Query: 367 ----DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
               D G     V YN ++  LC  G+ +EA  L  EM  + +  DV+ Y TLI GYC +
Sbjct: 372 KEFRDSGIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQ 431

Query: 423 GKIVN 427
           GK+V+
Sbjct: 432 GKLVD 436



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 165/336 (49%), Gaps = 28/336 (8%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           D+VS  +  + + + + F+ +  FLD   ++       + +  LC+ G +EEA    +++
Sbjct: 357 DMVSNGIKTNLVDQFKEFRDSGIFLDEVLYN-------IVVDALCKLGKVEEAVELLNEM 409

Query: 165 KEMGVFGSIKTWNSALLG-CIK---IDRTDLVWKLYH-----DLIESGYLIQAFCNDGKV 215
           K   +   +  + + + G C++   +D  ++  ++       D++    L+  F  +G  
Sbjct: 410 KGRRMSLDVVHYTTLIAGYCLQGKLVDAKNMFEEMKERGIEPDIVTYNILVGGFSRNGLK 469

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  ELL  +   GL P +   N++I   C           L+T+   ++  +N  Y  +
Sbjct: 470 KEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEAEAFLNTL--EDKCLEN--YSAM 525

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYV--------PDTVMYTTVIHGLCKMGWLGDARKMW 327
           ++G CK+    +AY +F+ L ++G +        P+ +MY  +I   C+ G +  A+ ++
Sbjct: 526 VDGYCKANFTRKAYELFSRLSKQGILRMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVF 585

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             ++ +G+ P+  TY  MI+GYCR++ L EA+ +  +M ++G     +TY  ++ G    
Sbjct: 586 DMLVERGITPDVITYTMMINGYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKT 645

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               +A +L++EM  +G+  D++TY  L+ G C  G
Sbjct: 646 NNLQDAINLYDEMIARGLQPDIVTYTALLPGKCNFG 681



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 119/253 (47%), Gaps = 25/253 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N+L          K A++ LD   + G  PN  +    I+ LC +G ++EA
Sbjct: 448 GIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEGLCMAGKVKEA 507

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               + L++      ++ +++ + G  K + T   ++L+  L + G L            
Sbjct: 508 EAFLNTLED----KCLENYSAMVDGYCKANFTRKAYELFSRLSKQGIL------------ 551

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                 ++L   + P    + KLI  FC   +  R   +   +V R   PD  TY  +IN
Sbjct: 552 ------RMLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMIN 605

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C+     EA  +FND+KERG  PD + YT V+ G  K   L DA  ++ EMI +GL P
Sbjct: 606 GYCRVNCLREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQP 665

Query: 338 NEYTYNSMIHGYC 350
           +  TY +++ G C
Sbjct: 666 DIVTYTALLPGKC 678



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 146/309 (47%), Gaps = 26/309 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G   D V  N++ D+L +    + A++ L+       S +       I   C  G + +A
Sbjct: 378 GIFLDEVLYNIVVDALCKLGKVEEAVELLNEMKGRRMSLDVVHYTTLIAGYCLQGKLVDA 437

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG----CIKIDRTDLV-----WKLYHDLIESGYLIQA 208
              F ++KE G+   I T+N  + G     +K +  +L+       L  +      +I+ 
Sbjct: 438 KNMFEEMKERGIEPDIVTYNILVGGFSRNGLKKEALELLDCIGTQGLKPNSATHNRIIEG 497

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT--------- 259
            C  GKV E  E     LED  + EN  ++ ++  +C K NF R +  L +         
Sbjct: 498 LCMAGKVKEA-EAFLNTLEDKCL-EN--YSAMVDGYC-KANFTRKAYELFSRLSKQGILR 552

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+A +  P+   Y ++I   C+      A  VF+ L ERG  PD + YT +I+G C++  
Sbjct: 553 MLALDVEPNQIMYGKLIGAFCRDGDMKRAQLVFDMLVERGITPDVITYTMMINGYCRVNC 612

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L +AR ++ +M  +G+ P+  TY  ++ G+ + +NL++A  L+ EM+ +G     VTY  
Sbjct: 613 LREARDIFNDMKERGIKPDVITYTVVLDGHSKTNNLQDAINLYDEMIARGLQPDIVTYTA 672

Query: 380 LIAGLCLHG 388
           L+ G C  G
Sbjct: 673 LLPGKCNFG 681


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 168/356 (47%), Gaps = 28/356 (7%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCE 150
           + +   +G + D +  N L + LV+    K+  +    + S G  P+ ++  + I+ LC+
Sbjct: 146 EVMEVEFGLALDTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCK 205

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------- 203
           +  I  A     ++   G+    KT+ + + G I+    D  +++   ++++G       
Sbjct: 206 AHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVT 265

Query: 204 --YLIQAFCNDGKVSEGY----------------ELLRQVLEDGLVPENTAFNKLISRFC 245
              L+  FC +G++ E                  EL  ++   G  P+   +N LI   C
Sbjct: 266 VNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLC 325

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
            +        LL  M     A +  TY  +I+G CK++K  EA  +F+ ++ +G   ++V
Sbjct: 326 YRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSV 385

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T+I GLCK   + +A ++  +MI +GL P+++TYNSM+  +CR  ++++A  + + M
Sbjct: 386 TYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTM 445

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              G     VTY TLI GLC  GR + A  L   +  KG+      YN +IQ   K
Sbjct: 446 TSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFK 501



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 165/373 (44%), Gaps = 34/373 (9%)

Query: 85  NVLLS---IRFFQWLHSHY---GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFS 135
           NVL+    ++  + +HS     G  PD+ + N+L  +L +A   + A   M+ + S G  
Sbjct: 166 NVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLV 225

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD----- 190
           P+  +    +Q   E G ++ AF    ++ + G   +  T N  + G  K  R +     
Sbjct: 226 PDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSF 285

Query: 191 -----------LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
                      +  +LY+++   G          LI + C  GK+ E   LLR++   G 
Sbjct: 286 IDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGC 345

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                 +N LI  FC+ K      E+   M  +  + ++ TY  +I+GLCKSR+  EA +
Sbjct: 346 ARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQ 405

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           + + +   G  PD   Y +++   C+ G +  A  +   M   G  P+  TY ++I G C
Sbjct: 406 LMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLC 465

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +E A RL + +  KG   T   YN +I  L    RT EA  LF EM +KG   D  
Sbjct: 466 KAGRVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAF 525

Query: 411 TYNTLIQGYCKEG 423
           TY  + +G    G
Sbjct: 526 TYKIVFRGLSNSG 538



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 170/391 (43%), Gaps = 36/391 (9%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           S NF  P    + L++QN+   ++R   W      F P+      +   L +  +F    
Sbjct: 49  SSNFT-PAQLLDTLRRQNDETAALRLLSWASKQPNFRPNSSIYEEILRKLGKVGSFNSMK 107

Query: 127 DFL-DSTGF--SPNPNSLELYIQCLCESGLIEEAFCAFSKLK-EMGVFGSIKTWNSALLG 182
           D L +  G     +   L ++I    +  L EE  C    ++ E G+      +N  L  
Sbjct: 108 DILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCIVEVMEVEFGLALDTLLYNFLLNV 167

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
            +  ++  LV  ++  ++  G          LI+A C   ++     ++ ++   GLVP+
Sbjct: 168 LVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPD 227

Query: 234 NTAFNKLISRFCEKKNFG---RVSELL----------------HTMVARNRAPDNFTYEE 274
              F  L+  F E+ N     RV E +                H      R  +  ++  
Sbjct: 228 EKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSF-- 285

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
            I+ +    K   A  ++N++K +G  PD   Y  +I  LC  G L +A  +  EM   G
Sbjct: 286 -IDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG 344

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              N  TYN++I G+C+   +EEA+ +  +M  +G    +VTYNTLI GLC   R  EA 
Sbjct: 345 CARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAA 404

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L ++M  +G+  D  TYN+++  +C+EG I
Sbjct: 405 QLMDQMIMEGLKPDKFTYNSMLTYFCREGDI 435



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 73/303 (24%), Positives = 139/303 (45%), Gaps = 12/303 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + + G  P+  +  + I  LC  G ++EA     +++  G   ++ T+N+ + G  K  +
Sbjct: 305 MKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNKK 364

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            +   +++  +   G          LI   C   +V E  +L+ Q++ +GL P+   +N 
Sbjct: 365 IEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNS 424

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +++ FC + +  + ++++ TM +    PD  TY  +I GLCK+ +   A R+   ++ +G
Sbjct: 425 MLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKG 484

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEA 358
            V     Y  VI  L K     +A +++ EM  KG  P+ +TY  +  G       + EA
Sbjct: 485 MVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVFRGLSNSGGPIGEA 544

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
                EM++KG+     ++  L  GLC     D    L + + +K  F        +I+G
Sbjct: 545 VDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKLVDLVMEKANFSQ--NEVVMIRG 602

Query: 419 YCK 421
           + K
Sbjct: 603 FLK 605


>gi|296081012|emb|CBI18516.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 156/322 (48%), Gaps = 32/322 (9%)

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
           P+  +L I+   + G+I+ A   F  +  +G   S+ T N  L   +K  RT+LVW L+ 
Sbjct: 163 PSVFDLLIRVYLKEGMIDYAVETFELVGLVGFKPSVYTCNMILASMVKDKRTELVWSLFR 222

Query: 198 DLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           ++ + G          LI   C +G + +   LL+Q+ E+G VP    +N L++ +C+K 
Sbjct: 223 EMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKG 282

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
            +    EL+  M+ +    D  TY   I+ LC + +  +AY +   +++    P+ V Y 
Sbjct: 283 RYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYN 342

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL--HKE-- 364
           T+I+G  K G +G A +++ EM    L PN  TYN++I G+C + + EEA RL  H E  
Sbjct: 343 TLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEALRLLDHMEAA 402

Query: 365 -------------------MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
                              M   G+G    T N L++ LC  G+  EA      M++ G+
Sbjct: 403 GLRLNEHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGL 462

Query: 406 FRDVITYNTLIQGYCKEGKIVN 427
             + ITY+ +I GY   G  +N
Sbjct: 463 VPNSITYDCIINGYGSIGDPLN 484



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 111/436 (25%), Positives = 188/436 (43%), Gaps = 75/436 (17%)

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
           L + IPS  F+  L  R +LK+   +  ++  F+ L    GF P + +CN++  S+V+ +
Sbjct: 158 LCNSIPSV-FD--LLIRVYLKE-GMIDYAVETFE-LVGLVGFKPSVYTCNMILASMVKDK 212

Query: 121 AFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
             ++       +   G  PN  +  + I  LC  G +++A     +++E G   +I T+N
Sbjct: 213 RTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYN 272

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLED 228
           + L    K  R     +L   +I  G           I   C + + ++ Y LL+++ ++
Sbjct: 273 TLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKE 332

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
            + P    +N LI+ F ++   G  +++ + M   + +P+  TY  +I G C      EA
Sbjct: 333 MISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEA 392

Query: 289 YRVFND-------LKERGYVPDTVMYTTVI----HG------------LCKMGWLGDARK 325
            R+ +        L E G V + +    V+    HG            LC+ G LG+A K
Sbjct: 393 LRLLDHMEAAGLRLNEHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEK 452

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGY-----------------------------------C 350
               M   GL+PN  TY+ +I+GY                                   C
Sbjct: 453 FLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLC 512

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +  NL EAK+    +        +V YNTL+A  C  G   EA  LF++M Q  +  D  
Sbjct: 513 KGGNLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSY 572

Query: 411 TYNTLIQGYCKEGKIV 426
           TY++L+ G C++GK V
Sbjct: 573 TYSSLLTGLCRKGKAV 588



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 150/340 (44%), Gaps = 29/340 (8%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEAF 158
            SP+ V+ N L +  V+     VA    +       SPN  +    I   C  G  EEA 
Sbjct: 334 ISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCHVGDFEEAL 393

Query: 159 -------CAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC 210
                   A  +L E G V  ++K +  A++ C              D      L+ + C
Sbjct: 394 RLLDHMEAAGLRLNEHGNVTEAMKVY--AVMNCNGHGA---------DHFTCNVLVSSLC 442

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            DGK+ E  + L  +   GLVP +  ++ +I+ +    +          M+   + P  F
Sbjct: 443 RDGKLGEAEKFLCHMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFF 502

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMW 327
           TY  ++ GLCK    +EA +  N L    Y+P   D+VMY T++   CK G L +A  ++
Sbjct: 503 TYGSLLKGLCKGGNLVEAKKFLNRLH---YIPGAVDSVMYNTLLAETCKSGNLHEAVALF 559

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCL 386
            +M+   +LP+ YTY+S++ G CR      A  L    + +G      V Y  L+ GL  
Sbjct: 560 DKMVQNNVLPDSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSK 619

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            G    A++ FEEM +KG   D + +N +I    + G+++
Sbjct: 620 AGHPKAAFYFFEEMMKKGTCPDTVAFNAIIDSCSRRGQMM 659



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 74/329 (22%), Positives = 133/329 (40%), Gaps = 52/329 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N + DS         A DF  +    G  PN  +  + +    +   +   
Sbjct: 637 GTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRY 696

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              +S +   G+F    T++S +LG  K    DL  KL   +I              + E
Sbjct: 697 LSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMI--------------MEE 742

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +L ++LE+G++P++                                     Y  +IN
Sbjct: 743 STVVLHEMLENGVIPKHA-----------------------------------QYITLIN 767

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G+C+      A+++ ++++  G+    V  + ++ GL   G   DA  +   M+   LLP
Sbjct: 768 GMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLP 827

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
              T+ +++H +CR   + EA +L   M   G     V YN LI G+C +G +  A+ L+
Sbjct: 828 TIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELY 887

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           EEM  + +  ++ TY  L+        ++
Sbjct: 888 EEMRHRDLCPNITTYAVLVDAISAANNLI 916



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 13/180 (7%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA----LLGCIKIDR 188
           G  P        I  +C  G I+ AF    +++ +G FGS +   SA    LL C K + 
Sbjct: 754 GVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALG-FGSHEVAESAMVRGLLHCGKTED 812

Query: 189 TDLV------WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLI 241
             LV       +L   +     L+  FC D K++E  + L+ V+E  GL  +  A+N LI
Sbjct: 813 AMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALK-LKGVMELCGLKLDVVAYNVLI 871

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C   +     EL   M  R+  P+  TY  +++ +  +   ++  ++  DL+ERG +
Sbjct: 872 MGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERGLI 931



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/262 (18%), Positives = 101/262 (38%), Gaps = 26/262 (9%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGL--- 153
           +G  P+L + N+L     + +A    +    +    G  P+  +    I  L +SG+   
Sbjct: 671 WGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDL 730

Query: 154 ---------IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL--------- 195
                    +EE+     ++ E GV      + + + G  ++      +KL         
Sbjct: 731 GVKLLGKMIMEESTVVLHEMLENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGF 790

Query: 196 -YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
             H++ ES  +++   + GK  +   +L  +L   L+P    F  L+ RFC         
Sbjct: 791 GSHEVAESA-MVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEAL 849

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +L   M       D   Y  +I G+C +     A+ ++ +++ R   P+   Y  ++  +
Sbjct: 850 KLKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAI 909

Query: 315 CKMGWLGDARKMWFEMIHKGLL 336
                L    K+  ++  +GL+
Sbjct: 910 SAANNLIQGEKLLTDLQERGLI 931


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L + L    +F+ +   M  ++ +G++P   +    +   C+ G  + A   
Sbjct: 191 PDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
              +K  GV   + T+N  +    + +R    + L  D+         +    LI  F N
Sbjct: 251 LDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSN 310

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKV    +LL ++L  GL P +  FN LI     + NF    ++ + M A+   P   +
Sbjct: 311 EGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVS 370

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++GLCK+ +   A   +  +K  G     + YT +I GLCK G+L +A  +  EM 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMS 430

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P+  TY+++I+G+C++   + AK +   +   G     + Y+TLI   C  G   
Sbjct: 431 KDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           EA  ++E M  +G  RD  T+N L+   CK GK+ 
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVA 525



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 162/357 (45%), Gaps = 13/357 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
            +  VL++ +    + S +G SP+ V+ N L D  +    FK A+     +++ G +P+ 
Sbjct: 310 NEGKVLIASQLLNEMLS-FGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSE 368

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S  + +  LC++   + A   + ++K  GV     T+   + G  K    D    L ++
Sbjct: 369 VSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNE 428

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           + + G          LI  FC  G+     E++ ++   GL P    ++ LI   C    
Sbjct: 429 MSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGC 488

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                 +   M+      D+FT+  ++  LCK+ K  EA      +   G +P+TV +  
Sbjct: 489 LKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDC 548

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I+G    G    A  ++ EM   G  P  +TY S++ G C+  +L EA++  K +    
Sbjct: 549 LINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVP 608

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               TV YNTL+  +C  G   +A  LF EM Q+ I  D  TY +LI G C++GK V
Sbjct: 609 AAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTV 665



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 97/369 (26%), Positives = 167/369 (45%), Gaps = 36/369 (9%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDS--LVEARAFKVAMDFLDSTGF----------- 134
           L+++F +W+    G   D +   V   +  LV AR +  A   L                
Sbjct: 52  LALKFLKWVVKQPGLETDHIVQLVCITTHILVRARMYDPARHILKELSLMSGKSSFVFGA 111

Query: 135 --------SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLGC 183
                   + NP+  ++ I+     G+I+++   F   + MG++G   S+ T N+ L   
Sbjct: 112 LMTTYRLCNSNPSVYDILIRVYLREGMIQDSLEIF---RLMGLYGFNPSVYTCNAILGSV 168

Query: 184 IKIDRTDLVW---------KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           +K      VW         K+  D+     LI   C +G   +   L++++ + G  P  
Sbjct: 169 VKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTI 228

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             +N ++  +C+K  F    ELL  M ++    D  TY  +I+ LC+S +  + Y +  D
Sbjct: 229 VTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRD 288

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +++R   P+ V Y T+I+G    G +  A ++  EM+  GL PN  T+N++I G+    N
Sbjct: 289 MRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGN 348

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            +EA ++   M  KG   + V+Y  L+ GLC +   D A   +  M + G+    ITY  
Sbjct: 349 FKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTG 408

Query: 415 LIQGYCKEG 423
           +I G CK G
Sbjct: 409 MIDGLCKNG 417



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 146/339 (43%), Gaps = 12/339 (3%)

Query: 92   FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCL 148
            +F+    + G +PD+V+ N + D        +   D L   G     PN  +  + +   
Sbjct: 705  YFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGY 764

Query: 149  CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
             +   +  +F  +  +   G+     T +S +LG  + +  ++  K+    I  G     
Sbjct: 765  SKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDR 824

Query: 205  -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 LI   C +G+++  ++L++ +   G+  +    + ++S       F     +LH 
Sbjct: 825  YTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHE 884

Query: 260  MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
            M  +  +P++  Y  +INGLC+      A+ V  ++      P  V  + ++  L K G 
Sbjct: 885  MSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGK 944

Query: 320  LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              +A  +   M+   L+P   ++ +++H  C+  N+ EA  L   M + G     V+YN 
Sbjct: 945  ADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNV 1004

Query: 380  LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            LI GLC  G    A+ L+EEM   G   +  TY  LI+G
Sbjct: 1005 LITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRG 1043



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/359 (22%), Positives = 158/359 (44%), Gaps = 12/359 (3%)

Query: 80   LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
            L ++   +++I F +   +     P+ V      D + +A  +K  + F   +D+ G +P
Sbjct: 658  LCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTP 717

Query: 137  NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
            +  +    I      G IE+      ++       ++ T+N  L G  K       + LY
Sbjct: 718  DIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLY 777

Query: 197  HDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
              +I +G L         +   C    +  G ++L+  +  G+  +   FN LIS+ C  
Sbjct: 778  RSIILNGILPDKLTCHSLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCAN 837

Query: 248  KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                   +L+  M +   + D  T + +++ L ++ +  E+  V +++ ++G  P++  Y
Sbjct: 838  GEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKY 897

Query: 308  TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
              +I+GLC++G +  A  +  EMI   + P     ++M+    +    +EA  L + ML 
Sbjct: 898  IGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEATLLLRFMLK 957

Query: 368  KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                 T  ++ TL+   C +G   EA  L   M+  G+  D+++YN LI G C +G + 
Sbjct: 958  MKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMA 1016



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 47/160 (29%), Positives = 77/160 (48%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P  +T   ++  + KS + +  +    ++ +R   PD   +  +I+ LC  G    +  +
Sbjct: 156 PSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYL 215

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             +M   G  P   TYN+++H YC+    + A  L   M  KG      TYN LI  LC 
Sbjct: 216 MQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCR 275

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             R  + Y L  +M ++ I  + +TYNTLI G+  EGK++
Sbjct: 276 SNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/338 (20%), Positives = 136/338 (40%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G  P   +   L   L +    + A  FL S    P      +Y   +  +C+SG + +A
Sbjct: 573 GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKA 632

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQ 207
              F ++ +  +     T+ S + G  +  +T +      +    G +          + 
Sbjct: 633 VSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGNVLPNKVMYTCFVD 692

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                G+   G     Q+   G  P+    N +I  +       + ++LL  M  +N  P
Sbjct: 693 GMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGP 752

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++G  K +    ++ ++  +   G +PD +   +++ G+C+   L    K+ 
Sbjct: 753 NLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKIL 812

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              I +G+  + YT+N +I   C    +  A  L K M   G      T + +++ L  +
Sbjct: 813 KAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNRN 872

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            R  E+  +  EM+++GI  +   Y  LI G C+ G I
Sbjct: 873 HRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDI 910


>gi|357127090|ref|XP_003565218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Brachypodium distachyon]
          Length = 886

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ + N L +++ +   F  A   ++ +   G  PN  +  + I  LC+ G++++A C 
Sbjct: 335 PNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALCM 394

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             +++E GV  ++  +NS +  C K D  D+      +++E G          +I   C 
Sbjct: 395 LDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCR 454

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +S   EL R++ E G+      F  LI+ FC+ K     S L + M   N  P+  T
Sbjct: 455 KGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFNKMTESNLEPNEVT 514

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  VI G C      +A+++++ +  RG  PD   Y ++I GLC       A++   ++ 
Sbjct: 515 FNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDGASKAKEFVADLE 574

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           +   + N+++  +++HG+CR   L EA  +  EM   G     +++  ++        ++
Sbjct: 575 NNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSE 634

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           ++  LF EM +KG+  D + +  +I  Y KEG +V
Sbjct: 635 KSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMV 669



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G + D V+C  L           +A++    +   GF P+  +    +  L + G +EEA
Sbjct: 262 GVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEA 321

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F    +L E+ +  +I  +N+ L    K        +L +++ + G          LI +
Sbjct: 322 FRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHS 381

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +   +L ++ E G+      +N LI+  C+K +       L  MV     P+
Sbjct: 382 LCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPN 441

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  VI GLC+      A  +   + E+G   +T  +T +I+G CK   + +A +++ 
Sbjct: 442 AASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKMDEASRLFN 501

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M    L PNE T+N++I GYC + ++ +A +L+ +M+ +G      TY +LI+GLCL  
Sbjct: 502 KMTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTD 561

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +A     ++       +  +   L+ G+C+EG++
Sbjct: 562 GASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRL 598



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 140/287 (48%), Gaps = 9/287 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-I 206
           LC++  + EA    + +   GV     T  + + G  + +  D+  ++  D+   G++  
Sbjct: 242 LCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYGFCRTEELDMALEMTGDMARLGFVPS 301

Query: 207 QAFCN--------DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +A C+         G+V E + L  Q+ E  +VP   A+N L++  C+   F     L++
Sbjct: 302 EANCSFMLDGLRKKGRVEEAFRLACQLGELRMVPNIFAYNALLNNMCKNGMFSEADRLVN 361

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  +   P+  TY  +I+ LCK     +A  + + ++E+G       Y ++I+  CK  
Sbjct: 362 EMSDKGLEPNEVTYAILIHSLCKRGMMDDALCMLDRMREKGVRMTVYPYNSLINCCCKKD 421

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L  A     EM+  GL PN  +Y+ +I G CR  +L  A  LH++M +KG    T T+ 
Sbjct: 422 DLDMAMGFLSEMVEIGLTPNAASYSPVIAGLCRKGDLSGAVELHRKMAEKGVAWNTYTFT 481

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LI G C   + DEA  LF +M +  +  + +T+N +I+GYC  G I
Sbjct: 482 ALINGFCKAKKMDEASRLFNKMTESNLEPNEVTFNAVIEGYCLVGDI 528



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 156/340 (45%), Gaps = 18/340 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD  + + +  SLV+ R F +A    D    +G   +       I+  CE   ++ A
Sbjct: 157 GIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYCEVRNLDGA 216

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +++++ G   S   +N  + G  K  R      + + ++  G          L+  
Sbjct: 217 KGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEVTCRTLVYG 276

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
           FC   ++    E+   +   G VP     + ++    +K   GRV E   L   +     
Sbjct: 277 FCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKK---GRVEEAFRLACQLGELRM 333

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+ F Y  ++N +CK+    EA R+ N++ ++G  P+ V Y  +IH LCK G + DA  
Sbjct: 334 VPNIFAYNALLNNMCKNGMFSEADRLVNEMSDKGLEPNEVTYAILIHSLCKRGMMDDALC 393

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           M   M  KG+    Y YNS+I+  C+ D+L+ A     EM++ G      +Y+ +IAGLC
Sbjct: 394 MLDRMREKGVRMTVYPYNSLINCCCKKDDLDMAMGFLSEMVEIGLTPNAASYSPVIAGLC 453

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G    A  L  +MA+KG+  +  T+  LI G+CK  K+
Sbjct: 454 RKGDLSGAVELHRKMAEKGVAWNTYTFTALINGFCKAKKM 493



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 140/306 (45%), Gaps = 10/306 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           +  +   PN  +    I+  C  G I +AF  + ++   G+     T+ S + G    D 
Sbjct: 503 MTESNLEPNEVTFNAVIEGYCLVGDIRKAFQLYDQMMCRGLTPDNYTYRSLISGLCLTDG 562

Query: 189 TDLVWKLYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                +   DL              L+  FC +G+++E Y +  ++   G   +  +F  
Sbjct: 563 ASKAKEFVADLENNCSVLNKFSLTALLHGFCREGRLTEAYHVWNEMAMWGGKLDLISFTI 622

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           ++    ++ +  +   L   M  +   PDN  +  +IN   K    ++A   ++++   G
Sbjct: 623 IVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCMINMYSKEGNMVQALNCWDEMIADG 682

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           ++P+TV YT +++ LCK   L  A  +  EM+    LPN YT+N  +  +    NLE AK
Sbjct: 683 HLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHFLPNSYTFNCFLDYFATEGNLETAK 742

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L+  ML +G+    V+ NTLI G C  G+  EA  L     + G F D I+Y+T+I   
Sbjct: 743 DLYFAML-QGFLANIVSVNTLIKGFCKVGQIQEAIDLISRSTENGFFPDCISYSTVIHEL 801

Query: 420 CKEGKI 425
           CK+G I
Sbjct: 802 CKKGDI 807



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/333 (21%), Positives = 147/333 (44%), Gaps = 19/333 (5%)

Query: 101 GFSPD------LVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +PD      L+S   L D   +A+ F      L++     N  SL   +   C  G +
Sbjct: 542 GLTPDNYTYRSLISGLCLTDGASKAKEFVAD---LENNCSVLNKFSLTALLHGFCREGRL 598

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            EA+  ++++   G    + ++   +   +K   ++    L+ ++ E G          +
Sbjct: 599 TEAYHVWNEMAMWGGKLDLISFTIIVYAALKQHDSEKSCVLFREMKEKGVRPDNVFHTCM 658

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +  +G + +      +++ DG +P    +  L++  C+  +      L   M+A + 
Sbjct: 659 INMYSKEGNMVQALNCWDEMIADGHLPNTVTYTALVNNLCKSWHLSSAELLCKEMLASHF 718

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+++T+   ++    +   LE  +       +G++ + V   T+I G CK+G + +A  
Sbjct: 719 LPNSYTFNCFLDYF-ATEGNLETAKDLYFAMLQGFLANIVSVNTLIKGFCKVGQIQEAID 777

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +       G  P+  +Y+++IH  C+  ++ EA  L  EML KG     V YN LI    
Sbjct: 778 LISRSTENGFFPDCISYSTVIHELCKKGDINEAIELWNEMLYKGVKPDIVAYNILIRWCN 837

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +HG +D+   ++ +M +KG+  +  T+  L  G
Sbjct: 838 IHGESDKCLGIYIDMVKKGVQPNWHTHRALFVG 870



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 94/203 (46%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           +L   L  G+ P+    ++++    + + F     L   M+      D + Y   I   C
Sbjct: 149 VLHLSLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYC 208

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           + R    A  +   +++ G     V Y  +I+GLCK   + +A  +   M+ +G+  +E 
Sbjct: 209 EVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEV 268

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T  ++++G+CR + L+ A  +  +M   G+  +    + ++ GL   GR +EA+ L  ++
Sbjct: 269 TCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRVEEAFRLACQL 328

Query: 401 AQKGIFRDVITYNTLIQGYCKEG 423
            +  +  ++  YN L+   CK G
Sbjct: 329 GELRMVPNIFAYNALLNNMCKNG 351



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 45/170 (26%), Positives = 79/170 (46%)

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +LH  ++   APD  T  +++  L K R+   A  +F+ +   G + D  +YT  I   C
Sbjct: 149 VLHLSLSAGIAPDQHTASQILFSLVKIRQFALARHLFDGMLHSGVLLDEYVYTAGIRAYC 208

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           ++  L  A+ +   M  +G   +   YN +I+G C+   + EA  +   ML +G     V
Sbjct: 209 EVRNLDGAKGLVARMQDEGDKVSAVPYNVLIYGLCKNQRVREAVDVKNSMLARGVAADEV 268

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           T  TL+ G C     D A  +  +MA+ G        + ++ G  K+G++
Sbjct: 269 TCRTLVYGFCRTEELDMALEMTGDMARLGFVPSEANCSFMLDGLRKKGRV 318


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 145/283 (51%), Gaps = 12/283 (4%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
             F   ++  +  V  ++ T+   +  C +  R DL +    ++I+ GY         L+
Sbjct: 81  SGFNRMARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLL 140

Query: 207 QAFCNDGKVSEGYEL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--AR 263
           ++ C + + S    + LR++ E G  P   ++N L+   C +       ELLH M     
Sbjct: 141 KSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGG 200

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  PD  +Y  +I+GL K     +AY  ++++ ERG +PD V Y T++  LCK   +  A
Sbjct: 201 DCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKA 260

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +   M+  G++P+  TYNS++HGYC     +EA  + ++M   G     VTY +L+  
Sbjct: 261 MDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDY 320

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LC +GR  EA  + + M ++G+  +VITY+TL+ GY  +G +V
Sbjct: 321 LCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALV 363



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/241 (25%), Positives = 110/241 (45%), Gaps = 12/241 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
           G+   P      ++ LC       A      ++ E+G    + ++N  L G     R+  
Sbjct: 128 GYRVEPIIFTPLLKSLCAEKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQE 187

Query: 192 VWKLYH-----------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
             +L H           D++    +I     +G   + Y    ++LE G++P+   +N +
Sbjct: 188 ALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTI 247

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++  C+ +   +  ++L+ MV     PD  TY  +++G C S +  EA  +   +   G 
Sbjct: 248 VAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGV 307

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD V YT+++  LCK G   +ARK+   MI +GL PN  TY++++HGY     L E + 
Sbjct: 308 EPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRD 367

Query: 361 L 361
           L
Sbjct: 368 L 368



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 64/280 (22%), Positives = 126/280 (45%), Gaps = 12/280 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT--- 189
             +P  ++  + I C C +G ++  F     + + G       +   L       RT   
Sbjct: 93  AVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEKRTSNA 152

Query: 190 -DLVWKLYHDLIESGY------LIQAFCNDGKVSEGYELLRQVLEDG--LVPENTAFNKL 240
            ++V +   +L  + +      L++  C++ +  E  ELL  + +DG    P+  +++ +
Sbjct: 153 MNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTI 212

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I    ++ +  +     H M+ R   PD  TY  ++  LCK++   +A  V N + + G 
Sbjct: 213 IDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGV 272

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           +PD + Y +++HG C  G   +A  +  +M   G+ P+  TY S++   C+     EA++
Sbjct: 273 MPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARK 332

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           +   M+ +G     +TY+TL+ G    G   E   L + M
Sbjct: 333 ILDSMIKRGLKPNVITYSTLLHGYATKGALVEMRDLLDLM 372


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 170/369 (46%), Gaps = 46/369 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+ N+L ++  + R ++ AM+ +D   + G +PN  +  + +  +C  G +++A
Sbjct: 197 GCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDA 256

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G   S   +N+ L G    +R     +L  +++             +I +
Sbjct: 257 LELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYS 316

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +  +LL ++ + G       +N +I+  CE++N      LL  M +    PD
Sbjct: 317 LCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPD 376

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ GLC + + ++A  + +++ + G +PD V + T+I  LC+ G + DA +++ 
Sbjct: 377 IVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 436

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRI----------------------------------DN 354
           +M  KG  PN  TY+++I G  +                                   D 
Sbjct: 437 QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDT 496

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +EEA +  +++ D G    TV YN ++ GLC +G+T+ A  +   M   G   D +TY  
Sbjct: 497 IEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVI 556

Query: 415 LIQGYCKEG 423
           LI+G   EG
Sbjct: 557 LIEGLAYEG 565



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C  G+V +   +L  +L  G  P+   +N L+   C+ + + +  EL+  M A  
Sbjct: 173 LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 232

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+N TY  +++G+C      +A  +  +L   G  P TV Y TV+ GLC     GDA 
Sbjct: 233 CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 292

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+ +   PNE T+N +I+  CR   L++A +L ++M   G     VTYN +I GL
Sbjct: 293 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 352

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C     D A  L  +M   G   D++TYNTL++G C   + V+
Sbjct: 353 CEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVD 395



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 143/334 (42%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G +  +V+   L D    A     A   +      PN  +    I  LCE G + +A   
Sbjct: 130 GPAATVVAYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSV 189

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIK-------IDRTDLVWK--LYHDLIESGYLIQAFCN 211
              +   G    + T+N  L    K       ++  DL+       + +    L+   C 
Sbjct: 190 LDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCG 249

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +G V +  ELLR +   G  P    +N ++   C  + +G   EL+  M+  N  P+  T
Sbjct: 250 EGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEAT 309

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  VI  LC+     +A ++   + + G   + V Y  +I+GLC+   +  A  +  +M 
Sbjct: 310 FNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMK 369

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  TYN+++ G C      +A+ L   M   G     VT+NTLI  LC  G   
Sbjct: 370 SYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMV 429

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  +F++M  KG   + ITY+T+I G  K  K+
Sbjct: 430 DAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 463



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 133/319 (41%), Gaps = 47/319 (14%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++   + L SH G  P  V+ N +   L  A  +  A + +         PN  +  + I
Sbjct: 256 ALELLRNLPSH-GCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVI 314

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
             LC  GL+++A     K+ + G   +I T+N+ + G  +    D    L          
Sbjct: 315 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 374

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    L++  C+  +  +  EL+  + ++G +P+N  FN LI   C+K       E+
Sbjct: 375 PDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEV 434

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD------------- 303
              M  +   P++ TY  +I+GL K+ K  +A  +FN++  +G+ PD             
Sbjct: 435 FKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDD 494

Query: 304 ---------------------TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
                                TV+Y  ++ GLC+ G    A  +   M+  G +P++ TY
Sbjct: 495 DTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTY 554

Query: 343 NSMIHGYCRIDNLEEAKRL 361
             +I G      L EA+ L
Sbjct: 555 VILIEGLAYEGYLNEAREL 573



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 116/270 (42%), Gaps = 47/270 (17%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSP 136
           L +Q NV  ++     + S YG  PD+V+ N L   L  A  +  A   MD +   G  P
Sbjct: 352 LCEQRNVDGAMGLLSKMKS-YGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLP 410

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +    I  LC+ GL+ +A   F ++ + G   +  T+++ + G  K  + D   +L+
Sbjct: 411 DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 470

Query: 197 HDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           +++   G+        L +   +D  + E  + +R++ + G+ P                
Sbjct: 471 NEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISP---------------- 514

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                    HT++          Y  ++ GLC++ K   A  +   +   G +PD + Y 
Sbjct: 515 ---------HTVL----------YNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYV 555

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            +I GL   G+L +AR++  ++  + +L N
Sbjct: 556 ILIEGLAYEGYLNEARELLIKLCSRDVLVN 585



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 77/202 (38%), Gaps = 42/202 (20%)

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL-------KERGYVPDTVMYTTVIHGLC 315
           R  +P     ++    L  S +RL A     DL       +     PD  +   ++  LC
Sbjct: 55  RLESPTTRQQQQAPRRLLGSDRRLSALVHRGDLDAALRLVESSPRPPDAALANRLVRDLC 114

Query: 316 KMGW--------------------------------LGDARKMWFEMIHKGLLPNEYTYN 343
           + G                                 LGDAR++   M  +   PN YTYN
Sbjct: 115 RRGRPDDAERVVGACGPAATVVAYGALTDGYCRAGRLGDARRVVGGMPVQ---PNAYTYN 171

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            +IH  C    + +A  +  +ML +G     VTYN L+   C      +A  L + M  +
Sbjct: 172 PLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAE 231

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           G   + +TYN L+ G C EG +
Sbjct: 232 GCTPNNVTYNVLMDGMCGEGDV 253


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 34/348 (9%)

Query: 86  VLLSIRFFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPN 137
           V L+ +  + LH H      GF  + VS   L D L +A   + AM  L   D     PN
Sbjct: 59  VCLNDKVKETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPN 118

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
                  I  LC+  L+ +AF  +S++    +   + T+N+ + GC+ +           
Sbjct: 119 VVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIV----------- 167

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                          G++ E   L  Q+L   + P+   FN L+   C++    +   +L
Sbjct: 168 ---------------GRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVL 212

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ ++  PD  TY  +++G    ++  +A  VFN +  RG  PD   Y+ +I+GLCK 
Sbjct: 213 AVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKT 272

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             + +A  +  EM  K + PN  TY+S+I G  +   + +A  L  EM ++G     +TY
Sbjct: 273 KMVDEAVNLLKEMHSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITY 332

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           N+L+  LC + + D+A  L  ++  +GI  D+ TY  L+ G CK G++
Sbjct: 333 NSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRL 380



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 98/202 (48%), Gaps = 10/202 (4%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN------GLCKSRKR 285
           P    F K+ +   +  +F  V  L H M  R    D      ++N       +C + K 
Sbjct: 6   PTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKV 65

Query: 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYN 343
            E     +D+  +G+  + V Y T+I GLCK G    A ++   +   GLL  PN   Y+
Sbjct: 66  KETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNI--DGLLVQPNVVMYS 123

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           ++I+  C+   + +A  L+ +ML K      +TYNTL+ G  + GR  EA  LF +M  K
Sbjct: 124 TIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLK 183

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
            I  D+ T+N L+ G CKEG++
Sbjct: 184 NIKPDIYTFNILVDGLCKEGEM 205



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 63/310 (20%), Positives = 125/310 (40%), Gaps = 51/310 (16%)

Query: 64  DIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDS---LVEA 119
           DI +FN   D L     +K+  NVL ++   Q         PD+++ N L D    + + 
Sbjct: 188 DIYTFNILVDGLCKEGEMKKARNVL-AVMIKQ------SVDPDVITYNSLMDGYFLVKQE 240

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
                  + +   G +P+ +S  + I  LC++ +++EA     ++    +  +  T++S 
Sbjct: 241 NKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSMAPNTVTYSS- 299

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                                    LI      G++ + ++L+ ++   G   +   +N 
Sbjct: 300 -------------------------LIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNS 334

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           L+   C+     +   LL  +  +   PD +TY  +++GLCK+ +  +A  V+  L  +G
Sbjct: 335 LLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQILLIKG 394

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           Y  D++                 A  +  +M   G  PN  T+  +I      D  ++A 
Sbjct: 395 YHLDSL--------------FDKALSLLSKMEDNGCTPNPVTFEILIRALFENDMNDKAV 440

Query: 360 RLHKEMLDKG 369
            L +EM+ +G
Sbjct: 441 ELLREMIARG 450



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 60/132 (45%), Gaps = 6/132 (4%)

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI------DNL 355
           P    +  +   L K+        +  +M  +G+  +    N +++ +C +      D +
Sbjct: 6   PTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQVCLNDKV 65

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           +E    H +++ KG+    V+Y TLI GLC  G T  A  +   +    +  +V+ Y+T+
Sbjct: 66  KETLHFHDDVIAKGFQLNQVSYGTLIDGLCKAGETRAAMQVLRNIDGLLVQPNVVMYSTI 125

Query: 416 IQGYCKEGKIVN 427
           I   CK+  +++
Sbjct: 126 IYSLCKDKLVID 137


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 170/369 (46%), Gaps = 46/369 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+V+ N+L ++  + R ++ AM+ +D   + G +PN  +  + +  +C  G +++A
Sbjct: 37  GCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDA 96

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 L   G   S   +N+ L G    +R     +L  +++             +I +
Sbjct: 97  LELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVIYS 156

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G + +  +LL ++ + G       +N +I+  CE++N      LL  M +    PD
Sbjct: 157 LCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPD 216

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ GLC + + ++A  + +++ + G +PD V + T+I  LC+ G + DA +++ 
Sbjct: 217 IVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFK 276

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRI----------------------------------DN 354
           +M  KG  PN  TY+++I G  +                                   D 
Sbjct: 277 QMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDDDT 336

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           +EEA +  +++ D G    TV YN ++ GLC +G+T+ A  +   M   G   D +TY  
Sbjct: 337 IEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYVI 396

Query: 415 LIQGYCKEG 423
           LI+G   EG
Sbjct: 397 LIEGLAYEG 405



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/223 (33%), Positives = 115/223 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C  G+V +   +L  +L  G  P+   +N L+   C+ + + +  EL+  M A  
Sbjct: 13  LIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG 72

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+N TY  +++G+C      +A  +  +L   G  P TV Y TV+ GLC     GDA 
Sbjct: 73  CTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDAD 132

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EM+ +   PNE T+N +I+  CR   L++A +L ++M   G     VTYN +I GL
Sbjct: 133 ELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGL 192

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C     D A  L  +M   G   D++TYNTL++G C   + V+
Sbjct: 193 CEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVD 235



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-------IDR 188
           PN  +    I  LCE G + +A      +   G    + T+N  L    K       ++ 
Sbjct: 5   PNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMEL 64

Query: 189 TDLVWK--LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            DL+       + +    L+   C +G V +  ELLR +   G  P    +N ++   C 
Sbjct: 65  IDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCS 124

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
            + +G   EL+  M+  N  P+  T+  VI  LC+     +A ++   + + G   + V 
Sbjct: 125 AERWGDADELVTEMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVT 184

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  +I+GLC+   +  A  +  +M   G  P+  TYN+++ G C      +A+ L   M 
Sbjct: 185 YNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMT 244

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G     VT+NTLI  LC  G   +A  +F++M  KG   + ITY+T+I G  K  K+
Sbjct: 245 QNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKL 303



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/319 (23%), Positives = 133/319 (41%), Gaps = 47/319 (14%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYI 145
           ++   + L SH G  P  V+ N +   L  A  +  A + +         PN  +  + I
Sbjct: 96  ALELLRNLPSH-GCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENCPPNEATFNVVI 154

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-------- 197
             LC  GL+++A     K+ + G   +I T+N+ + G  +    D    L          
Sbjct: 155 YSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCK 214

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    L++  C+  +  +  EL+  + ++G +P+N  FN LI   C+K       E+
Sbjct: 215 PDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEV 274

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD------------- 303
              M  +   P++ TY  +I+GL K+ K  +A  +FN++  +G+ PD             
Sbjct: 275 FKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKGFNPDKIYQLLAECLNDD 334

Query: 304 ---------------------TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
                                TV+Y  ++ GLC+ G    A  +   M+  G +P++ TY
Sbjct: 335 DTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTY 394

Query: 343 NSMIHGYCRIDNLEEAKRL 361
             +I G      L EA+ L
Sbjct: 395 VILIEGLAYEGYLNEAREL 413



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/270 (22%), Positives = 116/270 (42%), Gaps = 47/270 (17%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSP 136
           L +Q NV  ++     + S YG  PD+V+ N L   L  A  +  A   MD +   G  P
Sbjct: 192 LCEQRNVDGAMGLLSKMKS-YGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLP 250

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           +  +    I  LC+ GL+ +A   F ++ + G   +  T+++ + G  K  + D   +L+
Sbjct: 251 DNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELF 310

Query: 197 HDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           +++   G+        L +   +D  + E  + +R++ + G+ P                
Sbjct: 311 NEMGHKGFNPDKIYQLLAECLNDDDTIEEAIQTVRKLQDSGISP---------------- 354

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                    HT++          Y  ++ GLC++ K   A  +   +   G +PD + Y 
Sbjct: 355 ---------HTVL----------YNAILLGLCRNGKTEFAIDIMAYMVSSGCMPDDLTYV 395

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            +I GL   G+L +AR++  ++  + +L N
Sbjct: 396 ILIEGLAYEGYLNEARELLIKLCSRDVLVN 425


>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Brachypodium distachyon]
          Length = 673

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 143/301 (47%), Gaps = 13/301 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+    +  I  LC  G + EA     ++  MG    + T+N  + G   + R    
Sbjct: 202 GCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVHGLCTLGRLREA 261

Query: 193 WKLYHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L   +         I  G+L++  C   +V E   +L +V E  +V     FN +I R
Sbjct: 262 ARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVV----LFNTVIGR 317

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
                     +EL  TM ++   PD  TY  +I+GLCK  +   A ++  +++++G+ P 
Sbjct: 318 CLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPS 377

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT ++H  C+ G   + R M   M  KGL  N   YN MI   C+   +++A R  +
Sbjct: 378 IVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQ 437

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  +GY     TYNT+I  LC + + +EA +LFE +  +G+  + ITYNTLI    + G
Sbjct: 438 EMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNG 497

Query: 424 K 424
            
Sbjct: 498 S 498



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 156/337 (46%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S D+ + N +   L      + A   +D     G  PN  +    ++ LC +  +EEA
Sbjct: 237 GCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEA 296

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ E+ V      +N+ +  C+   +     +LY  +   G          LI  
Sbjct: 297 RTMLGRVPELNVV----LFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHG 352

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++    +LLR++ + G  P    +  L+  FC    +  +  +L  M  +  + +
Sbjct: 353 LCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMN 412

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I  +CK R+  +A R   ++K +GY PD   Y T+I+ LC    + +A  ++ 
Sbjct: 413 LEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFE 472

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++H+G++ N  TYN++IH   R  + ++A  L  +M+  G     V+YN LI  LC  G
Sbjct: 473 NLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDG 532

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D +  L  EMA+KGI  + ++YN LI   CK  ++
Sbjct: 533 NVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRV 569



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 137/302 (45%), Gaps = 9/302 (2%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + S G  P+ ++  + I  LC+ G +  A     ++++ G   SI T+   L    +   
Sbjct: 334 MGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGM 393

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D +  +   + + G          +I A C D ++ +    ++++   G  P+   +N 
Sbjct: 394 WDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNT 453

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +I   C          L   ++      +  TY  +I+ L ++    +A  + ND+   G
Sbjct: 454 IIYHLCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHG 513

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
              D V Y  +I  LC+ G +  +  +  EM  KG+ PN  +YN +I   C+   + +A 
Sbjct: 514 CSLDIVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDAL 573

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L KEML++      VTYNTLI GLC  G    A +L E++  + +  D+ITYN LI  +
Sbjct: 574 ELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWH 633

Query: 420 CK 421
           CK
Sbjct: 634 CK 635



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 130/299 (43%), Gaps = 41/299 (13%)

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQAFCNDGKVSE 217
            V  S +++N+ L    + D    V  LY  ++    +           +A C  G+  E
Sbjct: 131 AVSPSFRSYNTVLAAFARADCHTDVLSLYRRMVHRDRVPPTTFTFSIAARALCRLGRADE 190

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +LR +   G VP+   +  +I   C +      + LL  M     + D  T+ ++++
Sbjct: 191 ALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFNDIVH 250

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM----------- 326
           GLC   +  EA R+ + +  RG VP+ + Y  ++ GLC    + +AR M           
Sbjct: 251 GLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTMLGRVPELNVVL 310

Query: 327 --------------------WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
                               +  M  KG  P+ +TY+ +IHG C++  L  A +L +EM 
Sbjct: 311 FNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREME 370

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           DKG+  + VTY  L+   C +G  D    + E M+ KG+  ++  YN +I   CK+ ++
Sbjct: 371 DKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRM 429



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 149/334 (44%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + ++L   L +      AM  L   +  GF+P+  +  + +   C +G+ +  
Sbjct: 338 GCPPDAHTYSILIHGLCKLGRLGSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNI 397

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + G+  +++ +N  +    K  R D   +   ++   GY         +I  
Sbjct: 398 RAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYH 457

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN+ ++ E   L   +L +G+V     +N LI       ++     L + MV    + D
Sbjct: 458 LCNNNQMEEAEYLFENLLHEGVVANAITYNTLIHALLRNGSWQDAISLANDMVLHGCSLD 517

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I  LC+      +  + +++ E+G  P+ V Y  +I  LCK   + DA ++  
Sbjct: 518 IVSYNGLIKALCRDGNVDRSIMLLSEMAEKGIKPNNVSYNLLISELCKTRRVRDALELSK 577

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+++ L P+  TYN++I+G C++  +  A  L +++ ++      +TYN LI+  C   
Sbjct: 578 EMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADIITYNILISWHCKAR 637

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
              +A  L       GI  +  T+  ++Q + ++
Sbjct: 638 LLHDASMLLNRAVTSGITPNERTWGIMVQNFVRK 671


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/231 (35%), Positives = 124/231 (53%), Gaps = 6/231 (2%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D      L+  FC+ G+++ G+ +L ++L+ G  P    F  LI   C K   G+V++ L
Sbjct: 104 DFFTLNILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLK---GQVNKAL 160

Query: 258 H---TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           H    ++A+    D  +Y  +ING+CK      A ++   +  R   P+  MY T+I  L
Sbjct: 161 HFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDAL 220

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK   + +A  ++ EM  KG+  N  +YN MI G+C+   ++EA  L KEM  K    T 
Sbjct: 221 CKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTI 280

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           VTY +L+ GLC  GR    + L +EM  +GI  DVITYN+LI G CK G +
Sbjct: 281 VTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHL 331



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 101/389 (25%), Positives = 175/389 (44%), Gaps = 39/389 (10%)

Query: 55  PRWEQTLLSDI-------PSF-NFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDL 106
           P+  Q++LS++       PS  N +D +        Q N +L +R           +P +
Sbjct: 28  PQQTQSILSNLILTKVKPPSIQNVDDAV-------SQFNSMLCMRH----------TPPV 70

Query: 107 VSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +  N + DS    + +  A+     L+  G  P+  +L + + C C  G I   F   +K
Sbjct: 71  IQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMGQINFGFSVLAK 130

Query: 164 LKEMGVFGSIKTWNSALLG-CIKIDRTD--------LVWKLYHDLIESGYLIQAFCNDGK 214
           + + G      T+ + + G C+K             L   +  D +  G LI   C  G 
Sbjct: 131 ILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGD 190

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
                +L+R++      P    +N +I   C+ +       L   M A+  + +  +Y  
Sbjct: 191 TRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNI 250

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I G CKS+   EA  +F ++ ++  VP  V Y +++ GLCK G +    ++  EM  +G
Sbjct: 251 MIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRG 310

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +  +  TYNS+I G C+  +L+ A  L  +M D  +    +T+  L+ GLC  GR  +A 
Sbjct: 311 IPADVITYNSLIDGLCKNGHLDRAIALFNKMKDXRFDR--LTFTILLDGLCKGGRLKDAQ 368

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +F+++  K    DV  YN +I GYCK+G
Sbjct: 369 EVFQDLLTKEYDLDVYPYNVMINGYCKQG 397



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 83/330 (25%), Positives = 143/330 (43%), Gaps = 14/330 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N+L +              L      G+ P+  +    I+ LC  G + +A
Sbjct: 100 GIQPDFFTLNILMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKA 159

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYHDLIESGY-----LIQA 208
                KL   G+     ++ + + G  KI  T     LV K+   L +        +I A
Sbjct: 160 LHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDA 219

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C    VSE Y L  ++   G+     ++N +I  FC+ K       L   M  +N  P 
Sbjct: 220 LCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPT 279

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLCKS +    + + +++ +RG   D + Y ++I GLCK G L  A  ++ 
Sbjct: 280 IVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFN 339

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  K    +  T+  ++ G C+   L++A+ + +++L K Y      YN +I G C  G
Sbjct: 340 KM--KDXRFDRLTFTILLDGLCKGGRLKDAQEVFQDLLTKEYDLDVYPYNVMINGYCKQG 397

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             +EA  +  +M   G     +T+  +I  
Sbjct: 398 LLEEALTMRSKMEDNGCIPSAVTFEIIINA 427



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 138/309 (44%), Gaps = 31/309 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D VS   L + + +    + A+     +D     PN       I  LC+  L+ EA
Sbjct: 170 GIKFDQVSYGTLINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEA 229

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           +  FS++   G+  ++ ++N                           +I+ FC    V E
Sbjct: 230 YGLFSEMTAKGISANVVSYN--------------------------IMIKGFCKSKMVDE 263

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L +++ +  +VP    +  L+   C+      V EL+  M  R    D  TY  +I+
Sbjct: 264 ALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLID 323

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK+     A  +FN +K+  +  D + +T ++ GLCK G L DA++++ +++ K    
Sbjct: 324 GLCKNGHLDRAIALFNKMKDXRF--DRLTFTILLDGLCKGGRLKDAQEVFQDLLTKEYDL 381

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + Y YN MI+GYC+   LEEA  +  +M D G   + VT+  +I  L      D+A  L 
Sbjct: 382 DVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINALFEKDENDKAEKLL 441

Query: 398 EEMAQKGIF 406
            EM  +G+ 
Sbjct: 442 HEMIARGLL 450



 Score = 38.1 bits (87), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 23/104 (22%), Positives = 46/104 (44%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA   +  M+     P    +N ++  +  + +   A  L   +  KG      T N L+
Sbjct: 53  DAVSQFNSMLCMRHTPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILM 112

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C  G+ +  + +  ++ ++G     IT+ TLI+G C +G++
Sbjct: 113 NCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQV 156


>gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 840

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 172/356 (48%), Gaps = 13/356 (3%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNP 138
           Q  NV  +++ ++ + SH GF   ++S  VL  SL ++R   VA      +++ G  P+ 
Sbjct: 398 QIGNVEEALKLYKEMISH-GFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDL 456

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI---KIDRTDLVW-- 193
            +    I  LC+ G +++A   + K+    +  +     + L+G     KI +  + +  
Sbjct: 457 ITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDY 516

Query: 194 ----KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
                L  D+I    +I  +   G   E  +L +Q+ E G+ P    FN L+  FC  + 
Sbjct: 517 LITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRK 576

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             +   LL T+      P+  TY  ++N  C+         + +++K +   P  + YT 
Sbjct: 577 LSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTV 636

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           VI GLCK   L ++ ++  +M   GL P++ +YN++I  +C+  ++ +A +L+ +ML   
Sbjct: 637 VIKGLCKQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHN 696

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              T+VTYN LI G C++G   +A +L   +  + +  +   Y T+I+ +C +G +
Sbjct: 697 LEPTSVTYNILINGFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDV 752



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 158/336 (47%), Gaps = 14/336 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF-SPNPN--SLELYIQCLCESGLIE 155
           ++G  PD+V+ N+L            A + +       PNPN  +  + I   C+ G +E
Sbjct: 344 NHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVE 403

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLY---------HDLIESGYL 205
           EA   + ++   G   SI + ++ LLG + K  + D+ +KL+          DLI    L
Sbjct: 404 EALKLYKEMISHGFQLSIIS-STVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTL 462

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C  G+V +   L  ++  + ++P +     ++   CEK    +       ++  N 
Sbjct: 463 IHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNL 522

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           + D   Y  +I+G  K     EA +++  L E+G  P  V + ++++G C    L  AR+
Sbjct: 523 SLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARR 582

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   +   GL PN  TY ++++ YC   N++    L  EM  K  G T +TY  +I GLC
Sbjct: 583 LLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLC 642

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              +  E+  L E+M   G+  D ++YNT+IQ +CK
Sbjct: 643 KQWKLQESCQLLEDMDAVGLTPDQVSYNTIIQAFCK 678



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 156/336 (46%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           F P +VS N +     +     VA  F   +   G  P+  S  + I  LC +G + EA 
Sbjct: 277 FQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHGLCIAGSMGEAL 336

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
              + ++  G+   + T+N    G   +   +  W +   ++  G          LI   
Sbjct: 337 DLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPNLVTYTVLICGH 396

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G V E  +L ++++  G      +   L+   C+ +      +L   M A    PD 
Sbjct: 397 CQIGNVEEALKLYKEMISHGFQLSIISSTVLLGSLCKSRQVDVAFKLFCEMEANGLRPDL 456

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+GLCK  +  +A  ++  +     +P+++++  ++ GLC+ G +  AR  +  
Sbjct: 457 ITYSTLIHGLCKQGEVQQAILLYEKMCSNRIIPNSLIHGAILMGLCEKGKISQARMYFDY 516

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +I   L  +   YN MI GY +  N  EA +L+K++ +KG   T VT+N+L+ G C++ +
Sbjct: 517 LITSNLSLDIILYNIMIDGYIKRGNTREAVKLYKQLGEKGISPTIVTFNSLMYGFCINRK 576

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +A  L + +   G+  + +TY TL+  YC+EG +
Sbjct: 577 LSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNM 612



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/257 (24%), Positives = 123/257 (47%), Gaps = 22/257 (8%)

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED 228
           + GS ++W          D +++VW +         L  A+     V +   +L ++ + 
Sbjct: 168 LLGSFRSW----------DSSNVVWDM---------LACAYSRSAMVHDALFVLVKMKDL 208

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
             +     +N L+      ++   + ++ + +         +T   V++GLC+  +  +A
Sbjct: 209 NFIVSIQTYNSLLYNL---RHSNIMWDVYNEIKVSGTPQSEYTSSIVVDGLCRQSRFQDA 265

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
              F D + + + P  V + T++   CK+G++  A+  +  M+  GLLP+ Y+YN +IHG
Sbjct: 266 VLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSFFCMMLKHGLLPDAYSYNILIHG 325

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C   ++ EA  L  +M + G     VTYN L  G  L G  + A+++ ++M  KG   +
Sbjct: 326 LCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRLLGLINGAWNIIQKMLIKGPNPN 385

Query: 409 VITYNTLIQGYCKEGKI 425
           ++TY  LI G+C+ G +
Sbjct: 386 LVTYTVLICGHCQIGNV 402



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 70/307 (22%), Positives = 119/307 (38%), Gaps = 29/307 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP +V+ N L       R    A   LD+    G  PN  +    +   CE G ++  
Sbjct: 556 GISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLMNVYCEEGNMQSL 615

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               S++K   +  +  T+                            +I+  C   K+ E
Sbjct: 616 LELLSEMKAKAIGPTHITYT--------------------------VVIKGLCKQWKLQE 649

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL  +   GL P+  ++N +I  FC+ ++  +  +L   M+  N  P + TY  +IN
Sbjct: 650 SCQLLEDMDAVGLTPDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILIN 709

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C      +A  +   L+ R    +   YTT+I   C  G +  A   + +M+ KG   
Sbjct: 710 GFCVYGDLKDADNLLVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEV 769

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +   Y+++I   C+   + EAK     ML  G       +  L+      G  +  + L 
Sbjct: 770 SIRDYSAVIGRLCKRCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELL 829

Query: 398 EEMAQKG 404
            EM + G
Sbjct: 830 AEMIKSG 836


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 155/336 (46%), Gaps = 20/336 (5%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           V+ NVL      A     A   L   D  G   N  +  + +Q LC  G + +A   F  
Sbjct: 26  VTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDA 85

Query: 164 LKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCND 212
             E+      + ++ + + G  K+ R D  + L+  ++ +G           L+   C  
Sbjct: 86  SLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQ 145

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT---MVARNRAPDN 269
            ++     ++ +  +    P+   +N L++   +    GRV E L T   M      P  
Sbjct: 146 DRLDAARAVITEARKRDFAPDVVTYNTLMAALFQ---LGRVDEALATFTQMTEEGYVPTL 202

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            ++  +I GLC++R+  +A  VFN++ +R + P+ V Y+ VI GLCK   L +A+++   
Sbjct: 203 VSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDR 262

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ +G  P+   Y  ++ G+     L+ A  L + M+ +G     VTY  +I  LC  GR
Sbjct: 263 MVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGR 322

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            D+A+ +F E+       +V+TY+ LI GYC+  ++
Sbjct: 323 VDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRV 358



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 150/325 (46%), Gaps = 48/325 (14%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWK 194
           P+  S    I  LC+ G ++ AF  F K+   G    +  T+N+ + G  K DR D    
Sbjct: 94  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 153

Query: 195 LYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +           D++    L+ A    G+V E      Q+ E+G VP   +FN +I+  C
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-------- 297
             +      E+ + M+ R+  P+  TY  VI+GLCKS +  EA ++ + +          
Sbjct: 214 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 273

Query: 298 ---------------------------RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
                                      +G +PD V YT VI  LCK+G + DA +++ E+
Sbjct: 274 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 333

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +     PN  TY+++I GYCR   ++E  ++ +EM  +      VTYNT+I GL +  R 
Sbjct: 334 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRN 390

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTL 415
           +EAY +F EM++ G   D  TY  L
Sbjct: 391 EEAYGMFREMSECGFVPDARTYRGL 415



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 105/200 (52%), Gaps = 2/200 (1%)

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           L   +  +N LI  FC   +      LL  M       ++ T   ++ GLC+  +  +A 
Sbjct: 21  LPASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQAL 80

Query: 290 RVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIH 347
             F+   E  +  PD V YTT+I+GLCK+G +  A  ++ +M+  G   PN +TYN+++ 
Sbjct: 81  EHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVD 140

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G C+ D L+ A+ +  E   + +    VTYNTL+A L   GR DEA   F +M ++G   
Sbjct: 141 GLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVP 200

Query: 408 DVITYNTLIQGYCKEGKIVN 427
            ++++N +I G C+  ++ +
Sbjct: 201 TLVSFNAIITGLCRARRLAD 220



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 118/265 (44%), Gaps = 15/265 (5%)

Query: 102 FSPDLVSCNVLFDSLVE-ARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAF 158
           F+PD+V+ N L  +L +  R  +    F   T  G+ P   S    I  LC +  + +A 
Sbjct: 163 FAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADAL 222

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F+++ +     ++ T++  + G  K D+ D   +L   ++  G          L+  F
Sbjct: 223 EVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 282

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G++     LLR+++  G +P+   +  +I + C+        E+   +VA   +P+ 
Sbjct: 283 SAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNV 342

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I G C++ +  E  +V  ++  R   P+ V Y T+I GL  +    +A  M+ E
Sbjct: 343 VTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFRE 399

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDN 354
           M   G +P+  TY  +      ID 
Sbjct: 400 MSECGFVPDARTYRGLKRALRMIDQ 424


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 154/331 (46%), Gaps = 25/331 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+   L  + ++A+   VA +  +   + G  PN  +    I   C+SG IE+A
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKA 613

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------GYLIQAFCN 211
              +++++                G   I   D+ +K+ +++ E       G L+   C 
Sbjct: 614 CQIYARMR----------------GDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCK 657

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             KV +  +LL  +  DG  P    ++ LI  FC+        E+ H MV R   P+ +T
Sbjct: 658 AHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYT 717

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ L K ++     +V + + E    P+ V+YT +I GL K+    +A K+   M 
Sbjct: 718 YSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMME 777

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TY +MI G+ +   +++   L +EM  KG     VTY  LI   C  G  D
Sbjct: 778 EKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLD 837

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EAY L EEM Q    + V +Y  +I+GY +E
Sbjct: 838 EAYALLEEMKQTYWPKHVSSYCKVIEGYKRE 868



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%)

Query: 94  QWLH---SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           Q +H   S  G S D  +      +L +   ++ A+  ++   F PN       I  LCE
Sbjct: 261 QLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCE 320

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------- 203
           +   EEA    ++++      +++T+   L GC+   +     ++   +I  G       
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 204 --YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK------NFGRVSE 255
              L+ A+C     S  Y+LL+++ +    P    +N LI   C          F    +
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEK 440

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             + M++     +          LC   K  +AY+V +++   G+VPDT  Y+ VI  LC
Sbjct: 441 AYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               + +A  ++ EM   G++P+ YTY  +I  + +   +++A     EM+  G   T V
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TY TLI       +   A  LFE M  KG F +VITY  LI GYCK G I
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNI 610



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 142/334 (42%), Gaps = 26/334 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L D L +A   K A D L++    G  PN    +  I   C++  ++EA   
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F K+ E G   ++ T++S +    K  R DLV K+   ++E+           +I     
Sbjct: 703 FHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K  E Y+L+  + E G  P    +  +I  F +     +  EL   M ++  AP+  T
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVT 822

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-----LCKMGWLGDARKM 326
           Y  +IN  C +    EAY +  ++K+  +      Y  VI G     +  +G L +  K 
Sbjct: 823 YTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEK- 881

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT--YNTLIAGL 384
                  G  P    Y  +I  + +   LE A  LHKE++      T     Y +LI   
Sbjct: 882 ------NGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSF 935

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
               + D A+ LF +M + G+  D+ T+  L+ G
Sbjct: 936 SYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMG 969



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 151/375 (40%), Gaps = 23/375 (6%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           +P    E L    +  L ++FF W     G+         L D        +V  +FL  
Sbjct: 137 NPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLRE 196

Query: 132 TGFSPNP---NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
                       L + I+  C +GL   A     +LK+ G   +  T+N+ +   ++ D+
Sbjct: 197 IRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADK 256

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D    ++ ++ E G         +  QA C  GK  E   L+ +   +  VP    +NK
Sbjct: 257 LDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNK 313

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL-EAYRVFNDLKER 298
           +IS  CE   F    + L+ M + +  P+  TY  ++ G C ++K+L    R+ + +   
Sbjct: 314 MISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCG-CLNKKQLGRCKRILSMMIAE 372

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL--- 355
           G  P   ++ +++H  CK      A K+  +M      P    YN +I   C    L   
Sbjct: 373 GCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGP 432

Query: 356 ---EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              E A++ + EML  G     V   +    LC  G+ ++AY +  EM   G   D  TY
Sbjct: 433 VTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTY 492

Query: 413 NTLIQGYCKEGKIVN 427
           + +I   C   ++ N
Sbjct: 493 SEVIGFLCNASRVEN 507


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    +   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC +G++     +   + + GL P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +T+  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + LLP+  TYN++I+G C+  +L++   L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D   Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVD 364



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/333 (25%), Positives = 152/333 (45%), Gaps = 29/333 (8%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +   C+ G
Sbjct: 91  LTKEHKFRVPFDTCRKVIEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
            I  A   F  + + G+  S+ ++N+ + G IKI                          
Sbjct: 151 EIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKI-------------------------- 184

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G + EG+ L   +   G+ P+    + LI+  C++      +EL   M+     P+  T+
Sbjct: 185 GDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTF 244

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G CK+ +   A  ++  +  +  +PD + Y T+I+GLCK G L     +  EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSM 304

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KGL P++ TY ++I G C+  +LE A    K M+ +        Y  LI+GLC  GR+ +
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVD 364

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A  +  EM   G+  ++ TY  +I  +CK+G +
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397


>gi|356522596|ref|XP_003529932.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
           mitochondrial-like [Glycine max]
          Length = 827

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 148/310 (47%), Gaps = 9/310 (2%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +   G +P+  S    I   C+ G +++A    + + E G+  +  T+   + G  K 
Sbjct: 455 DKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKK 514

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
              +  + ++  ++ +G          +I   C  G+VSE  + L   ++   +P +  +
Sbjct: 515 GDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTY 574

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N +I  + ++        +   M     +P+  TY  +ING CKS K   A ++ +D+K 
Sbjct: 575 NCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKR 634

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +G   D  +Y T+I G CKM  + +A K + +++  GL PN   YN MI  Y  ++N+E 
Sbjct: 635 KGLELDITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEA 694

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  LHKEM++         Y +LI GL   G+   A  L+ EM  +GI  D+  YN LI 
Sbjct: 695 ALNLHKEMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLIN 754

Query: 418 GYCKEGKIVN 427
           G C  G++ N
Sbjct: 755 GLCNHGQLEN 764



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 169/361 (46%), Gaps = 22/361 (6%)

Query: 69  NFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF 128
           NF + L  ++ +   + V +++     L   Y    D+ S   LFD +VE          
Sbjct: 307 NFGEALRLKDEM-VDSRVPVNVAVATSLIKGYCVRGDVNSALRLFDEVVE---------- 355

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
               G +PN     + I+   + G +E+A   ++++K MG+  ++   N  L G  K + 
Sbjct: 356 ---VGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGFRKQNL 412

Query: 189 TDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
            +  + L    +E+G         ++   C  GKV+E   L  +++  G+ P   ++N +
Sbjct: 413 LENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLVSYNHM 472

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I   C+K       E+++ ++     P+  TY  ++ G  K      A+ +F+ +   G 
Sbjct: 473 ILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHAFNMFDQMVAAGI 532

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           VP    + ++I+GLCK+G + +AR      I +  +P   TYN +I GY +   ++ A+ 
Sbjct: 533 VPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDGYVKEGAIDSAES 592

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +++EM         +TY +LI G C   + D A  + ++M +KG+  D+  Y TLI G+C
Sbjct: 593 VYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELDITVYATLIAGFC 652

Query: 421 K 421
           K
Sbjct: 653 K 653



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 140/290 (48%), Gaps = 10/290 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I+  C  G +  A   F ++ E+GV  ++  ++  +  C KI   +   +LY  +   G 
Sbjct: 334 IKGYCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGL 393

Query: 204 --------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                   +L++ F     +   Y LL   +E+G+    T +N ++   CE         
Sbjct: 394 QPTVFILNFLLKGFRKQNLLENAYLLLDGAVENGIASVVT-YNIVLLWLCELGKVNEACN 452

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+ +   P   +Y  +I G CK     +A+ V N + E G  P+ + YT ++ G  
Sbjct: 453 LWDKMIGKGITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSF 512

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G    A  M+ +M+  G++P +YT+NS+I+G C++  + EA+      + + +  T++
Sbjct: 513 KKGDCEHAFNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSM 572

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TYN +I G    G  D A  ++ EM +  I  +VITY +LI G+CK  K+
Sbjct: 573 TYNCIIDGYVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKM 622



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/365 (24%), Positives = 153/365 (41%), Gaps = 47/365 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P LVS N +     +      A   M+ +  +G  PN  +  + ++   + G  E A
Sbjct: 461 GITPSLVSYNHMILGHCKKGCMDDAHEVMNGIIESGLKPNAITYTILMEGSFKKGDCEHA 520

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F  F ++   G+  +  T+NS + G  K+ R        +  I+  ++         I  
Sbjct: 521 FNMFDQMVAAGIVPTDYTFNSIINGLCKVGRVSEARDKLNTFIKQSFIPTSMTYNCIIDG 580

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +G +     + R++    + P    +  LI+ FC+        ++   M  +    D
Sbjct: 581 YVKEGAIDSAESVYREMCRSEISPNVITYTSLINGFCKSNKMDLALKMHDDMKRKGLELD 640

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV----------------------- 305
              Y  +I G CK +    A + F+ L E G  P+T+                       
Sbjct: 641 ITVYATLIAGFCKMQDMENACKFFSKLLEVGLTPNTIVYNIMISAYRNLNNMEAALNLHK 700

Query: 306 ------------MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
                       +YT++I GL K G L  A  ++ EM+ +G++P+ + YN +I+G C   
Sbjct: 701 EMINNKIPCDLKIYTSLIDGLLKEGKLSFALDLYSEMLCRGIVPDIFMYNVLINGLCNHG 760

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            LE A ++ KEM       T + YNTLIAG    G   EA+ L +EM  KG+  D  TY+
Sbjct: 761 QLENAGKILKEMDGNNITPTVLLYNTLIAGHFKEGNLQEAFRLHDEMLDKGLVPDDTTYD 820

Query: 414 TLIQG 418
            L+ G
Sbjct: 821 ILVNG 825



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 73/313 (23%), Positives = 133/313 (42%), Gaps = 43/313 (13%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GY 204
           I EA   F  + E GV   +   N  L   I+ +  +   +L+ ++ E            
Sbjct: 168 ITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAERRIYGDCYTLQV 227

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A    GK  E      Q    GL  +  +++ +I   C   +    S+L+       
Sbjct: 228 LMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLASKLVEGDEELG 287

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   TY  VI    +     EA R+ +++ +     +  + T++I G C  G +  A 
Sbjct: 288 WVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKGYCVRGDVNSAL 347

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--------------LDKGY 370
           +++ E++  G+ PN   ++ +I    +I N+E+A  L+  M              L KG+
Sbjct: 348 RLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPTVFILNFLLKGF 407

Query: 371 GE--------------------TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            +                    + VTYN ++  LC  G+ +EA +L+++M  KGI   ++
Sbjct: 408 RKQNLLENAYLLLDGAVENGIASVVTYNIVLLWLCELGKVNEACNLWDKMIGKGITPSLV 467

Query: 411 TYNTLIQGYCKEG 423
           +YN +I G+CK+G
Sbjct: 468 SYNHMILGHCKKG 480



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 104/259 (40%), Gaps = 35/259 (13%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           YL+ ++    K++E  E  R +LEDG+VP     N L++    +        L   M  R
Sbjct: 157 YLLISYVRANKITEAVECFRAMLEDGVVPWVPFVNVLLTAMIRRNMVEDAHRLFDEMAER 216

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK------- 316
               D +T + ++    K  K +EA R F     RG   D   Y+ VI  +C+       
Sbjct: 217 RIYGDCYTLQVLMRACLKGGKFVEAERYFGQAAGRGLKLDAASYSIVIQAVCRGSDLDLA 276

Query: 317 ---------MGWL-------------------GDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                    +GW+                   G+A ++  EM+   +  N     S+I G
Sbjct: 277 SKLVEGDEELGWVPSEGTYAAVIGACVRLGNFGEALRLKDEMVDSRVPVNVAVATSLIKG 336

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC   ++  A RL  E+++ G       ++ LI      G  ++A  L+  M   G+   
Sbjct: 337 YCVRGDVNSALRLFDEVVEVGVTPNVAIFSVLIEWCSKIGNVEKANELYTRMKCMGLQPT 396

Query: 409 VITYNTLIQGYCKEGKIVN 427
           V   N L++G+ K+  + N
Sbjct: 397 VFILNFLLKGFRKQNLLEN 415


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 155/329 (47%), Gaps = 13/329 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           S  +L   L +A+  + A+     +   G SPN  +    I  LC+SG + +A   F  +
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 199

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
            + GV  S+ T+N+ ++G  K+ R +   K+   + ++G          LI   C D K 
Sbjct: 200 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKT 258

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  ELL   +++G  P    F  LI+ +C  + F     + + M++     D   + ++
Sbjct: 259 EEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKL 318

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           IN L K  +  EA  + N++   G VP+ + YT++I G CK G +  A ++   M   G 
Sbjct: 319 INSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGC 378

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN +TYNS+++G  +   L +A  L  +M   G     +TY TL+ G C     D A+ 
Sbjct: 379 QPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFR 438

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LFE M Q G+  D   Y  L    CK G+
Sbjct: 439 LFEMMEQNGLKPDEHAYAVLTDALCKAGR 467



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 133/262 (50%), Gaps = 10/262 (3%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELL 222
           S K +N AL    + D T+ + ++Y  L++ G L         I+++C +G ++  +   
Sbjct: 32  SPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYF 91

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           R +LE GL PE    N L+  +C      +   L   M       + ++Y  +I GLC +
Sbjct: 92  RLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDA 151

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           +   +A  +F  +K  G  P+   +T +I GLCK G +GDAR ++  M   G++P+  TY
Sbjct: 152 KCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTY 211

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N+MI GY ++  + +A ++ + M   G      TYNTLI GLC   +T+EA  L     +
Sbjct: 212 NAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEELLNNAVK 270

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
           +G    V+T+  LI GYC   K
Sbjct: 271 EGFTPTVVTFTNLINGYCMAEK 292



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 146/337 (43%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           GF+P +V+   L +    A  F  A+   +    S     L+++   I  L +   ++EA
Sbjct: 272 GFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEA 331

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++   G+  ++ T+ S + G  K  + D+  ++   +   G          L+  
Sbjct: 332 KELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYG 391

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              D K+ +   LL ++ +DG++P    +  L+   C++ +F     L   M      PD
Sbjct: 392 LVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPD 451

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  + + LCK+ +  EAY     +  +G     V YTT+I G  K G    A  +  
Sbjct: 452 EHAYAVLTDALCKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIE 508

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G  P+ YTY+ ++H  C+   L EA  +  +M  +G   T   Y  LI  +   G
Sbjct: 509 RMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREG 568

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D A  ++ EM   G      TY   I  YCKEG++
Sbjct: 569 KHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRL 605



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 158/391 (40%), Gaps = 66/391 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  P++++   + D   ++    +A++ L   +  G  PN  +    +  L +   +
Sbjct: 339 SANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKL 398

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            +A    +K+++ G+  ++ T+ + L G       D  ++L+  + ++G          L
Sbjct: 399 HKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVL 458

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
             A C  G+  E Y     ++  G+      +  LI  F +  N    + L+  M+    
Sbjct: 459 TDALCKAGRAEEAYSF---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGC 515

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD++TY  +++ LCK ++  EA  + + +  RG       YT +I  + + G    A++
Sbjct: 516 TPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKR 575

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           M+ EM   G  P+  TY   I+ YC+   LE+A+ L  +M  +G     VTYN LI G  
Sbjct: 576 MYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCG 635

Query: 386 LHGRTDEAY--------------------------------------------------- 394
             G  D A+                                                   
Sbjct: 636 HMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITW 695

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L E M + G+   V TY++LI G+CK G++
Sbjct: 696 QLLERMVKHGLNPTVTTYSSLIAGFCKAGRL 726



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 163/374 (43%), Gaps = 42/374 (11%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           +  LL D  ++N       + + K+  ++  + R+F+ L    G  P+  +CN L     
Sbjct: 61  QDGLLPDTVTYN----TMIKSYCKE-GDLTTAHRYFRLLLEG-GLEPETFTCNALVLGYC 114

Query: 118 EARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
                + A      +   G   N  S  + IQ LC++  + +A   F  +K  G   +++
Sbjct: 115 RTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVR 174

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            +                           +LI   C  G+V +   L   + ++G+VP  
Sbjct: 175 AFT--------------------------FLISGLCKSGRVGDARLLFDAMPQNGVVPSV 208

Query: 235 TAFNKLISRFCEKKNFGRVSELLHT--MVARNRA-PDNFTYEEVINGLCKSRKRLEAYRV 291
             +N +I  +      GR+++ L    ++ +N   PD++TY  +I GLC  +K  EA  +
Sbjct: 209 MTYNAMIVGY---SKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEEL 264

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            N+  + G+ P  V +T +I+G C      DA +M  +M+      +   +  +I+   +
Sbjct: 265 LNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIK 324

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D L+EAK L  E+   G     +TY ++I G C  G+ D A  + + M + G   +  T
Sbjct: 325 KDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWT 384

Query: 412 YNTLIQGYCKEGKI 425
           YN+L+ G  K+ K+
Sbjct: 385 YNSLMYGLVKDKKL 398



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 86/185 (46%), Gaps = 3/185 (1%)

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           ++RF   +  GRV   L   V     PD  TY  +I   CK      A+R F  L E G 
Sbjct: 43  LARFDMTEYMGRVYSQL---VQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLLEGGL 99

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+T     ++ G C+ G L  A  ++  M   G   NEY+Y  +I G C    + +A  
Sbjct: 100 EPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVRKALV 159

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L   M   G       +  LI+GLC  GR  +A  LF+ M Q G+   V+TYN +I GY 
Sbjct: 160 LFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMIVGYS 219

Query: 421 KEGKI 425
           K G++
Sbjct: 220 KLGRM 224



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 137/318 (43%), Gaps = 25/318 (7%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +  + +  LC+   + EA     ++   G+  +I  +   +   ++  + D  
Sbjct: 514 GCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHA 573

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++Y+++  SG+          I ++C +G++ +  +L+ ++  +G+ P+   +N LI  
Sbjct: 574 KRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDG 633

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR----KRLEAYRVFN------ 293
                   R    L  MV  +  P+ +TY  ++  L K      + ++   ++N      
Sbjct: 634 CGHMGYIDRAFSTLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDI 693

Query: 294 --DLKER----GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
              L ER    G  P    Y+++I G CK G L +A  +   M  KGL PNE  Y  +I 
Sbjct: 694 TWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIK 753

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C     E+A      M + G+     +Y  L+ GLC  G  ++   LF ++ + G   
Sbjct: 754 CCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNH 813

Query: 408 DVITYNTLIQGYCKEGKI 425
           D + +  L  G  K G +
Sbjct: 814 DEVAWKILNDGLLKAGYV 831



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 42/84 (50%)

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN  +    R D  E   R++ +++  G    TVTYNT+I   C  G    A+  F  + 
Sbjct: 36  YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 95

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           + G+  +  T N L+ GYC+ G++
Sbjct: 96  EGGLEPETFTCNALVLGYCRTGEL 119


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 138/257 (53%), Gaps = 6/257 (2%)

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE 227
           G+ G I   NSAL    K+    + W +  D++    ++ A+C  G +    +L   ++ 
Sbjct: 209 GLVG-IGDLNSAL----KVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIA 263

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            G  P+ T +  LI  +C  +     + ++  M A    P+  TY  VI   CK RK  E
Sbjct: 264 SGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTE 323

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  +  ++   GYVPDT +   V+  LC+ G  G+A +MW +M+ K + P+    +++I+
Sbjct: 324 ARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIY 383

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C+   ++EA++L  E L++G+  + +TYN+LI GLC +G   EA  ++++M ++    
Sbjct: 384 WLCKKGMVQEARKLFDE-LERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEP 442

Query: 408 DVITYNTLIQGYCKEGK 424
           + +TY  LI+G+CK GK
Sbjct: 443 NAMTYEALIKGFCKIGK 459



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 144/315 (45%), Gaps = 13/315 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            +P+LVSCN+L   LV       A+  LD     G  P+  +    +   C  G +E A 
Sbjct: 196 ITPNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQ 255

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F  +   G       +   + G     +     ++  ++  +G          +I+A 
Sbjct: 256 QLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEAC 315

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C + K +E  +L R++L  G VP+     K++   C+    G  +E+   MV ++  PDN
Sbjct: 316 CKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDN 375

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
                +I  LCK     EA ++F++L ERG++P  + Y ++I GLC+ G L +A ++W +
Sbjct: 376 TVVSTLIYWLCKKGMVQEARKLFDEL-ERGFLPSLLTYNSLIIGLCENGELQEAGRVWDD 434

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ +   PN  TY ++I G+C+I    E   L KEM+ +G   +   Y  L+  L     
Sbjct: 435 MVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMSRGCTPSKFLYQALVDSLSKPSH 494

Query: 390 TDEAYHLFEEMAQKG 404
            D    + E  A +G
Sbjct: 495 DDTVCTIVEAAALRG 509



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/234 (27%), Positives = 118/234 (50%), Gaps = 3/234 (1%)

Query: 194 KLY--HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           KLY   +L+    L++     G ++   ++L +++  G+VP+   +  +++ +C K +  
Sbjct: 193 KLYITPNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLE 252

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              +L   ++A  R PD   Y  +I+G C  RK  +A R+ +++   G  P+ V Y+ VI
Sbjct: 253 GAQQLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVI 312

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
              CK     +AR +  EM+  G +P+      ++   C+     EA  + ++M+ K   
Sbjct: 313 EACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVP 372

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 +TLI  LC  G   EA  LF+E+ ++G    ++TYN+LI G C+ G++
Sbjct: 373 PDNTVVSTLIYWLCKKGMVQEARKLFDEL-ERGFLPSLLTYNSLIIGLCENGEL 425



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 13/177 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD   C  + D L +      A +    +      P+   +   I  LC+ G+++EA
Sbjct: 335 GYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIYWLCKKGMVQEA 394

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F +L E G   S+ T+NS ++G  +        +++ D++E  Y         LI+ 
Sbjct: 395 RKLFDEL-ERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEPNAMTYEALIKG 453

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           FC  GK +EGY L ++++  G  P    +  L+    +  +   V  ++     R +
Sbjct: 454 FCKIGKSNEGYALFKEMMSRGCTPSKFLYQALVDSLSKPSHDDTVCTIVEAAALRGQ 510


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 165/337 (48%), Gaps = 14/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P L +C VL +SL + R   +       +   G   N +   + I   C+SG +E+A
Sbjct: 160 GFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKA 219

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL-LGCIK------IDRTDLVWK--LYHDLIESGYLIQA 208
               S+++   VF  + T+N+ + L C K      +   D + +  +  D++    LI  
Sbjct: 220 DNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHG 279

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G++ E   L +++ +    P +  +  LI  +C   +  +   L   M A+   P 
Sbjct: 280 FCKEGRMREAMRLFKEIRD--ATPNHVTYTTLIDGYCRLNDLDQALRLREEMEAQGLYPT 337

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++  LC+  +  +A ++ N++ E+   PD V   T+I+  CK+G +  A K+  
Sbjct: 338 VVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKN 397

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+  GL  +++TY ++IHG+C+I  ++ AK L   MLD G+  +  TY+ L+ G C   
Sbjct: 398 RMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQ 457

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +    L +E  +KG+  D   Y  LI+ +CK  ++
Sbjct: 458 NEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQV 494



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
            +L+  + N     E  ++   ++ +G  P   A   L++   + +    V ++   M  
Sbjct: 134 SWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMAR 193

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
                +   Y  +I+  CKS    +A  + ++++ +   PD   Y T+I   CK G   +
Sbjct: 194 IGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYE 253

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +   M  +G+ P+  TYNS+IHG+C+   + EA RL KE+ D       VTY TLI 
Sbjct: 254 ALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNH--VTYTTLID 311

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C     D+A  L EEM  +G++  V+TYN++++  C+ G+I
Sbjct: 312 GYCRLNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRI 354



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 144/328 (43%), Gaps = 27/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           G  PD+V+ N L     +    + AM  F +    +PN  +    I   C    +++A  
Sbjct: 265 GIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDATPNHVTYTTLIDGYCRLNDLDQALR 324

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
              +++  G++ ++ T+NS                          +++  C  G++ +  
Sbjct: 325 LREEMEAQGLYPTVVTYNS--------------------------ILRKLCEIGRIRDAN 358

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           +LL ++ E  + P+N   N LI+ +C+  +     ++ + MV      D FTY+ +I+G 
Sbjct: 359 KLLNEMSEKKIEPDNVTCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGF 418

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK R+   A  +   + + G+ P    Y+ ++ G C         K+  E + KGL  ++
Sbjct: 419 CKIREMDGAKELLLSMLDAGFSPSYCTYSWLVDGYCNQQNEEAVLKLPDEFVRKGLCVDK 478

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
             Y ++I  +C+ + ++ AK++   M +KG    +V Y +L       G+ + A  L +E
Sbjct: 479 SLYRALIRRFCKREQVDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDE 538

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           M ++ +   +  Y  L   Y  +  I++
Sbjct: 539 MYKRRLMITLKIYRALNASYAGDNSILS 566



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/186 (29%), Positives = 87/186 (46%), Gaps = 2/186 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            F+ L+  +   K      ++   M+     P       ++N L K R     ++V+  +
Sbjct: 132 VFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKM 191

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
              G   +  +Y  +IH  CK G +  A  +  EM  K + P+ +TYN++I  YC+    
Sbjct: 192 ARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMH 251

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
            EA  +   M  +G     VTYN+LI G C  GR  EA  LF+E+  +    + +TY TL
Sbjct: 252 YEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEI--RDATPNHVTYTTL 309

Query: 416 IQGYCK 421
           I GYC+
Sbjct: 310 IDGYCR 315



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 53/180 (29%), Positives = 92/180 (51%), Gaps = 2/180 (1%)

Query: 248 KNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           ++F     +L  +V  +  PD  +  +  ++     ++ + EA +VF  +   G+ P   
Sbjct: 107 RDFLSTQSVLSALVRLHDDPDINSHVFSWLVIVYANTKMKQEAIQVFEHMMVNGFRPHLH 166

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
             T +++ L K        K++ +M   G+  N + YN +IH  C+  ++E+A  L  EM
Sbjct: 167 ACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNVLIHACCKSGDVEKADNLLSEM 226

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             K       TYNTLI+  C  G   EA  + + M ++GI  D++TYN+LI G+CKEG++
Sbjct: 227 ESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREGIKPDIVTYNSLIHGFCKEGRM 286


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/361 (27%), Positives = 174/361 (48%), Gaps = 25/361 (6%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
            L++ +   L +R F+         P   SCN L   L +     ++  F    G +   
Sbjct: 1   MLEEASECFLKMRKFRVF-------PKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIK 53

Query: 139 NSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
            S+  Y   I  LC+ G +E A   F+++KE G    I T+NS + G  K+   D    +
Sbjct: 54  RSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICI 113

Query: 196 YH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           +          D+I    LI  FC   ++ + +E L ++  +GL P    ++  I  FC+
Sbjct: 114 FEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCK 173

Query: 247 KKNFGRVSELLHTMVARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +   G + E +   V   R    P+ FTY  +I+  CK+    EA ++  ++ + G   +
Sbjct: 174 E---GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLN 230

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT ++ GLC+ G + +A +++  M++ G+ PN+ TY +++HG+ +   +E AK + K
Sbjct: 231 VVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILK 290

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM +K      + Y T++ GLC   R +EA  L  E+ + GI  + + Y TL+  Y K G
Sbjct: 291 EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSG 350

Query: 424 K 424
           +
Sbjct: 351 Q 351



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 91/358 (25%), Positives = 161/358 (44%), Gaps = 35/358 (9%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
            PD+++ N L +   +      A +FL    + G  PN  +   +I   C+ G+++EA  
Sbjct: 123 DPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIK 182

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F  ++ + +  +  T+ S +    K        KL  +++++G          L+   C
Sbjct: 183 FFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDGLC 242

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            +G++ E  E+ R +L  G+ P    +  L+  F + K      ++L  M  +   PD  
Sbjct: 243 EEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLL 302

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV-------------------- 310
            Y  ++ GLC   +  EA  +  ++KE G   + V+YTT+                    
Sbjct: 303 LYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 362

Query: 311 ---IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
              + GLCK      A+K++ EM+ KG++P++  Y ++I G  +  NL+EA  L   M++
Sbjct: 363 LDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIE 422

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G       Y  LI GL   G+  +A +L +EM  KG+  D + Y  LI+ Y   GK+
Sbjct: 423 IGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKV 480



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 139/317 (43%), Gaps = 44/317 (13%)

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
           ++EEA   F K+++  VF   ++ N+ L    K+ R DL  K + D+  +G         
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I   C +G +     L  Q+ E G  P+   +N LI    +         +   M   
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 120

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           +  PD  TY  +IN  CK  +  +A+   +++K  G  P+ V Y+T I   CK G L +A
Sbjct: 121 DCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNVVTYSTFIDAFCKEGMLQEA 180

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            K + +M    L PNE+TY S+I   C+  NL EA +L +E+L  G     VTY  L+ G
Sbjct: 181 IKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTYTALLDG 240

Query: 384 LCLHGRTDEAYHLF-----------------------------------EEMAQKGIFRD 408
           LC  GR  EA  +F                                   +EM +K I  D
Sbjct: 241 LCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPD 300

Query: 409 VITYNTLIQGYCKEGKI 425
           ++ Y T++ G C E ++
Sbjct: 301 LLLYGTILWGLCNESRL 317



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 161/374 (43%), Gaps = 38/374 (10%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELY 144
           LS +FF+ + +  G    + + N++ D L +    ++A      +   GF+P+  +    
Sbjct: 39  LSRKFFKDMGAA-GIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSL 97

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESG 203
           I    + GL++E  C F ++K+      + T+N AL+ C  K +R    ++  H++  +G
Sbjct: 98  IDGHGKLGLLDECICIFEQMKDADCDPDVITYN-ALINCFCKFERMPKAFEFLHEMKANG 156

Query: 204 Y---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                      I AFC +G + E  +    +    L P    +  LI   C+  N     
Sbjct: 157 LKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEAL 216

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +L+  ++      +  TY  +++GLC+  +  EA  VF  +   G  P+   YT ++HG 
Sbjct: 217 KLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGF 276

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K   +  A+ +  EM  K + P+   Y +++ G C    LEEAK L  E+ + G     
Sbjct: 277 IKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNA 336

Query: 375 VTYNT-----------------------LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           V Y T                       L+ GLC +   + A  LF+EM  KG+  D I 
Sbjct: 337 VIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIA 396

Query: 412 YNTLIQGYCKEGKI 425
           Y  LI G  K G +
Sbjct: 397 YTALIDGNMKHGNL 410



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/239 (20%), Positives = 102/239 (42%), Gaps = 6/239 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G +P+  +   L    ++A+  + A D L           L LY   +  LC    +EEA
Sbjct: 261 GVAPNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEA 320

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++KE G+  +   + + +    K  +      L  ++++   L+   C +     
Sbjct: 321 KLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLD---LVDGLCKNNCFEV 377

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +L  ++L+ G++P+  A+  LI    +  N      L   M+      D   Y  +I 
Sbjct: 378 AKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIW 437

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           GL  S +  +A  + +++  +G +PD V+Y  +I     +G + +A ++  EM  +G++
Sbjct: 438 GLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRGMI 496


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 153/317 (48%), Gaps = 15/317 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           FSP+L+S  ++ D L ++R    A+            P+  +    I  L +   ++EA+
Sbjct: 201 FSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAY 260

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------IQA 208
             F + +  G   ++ T+N+ + G  K  R +    LY D++   +L          I  
Sbjct: 261 DLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALING 320

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-P 267
                +  + YEL  ++L+ G  P+   +N L+   C+     +  E+   M   N   P
Sbjct: 321 LNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDP 380

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+  CK  +  +A ++  +++ R  +PD V +TTVI  LCK   + +A ++ 
Sbjct: 381 NVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHEL- 439

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           FE I K   P+   +N+M+ GYC+I  +++AK+LH  MLD G   T  TY  L+ G C  
Sbjct: 440 FESIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRT 499

Query: 388 GRTDEAYHLFEEMAQKG 404
           GR  +A  ++ EM + G
Sbjct: 500 GRYSDALIMYHEMIEMG 516



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 106/349 (30%), Positives = 163/349 (46%), Gaps = 20/349 (5%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           FFQ  H    F PD VS N L +   +A   K A+     +  +G +    S  + ++ L
Sbjct: 124 FFQS-HMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVL-RSHNIVLRGL 181

Query: 149 CESGLIEEAFCAFSKLKEMGVFG----SIKTWNSALLGCIKIDRTDLVWK------LYHD 198
           C  G I  A+  F  +   G+F     S       L    K+D+   ++K      +Y D
Sbjct: 182 CSGGKISMAWEVFKDMS--GIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPD 239

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           ++  G LI       +V E Y+L  +    G  P    +N +I   C+         L  
Sbjct: 240 VVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYD 299

Query: 259 TMVAR-NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            MV   +  PD FTY  +INGL  S +  +AY ++ ++ + G  PD V Y T++ GLCK 
Sbjct: 300 DMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKS 359

Query: 318 GWLGDARKMWFEM-IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           G    A +++ +M +     PN  TY  +I  +C++D L +A +L KEM  +      VT
Sbjct: 360 GCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVT 419

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + T+I  LC   R DEA+ LFE +  K    D + +NT++ GYCK  +I
Sbjct: 420 FTTVIQKLCKESRIDEAHELFESIG-KTCKPDSVLFNTMLAGYCKITRI 467



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 166/373 (44%), Gaps = 68/373 (18%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLC 149
           FQW      F+ +  +CN L    V+AR  + A  F  S     F P+  S    +    
Sbjct: 89  FQWAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFF 148

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           ++G +++A   F ++K+ G+   +++ N  L G                           
Sbjct: 149 KAGDVKKALALFGEMKDSGI-AVLRSHNIVLRG--------------------------L 181

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ GK+S  +E+ +  +     P   ++  +I   C+ +   +   L   MV +   PD 
Sbjct: 182 CSGGKISMAWEVFKD-MSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDV 240

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I+GL K R+  EAY +F + + +G  P  V Y T+I GLCK G + +A  ++ +
Sbjct: 241 VTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDD 300

Query: 330 MIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           M+ +  L P+ +TY+++I+G    +  E+A  L++EMLD G     VTYNTL+ GLC  G
Sbjct: 301 MVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSG 360

Query: 389 RTDEAYHLF------------------------------------EEMAQKGIFRDVITY 412
             D+A  +F                                    +EM  + +  D +T+
Sbjct: 361 CEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTF 420

Query: 413 NTLIQGYCKEGKI 425
            T+IQ  CKE +I
Sbjct: 421 TTVIQKLCKESRI 433



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/343 (24%), Positives = 157/343 (45%), Gaps = 17/343 (4%)

Query: 43  IAKQVCKITRTKPRWEQ-TLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYG 101
           + + +C   +    WE    +S I S N        + L +   V  +I  F+ +     
Sbjct: 177 VLRGLCSGGKISMAWEVFKDMSGIFSPNLISYTIMIDGLCKSRKVDKAITLFKQMVDK-A 235

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+V+   L D L + R  K A D  +   + G  P   +    I  LC+ G IE A 
Sbjct: 236 IYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCGRIENAL 295

Query: 159 CAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
             +  + +E  +   + T+++ + G    +R +  ++LY +++++G          L+  
Sbjct: 296 TLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDG 355

Query: 209 FCNDGKVSEGYELLRQV-LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            C  G   +  E+ R++ + +   P    +  LI RFC+    G   +L   M  R+  P
Sbjct: 356 LCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLP 415

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  T+  VI  LCK  +  EA+ +F  +  +   PD+V++ T++ G CK+  + DA+K+ 
Sbjct: 416 DAVTFTTVIQKLCKESRIDEAHELFESIG-KTCKPDSVLFNTMLAGYCKITRIDDAKKLH 474

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
             M+  G  P   TY +++ G+CR     +A  ++ EM++ G+
Sbjct: 475 DRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGF 517



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 139/311 (44%), Gaps = 60/311 (19%)

Query: 165 KEMGVFGSIKTWNSALLGCI--KIDRTDLVWKLY----------HDLIESGYLIQAFCND 212
           K +G++G I   +  L+G +  +I   +  W+++          H+      L+  +   
Sbjct: 58  KSLGLYGDILVPD--LVGKVIHRIPDPNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKA 115

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPD 268
            +V + +   +  +++   P+  ++N L++ F +    KK      E+  + +A  R   
Sbjct: 116 RRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKDSGIAVLR--- 172

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             ++  V+ GLC   K   A+ VF D+    + P+ + YT +I GLCK   +  A  ++ 
Sbjct: 173 --SHNIVLRGLCSGGKISMAWEVFKDMSGI-FSPNLISYTIMIDGLCKSRKVDKAITLFK 229

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC--- 385
           +M+ K + P+  TY ++I G  +   ++EA  L +E   KG   T VTYNT+I GLC   
Sbjct: 230 QMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMIDGLCKCG 289

Query: 386 ---------------------------------LHGRTDEAYHLFEEMAQKGIFRDVITY 412
                                            L  R ++AY L+EEM   G   DV+TY
Sbjct: 290 RIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTY 349

Query: 413 NTLIQGYCKEG 423
           NTL+ G CK G
Sbjct: 350 NTLLDGLCKSG 360



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 4/191 (2%)

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           N L+S + + +          + +     PD  +Y  ++NG  K+    +A  +F ++K+
Sbjct: 106 NNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGEMKD 165

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLE 356
            G +     +  V+ GLC  G +  A +++ +M   G+  PN  +Y  MI G C+   ++
Sbjct: 166 SG-IAVLRSHNIVLRGLCSGGKISMAWEVFKDM--SGIFSPNLISYTIMIDGLCKSRKVD 222

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +A  L K+M+DK      VTY  LI GL    R  EAY LFEE   KG    V+TYNT+I
Sbjct: 223 KAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNTMI 282

Query: 417 QGYCKEGKIVN 427
            G CK G+I N
Sbjct: 283 DGLCKCGRIEN 293



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 36/187 (19%), Positives = 73/187 (39%), Gaps = 12/187 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS----PNPNSLELYIQCLCESGLIEE 156
           G SPD+V+ N L D L ++     AM+     G      PN  +  + I   C+   + +
Sbjct: 341 GCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGD 400

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------DLIESGYLIQA 208
           A     +++   +     T+ + +    K  R D   +L+         D +    ++  
Sbjct: 401 AVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELFESIGKTCKPDSVLFNTMLAG 460

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C   ++ +  +L  ++L+ G  P    +  L++ FC    +     + H M+     P+
Sbjct: 461 YCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520

Query: 269 NFTYEEV 275
               E V
Sbjct: 521 RHLAELV 527


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 165/374 (44%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           G +PD+ S + L   L   +  + A + +     D     P+  S    I    + G + 
Sbjct: 79  GCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVG 138

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLI 206
           +A+  F K+ + G+  ++ T NS + G  K+   D    +   +I+            LI
Sbjct: 139 KAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLI 198

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             + + G+ +E   +L+++  DG  P    +N LI   C+        E+ ++M+     
Sbjct: 199 HGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPK 258

Query: 267 PDNFTYEEVINGL-----------------------------------CKSRKRLEAYRV 291
           PD  TY  +++G                                    CK  +  EA   
Sbjct: 259 PDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLT 318

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F  +++ G++PD V YTTVI GLCK+G L DA   + +MI  GL PN  T+ ++IHG+  
Sbjct: 319 FIKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSM 378

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               E+A+ L  EM+D+G       +  +I  L   G+  EA  LF+ M + G   +V++
Sbjct: 379 YGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVS 438

Query: 412 YNTLIQGYCKEGKI 425
           YNT+I GY   G++
Sbjct: 439 YNTMIHGYFIAGEV 452



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/295 (30%), Positives = 136/295 (46%), Gaps = 29/295 (9%)

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P+  +  + I C C++G +   F A  ++ + G                          
Sbjct: 10  APDIATFGILISCCCDAGCLNLGFAALGQIIKTG-------------------------- 43

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYEL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           L  D +    L++  C   + S+   + LR++ E G  P+  +++ L+   C +K     
Sbjct: 44  LRADAVAFTPLLRTLCAKKRTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEA 103

Query: 254 SELLHTMV--ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +EL+H M     N  PD  +Y  VI+G  K     +AY +F  + + G  P+ V   +VI
Sbjct: 104 AELIHMMAEDGDNCPPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVI 163

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLCK+  +  A  +  +MI + ++PN  TYNS+IHGY       EA R+ KEM   G  
Sbjct: 164 DGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQR 223

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              VTYN LI  LC  G   EA  +F  M Q G   D  TY +L+ GY  EG +V
Sbjct: 224 PNVVTYNMLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLV 278



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 151/337 (44%), Gaps = 14/337 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEE 156
           +G  P++V+CN + D L + +A   A   L         PN  +    I     SG   E
Sbjct: 150 HGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTE 209

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESG---------YLI 206
           A     ++   G   ++ T+N  L+ C+ K        ++++ +I+SG          L+
Sbjct: 210 AVRILKEMSRDGQRPNVVTYN-MLIDCLCKSGFHAEAREIFNSMIQSGPKPDATTYGSLL 268

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +  +G + E   +   ++++G+   +  F+  I  +C+       S     M      
Sbjct: 269 HGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFM 328

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  VI+GLCK  +  +A   F  + + G  P+ + +TT+IHG    G    A ++
Sbjct: 329 PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEEL 388

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           ++EM+ +G+ P+   + +MI    +   + EA++L   M   G     V+YNT+I G  +
Sbjct: 389 FYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFI 448

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G   E   L ++M   G+    +T+NTL+ G    G
Sbjct: 449 AGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMG 485



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 119/283 (42%), Gaps = 48/283 (16%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +LVE    K   D +   G   N ++  + I   C+ G ++EA   F K++++G    I 
Sbjct: 276 NLVEMNNVK---DLMVQNGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIV 332

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           T+ + + G  KI R D               +  FC             Q+++DGL P  
Sbjct: 333 TYTTVIDGLCKIGRLDDA-------------MSRFC-------------QMIDDGLSPNI 366

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             F  LI  F     + +  EL + M+ R   PD   +  +I+ L K  K  EA ++F+ 
Sbjct: 367 ITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDL 426

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY----- 349
           +   G  P+ V Y T+IHG    G +G+  K+  +M+  GL P   T+N+++ G      
Sbjct: 427 MPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMVSMGL 486

Query: 350 --------------CRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
                         C    +E+   L +EML K     T+T N
Sbjct: 487 KPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITEN 529


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 177/383 (46%), Gaps = 17/383 (4%)

Query: 59  QTLLSDIPSFNFNDPLF----FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFD 114
            +LL D+ S  F   ++    +   L +QN +  ++  F  + S  G  PD+VS  ++ D
Sbjct: 104 HSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSK-GRDPDVVSYTIIID 162

Query: 115 SLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           +L  A+ F  A      L   G SP+  +    +  LC  G ++ A+     + + GV  
Sbjct: 163 ALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKV 222

Query: 172 SIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGYLIQAFCNDGKVSEGYELL 222
           +   +N+ + G  ++ R D   K+           DL+    L+   C +G V E   L+
Sbjct: 223 NSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLV 282

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
             +   G+ P+  ++N+L+  FC+     R   ++   +      D  +Y  VI   CK+
Sbjct: 283 ETMERSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKA 342

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           R+  + Y +F ++  +G  PD V +  +I    + G     +K+  EM    +LP+   Y
Sbjct: 343 RRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFY 402

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
            +++   C+   ++ A  + ++M++ G     ++YN L+ G C   R  +A HLF+EM  
Sbjct: 403 TAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQS 462

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KG++ D +TY  ++ G  +  KI
Sbjct: 463 KGLYPDEVTYKLIVGGLIRGKKI 485



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 159/339 (46%), Gaps = 12/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD+ + N   + L      + A++    + S G  P+  S  + I  LC +   +EA
Sbjct: 114 GFVPDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEA 173

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              + +L + G+    K   + ++G     R DL ++L   +I+ G          LI  
Sbjct: 174 AKVWRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDG 233

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G+V +  ++   +   G VP+   +N L++  CE+        L+ TM      PD
Sbjct: 234 FCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPD 293

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            ++Y E++ G CK+     A+ +  +  +   + D V Y TVI   CK        +++ 
Sbjct: 294 LYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFE 353

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KG+ P+  T+N +I  + R  +    K+L  EM         + Y  ++  LC +G
Sbjct: 354 EMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNG 413

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           + D A+ +F +M + G+  DVI+YN L+ G+CK  ++++
Sbjct: 414 KVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMD 452



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/273 (29%), Positives = 130/273 (47%), Gaps = 12/273 (4%)

Query: 110 NVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N L D          AM    F+  TG  P+  +  + +   CE G+++EA      ++ 
Sbjct: 228 NALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMER 287

Query: 167 MGVFGSIKTWNSALLGCIK---IDRTDLVW------KLYHDLIESGYLIQAFCNDGKVSE 217
            GV   + ++N  L G  K   +DR  L+       K   D++    +I AFC   +  +
Sbjct: 288 SGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRK 347

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           GYEL  ++   G+ P+   FN LI  F  + +   V +LL  M      PD   Y  V++
Sbjct: 348 GYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVD 407

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK+ K   A+ VF D+ E G  PD + Y  +++G CK   + DA  ++ EM  KGL P
Sbjct: 408 HLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYP 467

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           +E TY  ++ G  R   +  A R+  +M+++G+
Sbjct: 468 DEVTYKLIVGGLIRGKKISLACRVWDQMMERGF 500



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 140/294 (47%), Gaps = 13/294 (4%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-DLIESG 203
           I  L ++GLI +A   F ++ E         +N  +   ++  R  L    Y   +I  G
Sbjct: 17  ISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRHVIPRG 76

Query: 204 Y---------LIQAFC---NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
           +          I A C   N+  +   + LL  +   G VP+  AFN  ++  C +    
Sbjct: 77  FSLLPFTYSRFISALCSAPNNINLPLIHSLLLDMDSLGFVPDIWAFNTYLNLLCRQNRLE 136

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              EL H+M ++ R PD  +Y  +I+ LC +++  EA +V+  L ++G  PD      ++
Sbjct: 137 TALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALV 196

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            GLC  G +  A ++   +I  G+  N   YN++I G+CR+  +++A ++   M   G  
Sbjct: 197 VGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCV 256

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              VTYN L+   C  G  DEA  L E M + G+  D+ +YN L++G+CK   +
Sbjct: 257 PDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMV 310



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/227 (22%), Positives = 105/227 (46%), Gaps = 14/227 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PDL S N L     +A    RA  + ++ + + G   +  S    I   C++    +
Sbjct: 289 GVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMC-DVVSYNTVITAFCKARRTRK 347

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
            +  F ++   G+   + T+N  +   ++   T +V KL  ++ +   L         + 
Sbjct: 348 GYELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVD 407

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C +GKV   + + R ++E+G+ P+  ++N L++ FC+         L   M ++   P
Sbjct: 408 HLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYP 467

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           D  TY+ ++ GL + +K   A RV++ + ERG+  +  +  T+++ +
Sbjct: 468 DEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNRHLSETLVNAI 514


>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 814

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/359 (26%), Positives = 169/359 (47%), Gaps = 15/359 (4%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
           + N +  ++RF + +    G  P++V+ N +     +    + A++ LD   S G  P+ 
Sbjct: 292 RANRLEKALRFLERMQV-VGIVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDK 350

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
            S    +  LC+   I E      K+ KE G+     T+N+ +    K D  D       
Sbjct: 351 VSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLK 410

Query: 198 DLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA-FNKLISRFCEK 247
           D  E G+         ++ A C +G++SE  +L+ ++L  G  P +   +  +++ FC  
Sbjct: 411 DAEEKGFRIDKVGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRL 470

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
               +  +LL  M      P+  +Y  ++NGLC++ K LEA  + N  +E+ + P+++ Y
Sbjct: 471 GEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITY 530

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           + ++HGL K G L +A  +  EM+ KG  P     N ++   CR     EA++  +E L+
Sbjct: 531 SVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 590

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           KG     V + T+I G C +   D A  + ++M       DV TY TL+    K+G+I 
Sbjct: 591 KGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIA 649



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ ++   G++ +  ++L  +   G+ P     N  I  F       +    L  M    
Sbjct: 251 VMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVG 310

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +I G C   +  EA  + +D+  +G +PD V Y T++  LCK   + + R
Sbjct: 311 IVPNVVTYNCMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVR 370

Query: 325 KMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +  +M  + GL+ ++ TYN++IH   + D+ +EA    K+  +KG+    V Y+ ++  
Sbjct: 371 DLMKKMAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHA 430

Query: 384 LCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
           LC  GR  EA  L  EM  KG    DV+TY  ++ G+C+ G++
Sbjct: 431 LCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEV 473



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 76/323 (23%), Positives = 142/323 (43%), Gaps = 31/323 (9%)

Query: 104 PDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+   +   F  L E    K  +  + + G+ PN  S    +  LC +G   EA   
Sbjct: 455 PDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSYTALLNGLCRTGKSLEA--- 511

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
               +EM      + W+                    + I    L+     +GK+SE  +
Sbjct: 512 ----REMMNMSEEQWWSP-------------------NSITYSVLMHGLRKEGKLSEACD 548

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           ++R+++  G  P     N L+   C         + +   + +  A +   +  VI+G C
Sbjct: 549 VVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFC 608

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           ++ +   A  V +D+       D   YTT++  L K G + +A ++  +M+HKG+ P   
Sbjct: 609 QNDELDAALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPV 668

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY ++IH YC+++ +++   + ++M+ +   +T   YN +I  LC  G+ +EA  L  ++
Sbjct: 669 TYRTVIHRYCQMEKVDDLVAILEKMILRQKCKTI--YNQVIEKLCGLGKLEEADKLLGKV 726

Query: 401 AQKGIFRDVITYNTLIQGYCKEG 423
            +     D  T   L++GY K G
Sbjct: 727 LRTASRSDAKTCYALMEGYLKIG 749



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 89/403 (22%), Positives = 166/403 (41%), Gaps = 21/403 (5%)

Query: 40  YTEIAKQVCKITRTKPRWEQTLLSDIPSFN-FNDPLFFRE---FLKQQNNVLLSIRFFQW 95
           Y  + +  C + R +   E  LL D+PS     D + +     +L ++  ++      + 
Sbjct: 318 YNCMIRGYCDLHRVEEAIE--LLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKK 375

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESG 152
           +   +G   D V+ N L   L +      A+ FL   +  GF  +       +  LC+ G
Sbjct: 376 MAKEHGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEG 435

Query: 153 LIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
            + EA    +++   G     + T+ + + G  ++   D   KL   +   GY       
Sbjct: 436 RMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKKLLQIMHTHGYKPNTVSY 495

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             L+   C  GK  E  E++    E    P +  ++ L+    ++       +++  MV 
Sbjct: 496 TALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGKLSEACDVVREMVL 555

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   P       ++  LC+  +  EA +   +   +G   + V +TTVIHG C+   L  
Sbjct: 556 KGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDA 615

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  +M       + +TY +++    +   + EA  L K+ML KG   T VTY T+I 
Sbjct: 616 ALSVLDDMYLINKHADVFTYTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIH 675

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             C   + D+   + E+M  +   + +  YN +I+  C  GK+
Sbjct: 676 RYCQMEKVDDLVAILEKMILRQKCKTI--YNQVIEKLCGLGKL 716



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 105/238 (44%), Gaps = 1/238 (0%)

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            D  W+  HD +    +++             +L  +   G+     AF +++  +    
Sbjct: 200 ADRQWRYRHDPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAG 259

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                 ++L  M      P+       I+   ++ +  +A R    ++  G VP+ V Y 
Sbjct: 260 QLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 319

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-D 367
            +I G C +  + +A ++  +M  KG LP++ +Y +++   C+   + E + L K+M  +
Sbjct: 320 CMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 379

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G     VTYNTLI  L  H   DEA    ++  +KG   D + Y+ ++   CKEG++
Sbjct: 380 HGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHALCKEGRM 437



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 75/159 (47%)

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  ++  L K++    A RV   +K RG       +  V+    + G L DA K+ 
Sbjct: 209 DPMVYYSMLEVLSKTKMCQGARRVLVLMKRRGIYRTPEAFLRVMVSYSRAGQLRDALKVL 268

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G+ PN    N+ I  + R + LE+A R  + M   G     VTYN +I G C  
Sbjct: 269 TLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDL 328

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            R +EA  L ++M  KG   D ++Y T++   CKE +IV
Sbjct: 329 HRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIV 367



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 109/299 (36%), Gaps = 53/299 (17%)

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCE 150
           QW      +SP+ ++ +VL   L +      A D +      GF P P  + L +Q LC 
Sbjct: 521 QW------WSPNSITYSVLMHGLRKEGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCR 574

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIE 201
            G   EA     +    G   ++  + + + G  + D  D    +         + D+  
Sbjct: 575 DGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFT 634

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE---------------------------- 233
              L+ A    G+++E  EL++++L  G+ P                             
Sbjct: 635 YTTLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMI 694

Query: 234 -----NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
                 T +N++I + C         +LL  ++      D  T   ++ G  K    L A
Sbjct: 695 LRQKCKTIYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEGYLKIGVPLLA 754

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK-MWFEMIHKGL-LPNEYTYNSM 345
           Y+V   +  R  +PD  M   +   L   G   D    ++F ++   L +P+E T  S+
Sbjct: 755 YKVACRMFNRNLIPDVKMCEKLSKRLVVEGAGNDNNMLLYFSLVSDNLQIPSEATRLSL 813


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 97/322 (30%), Positives = 148/322 (45%), Gaps = 31/322 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD  + N+L + L +    ++    MD + + GFSP   +    I   C +G ++ A
Sbjct: 121 GSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAA 180

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                +++  G+  +  T+ +                          LIQ  C+ G+V  
Sbjct: 181 MDILDEMEHRGITPNTVTYTA--------------------------LIQGLCDCGEVER 214

Query: 218 GYELLRQVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
              +L+++   G    P    + +LI   C+K  F    E L  M+     P+N TY  +
Sbjct: 215 AILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTAL 274

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+GLC+    LEA  + N++   G   D V+Y ++I GLCKMG L  AR+M   M+ KG+
Sbjct: 275 IHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGV 334

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P+ +TY S+I G C    L+EA  L +EM  KG    +VTY TLI G     RTD A  
Sbjct: 335 APDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQ 394

Query: 396 LFEEMAQKGIFRDVITYNTLIQ 417
           L  EM   G+      Y  L +
Sbjct: 395 LVNEMKSNGLMPAGDIYKILFK 416



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC+ G I EA   F +++E G      T+N  + G  K  + ++   L  ++   G+
Sbjct: 98  INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGF 157

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    LI  FC  G+V    ++L ++   G+ P    +  LI   C+     R   
Sbjct: 158 SPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAIL 217

Query: 256 LLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           +L  M  R     P+  TY ++I+GLC+           +++   G  P+   YT +IHG
Sbjct: 218 VLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHG 277

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LC+ G   +A  +  EM+  G   +   YNS+I G C++  L+ A+ +   M++KG    
Sbjct: 278 LCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPD 337

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             TY +LI GLC  G  DEA  L +EM  KGI  + +TY TLI G+ +  +
Sbjct: 338 VFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADR 388



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 119/244 (48%), Gaps = 2/244 (0%)

Query: 184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           ++I R  L+     D+I     I   C  G+++E  E+ R++ E G  P++  +N LI+ 
Sbjct: 76  LRIYRPKLLNSQDTDVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILING 135

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C+         L+  M AR  +P   TY  +I+G C + +   A  + ++++ RG  P+
Sbjct: 136 LCKDAQLEMGVSLMDEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPN 195

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           TV YT +I GLC  G +  A  +  EM  +G    PN  TY  +IHG C+    E     
Sbjct: 196 TVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEF 255

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             EM+  G      TY  LI GLC  G   EA  L  EM   G   DV+ YN+LI G CK
Sbjct: 256 LDEMIISGCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCK 315

Query: 422 EGKI 425
            G++
Sbjct: 316 MGEL 319



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 67/193 (34%), Positives = 100/193 (51%), Gaps = 2/193 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           ++++ I+  C+K       E+   M  +  APD+FTY  +INGLCK  +      + +++
Sbjct: 93  SYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEM 152

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           + RG+ P  V YTT+IHG C  G +  A  +  EM H+G+ PN  TY ++I G C    +
Sbjct: 153 QARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEV 212

Query: 356 EEAKRLHKEMLDKGYG--ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           E A  + KEM  +G       VTY  LI GLC  G  +      +EM   G F +  TY 
Sbjct: 213 ERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYT 272

Query: 414 TLIQGYCKEGKIV 426
            LI G C++G  +
Sbjct: 273 ALIHGLCQKGSFL 285


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 169/370 (45%), Gaps = 47/370 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ ++ N + D  V+    +      D     G  PN  +  + +  LC +G ++E 
Sbjct: 224 GVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDET 283

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF-------- 209
                ++    +     T++    G  +   +  +  L+ + ++ G ++ A+        
Sbjct: 284 RALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNG 343

Query: 210 -CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGKV++  ++   ++  GLVP    +N LI+ +C+ ++      +   M +R+  PD
Sbjct: 344 LCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPD 403

Query: 269 NFTYEEVINGLCK----------------------------------SRKRLE-AYRVFN 293
           + TY  +INGLCK                                  +  +LE  + V +
Sbjct: 404 HITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLS 463

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D++++G   D + + +V+   CK G + +A  +  +MI+K + PN   YNS+I  Y    
Sbjct: 464 DMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESG 523

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           + E+A  L ++M + G   + VTYN L+ GLC   + DEA  L   +  +G+  DV++YN
Sbjct: 524 DTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYN 583

Query: 414 TLIQGYCKEG 423
           T+I   C +G
Sbjct: 584 TIISACCNKG 593



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 156/336 (46%), Gaps = 14/336 (4%)

Query: 104 PDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L SCN+L +SL+        + A   L + G  P+  +    +Q    +G ++ A   
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 161 FSKL--KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             ++   E        ++N  + G  +  +     K++ ++++ G          +I   
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G +  G+ L  Q+L DG  P    +N L+S  C          L+  M + +  PD 
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMASHSMLPDG 299

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           FTY  + +GL ++ +      +F +  ++G +      + +++GLCK G +  A++++  
Sbjct: 300 FTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQVFEM 359

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++H GL+P    YN++I+GYC++ +L  A  + ++M  +      +TYN LI GLC    
Sbjct: 360 LVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEM 419

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +A  L  EM + G+   V T+NTLI  Y   G++
Sbjct: 420 VTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQL 455



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 149/327 (45%), Gaps = 14/327 (4%)

Query: 108 SCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +C++L + L +    A+A +V  + L  TG  P        I   C+   +  AFC F +
Sbjct: 336 TCSILLNGLCKDGKVAKAKQV-FEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQ 394

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGK 214
           +K   +     T+N+ + G  K++       L  ++ +SG          LI A+   G+
Sbjct: 395 MKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQ 454

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + + + +L  + + G+  +  +F  ++  FC+         +L  M+ ++ AP+   Y  
Sbjct: 455 LEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNS 514

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+   +S    +A  +   +K  G     V Y  ++ GLC+   + +A ++ + + ++G
Sbjct: 515 IIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQG 574

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P+  +YN++I   C   + ++A  L +EM   G   T  T +TL++ L   GR  +  
Sbjct: 575 LRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDME 634

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+++M  K +      Y  ++  Y +
Sbjct: 635 CLYQQMLHKNVEPSSSIYGIMVDAYVR 661



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 152/342 (44%), Gaps = 15/342 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSP 136
           L +   V  + + F+ L  H G  P  V  N L +   + R  + A    + + S    P
Sbjct: 344 LCKDGKVAKAKQVFEML-VHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRP 402

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS---------ALLGCIKID 187
           +  +    I  LC+  ++ +A     ++++ GV  S++T+N+          L  C  + 
Sbjct: 403 DHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTV- 461

Query: 188 RTDLVWK-LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            +D+  K +  D+I  G +++AFC +GK+ E   +L  ++   + P    +N +I  + E
Sbjct: 462 LSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIE 521

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             +  +   L+  M     +    TY  ++ GLC+S +  EA  +   L+ +G  PD V 
Sbjct: 522 SGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVS 581

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y T+I   C  G    A ++  EM   G+ P   T ++++        + + + L+++ML
Sbjct: 582 YNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLYQQML 641

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            K    ++  Y  ++          +   L +EM++KGI  D
Sbjct: 642 HKNVEPSSSIYGIMVDAYVRCENDSKVASLKKEMSEKGIAFD 683


>gi|225450630|ref|XP_002278172.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial [Vitis vinifera]
 gi|296089757|emb|CBI39576.3| unnamed protein product [Vitis vinifera]
          Length = 586

 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 168/340 (49%), Gaps = 19/340 (5%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLEL 143
           L+IR F  + S +G  P + S N L ++LV+ + F +      +     G  PN  +  +
Sbjct: 188 LAIRTFLRIPS-FGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNI 246

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW--KLYHDLIE 201
            ++ LC+   I+ A     ++  MG   ++ T+ + L G   + + D+V   +++ ++++
Sbjct: 247 LVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGG--YVSKGDMVGARRVFGEILD 304

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+         L+  +C  G+  +  +++ ++ E+ + P +  +  +I  +C++K  G 
Sbjct: 305 RGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGE 364

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           V  LL  M+ +   P +     VI+ LC+  K   A  ++  L ++   PD  + +T+IH
Sbjct: 365 VLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIH 424

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            LCK G + +ARK+ F+   KG +P+  TYN++I G C    L EA RL   M++KG   
Sbjct: 425 WLCKEGKVWEARKL-FDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVP 483

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              TYN LI G C  G   E   + EEM   G   +  TY
Sbjct: 484 NAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATY 523



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 160/342 (46%), Gaps = 21/342 (6%)

Query: 54  KPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF------FQWLHSHYGFSPDLV 107
           +P+        IPSF     +  R F    N ++ + RF      F+     +G  P++ 
Sbjct: 185 RPKLAIRTFLRIPSFGLQPSV--RSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVF 242

Query: 108 SCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           +CN+L  +L +      A+  L+   + GF PN  +    +      G +  A   F ++
Sbjct: 243 TCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEI 302

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKV 215
            + G      T+   + G  K  R     K+  ++ E+         G +I+A+C + K 
Sbjct: 303 LDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKS 362

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E   LL  +LE   +P +    ++I   CE+       EL   ++ +N  PDN     +
Sbjct: 363 GEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTL 422

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ LCK  K  EA ++F++  E+G +P T+ Y  +I G+C+ G L +A ++W  M+ KG 
Sbjct: 423 IHWLCKEGKVWEARKLFDEF-EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGC 481

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           +PN +TYN +I G+C++ N  E  R+ +EMLD G      TY
Sbjct: 482 VPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATY 523



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/394 (22%), Positives = 172/394 (43%), Gaps = 50/394 (12%)

Query: 79  FLKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN 137
            + +Q N+ L+++ F      H  F+ +  +   + + L +ARAF+     +     S  
Sbjct: 107 MISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLISQLHKSQI 166

Query: 138 PNSLELYIQCLCESGLIEE---AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
                L+I  +   G       A   F ++   G+  S++++N+ L   ++  R DLV  
Sbjct: 167 KCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNKRFDLVHL 226

Query: 195 LYHD----------LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
           ++ +          +     L++A C    +     +L ++   G +P    +  ++  +
Sbjct: 227 MFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGY 286

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV------------- 291
             K +      +   ++ R   PD  TY  +++G CK  + ++A +V             
Sbjct: 287 VSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPND 346

Query: 292 ----------------------FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
                                  +D+ E+ Y+P + +   VI  LC+ G +  A ++W +
Sbjct: 347 VTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKK 406

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++ K   P+    +++IH  C+   + EA++L  E  +KG   +T+TYN LIAG+C  G 
Sbjct: 407 LLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDE-FEKGSIPSTLTYNALIAGMCEGGE 465

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             EA  L++ M +KG   +  TYN LI+G+CK G
Sbjct: 466 LPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVG 499


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 138/300 (46%), Gaps = 6/300 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G +P+       I+ LC  G   +A       +  G    +  +N+ + G  +  R D
Sbjct: 63  SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLD 122

Query: 191 LVWKLYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
              +L        D      LI+  C+ G+V +   LL  +L     P    +  L+   
Sbjct: 123 AARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAV 182

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+   FG+  ++L  M A+   P+  TY  +ING+C+  +  +A ++ N L   G+ PDT
Sbjct: 183 CKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDT 242

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V YTTV+ GLC      D   ++ EM+    +PNE T++ ++  +CR   +E A  +   
Sbjct: 243 VSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDR 302

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           M + G    T   N +I  +C  GR D+A+     M   G   D I+Y T+++G C+ G+
Sbjct: 303 MSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGR 362



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 154/334 (46%), Gaps = 15/334 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD  +   L   L +      A+  LD        P+  +  + ++ +C+S    +A   
Sbjct: 135 PDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKV 194

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             +++  G   +I T+N  + G  + DR D   ++ + L   G+         +++  C 
Sbjct: 195 LDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCA 254

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +  +   L  +++E+  VP    F+ L+  FC      R  E+L  M       +   
Sbjct: 255 AKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTL 314

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              VIN +CK  +  +A+   N++   G  PDT+ YTTV+ GLC+ G   DA+++  EM+
Sbjct: 315 CNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMV 374

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            K   PNE T+N+ I   C+   +++A  L ++M + G     VTYN L+ G C+ GR D
Sbjct: 375 RKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVD 434

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  LF  +  +    + ITY TL+ G C   ++
Sbjct: 435 SALELFNSLPCEP---NTITYTTLLTGLCHAERL 465



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 153/340 (45%), Gaps = 15/340 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFK-VAMDFLD--STGFSPNPNSLELYIQCLCESGLI 154
           S YGF PD VS   +   L  A+ ++ V + F +       PN  + ++ ++  C  G++
Sbjct: 234 SSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVTFDMLVRFFCRGGMV 293

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYL 205
           E A     ++ E G   +    N  +    K  R D  ++  +         D I    +
Sbjct: 294 ERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTV 353

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++  C  G+  +  ELL +++     P    FN  I   C+K    +   L+  M     
Sbjct: 354 LKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGC 413

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +    TY  ++NG C   +   A  +FN L      P+T+ YTT++ GLC    L  A +
Sbjct: 414 SVGIVTYNALVNGFCVQGRVDSALELFNSLPCE---PNTITYTTLLTGLCHAERLDAAAE 470

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM+      N  T+N ++  +C+   +EEA  L ++M++ G     +T+NTL+ G+ 
Sbjct: 471 LLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGIT 530

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               ++EA  L   +  KGI  D ITY++++    +E +I
Sbjct: 531 EDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRI 570



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 142/334 (42%), Gaps = 9/334 (2%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G   D+ + N L            A   + S    P+  +    I+ LC+ G + +A   
Sbjct: 100 GAPVDVFAYNTLVAGYCRYGRLDAARRLIASMPVPPDAYTYTPLIRGLCDRGRVGDALSL 159

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
              +       S+ T+   L    K        K+  ++   G          +I   C 
Sbjct: 160 LDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCR 219

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + +V +  ++L ++   G  P+  ++  ++   C  K +  V  L   MV  N  P+  T
Sbjct: 220 EDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNCVPNEVT 279

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           ++ ++   C+      A  V + + E G   +T +   VI+ +CK G + DA +    M 
Sbjct: 280 FDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMG 339

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  +Y +++ G CR    E+AK L  EM+ K      VT+NT I  LC  G  D
Sbjct: 340 SYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICILCQKGLID 399

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  L E+M + G    ++TYN L+ G+C +G++
Sbjct: 400 QAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRV 433



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 146/325 (44%), Gaps = 11/325 (3%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           F++L++   YG SPD +S   +   L  A  ++ A + L+        PN  +   +I  
Sbjct: 332 FEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNTFICI 391

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL------IE 201
           LC+ GLI++A     ++ E G    I T+N+ + G     R D   +L++ L      I 
Sbjct: 392 LCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELFNSLPCEPNTIT 451

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              L+   C+  ++    ELL +++++        FN L+S FC+K       EL+  M+
Sbjct: 452 YTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIELVQQMM 511

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P+  T+  +++G+ +     EA  + + L  +G   DT+ Y++++  L +   + 
Sbjct: 512 EHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSREDRIE 571

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A +M+  +   G+ P    YN ++   C+    + A      M+         TY  LI
Sbjct: 572 EAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNESTYVILI 631

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIF 406
            GL   G   EA ++  E+  +G+ 
Sbjct: 632 EGLAREGLLKEARYVLSELCSRGVL 656



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 95/210 (45%), Gaps = 3/210 (1%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           ++E   L+ +    G  P+     KLI   C +      + +L T        D F Y  
Sbjct: 51  LAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNT 110

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           ++ G C+   RL+A R    +      PD   YT +I GLC  G +GDA  +  +M+ + 
Sbjct: 111 LVAGYCRY-GRLDAARRL--IASMPVPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRE 167

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             P+  TY  ++   C+     +A ++  EM  KG     VTYN +I G+C   R D+A 
Sbjct: 168 CQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDAR 227

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +   ++  G   D ++Y T+++G C   +
Sbjct: 228 QILNRLSSYGFQPDTVSYTTVLKGLCAAKR 257



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 94/194 (48%), Gaps = 7/194 (3%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P ++   +LI+R     +    + L+    +R  APD +   ++I  LC+  +  +A RV
Sbjct: 37  PASSRLRRLIAR----DDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARV 92

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
               +  G   D   Y T++ G C+ G L  AR++   M    + P+ YTY  +I G C 
Sbjct: 93  LRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASM---PVPPDAYTYTPLIRGLCD 149

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              + +A  L  +ML +    + VTY  L+  +C      +A  + +EM  KG   +++T
Sbjct: 150 RGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVT 209

Query: 412 YNTLIQGYCKEGKI 425
           YN +I G C+E ++
Sbjct: 210 YNVIINGMCREDRV 223



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/215 (20%), Positives = 93/215 (43%), Gaps = 12/215 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEEAFCA 160
           P+ ++   L   L  A     A + L     +  P    +  + +   C+ G +EEA   
Sbjct: 447 PNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFCQKGFVEEAIEL 506

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++ E G   ++ T+N+ L G  +   ++   +L H L+  G          ++     
Sbjct: 507 VQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVSKGISLDTITYSSIVDVLSR 566

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + ++ E  ++   V + G+ P+   +NK++S  C++    R  +    MV+ +  P+  T
Sbjct: 567 EDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAIDFFAHMVSNSCMPNEST 626

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           Y  +I GL +     EA  V ++L  RG +  +++
Sbjct: 627 YVILIEGLAREGLLKEARYVLSELCSRGVLSKSLI 661


>gi|356533985|ref|XP_003535538.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like, partial [Glycine max]
          Length = 594

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/334 (28%), Positives = 154/334 (46%), Gaps = 13/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARA----FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           PD+V+ N L D   + R     F++  +     G  PN  +  + ++   + G I EA  
Sbjct: 170 PDVVTYNTLIDGCFKWRGSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASD 229

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
           A  K+ E GV     T+N+ + G  K  +    +++  ++   G          ++   C
Sbjct: 230 AVVKMVESGVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLC 289

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            + K  E YEL  +  + G + +   +  LI  + + K   +  +L   M  R   P   
Sbjct: 290 MEKKPEEAYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVV 349

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +Y  +I GLC S K  +A    N+L E+G VPD V    +IHG C  G +  A +   +M
Sbjct: 350 SYNPLIRGLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKM 409

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +     P+ +T N ++ G CR+D LE+A +L    + K      VTYNT+I+ LC  GR 
Sbjct: 410 VGNSFKPDIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRL 469

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           DEA+ L  +M  K    D  TYN +++     G+
Sbjct: 470 DEAFDLMTDMEVKKFEPDQYTYNAIVRALTHAGR 503



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 143/282 (50%), Gaps = 27/282 (9%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           ++ LC+ G I+EA     +++ + +   + T+N+ + GC K       W+          
Sbjct: 144 VKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFK-------WR---------- 186

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
                      +EG+ LL ++   G V P     N ++  F ++      S+ +  MV  
Sbjct: 187 ---------GSTEGFRLLEEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVES 237

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             +PD FTY  +ING CK+ K  EA+R+ +++  +G  PD     T++H LC      +A
Sbjct: 238 GVSPDCFTYNTMINGFCKAGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEA 297

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  +   +G + +E TY ++I GY +    ++A +L +EM  +G   + V+YN LI G
Sbjct: 298 YELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRG 357

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LCL G+TD+A     E+ +KG+  D ++ N +I GYC EG +
Sbjct: 358 LCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMV 399



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 165/352 (46%), Gaps = 26/352 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SPD  + N + +   +A     AF++ MD +   G  P+  +L   +  LC     EE
Sbjct: 238 GVSPDCFTYNTMINGFCKAGKLGEAFRM-MDEMARKGLKPDICTLNTMLHTLCMEKKPEE 296

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A+    K ++ G      T+ + ++G  K  + D   KL+ ++ + G          LI+
Sbjct: 297 AYELTVKARKRGYILDEVTYGTLIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIR 356

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  GK  +  + L ++LE GLVP+  + N +I  +C +    +  +  + MV  +  P
Sbjct: 357 GLCLSGKTDQAVDKLNELLEKGLVPDEVSCNIIIHGYCWEGMVDKAFQFHNKMVGNSFKP 416

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D FT   ++ GLC+     +A+++FN    +    D V Y T+I  LCK G L +A  + 
Sbjct: 417 DIFTRNILLRGLCRVDMLEKAFKLFNSWISKQNSVDVVTYNTMISYLCKEGRLDEAFDLM 476

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT------------V 375
            +M  K   P++YTYN+++         EEA++   ++ + G    T            +
Sbjct: 477 TDMEVKKFEPDQYTYNAIVRALTHAGRTEEAEKFMSKLSETGQAVKTHDTSQELDASSDI 536

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            Y+  I+ LC  G+  EA  LF+E  QKG+  +  TY  L+ G+ K  K ++
Sbjct: 537 MYSQQISDLCTQGKYKEAMKLFQESEQKGVSLNKYTYIKLMDGFLKRRKSIS 588



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 101/225 (44%), Gaps = 36/225 (16%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +N L+   C++        +   M +    PD  TY  +I+G  K R   E +R+  ++
Sbjct: 139 TYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLLEEM 198

Query: 296 KERGYV------------------------------------PDTVMYTTVIHGLCKMGW 319
           K RG V                                    PD   Y T+I+G CK G 
Sbjct: 199 KSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCKAGK 258

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           LG+A +M  EM  KGL P+  T N+M+H  C     EEA  L  +   +GY    VTY T
Sbjct: 259 LGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVTYGT 318

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LI G     + D+A  L+EEM ++GI   V++YN LI+G C  GK
Sbjct: 319 LIMGYFKGKQEDKALKLWEEMKKRGIVPSVVSYNPLIRGLCLSGK 363



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 89/190 (46%), Gaps = 36/190 (18%)

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----------- 316
           D +TY  ++ GLC   K  EA RV ++++    +PD V Y T+I G  K           
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195

Query: 317 -------------------MGWLG------DARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
                              + W G      +A     +M+  G+ P+ +TYN+MI+G+C+
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCK 255

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              L EA R+  EM  KG      T NT++  LC+  + +EAY L  +  ++G   D +T
Sbjct: 256 AGKLGEAFRMMDEMARKGLKPDICTLNTMLHTLCMEKKPEEAYELTVKARKRGYILDEVT 315

Query: 412 YNTLIQGYCK 421
           Y TLI GY K
Sbjct: 316 YGTLIMGYFK 325



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 67/124 (54%), Gaps = 1/124 (0%)

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   Y T++ GLC  G + +A ++  EM    L+P+  TYN++I G  +     E  RL 
Sbjct: 136 DVWTYNTLVKGLCDEGKIDEAIRVRDEMESLKLIPDVVTYNTLIDGCFKWRGSTEGFRLL 195

Query: 363 KEMLDKGYGE-TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +EM  +G  E   VT+N ++      G+ +EA     +M + G+  D  TYNT+I G+CK
Sbjct: 196 EEMKSRGGVEPNAVTHNIMVKWFGKEGKINEASDAVVKMVESGVSPDCFTYNTMINGFCK 255

Query: 422 EGKI 425
            GK+
Sbjct: 256 AGKL 259


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 169/374 (45%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSP-NPNSLELYIQCLCESGLIE 155
           G  PDL S  +L   L + +  + A+D L    D  G  P +  +    I  L   G ++
Sbjct: 165 GCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLD 224

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A+  F  + + G    + T++S +    K    D   +++  ++++G          L+
Sbjct: 225 KAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLV 284

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C+ GK  E   + +++   G+ P+   +  L+   C+        ++  ++V R   
Sbjct: 285 HGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHK 344

Query: 267 PDNFTYEEVINGLC-----------------------------------KSRKRLEAYRV 291
           PD+ TY  +++G                                     K  K  EA  V
Sbjct: 345 PDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLV 404

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F++++++G  PD V Y TV+  LC  G + DA   +  +  +GL PN   + ++IHG C 
Sbjct: 405 FSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCT 464

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D  ++ + L  EM+D+G    T+ +N ++  LC  GR  EA +LF+ M + GI  +  T
Sbjct: 465 CDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNT 524

Query: 412 YNTLIQGYCKEGKI 425
           YNTLI GYC +GK+
Sbjct: 525 YNTLIDGYCLDGKM 538



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ + +  +L + +A   A      +   G  P+       +   C SG  +EA
Sbjct: 237 GPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEA 296

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F K+   GV   + T+ + +    K  ++    K++  L++ G+         L+  
Sbjct: 297 IGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHG 356

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +G + E ++LL  +++ G+   +  FN ++  + +         +   M  +   PD
Sbjct: 357 YATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPD 416

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  V++ LC + +  +A   FN LK  G  P+ V++TT+IHGLC         ++ F
Sbjct: 417 IVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAF 476

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI +G+  +   +N+++   C+   + EAK L   M+  G    T TYNTLI G CL G
Sbjct: 477 EMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDG 536

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA  L   M   G+    +TYNT+I GY + G+I
Sbjct: 537 KMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRI 573



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 145/285 (50%), Gaps = 15/285 (5%)

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           A   F+++   G   +   I T+   +  C ++ R DL +     +I +G          
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSP 139

Query: 205 LIQAFCNDGKVSEGYEL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA- 262
           L++  C+  + S+  ++ LR++ E G  P+  ++  L+   C+ K   +  +LLH M   
Sbjct: 140 LLKGLCDRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADH 199

Query: 263 RNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           + R P D   Y  VINGL +  +  +AY +F+ + +RG  PD V Y+++I  L K   + 
Sbjct: 200 KGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMD 259

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A +++  M+  G++P+   Y S++HGYC     +EA  + K+M   G     VTY  L+
Sbjct: 260 KATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALM 319

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             LC +G++ EA  +F+ + ++G   D  TY TL+ GY  EG +V
Sbjct: 320 DYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALV 364



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 144/330 (43%), Gaps = 21/330 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSL------VEARAFKVAMDFLDSTGFSPNPNSLE 142
           +I  F+ +  H G  PD+V+   L D L       EAR      D L   G  P+  +  
Sbjct: 296 AIGIFKKMCRH-GVEPDVVTYTALMDYLCKNGKSTEARKI---FDSLVKRGHKPDSTTYG 351

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVWK---- 194
             +      G + E       + + G+      +N  ++G      K+D   LV+     
Sbjct: 352 TLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFN-MIMGAYAKHNKVDEALLVFSNMRQ 410

Query: 195 --LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             L  D++  G ++   C  G+V +       +  +GL P    F  LI   C    + +
Sbjct: 411 QGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDK 470

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           V EL   M+ R    D   +  ++  LCK  + +EA  +F+ +   G  P+T  Y T+I 
Sbjct: 471 VEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLID 530

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G C  G + +A K+   M+  G+ P++ TYN++I+GY +   +E+   L +EM  KG   
Sbjct: 531 GYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNP 590

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
             VTY  L+ GL   GRT  A  L+  M +
Sbjct: 591 GIVTYEMLLQGLFQAGRTVAAKELYLRMIK 620


>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 755

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 178/371 (47%), Gaps = 19/371 (5%)

Query: 64  DIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           DI +F  F D L    FL++  +VL  ++ F       G S D VS + + D   +    
Sbjct: 372 DIVAFTVFIDKLCKAGFLREATSVLFKLKLF-------GISQDSVSVSSVIDGFCKVGKP 424

Query: 123 KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           + A+  + S    PN      ++  +C +G +  A   F ++ E+G+      + + + G
Sbjct: 425 EEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDG 484

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
              + RTD  ++ +  L++SG          LI A    G +S+   + R +  +GL P+
Sbjct: 485 YCTLGRTDKAFQFFGALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTEGLHPD 544

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N L+  + +     +V EL+  M +   +PD  TY  +I+ +       EA  + +
Sbjct: 545 VVTYNNLMYGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIIS 604

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           +L  RG+VP  + +T VI GL K G   +A  +WF M    + P+  T ++++HGYCR  
Sbjct: 605 ELIRRGFVPSALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQ 664

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +E+A  L  ++LD G     V YNTLI G C  G  ++A  L   M Q+G+  +  T++
Sbjct: 665 RMEKAIVLFDKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHH 724

Query: 414 TLIQGYCKEGK 424
            L+ G   EGK
Sbjct: 725 ALVVGL--EGK 733



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/221 (24%), Positives = 97/221 (43%), Gaps = 5/221 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI     + KV    +L  ++ + G+ P       L+             E +  M++R 
Sbjct: 274 LIDCCIKERKVDMALKLTYKIDQFGIFPSRGVCISLVEEILRAHGLELAREFVEHMLSRG 333

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
           R  +       I   C      + + +   +K+ G  PD V +T  I  LCK G+L +A 
Sbjct: 334 RHLNAALLSLFIRKYCSDGYFDKGWELLMGMKDYGIRPDIVAFTVFIDKLCKAGFLREAT 393

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLHKEMLDKGYGETTVTYNTLIAG 383
            + F++   G+  +  + +S+I G+C++   EEA K +H   L          Y++ ++ 
Sbjct: 394 SVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP----NIFVYSSFLSN 449

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +C  G    A  +F+E+ + G+  D   Y T+I GYC  G+
Sbjct: 450 ICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGR 490


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEE 156
           +G  P   +C     +L +   ++ A   F+D  + G  PN  +    I  LC SGL++ 
Sbjct: 314 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKV 373

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   F ++   GVF +  T+N+ +   ++  R    + + +         +++    +I+
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIK 433

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G   +   ++  +L+ G       +N +I  +C+  N      +L  M      P
Sbjct: 434 GYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D ++Y E+I G CK  K   A+ +FN++ + G  P+ V YT +I G CK   L  A  + 
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 553

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  PN  TYN +IHG  + +N   A+ L K M+++G     VTY  +I GLC +
Sbjct: 554 EHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKN 613

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T  A  +F +M ++G   +++TY++LI+   +EGK+
Sbjct: 614 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV 651



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC+SG + EAF    ++   G+  +  T    ++    +   +  
Sbjct: 280 GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDA 339

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           W+L+ D+   G          LI   C  G +     L  ++  DG+ P    +N LI+ 
Sbjct: 340 WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINI 399

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             E +       +L+ M     +P+  TY E+I G C      +A  V N++ +RG+  +
Sbjct: 400 LVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 459

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y T+I G C  G    A ++   M   G  P+E++Y  +I G+C+I  +E A  L  
Sbjct: 460 LVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN 519

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EM+D G     VTY  LI G C   + D A  L E M + G   +V TYN LI G  K+
Sbjct: 520 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +   L   L  +   KVA+     +   G  PN  +    I  L E+  I+ A
Sbjct: 350 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   + +   G   +I T+N  + G   +        + +++++ G+         +I+ 
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C+ G  +    +L  + + G  P+  ++ +LI  FC+         L + MV     P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  K   A  +   +K  G  P+   Y  +IHGL K      A ++  
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G+ PN  TY +MI G C+  +   A  +  +M+++G     +TY++LI  L   G
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +EA +LF E+ + G+  D ITY  +I+ Y   GK+
Sbjct: 650 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 686



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 158/344 (45%), Gaps = 15/344 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELY 144
           ++I  F  + S  G  P+ V+ N L + LVE R  K   V ++ +   G SPN  +    
Sbjct: 373 VAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I+  C  G  ++A    + + + G   ++ T+N+ + G      T    ++  DL+  G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGG 490

Query: 204 ---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     LI  FC   K+   + L  ++++DGL P    +  LI  +C+ +     +
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LL  M      P+  TY  +I+GL K      A  +   + E G  P+ V YT +I GL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G    A +M+ +MI +G LPN  TY+S+I    +   +EEA+ L  E+   G     
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 670

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +TY  +I    + G+ + A++    M + G    + TY  LI+G
Sbjct: 671 ITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKG 714



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 13/266 (4%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
           MG+F     +++ L+   ++  T  V   YH ++  G          +I A C DG V++
Sbjct: 178 MGLFA----YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVAD 233

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              ++++V E  + P+   +  +I   C K +     ++ + M      P+  TY  +IN
Sbjct: 234 AETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLIN 293

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC S +  EA+ +  ++   G +P     T  I  LC MG   DA +++ +M +KG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N YTY ++I G C    L+ A  L   M   G    TVTYN LI  L  + R   A+ + 
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
             M + G   +++TYN +I+GYC  G
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILG 439



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G  PN       I  LC+ G + +A     K+ E  +     T+ S +LG  +    D
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              ++++ + + G          LI   C+ G+V+E ++L+R+++  G++P        I
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+   +     L   M  +   P+ +TY  +I+GLC S     A  +F+ +   G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 387

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+TV Y  +I+ L +   +  A  +   M   G  PN  TYN MI GYC + + ++A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              ML +G+    VTYNT+I G C  G T  A  + + M   G   D  +Y  LI G+CK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 422 EGKI 425
             K+
Sbjct: 508 ISKM 511



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 35/248 (14%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +LI++  +   ++     L  + + GL     A++ L+           V +  H M++ 
Sbjct: 150 HLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 264 NRAPDNFTYEEVINGLCKS----------RKRLE-------------------------A 288
              P+   Y  VIN LCK           +K  E                         A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +VFN + + G  P+TV Y+T+I+GLC  G + +A  +  EMI  G+LP  +T    I  
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C +   E+A RL  +M +KG      TY  LI+GLC+ G    A  LF  M++ G+F +
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 389

Query: 409 VITYNTLI 416
            +TYN LI
Sbjct: 390 TVTYNALI 397



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 140/359 (38%), Gaps = 36/359 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+   L D   +      A   L+    +G  PN  +  + I  L +      A
Sbjct: 525 GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + E G+F ++ T+ + + G  K   T L  ++++ +IE G          LI+A
Sbjct: 585 EELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRA 644

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GKV E   L  ++   GL+P+   + K+I  +            L  M+     P 
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPT 704

Query: 269 NFTYEEVINGLCK----SRKRLEA-----------YRVFND---------LKERGYVPDT 304
            +TY  +I GL      + +RL A           Y+  +          L E       
Sbjct: 705 LWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSV 764

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +   ++  L   G   +A ++   MI +GL P++  YNS++    R+ N++ A  + K 
Sbjct: 765 QVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKH 824

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           M  +G       Y  LI  LC   R  EA   FE M  +    D +    LI G  ++G
Sbjct: 825 MSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 1/147 (0%)

Query: 280 CKSRKRLEAYRVFND-LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           C S++ +     F D L + G       Y+ ++  L ++G        +  M+ +G+ PN
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YN++I+  C+  N+ +A+ + K++ +      T TY ++I G C     D A  +F 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +MA++G   + +TY+TLI G C  G++
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLCDSGRV 301



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 21/305 (6%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AF +  + +D  G  PN  +    I   C+   ++ A      +K  G   +++T+N  +
Sbjct: 514 AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 572

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K +      +L   +IE G          +I   C +G  S   E+  +++E G +
Sbjct: 573 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 632

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    ++ LI    ++        L   +      PD  TY ++I     S K   A+  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + G  P    Y  +I GL     L D R           LP+     S   GY  
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR--------LAALPDVVPNCSF--GYQT 742

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D  +    +  ++ +   G +    N L++ L   GR  EA  L   M  +G+  D   
Sbjct: 743 TDQ-DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 801

Query: 412 YNTLI 416
           YN+L+
Sbjct: 802 YNSLL 806



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 45/193 (23%), Positives = 75/193 (38%), Gaps = 7/193 (3%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+      G+  E  ELL  ++  GL P+  A+N L+      +N      +   M  + 
Sbjct: 770 LVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 829

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                  Y+E+I  LC+  +R EA   F ++  R + PD V+   +I GL + G+    +
Sbjct: 830 CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGY----K 885

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  E +H   +     Y    H Y  +      KR  K +          T +T   G 
Sbjct: 886 DLCMEFLH---IMETRRYMPSFHIYTILAREASKKRSWKHVAGCITKVKRATCSTSCTGQ 942

Query: 385 CLHGRTDEAYHLF 397
           C        Y+L+
Sbjct: 943 CFCSSLSRLYYLY 955


>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
           [Vitis vinifera]
          Length = 691

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 35/341 (10%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           ++  FQ +H  +G  P + S N L ++L+E+  +  A  F    ++ G SPN  +  + I
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK--LYHDLIESG 203
           +  C           F K KE+                      + +W+     D+   G
Sbjct: 157 KISCRKK-------QFDKAKEL---------------------LNWMWEQGFSPDVFSYG 188

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV-A 262
            LI +   +G +S+  +L  ++ E G+ P+   +N LI  F +K +    SE+   ++  
Sbjct: 189 TLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG 248

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
            +  P+  +Y  +INGLCK  K  E++ +++ +K+     D   Y+T+IHGLC  G L  
Sbjct: 249 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG 308

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM   G+ P+   YN+M++GY R   +EE   L K M  +G   T V+YN LI 
Sbjct: 309 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIR 367

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           GL  + + DEA  ++E + +K    D +TY  L+ G CK G
Sbjct: 368 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNG 408



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 151/334 (45%), Gaps = 16/334 (4%)

Query: 106 LVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
           +VS N+L   L E      A+   + L       +  +  + +  LC++G + +A     
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 418

Query: 163 KLKEMGVFGSIKT--WNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
           +  E G  G + T  ++S + G  +  R D V  +   + + G          +I  F  
Sbjct: 419 E-AENGR-GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVR 476

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K+ +       ++  G  P    +N LI+   + + F     L+  M+ +   P+  T
Sbjct: 477 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMIT 536

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLC+ +K   A  ++    E+G+ PD  M+  +IHGLC  G + DA +++ EM 
Sbjct: 537 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +  +PN  T+N+++ G+ ++ + E A ++   +L  G     ++YN  + GLC   R  
Sbjct: 597 QRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGPQPDIISYNITLKGLCSCHRIS 656

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A     +   +G+    IT+N L++     G +
Sbjct: 657 DAVGFLNDAVDRGVLPTAITWNILVRAVLDNGAL 690



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 168/373 (45%), Gaps = 70/373 (18%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           RF  + H+ Y F   L     LFD  + A   ++           P   +L + I+   +
Sbjct: 35  RFPGYSHTPYVFHHIL---KRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTV-IKAYAK 90

Query: 151 SGLIEEAFCAFSKLKEM-GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           + + ++A   F ++ E+ G    I+++NS                L + LIES       
Sbjct: 91  NSMPDQALDIFQRMHEIFGCQPGIRSYNS----------------LLNALIES------- 127

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            N    +E + L  + +  GL P    +N LI   C KK F +  ELL+ M  +  +PD 
Sbjct: 128 -NKWDEAESFFLYFETM--GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDV 184

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW-- 327
           F+Y  +IN L K+    +A ++F+++ ERG  PD   Y  +I G  K G + +A ++W  
Sbjct: 185 FSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWER 244

Query: 328 ------------------------------FEMIHKGLLPNE-----YTYNSMIHGYCRI 352
                                         FE+ H+ +  NE     YTY+++IHG C  
Sbjct: 245 LLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHR-MKKNERGQDLYTYSTLIHGLCGS 303

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            NL+ A R++KEM + G     V YNT++ G    GR +E   L++ M ++G  R V++Y
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSY 362

Query: 413 NTLIQGYCKEGKI 425
           N LI+G  +  K+
Sbjct: 363 NILIRGLFENAKV 375



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 236 AFNKLISRFCEKK---NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
            F+ ++ R  + K   +  R+ EL+ T   + + P++     VI    K+    +A  +F
Sbjct: 45  VFHHILKRLFDPKLVAHVSRIVELIRTQ--KCKCPEDVALT-VIKAYAKNSMPDQALDIF 101

Query: 293 NDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             + E  G  P    Y ++++ L +     +A   +      GL PN  TYN +I   CR
Sbjct: 102 QRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCR 161

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               ++AK L   M ++G+     +Y TLI  L  +G   +A  LF+EM ++G+  DV  
Sbjct: 162 KKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 412 YNTLIQGYCKEGKIVN 427
           YN LI G+ K+G I+N
Sbjct: 222 YNILIDGFFKKGDILN 237


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 165/344 (47%), Gaps = 21/344 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           G  PD +S + +  SL E    + A+D L      S G SPN  S    I      G + 
Sbjct: 185 GVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVS 244

Query: 156 EAFCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
           +A   F ++ + GV   + T++S   AL     +D+ +LV +    +I +G+        
Sbjct: 245 KACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLR---QMISNGFEPDKVTYN 301

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I  +   G+  E   + R++   GL+P+    N  +S  C+       +E   +M A+
Sbjct: 302 CMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAK 361

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD  TY  +++G       ++   +FN ++  G V D  +Y  +I    K G + +A
Sbjct: 362 GHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEA 421

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +G++P+ +TY ++I  + R+  L +A     +M+  G    T+ YN+LI G
Sbjct: 422 MLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQG 481

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKIV 426
            C+HG   +A  L  EM  +GI R + + +N++I   CKEG++V
Sbjct: 482 FCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVV 525



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 143/268 (53%), Gaps = 12/268 (4%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYE-L 221
           ++ T+N  +  C +  R  + + L+          D+I +  L++  C+  +  +    L
Sbjct: 118 TVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVL 177

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGL 279
           L ++ E G+ P+  +++ ++   CE     R  +LLHTMV ++   +P+  +Y  VI+G 
Sbjct: 178 LHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGGCSPNVVSYNTVIHGF 237

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            +  +  +A  +F+++ ++G VPD V Y++ I  LCK   +  A  +  +MI  G  P++
Sbjct: 238 FREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDK 297

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN MIHGY  +   +E   + +EM  +G      T N+ ++ LC HG++ EA   F+ 
Sbjct: 298 VTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDS 357

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           MA KG   D++TY+ L+ GY  EG +V+
Sbjct: 358 MAAKGHKPDLVTYSVLLHGYAAEGYVVD 385



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 156/334 (46%), Gaps = 13/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ +CN    SL +    K A +F DS    G  P+  +  + +      G + + 
Sbjct: 327 GLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDM 386

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F+ ++  G+      +N  +    K    D    ++  + E G +         I A
Sbjct: 387 LNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAA 446

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-P 267
           F   G++++  +   Q++  GL P+   +N LI  FC   N  +  EL+  M++R    P
Sbjct: 447 FSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRP 506

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  +IN LCK  + +EA  +F+ +   G  PD + + ++I G   +G +  A  + 
Sbjct: 507 NTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVL 566

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI  G+ P+  TY++++ GYCR   +++   L +EML KG   TT+TY  ++ GL   
Sbjct: 567 DAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFND 626

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           GRT  A  +  EM + G   D+ T   ++ G C+
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCR 660



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/341 (25%), Positives = 154/341 (45%), Gaps = 15/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G   D++  N+L   L  A+    A  V +  +   G  P+  S    ++ LCE    + 
Sbjct: 149 GLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQR 208

Query: 157 AFCAFSKL--KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------- 205
           A      +  K  G   ++ ++N+ + G  +         L+H++++ G +         
Sbjct: 209 ALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSY 268

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I A C    + +   +LRQ++ +G  P+   +N +I  +     +   + +   M  R  
Sbjct: 269 IDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGL 328

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD FT    ++ LCK  K  EA   F+ +  +G+ PD V Y+ ++HG    G++ D   
Sbjct: 329 MPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLN 388

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M   G++ +   YN +I  Y +   ++EA  +  +M ++G      TY T+IA   
Sbjct: 389 LFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFS 448

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             GR  +A   F +M   G+  D I YN+LIQG+C  G +V
Sbjct: 449 RMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLV 489



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 101/425 (23%), Positives = 185/425 (43%), Gaps = 27/425 (6%)

Query: 11  ILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNF 70
           +LRQ   N   P+    N  I        + E A    ++TR      + L+ DI  F  
Sbjct: 284 VLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTR------RGLMPDI--FTC 335

Query: 71  NDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---- 126
           N    +   L +      +  FF  + +  G  PDLV+ +VL      A  + V M    
Sbjct: 336 NS---YMSSLCKHGKSKEAAEFFDSMAAK-GHKPDLVTYSVLLHGYA-AEGYVVDMLNLF 390

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           + ++  G   + +   + I    + G+++EA   F++++E GV     T+ + +    ++
Sbjct: 391 NSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRM 450

Query: 187 DRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            R       ++ +I  G          LIQ FC  G + +  EL+ +++  G+   NT F
Sbjct: 451 GRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVF 510

Query: 238 -NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            N +I+  C++       ++   ++     PD  T+  +I+G     K  +A+ V + + 
Sbjct: 511 FNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMI 570

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  PD V Y+ ++ G C+ G + D   ++ EM+ KG+ P   TY  ++HG        
Sbjct: 571 SVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTV 630

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            AK++  EM++ G      T   ++ GLC +   DEA  LF+++    +  ++   NT+I
Sbjct: 631 GAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMI 690

Query: 417 QGYCK 421
               K
Sbjct: 691 DAMYK 695



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/429 (21%), Positives = 181/429 (42%), Gaps = 32/429 (7%)

Query: 19  FQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFRE 78
           F     ++R  ++ T+++  L+ E+ +Q   +         T L+  PS           
Sbjct: 39  FATATERVRAGTLSTEDTHHLFDELLRQTTPVPERALNGFLTALARAPSSA--------- 89

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFS----PDLVSCNVLFDSLVEAR----AFKVAMDFLD 130
               ++   L++  F  +           P + + N+L D    A      F +   FL 
Sbjct: 90  --TCRDGPSLAVALFNRICREEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFL- 146

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAF-CAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
            TG   +     + ++CLC +   ++A      ++ E+GV     ++++ L    +  R+
Sbjct: 147 KTGLKTDVIVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRS 206

Query: 190 DLVWKLYHDLIE-SG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
                L H +++ SG           +I  F  +G+VS+   L  ++++ G+VP+   ++
Sbjct: 207 QRALDLLHTMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMMQQGVVPDVVTYS 266

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
             I   C+ +   +   +L  M++    PD  TY  +I+G     +  E   +F ++  R
Sbjct: 267 SYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRR 326

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G +PD     + +  LCK G   +A + +  M  KG  P+  TY+ ++HGY     + + 
Sbjct: 327 GLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDM 386

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L   M   G       YN LI      G  DEA  +F +M ++G+  D  TY T+I  
Sbjct: 387 LNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAA 446

Query: 419 YCKEGKIVN 427
           + + G++ +
Sbjct: 447 FSRMGRLAD 455



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 147/342 (42%), Gaps = 23/342 (6%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESG 152
           G  PD +  N L        +LV+A+     M    S G  P PN++     I  LC+ G
Sbjct: 467 GLKPDTIVYNSLIQGFCMHGNLVKAKELISEMM---SRGI-PRPNTVFFNSIINSLCKEG 522

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            + EA   F  +  +G    + T+NS + G   + + +  + +   +I  G         
Sbjct: 523 RVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYS 582

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-SRFCEKKNFGRVSELLHTMVA 262
            L+  +C +G++ +G  L R++L  G+ P    +  ++   F + +  G   ++ H M+ 
Sbjct: 583 ALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVG-AKKMCHEMIE 641

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
                D  T   ++ GLC++    EA  +F  L       +  +  T+I  + K+    +
Sbjct: 642 SGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREE 701

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++  +   GL+PN  TY  MI    +  ++EEA  +   M   G   ++   N +I 
Sbjct: 702 ANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNNIIR 761

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            L   G   +A +   ++  K I  +  T + ++  + ++GK
Sbjct: 762 VLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGK 803



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 155/393 (39%), Gaps = 59/393 (15%)

Query: 29  LSIETKESQQLYTEIAKQVC---KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK---Q 82
           +++  K    +Y  + +  C    + + K    + +   IP  N    +FF   +    +
Sbjct: 464 IAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPN---TVFFNSIINSLCK 520

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFD--SLVEA--RAFKVAMDFLDSTGFSPNP 138
           +  V+ +   F  L  H G  PD+++ N L D   LV    +AF V +D + S G  P+ 
Sbjct: 521 EGRVVEAQDIFD-LVIHIGERPDVITFNSLIDGYGLVGKMEKAFGV-LDAMISVGIEPDV 578

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    +   C +G I++    F ++   GV  +  T+   L G     RT    K+ H+
Sbjct: 579 VTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 199 LIESGYLIQ-AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           +IESG  +  + C              ++  GL   N          C+ +      +L 
Sbjct: 639 MIESGTTMDISTCG-------------IILGGLCRNN----------CDDEAIALFKKLG 675

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
              V  N A  N     +I+ + K RKR EA  +F+ +   G VP+   Y  +I  L K 
Sbjct: 676 AMNVKFNIAIIN----TMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKE 731

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G + +A  M+  M   G  P+    N++I                + +L+KG       Y
Sbjct: 732 GSVEEADNMFSLMEKSGCAPSSRLLNNII----------------RVLLEKGEISKAGNY 775

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            + + G  +      A  +    ++KG +R+ I
Sbjct: 776 LSKVDGKTISLEASTASLMLSLFSRKGKYREQI 808


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 140/264 (53%), Gaps = 12/264 (4%)

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL-LRQ 224
           T+   +  C    R DL +    ++I+ G+         L++  C D + S+  ++ LR+
Sbjct: 93  TYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRR 152

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVINGLCKS 282
           + + G +P   ++N L+   C++       ELL  M     +  PD  +Y  VING  K 
Sbjct: 153 MTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKE 212

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
               +AY  ++++ +RG +P+ V Y+++I  LCK   +  A ++   M+  G++PN  TY
Sbjct: 213 GDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTY 272

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           NS++HGYC     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F+ M +
Sbjct: 273 NSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTK 332

Query: 403 KGIFRDVITYNTLIQGYCKEGKIV 426
           +G+  ++ TY TL+QGY  +G +V
Sbjct: 333 RGLKPEITTYGTLLQGYATKGALV 356



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 152/335 (45%), Gaps = 15/335 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GF  D ++   L   L   +    AMD     +   G  PN  S  + ++ LC+    +E
Sbjct: 121 GFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYNILLKGLCDENRSQE 180

Query: 157 AFCAFSKLKEMG--VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--------- 205
           A      + + G      + ++ + + G  K    D  +  YH++++ G L         
Sbjct: 181 ALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSI 240

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I A C    + +  E+L  ++++G++P    +N ++  +C           L  M +   
Sbjct: 241 IAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGV 300

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  TY  +++ LCK+ +  EA ++F+ + +RG  P+   Y T++ G    G L +   
Sbjct: 301 EPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHG 360

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M+  G+ PN Y ++ +I  Y +   +++A  +  +M  +G    TVTY T+I  LC
Sbjct: 361 LLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILC 420

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             GR ++A   FE+M  + +    I YN+LI   C
Sbjct: 421 KSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLC 455



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 152/338 (44%), Gaps = 15/338 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF- 158
           +P+L +  +L  S   A    +    L +    GF  +  +    ++ LC      +A  
Sbjct: 88  TPNLCTYGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMD 147

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----------DLIESGYLIQ 207
               ++ ++G   ++ ++N  L G    +R+    +L             D++    +I 
Sbjct: 148 IVLRRMTQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVIN 207

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            F  +G + + Y    ++L+ G++P    ++ +I+  C+ +   +  E+L +MV     P
Sbjct: 208 GFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMP 267

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +++G C S +  EA      +   G  PD V Y +++  LCK G   +ARKM+
Sbjct: 268 NCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMF 327

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  +GL P   TY +++ GY     L E   L   M+  G       ++ LI      
Sbjct: 328 DSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQ 387

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G+ D+A  +F +M Q+G+  D +TY T+I   CK G++
Sbjct: 388 GKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRV 425



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 157/340 (46%), Gaps = 24/340 (7%)

Query: 40  YTEIAKQVCKITRTKPRWE-----QTLLSDIPS-FNFNDPLFFREFLKQQNNVLLSIRFF 93
           +T + K +C   RT    +      T L  IP+ F++N      + L  +N    ++   
Sbjct: 129 FTPLLKGLCADKRTSDAMDIVLRRMTQLGCIPNVFSYN---ILLKGLCDENRSQEALELL 185

Query: 94  QWLHSHYG-FSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           Q +    G   PD+VS   + +   +     +A+    + LD  G  PN  +    I  L
Sbjct: 186 QMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDR-GILPNVVTYSSIIAAL 244

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVW---KLYHDLIESGY 204
           C++  +++A    + + + GV  + +T+NS + G C      + +    K++ D +E   
Sbjct: 245 CKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDV 304

Query: 205 -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                L+   C +G+ +E  ++   + + GL PE T +  L+  +  K     +  LL  
Sbjct: 305 VTYNSLMDYLCKNGRCTEARKMFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDL 364

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MV     P+++ +  +I    K  K  +A  VF+ ++++G  PDTV Y TVI  LCK G 
Sbjct: 365 MVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGR 424

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           + DA + + +MI + L P    YNS+IH  C  D  ++AK
Sbjct: 425 VEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAK 464



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/314 (20%), Positives = 144/314 (45%), Gaps = 14/314 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESG 152
           +  G  P++ S N+L   L +    + A++ L     D     P+  S    I    + G
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEG 213

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------- 205
            +++A+  + ++ + G+  ++ T++S +    K    D   ++   ++++G +       
Sbjct: 214 DLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYN 273

Query: 206 --IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
             +  +C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R
Sbjct: 274 SIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  ++ G       +E + + + +   G  P+  +++ +I    K G +  A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +GL P+  TY ++I   C+   +E+A R  ++M+D+      + YN+LI  
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHS 453

Query: 384 LCLHGRTDEAYHLF 397
           LC+  + D+A   F
Sbjct: 454 LCIFDKWDKAKDYF 467


>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
 gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
          Length = 1039

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 163/352 (46%), Gaps = 31/352 (8%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCL 148
           ++ FF+W+    GF     S   L   L   RA                 N  +L +  +
Sbjct: 73  ALAFFEWVARRPGFRHTAASHAALLQLLARRRA---------------PANYDKLVVSMI 117

Query: 149 CESGLIE---EAFCAFSKLKEMG---VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             SG  E   EA  A   ++  G   +  S K +N AL   ++ D T+ + KLY  L++ 
Sbjct: 118 SCSGTAEDMREAVDAIQAIRRAGGKRLALSPKCYNLALRSLLRFDMTEHMGKLYSQLVQE 177

Query: 203 GYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
           G L         I A+C +G ++  +   R + E G+  +    N L+  +C   +  + 
Sbjct: 178 GLLPDTVTYNTMIMAYCKEGSLAIAHRYFRLLRESGMEMDTYTCNALLLGYCRTGDLRKA 237

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             LL  M       + ++Y  +I GLC++R   EA  +   + + G  P+   YT +I G
Sbjct: 238 CWLLMMMPLMGCRRNEYSYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRG 297

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G + DAR +  EM  +G++P+ +TYN+MI GYC+   L++A  +   M   G    
Sbjct: 298 LCKEGRIHDARVLLDEMPRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPD 357

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             TYN+LI GLC  G+ DEA  L      +G    VIT+  +I GYCK  KI
Sbjct: 358 DWTYNSLIHGLC-GGKPDEAEELLNGAIARGFSPTVITFTNIINGYCKAEKI 408



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 150/329 (45%), Gaps = 13/329 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           S  +L   L E R  + A+  L      G SPN ++  L I+ LC+ G I +A     ++
Sbjct: 255 SYTILIQGLCETRCVREALVLLLMMLQDGCSPNLHTYTLLIRGLCKEGRIHDARVLLDEM 314

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
              GV  S+ T+N+ + G  K  R      +   +  +G          LI   C  GK 
Sbjct: 315 PRRGVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLCG-GKP 373

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  ELL   +  G  P    F  +I+ +C+ +       +   M++     D   Y  +
Sbjct: 374 DEAEELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVL 433

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ L K  +  EA    N++   G  P+ V+YT++I   CK+G +G A +++    H+G 
Sbjct: 434 ISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGC 493

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN +TY+S+I+G  +   L +A  L  +M + G     +TY TLI G C     D A+ 
Sbjct: 494 RPNAWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFR 553

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LFE M Q G+  D   YN L    CK G+
Sbjct: 554 LFEMMEQNGLTPDEQAYNVLTDALCKSGR 582



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/333 (26%), Positives = 143/333 (42%), Gaps = 15/333 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++V    + D+  +      A++    T   G  PN  +    I  L +   + +A
Sbjct: 457 GLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIYGLIQDQKLHKA 516

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +K++E G+   + T+ + + G  K    D  ++L+  + ++G          L  A
Sbjct: 517 MALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDA 576

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+  E Y  L   ++ G+V     +  L+  F +  N    + L+  MV      D
Sbjct: 577 LCKSGRAEEAYSFL---VKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKAD 633

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           + TY  ++  LCK +K  EA  + + +  RG   + V YT +I  + K G    A+ M+ 
Sbjct: 634 SHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFN 693

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G  P+  TY   I  YC+I  +EEA  L  EM   G     VTYN  I G    G
Sbjct: 694 EMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGEMERNGVAPDVVTYNVFINGCGHMG 753

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             D A+   + M       +  TY  L++ + K
Sbjct: 754 YMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLK 786



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 150/337 (44%), Gaps = 16/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + + N + D   ++   K A+     ++  G +P+  +    I  LC  G  +EA
Sbjct: 318 GVVPSVWTYNAMIDGYCKSGRLKDALGIKTLMEGNGCNPDDWTYNSLIHGLC-GGKPDEA 376

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
               +     G   ++ T+ + + G  K ++ D   ++   +I S         G LI  
Sbjct: 377 EELLNGAIARGFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISV 436

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                ++ E  + L ++  +GL P    +  +I  +C+    G   E+          P+
Sbjct: 437 LIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPN 496

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I GL + +K  +A  +   ++E G  P  + YTT+I G CK     +A +++ 
Sbjct: 497 AWTYSSLIYGLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFE 556

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   GL P+E  YN +    C+    EEA   +  ++ KG   T VTY +L+ G    G
Sbjct: 557 MMEQNGLTPDEQAYNVLTDALCKSGRAEEA---YSFLVKKGVVLTKVTYTSLVDGFSKAG 613

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T+ A  L E+M  +G   D  TY+ L+Q  CK+ K+
Sbjct: 614 NTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKL 650



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 135/324 (41%), Gaps = 32/324 (9%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           DL +  VL   L++    K A D L+   + G SPN       I   C+ G +  A   F
Sbjct: 426 DLQAYGVLISVLIKKHRLKEAKDTLNEIFANGLSPNVVIYTSIIDAYCKVGKVGAALEVF 485

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
              +  G   +  T++S + G I+                          D K+ +   L
Sbjct: 486 KLTEHEGCRPNAWTYSSLIYGLIQ--------------------------DQKLHKAMAL 519

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           + ++ EDG+ P    +  LI   C+K  F     L   M      PD   Y  + + LCK
Sbjct: 520 ITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCK 579

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
           S +  EAY     L ++G V   V YT+++ G  K G    A  +  +M+++G   + +T
Sbjct: 580 SGRAEEAYSF---LVKKGVVLTKVTYTSLVDGFSKAGNTEFAAALIEKMVNEGCKADSHT 636

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           Y+ ++   C+   L EA  +  +M  +G     V Y  +I+ +   G+ D A  +F EM 
Sbjct: 637 YSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMI 696

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G     ITY   I  YCK G+I
Sbjct: 697 SSGHKPSAITYTVFISSYCKIGRI 720



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 160/397 (40%), Gaps = 61/397 (15%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG--------------F 134
           + R F+ +  + G +PD  + NVL D+L ++   + A  FL   G              F
Sbjct: 551 AFRLFEMMEQN-GLTPDEQAYNVLTDALCKSGRAEEAYSFLVKKGVVLTKVTYTSLVDGF 609

Query: 135 SPNPNS---------------------LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           S   N+                       + +Q LC+   + EA     ++   GV G+I
Sbjct: 610 SKAGNTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNI 669

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
             +   +   IK  + D    +++++I SG+          I ++C  G++ E   L+ +
Sbjct: 670 VAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEAGHLIGE 729

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI-------- 276
           +  +G+ P+   +N  I+              L  M+  +  P+ +TY  ++        
Sbjct: 730 MERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKHFLKMSL 789

Query: 277 --------NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
                   +G+    K    +++   + + G  P  V Y+++I G CK   L +A  +  
Sbjct: 790 ANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEEACVLLD 849

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K + PNE  Y  +I   C I   E+A      M++ G+     +Y+ LI GLC  G
Sbjct: 850 HMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLITGLCDEG 909

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D+A  LF ++ +     + + +  L  G  K G +
Sbjct: 910 DYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHV 946



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/293 (18%), Positives = 120/293 (40%), Gaps = 28/293 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G   ++V+  ++   +++      A    +   S+G  P+  +  ++I   C+ G IEEA
Sbjct: 664 GVKGNIVAYTIIISEMIKEGKHDHAKSMFNEMISSGHKPSAITYTVFISSYCKIGRIEEA 723

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
                +++  GV   + T+N  + GC  +   D  +     +I++               
Sbjct: 724 GHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLLLKH 783

Query: 204 YLIQAFCNDG-----------KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           +L  +  N             K+   ++LL ++++ GL P    ++ +I+ FC+      
Sbjct: 784 FLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATRLEE 843

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
              LL  M+ ++ +P+   Y  +I   C  +   +A     ++ E G+ P    Y  +I 
Sbjct: 844 ACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHYLIT 903

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           GLC  G    A+ ++ +++      NE  +  +  G  +  +++   +L   M
Sbjct: 904 GLCDEGDYDKAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAM 956



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 72/193 (37%), Gaps = 29/193 (15%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEE 156
           +G +P  V+ + +     +A   + A   LD       SPN     + I+C C+  L E+
Sbjct: 819 HGLNPTAVTYSSIIAGFCKATRLEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEK 878

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A    + + E G    +++                    YH      YLI   C++G   
Sbjct: 879 AASFVTNMIECGFQPHLES--------------------YH------YLITGLCDEGDYD 912

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +   L   +LE        A+  L     +  +    S+LL  M  R+   D+ TY  V 
Sbjct: 913 KAKALFCDLLEMDYNHNEVAWKILNDGLLKAGHVDICSQLLSAMENRHCRIDSETYSMVT 972

Query: 277 NGLCKSRKRLEAY 289
           N + ++    E+Y
Sbjct: 973 NNIHEASGMYESY 985


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 142/287 (49%), Gaps = 9/287 (3%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204
           ESG + +A   +   +E  +     T    L   +K+    LVW     +   G      
Sbjct: 82  ESGFLRDAIECYRLTREHKLRVPFDTCKKVLEHLMKLKYFKLVWGFXXXIXXXGXXXXXX 141

Query: 205 ----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               L+  FC DG +     +   + + GL P   ++N L++ +    +      L   M
Sbjct: 142 FFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAM 201

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           +A    PD +TY  +INGLCK  K  +A  +F+++  +G  P+ V +TT+I G CK G +
Sbjct: 202 LASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRV 261

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++ +M+ + LLP+  TYN++I+G C+  +L++A  L  EM  KG     +TY TL
Sbjct: 262 DLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTL 321

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           I G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+ V+
Sbjct: 322 IDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVD 368



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 150/321 (46%), Gaps = 29/321 (9%)

Query: 108 SCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           +C  + + L++ + FK+   F   +   G         + +   C+ G I  A   F  +
Sbjct: 107 TCKKVLEHLMKLKYFKLVWGFXXXIXXXGXXXXXXFFNILMHRFCKDGDIRIAQSVFDAI 166

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQ 224
            + G+  S+ ++N+ + G I++                          G ++EG+ L   
Sbjct: 167 AKWGLRPSVVSYNTLMNGYIRL--------------------------GDLNEGFRLKSA 200

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           +L  G+ P+   ++ LI+  C++      +EL   M+ +   P+  T+  +I+G CK+ +
Sbjct: 201 MLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGR 260

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A  ++  +  +  +PD + Y T+I+GLCK G L  A  +  EM  KGL  ++ TY +
Sbjct: 261 VDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKITYTT 320

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I G C+  +L+ A    K M+ +      V Y  LI+GLC  GR+ +A  +  EM   G
Sbjct: 321 LIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVG 380

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  D  TY  +I  +CK+G +
Sbjct: 381 LKPDTXTYTMIINEFCKKGDV 401


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEE 156
           +G  P   +C     +L +   ++ A   F+D  + G  PN  +    I  LC SGL++ 
Sbjct: 314 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKV 373

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   F ++   GVF +  T+N+ +   ++  R    + + +         +++    +I+
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIK 433

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G   +   ++  +L+ G       +N +I  +C+  N      +L  M      P
Sbjct: 434 GYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D ++Y E+I G CK  K   A+ +FN++ + G  P+ V YT +I G CK   L  A  + 
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 553

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  PN  TYN +IHG  + +N   A+ L K M+++G     VTY  +I GLC +
Sbjct: 554 EHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKN 613

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T  A  +F +M ++G   +++TY++LI+   +EGK+
Sbjct: 614 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV 651



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC+SG + EAF    ++   G+  +  T    ++    +   +  
Sbjct: 280 GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDA 339

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           W+L+ D+   G          LI   C  G +     L  ++  DG+ P    +N LI+ 
Sbjct: 340 WRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINI 399

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             E +       +L+ M     +P+  TY E+I G C      +A  V N++ +RG+  +
Sbjct: 400 LVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 459

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y T+I G C  G    A ++   M   G  P+E++Y  +I G+C+I  +E A  L  
Sbjct: 460 LVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN 519

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EM+D G     VTY  LI G C   + D A  L E M + G   +V TYN LI G  K+
Sbjct: 520 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +   L   L  +   KVA+     +   G  PN  +    I  L E+  I+ A
Sbjct: 350 GCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   + +   G   +I T+N  + G   +        + +++++ G+         +I+ 
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C+ G  +    +L  + + G  P+  ++ +LI  FC+         L + MV     P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  K   A  +   +K  G  P+   Y  +IHGL K      A ++  
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G+ PN  TY +MI G C+  +   A  +  +M+++G     +TY++LI  L   G
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +EA +LF E+ + G+  D ITY  +I+ Y   GK+
Sbjct: 650 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 686



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 15/348 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELY 144
           ++I  F  + S  G  P+ V+ N L + LVE R  K   V ++ +   G SPN  +    
Sbjct: 373 VAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I+  C  G  ++A    + + + G   ++ T+N+ + G      T    ++  DL+  G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGG 490

Query: 204 ---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     LI  FC   K+   + L  ++++DGL P    +  LI  +C+ +     +
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LL  M      P+  TY  +I+GL K      A  +   + E G  P+ V YT +I GL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G    A +M+ +MI +G LPN  TY+S+I    +   +EEA+ L  E+   G     
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 670

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +TY  +I    + G+ + A++    M + G    + TY  LI+G   E
Sbjct: 671 ITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNE 718



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 13/266 (4%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
           MG+F     +++ L+   ++  T  V   YH ++  G          +I A C DG V++
Sbjct: 178 MGLFA----YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVAD 233

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              ++++V E  + P+   +  +I   C K +     ++ + M      P+  TY  +IN
Sbjct: 234 AETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLIN 293

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC S +  EA+ +  ++   G +P     T  I  LC MG   DA +++ +M +KG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N YTY ++I G C    L+ A  L   M   G    TVTYN LI  L  + R   A+ + 
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
             M + G   +++TYN +I+GYC  G
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILG 439



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G  PN       I  LC+ G + +A     K+ E  +     T+ S +LG  +    D
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              ++++ + + G          LI   C+ G+V+E ++L+R+++  G++P        I
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+   +     L   M  +   P+ +TY  +I+GLC S     A  +F+ +   G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVF 387

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+TV Y  +I+ L +   +  A  +   M   G  PN  TYN MI GYC + + ++A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              ML +G+    VTYNT+I G C  G T  A  + + M   G   D  +Y  LI G+CK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 422 EGKI 425
             K+
Sbjct: 508 ISKM 511



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 35/248 (14%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +LI++  +   ++     L  + + GL     A++ L+           V +  H M++ 
Sbjct: 150 HLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 264 NRAPDNFTYEEVINGLCKS----------RKRLE-------------------------A 288
              P+   Y  VIN LCK           +K  E                         A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +VFN + + G  P+TV Y+T+I+GLC  G + +A  +  EMI  G+LP  +T    I  
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C +   E+A RL  +M +KG      TY  LI+GLC+ G    A  LF  M++ G+F +
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPN 389

Query: 409 VITYNTLI 416
            +TYN LI
Sbjct: 390 TVTYNALI 397



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 140/359 (38%), Gaps = 36/359 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+   L D   +      A   L+    +G  PN  +  + I  L +      A
Sbjct: 525 GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + E G+F ++ T+ + + G  K   T L  ++++ +IE G          LI+A
Sbjct: 585 EELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRA 644

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GKV E   L  ++   GL+P+   + K+I  +            L  M+     P 
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPT 704

Query: 269 NFTYEEVINGLCK----SRKRLEA-----------YRVFND---------LKERGYVPDT 304
            +TY  +I GL      + +RL A           Y+  +          L E       
Sbjct: 705 LWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSV 764

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +   ++  L   G   +A ++   MI +GL P++  YNS++    R+ N++ A  + K 
Sbjct: 765 QVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKH 824

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           M  +G       Y  LI  LC   R  EA   FE M  +    D +    LI G  ++G
Sbjct: 825 MSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 1/147 (0%)

Query: 280 CKSRKRLEAYRVFND-LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           C S++ +     F D L + G       Y+ ++  L ++G        +  M+ +G+ PN
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YN++I+  C+  N+ +A+ + K++ +      T TY ++I G C     D A  +F 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +MA++G   + +TY+TLI G C  G++
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLCDSGRV 301



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 21/305 (6%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AF +  + +D  G  PN  +    I   C+   ++ A      +K  G   +++T+N  +
Sbjct: 514 AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 572

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K +      +L   +IE G          +I   C +G  S   E+  +++E G +
Sbjct: 573 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 632

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    ++ LI    ++        L   +      PD  TY ++I     S K   A+  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + G  P    Y  +I GL     L D R           LP+     S   GY  
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR--------LAALPDVVPNCSF--GYQT 742

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D  +    +  ++ +   G +    N L++ L   GR  EA  L   M  +G+  D   
Sbjct: 743 TDQ-DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 801

Query: 412 YNTLI 416
           YN+L+
Sbjct: 802 YNSLL 806



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+      G+  E  ELL  ++  GL P+  A+N L+      +N      +   M  + 
Sbjct: 770 LVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 829

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                  Y+E+I  LC+  +R EA   F ++  R + PD V+   +I GL + G+    +
Sbjct: 830 CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGY----K 885

Query: 325 KMWFEMIH 332
            +  E +H
Sbjct: 886 DLCMEFLH 893


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 153/302 (50%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT--- 189
           G+ PN  +L   I+ LC  G I +AF    KL  +G      ++ + + G  K+  T   
Sbjct: 2   GYHPNTITLNTLIKGLCLKGQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAA 61

Query: 190 -DLVWKLYHDLIE-----SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            DL+ ++   L++        +I   C D  V++ ++L  +++  G+ P    ++ LIS 
Sbjct: 62  LDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISG 121

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           F          +L + ++  N  PD +T+  +++G CK RK  E   VF  + ++G +PD
Sbjct: 122 FFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPD 181

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y +++ G   +  +  A+ ++  M   G+ P+  +YN +I+G+C+I  +++A  L  
Sbjct: 182 VVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFN 241

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  K      VTYN+LI GL   GR   A  L ++M  +G+  +++TYN++I    K  
Sbjct: 242 EMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTH 301

Query: 424 KI 425
           ++
Sbjct: 302 QV 303



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 151/312 (48%), Gaps = 12/312 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D VS   L   L +    + A+D L   D      N       I  +C+   + +A
Sbjct: 37  GFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDA 96

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI-----ESGY----LIQA 208
           F  +S++   G+  ++ T+++ + G   + +      L++ +I       GY    L+  
Sbjct: 97  FDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDG 156

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC D K+ EG  +   +++ G++P+   +N L+  +   K       + +TM      PD
Sbjct: 157 FCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPD 216

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +ING CK +K  +A  +FN++  +  +P+ V Y ++I GL K G +  A ++  
Sbjct: 217 IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVD 276

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +G+ PN  TYNS+I    +   +++A  L  +  D+G   +  TY  LI GLC  G
Sbjct: 277 QMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKGG 336

Query: 389 RTDEAYHLFEEM 400
           R  +A ++FE++
Sbjct: 337 RLKDARNIFEDL 348


>gi|255575351|ref|XP_002528578.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531974|gb|EEF33786.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 817

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 149/328 (45%), Gaps = 29/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + ++LFD L+       AM+  +     G   N  +  + +  LC+ G +E+A
Sbjct: 311 GFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRINNYTGSILLNGLCKQGKVEKA 370

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                K  E G+      +N+                           +  +C  G +++
Sbjct: 371 EEILKKFTENGLVADEVIYNT--------------------------FVNGYCRIGDMNK 404

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
               + ++   GL P +  FN LI +FC+ K   +  E +  M  +   P   TY  +I+
Sbjct: 405 AILTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLID 464

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K       +++   ++E G  P+ V Y ++I+ LCK G + +A  +  +MI +G+LP
Sbjct: 465 GYGKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLP 524

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N   YN +I G C +  +++A R   EM+      T VTYN LI GLC  G+  EA    
Sbjct: 525 NAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDFL 584

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++   G   DVITYN+LI GY   G +
Sbjct: 585 TQITSSGHSPDVITYNSLISGYANAGNV 612



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 160/338 (47%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D         + V+ +  K+ M+FLDS    G  PN     + I  LC    I +A
Sbjct: 171 GFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIRDA 230

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              F ++  + + GSI T+N+ + G  K+   D  +K+           ++I    L+  
Sbjct: 231 EKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLLSG 290

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K+ E   LL+++  +G +P+   ++ L        +     EL      +    +
Sbjct: 291 LCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDGNGAMELYEQATEKGIRIN 350

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N+T   ++NGLCK  K  +A  +     E G V D V+Y T ++G C++G +  A     
Sbjct: 351 NYTGSILLNGLCKQGKVEKAEEILKKFTENGLVADEVIYNTFVNGYCRIGDMNKAILTIE 410

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   GL PN  T+NS+I  +C +  +++A+   K+M +KG   +  TYNTLI G     
Sbjct: 411 RMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGYGKLC 470

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             D  + + E+M + G+  +V++Y +LI   CK+GKI+
Sbjct: 471 TFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKIL 508



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/316 (28%), Positives = 153/316 (48%), Gaps = 16/316 (5%)

Query: 124 VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
           + ++ ++S G  PN  +    I   C+   +++A     K+ E GV  S++T+N+ + G 
Sbjct: 407 LTIERMESFGLRPNSITFNSLIDKFCDMKEMDKAEEWVKKMAEKGVTPSVETYNTLIDGY 466

Query: 184 IKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            K+   D  +++           +++  G LI   C DGK+ E   +LR ++  G++P  
Sbjct: 467 GKLCTFDRCFQILEQMEEIGVKPNVVSYGSLINCLCKDGKILEAEIVLRDMICRGVLPNA 526

Query: 235 TAFNKLISRFCEKKNFGRVSELLH---TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
             +N LI   C     G+V + L     M+    +P   TY  +I+GLCK  K  EA   
Sbjct: 527 QVYNMLIDGSCM---VGKVKDALRFFDEMMRSEISPTLVTYNVLIDGLCKKGKLTEAEDF 583

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              +   G+ PD + Y ++I G    G +     ++  M + G+ P   TY+ +I G C 
Sbjct: 584 LTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISG-CS 642

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            + +E  ++L+ EML        V YN +I      G T +AY L + M  +GI  D +T
Sbjct: 643 KEGIELVEKLYNEMLQMNLLPDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMT 702

Query: 412 YNTLIQGYCKEGKIVN 427
           YN+LI G+ +EGK+ N
Sbjct: 703 YNSLILGHFREGKLSN 718



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 110/215 (51%)

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
           N+ +  +  +L  ++   G   +   + K I    + +N     E L +M  R   P+ F
Sbjct: 153 NEKQFVKVVDLFMEIENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVF 212

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  +I GLC+ ++  +A ++F+++     V   V Y T+I G CK+G L  A KM   M
Sbjct: 213 IYNVLIGGLCREKRIRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERM 272

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             K + PN  T+NS++ G C++  ++EA+ L KEM   G+     TY+ L  GL      
Sbjct: 273 KEKSVAPNIITFNSLLSGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDG 332

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + A  L+E+  +KGI  +  T + L+ G CK+GK+
Sbjct: 333 NGAMELYEQATEKGIRINNYTGSILLNGLCKQGKV 367



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 148/363 (40%), Gaps = 52/363 (14%)

Query: 94  QWLH--SHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           +W+   +  G +P + + N L D   +     R F++ ++ ++  G  PN  S    I C
Sbjct: 442 EWVKKMAEKGVTPSVETYNTLIDGYGKLCTFDRCFQI-LEQMEEIGVKPNVVSYGSLINC 500

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----- 202
           LC+ G I EA      +   GV  + + +N  + G   + +     + + +++ S     
Sbjct: 501 LCKDGKILEAEIVLRDMICRGVLPNAQVYNMLIDGSCMVGKVKDALRFFDEMMRSEISPT 560

Query: 203 ----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C  GK++E  + L Q+   G  P+   +N LIS +    N  +   L  
Sbjct: 561 LVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLISGYANAGNVSKCLGLYE 620

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           TM      P   TY  +I+G  K    L   +++N++ +   +PD V+Y  +IH   ++G
Sbjct: 621 TMKNLGIKPTVRTYHPLISGCSKEGIEL-VEKLYNEMLQMNLLPDRVVYNAMIHCYAEIG 679

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMI-------------------------------- 346
               A  +   M+ +G+ P++ TYNS+I                                
Sbjct: 680 NTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDLVNNMKAKELAPKADTYD 739

Query: 347 ---HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
               G+C + +   A   ++EM++  +       N L AGL   GR  E   +  EM  K
Sbjct: 740 ILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQEGRLQEVQVICSEMNVK 799

Query: 404 GIF 406
           GI 
Sbjct: 800 GII 802



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 2/224 (0%)

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
           S  L+   C    + E  EL   +  DG +P   + + L S    +K F +V +L   + 
Sbjct: 109 SDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFMEIE 168

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                 D F Y + I    K +         + +++RG  P+  +Y  +I GLC+   + 
Sbjct: 169 NSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKRIR 228

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA KM+ EM +  L+ +  TYN++I GYC++  L+ A ++ + M +K      +T+N+L+
Sbjct: 229 DAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNSLL 288

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY--CKEG 423
           +GLC   +  EA  L +EM   G   D  TY+ L  G   C +G
Sbjct: 289 SGLCKMRKMKEARSLLKEMEVNGFMPDGYTYSILFDGLLRCDDG 332



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 125/260 (48%), Gaps = 14/260 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYI 145
           ++RFF  +      SP LV+ NVL D L +      A DFL    S+G SP+  +    I
Sbjct: 545 ALRFFDEMMRSE-ISPTLVTYNVLIDGLCKKGKLTEAEDFLTQITSSGHSPDVITYNSLI 603

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
                +G + +    +  +K +G+  +++T++  + GC K +  +LV KLY+++++   L
Sbjct: 604 SGYANAGNVSKCLGLYETMKNLGIKPTVRTYHPLISGCSK-EGIELVEKLYNEMLQMNLL 662

Query: 206 ---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                    I  +   G   + Y L + +L+ G+ P+   +N LI     +     + +L
Sbjct: 663 PDRVVYNAMIHCYAEIGNTQKAYSLHQGMLDQGIHPDKMTYNSLILGHFREGKLSNIKDL 722

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           ++ M A+  AP   TY+ ++ G C  +    AY  + ++ E  ++P+  +   +  GL +
Sbjct: 723 VNNMKAKELAPKADTYDILVKGHCDLKDFSGAYVWYREMVENNFLPNASICNELTAGLEQ 782

Query: 317 MGWLGDARKMWFEMIHKGLL 336
            G L + + +  EM  KG++
Sbjct: 783 EGRLQEVQVICSEMNVKGII 802



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 94/191 (49%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           T  + L+S  C+ K      EL   M    + P   +   + + L   ++ ++   +F +
Sbjct: 107 TLSDMLLSVCCKSKMLREAVELYEFMRRDGKLPSLVSLSLLFSCLVNEKQFVKVVDLFME 166

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           ++  G+  DT MY   I    K+  L    +    M  +G+ PN + YN +I G CR   
Sbjct: 167 IENSGFRTDTFMYAKAIQAAVKLQNLKMGMEFLDSMRKRGVRPNVFIYNVLIGGLCREKR 226

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           + +A+++  EM +     + VTYNTLI G C  G  D A+ + E M +K +  ++IT+N+
Sbjct: 227 IRDAEKMFDEMCNINLVGSIVTYNTLIDGYCKVGELDAAFKMRERMKEKSVAPNIITFNS 286

Query: 415 LIQGYCKEGKI 425
           L+ G CK  K+
Sbjct: 287 LLSGLCKMRKM 297


>gi|449433161|ref|XP_004134366.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 917

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 155/373 (41%), Gaps = 48/373 (12%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           S  G   D   C+V    L  A  +  AM  L++    G  P+  +    I     +GL 
Sbjct: 455 SVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLE 514

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------- 204
           E AF A+  + + G+  S  T +S L+  ++    D  W   +D+I+ G+          
Sbjct: 515 ERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVL 574

Query: 205 ----------------------------------LIQAFCNDGKVSEGYELLRQVLEDGL 230
                                              I   C  G +++ Y++   +L  G 
Sbjct: 575 LDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGF 634

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           VP N  +N LI  FC+        +L+  M  R   PD FT   +I GLCK  +   A  
Sbjct: 635 VPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIE 694

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            F D+   G  PD V Y T+I G CK   +G A  +  +M   G  P+  TYN  IHGYC
Sbjct: 695 TFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYC 754

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            +  +  A  + +E++  G    TVTYNT+I  +C +   D A  L  ++ +     + +
Sbjct: 755 TVRKINRAVMILEELISVGIVPNTVTYNTMINAVC-NVILDHAMILTAKLLKMAFVPNTV 813

Query: 411 TYNTLIQGYCKEG 423
           T N L+  +CK+G
Sbjct: 814 TVNVLLSQFCKQG 826



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 165/368 (44%), Gaps = 47/368 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + +   + D+  +    ++A  + D     G S N     + I    ++  I +A
Sbjct: 353 GCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQA 412

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F +++   +     T+N+ + G  +  + +   +L  DL  SG L         +  
Sbjct: 413 NLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAG 472

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF----CEKKNF-------------- 250
            C  G+  E  +LL  +L  G+ P   AFN +I+ +     E++ F              
Sbjct: 473 LCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPS 532

Query: 251 --------------GRVSEL---LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                         G + E    L+ M+ +     N  +  +++G  +      A  ++N
Sbjct: 533 SSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWN 592

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++K RG  PD V +   I+GLC  G + DA  ++ +M+ KG +PN + YNS+I G+C++ 
Sbjct: 593 EMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVG 652

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            L EA +L +EM  +G      T N +I GLC  GR   A   F +M + G+  D++TYN
Sbjct: 653 KLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYN 712

Query: 414 TLIQGYCK 421
           TLI GYCK
Sbjct: 713 TLIDGYCK 720



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 136/292 (46%), Gaps = 9/292 (3%)

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           L+  ++   +S +  EA    SK++E+GV  +    +      I+      VWKL+ D++
Sbjct: 221 LDTLMRAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVV 280

Query: 201 ESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             G          LI  FC  G    G  LL  + +    P+  ++N +I+  C K    
Sbjct: 281 RKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSS 340

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               LL+ M+     P   T+  +I+  CK      A + F+++++ G   +T++Y  +I
Sbjct: 341 YALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMI 400

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G  K   +  A  ++ EM  K ++P+  T+N+++ G+ R    E+  RL +++   G  
Sbjct: 401 SGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLL 460

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             +   +  +AGLC  GR DEA  L E +  KGI   V+ +N++I  Y   G
Sbjct: 461 HDSSLCDVTVAGLCWAGRYDEAMKLLENLLGKGIPPSVVAFNSIIAAYGNAG 512



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 165/414 (39%), Gaps = 96/414 (23%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL--I 154
           G +P+  + ++LF  L+ A      +K+  D +   G  PN  +  L I   C  G   I
Sbjct: 248 GVTPNPSAISILFRLLIRAGDCGAVWKLFGDVV-RKGPCPNNFTFNLLILEFCRKGWTRI 306

Query: 155 EEAFCAFSKLKEMGVF---GSIKTWNSAL-LGCIKIDRTDLVWKLYHDLIESG------- 203
            EA      L  MG F     + ++N  +   C+K  ++     L + +IE+G       
Sbjct: 307 GEAL-----LHVMGKFRCEPDVYSYNIVINANCLK-GQSSYALHLLNLMIENGCKPSIAT 360

Query: 204 --YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +I AFC +G V    +   ++ + GL      +N +IS + + ++  + + L   M 
Sbjct: 361 FCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMR 420

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            ++  PD  T+  ++ G  +  K  +  R+  DL   G + D+ +    + GLC  G   
Sbjct: 421 TKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYD 480

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGY-------------------------------- 349
           +A K+   ++ KG+ P+   +NS+I  Y                                
Sbjct: 481 EAMKLLENLLGKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLL 540

Query: 350 ---CRIDNLEEAKRLHKEMLDKGYGETTVTYNTL-------------------------- 380
               R  +L+EA     +M+DKG+  T + +  L                          
Sbjct: 541 ISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVF 600

Query: 381 ---------IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                    I GLC+ G   +AY +F +M +KG   +   YN+LI G+CK GK+
Sbjct: 601 PDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKL 654



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 52/205 (25%), Positives = 87/205 (42%), Gaps = 4/205 (1%)

Query: 225 VLEDGLVPENTAF--NKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLC 280
           VL   L  E   F    ++S    +   GR   L   M   +R    D    + ++    
Sbjct: 170 VLAHLLAAEQLRFLAQDIVSWVVARIGPGRSKNLAAFMWEGHRVYESDYSVLDTLMRAFV 229

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           KS    EA  + + ++E G  P+    + +   L + G  G   K++ +++ KG  PN +
Sbjct: 230 KSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVVRKGPCPNNF 289

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T+N +I  +CR       + L   M          +YN +I   CL G++  A HL   M
Sbjct: 290 TFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSSYALHLLNLM 349

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            + G    + T+ T+I  +CKEG +
Sbjct: 350 IENGCKPSIATFCTIIDAFCKEGNV 374


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 151/332 (45%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+++  +L ++         AM  LD   S G  P+  +  + +  +C+ G ++EA   
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            + +   G   ++ T N  L       R     KL  +++  G          LI   C 
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G +    ++L ++   G  P + ++N L+  FC++K   R  + L  MV+R   PD  T
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++  LCK  K   A  + N L  +G  P  + Y TVI GL K+G    A ++  EM 
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMR 253

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL P+  TY+S+I G  R   +EEA +   ++   G      TYN+++ GLC   +TD
Sbjct: 254 GKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTD 313

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            A      M  KG     ++Y  LI+G   EG
Sbjct: 314 RAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 66/229 (28%), Positives = 122/229 (53%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           Y D+I    LI+A C +  V +  +LL ++   G  P+   +N L++  C++       +
Sbjct: 13  YPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
            L++M +    P+  T+  ++  +C + + ++A ++  ++  +G  P  V +  +I+ LC
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLC 132

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           + G LG A  +  +M   G  PN  +YN ++HG+C+   ++ A +  + M+ +G     V
Sbjct: 133 RKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIV 192

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TYNT++  LC  G+ D A  L  +++ KG    +ITYNT+I G  K GK
Sbjct: 193 TYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGK 241



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 83/319 (26%), Positives = 152/319 (47%), Gaps = 12/319 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ NVL + + +      A+ FL+S    G  PN  +  + ++ +C +G   +A
Sbjct: 46  GCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDA 105

Query: 158 FCAFSKLKEMGVFGSIKTWN--------SALLG-CIKIDRTDLVWKLYHDLIESGYLIQA 208
               +++   G   S+ T+N          LLG  I I           + +    L+  
Sbjct: 106 EKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHG 165

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC + K+    + L  ++  G  P+   +N +++  C+        ELL+ + ++  +P 
Sbjct: 166 FCKEKKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPV 225

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  VI+GL K  K  +A  + ++++ +G  PD + Y+++I GL + G + +A K + 
Sbjct: 226 LITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFH 285

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           ++   G+ PN +TYNS++ G C+    + A      M+ KG   T V+Y  LI G+   G
Sbjct: 286 DVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEG 345

Query: 389 RTDEAYHLFEEMAQKGIFR 407
              EA  L  E+  +G+ +
Sbjct: 346 LAKEALELLNELCSRGVVK 364



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 106/206 (51%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           E+L + LE    P+   +  LI   C +   G+  +LL  M +R   PD  TY  ++NG+
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK  +  EA +  N +   G  P+ + +  ++  +C  G   DA K+  EM+ KG  P+ 
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSV 121

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            T+N +I+  CR   L  A  + ++M   G    +++YN L+ G C   + D A    E 
Sbjct: 122 VTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEI 181

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKI 425
           M  +G + D++TYNT++   CK+GK+
Sbjct: 182 MVSRGCYPDIVTYNTMLTALCKDGKV 207



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 113/228 (49%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    L+   C +G++ E  + L  +   G  P     N ++   C    +    +LL
Sbjct: 50  DVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLL 109

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             MV +  +P   T+  +IN LC+      A  +   +   G  P+++ Y  ++HG CK 
Sbjct: 110 TEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKE 169

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A +    M+ +G  P+  TYN+M+   C+   ++ A  L  ++  KG     +TY
Sbjct: 170 KKMDRAIQYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITY 229

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NT+I GL   G+TD+A  L  EM  KG+  DVITY++LI G  +EGK+
Sbjct: 230 NTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKV 277



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 12/151 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G SP L++ N + D L +      A++ L      G  P+  +    I  L   G +
Sbjct: 218 SSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKV 277

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           EEA   F  ++  GV  +  T+NS + G  K  +TD        +I  G          L
Sbjct: 278 EEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTIL 337

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
           I+   N+G   E  ELL ++   G+V +++A
Sbjct: 338 IEGIANEGLAKEALELLNELCSRGVVKKSSA 368


>gi|449487636|ref|XP_004157725.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g19290-like [Cucumis
           sativus]
          Length = 885

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 155/373 (41%), Gaps = 48/373 (12%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           S  G   D   C+V    L  A  +  AM  L++    G  P+  +    I     +GL 
Sbjct: 424 SVSGLLHDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLE 483

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------- 204
           E AF A+  + + G+  S  T +S L+  ++    D  W   +D+I+ G+          
Sbjct: 484 ERAFYAYGIMVKFGLTPSSSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVL 543

Query: 205 ----------------------------------LIQAFCNDGKVSEGYELLRQVLEDGL 230
                                              I   C  G +++ Y++   +L  G 
Sbjct: 544 LDGYFRIGAVNMAESLWNEMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGF 603

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           VP N  +N LI  FC+        +L+  M  R   PD FT   +I GLCK  +   A  
Sbjct: 604 VPNNFVYNSLIGGFCKVGKLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIE 663

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            F D+   G  PD V Y T+I G CK   +G A  +  +M   G  P+  TYN  IHGYC
Sbjct: 664 TFMDMCRMGLSPDIVTYNTLIDGYCKAFDVGGADDLMMKMSDSGWEPDLTTYNIRIHGYC 723

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            +  +  A  + +E++  G    TVTYNT+I  +C +   D A  L  ++ +     + +
Sbjct: 724 TVRKINRAVMILEELISVGIVPNTVTYNTMINAVC-NVILDHAMILTAKLLKMAFVPNTV 782

Query: 411 TYNTLIQGYCKEG 423
           T N L+  +CK+G
Sbjct: 783 TVNVLLSQFCKQG 795



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 166/368 (45%), Gaps = 47/368 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P + +   + D+  +    ++A  + D     G S N     + I    ++  I +A
Sbjct: 322 GCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQA 381

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F +++   +     T+N+ + G  +  + +   +L  DL  SG L         +  
Sbjct: 382 NLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAG 441

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF----CEKKNF-------------- 250
            C  G+  E  +LL  +LE G+ P   AFN +I+ +     E++ F              
Sbjct: 442 LCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPS 501

Query: 251 --------------GRVSEL---LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                         G + E    L+ M+ +     N  +  +++G  +      A  ++N
Sbjct: 502 SSTCSSLLISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWN 561

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++K RG  PD V +   I+GLC  G + DA  ++ +M+ KG +PN + YNS+I G+C++ 
Sbjct: 562 EMKGRGVFPDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVG 621

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            L EA +L +EM  +G      T N +I GLC  GR   A   F +M + G+  D++TYN
Sbjct: 622 KLNEALKLVREMNKRGLLPDIFTVNMIICGLCKQGRMKLAIETFMDMCRMGLSPDIVTYN 681

Query: 414 TLIQGYCK 421
           TLI GYCK
Sbjct: 682 TLIDGYCK 689



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 9/292 (3%)

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           L+  +Q   +S +  EA    SK++E+GV  +    +      I+      VWKL+ D++
Sbjct: 190 LDTLMQAFVKSEMHFEALEILSKMREVGVTPNPSAISILFRLLIRAGDCGAVWKLFGDVV 249

Query: 201 ESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             G          LI  FC  G    G  LL  + +    P+  ++N +I+  C K    
Sbjct: 250 RKGPCPNNFTFNLLILEFCRKGWTRIGEALLHVMGKFRCEPDVYSYNIVINANCLKGQSS 309

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               LL+ M+     P   T+  +I+  CK      A + F+++++ G   +T++Y  +I
Sbjct: 310 YALHLLNLMIENGCKPSIATFCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMI 369

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G  K   +  A  ++ EM  K ++P+  T+N+++ G+ R    E+  RL +++   G  
Sbjct: 370 SGYVKARDISQANLLFEEMRTKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLL 429

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             +   +  +AGLC  GR DEA  L E + +KGI   V+ +N++I  Y   G
Sbjct: 430 HDSSLCDVTVAGLCWAGRYDEAMKLLENLLEKGIPPSVVAFNSIIAAYGNAG 481



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 95/414 (22%), Positives = 165/414 (39%), Gaps = 96/414 (23%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL--I 154
           G +P+  + ++LF  L+ A      +K+  D +   G  PN  +  L I   C  G   I
Sbjct: 217 GVTPNPSAISILFRLLIRAGDCGAVWKLFGDVV-RKGPCPNNFTFNLLILEFCRKGWTRI 275

Query: 155 EEAFCAFSKLKEMGVF---GSIKTWNSAL-LGCIKIDRTDLVWKLYHDLIESG------- 203
            EA      L  MG F     + ++N  +   C+K  ++     L + +IE+G       
Sbjct: 276 GEAL-----LHVMGKFRCEPDVYSYNIVINANCLK-GQSSYALHLLNLMIENGCKPSIAT 329

Query: 204 --YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +I AFC +G V    +   ++ + GL      +N +IS + + ++  + + L   M 
Sbjct: 330 FCTIIDAFCKEGNVELARKYFDEIEDMGLSQNTIVYNIMISGYVKARDISQANLLFEEMR 389

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            ++  PD  T+  ++ G  +  K  +  R+  DL   G + D+ +    + GLC  G   
Sbjct: 390 TKDIVPDGITFNTLVAGHYRYGKEEDGNRLLRDLSVSGLLHDSSLCDVTVAGLCWAGRYD 449

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGY-------------------------------- 349
           +A K+   ++ KG+ P+   +NS+I  Y                                
Sbjct: 450 EAMKLLENLLEKGIPPSVVAFNSIIAAYGNAGLEERAFYAYGIMVKFGLTPSSSTCSSLL 509

Query: 350 ---CRIDNLEEAKRLHKEMLDKGYGETTVTYNTL-------------------------- 380
               R  +L+EA     +M+DKG+  T + +  L                          
Sbjct: 510 ISLVRKGSLDEAWIALYDMIDKGFPVTNMAFTVLLDGYFRIGAVNMAESLWNEMKGRGVF 569

Query: 381 ---------IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                    I GLC+ G   +AY +F +M +KG   +   YN+LI G+CK GK+
Sbjct: 570 PDAVAFAAFINGLCISGLMTDAYDVFSDMLRKGFVPNNFVYNSLIGGFCKVGKL 623


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 141/264 (53%), Gaps = 12/264 (4%)

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYE-L 221
           +I T+   + GC +  R +L    +  L+ +G          +++  C   +  +  + L
Sbjct: 7   TIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKVL 66

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGL 279
           LR++ E G VP+  ++  ++ R C+     +  +LL  M       +PD  TY  VI+G 
Sbjct: 67  LRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGF 126

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            K  K  +A  +++++ ++G+VPD V + ++I+ LCK   + +A  +  +M+  G+ PN+
Sbjct: 127 FKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNK 186

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TY SMIHGY  +   EEA ++ +EM  +G     V++N+ +  LC HGR+ EA  +F  
Sbjct: 187 VTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYS 246

Query: 400 MAQKGIFRDVITYNTLIQGYCKEG 423
           MA KG   +++TY  L+ GY  EG
Sbjct: 247 MAAKGHRPNIVTYGILLHGYATEG 270



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/354 (25%), Positives = 159/354 (44%), Gaps = 16/354 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLEL 143
           L + FF  L    G   D  + N +   L   +    A KV +  +   G  P+  S  +
Sbjct: 26  LGLAFFGRLL-RTGLKADKTAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAI 84

Query: 144 YIQCLCESGLIEEAFCAFSKL-KEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC+    ++A      + KE GV    + T+N+ + G  K  +      LYH++++
Sbjct: 85  VLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQ 144

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+         +I A C    V     LLRQ++++G+ P    +  +I  +     +  
Sbjct: 145 QGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEE 204

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
            +++   M  R   PD  ++   ++ LCK  +  EA  +F  +  +G+ P+ V Y  ++H
Sbjct: 205 ATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLH 264

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G    G   D    +  M   G++ N   +  +I  Y +   ++EA  +  EM  +G   
Sbjct: 265 GYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSP 324

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              TY+TLI+ LC  GR  +A   F +M   G+  + + Y++LIQG+C  G +V
Sbjct: 325 DVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLV 378



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 147/339 (43%), Gaps = 15/339 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF-C 159
           P + +  V+ +    AR  ++ + F   L  TG   +  +    ++CLC +   ++A   
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----------DLIESGYLIQA 208
              ++ E+G      ++   L      +R+     L             D++    +I  
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYNTVIHG 125

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F  +GK+ +   L  ++++ G VP+    N +I+  C+ +       LL  MV     P+
Sbjct: 126 FFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNGVPPN 185

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G     +  EA ++F ++  RG +PD V + + +  LCK G   +A ++++
Sbjct: 186 KVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFY 245

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  PN  TY  ++HGY       +       M   G     + +  LI      G
Sbjct: 246 SMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRG 305

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             DEA  +  EM  +G+  DV TY+TLI   C+ G++ +
Sbjct: 306 MMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLAD 344



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/433 (23%), Positives = 178/433 (41%), Gaps = 67/433 (15%)

Query: 53  TKPRWEQT-----------LLSDIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHY 100
           T  RWE+            L+ DI S+N F D L      K+   +  S+       +  
Sbjct: 198 TLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAAEIFYSM-------AAK 250

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+  +L         F   M F ++    G   N     + I    + G+++EA
Sbjct: 251 GHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEA 310

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               S+++  G+   + T+++ +    ++ R       ++ +I +G          LIQ 
Sbjct: 311 MLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQG 370

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAF------------------------------- 237
           FC  G + +  EL+ +++ +G+   N AF                               
Sbjct: 371 FCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERS 430

Query: 238 -----NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
                N LI  +C     G+   +L  M++    PD FTY  ++NG  KS +  +   +F
Sbjct: 431 DIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLF 490

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            ++ ++   P TV Y  ++ GL + G    A+KM  EMI  G   +  TYN ++ G CR 
Sbjct: 491 REMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRN 550

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           +  +EA  + +++          T NT+I  +    R +EA  LF  ++  G+  +  TY
Sbjct: 551 NCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTY 610

Query: 413 NTLIQGYCKEGKI 425
             +I+   KEG +
Sbjct: 611 GIMIRNLLKEGSV 623



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/279 (19%), Positives = 111/279 (39%), Gaps = 9/279 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN       +  +C+ G + +A   F  +K++G    I  +N+ + G   +      + +
Sbjct: 395 PNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSV 454

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +I +G          L+  +   G++ +G  L R++ +  + P    +N ++     
Sbjct: 455 LDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFR 514

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   ++LH M+         TY  ++ GLC++    EA  +F  L       +   
Sbjct: 515 AGRTVAAQKMLHEMIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITT 574

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
             T+I+ +  +    +A+ ++  +   GL+PN  TY  MI    +  ++EEA  +   M 
Sbjct: 575 LNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSME 634

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
             G    +   N  I  L   G   +A +   ++  K I
Sbjct: 635 KSGCAPCSRLLNDTIRTLLEKGEIVKAGNYMSKVDGKSI 673


>gi|218196467|gb|EEC78894.1| hypothetical protein OsI_19266 [Oryza sativa Indica Group]
 gi|222630938|gb|EEE63070.1| hypothetical protein OsJ_17878 [Oryza sativa Japonica Group]
          Length = 939

 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 175/339 (51%), Gaps = 13/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEA-RAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L SCN L + LV++      AM +  +   G  P+  ++ +  +  C  G + +A
Sbjct: 178 GCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQA 237

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                +++ MG+  ++  +++ +     +  T+   ++   L   G          L++ 
Sbjct: 238 VEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKG 297

Query: 209 FCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           +C DG++ E   +++++ E G +V +  A+  +I+ +C++      + + + M       
Sbjct: 298 YCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHV 357

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + F Y  +INGLCK  +  E  +V  ++++ G  PD   Y T+I G C+ G +  A +M 
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  GL     TYN+++ G+C +  +++A RL   ML +G     ++ +TL+ GL   
Sbjct: 418 RMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKA 477

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G+T++A +L++E   +G+ ++VIT+NT+I G CK G++ 
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMA 516



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 144/300 (48%), Gaps = 25/300 (8%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           ++ L   G SPN  +  L ++  C+ G +EEA     ++KE G                 
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETG----------------- 318

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
               D+V     D +  G +I  +C  G++ +   +  ++ + G+      +N +I+  C
Sbjct: 319 ----DIVV----DEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLC 370

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +      V ++L  M      PD ++Y  +I+G C+     +A+ +   +   G    T+
Sbjct: 371 KLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTL 430

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T++ G C +  + DA ++WF M+ +G+ PNE + ++++ G  +    E+A  L KE 
Sbjct: 431 TYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKET 490

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L +G  +  +T+NT+I GLC  GR  EA  L + M +     D +TY TL  GYCK G++
Sbjct: 491 LARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQL 550



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 167/339 (49%), Gaps = 15/339 (4%)

Query: 101 GFSPDLVSCNVLF-----DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           G SP++V+  +L      D  +E  A +V  +  ++     +  +  + I   C+ G ++
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRME-EAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMD 341

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A    +++++ G+  ++  +N+ + G  K+ R + V K+  ++ + G          LI
Sbjct: 342 DATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLI 401

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C +G + + +E+ R ++ +GL      +N L+  FC          L   M+ R  A
Sbjct: 402 DGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVA 461

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +   +++GL K+ K  +A  ++ +   RG   + + + TVI+GLCK+G + +A ++
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M      P+  TY ++  GYC++  L  A  L  +M   G+  +   +N+ I G  +
Sbjct: 522 LDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFI 581

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  +   +  EM+ +G+  +++TY  LI G+CKEG +
Sbjct: 582 AKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNL 620



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 162/335 (48%), Gaps = 13/335 (3%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIE 155
           H GF+P +   N        A+ +    D    + + G SPN  +    I   C+ G + 
Sbjct: 562 HLGFAPSVEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLH 621

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVW-KLYHDLIESGYLIQAFC 210
           EA   + ++   G+  ++    SAL+ C     K+D  +LV  KL +  +  G  I    
Sbjct: 622 EACNLYFEMVNNGMNPNVFIC-SALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIE 680

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            D K+S    ++  + +      N  +N +I   C+         L  ++  +   PDNF
Sbjct: 681 ID-KISH---VVDTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNF 736

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+G   S    EA+ + + +   G  P+ + Y ++I+GLCK G L  A  ++ ++
Sbjct: 737 TYSSLIHGCAASGSIDEAFSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKL 796

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KG+ PN  TYN++I  YC+     EA +L ++M+++G   T +TY+ LI GLC  G  
Sbjct: 797 QSKGISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYM 856

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EA  L ++M +  +  + ITY TLI GY K G +
Sbjct: 857 EEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNM 891



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 1/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A  + G++S    +   + + G  P   + N+L+++  +  + G  + +   M    
Sbjct: 154 LLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAG 213

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD FT   +    C+  +  +A     +++  G   + V Y  V+   C MGW  DAR
Sbjct: 214 VLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDAR 273

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAG 383
           ++   +  KGL PN  TY  ++ GYC+   +EEA+R+ KEM + G      V Y  +I G
Sbjct: 274 RILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMING 333

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  GR D+A  +  EM   GI  ++  YNT+I G CK G++
Sbjct: 334 YCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRM 375



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/322 (25%), Positives = 140/322 (43%), Gaps = 23/322 (7%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G SP+LV+   L     +      A +    + + G +PN       + C  + G +
Sbjct: 596 SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKV 655

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------Y 204
           +EA     KL  + +           +  I+ID+   V     D I  G           
Sbjct: 656 DEANLVLQKLVNIDMIPGCS------ISTIEIDKISHVV----DTIADGNPHSANVMWNV 705

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C  G++++   L   +     +P+N  ++ LI       +      L   M++  
Sbjct: 706 IIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAG 765

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +I GLCKS K   A  +FN L+ +G  P+ + Y T+I   CK G   +A 
Sbjct: 766 LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAF 825

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+  +M+ +G+ P   TY+ +I+G C    +EEA +L  +M++       +TY TLI G 
Sbjct: 826 KLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGY 885

Query: 385 CLHGRTDEAYHLFEEMAQKGIF 406
              G  +E   L++EM  +G+ 
Sbjct: 886 IKSGNMEEISKLYDEMHIRGLL 907



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/363 (22%), Positives = 150/363 (41%), Gaps = 38/363 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  S N L D      + + A +    +   G +    +    ++  C    I++A
Sbjct: 389 GMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDA 448

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              +  + + GV  +  + ++ L G  K  +T+    L+ + +  G          +I  
Sbjct: 449 LRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVING 508

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+++E  ELL ++ E    P++  +  L   +C+    G  + L++ M     AP 
Sbjct: 509 LCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPS 568

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              +   I G   +++  +   + +++  RG  P+ V Y  +I G CK G L +A  ++F
Sbjct: 569 VEMFNSFITGHFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYF 628

Query: 329 EMIHKGLLPNEYTYNSMIHGY------------------------CRIDNLEEAKRLH-- 362
           EM++ G+ PN +  ++++  +                        C I  +E  K  H  
Sbjct: 629 EMVNNGMNPNVFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVV 688

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             + D       V +N +I GLC  GR  +A  LFE +  K    D  TY++LI G    
Sbjct: 689 DTIADGNPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAAS 748

Query: 423 GKI 425
           G I
Sbjct: 749 GSI 751



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 61/220 (27%), Positives = 96/220 (43%), Gaps = 13/220 (5%)

Query: 137 NPNSLELY----IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           NP+S  +     I  LC+SG I +A   F  L+         T++S + GC      D  
Sbjct: 695 NPHSANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEA 754

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           + L   ++ +G          LI   C  GK+S    L  ++   G+ P    +N LI  
Sbjct: 755 FSLRDVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDE 814

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C++       +L   MV     P   TY  +I GLC      EA ++ + + E    P+
Sbjct: 815 YCKEGKTTEAFKLKQKMVEEGIQPTVITYSILIYGLCTQGYMEEAIKLLDQMIENNVDPN 874

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
            + Y T+IHG  K G + +  K++ EM  +GLLP  +  N
Sbjct: 875 YITYCTLIHGYIKSGNMEEISKLYDEMHIRGLLPTNWIGN 914



 Score = 38.5 bits (88), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 59/133 (44%), Gaps = 6/133 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELY 144
           ++  F  L S  G SP+ ++ N L D   +      AFK+    ++  G  P   +  + 
Sbjct: 789 AVNLFNKLQSK-GISPNGITYNTLIDEYCKEGKTTEAFKLKQKMVEE-GIQPTVITYSIL 846

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC  G +EEA     ++ E  V  +  T+ + + G IK    + + KLY ++   G 
Sbjct: 847 IYGLCTQGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIRGL 906

Query: 205 LIQAFCNDGKVSE 217
           L   +  + K S+
Sbjct: 907 LPTNWIGNWKRSD 919


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 169/374 (45%), Gaps = 49/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSP-NPNSLELYIQCLCESGLIE 155
           G  PDL S  +L   L + +  + A+D L    D  G  P +  +    I  L   G ++
Sbjct: 166 GCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGRCPLDVVAYTTVINGLLREGQLD 225

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A+  F  + + G    + T++S +    K    D   +++  ++++G          L+
Sbjct: 226 KAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLV 285

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C+ GK  E   + +++   G+ P+   +  L+   C+        ++  ++V R   
Sbjct: 286 HGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHK 345

Query: 267 PDNFTYEEVINGLC-----------------------------------KSRKRLEAYRV 291
           PD+ TY  +++G                                     K  K  EA  V
Sbjct: 346 PDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLV 405

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           F++++++G  PD V Y TV+  LC  G + DA   +  +  +GL PN   + ++IHG C 
Sbjct: 406 FSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCT 465

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D  ++ + L  EM+D+G    T+ +N ++  LC  GR  EA +LF+ M + GI  +  T
Sbjct: 466 CDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNT 525

Query: 412 YNTLIQGYCKEGKI 425
           YNTLI GYC +GK+
Sbjct: 526 YNTLIDGYCLDGKM 539



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ + +  +L + +A   A      +   G  P+       +   C SG  +EA
Sbjct: 238 GPSPDVVTYSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEA 297

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F K+   GV   + T+ + +    K  ++    K++  L++ G+         L+  
Sbjct: 298 IGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHG 357

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +G + E ++LL  +++ G+   +  FN ++  + +         +   M  +   PD
Sbjct: 358 YATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEALLVFSNMRQQGLNPD 417

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  V++ LC + +  +A   FN LK  G  P+ V++TT+IHGLC         ++ F
Sbjct: 418 IVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEELAF 477

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI +G+  +   +N+++   C+   + EAK L   M+  G    T TYNTLI G CL G
Sbjct: 478 EMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDG 537

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + DEA  L   M   G+    +TYNT+I GY + G+I
Sbjct: 538 KMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRI 574



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 16/286 (5%)

Query: 157 AFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA----- 208
           A   F+++   G   +   I T+   +  C ++ R DL +     +I +G   +      
Sbjct: 80  AISLFNRMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQS 139

Query: 209 -----FCNDGKVSEGYEL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
                 C  G  +   ++ LR++ E G  P+  ++  L+   C+ K   +  +LLH M  
Sbjct: 140 SSQGPLCTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMAD 199

Query: 263 -RNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            + R P D   Y  VINGL +  +  +AY +F+ + +RG  PD V Y+++I  L K   +
Sbjct: 200 HKGRCPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAM 259

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
             A +++  M+  G++P+   Y S++HGYC     +EA  + K+M   G     VTY  L
Sbjct: 260 DKATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTAL 319

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +  LC +G++ EA  +F+ + ++G   D  TY TL+ GY  EG +V
Sbjct: 320 MDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALV 365



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 142/325 (43%), Gaps = 15/325 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYI 145
           +I  F+ +  H G  PD+V+   L D L +      A    DS    G  P+  +    +
Sbjct: 297 AIGIFKKMCRH-GVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLL 355

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVWK------L 195
                 G + E       + + G+      +N  ++G      K+D   LV+       L
Sbjct: 356 HGYATEGALVEMHDLLDLMMKKGMQLGHHIFN-MIMGAYAKHNKVDEALLVFSNMRQQGL 414

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
             D++  G ++   C  G+V +       +  +GL P    F  LI   C    + +V E
Sbjct: 415 NPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGLCTCDKWDKVEE 474

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M+ R    D   +  ++  LCK  + +EA  +F+ +   G  P+T  Y T+I G C
Sbjct: 475 LAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNTNTYNTLIDGYC 534

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
             G + +A K+   M+  G+ P++ TYN++I+GY +   +E+   L +EM  KG     V
Sbjct: 535 LDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIV 594

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY  L+ GL   GRT  A  L+  M
Sbjct: 595 TYEMLLQGLFQAGRTVAAKELYLRM 619



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/278 (23%), Positives = 106/278 (38%), Gaps = 12/278 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +   L        A     D LD     G     +   + +    +   ++EA
Sbjct: 343 GHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEA 402

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              FS +++ G+   I  + + L       R D     ++ L   G          LI  
Sbjct: 403 LLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHG 462

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K  +  EL  ++++ G+  +   FN ++   C+K        L   MV     P+
Sbjct: 463 LCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPN 522

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G C   K  EA ++   +   G  P  V Y T+I+G  + G + D   +  
Sbjct: 523 TNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNTIINGYSQNGRIEDGLTLLR 582

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           EM  KG+ P   TY  ++ G  +      AK L+  M+
Sbjct: 583 EMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRMI 620


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 174/394 (44%), Gaps = 66/394 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S  G+  D  +      SL ++  ++ A+  L+   F P+       I  LCE+ L EEA
Sbjct: 2   STMGYRMDEFTLGCFAHSLCKSGKWREALSLLEKEEFVPDTVLYTKMISGLCEASLFEEA 61

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               ++++      ++ T+   L GC+  ++     ++   +I  G          L+ A
Sbjct: 62  MDFLTRMRASSCLPNVLTYRILLCGCLNKEKLGRCKRILSMMITEGCYPSPRIFNSLVHA 121

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE------------KKNFGRVSE- 255
           +C  G  +  Y+LL+++++ G  P    +N LI   C             +K +G + E 
Sbjct: 122 YCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDVLDLAEKAYGEMLEA 181

Query: 256 ---------------------------LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
                                      ++  M+++   PD  TY +VI  LC + K  +A
Sbjct: 182 GVVLNKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKA 241

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           +++F ++K  G  PD  +YTT+I   CK G++  AR  + EM   G  PN  TY ++IH 
Sbjct: 242 FQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHA 301

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI--- 405
           Y +   + +A  +++ ML KG     VTY  LI GLC  G+ ++A  +++ M ++ +   
Sbjct: 302 YLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIP 361

Query: 406 -----FR---------DVITYNTLIQGYCKEGKI 425
                FR         +V TY  L+ G CK  ++
Sbjct: 362 DVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQV 395



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 154/332 (46%), Gaps = 27/332 (8%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +A+ V  + + S GF P+ ++    I  LC +  +E+AF  F ++K  G+   +  + + 
Sbjct: 205 KAYNVIREMM-SKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTL 263

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K    +     + ++   G          LI A+    KVS+  E+   +L  G 
Sbjct: 264 IDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGC 323

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARN-----------------RAPDNFTYE 273
            P    +  LI   C+     + S++   M   N                   P+ FTY 
Sbjct: 324 TPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYG 383

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +++GLCK+ +  EA  +   +   G  P+ V+Y  +I G CK G L +A++++  M+  
Sbjct: 384 ALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLEC 443

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  PN YTY+S+I    +   L+ A ++  +ML+       V Y  +I GLC  G+TDEA
Sbjct: 444 GYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEA 503

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y L   M +KG   +V+TY  +I G+ K G++
Sbjct: 504 YKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRV 535



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 157/331 (47%), Gaps = 24/331 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + +++R    A    + + S G +PN  +    I  LC++G IE+A
Sbjct: 287 GCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKA 346

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------DLIESGYLIQAFCN 211
              +  +K+  V               +I   D+ +++        ++   G L+   C 
Sbjct: 347 SQIYKIMKKENV---------------EIPDVDMHFRVVDGASNEPNVFTYGALVDGLCK 391

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V E  +LL+ +  +G  P +  ++ LI   C+        E+  TM+     P+ +T
Sbjct: 392 AYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYT 451

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ L K ++   A +V + + E    P+ V+YT +I GLCK+G   +A K+   M 
Sbjct: 452 YSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMME 511

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TY +MI G+ +   +E+   L ++M  KG     VTY  LI   C  G  D
Sbjct: 512 EKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLD 571

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EA+ L EEM Q    R V  Y  +I+G+ +E
Sbjct: 572 EAHKLLEEMKQTYWPRHVAGYRKVIEGFNRE 602



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 153/352 (43%), Gaps = 29/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + +   L  A   + A      +   G +P+       I   C++G IE+A
Sbjct: 217 GFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQA 276

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F +++  G   ++ T+ + +   +K  +     ++Y  ++  G          LI  
Sbjct: 277 RNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDG 336

Query: 209 FCNDGKV---SEGYELLRQV------------LEDGLVPENTAFN--KLISRFCEKKNFG 251
            C  GK+   S+ Y+++++             + DG   E   F    L+   C+     
Sbjct: 337 LCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVK 396

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              +LL +M      P++  Y+ +I+G CK+ K  EA  VF  + E GY P+   Y+++I
Sbjct: 397 EARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLI 456

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             L K   L  A K+  +M+     PN   Y  MI G C++   +EA +L   M +KG  
Sbjct: 457 DRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCN 516

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              VTY  +I G    GR ++   L ++M+ KG   + +TY  LI   C  G
Sbjct: 517 PNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTG 568



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 143/329 (43%), Gaps = 16/329 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ +   L D L +A   K A D L S    G  PN    +  I   C++G ++EA   
Sbjct: 377 PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEV 436

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F+ + E G   ++ T++S +    K  R DL  K+   ++E+           +I   C 
Sbjct: 437 FTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCK 496

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  E Y+L+  + E G  P    +  +I  F +     +  ELL  M ++  AP+  T
Sbjct: 497 VGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVT 556

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +IN  C +    EA+++  ++K+  +      Y  VI G  +      +  + FE+ 
Sbjct: 557 YRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNR--EFIASLYLSFEIS 614

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--LDKGYGETTVTYNTLIAGLCLHGR 389
               +P    Y  +I  + +   LE A  L++E+             + TLI  L L  +
Sbjct: 615 ENDSVPVAPVYRVLIDNFIKAGRLEIALELNEELSSFSPFSAANQNIHITLIENLSLAHK 674

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            D+A+ L+ +M  +G   ++     LI+G
Sbjct: 675 ADKAFELYADMISRGSIPELSILVHLIKG 703


>gi|50878351|gb|AAT85126.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 920

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 175/339 (51%), Gaps = 13/339 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEA-RAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L SCN L + LV++      AM +  +   G  P+  ++ +  +  C  G + +A
Sbjct: 178 GCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAGVLPDEFTVAIMAKAYCRDGRVAQA 237

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                +++ MG+  ++  +++ +     +  T+   ++   L   G          L++ 
Sbjct: 238 VEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDARRILESLQRKGLSPNVVTYTLLVKG 297

Query: 209 FCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           +C DG++ E   +++++ E G +V +  A+  +I+ +C++      + + + M       
Sbjct: 298 YCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHV 357

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + F Y  +INGLCK  +  E  +V  ++++ G  PD   Y T+I G C+ G +  A +M 
Sbjct: 358 NLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMC 417

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M+  GL     TYN+++ G+C +  +++A RL   ML +G     ++ +TL+ GL   
Sbjct: 418 RMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKA 477

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G+T++A +L++E   +G+ ++VIT+NT+I G CK G++ 
Sbjct: 478 GKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMA 516



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 144/300 (48%), Gaps = 25/300 (8%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           ++ L   G SPN  +  L ++  C+ G +EEA     ++KE G                 
Sbjct: 276 LESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETG----------------- 318

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
               D+V     D +  G +I  +C  G++ +   +  ++ + G+      +N +I+  C
Sbjct: 319 ----DIVV----DEVAYGMMINGYCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLC 370

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +      V ++L  M      PD ++Y  +I+G C+     +A+ +   +   G    T+
Sbjct: 371 KLGRMEEVQKVLQEMEDVGMRPDKYSYNTLIDGYCREGSMRKAFEMCRMMVRNGLAATTL 430

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y T++ G C +  + DA ++WF M+ +G+ PNE + ++++ G  +    E+A  L KE 
Sbjct: 431 TYNTLLKGFCSLHAIDDALRLWFLMLKRGVAPNEISCSTLLDGLFKAGKTEQALNLWKET 490

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L +G  +  +T+NT+I GLC  GR  EA  L + M +     D +TY TL  GYCK G++
Sbjct: 491 LARGLAKNVITFNTVINGLCKIGRMAEAEELLDRMKELRCPPDSLTYRTLFDGYCKLGQL 550



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 167/339 (49%), Gaps = 15/339 (4%)

Query: 101 GFSPDLVSCNVLF-----DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           G SP++V+  +L      D  +E  A +V  +  ++     +  +  + I   C+ G ++
Sbjct: 283 GLSPNVVTYTLLVKGYCKDGRME-EAERVVKEMKETGDIVVDEVAYGMMINGYCQRGRMD 341

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           +A    +++++ G+  ++  +N+ + G  K+ R + V K+  ++ + G          LI
Sbjct: 342 DATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRMEEVQKVLQEMEDVGMRPDKYSYNTLI 401

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             +C +G + + +E+ R ++ +GL      +N L+  FC          L   M+ R  A
Sbjct: 402 DGYCREGSMRKAFEMCRMMVRNGLAATTLTYNTLLKGFCSLHAIDDALRLWFLMLKRGVA 461

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+  +   +++GL K+ K  +A  ++ +   RG   + + + TVI+GLCK+G + +A ++
Sbjct: 462 PNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEAEEL 521

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
              M      P+  TY ++  GYC++  L  A  L  +M   G+  +   +N+ I G  +
Sbjct: 522 LDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITGHFI 581

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  +   +  EM+ +G+  +++TY  LI G+CKEG +
Sbjct: 582 AKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNL 620



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 165/362 (45%), Gaps = 38/362 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ +SC+ L D L +A   + A++    T   G + N  +    I  LC+ G + EA
Sbjct: 459 GVAPNEISCSTLLDGLFKAGKTEQALNLWKETLARGLAKNVITFNTVINGLCKIGRMAEA 518

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR----TDLVWKLYH-DLIESGYLIQAFCND 212
                ++KE+       T+ +   G  K+ +    T L+ K+ H     S  +  +F   
Sbjct: 519 EELLDRMKELRCPPDSLTYRTLFDGYCKLGQLGTATHLMNKMEHLGFAPSVEMFNSFITG 578

Query: 213 GKVSEGYELLRQVLED----GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             +++ +  +  +  +    GL P    +  LI+ +C++ N      L   MV     P+
Sbjct: 579 HFIAKQWHKVNDIHSEMSARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPN 638

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP----------------DT-------- 304
            F    +++   K  K  EA  V   L     +P                DT        
Sbjct: 639 VFICSALMSCFYKEGKVDEANLVLQKLVNIDMIPGCSISTIEIDKISHVVDTIADGNPHS 698

Query: 305 --VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
             VM+  +I GLCK G + DA+ ++  + +K  LP+ +TY+S+IHG     +++EA  L 
Sbjct: 699 ANVMWNVIIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLR 758

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             ML  G     +TYN+LI GLC  G+   A +LF ++  KGI  + ITYNTLI  YCKE
Sbjct: 759 DVMLSAGLTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKE 818

Query: 423 GK 424
           GK
Sbjct: 819 GK 820



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 1/222 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A  + G++S    +   + + G  P   + N+L+++  +  + G  + +   M    
Sbjct: 154 LLRAHADAGQLSSALNVFDGMGKVGCRPSLRSCNRLLNKLVQSGDPGMAAMVYGQMRIAG 213

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD FT   +    C+  +  +A     +++  G   + V Y  V+   C MGW  DAR
Sbjct: 214 VLPDEFTVAIMAKAYCRDGRVAQAVEFVEEMEGMGLEVNLVAYHAVMDCYCGMGWTEDAR 273

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAG 383
           ++   +  KGL PN  TY  ++ GYC+   +EEA+R+ KEM + G      V Y  +I G
Sbjct: 274 RILESLQRKGLSPNVVTYTLLVKGYCKDGRMEEAERVVKEMKETGDIVVDEVAYGMMING 333

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C  GR D+A  +  EM   GI  ++  YNT+I G CK G++
Sbjct: 334 YCQRGRMDDATRVRNEMRDAGIHVNLFVYNTMINGLCKLGRM 375



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 125/301 (41%), Gaps = 39/301 (12%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G SP+LV+   L     +      A +    + + G +PN       + C  + G +
Sbjct: 596 SARGLSPNLVTYGALIAGWCKEGNLHEACNLYFEMVNNGMNPNVFICSALMSCFYKEGKV 655

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------Y 204
           +EA     KL  + +           +  I+ID+   V     D I  G           
Sbjct: 656 DEANLVLQKLVNIDMIPGCS------ISTIEIDKISHVV----DTIADGNPHSANVMWNV 705

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I   C  G++++   L   +     +P+N  ++ LI       +      L   M++  
Sbjct: 706 IIFGLCKSGRIADAKSLFESLRNKRFLPDNFTYSSLIHGCAASGSIDEAFSLRDVMLSAG 765

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG------ 318
             P+  TY  +I GLCKS K   A  +FN L+ +G  P+ + Y T+I   CK G      
Sbjct: 766 LTPNIITYNSLIYGLCKSGKLSRAVNLFNKLQSKGISPNGITYNTLIDEYCKEGKTTEAF 825

Query: 319 ----------WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
                     ++ +A K+  +MI   + PN  TY ++IHGY +  N+EE  +L+ EM  +
Sbjct: 826 KLKQKMVEEGYMEEAIKLLDQMIENNVDPNYITYCTLIHGYIKSGNMEEISKLYDEMHIR 885

Query: 369 G 369
           G
Sbjct: 886 G 886


>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
          Length = 650

 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 166/341 (48%), Gaps = 35/341 (10%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           ++  FQ +H  +G  P + S N L ++L+E+  +  A  F    ++ G SPN  +  + I
Sbjct: 97  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 156

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK--LYHDLIESG 203
           +  C           F K KE+                      + +W+     D+   G
Sbjct: 157 KISCRKK-------QFDKAKEL---------------------LNWMWEQGFSPDVFSYG 188

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV-A 262
            LI +   +G +S+  +L  ++ E G+ P+   +N LI  F +K +    SE+   ++  
Sbjct: 189 TLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG 248

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
            +  P+  +Y  +INGLCK  K  E++ +++ +K+     D   Y+T+IHGLC  G L  
Sbjct: 249 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG 308

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM   G+ P+   YN+M++GY R   +EE   L K M  +G   T V+YN LI 
Sbjct: 309 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGC-RTVVSYNILIR 367

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           GL  + + DEA  ++E + +K    D +TY  L+ G CK G
Sbjct: 368 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNG 408



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 165/338 (48%), Gaps = 34/338 (10%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           RF  + H+ Y F   L     LFD  + A   ++           P   +L + I+   +
Sbjct: 35  RFPGYSHTPYVFHHIL---KRLFDPKLVAHVSRIVELIRTQKCKCPEDVALTV-IKAYAK 90

Query: 151 SGLIEEAFCAFSKLKEM-GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209
           + + ++A   F ++ E+ G    I+++NS                L + LIES       
Sbjct: 91  NSMPDQALDIFQRMHEIFGCQPGIRSYNS----------------LLNALIES------- 127

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            N    +E + L  + +  GL P    +N LI   C KK F +  ELL+ M  +  +PD 
Sbjct: 128 -NKWDEAESFFLYFETM--GLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDV 184

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           F+Y  +IN L K+    +A ++F+++ ERG  PD   Y  +I G  K G + +A ++W E
Sbjct: 185 FSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIW-E 243

Query: 330 MIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            + KG  + PN  +YN MI+G C+    +E+  +   M     G+   TY+TLI GLC  
Sbjct: 244 RLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGS 303

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  D A  +++EMA+ G+  DV+ YNT++ GY + G+I
Sbjct: 304 GNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRI 341



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 169/379 (44%), Gaps = 16/379 (4%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           E+ +  D+  +N     FF+     + ++L +   ++ L       P++ S NV+ + L 
Sbjct: 212 ERGVTPDVACYNILIDGFFK-----KGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 266

Query: 118 EARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +   F  + +       +     L  Y   I  LC SG ++ A   + ++ E GV   + 
Sbjct: 267 KCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVV 326

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVL 226
            +N+ L G ++  R +   +L+  + + G         LI+    + KV E   +   + 
Sbjct: 327 VYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLP 386

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E     ++  +  L+   C+     +   +L          D F Y  +INGLC+  +  
Sbjct: 387 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 446

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           E   V + + + G  P+  +   VI+G  +   L DA + +  M+ KG  P   TYN++I
Sbjct: 447 EVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 506

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           +G  + +   EA  L KEML KG+    +TY+ L+ GLC   + D A +L+ +  +KG  
Sbjct: 507 NGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFK 566

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DV  +N +I G C  GK+
Sbjct: 567 PDVKMHNIIIHGLCSSGKV 585



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 32/338 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           FF +  +  G SP+L + N+L       + F  A + L+     GFSP+  S    I  L
Sbjct: 136 FFLYFET-MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSL 194

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
            ++G + +A   F ++ E GV   +  +N                           LI  
Sbjct: 195 AKNGYMSDALKLFDEMPERGVTPDVACYN--------------------------ILIDG 228

Query: 209 FCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           F   G +    E+  ++L+   V P   ++N +I+  C+   F    E+ H M    R  
Sbjct: 229 FFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 288

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +TY  +I+GLC S     A RV+ ++ E G  PD V+Y T+++G  + G + +  ++W
Sbjct: 289 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 348

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  +G      +YN +I G      ++EA  + + + +K     ++TY  L+ GLC +
Sbjct: 349 KVMEKEGCR-TVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKN 407

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  ++A  + EE        D   Y+++I G C+EG++
Sbjct: 408 GYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRL 445



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 126/275 (45%), Gaps = 16/275 (5%)

Query: 106 LVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
           +VS N+L   L E      A+   + L       +  +  + +  LC++G + +A     
Sbjct: 359 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 418

Query: 163 KLKEMGVFGSIKT--WNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
           +  E G  G + T  ++S + G  +  R D V  +   + + G          +I  F  
Sbjct: 419 E-AENGR-GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVR 476

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K+ +       ++  G  P    +N LI+   + + F     L+  M+ +   P+  T
Sbjct: 477 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMIT 536

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLC+ +K   A  ++    E+G+ PD  M+  +IHGLC  G + DA +++ EM 
Sbjct: 537 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 596

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
            +  +PN  T+N+++ G+ ++ + E A ++   +L
Sbjct: 597 QRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHIL 631



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 7/196 (3%)

Query: 236 AFNKLISRFCEKK---NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
            F+ ++ R  + K   +  R+ EL+ T   + + P++     VI    K+    +A  +F
Sbjct: 45  VFHHILKRLFDPKLVAHVSRIVELIRTQ--KCKCPEDVALT-VIKAYAKNSMPDQALDIF 101

Query: 293 NDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             + E  G  P    Y ++++ L +     +A   +      GL PN  TYN +I   CR
Sbjct: 102 QRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCR 161

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               ++AK L   M ++G+     +Y TLI  L  +G   +A  LF+EM ++G+  DV  
Sbjct: 162 KKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVAC 221

Query: 412 YNTLIQGYCKEGKIVN 427
           YN LI G+ K+G I+N
Sbjct: 222 YNILIDGFFKKGDILN 237



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 98/233 (42%), Gaps = 28/233 (12%)

Query: 118 EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           E R  +VA  +D +   G  PNP+     I     +  +E+A   F  +   G F ++ T
Sbjct: 442 EGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 501

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           +N+ + G  K +R                           SE Y L++++L  G  P   
Sbjct: 502 YNTLINGLSKAER--------------------------FSEAYALVKEMLHKGWKPNMI 535

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            ++ L++  C+ K       L    + +   PD   +  +I+GLC S K  +A ++++++
Sbjct: 536 TYSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEM 595

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           K+R  VP+ V + T++ G  K+     A K+W  ++      N Y       G
Sbjct: 596 KQRKCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQSWSSSNCYYMEHTCQG 648


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 163/335 (48%), Gaps = 12/335 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P+L S N+L D L +A   + A+   DS    G  PN  ++ + I  LC++  ++EA  
Sbjct: 408 APNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACS 467

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
            F  L          T+ S + G  +  + +  + LY  +++SG          LI+ F 
Sbjct: 468 IFLGLDHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFF 527

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+  +G+++ ++++  G  P+    N  +    +     +   L   + A+   PD  
Sbjct: 528 KCGRKEDGHKIYKEMMHRGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVR 587

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +Y  +I+GL K     + Y++F ++KE+G   DT  Y  VI G CK G +  A ++  EM
Sbjct: 588 SYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEM 647

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             KGL P   TY S+I G  +ID L+EA  L +E   K      V Y++LI G    GR 
Sbjct: 648 KTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRI 707

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           DEAY + EE+ QKG+  +  T+N L+    K  +I
Sbjct: 708 DEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEI 742



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 78/294 (26%), Positives = 148/294 (50%), Gaps = 26/294 (8%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G SP+   L  Y+ C+ ++G IE+    F ++K  G+   +++++               
Sbjct: 546 GCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSI-------------- 591

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
             L H L++ G+            + Y+L  ++ E GL  +  A+N +I  FC+     +
Sbjct: 592 --LIHGLVKGGF----------SKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNK 639

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M  +   P   TY  VI+GL K  +  EAY +F + K +    + V+Y+++I 
Sbjct: 640 AYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLID 699

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           G  K+G + +A  +  E++ KGL PN YT+N ++    + + ++EA    + M +     
Sbjct: 700 GFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPP 759

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             VTY+ ++ GLC   + ++A+  ++EM ++G+  + ITY T+I G  + G ++
Sbjct: 760 NEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVL 813



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 165/385 (42%), Gaps = 36/385 (9%)

Query: 47  VCKITRTKPRWEQTLLSDIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLH--SHYGFS 103
           VC++  T P W   L   + +F+    P      +++  +V +++ +F+W+   +    S
Sbjct: 73  VCRVLDTYP-WGAALEDALNTFDEMPQPELVVGVIRRLKDVRVALHYFRWVERKTKQLHS 131

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+  + N L   +   R  +     L+     GF P+ N+    +    +S  + EAF  
Sbjct: 132 PE--AYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAF-- 187

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
                  GV  +++ +           +    +  Y  LI  G L  A   D  ++    
Sbjct: 188 -------GVIETMRKF-----------KFRPAYSAYTTLI--GALSAAHEADPMLT---- 223

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LLRQ+ E G       F  LI  F  +        LL  M + +   D   Y   I+   
Sbjct: 224 LLRQMQEIGYEVTVHLFTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFG 283

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  K   A++ F++LK +G VPD V +T++I  LCK   + +A +++ E+     +P  Y
Sbjct: 284 KVGKVDMAWKFFHELKSQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVY 343

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            YN+MI GY  +    EA  L +    KG   + + YN ++  L   G+ +EA  + E M
Sbjct: 344 AYNTMIMGYGSVGKFNEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAM 403

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
                  ++ +YN LI   CK G++
Sbjct: 404 KMDAA-PNLTSYNILIDMLCKAGEL 427



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 121/305 (39%), Gaps = 47/305 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+ S ++L   LV+    K        +   G   +  +  + I   C+SG + +A
Sbjct: 581 GLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKA 640

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------LIESGYLIQA 208
           +    ++K  G+  ++ T+ S + G  KIDR D  + L+ +         ++    LI  
Sbjct: 641 YQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDG 700

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKL---------------------------- 240
           F   G++ E Y +L ++++ GL P    +N L                            
Sbjct: 701 FGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPN 760

Query: 241 -------ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
                  ++  C+ + F +       M  +   P+  TY  +I+GL +    LEA  +F 
Sbjct: 761 EVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFE 820

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
             K  G +PD+  Y  +I GL       DA  ++ E   KG      T   ++    + D
Sbjct: 821 RFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCVVLLDALHKAD 880

Query: 354 NLEEA 358
            LE+A
Sbjct: 881 CLEQA 885


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 10/303 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I+ LC+ G +++AF    ++   G   ++ T  + + G  K   T+  
Sbjct: 267 GLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKA 326

Query: 193 WKLYHDLIES----------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
           ++L+  L+ S            +I  +C D K++    LL ++ E GL P    +  LI 
Sbjct: 327 FRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLID 386

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C+  NF R  EL++ M     +P+  TY  +++GLCK  +  EAY+V       G   
Sbjct: 387 GHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDA 446

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D V YT +I   CK   +  A  ++ +M+  G+ P+ ++Y ++I  +CR   ++E++   
Sbjct: 447 DKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFF 506

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +E +  G   T  TY ++I G C  G    A   F  M+  G   D ITY  LI G CK+
Sbjct: 507 EEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLCKQ 566

Query: 423 GKI 425
            K+
Sbjct: 567 SKL 569



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 151/338 (44%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P++ +   L D L +     +AF++ +  + S    PN  +    I   C    +  
Sbjct: 302 GWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNR 361

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    S++KE G+  +  T+ + + G  K    +  ++L + + E G+         ++ 
Sbjct: 362 AEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTYNAIVD 421

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G+V E Y++L+    +GL  +   +  LIS  C++    +   L + MV     P
Sbjct: 422 GLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQALVLFNKMVKSGIQP 481

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  +Y  +I   C+ ++  E+   F +    G VP    YT++I G C+ G L  A K +
Sbjct: 482 DIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFF 541

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G   +  TY ++I G C+   L+EA+ L+  M++KG     VT  TL    C  
Sbjct: 542 HRMSDHGCASDSITYGALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKI 601

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                A  + E + +K   R   T NTL++  C E K+
Sbjct: 602 DDGCSAMVVLERLEKKLWVR---TVNTLVRKLCSERKV 636



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 118/232 (50%), Gaps = 7/232 (3%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           H++++   ++++F   G+V E  E++ ++   GL P     N ++    E         L
Sbjct: 132 HEVMQC--MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENL 189

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M AR   P+  +Y  ++ G CK    LE+ R    + ERG+V D    + ++   C+
Sbjct: 190 FDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCE 249

Query: 317 MGWLGDARKMWF--EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            G++   R +W+       GL PN   +  MI G C+  ++++A  + +EM+ +G+    
Sbjct: 250 KGFV--TRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNV 307

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
            T+  LI GLC  G T++A+ LF ++ +    + +V+TY  +I GYC++ K+
Sbjct: 308 YTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKM 359



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 46/82 (56%)

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+  +  I  ++EA  +  EM ++G   +T T N ++  +   G  + A +LF+EM  +G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           +  + ++Y  ++ GYCK G ++
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVL 219


>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
 gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
          Length = 684

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 145/301 (48%), Gaps = 13/301 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+    +  I  L   G + EA     ++  MG    + T+N  +LG   +      
Sbjct: 210 GCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDVVLGLCGLGHVREA 269

Query: 193 WKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L            ++  G+L++  C   +  E Y +L +V E  +V  NT     ++ 
Sbjct: 270 ARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVVMLNTVIRGCLA- 328

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
              +    R +EL   M ++   PD  TY  +++GLCK  +   A R+ ++++E+G  P+
Sbjct: 329 ---EGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPN 385

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y+T++H  C+ G   DAR M  +M  KG   N   YN +I+   +   L+EA RL +
Sbjct: 386 IVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQ 445

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM  +G      TYNT+I  LC + + DEA H+F  + ++G+  + ITYNTLI      G
Sbjct: 446 EMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSG 505

Query: 424 K 424
           +
Sbjct: 506 R 506



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 149/312 (47%), Gaps = 10/312 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           ARA ++  + + S G  P+ ++  + +  LC+ G    A     +++E G   +I T+++
Sbjct: 333 ARATEL-YEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYST 391

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            L    +    D    +   +   G+         +I A   DGK+ E   L++++   G
Sbjct: 392 LLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQG 451

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
             P+   +N +I   C          +   ++      +  TY  +I+ L  S +  E  
Sbjct: 452 CKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGL 511

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           R+ N++   G   D V Y  +I  LCK G +  +  +  EM+ KG+ PN ++YN +I+  
Sbjct: 512 RLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINEL 571

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   + +A  L KEML++G     VTYNTLI GLC  G T  A +L E++  + +  D+
Sbjct: 572 CKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDI 631

Query: 410 ITYNTLIQGYCK 421
           +TYN LI  +CK
Sbjct: 632 VTYNILISWHCK 643



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 138/302 (45%), Gaps = 13/302 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+  +    ++ LC +   +EA+    ++ E+ V       N+ + GC+   +    
Sbjct: 280 GCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNVV----MLNTVIRGCLAEGKLARA 335

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +LY  +   G          L+   C  G+      +L ++ E G  P    ++ L+  
Sbjct: 336 TELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHS 395

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           FC    +     +L  M A+  + ++  Y  +I  L K  K  EA R+  ++K +G  PD
Sbjct: 396 FCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPD 455

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y T+I+ LC    + +A  ++  ++ +G++ N  TYN++IH        +E  RL  
Sbjct: 456 ICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLAN 515

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM+  G     V+YN LI  LC  G  D +  L EEM  KGI  +  +YN LI   CK G
Sbjct: 516 EMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAG 575

Query: 424 KI 425
           K+
Sbjct: 576 KV 577



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 150/336 (44%), Gaps = 16/336 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYI---QCLCESGLIEE 156
           +G +P +V+   L   L   R    A   L   G  P  N + L      CL E G +  
Sbjct: 279 HGCTPSVVTYGFLLRGLCRTRQADEAYAML---GRVPEVNVVMLNTVIRGCLAE-GKLAR 334

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A   +  +   G    + T+N  + G  K+ R     ++  ++ E G          L+ 
Sbjct: 335 ATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLH 394

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           +FC +G   +   +L Q+   G    +  +N +I    +         L+  M ++   P
Sbjct: 395 SFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKP 454

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I  LC + +  EA  +F +L E G V + + Y T+IH L   G   +  ++ 
Sbjct: 455 DICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLA 514

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+  G   +  +YN +I   C+  N++ +  L +EM+ KG      +YN LI  LC  
Sbjct: 515 NEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKA 574

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+  +A  L +EM  +G+  D++TYNTLI G CK G
Sbjct: 575 GKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVG 610



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 145/296 (48%), Gaps = 18/296 (6%)

Query: 101 GFSPDLVSCNVLFDSLV------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G +P++V+ + L  S        +ARA    +D + + GFS N       I  L + G +
Sbjct: 381 GCAPNIVTYSTLLHSFCRNGMWDDARAM---LDQMSAKGFSMNSQGYNGIIYALGKDGKL 437

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           +EA     ++K  G    I T+N+ +      D+ D    ++ +L+E G          L
Sbjct: 438 DEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTL 497

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I A  + G+  EG  L  +++  G   +  ++N LI   C++ N  R   LL  M+ +  
Sbjct: 498 IHALLHSGRWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMMLLEEMMTKGI 557

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+NF+Y  +IN LCK+ K  +A  +  ++  +G  PD V Y T+I+GLCK+GW   A  
Sbjct: 558 KPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALN 617

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +  ++ ++ + P+  TYN +I  +C++  L++A  L  + +  G      T+  ++
Sbjct: 618 LLEKLPNENVHPDIVTYNILISWHCKVRLLDDASMLLDKAVSGGIVPNERTWGMMV 673



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 78/334 (23%), Positives = 149/334 (44%), Gaps = 12/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N+L   L +      A+  LD     G +PN  +    +   C +G+ ++A
Sbjct: 346 GCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDA 405

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++   G   + + +N  +    K  + D   +L  ++   G          +I  
Sbjct: 406 RAMLDQMSAKGFSMNSQGYNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYNTIIYH 465

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            CN+ ++ E   +   +LE+G+V     +N LI        +     L + MV      D
Sbjct: 466 LCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQEGLRLANEMVLHGCPLD 525

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +I  LCK      +  +  ++  +G  P+   Y  +I+ LCK G + DA ++  
Sbjct: 526 VVSYNGLIKALCKEGNVDRSMMLLEEMMTKGIKPNNFSYNMLINELCKAGKVRDALELSK 585

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+++GL P+  TYN++I+G C++     A  L +++ ++      VTYN LI+  C   
Sbjct: 586 EMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVR 645

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
             D+A  L ++    GI  +  T+  ++Q + ++
Sbjct: 646 LLDDASMLLDKAVSGGIVPNERTWGMMVQNFVRQ 679



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/336 (23%), Positives = 131/336 (38%), Gaps = 75/336 (22%)

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKV 215
           +   V  S +++N+ L    + D       LY  ++           G   +A C  G+ 
Sbjct: 137 RRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAARALCRLGRA 196

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            +   LLR +   G VP+   +  +I     +      + LL  M+    A D  T+ +V
Sbjct: 197 RDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCAADVNTFNDV 256

Query: 276 I-----------------------------------NGLCKSRKRLEAYRVFNDLKE--- 297
           +                                    GLC++R+  EAY +   + E   
Sbjct: 257 VLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAMLGRVPEVNV 316

Query: 298 ----------------------------RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
                                       +G  PD   Y  ++HGLCK+G  G A +M  E
Sbjct: 317 VMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDE 376

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  KG  PN  TY++++H +CR    ++A+ +  +M  KG+   +  YN +I  L   G+
Sbjct: 377 MEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMSAKGFSMNSQGYNGIIYALGKDGK 436

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEA  L +EM  +G   D+ TYNT+I   C   ++
Sbjct: 437 LDEAMRLVQEMKSQGCKPDICTYNTIIYHLCNNDQM 472



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 75/172 (43%), Gaps = 1/172 (0%)

Query: 251 GRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
           GR   LL  M  R     +F +Y  V++ L ++    +A  ++  +      P T  +  
Sbjct: 126 GRALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGV 185

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
               LC++G   DA  +   M   G +P+   Y ++IH       + EA  L  EML  G
Sbjct: 186 AARALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMG 245

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                 T+N ++ GLC  G   EA  L + M   G    V+TY  L++G C+
Sbjct: 246 CAADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCR 297



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 1/139 (0%)

Query: 288 AYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           A  + + +  R    P    Y  V+  L +     DA  ++  M+   + P  +T+    
Sbjct: 128 ALHLLDQMPRRFAVTPSFRSYNAVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVAA 187

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
              CR+    +A  L + M   G     V Y T+I  L   G   EA  L +EM   G  
Sbjct: 188 RALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLLMGCA 247

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DV T+N ++ G C  G +
Sbjct: 248 ADVNTFNDVVLGLCGLGHV 266


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCN----VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+ +CN    VL D  + ++A K     ++  G  P   +    +   C+ G +++
Sbjct: 175 GLLPDVKNCNRILRVLRDENLLSKA-KNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQ 233

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    S+++E G + +  T+N  + G  K    +    L  +++ SG          LI 
Sbjct: 234 ALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLIN 293

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G   E ++L+ +++     P  + +N L+   C+      V      M+     P
Sbjct: 294 GFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTP 353

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  ++  ++ G C++    EA+ +F++LK R  VP  + Y T+IHGLC  G+L  A ++ 
Sbjct: 354 DIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLK 413

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  +GL P+ +TY  +++G  ++  +  A+    EML KG       YNT I G    
Sbjct: 414 KEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKI 473

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             T  A+ + EEM   G   DVITYN  +   C++G
Sbjct: 474 ADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQG 509



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 152/332 (45%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSL---VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L + N L   L   V+    ++    +  + F+P+  S    +   C +G I EAF  
Sbjct: 318 PTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLL 377

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND-------- 212
           F +LK   +  ++ T+N+ + G       D   +L  ++ + G     F           
Sbjct: 378 FDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFK 437

Query: 213 -GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G VS       ++L  GL P+  A+N  I    +  +      +   M+A    PD  T
Sbjct: 438 LGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVIT 497

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   ++ LC+     EA  +  ++   G +PD V YT++I+G  K G L  AR+++ EM+
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG+ P+  TY  +IH +     L+ A     +ML+K      +TYN +I GLC+  R D
Sbjct: 558 SKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMD 617

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EAY  F+EM +KGI  +  +Y  LI   C  G
Sbjct: 618 EAYKYFDEMEEKGILPNKFSYTILINESCNMG 649



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 56/384 (14%)

Query: 72  DP-LFFREFLKQQNNVLLSIRFFQWLHSHYGFS-PDLVSCNVL----------------- 112
           DP LF R     +    +++RFF+W+ +   F   + V C +L                 
Sbjct: 84  DPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVME 143

Query: 113 ----------FDSLVEARAF-KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
                      D L+       +  D +   G  P+  +    ++ L +  L+ +A   +
Sbjct: 144 RVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVY 203

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
             +++ G+  ++ T+N+                          ++ ++C +G+V +  EL
Sbjct: 204 GMMEQFGIKPTVVTYNT--------------------------MLDSYCKEGRVDQALEL 237

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           L ++ E G  P +  +N L++   +K    +   L+  M+        +TY  +ING C+
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
               +EA+ +  ++  R   P    Y T+++GLCK   +   R  + +M+     P+  +
Sbjct: 298 KGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVS 357

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           +NS+++GYCR   + EA  L  E+  +    T +TYNTLI GLC+ G  D A  L +EM 
Sbjct: 358 FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMT 417

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
            +G+F D+ TY  L+ G  K G +
Sbjct: 418 DQGLFPDIFTYTILVNGCFKLGYV 441



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/348 (25%), Positives = 154/348 (44%), Gaps = 14/348 (4%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQ 146
           +RF   L S   F+PD+VS N L            A    D L      P   +    I 
Sbjct: 341 LRFSDMLKSK--FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIH 398

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLI 206
            LC  G ++ A     ++ + G+F  I T+   + GC K+    +    +++++  G   
Sbjct: 399 GLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKP 458

Query: 207 QAFCNDGKV---------SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
             F  + ++         S  + +  ++L  G  P+   +N  +   C++ NF    +LL
Sbjct: 459 DRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLL 518

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             MV+    PD+ TY  +ING  K+    +A  VFN++  +G  P  V YT +IH     
Sbjct: 519 ENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAK 578

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             L  A   + +M+ K +  N  TYN++I+G C    ++EA +   EM +KG      +Y
Sbjct: 579 QMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSY 638

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             LI   C  G  +EA  L+ EM  + I  D  T++  ++   ++ ++
Sbjct: 639 TILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 69/136 (50%)

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           VF+ +   G +PD      ++  L     L  A+ ++  M   G+ P   TYN+M+  YC
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +++A  L  EM ++G     VTYN L+ GL   G  ++A  L EEM   G+     
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 411 TYNTLIQGYCKEGKIV 426
           TYN LI G+C++G  V
Sbjct: 287 TYNPLINGFCQKGLFV 302


>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
 gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g01400, mitochondrial; Flags: Precursor
 gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
          Length = 466

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 163/365 (44%), Gaps = 32/365 (8%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA 125
           P      P   ++ +  Q++ LL+   F +      F     S  +L   L   R F + 
Sbjct: 44  PKSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLI 103

Query: 126 MDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
            D L     S  P + E++   I+   E+ L E+    F K+ E       K  N  L  
Sbjct: 104 DDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRIL-- 161

Query: 183 CIKIDRTDLVWKLYHDLIES--GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                          D++ S  GYL +AF          EL +     G++P   ++N L
Sbjct: 162 ---------------DVLVSHRGYLQKAF----------ELFKSSRLHGVMPNTRSYNLL 196

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           +  FC   +     +L   M+ R+  PD  +Y+ +I G C+  +   A  + +D+  +G+
Sbjct: 197 MQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGF 256

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           VPD + YTT+++ LC+   L +A K+   M  KG  P+   YN+MI G+CR D   +A++
Sbjct: 257 VPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARK 316

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  +ML  G    +V+Y TLI GLC  G  DE     EEM  KG        N L++G+C
Sbjct: 317 VLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFC 376

Query: 421 KEGKI 425
             GK+
Sbjct: 377 SFGKV 381



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 133/286 (46%), Gaps = 10/286 (3%)

Query: 134 FSPNPNSLELYIQCLCE-SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           F+P P  L   +  L    G +++AF  F   +  GV  + +++N  +      D   + 
Sbjct: 150 FTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIA 209

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           ++L+  ++E            LIQ FC  G+V+   ELL  +L  G VP+  ++  L++ 
Sbjct: 210 YQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNS 269

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C K       +LL  M  +   PD   Y  +I G C+  + ++A +V +D+   G  P+
Sbjct: 270 LCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPN 329

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           +V Y T+I GLC  G   + +K   EMI KG  P+    N ++ G+C    +EEA  + +
Sbjct: 330 SVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVE 389

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            ++  G    + T+  +I  +C    +++     E+  ++ I  D 
Sbjct: 390 VVMKNGETLHSDTWEMVIPLICNEDESEKIKLFLEDAVKEEITGDT 435



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 1/192 (0%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDL 295
           F  LI  + E K   +V    + M+  N  P       +++ L   R  L+ A+ +F   
Sbjct: 122 FTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSS 181

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +  G +P+T  Y  ++   C    L  A +++ +M+ + ++P+  +Y  +I G+CR   +
Sbjct: 182 RLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQV 241

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
             A  L  +ML+KG+    ++Y TL+  LC   +  EAY L   M  KG   D++ YNT+
Sbjct: 242 NGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTM 301

Query: 416 IQGYCKEGKIVN 427
           I G+C+E + ++
Sbjct: 302 ILGFCREDRAMD 313


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 138/295 (46%), Gaps = 9/295 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P     +     L E G++E A   F ++ +  V    ++ N+ L    K    DL    
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           + D++ +G          +I   C +G +     L  Q+ + GL P+   +N LI  + +
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    L   M      PD  TY  +IN  CK +  L A+  F ++K++   P+ + 
Sbjct: 180 IGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVIS 239

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T+I  LCK G +  A K + +M   GLLPNE+TY+S+I   C+  NL EA  L  EML
Sbjct: 240 YSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEML 299

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +      VTY TL+ GLC  G  +EA  LF  M + G+  ++  Y  LI G+ K
Sbjct: 300 QEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIK 354



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 171/375 (45%), Gaps = 23/375 (6%)

Query: 65  IPSFNFNDPLFF----REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
           +P F   D LF        L+      L +  F+ L       P   SCN     L +A 
Sbjct: 59  VPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVL-------PKARSCNAFLHRLSKAG 111

Query: 121 AFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
              ++ DF   +   G +P   +  + I  +C+ G +  A   F ++K+MG+   I T+N
Sbjct: 112 EGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYN 171

Query: 178 SALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLED 228
           + + G  KI   D    L+          D+I    LI +FC    +   +E  R++ + 
Sbjct: 172 TLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDK 231

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
            L P   +++ LI   C++       +    M      P+ FTY  +I+  CK+    EA
Sbjct: 232 DLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEA 291

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           + + +++ +     + V YTT++ GLC+ G + +A +++  M   G+ PN   Y ++IHG
Sbjct: 292 FMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHG 351

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           + ++ ++++A  L  EM +K      + + T++ GLC   + +E   +  EM + GI  +
Sbjct: 352 HIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGAN 411

Query: 409 VITYNTLIQGYCKEG 423
            + Y TL+  Y K G
Sbjct: 412 PVIYTTLMDAYFKAG 426



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 149/337 (44%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P + + N++   + +      A    +     G +P+  +    I    + GL++E+
Sbjct: 127 GIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDES 186

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQA 208
            C F ++K MG    + T+N+ +    K       ++ + ++         I    LI A
Sbjct: 187 VCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDA 246

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G +    +    +   GL+P    ++ LI   C+  N G    L   M+  +   +
Sbjct: 247 LCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLN 306

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++GLC+     EA  +F  + + G  P+   YT +IHG  K+  +  A +++ 
Sbjct: 307 IVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFN 366

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K + P+   + +++ G C    LEE K +  EM + G G   V Y TL+      G
Sbjct: 367 EMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAG 426

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA +L EEM   G    V+T+  LI G CK G +
Sbjct: 427 NRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLV 463



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 140/324 (43%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L +S  + +    A +F   +      PN  S    I  LC+ G+++ A
Sbjct: 197 GCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMA 256

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F  +  +G+  +  T++S                          LI A C  G + E
Sbjct: 257 IKFFVDMTRVGLLPNEFTYSS--------------------------LIDANCKAGNLGE 290

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            + L  ++L++ +      +  L+   CE+       EL   M      P+   Y  +I+
Sbjct: 291 AFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIH 350

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K R   +A  +FN+++E+   PD +++ T++ GLC    L + + +  EM   G+  
Sbjct: 351 GHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGA 410

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N   Y +++  Y +  N  EA  L +EM D G   T VT+  LI GLC  G   EA + F
Sbjct: 411 NPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYF 470

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
             M    +  +V  Y  LI G CK
Sbjct: 471 GRMPDHDLQPNVAVYTALIDGLCK 494



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 89/359 (24%), Positives = 167/359 (46%), Gaps = 15/359 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFS 135
           L ++  + ++I+FF  + +  G  P+  + + L D+  +A     AF +A + L      
Sbjct: 247 LCKEGMMQMAIKFFVDM-TRVGLLPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEH-VD 304

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
            N  +    +  LCE G++ EA   F  + + GV  +++ + + + G IK+   D   +L
Sbjct: 305 LNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMEL 364

Query: 196 YHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           ++++ E          G ++   C++ K+ E   ++ ++ E G+      +  L+  + +
Sbjct: 365 FNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFK 424

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
             N      LL  M          T+  +I+GLCK     EA   F  + +    P+  +
Sbjct: 425 AGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAV 484

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YT +I GLCK   +GDA+K++ EM  K ++P++  Y +MI G  +  N +EA  +  +M+
Sbjct: 485 YTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNLKHGNFQEALNMRNKMM 544

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + G       Y +L+ GL   G+  +A     EM  KGI  D      L++ + + G I
Sbjct: 545 EMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDETLCTRLLRKHYELGNI 603



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 96/196 (48%)

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           ++P+  + N  + R  +        +    MV    AP  FTY  +I  +CK    L A 
Sbjct: 93  VLPKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTAR 152

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            +F  +K+ G  PD V Y T+I G  K+G L ++  ++ EM   G  P+  TYN++I+ +
Sbjct: 153 SLFEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSF 212

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   +  A    +EM DK      ++Y+TLI  LC  G    A   F +M + G+  + 
Sbjct: 213 CKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNE 272

Query: 410 ITYNTLIQGYCKEGKI 425
            TY++LI   CK G +
Sbjct: 273 FTYSSLIDANCKAGNL 288



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/281 (23%), Positives = 117/281 (41%), Gaps = 12/281 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+L +   L    ++ R+   AM+  +        P+       +  LC    +EE 
Sbjct: 337 GVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEEC 396

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +++KE G+  +   + + +    K         L  ++ + G          LI  
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDG 456

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G V E      ++ +  L P    +  LI   C+    G   +L   M  +N  PD
Sbjct: 457 LCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPD 516

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+G  K     EA  + N + E G   D   YT+++ GL + G +  ARK   
Sbjct: 517 KIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLA 576

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           EMI KG++P+E     ++  +  + N++EA  L  E+++KG
Sbjct: 577 EMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKG 617



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/225 (18%), Positives = 100/225 (44%), Gaps = 13/225 (5%)

Query: 123 KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           K+ M  +  +G   NP      +    ++G   EA     +++++G   ++ T+ + + G
Sbjct: 397 KIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDG 456

Query: 183 CIKIDRTDLVWKLY-------HDLIES----GYLIQAFCNDGKVSEGYELLRQVLEDGLV 231
             K  R  +   +Y       HDL  +      LI   C +  + +  +L  ++ +  ++
Sbjct: 457 LCK--RGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMI 514

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+  A+  +I    +  NF     + + M+      D + Y  ++ GL +  +  +A + 
Sbjct: 515 PDKIAYTAMIDGNLKHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKF 574

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
             ++  +G +PD  + T ++    ++G + +A ++  E++ KGL+
Sbjct: 575 LAEMIGKGIIPDETLCTRLLRKHYELGNIDEAIELQNELVEKGLI 619


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 161/353 (45%), Gaps = 32/353 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           GF PD  + + +   L EA   KV   FL      S G +P+  +  + I   C++GLIE
Sbjct: 283 GFVPDTSTYSKVITFLCEA--MKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIE 340

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A   F +++ +G   ++ T+ + L   +K  +      +++ +I++G          L+
Sbjct: 341 QARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALV 400

Query: 207 QAFCNDGKVSEGYELLRQVL----------------EDGLVPENTAFNKLISRFCEKKNF 250
              C  G++ +  E+  +++                 D + P    +  LI   C+    
Sbjct: 401 DGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKV 460

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               ELL  M++    P++  Y+ +I+G CK  K   A  VF  + + GY+P    YT++
Sbjct: 461 VDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSL 520

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I  + K   L  A K+  +M+     PN  TY +MI G CRI   ++A +L   M +KG 
Sbjct: 521 IDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGC 580

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               VTY  LI GL   G+ D +  LF +M+ KG   + +TY  LI   C  G
Sbjct: 581 SPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAG 633



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 163/376 (43%), Gaps = 33/376 (8%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---S 131
           F  E +K +   LL    FQ + S  G +PD+ +  +L DS  +A   + A  + D   S
Sbjct: 297 FLCEAMKVEKAFLL----FQEMKS-VGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRS 351

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G S N  +    +    ++  + +A   F+++ + G   +  T+++ + G  K      
Sbjct: 352 IGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQK 411

Query: 192 VWKLYHDLIES-------------------------GYLIQAFCNDGKVSEGYELLRQVL 226
             ++Y  LI +                         G LI   C   KV +  ELL  +L
Sbjct: 412 ACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAML 471

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
            +G  P +  ++ LI  FC+        E+   M      P   TY  +I+ + K R+  
Sbjct: 472 SNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLD 531

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
            A +V + + E    P+ V YT +I GLC++G    A K+   M  KG  PN  TY ++I
Sbjct: 532 LAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALI 591

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G  +   ++ + +L  +M  KG     VTY  LI   C  G  DEA+ L  EM Q    
Sbjct: 592 DGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWP 651

Query: 407 RDVITYNTLIQGYCKE 422
           + +  Y +++QG+ K+
Sbjct: 652 KYLQGYCSVVQGFSKK 667



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/358 (22%), Positives = 158/358 (44%), Gaps = 34/358 (9%)

Query: 104 PDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L    ++ +     K  ++ +   G +PNP+     +   C +     A+  
Sbjct: 140 PNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSLVHSYCNARDYPYAYKL 199

Query: 161 FSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVW---KLYHDLIESGYLI-------- 206
             ++ + G       +N    ++ G  ++   DL+    K+Y +++ S  ++        
Sbjct: 200 LKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANF 259

Query: 207 -QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
            +  C  GK    +++++ ++  G VP+ + ++K+I+  CE     +   L   M +   
Sbjct: 260 ARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGV 319

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD +TY  +I+  CK+    +A   F++++  G   + V YT ++H   K   L  A  
Sbjct: 320 NPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASD 379

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG---------------- 369
           ++  MI  G  PN  TY++++ G C+   +++A  ++ +++                   
Sbjct: 380 IFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDS 439

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
                VTY  LI GLC   +  +A  L + M   G   + I Y+ LI G+CK GKI N
Sbjct: 440 IAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDN 497



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 155/350 (44%), Gaps = 22/350 (6%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           +F+  H+    +P++V+   L D L +A     A + LD   S G  PN    +  I   
Sbjct: 431 YFEGKHTD-SIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGF 489

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C+ G I+ A   F ++ + G   ++ T+ S +    K  R DL  K+   ++ES      
Sbjct: 490 CKVGKIDNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNV 549

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +I   C  G+  +  +LL  + E G  P    +  LI    +        +L   
Sbjct: 550 VTYTAMIDGLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQ 609

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK--M 317
           M  +  AP+  TY  +IN  C +    EA+ + +++K+  +      Y +V+ G  K  +
Sbjct: 610 MSTKGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFI 669

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT- 376
             LG    +  E+   G +P    Y  +I  + +   LEEA  LHKEM++        + 
Sbjct: 670 ASLG----LLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSK 725

Query: 377 --YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             Y +LI  LCL  + ++A+ L+ E+ +KG+  ++  +  LI+G  K  K
Sbjct: 726 DMYTSLIQALCLASQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNK 775



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 140/336 (41%), Gaps = 40/336 (11%)

Query: 100 YGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G+ P   + N L   L  A      F+V  +  +S GF  +  ++  + Q LC+ G   
Sbjct: 34  FGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSES-GFCMDKFTVGCFAQALCKEG--- 89

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV 215
                               W+ AL   + I+R D  +KL  D +    +I         
Sbjct: 90  -------------------RWSDAL---VMIERED--FKL--DTVLCTQMISGLMEASLF 123

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E    L ++  +  +P    +  L++ F +KK  G    +++ M+     P+   +  +
Sbjct: 124 DEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPNPSLFNSL 183

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC------KMGWLGDARKMWFE 329
           ++  C +R    AY++   + + G  P  V Y   I  +C          L  A K++ E
Sbjct: 184 VHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSICGGEELPSPDLLALAEKVYEE 243

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+    + N+    +     C +   + A ++ K M+ KG+   T TY+ +I  LC   +
Sbjct: 244 MLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMK 303

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++A+ LF+EM   G+  DV TY  LI  +CK G I
Sbjct: 304 VEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLI 339



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 66/292 (22%), Positives = 123/292 (42%), Gaps = 27/292 (9%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154
           S  G+ P + +   L D++ + R   +AM  L     +  +PN  +    I  LC  G  
Sbjct: 506 SKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGEC 565

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           ++A    S ++E G   ++ T+ + + G  K  + DL  +L+  +   G          L
Sbjct: 566 QKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVL 625

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE-----KKNFGRVSELLHTM 260
           I   C  G + E + LL ++       + T + K +  +C       K F     LL  +
Sbjct: 626 INHCCAAGLLDEAHSLLSEM-------KQTYWPKYLQGYCSVVQGFSKKFIASLGLLEEL 678

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY---VPDTVMYTTVIHGLCKM 317
            +    P    Y  +I+   K+ +  EA  +  ++ E      +    MYT++I  LC  
Sbjct: 679 ESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLA 738

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
             L  A +++ E+  KG++P    +  +I G  +++   EA +L   + D+G
Sbjct: 739 SQLEKAFELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEG 790



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           E+ D GY  +  TYN L+  L   G+ D  + + +EM++ G   D  T     Q  CKEG
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 424 K 424
           +
Sbjct: 90  R 90



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 55/132 (41%), Gaps = 3/132 (2%)

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           +LK+ GY P    Y  ++  L   G +    ++  EM   G   +++T        C+  
Sbjct: 30  ELKDFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEG 89

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
              +A  + +    + +   TV    +I+GL      DEA      M       +V+TY 
Sbjct: 90  RWSDALVMIER---EDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYR 146

Query: 414 TLIQGYCKEGKI 425
           TL+ G+ K+ ++
Sbjct: 147 TLLTGFLKKKQL 158


>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
          Length = 913

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 165/341 (48%), Gaps = 35/341 (10%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           ++  FQ +H  +G  P + S N L ++L+E+  +  A  F    ++ G SPN  +  + I
Sbjct: 72  ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILI 131

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW--KLYHDLIESG 203
           +  C           F K KE+                      + +W      D+   G
Sbjct: 132 KISCRKK-------QFDKAKEL---------------------LNWMWGQGFSPDVFSYG 163

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV-A 262
            LI +   +G +S+  +L  ++ E G+ P+   +N LI  F +K +    SE+   ++  
Sbjct: 164 TLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKG 223

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
            +  P+  +Y  +INGLCK  K  E++ +++ +K+     D   Y+T+IHGLC  G L  
Sbjct: 224 PSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDG 283

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM   G+ P+   YN+M++GY R   +EE   L K M  +G   T V+YN LI 
Sbjct: 284 ATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEG-CRTVVSYNILIR 342

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           GL  + + DEA  ++E + +K    D +TY  L+ G CK G
Sbjct: 343 GLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNG 383



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/223 (34%), Positives = 118/223 (52%), Gaps = 3/223 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+ A     K  E           GL P    +N LI   C KK F +  ELL+ M  + 
Sbjct: 95  LLNALIESNKWDEAESFFLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQG 154

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
            +PD F+Y  +IN L K+    +A ++F+++ ERG  PD   Y  +I G  K G + +A 
Sbjct: 155 FSPDVFSYGTLINSLAKNGYMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILNAS 214

Query: 325 KMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           ++W E + KG  + PN  +YN MI+G C+    +E+  +   M     G+   TY+TLI 
Sbjct: 215 EIW-ERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIH 273

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GLC  G  D A  +++EMA+ G+  DV+ YNT++ GY + G+I
Sbjct: 274 GLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRI 316



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/379 (24%), Positives = 169/379 (44%), Gaps = 16/379 (4%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           E+ +  D+  +N     FF+     + ++L +   ++ L       P++ S NV+ + L 
Sbjct: 187 ERGVTPDVACYNILIDGFFK-----KGDILNASEIWERLLKGPSVYPNIPSYNVMINGLC 241

Query: 118 EARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +   F  + +       +     L  Y   I  LC SG ++ A   + ++ E GV   + 
Sbjct: 242 KCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVV 301

Query: 175 TWNSALLGCIKIDRTDL---VWKLYHD-----LIESGYLIQAFCNDGKVSEGYELLRQVL 226
            +N+ L G ++  R +    +WK+        ++    LI+    + KV E   +   + 
Sbjct: 302 VYNTMLNGYLRAGRIEECLELWKVMEKEGCRTVVSYNILIRGLFENAKVDEAISIWELLP 361

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E     ++  +  L+   C+     +   +L          D F Y  +INGLC+  +  
Sbjct: 362 EKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRLD 421

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           E   V + + + G  P+  +   VI+G  +   L DA + +  M+ KG  P   TYN++I
Sbjct: 422 EVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVTYNTLI 481

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           +G  + +   EA  L KEML KG+    +TY+ L+ GLC   + D A +L+ +  +KG  
Sbjct: 482 NGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQALEKGFK 541

Query: 407 RDVITYNTLIQGYCKEGKI 425
            DV  +N +I G C  GK+
Sbjct: 542 PDVKMHNIIIHGLCSSGKV 560



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/328 (24%), Positives = 151/328 (46%), Gaps = 16/328 (4%)

Query: 106 LVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
           +VS N+L   L E      A+   + L       +  +  + +  LC++G + +A     
Sbjct: 334 VVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILE 393

Query: 163 KLKEMGVFGSIKT--WNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
           +  E G  G + T  ++S + G  +  R D V  +   + + G          +I  F  
Sbjct: 394 E-AENGR-GDLDTFAYSSMINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVR 451

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K+ +       ++  G  P    +N LI+   + + F     L+  M+ +   P+  T
Sbjct: 452 ASKLEDALRFFGNMVSKGCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMIT 511

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++NGLC+ +K   A  ++    E+G+ PD  M+  +IHGLC  G + DA +++ EM 
Sbjct: 512 YSLLMNGLCQGKKLDMALNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMK 571

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +  +PN  T+N+++ G+ ++ + E A ++   +L  G     ++YN  + GLC   R  
Sbjct: 572 QRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRIS 631

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           +A     +   +G+    IT+N L+QGY
Sbjct: 632 DAVGFLNDAVDRGVLPTAITWNILVQGY 659



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 153/338 (45%), Gaps = 32/338 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
           FF +  +  G SP+L + N+L       + F  A + L+     GFSP+  S    I  L
Sbjct: 111 FFLYFET-MGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSL 169

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQA 208
            ++G + +A   F ++ E GV   +  +N                           LI  
Sbjct: 170 AKNGYMSDALKLFDEMPERGVTPDVACYN--------------------------ILIDG 203

Query: 209 FCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           F   G +    E+  ++L+   V P   ++N +I+  C+   F    E+ H M    R  
Sbjct: 204 FFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQ 263

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D +TY  +I+GLC S     A RV+ ++ E G  PD V+Y T+++G  + G + +  ++W
Sbjct: 264 DLYTYSTLIHGLCGSGNLDGATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELW 323

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  +G      +YN +I G      ++EA  + + + +K     ++TY  L+ GLC +
Sbjct: 324 KVMEKEG-CRTVVSYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKN 382

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  ++A  + EE        D   Y+++I G C+EG++
Sbjct: 383 GYLNKALSILEEAENGRGDLDTFAYSSMINGLCREGRL 420



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 152/337 (45%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V  N + +  + A   +  ++    ++  G      S  + I+ L E+  ++EA
Sbjct: 295 GVSPDVVVYNTMLNGYLRAGRIEECLELWKVMEKEGCR-TVVSYNILIRGLFENAKVDEA 353

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
              +  L E        T+   + G  K    +    +           D      +I  
Sbjct: 354 ISIWELLPEKDCCADSMTYGVLVHGLCKNGYLNKALSILEEAENGRGDLDTFAYSSMING 413

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G++ E   +L Q+ + G  P     N +I+ F               MV++   P 
Sbjct: 414 LCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPT 473

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +INGL K+ +  EAY +  ++ ++G+ P+ + Y+ +++GLC+   L  A  +W 
Sbjct: 474 VVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWC 533

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           + + KG  P+   +N +IHG C    +E+A +L+ EM  +      VT+NTL+ G     
Sbjct: 534 QALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVR 593

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             + A  +++ + Q G+  D+I+YN  ++G C   +I
Sbjct: 594 DFERASKIWDHILQYGLQPDIISYNITLKGLCSCHRI 630



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/251 (24%), Positives = 106/251 (42%), Gaps = 11/251 (4%)

Query: 118 EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           E R  +VA  +D +   G  PNP      I     +  +E+A   F  +   G F ++ T
Sbjct: 417 EGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVVT 476

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVL 226
           +N+ + G  K +R    + L  ++++ G+         L+   C   K+     L  Q L
Sbjct: 477 YNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQAL 536

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           E G  P+    N +I   C         +L   M  RN  P+  T+  ++ G  K R   
Sbjct: 537 EKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFE 596

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
            A ++++ + + G  PD + Y   + GLC    + DA     + + +G+LP   T+N ++
Sbjct: 597 RASKIWDHILQYGLQPDIISYNITLKGLCSCHRISDAVGFLNDAVDRGVLPTAITWNILV 656

Query: 347 HGYCRIDNLEE 357
            GY  +    E
Sbjct: 657 QGYLALKGYME 667



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 1/159 (0%)

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           F  + V +   K+    +A  +F  + E  G  P    Y ++++ L +     +A   + 
Sbjct: 54  FDPKLVAHAYAKNSMPDQALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAESFFL 113

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
                GL PN  TYN +I   CR    ++AK L   M  +G+     +Y TLI  L  +G
Sbjct: 114 YFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNG 173

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              +A  LF+EM ++G+  DV  YN LI G+ K+G I+N
Sbjct: 174 YMSDALKLFDEMPERGVTPDVACYNILIDGFFKKGDILN 212


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 158/336 (47%), Gaps = 14/336 (4%)

Query: 101 GFSPDLVSCN----VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  PD+ +CN    VL D  + ++A K     ++  G  P   +    +   C+ G +++
Sbjct: 175 GLLPDVKNCNRILRVLRDENLLSKA-KNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQ 233

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A    S+++E G + +  T+N  + G  K    +    L  +++ SG          LI 
Sbjct: 234 ALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLIN 293

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G   E ++L+ +++     P  + +N L+   C+      V      M+     P
Sbjct: 294 GFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTP 353

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  ++  ++ G C++    EA+ +F++LK R  VP  + Y T+IHGLC  G+L  A ++ 
Sbjct: 354 DIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLK 413

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM  +GL P+ +TY  +++G  ++  +  A+    EML KG       YNT I G    
Sbjct: 414 KEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKI 473

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             T  A+ + EEM   G   DVITYN  +   C++G
Sbjct: 474 ADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQG 509



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 152/332 (45%), Gaps = 12/332 (3%)

Query: 104 PDLVSCNVLFDSL---VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L + N L   L   V+    ++    +  + F+P+  S    +   C +G I EAF  
Sbjct: 318 PTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCISEAFLL 377

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND-------- 212
           F +LK   +  ++ T+N+ + G       D   +L  ++ + G     F           
Sbjct: 378 FDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFK 437

Query: 213 -GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G VS       ++L  GL P+  A+N  I    +  +      +   M+A    PD  T
Sbjct: 438 LGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVIT 497

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   ++ LC+     EA  +  ++   G +PD V YT++I+G  K G L  AR+++ EM+
Sbjct: 498 YNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEML 557

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG+ P+  TY  +IH +     L+ A     +ML+K      +TYN +I GLC+  R D
Sbjct: 558 SKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMD 617

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EAY  F+EM +KGI  +  +Y  LI   C  G
Sbjct: 618 EAYKYFDEMEEKGILPNKFSYTILINESCNMG 649



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 56/384 (14%)

Query: 72  DP-LFFREFLKQQNNVLLSIRFFQWLHSHYGFS-PDLVSCNVL----------------- 112
           DP LF R     +    +++RFF+W+ +   F   + V C +L                 
Sbjct: 84  DPHLFIRVLHSMRIRPRVALRFFRWVMAQPDFKESEFVFCAILDILVGNDLMHAAYWVME 143

Query: 113 ----------FDSLVEARAF-KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
                      D L+       +  D +   G  P+  +    ++ L +  L+ +A   +
Sbjct: 144 RVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVY 203

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
             +++ G+  ++ T+N+                          ++ ++C +G+V +  EL
Sbjct: 204 GMMEQFGIKPTVVTYNT--------------------------MLDSYCKEGRVDQALEL 237

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           L ++ E G  P +  +N L++   +K    +   L+  M+        +TY  +ING C+
Sbjct: 238 LSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQ 297

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
               +EA+ +  ++  R   P    Y T+++GLCK   +   R  + +M+     P+  +
Sbjct: 298 KGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVS 357

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           +NS+++GYCR   + EA  L  E+  +    T +TYNTLI GLC+ G  D A  L +EM 
Sbjct: 358 FNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMT 417

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
            +G+F D+ TY  L+ G  K G +
Sbjct: 418 DQGLFPDIFTYTILVNGCFKLGYV 441



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 155/350 (44%), Gaps = 14/350 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELY 144
           + +RF   L S   F+PD+VS N L            A    D L      P   +    
Sbjct: 339 VRLRFSDMLKSK--FTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTL 396

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LC  G ++ A     ++ + G+F  I T+   + GC K+    +    +++++  G 
Sbjct: 397 IHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGL 456

Query: 205 LIQAFCNDGKV---------SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
               F  + ++         S  + +  ++L  G  P+   +N  +   C++ NF    +
Sbjct: 457 KPDRFAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACD 516

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           LL  MV+    PD+ TY  +ING  K+    +A  VFN++  +G  P  V YT +IH   
Sbjct: 517 LLENMVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHA 576

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               L  A   + +M+ K +  N  TYN++I+G C    ++EA +   EM +KG      
Sbjct: 577 AKQMLDLAFMYFSKMLEKSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKF 636

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +Y  LI   C  G  +EA  L+ EM  + I  D  T++  ++   ++ ++
Sbjct: 637 SYTILINESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 69/136 (50%)

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           VF+ +   G +PD      ++  L     L  A+ ++  M   G+ P   TYN+M+  YC
Sbjct: 167 VFDKMIRNGLLPDVKNCNRILRVLRDENLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYC 226

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +++A  L  EM ++G     VTYN L+ GL   G  ++A  L EEM   G+     
Sbjct: 227 KEGRVDQALELLSEMQERGCYPNDVTYNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAY 286

Query: 411 TYNTLIQGYCKEGKIV 426
           TYN LI G+C++G  V
Sbjct: 287 TYNPLINGFCQKGLFV 302


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++  M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKLMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 151/328 (46%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|147821100|emb|CAN70963.1| hypothetical protein VITISV_038268 [Vitis vinifera]
          Length = 844

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 168/340 (49%), Gaps = 19/340 (5%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST----GFSPNPNSLEL 143
           L+IR F  + S +G  P + S N L ++LV+ + F +      +     G  PN  +  +
Sbjct: 188 LAIRTFLRIPS-FGLQPSVRSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVFTCNI 246

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW--KLYHDLIE 201
            ++ LC+   I+ A     ++  MG   ++ T+ + L G   + + D+V   +++ ++++
Sbjct: 247 LVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGG--YVSKGDMVGARRVFGEILD 304

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G+         L+  +C  G+  +  +++ ++ E+ + P +  +  +I  +C++K  G 
Sbjct: 305 RGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKSGE 364

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           V  LL  M+ +   P +     VI+ LC+  K   A  ++  L ++   PD  + +T+IH
Sbjct: 365 VLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTLIH 424

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            LCK G + +ARK+ F+   KG +P+  TYN++I G C    L EA RL   M++KG   
Sbjct: 425 WLCKEGKVWEARKL-FDEFEKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGCVP 483

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              TYN LI G C  G   E   + EEM   G   +  TY
Sbjct: 484 NAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATY 523



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 160/342 (46%), Gaps = 21/342 (6%)

Query: 54  KPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRF------FQWLHSHYGFSPDLV 107
           +P+        IPSF     +  R F    N ++ + RF      F+     +G  P++ 
Sbjct: 185 RPKLAIRTFLRIPSFGLQPSV--RSFNTLLNTLVQNKRFDLVHLMFKNCRKKFGIVPNVF 242

Query: 108 SCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           +CN+L  +L +      A+  L+   + GF PN  +    +      G +  A   F ++
Sbjct: 243 TCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTYTTILGGYVSKGDMVGARRVFGEI 302

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKV 215
            + G      T+   + G  K  R     K+  ++ E+         G +I+A+C + K 
Sbjct: 303 LDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEENRVEPNDVTYGVIIEAYCKEKKS 362

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E   LL  +LE   +P +    ++I   CE+       EL   ++ +N  PDN     +
Sbjct: 363 GEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEVACELWKKLLKKNCTPDNAITSTL 422

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+ LCK  K  EA ++F++  E+G +P T+ Y  +I G+C+ G L +A ++W  M+ KG 
Sbjct: 423 IHWLCKEGKVWEARKLFDEF-EKGSIPSTLTYNALIAGMCEGGELPEAARLWDNMVEKGC 481

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           +PN +TYN +I G+C++ N  E  R+ +EMLD G      TY
Sbjct: 482 VPNAFTYNMLIKGFCKVGNAREGIRVMEEMLDNGCLPNKATY 523



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/401 (22%), Positives = 173/401 (43%), Gaps = 50/401 (12%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD 130
            P      + +Q N+ L+++ F      H  F+ +  +   + + L +ARAF+     + 
Sbjct: 100 SPKRVVSMISRQQNLDLALQIFDHAGKFHRNFAHNYETYLAMIEKLSKARAFEPMETLIS 159

Query: 131 STGFSPNPNSLELYIQCLCESGLIEE---AFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
               S       L+I  +   G       A   F ++   G+  S++++N+ L   ++  
Sbjct: 160 QLHKSQIKCGENLFITVIRNYGFAGRPKLAIRTFLRIPSFGLQPSVRSFNTLLNTLVQNK 219

Query: 188 RTDLVWKLYHD----------LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           R DLV  ++ +          +     L++A C    +     +L ++   G +P    +
Sbjct: 220 RFDLVHLMFKNCRKKFGIVPNVFTCNILVKALCKKNDIDAAIRVLEEMPAMGFIPNVVTY 279

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV------ 291
             ++  +  K +      +   ++ R   PD  TY  +++G CK  + ++A +V      
Sbjct: 280 TTILGGYVSKGDMVGARRVFGEILDRGWVPDPTTYTILMDGYCKKGRFMDAVKVMDEMEE 339

Query: 292 -----------------------------FNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
                                         +D+ E+ Y+P + +   VI  LC+ G +  
Sbjct: 340 NRVEPNDVTYGVIIEAYCKEKKSGEVLNLLDDMLEKKYIPSSALCCRVIDMLCEEGKVEV 399

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++W +++ K   P+    +++IH  C+   + EA++L  E  +KG   +T+TYN LIA
Sbjct: 400 ACELWKKLLKKNCTPDNAITSTLIHWLCKEGKVWEARKLFDE-FEKGSIPSTLTYNALIA 458

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G+C  G   EA  L++ M +KG   +  TYN LI+G+CK G
Sbjct: 459 GMCEGGELPEAARLWDNMVEKGCVPNAFTYNMLIKGFCKVG 499


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 146/309 (47%), Gaps = 9/309 (2%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D +   G +P+  +  + +  +C+ G +++A      L   G   +  ++N  L G   
Sbjct: 4   LDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLFT 63

Query: 186 IDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
            +R +   KL  ++   G          LI   C  G V    E+L Q+ + G  P + +
Sbjct: 64  AERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLS 123

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N L+  FC++K   +    +  MV+R   PD  +Y  ++  LC++ +   A  + + LK
Sbjct: 124 YNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQLK 183

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +G  P  + Y TVI GL K G   +A ++  EMI KGL P+  TY ++  G CR D +E
Sbjct: 184 GKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCREDKIE 243

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA R   ++ D G   T V YN ++ GLC    T  A  LF  M   G   +  TY  L+
Sbjct: 244 EAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILV 303

Query: 417 QGYCKEGKI 425
           +G   EG +
Sbjct: 304 EGLAYEGLV 312



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 143/328 (43%), Gaps = 30/328 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNP 138
           Q+  V  ++ F + L S YG  P+ VS N++   L  A  ++ A   M+ +   G  PN 
Sbjct: 28  QEGRVDDAMEFLENLPS-YGGEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 86

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I  LC  GL+E A     ++ + G   +  ++N                     
Sbjct: 87  VTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNP-------------------- 126

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+ AFC   K+ +    +  ++  G  P+  ++N L++  C         +LLH
Sbjct: 127 ------LLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLH 180

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            +  +  +P   +Y  VI+GL K+ K  EA  + +++  +G  PD + YTT+  GLC+  
Sbjct: 181 QLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIASGLCRED 240

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +A + + ++   G+ P    YN+++ G C+      A  L   M+  G      TY 
Sbjct: 241 KIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYT 300

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            L+ GL   G   EA  L  ++  +G+ 
Sbjct: 301 ILVEGLAYEGLVKEARDLLGQLCSRGVV 328



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 54/205 (26%), Positives = 106/205 (51%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           +LL ++ + G  P+   +N +++  C++       E L  + +    P+  +Y  V+ GL
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
             + +  +A ++  ++  +G  P+ V +  +I  LC+ G +  A ++  ++   G  PN 
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            +YN ++H +C+   +++A    + M+ +G     V+YNTL+  LC +G  D A  L  +
Sbjct: 122 LSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQ 181

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGK 424
           +  KG    +I+YNT+I G  K GK
Sbjct: 182 LKGKGCSPVLISYNTVIDGLTKAGK 206



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 89/171 (52%)

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           +LL  M  +  APD  TY  V+NG+C+  +  +A     +L   G  P+TV Y  V+ GL
Sbjct: 2   KLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGL 61

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
                  DA K+  EM HKG  PN  T+N +I   CR   +E A  + +++   G    +
Sbjct: 62  FTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNS 121

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           ++YN L+   C   + D+A    E M  +G + D+++YNTL+   C+ G++
Sbjct: 122 LSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEV 172


>gi|356564530|ref|XP_003550506.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g11690-like [Glycine max]
          Length = 556

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 151/314 (48%), Gaps = 10/314 (3%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
            R F++ +  L+  G SPN       I   C++G +  A   F K+  +G+  +  T++ 
Sbjct: 175 VRVFRL-LAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLFCKMDRLGLVPNQHTYSV 233

Query: 179 ALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  K       +++Y ++  SG          LI  +CNDG V + +++  ++ E G
Sbjct: 234 LMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKG 293

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
           +      +N LI   C  K FG   +L+H +     +P+  TY  +ING C   K   A 
Sbjct: 294 IACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAV 353

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           R+FN LK  G  P  V Y T+I G  K+  L  A  +  EM  + +  ++ TY  +I  +
Sbjct: 354 RLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAF 413

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
            R++  ++A  +H  M   G      TY+ LI G C++G   EA   F+ + +  +  + 
Sbjct: 414 ARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNS 473

Query: 410 ITYNTLIQGYCKEG 423
           + YNT+I GYCKEG
Sbjct: 474 VIYNTMIHGYCKEG 487



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/298 (28%), Positives = 141/298 (47%), Gaps = 9/298 (3%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  S  + I   CE+G     F   + L+E G+  ++  + + + GC K     L   L+
Sbjct: 157 NAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAKNLF 216

Query: 197 HDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
             +   G          L+  F   G   EG+++   +   G+VP   A+N LIS +C  
Sbjct: 217 CKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNCLISEYCND 276

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
               +  ++   M  +  A    TY  +I GLC+ +K  EA ++ + + + G  P+ V Y
Sbjct: 277 GMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTY 336

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             +I+G C +G +  A +++ ++   GL P   TYN++I GY +++NL  A  L KEM +
Sbjct: 337 NILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEE 396

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +    + VTY  LI        TD+A  +   M + G+  DV TY+ LI G C  G +
Sbjct: 397 RCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNM 454



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 135/293 (46%), Gaps = 9/293 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           ++ +G  PN  +    I   C  G++++AF  F++++E G+   + T+N  + G  +  +
Sbjct: 254 MNRSGIVPNAYAYNCLISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKK 313

Query: 189 TDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                KL H         +++    LI  FC+ GK+     L  Q+   GL P    +N 
Sbjct: 314 FGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTAVRLFNQLKSSGLSPTLVTYNT 373

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI+ + + +N     +L+  M  R  A    TY  +I+   +     +A  + + +++ G
Sbjct: 374 LIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDAFARLNYTDKACEMHSLMEKSG 433

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            VPD   Y+ +IHG C  G + +A K +  +    L PN   YN+MIHGYC+  +   A 
Sbjct: 434 LVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPNSVIYNTMIHGYCKEGSSYRAL 493

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
           RL  EM+  G      ++ + +  LC   +  EA  L  +M   G+   V  Y
Sbjct: 494 RLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLGQMINSGLKPSVSLY 546



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 106/201 (52%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           VL+  +V    +F  +I+  CE   F RV  LL  +     +P+   Y  +I+G CK+  
Sbjct: 149 VLKSKVVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGD 208

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            + A  +F  +   G VP+   Y+ +++G  K G   +  +M+  M   G++PN Y YN 
Sbjct: 209 VMLAKNLFCKMDRLGLVPNQHTYSVLMNGFFKQGLQREGFQMYENMNRSGIVPNAYAYNC 268

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I  YC    +++A ++  EM +KG     +TYN LI GLC   +  EA  L  ++ + G
Sbjct: 269 LISEYCNDGMVDKAFKVFAEMREKGIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVG 328

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  +++TYN LI G+C  GK+
Sbjct: 329 LSPNIVTYNILINGFCDVGKM 349



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/257 (21%), Positives = 104/257 (40%), Gaps = 47/257 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +  +++ N+L   L   + F  A+  +   +  G SPN  +  + I   C+ G ++ A
Sbjct: 293 GIACGVMTYNILIGGLCRGKKFGEAVKLVHKVNKVGLSPNIVTYNILINGFCDVGKMDTA 352

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLVWKL------------------ 195
              F++LK  G+  ++ T+N+ + G  K++      DLV ++                  
Sbjct: 353 VRLFNQLKSSGLSPTLVTYNTLIAGYSKVENLAGALDLVKEMEERCIARSKVTYTILIDA 412

Query: 196 ------------YHDLIE-SG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                        H L+E SG          LI   C +G + E  +  + + E  L P 
Sbjct: 413 FARLNYTDKACEMHSLMEKSGLVPDVYTYSVLIHGXCVNGNMKEASKPFKSLGEMHLQPN 472

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
           +  +N +I  +C++ +  R   LL+ MV     P+  ++   +  LC+  K  EA  +  
Sbjct: 473 SVIYNTMIHGYCKEGSSYRALRLLNEMVHSGMVPNVASFCSTMGLLCRDEKWKEAELLLG 532

Query: 294 DLKERGYVPDTVMYTTV 310
            +   G  P   +Y  V
Sbjct: 533 QMINSGLKPSVSLYKMV 549



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV--SELLHTMVARNRAPDNFT--YEEVI 276
           +L  +L  G++P+  +   LI R       GR+  S +L    A   +   +T  Y+ ++
Sbjct: 44  ILNHLLSSGMLPQAQS---LILRLIS----GRIPSSLMLQLTQAHFTSCSTYTPLYDAIV 96

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW--FEMIHKG 334
           N    S    +A    + +   G+ P +  +  ++  L +  +   A   W  F ++   
Sbjct: 97  NAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKA---WWIFNVLKSK 153

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           ++ N Y++  MI G C         RL   + + G     V Y TLI G C +G    A 
Sbjct: 154 VVLNAYSFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGCCKNGDVMLAK 213

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +LF +M + G+  +  TY+ L+ G+ K+G
Sbjct: 214 NLFCKMDRLGLVPNQHTYSVLMNGFFKQG 242



 Score = 41.2 bits (95), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 29/127 (22%), Positives = 55/127 (43%), Gaps = 9/127 (7%)

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA----K 359
           T +Y  +++          A      MIH+G  P   T+N+++    R +  ++A     
Sbjct: 89  TPLYDAIVNAYVHSHSTDQALTFLHHMIHEGHAPLSNTFNNLLCLLIRSNYFDKAWWIFN 148

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            L  +++   Y     ++  +I G C  G     + L   + + G+  +V+ Y TLI G 
Sbjct: 149 VLKSKVVLNAY-----SFGIMITGCCEAGYFVRVFRLLAVLEEFGLSPNVVIYTTLIDGC 203

Query: 420 CKEGKIV 426
           CK G ++
Sbjct: 204 CKNGDVM 210


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 147/327 (44%), Gaps = 33/327 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD  + N L           VA D  D     GF+ +  S    I+ LCE+G I+EA
Sbjct: 5   GWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEA 64

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F ++                      D+ D+   +Y        L++  CN  +  E
Sbjct: 65  VELFGEM----------------------DQPDM--HMY------AALVKGLCNAERGEE 94

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G  +LR++ E G  P   A+  ++   C ++      E+L  M  +  AP   T   VIN
Sbjct: 95  GLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVIN 154

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
             CK  +  +A RV   +K RG  P+   Y  ++ G C  G +  A  +  +M   G+ P
Sbjct: 155 AYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNP 214

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN +I G C   ++E A RL + M   G      TYN LI  LC  GRTD+A  LF
Sbjct: 215 DAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLF 274

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + +  +GI  + +T+N+LI G CK GK
Sbjct: 275 DSLETRGIKPNAVTFNSLINGLCKSGK 301



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 31/328 (9%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P +V+C  + ++  +    + A +V ++ +   G  PN  +    +Q  C  G + +
Sbjct: 141 GLAPCVVTCTAVINAYCKEGRMSDALRV-LELMKLRGCKPNVWTYNALVQGFCNEGKVHK 199

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A    +K++  GV     T+N                           LI+  C DG + 
Sbjct: 200 AMTLLNKMRACGVNPDAVTYN--------------------------LLIRGQCIDGHIE 233

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
             + LLR +  DGL+ +   +N LI+  C+     +   L  ++  R   P+  T+  +I
Sbjct: 234 SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 293

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NGLCKS K   A++    +   G  PDT  Y++ I  LCKM    +      EM+ K + 
Sbjct: 294 NGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 353

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   Y  +IH   +  N     R   EM+  G     VTY T +   C+ GR +EA ++
Sbjct: 354 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 413

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             EM++ G+  D + YNTL+ G+   G+
Sbjct: 414 LMEMSKNGVTVDTMAYNTLMDGHASIGQ 441



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 101/221 (45%), Gaps = 4/221 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI  +C   +V    +L  ++   G   +  ++  LI   CE        EL   M    
Sbjct: 16  LIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEM---- 71

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD   Y  ++ GLC + +  E   +   +KE G+ P T  Y  V+   C+     +A 
Sbjct: 72  DQPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAE 131

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           +M  EM  KGL P   T  ++I+ YC+   + +A R+ + M  +G      TYN L+ G 
Sbjct: 132 EMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGF 191

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G+  +A  L  +M   G+  D +TYN LI+G C +G I
Sbjct: 192 CNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHI 232



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 154/358 (43%), Gaps = 33/358 (9%)

Query: 101 GFSPDLVSCNVLF-----DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           G +PD V+ N+L      D  +E+ AF++ +  ++  G   +  +    I  LC+ G  +
Sbjct: 211 GVNPDAVTYNLLIRGQCIDGHIES-AFRL-LRLMEGDGLIADQYTYNALINALCKDGRTD 268

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A   F  L+  G+  +  T+NS + G  K  + D+ WK    ++ +G           I
Sbjct: 269 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFI 328

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +  C      EG   + ++L+  + P    +  +I +  +++N+G V+     MV+    
Sbjct: 329 EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN 388

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY   +   C   +  EA  V  ++ + G   DT+ Y T++ G   +G    A  +
Sbjct: 389 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSI 448

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV----------- 375
             +M     +PN++TY  ++    R+  +E+   L    + K    T V           
Sbjct: 449 LKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNE 508

Query: 376 ------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
                 TY++++ G    GRT+EA  L   M +  I  +   Y  L+  +CK  + ++
Sbjct: 509 FLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLD 566



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 4/201 (1%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++  G  P+   FN LI  +C         +L   M  R  A D  +Y  +I GLC++ +
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             EA  +F ++ +    PD  MY  ++ GLC      +   M   M   G  P+   Y +
Sbjct: 61  IDEAVELFGEMDQ----PDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPSTRAYAA 116

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           ++   CR    +EA+ + +EM +KG     VT   +I   C  GR  +A  + E M  +G
Sbjct: 117 VVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLELMKLRG 176

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
              +V TYN L+QG+C EGK+
Sbjct: 177 CKPNVWTYNALVQGFCNEGKV 197



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 141/353 (39%), Gaps = 29/353 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N L            AM  L+   + G +P+  +  L I+  C  G IE A
Sbjct: 176 GCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESA 235

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     ++  G+     T+N+ +    K  RTD    L+  L   G          LI  
Sbjct: 236 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 295

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK    ++ L +++  G  P+   ++  I   C+ K        +  M+ ++  P 
Sbjct: 296 LCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 355

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  VI+ L K R      R + ++   G  PD V YTT +   C  G L +A  +  
Sbjct: 356 TVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 415

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI------- 381
           EM   G+  +   YN+++ G+  I   + A  + K+M          TY  L+       
Sbjct: 416 EMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMR 475

Query: 382 ----------AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                     AG+       + + LF+ M +     +  TY+++++G+ ++G+
Sbjct: 476 LVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGR 528



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 159/352 (45%), Gaps = 29/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L + L ++    +A  FL+   S G +P+  +   +I+ LC+    +E 
Sbjct: 281 GIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 340

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ +  V  S   +   +   +K     LV + + +++ SG           ++A
Sbjct: 341 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 400

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G+++E   +L ++ ++G+  +  A+N L+              +L  M +    P+
Sbjct: 401 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 460

Query: 269 NFTY-------------EEVI----NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
            FTY             E+V+     G+ K+ +  + + +F+ +K+  ++P++  Y++++
Sbjct: 461 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 520

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G  + G   +A  +   M    +  NE  Y +++  +C+     +A  L   M+  G+ 
Sbjct: 521 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 580

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              ++Y  L++GL   G+TD+A  +F     K    D I +  +I G  K+G
Sbjct: 581 PQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKG 632



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/269 (22%), Positives = 112/269 (41%), Gaps = 25/269 (9%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP 138
           L +  NVL+ +       S  G + D ++ N L D          A+  L   T  +  P
Sbjct: 407 LNEAENVLMEM-------SKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVP 459

Query: 139 NSLELYI--QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N    +I  + L    L+E+       L   GV+ +I+   + + G         V K  
Sbjct: 460 NQFTYFILLRHLVRMRLVEDVL----PLTPAGVWKAIEL--TDVFGLFD------VMKKN 507

Query: 197 HDLIESGY---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
             L  SG    +++ F  DG+  E   L+  + ED +      +  L++ FC+ K +   
Sbjct: 508 EFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDA 567

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L+ +M+     P   +Y+ +++GL    +  +A  +F + + + Y PD +++  +I G
Sbjct: 568 WVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDG 627

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           L K G    +R+M   +      P+  TY
Sbjct: 628 LIKKGHSDISREMIIMLERMNCRPSHQTY 656


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/337 (27%), Positives = 156/337 (46%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPDL + N + ++L +ARA   A   L      G  P+  +    I     +G  +EA
Sbjct: 246 GISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEA 305

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                K+   G+   + T NS +    K  +      ++  +   G          ++  
Sbjct: 306 VRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIMLNG 365

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +   G + +  EL   +L DG+ P++  FN LI  + +     R + + + M  +   PD
Sbjct: 366 YATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPD 425

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  VI  LC+  K  +A   FN + ++G  P    Y  +I G C  G L  A+ +  
Sbjct: 426 VVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVL 485

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M++KG+ P+   +N +I+  C++  + +A+ +    +  G     + YNTL+ G CL G
Sbjct: 486 QMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVG 545

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + + A  +F+ M   GI  +V+ Y TL+ GYCK G+I
Sbjct: 546 KMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRI 582



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 168/336 (50%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ V+ N + D   +      A D  +     G SP+ ++    +  LC++  +++A   
Sbjct: 214 PNAVAYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAI 273

Query: 161 FSKLKEMGVFGSIKTWNSALLG---------CIKIDRTDLVWKLYHDLIESGYLIQAFCN 211
             ++ + GV     T+NS + G          +++ +      +  D++    L+ + C 
Sbjct: 274 LRQMVDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCK 333

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK+ +  ++   +   G   +  ++  +++ +  K     ++EL + M++   APD+  
Sbjct: 334 HGKIKDARDVFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHI 393

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +I    K      A  +FN+++E+G  PD V Y+TVI  LC++G + DA + + +MI
Sbjct: 394 FNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMI 453

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G+ P+  TY+ +I G+C   +L +AK L  +M++KG       +N +I  LC  GR  
Sbjct: 454 DQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVM 513

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +A ++F+     G+  +V+ YNTL+ GYC  GK+ N
Sbjct: 514 DAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMEN 549



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 166/345 (48%), Gaps = 13/345 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN---SLELYI 145
           ++R  + + S  G  PD+V+ N L  SL +    K A D  DS           S ++ +
Sbjct: 305 AVRVSKKMTSQ-GILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKIML 363

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK------LY 196
                 G + +    F+ +   G+      +N    A   C  +DR  +++       + 
Sbjct: 364 NGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVE 423

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            D++    +I A C  GK+ +  E   Q+++ G+ P  + ++ LI  FC   +  +  +L
Sbjct: 424 PDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDL 483

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+ +   PD   +  +IN LCK  + ++A  +F+     G  P+ ++Y T++ G C 
Sbjct: 484 VLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCL 543

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G + +A +++  M+  G+ PN   Y ++++GYC++  ++E   L +E+L KG   +T  
Sbjct: 544 VGKMENALRVFDVMVSAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPSTTL 603

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           YN ++ GL   GRT  A   F EM + GI  D  TY+ ++ G  K
Sbjct: 604 YNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYSIVLGGLFK 648



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 100/417 (23%), Positives = 167/417 (40%), Gaps = 103/417 (24%)

Query: 88  LSIRFFQWLHSHYG---FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSL 141
           L++  F  +   +G    SP L +  +L D    A   K+ + F      TG   +   +
Sbjct: 87  LAVALFNRVSRAHGPRVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMI 146

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
              ++ LCE+    EA               I       LGC+             D+  
Sbjct: 147 SNLLRGLCEAKRTAEAL-------------DILLHRMPHLGCVP------------DVFS 181

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLV--PENTAFNKLISRFCEKKNFGRVSELLHT 259
              ++++ C+D K  +  ELLR + E G V  P   A+N +I  F ++ +  +  +L + 
Sbjct: 182 YCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACDLFNE 241

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG------ 313
           MV R  +PD  TY  V+N LCK+R   +A  +   + ++G +PD   Y ++I+G      
Sbjct: 242 MVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGYSSTGQ 301

Query: 314 -----------------------------LCKMGWLGDARKMWFEMIHK----------- 333
                                        LCK G + DAR ++  M  K           
Sbjct: 302 WKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTDIFSYKI 361

Query: 334 ------------------------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
                                   G+ P+ + +N +I  Y +   L+ A  +  EM ++G
Sbjct: 362 MLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQG 421

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
                VTY+T+IA LC  G+ D+A   F +M  +G+   + TY+ LIQG+C  G ++
Sbjct: 422 VEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLL 478


>gi|414591646|tpg|DAA42217.1| TPA: hypothetical protein ZEAMMB73_097907 [Zea mays]
          Length = 476

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 133/257 (51%), Gaps = 12/257 (4%)

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYE-LLRQVLEDGLVP 232
           C +  R +L    +  L+ +G         +L++ FC   +  E  + LL +  E G VP
Sbjct: 121 CTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 180

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYR 290
           + +++N L+   C +   G+  +LL  M       +PD   Y  VI+G  K     +A  
Sbjct: 181 DVSSYNILLKSLCNQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDGFFKEGDVNKACD 240

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +F ++ +RG  PD V Y++V+H LCK   +  A     +M++KG+LPN +TYN++I+GY 
Sbjct: 241 LFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYS 300

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
                +EA R+ KEM         V  NTL+  LC +G+  EA  +F+ MA KG   +V 
Sbjct: 301 STGQWKEAVRVFKEMRRHNILLDVVNLNTLMGSLCKYGKIKEARDVFDTMAMKGQNPNVF 360

Query: 411 TYNTLIQGYCKEGKIVN 427
           +Y  ++ GY  +G +V+
Sbjct: 361 SYTIMLNGYATKGCLVD 377



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 16/288 (5%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            SP   +  + + C   +   E A   F +L   G+   I   N  L G  +  RTD   
Sbjct: 107 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 194 K-LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLV--PENTAFNKLI 241
             L H   E G          L+++ CN GK  +  +LLR + E G V  P+  A+  +I
Sbjct: 167 DILLHRTPELGCVPDVSSYNILLKSLCNQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVI 226

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             F ++ +  +  +L   MV R   PD  TY  V++ LCK+R   +A      +  +G +
Sbjct: 227 DGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVL 286

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+   Y  +I+G    G   +A +++ EM    +L +    N+++   C+   ++EA+ +
Sbjct: 287 PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHNILLDVVNLNTLMGSLCKYGKIKEARDV 346

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM----AQKGI 405
              M  KG      +Y  ++ G    G   +   LF+ M     Q+GI
Sbjct: 347 FDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDAQQQGI 394



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/294 (22%), Positives = 117/294 (39%), Gaps = 51/294 (17%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLEL 143
           L++ FF  L    G   D++  N L     EA+    A+D L       G  P+ +S  +
Sbjct: 129 LALAFFGQLL-RTGLRVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVSSYNI 187

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            ++ LC  G   +A      + E G   S  +  + + + G  K    +    L+ ++++
Sbjct: 188 LLKSLCNQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDGFFKEGDVNKACDLFKEMVQ 247

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          ++ A C    + +    LRQ++  G++P                    
Sbjct: 248 RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLP-------------------- 287

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
                          +N+TY  +I G   + +  EA RVF +++    + D V   T++ 
Sbjct: 288 ---------------NNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHNILLDVVNLNTLMG 332

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
            LCK G + +AR ++  M  KG  PN ++Y  M++GY     L +   L   ML
Sbjct: 333 SLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLML 386



 Score = 47.0 bits (110), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 40/91 (43%), Gaps = 1/91 (1%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P  YTY  ++    R    E A     ++L  G     +  N L+ G C   RTDEA 
Sbjct: 107 LSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKRTDEAL 166

Query: 395 H-LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             L     + G   DV +YN L++  C +GK
Sbjct: 167 DILLHRTPELGCVPDVSSYNILLKSLCNQGK 197


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/365 (27%), Positives = 165/365 (45%), Gaps = 27/365 (7%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---------------- 131
           L++R+F W       S  L     +  SL  A+ +     FLD+                
Sbjct: 77  LTLRYFTWSQKELKLSHSLELTFRMLHSLAYAKKYSKIRSFLDNCVQNDKNYPVSFIFHA 136

Query: 132 ---TGFSPNPNSLELYIQCLCESGLIEE--AFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
              +G S   NS+ + I    ++  ++    F AF +  + G+  S+ + N  + G +K+
Sbjct: 137 ISVSGDSFCANSIIVDILVWADAKNLKTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKM 196

Query: 187 DRTDLVWK------LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
            + D + K      +  + +    LI  FCND  VS   ++  ++   G+ P    +N L
Sbjct: 197 YKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSL 256

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+  C        + L   MV     P+  T+  ++NG CK++   +A  +F D+ ++  
Sbjct: 257 INGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRI 316

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+   Y  +I   CK   + DA  ++  M+ KG+ P+  TYN +I G CR  +LE A+ 
Sbjct: 317 TPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARN 376

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
              EM  K      +TYN L+  LC  G   +   L +EM +KG+    +TYNT+I GY 
Sbjct: 377 RVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYS 436

Query: 421 KEGKI 425
           KEG +
Sbjct: 437 KEGNL 441



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 116/269 (43%), Gaps = 9/269 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S YG    + SCN L   LV+       +  + + G  PN  +  + I   C    +  A
Sbjct: 175 SDYGLKLSVTSCNPLMSGLVKMYKADAILKEMKADGICPNEVTFNILIDGFCNDKNVSVA 234

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F+++   GV  ++ T+NS + G     + +    L   ++ S           L+  
Sbjct: 235 MKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNG 294

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +  V +  EL   + +  + P  T +N LI  +C+ +N      L   M+ +   PD
Sbjct: 295 FCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPD 354

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I GLC+      A    +++  +    D + Y  ++  LC  G +    ++  
Sbjct: 355 VSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLRLLD 414

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           EM  KGL P++ TYN+MI GY +  NL +
Sbjct: 415 EMCKKGLKPSQLTYNTMIDGYSKEGNLRQ 443


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 155/340 (45%), Gaps = 15/340 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  PD+V    L DSL      K A   MD +   G  PN  +  + I  +C+ G +
Sbjct: 210 SGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSV 269

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----------G 203
           +EA    + + E GV     T+N+ + G   +   D    L  ++I              
Sbjct: 270 KEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFN 329

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I   C  G++ + +++   + E+G       FN LI          +  EL+  M + 
Sbjct: 330 SVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASS 389

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD+FTY  +ING CK  +   A  + + ++  G  P+ V Y  ++  LC+ G +  A
Sbjct: 390 GLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQA 449

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           R  +F+ +HK    +   Y++MIHG CR+ + + A+   K MLD+G    +VTY+ LI  
Sbjct: 450 RN-FFDEMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINM 508

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               G    A  + ++M   G   DV  +++LI+GY  +G
Sbjct: 509 FANSGDLGAAERVLKQMTASGFVPDVAVFDSLIKGYGAKG 548



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 2/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A C + +  +   LLR +   G+ P+   +  LI   C+  +  +  ELL  M    
Sbjct: 119 LMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESG 178

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+   Y  ++ G CK+ +     +VF ++  RG  PD VMYT +I  LC+ G +  A 
Sbjct: 179 IEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKAT 238

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  +M+ +GL PN  TYN +I+  C+  +++EA  L   ML+KG     VTYNTLI GL
Sbjct: 239 QVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGL 298

Query: 385 CLHGRTDEAYHLFEEM--AQKGIFRDVITYNTLIQGYCKEGKI 425
                 DEA  L EEM   +  +  +V+T+N++I G CK G++
Sbjct: 299 SGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRM 341



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 104/401 (25%), Positives = 185/401 (46%), Gaps = 21/401 (5%)

Query: 41  TEIAKQVCKITRTKPRWEQ-TLLSDIPSFNFNDPLFFREFLK---QQNNVLLSIRFFQWL 96
            E + ++ ++ R  P  E   LLS +PS    D + +   L    +Q   L +  F   +
Sbjct: 47  AEASARLNRLLRLVPLPESPALLSSLPSVR--DAVSYNTVLAALCRQGGCLDAALFLLRV 104

Query: 97  HSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGL 153
            +H    P  VS   L  +L   R    A+  L    ++G  P+  +    I+ LC++  
Sbjct: 105 MAHE-TRPTAVSYTTLMRALCAERRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAAD 163

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
           +++A     ++ E G+  ++  ++  L G  K  R + V K++ ++   G          
Sbjct: 164 VDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTG 223

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI + C +GKV +  +++ +++E GL P    +N LI+  C++ +      L + M+ + 
Sbjct: 224 LIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKG 283

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDL--KERGYVPDTVMYTTVIHGLCKMGWLGD 322
            A D  TY  +I GL    +  EA  +  ++   E    P+ V + +VIHGLCK G +  
Sbjct: 284 VALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQ 343

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++   M   G   N  T+N +I G  R+  +++A  L  EM   G    + TY+ LI 
Sbjct: 344 AFQVRDMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILIN 403

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G C   + D A  L  +M + GI  +++ Y  L+   C++G
Sbjct: 404 GFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQG 444



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/233 (31%), Positives = 129/233 (55%), Gaps = 8/233 (3%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++  G LI+  C+   V +  ELLR++ E G+ P    ++ L+  +C+   +  VS++ 
Sbjct: 147 DVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYCKAGRWECVSKVF 206

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD   Y  +I+ LC+  K  +A +V + + ERG  P+ V Y  +I+ +CK 
Sbjct: 207 EEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKE 266

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---- 373
           G + +A  +   M+ KG+  +  TYN++I G   +  ++EA  L +EM+   +GET    
Sbjct: 267 GSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMI---HGETMVEP 323

Query: 374 -TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VT+N++I GLC  GR  +A+ + + MA+ G   +++T+N LI G  +  K+
Sbjct: 324 NVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFNLLIGGLLRVHKV 376



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/195 (28%), Positives = 98/195 (50%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           V +  ++N +++  C +      +  L  ++A    P   +Y  ++  LC  R+  +A  
Sbjct: 75  VRDAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVG 134

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           +  D++  G  PD V Y T+I GLC    +  A ++  EM   G+ PN   Y+ ++ GYC
Sbjct: 135 LLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCLLQGYC 194

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +    E   ++ +EM  +G     V Y  LI  LC  G+  +A  + ++M ++G+  +V+
Sbjct: 195 KAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGLEPNVV 254

Query: 411 TYNTLIQGYCKEGKI 425
           TYN LI   CKEG +
Sbjct: 255 TYNVLINSMCKEGSV 269


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 108/423 (25%), Positives = 187/423 (44%), Gaps = 49/423 (11%)

Query: 17  RNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWE------QTLLSDIPSFNF 70
           R F +P+ +   +S+    +           C + R K   E        L S I     
Sbjct: 25  RIFSSPSEESHGISLAATPTM---------ACILVRAKMHEEIEELHNLILSSSIQKTKL 75

Query: 71  NDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFS-PDLVSCNVLFDSLVEARAFK-VAMDF 128
           +  L       + N++  +   FQ++ S +  + P +   NVL +S +  R  + V+  +
Sbjct: 76  SSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKPGIYLYNVLLESCIRERRVEFVSWLY 135

Query: 129 LDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
            D    G SP   +  L I+ LC+S  ++ A   F ++ E G   +  T+          
Sbjct: 136 KDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTF---------- 185

Query: 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
                           G L++ +C  G   +G ELL  +   G++P    +N ++S FC 
Sbjct: 186 ----------------GILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCR 229

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV----P 302
           +       +L+  M      PD  T+   I+ LCK  K L+A R+F+D++   Y+    P
Sbjct: 230 EGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRP 289

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           +++ Y  ++ G CK+G L DA+ ++  +     L +  +YN  + G  R     EA+ + 
Sbjct: 290 NSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVL 349

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           K+M+DKG G +  +YN L+ GLC  G   +A  +   M + G+  D +TY  L+ GYC  
Sbjct: 350 KQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSV 409

Query: 423 GKI 425
           GK+
Sbjct: 410 GKV 412



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 195/435 (44%), Gaps = 56/435 (12%)

Query: 39  LYTEIAKQVCKITR-------TKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIR 91
           +Y  I    C+  R        +   E+ L+ DI +FN       +E       VL + R
Sbjct: 219 VYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKE-----GKVLDASR 273

Query: 92  FFQ--WLHSHYGFS-PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---I 145
            F    L  + G   P+ ++ N++     +    + A    +S   + +  SL+ Y   +
Sbjct: 274 IFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWL 333

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKLYH---- 197
           Q L   G   EA     ++ + G+  SI ++N  + G  K+    D   +V  +      
Sbjct: 334 QGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVS 393

Query: 198 -DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE- 255
            D +  G L+  +C+ GKV     LL++++ +  +P     N L+       N GR+SE 
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLW---NMGRISEA 450

Query: 256 --LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY------------- 300
             LL  M  +    D  T   +++GLC S +  +A  +   ++  G              
Sbjct: 451 EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGL 510

Query: 301 ----------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
                     +PD + Y+T+++GLCK G   +A+ ++ EM+ + L P+   YN  IH +C
Sbjct: 511 VDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFC 570

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   +  A R+ K+M  KG  ++  TYN+LI GL +  +  E + L +EM +KGI  ++ 
Sbjct: 571 KQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGISPNIC 630

Query: 411 TYNTLIQGYCKEGKI 425
           TYNT IQ  C+ GK+
Sbjct: 631 TYNTAIQYLCEGGKV 645



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 101/412 (24%), Positives = 173/412 (41%), Gaps = 77/412 (18%)

Query: 90  IRFFQWLHSHY---GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLEL 143
           + F  WL+      G SP+  + N+L  +L ++     A +  D     G  PN  +  +
Sbjct: 128 VEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGI 187

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            ++  C++GL ++     + ++  GV  +   +N+ +    +  R D   KL   + E G
Sbjct: 188 LVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEG 247

Query: 204 YL---------IQAFCNDGKVSEGYELLRQVLED---GLV-PENTAFNKLISRFCE---- 246
            +         I A C +GKV +   +   +  D   GL  P +  +N ++  FC+    
Sbjct: 248 LVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLL 307

Query: 247 ---KKNFGRVSE----------------------------LLHTMVARNRAPDNFTYEEV 275
              K  F  + E                            +L  M+ +   P  ++Y  +
Sbjct: 308 EDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNIL 367

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ++GLCK     +A  +   +K  G  PD V Y  ++HG C +G +  A+ +  EM+    
Sbjct: 368 MDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNC 427

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           LPN YT N ++H    +  + EA+ L ++M +KGYG  TVT N ++ GLC  G  D+A  
Sbjct: 428 LPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIE 487

Query: 396 LFEEMAQKG-----------------------IFRDVITYNTLIQGYCKEGK 424
           + + M   G                          D+ITY+TL+ G CK G+
Sbjct: 488 IVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGR 539



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 153/355 (43%), Gaps = 38/355 (10%)

Query: 105 DLVSC---NVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           DLVS    N+    LV    F  A   L      G  P+  S  + +  LC+ G++ +A 
Sbjct: 322 DLVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAK 381

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC-------- 210
                +K  GV     T+   L G   + + D    L  +++ +  L  A+         
Sbjct: 382 TIVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSL 441

Query: 211 -NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--------- 260
            N G++SE  ELLR++ E G   +    N ++   C      +  E++  M         
Sbjct: 442 WNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALG 501

Query: 261 --------------VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                         +  N  PD  TY  ++NGLCK+ +  EA  +F ++      PD++ 
Sbjct: 502 NLGNSYIGLVDDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLA 561

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y   IH  CK G +  A ++  +M  KG   +  TYNS+I G    + + E   L  EM 
Sbjct: 562 YNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMR 621

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +KG      TYNT I  LC  G+ ++A +L +EM QK I  +V ++  LI  +CK
Sbjct: 622 EKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCK 676



 Score =  111 bits (277), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/369 (25%), Positives = 160/369 (43%), Gaps = 47/369 (12%)

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDF- 128
             +  LK  NN  L+ R F+ + S      +G S  L +   +   LV A+  +   +  
Sbjct: 5   LVKALLKNTNNPRLAWRIFKRIFSSPSEESHGIS--LAATPTMACILVRAKMHEEIEELH 62

Query: 129 ---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF----SKLKEMGVFGSIKTWNSALL 181
              L S+      +SL   +    +S  I++AF  F    S+  E      I  +N  L 
Sbjct: 63  NLILSSSIQKTKLSSLLSVVSIFAKSNHIDKAFPQFQFVRSRFPENKP--GIYLYNVLLE 120

Query: 182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
            CI+  R + V  LY D++         C                  G+ PE   FN LI
Sbjct: 121 SCIRERRVEFVSWLYKDMV--------LC------------------GISPETYTFNLLI 154

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+        EL   M  +   P+ FT+  ++ G CK+    +   + N ++  G +
Sbjct: 155 RALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVL 214

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+ V+Y T++   C+ G   D+ K+  +M  +GL+P+  T+NS I   C+   + +A R+
Sbjct: 215 PNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRI 274

Query: 362 HKEM-LDKGYG---ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
             +M LD+  G     ++TYN ++ G C  G  ++A  LFE + +      + +YN  +Q
Sbjct: 275 FSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQ 334

Query: 418 GYCKEGKIV 426
           G  + GK +
Sbjct: 335 GLVRHGKFI 343



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/330 (23%), Positives = 152/330 (46%), Gaps = 17/330 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+  +CN+L  SL        A + L   +  G+  +  +  + +  LC SG +++A   
Sbjct: 429 PNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAI-- 486

Query: 161 FSKLKEMGVFGSIKTWN--SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
              +K M V GS    N  ++ +G +  D + +      DLI    L+   C  G+ +E 
Sbjct: 487 -EIVKGMRVHGSAALGNLGNSYIGLV--DDSLIENNCLPDLITYSTLLNGLCKAGRFAEA 543

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             L  +++ + L P++ A+N  I  FC++        +L  M  +       TY  +I G
Sbjct: 544 KTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILG 603

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           L    +  E + + ++++E+G  P+   Y T I  LC+ G + DA  +  EM+ K + PN
Sbjct: 604 LGIKNQIFEIHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPN 663

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLD---KGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            +++  +I  +C++ + + A+ + +  +    +  G  ++ +N L+A     G+  +A  
Sbjct: 664 VFSFKYLIGAFCKVPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAA----GQLLKATE 719

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L E +  +G       Y  L+   CK+ ++
Sbjct: 720 LLEAVLDRGFELGTFLYKDLVVSLCKKDEL 749



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/170 (29%), Positives = 90/170 (52%), Gaps = 4/170 (2%)

Query: 262 ARNRAPDN----FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            R+R P+N    + Y  ++    + R+      ++ D+   G  P+T  +  +I  LC  
Sbjct: 101 VRSRFPENKPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDS 160

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  AR+++ EM  KG  PNE+T+  ++ GYC+    ++   L   M   G     V Y
Sbjct: 161 SCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVY 220

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           NT+++  C  GR D++  L E+M ++G+  D++T+N+ I   CKEGK+++
Sbjct: 221 NTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLD 270



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 131/307 (42%), Gaps = 40/307 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCA 160
           PDL++ + L + L +A  F  A   F +  G    P+SL   ++I   C+ G I  AF  
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFRV 581

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
              +++ G   S++T+NS +LG                    G   Q F       E + 
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGL-------------------GIKNQIF-------EIHG 615

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ ++ E G+ P    +N  I   CE       + LL  M+ +N AP+ F+++ +I   C
Sbjct: 616 LMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFC 675

Query: 281 KSRKRLEAYRVFNDL-----KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           K      A  VF        ++ G      +Y+ + + L   G L  A ++   ++ +G 
Sbjct: 676 KVPDFDMAQEVFETAVSICGQKEG------LYSLMFNELLAAGQLLKATELLEAVLDRGF 729

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
               + Y  ++   C+ D LE A  +  +M+DKGYG        +I GL   G   EA +
Sbjct: 730 ELGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANN 789

Query: 396 LFEEMAQ 402
             E+M +
Sbjct: 790 FAEKMME 796



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 8/188 (4%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           MD +   G SPN  +    IQ LCE G +E+A     ++ +  +  ++ ++   +    K
Sbjct: 617 MDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCK 676

Query: 186 IDRTDLVWKLYHDLI------ESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           +   D+  +++   +      E  Y  +       G++ +  ELL  VL+ G       +
Sbjct: 677 VPDFDMAQEVFETAVSICGQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLY 736

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
             L+   C+K      S +LH M+ +    D      VI+GL K   + EA      + E
Sbjct: 737 KDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMME 796

Query: 298 RGYVPDTV 305
              V +  
Sbjct: 797 MASVGEVA 804


>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
          Length = 1595

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  P +V  NVL D           +  L   ++ GF P   +    I  L + G +E+ 
Sbjct: 1008 GCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTYGSLINWLGKKGDLEKI 1067

Query: 158  FCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKLY------HDLIESGYLIQA 208
               F ++++ G   +++ +NS   AL  C    +  ++ K         D+I    LI  
Sbjct: 1068 GSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITG 1127

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             C++G V +    LR+ +   L P   ++  LI  FC +      S+LL  M+ R   PD
Sbjct: 1128 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPD 1187

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              T+  +I+GL  + K  EA  V   + ER   PD  +Y  +I GLCK   L  A+ +  
Sbjct: 1188 VVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILE 1247

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            EM+ K + P+E+ Y ++I G+ R +NL +A+++ + M  KG     V+ N +I G C  G
Sbjct: 1248 EMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFG 1307

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               EA      M + G   D  TY T+I GY K+G +
Sbjct: 1308 MMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNL 1344



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 12/338 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
            GFSP++   N + D+L   R+   AM  L    ++G  P+  +    I  LC  G + +A
Sbjct: 1078 GFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 1137

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLG-CIK---IDRTDLVWKLY-----HDLIESGYLIQA 208
                 +     +  +  ++   + G C++   +  +DL+ ++       D++  G LI  
Sbjct: 1138 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHG 1197

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                GKVSE   +  ++ E  + P+   +N LIS  C+K+       +L  M+ +N  PD
Sbjct: 1198 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPD 1257

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             F Y  +I+G  +S    +A ++F  ++ +G  PD V    +I G C+ G + +A     
Sbjct: 1258 EFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILCMS 1317

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M   G +P+E+TY ++I GY +  NL  A R   +M+ +      VTY++LI G C  G
Sbjct: 1318 NMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTG 1377

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             TD A  LF  M  + +  +V+TY  LI    K+ K++
Sbjct: 1378 DTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVL 1415



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 171/393 (43%), Gaps = 25/393 (6%)

Query: 53   TKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVL---LSIRFFQWLHS---HYGF-SPD 105
            T P W ++L + +PS     PL         +++    L++    W  S   H     P 
Sbjct: 817  TNPTWARSLAALLPS-----PLSDAHLAAAVSSLPDPDLAVALLSWSQSPDHHVALQDPT 871

Query: 106  LVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
             ++ + L   L  +R F    D L S    G +P    L   +    ++G++ +A     
Sbjct: 872  PLAHSTLLRLLARSRRFDAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATEMCE 931

Query: 163  KLKEM-GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI--ESG-------YLIQAFCND 212
            +++E  G    +   N  L   ++  R D   KLY +++  +SG        L++  C +
Sbjct: 932  RVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLE 991

Query: 213  GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
             +V EG +L+      G +P    +N LI  +C + + GR   LL  M      P   TY
Sbjct: 992  RRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETNGFLPTLVTY 1051

Query: 273  EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
              +IN L K     +   +F ++++RG+ P+  +Y +VI  LC       A  +  +M  
Sbjct: 1052 GSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFA 1111

Query: 333  KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
             G  P+  T+N++I G C   ++ +A+   +E + +      ++Y  LI G C+ G    
Sbjct: 1112 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMV 1171

Query: 393  AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  L  EM  +G   DV+T+  LI G    GK+
Sbjct: 1172 ASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKV 1204



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 151/355 (42%), Gaps = 29/355 (8%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G +PD+V+   L   LV A     A+   + +      P+ N   + I  LC+  ++  A
Sbjct: 1183 GHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAA 1242

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 ++ E  V      + + + G I+ +      K++          D++    +I+ 
Sbjct: 1243 KNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKG 1302

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            +C  G +SE    +  + + G +P+   +  +IS + ++ N       L  M+ R   P+
Sbjct: 1303 YCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPN 1362

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +ING CK+     A  +F +++     P+ V YT +I  L K   +  A   + 
Sbjct: 1363 VVTYSSLINGYCKTGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFE 1422

Query: 329  EMIHKGLLPNEYTYNSMIHGY-----CRIDNLE-EAKRLH----------KEMLDKGYGE 372
             M+     PN+ T + +++G      C I+++      +H          K + D G   
Sbjct: 1423 TMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPR 1482

Query: 373  TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             +  YN +I  LC H    EA      MA+KG   + IT+ +L+ G+C  GK VN
Sbjct: 1483 NS-AYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVN 1536



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 124/331 (37%), Gaps = 32/331 (9%)

Query: 104  PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
            PD      L D  + +     A    +F++  G  P+  S    I+  C+ G++ EA   
Sbjct: 1256 PDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCPDIVSCNAMIKGYCQFGMMSEAILC 1315

Query: 161  FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
             S ++++G      T+ + + G  K    +   +   D+I+            LI  +C 
Sbjct: 1316 MSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCK 1375

Query: 212  DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             G       L   +  + L P    +  LI    +K    R      TM+  + +P++ T
Sbjct: 1376 TGDTDSAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVT 1435

Query: 272  YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
               ++NGL           V N +            T+ +HG  K   L   +K+ F++ 
Sbjct: 1436 LHYLVNGLTSCTPC-----VINSI---------CCNTSEVHG--KDALLVVFKKLVFDIG 1479

Query: 332  HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                 P    YN++I   CR + L EA      M  KGY    +T+ +L+ G C  G++ 
Sbjct: 1480 D----PRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSV 1535

Query: 392  EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                +     Q+  F  +  Y  L   Y  E
Sbjct: 1536 NWRTILPNEFQQEEFEIIFRYKFLFDQYATE 1566


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMD-FLD--STGFSPNPNSLELYIQCLCESGLIEE 156
           +G  P   +C     +L +   ++ A   F+D  + G  PN  +    I  LC SG+++ 
Sbjct: 314 HGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKV 373

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A   F ++   GVF +  T+N+ +   ++  R    + + +         +++    +I+
Sbjct: 374 AIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIK 433

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C  G   +   ++  +L+ G       +N +I  +C+  N      +L  M      P
Sbjct: 434 GYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKP 493

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D ++Y E+I G CK  K   A+ +FN++ + G  P+ V YT +I G CK   L  A  + 
Sbjct: 494 DEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLL 553

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G  PN  TYN +IHG  + +N   A+ L K M+++G     VTY  +I GLC +
Sbjct: 554 EHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKN 613

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G T  A  +F +M ++G   +++TY++LI+   +EGK+
Sbjct: 614 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKV 651



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 135/299 (45%), Gaps = 9/299 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    I  LC+SG + EAF    ++   G+  +  T    ++    +   +  
Sbjct: 280 GCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDA 339

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           W+L+ D+   G          LI   C  G +     L  ++  DG+ P    +N LI+ 
Sbjct: 340 WRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINI 399

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             E +       +L+ M     +P+  TY E+I G C      +A  V N++ +RG+  +
Sbjct: 400 LVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSAN 459

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y T+I G C  G    A ++   M   G  P+E++Y  +I G+C+I  +E A  L  
Sbjct: 460 LVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFN 519

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EM+D G     VTY  LI G C   + D A  L E M + G   +V TYN LI G  K+
Sbjct: 520 EMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQ 578



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 155/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +   L   L  +   KVA+     +   G  PN  +    I  L E+  I+ A
Sbjct: 350 GCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYA 409

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F   + +   G   +I T+N  + G   +        + +++++ G+         +I+ 
Sbjct: 410 FVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKG 469

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C+ G  +    +L  + + G  P+  ++ +LI  FC+         L + MV     P+
Sbjct: 470 YCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPN 529

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  K   A  +   +K  G  P+   Y  +IHGL K      A ++  
Sbjct: 530 EVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCK 589

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI +G+ PN  TY +MI G C+  +   A  +  +M+++G     +TY++LI  L   G
Sbjct: 590 VMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEG 649

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +EA +LF E+ + G+  D ITY  +I+ Y   GK+
Sbjct: 650 KVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKV 686



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 159/348 (45%), Gaps = 15/348 (4%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELY 144
           ++I  F  + S  G  P+ V+ N L + LVE R  K   V ++ +   G SPN  +    
Sbjct: 373 VAIGLFHRM-SRDGVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEM 431

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG- 203
           I+  C  G  ++A    + + + G   ++ T+N+ + G      T    ++  DL+  G 
Sbjct: 432 IKGYCILGDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRIL-DLMRDGG 490

Query: 204 ---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     LI  FC   K+   + L  ++++DGL P    +  LI  +C+ +     +
Sbjct: 491 CKPDEWSYTELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTAT 550

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            LL  M      P+  TY  +I+GL K      A  +   + E G  P+ V YT +I GL
Sbjct: 551 SLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGL 610

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK G    A +M+ +MI +G LPN  TY+S+I    +   +EEA+ L  E+   G     
Sbjct: 611 CKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDE 670

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +TY  +I    + G+ + A++    M + G    + TY  LI+G   E
Sbjct: 671 ITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKNE 718



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 128/266 (48%), Gaps = 13/266 (4%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
           MG+F     +++ L+   ++  T  V   YH ++  G          +I A C DG V++
Sbjct: 178 MGLFA----YSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVAD 233

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              ++++V E  + P+   +  +I   C K +     ++ + M      P+  TY  +IN
Sbjct: 234 AETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLIN 293

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLC S +  EA+ +  ++   G +P     T  I  LC MG   DA +++ +M +KG  P
Sbjct: 294 GLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N YTY ++I G C    L+ A  L   M   G    TVTYN LI  L  + R   A+ + 
Sbjct: 354 NVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
             M + G   +++TYN +I+GYC  G
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILG 439



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S G  PN       I  LC+ G + +A     K+ E  +     T+ S +LG  +    D
Sbjct: 208 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 267

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              ++++ + + G          LI   C+ G+V+E ++L+R+++  G++P        I
Sbjct: 268 SALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPI 327

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
              C+   +     L   M  +   P+ +TY  +I+GLC S     A  +F+ +   G  
Sbjct: 328 IALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVF 387

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           P+TV Y  +I+ L +   +  A  +   M   G  PN  TYN MI GYC + + ++A  +
Sbjct: 388 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLV 447

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
              ML +G+    VTYNT+I G C  G T  A  + + M   G   D  +Y  LI G+CK
Sbjct: 448 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 507

Query: 422 EGKI 425
             K+
Sbjct: 508 ISKM 511



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 71/248 (28%), Positives = 110/248 (44%), Gaps = 35/248 (14%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           +LI++  +   ++     L  + + GL     A++ L+           V +  H M++ 
Sbjct: 150 HLIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE 209

Query: 264 NRAPDNFTYEEVINGLCKS----------RKRLE-------------------------A 288
              P+   Y  VIN LCK           +K  E                         A
Sbjct: 210 GVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSA 269

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +VFN + + G  P+TV Y+T+I+GLC  G + +A  +  EMI  G+LP  +T    I  
Sbjct: 270 LQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIA 329

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C +   E+A RL  +M +KG      TY  LI+GLC+ G    A  LF  M++ G+F +
Sbjct: 330 LCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPN 389

Query: 409 VITYNTLI 416
            +TYN LI
Sbjct: 390 TVTYNALI 397



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 140/359 (38%), Gaps = 36/359 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+   L D   +      A   L+    +G  PN  +  + I  L +      A
Sbjct: 525 GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLIHGLTKQNNFSGA 584

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                 + E G+F ++ T+ + + G  K   T L  ++++ +IE G          LI+A
Sbjct: 585 EELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRA 644

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +GKV E   L  ++   GL+P+   + K+I  +            L  M+     P 
Sbjct: 645 LGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPT 704

Query: 269 NFTYEEVINGLCK----SRKRLEA-----------YRVFND---------LKERGYVPDT 304
            +TY  +I GL      + +RL A           Y+  +          L E       
Sbjct: 705 LWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMSAKLAELDPGLSV 764

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
            +   ++  L   G   +A ++   MI +GL P++  YNS++    R+ N++ A  + K 
Sbjct: 765 QVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKH 824

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           M  +G       Y  LI  LC   R  EA   FE M  +    D +    LI G  ++G
Sbjct: 825 MSTQGCEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDG 883



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 75/147 (51%), Gaps = 1/147 (0%)

Query: 280 CKSRKRLEAYRVFND-LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           C S++ +     F D L + G       Y+ ++  L ++G        +  M+ +G+ PN
Sbjct: 155 CHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPN 214

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YN++I+  C+  N+ +A+ + K++ +      T TY ++I G C     D A  +F 
Sbjct: 215 LLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFN 274

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +MA++G   + +TY+TLI G C  G++
Sbjct: 275 QMAKEGCEPNTVTYSTLINGLCDSGRV 301



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 68/305 (22%), Positives = 115/305 (37%), Gaps = 21/305 (6%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           AF +  + +D  G  PN  +    I   C+   ++ A      +K  G   +++T+N  +
Sbjct: 514 AFGLFNEMVDD-GLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVLI 572

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K +      +L   +IE G          +I   C +G  S   E+  +++E G +
Sbjct: 573 HGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQGCL 632

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    ++ LI    ++        L   +      PD  TY ++I     S K   A+  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + + G  P    Y  +I GL     L D R           LP+     S   GY  
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQR--------LAALPDVVPNCSF--GYQT 742

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            D  +    +  ++ +   G +    N L++ L   GR  EA  L   M  +G+  D   
Sbjct: 743 TDQ-DAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEA 801

Query: 412 YNTLI 416
           YN+L+
Sbjct: 802 YNSLL 806



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+      G+  E  ELL  ++  GL P+  A+N L+      +N      +   M  + 
Sbjct: 770 LVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQG 829

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
                  Y+E+I  LC+  +R EA   F ++  R + PD V+   +I GL + G+    +
Sbjct: 830 CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWNPDDVVQAVLIDGLLRDGY----K 885

Query: 325 KMWFEMIH 332
            +  E +H
Sbjct: 886 DLCMEFLH 893


>gi|449442212|ref|XP_004138876.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Cucumis sativus]
 gi|449499387|ref|XP_004160802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g24830-like [Cucumis sativus]
          Length = 633

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 166/345 (48%), Gaps = 26/345 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  + N++            A+D    + ++G  P+  +  + +  LC+ G++ +A
Sbjct: 199 GPSPNCATYNIIIKGFCLRMNMDKALDLFYTMVNSGIRPSRITYNILLHALCKRGILVDA 258

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKID---------RTDLVW------KLYHDLIES 202
                KL E+ +   IKT + A+   I +D         +   +W      K   D++  
Sbjct: 259 ----RKLLEVILGDDIKTTDDAITSTILMDSCFKSGDTIQAVALWDKMVEKKTEIDVVAY 314

Query: 203 GYLIQAFC--NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
             LI   C   D K++ GY  +  +L+ G +P+   +N LIS FC++  FG    +   M
Sbjct: 315 NVLIHGLCLNQDKKIALGY--VADMLKRGFLPDIFTYNTLISAFCKEGQFGDAYYIHDVM 372

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
                +PD   Y+ +I  LC +   ++A    + + E+  VP+  ++  +I    + G+L
Sbjct: 373 SRMGVSPDQILYKMIIQALCMNGDAIKADEFLHSMLEKSMVPEPHIWNLIIDCYGRYGYL 432

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A     +M+  G+ PN +TYN++IH   R  N+  A  L KEML  G     VTYN L
Sbjct: 433 SNAISKRDQMLVAGVQPNVFTYNALIHAQVRGGNIFSAYSLKKEMLLLGLFPDVVTYNLL 492

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           I G C HG+   A  L++EM +KG   D ITY  LI G+C  G++
Sbjct: 493 INGACKHGQLRFALQLYDEMLRKGYEADKITYTELINGHCMCGEM 537



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 112/235 (47%), Gaps = 10/235 (4%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           DL+   YL+   C +  +     L R++LE G  P    +N +I  FC + N  +  +L 
Sbjct: 168 DLVTHNYLLNGLCINCDMEMADSLFREMLEMGPSPNCATYNIIIKGFCLRMNMDKALDLF 227

Query: 258 HTMVARNRAPDNFTYEEVINGLCK------SRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
           +TMV     P   TY  +++ LCK      +RK LE   + +D+K      D +  T ++
Sbjct: 228 YTMVNSGIRPSRITYNILLHALCKRGILVDARKLLEVI-LGDDIKT---TDDAITSTILM 283

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
               K G    A  +W +M+ K    +   YN +IHG C   + + A     +ML +G+ 
Sbjct: 284 DSCFKSGDTIQAVALWDKMVEKKTEIDVVAYNVLIHGLCLNQDKKIALGYVADMLKRGFL 343

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               TYNTLI+  C  G+  +AY++ + M++ G+  D I Y  +IQ  C  G  +
Sbjct: 344 PDIFTYNTLISAFCKEGQFGDAYYIHDVMSRMGVSPDQILYKMIIQALCMNGDAI 398



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/241 (26%), Positives = 104/241 (43%), Gaps = 40/241 (16%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L + VLE    P+ T    ++   C K  FG    L   ++    A D  T+  ++NGLC
Sbjct: 124 LQKCVLEATQQPDYTV---MVRDLCLKGKFGAALLLRRKLIKEGFAVDLVTHNYLLNGLC 180

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
            +     A  +F ++ E G  P+   Y  +I G C    +  A  +++ M++ G+ P+  
Sbjct: 181 INCDMEMADSLFREMLEMGPSPNCATYNIIIKGFCLRMNMDKALDLFYTMVNSGIRPSRI 240

Query: 341 TYNSMIHGYCRIDNLEEAKRLHK------------------------------------- 363
           TYN ++H  C+   L +A++L +                                     
Sbjct: 241 TYNILLHALCKRGILVDARKLLEVILGDDIKTTDDAITSTILMDSCFKSGDTIQAVALWD 300

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M++K      V YN LI GLCL+     A     +M ++G   D+ TYNTLI  +CKEG
Sbjct: 301 KMVEKKTEIDVVAYNVLIHGLCLNQDKKIALGYVADMLKRGFLPDIFTYNTLISAFCKEG 360

Query: 424 K 424
           +
Sbjct: 361 Q 361



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/296 (23%), Positives = 122/296 (41%), Gaps = 29/296 (9%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V+ NVL   L   +  K+A+ ++      GF P+  +    I   C+ G   +A+   
Sbjct: 310 DVVAYNVLIHGLCLNQDKKIALGYVADMLKRGFLPDIFTYNTLISAFCKEGQFGDAYYIH 369

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
             +  MGV                     +++K+         +IQA C +G   +  E 
Sbjct: 370 DVMSRMGV-----------------SPDQILYKM---------IIQALCMNGDAIKADEF 403

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           L  +LE  +VPE   +N +I  +               M+     P+ FTY  +I+   +
Sbjct: 404 LHSMLEKSMVPEPHIWNLIIDCYGRYGYLSNAISKRDQMLVAGVQPNVFTYNALIHAQVR 463

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
                 AY +  ++   G  PD V Y  +I+G CK G L  A +++ EM+ KG   ++ T
Sbjct: 464 GGNIFSAYSLKKEMLLLGLFPDVVTYNLLINGACKHGQLRFALQLYDEMLRKGYEADKIT 523

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           Y  +I+G+C    ++EA+ L  E+   G     V +  +       G  D A   +
Sbjct: 524 YTELINGHCMCGEMKEAEDLFFELHRSGLPMDIVPFKVIFEKYQKIGEPDMALKFY 579



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/126 (35%), Positives = 65/126 (51%), Gaps = 3/126 (2%)

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD   YT ++  LC  G  G A  +  ++I +G   +  T+N +++G C   ++E A  L
Sbjct: 135 PD---YTVMVRDLCLKGKFGAALLLRRKLIKEGFAVDLVTHNYLLNGLCINCDMEMADSL 191

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +EML+ G      TYN +I G CL    D+A  LF  M   GI    ITYN L+   CK
Sbjct: 192 FREMLEMGPSPNCATYNIIIKGFCLRMNMDKALDLFYTMVNSGIRPSRITYNILLHALCK 251

Query: 422 EGKIVN 427
            G +V+
Sbjct: 252 RGILVD 257


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 160/341 (46%), Gaps = 18/341 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PDLV+ + L     +A   + + + L    S G  P+       +  LC+S  + EA  
Sbjct: 79  TPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEALE 138

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
              ++   G   ++ T+N+ + GC +    ++   L   +  SG          L+   C
Sbjct: 139 LLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLC 198

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G++ E  +LL ++   G  P+  A++  +   C+        ++L  M   +  P+  
Sbjct: 199 KAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVV 258

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           TY  +++GLCKS K   A  +   +    G   + V Y+TV+ GLCK+G   +AR +   
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G  P+  TY+S+++G C+   +EEA    +EM  +G     VTY +L+ GLC  GR
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378

Query: 390 TDEAYHLFEEMAQKGIFRD-----VITYNTLIQGYCKEGKI 425
             EA  + EEM+  G   D     V TYN LI G CK G+I
Sbjct: 379 LAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRI 419



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  F   G+  +   LL  +   G+ P   ++N L+   C+ + +    EL+  M++R 
Sbjct: 16  LVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRG 75

Query: 265 --RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  TY  +++G CK+ K  E+  +  ++  RG  PD +MYT V+  LCK   LG+
Sbjct: 76  GRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGE 135

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  EMI  G  P   T+N++I G CR  NLE A  L + M   G     VTYNTL+ 
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMD 195

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           GLC  GR  EA  L E M   G   DV+ Y++ + G CK GK++N
Sbjct: 196 GLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 147/308 (47%), Gaps = 12/308 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           +D TG  PN  +    +    + G   +       +   G+  ++ ++N  L G  K++R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 189 TDLVWKLYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
                +L  D+I  G            L+  +C  GKV E  ELL++V+  GL P+   +
Sbjct: 61  WHEAEELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
            K+++  C+    G   ELL  M+     P   T+  +I+G C+ +    A  +   +  
Sbjct: 121 TKVMASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAA 180

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G   D V Y T++ GLCK G L +A ++   M   G  P+   Y+S ++G C+   +  
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLN 240

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLI 416
           A ++ ++M D  +    VTYNT++ GLC  G+ D A  + E+MA   G   +V+ Y+T++
Sbjct: 241 AHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 417 QGYCKEGK 424
            G CK G+
Sbjct: 301 DGLCKLGR 308



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 141/311 (45%), Gaps = 15/311 (4%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P   +    I   C    +E A      +   GV   + T+N+ + G  K  R   
Sbjct: 146 AGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQE 205

Query: 192 VWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
             +L   +  SG           +   C  GKV   +++L Q+ +    P    +N ++ 
Sbjct: 206 AEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILD 265

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFT-YEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             C+        E++  M + +    N   Y  V++GLCK  +  EA  V   +   G  
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD V Y+++++GLCK G + +A +   EM  +G  PN  TY S++HG C    L EA+R+
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 362 HKEMLDKGYGE-----TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            +EM   G G      +  TYN LI GLC  GR D+A   F+ M  +G   D ++Y+T++
Sbjct: 386 VEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445

Query: 417 QGYCKEGKIVN 427
           +G  + G+ + 
Sbjct: 446 EGLARSGRALQ 456



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 42/324 (12%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
           ++ N+ ++    Q + +  G   D+V+ N L D L +A   + A   L+   ++G +P+ 
Sbjct: 164 REKNLEMADSLLQTMAAS-GVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDV 222

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +   ++  LC+SG +  A     ++++     ++ T+N+ L G                
Sbjct: 223 VAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDG---------------- 266

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                      C  GK+    E++ Q+   DG       ++ ++   C+    GR  E  
Sbjct: 267 ----------LCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCK---LGRTQEAR 313

Query: 258 HTMVARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
             M A  RA   PD  TY  ++NGLCK+ K  EA     ++   G  P+ V Y +++HGL
Sbjct: 314 SVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGL 373

Query: 315 CKMGWLGDARKMWFEMIHKGLL-----PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           C  G L +A +M  EM   G       P+  TYN++I G C+   +++A +  + M  +G
Sbjct: 374 CSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQG 433

Query: 370 YGETTVTYNTLIAGLCLHGRTDEA 393
                V+Y+T++ GL   GR  +A
Sbjct: 434 CDPDGVSYSTIVEGLARSGRALQA 457


>gi|255553139|ref|XP_002517612.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543244|gb|EEF44776.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 794

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 159/334 (47%), Gaps = 14/334 (4%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V  N L D      +     V    L   GF P   +    I   C+ G  E  
Sbjct: 202 GCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFLPTVKTYGAIINGFCKKGKFEVV 261

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL-----LGCIKIDRTDLV-WKLYH----DLIESGYLIQ 207
                ++ E G+  SI  +N+ +      GC +I+  D V W +      D+     LI 
Sbjct: 262 DKLLVEMSERGLDVSIHIYNNIIDAQFKHGC-RIEAADTVGWMIKSGCDPDMATYNILIT 320

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ G+V +  +LL Q ++ GL+P   ++  LI  +C++  + R  +LL  M  R   P
Sbjct: 321 GSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKP 380

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I+GL  + +   A  V N + E+G +PD  +Y  ++ GLCK G L  A+ + 
Sbjct: 381 DLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLL 440

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ + + P+ +   +++ G+ R  + EEAK+L +  ++KG     V YN +I G C  
Sbjct: 441 AEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKF 500

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G   +A   F+ M Q     D  TY+T+I GY K
Sbjct: 501 GMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIK 534



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 163/382 (42%), Gaps = 47/382 (12%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---------------- 132
           ++ F++     +   PD+ SCN L + LV+    ++A    D                  
Sbjct: 120 ALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTVCIMV 179

Query: 133 ----------------------GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170
                                 G  PN       I   C+ G  E A   F +LK  G  
Sbjct: 180 KGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKMKGFL 239

Query: 171 GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYEL 221
            ++KT+ + + G  K  + ++V KL  ++ E G          +I A    G   E  + 
Sbjct: 240 PTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIEAADT 299

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           +  +++ G  P+   +N LI+  C      +  +LL   + R   P+  +Y  +I+  CK
Sbjct: 300 VGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCK 359

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
             + L A  +   + ERG+ PD V Y  +IHGL   G +  A  +  +M+ KG+LP+   
Sbjct: 360 QGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANI 419

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN ++ G C+   L  AK L  EMLD+          TL+ G   HG  +EA  LFE   
Sbjct: 420 YNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTI 479

Query: 402 QKGIFRDVITYNTLIQGYCKEG 423
           +KGI   V+ YN +I+GYCK G
Sbjct: 480 EKGIDPGVVGYNAMIKGYCKFG 501



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 107/438 (24%), Positives = 188/438 (42%), Gaps = 60/438 (13%)

Query: 43  IAKQVCKITRTKPRWEQTLLS-----DIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWL- 96
           + K    I +T P W+++L +     +IP+ +    +F      Q ++  + + FF W  
Sbjct: 1   MVKDAIYIIKTDPEWQESLETHFLDTEIPASDIACHMF-----DQIHDPEMGLEFFHWAS 55

Query: 97  -HSHYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
             S+ G   +  SC+ L   L   R F   +  +  + S    P   +  L I    + G
Sbjct: 56  KQSNCGNYLNEFSCSSLLRLLARRRLFSEVESLLKIMKSKDLMPTREAFSLVISVFADCG 115

Query: 153 LIEEAFCAFSK-LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------- 203
           L++ A   +   +K       + + NS L   +K  + ++  K+Y ++++          
Sbjct: 116 LVDRALEFYRTFIKIHHCVPDVFSCNSLLNVLVKHGKVEIACKVYDEMVDRNGEVDNYTV 175

Query: 204 -YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +++  C +GKV +G++L+ +    G +P    +N LI  +C+K +  R + L   +  
Sbjct: 176 CIMVKGLCKEGKVEDGWKLIEKRWGRGCMPNIVFYNTLIDGYCKKGDTERANVLFKELKM 235

Query: 263 RNRAPDNFTYEEVINGLCKSRK-----------------------------------RLE 287
           +   P   TY  +ING CK  K                                   R+E
Sbjct: 236 KGFLPTVKTYGAIINGFCKKGKFEVVDKLLVEMSERGLDVSIHIYNNIIDAQFKHGCRIE 295

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A      + + G  PD   Y  +I G C  G +  A ++  + I +GLLPN+ +Y  +IH
Sbjct: 296 AADTVGWMIKSGCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIH 355

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
            YC+      A  L  +M ++G+    VTY  LI GL + G  D A  +  +M +KG+  
Sbjct: 356 NYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLP 415

Query: 408 DVITYNTLIQGYCKEGKI 425
           D   YN L+ G CK+G++
Sbjct: 416 DANIYNVLMSGLCKKGRL 433



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 136/324 (41%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N+L            A   L+     G  PN  S    I   C+ G    A
Sbjct: 307 GCDPDMATYNILITGSCSCGEVHKAEQLLEQAIKRGLLPNKVSYTPLIHNYCKQGEYLRA 366

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                K+ E G                             DL+    LI      G+V  
Sbjct: 367 LDLLIKMSERG--------------------------HKPDLVTYAALIHGLIVAGEVDV 400

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +  +++E G++P+   +N L+S  C+K        LL  M+ +N APD F    +++
Sbjct: 401 ALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVD 460

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  +     EA ++F    E+G  P  V Y  +I G CK G + DA   +  MI     P
Sbjct: 461 GFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCKFGMMKDALLCFKRMIQGLHSP 520

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +E+TY+++I GY ++++L  A R+   M+        VTY  LI G CL G  + A   F
Sbjct: 521 DEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEKTF 580

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
           ++M    +  +V+TY  LI  +CK
Sbjct: 581 KQMLSLRLKPNVVTYTILIGCFCK 604



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/386 (23%), Positives = 150/386 (38%), Gaps = 65/386 (16%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ VS   L  +  +   +  A+D L      G  P+  +    I  L  +G ++ A
Sbjct: 342 GLLPNKVSYTPLIHNYCKQGEYLRALDLLIKMSERGHKPDLVTYAALIHGLIVAGEVDVA 401

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE---------SGYLIQA 208
               +K+ E GV      +N  + G  K  R      L  ++++         +  L+  
Sbjct: 402 LTVRNKMVEKGVLPDANIYNVLMSGLCKKGRLPAAKVLLAEMLDQNVAPDAFITATLVDG 461

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL---HTMVARNR 265
           F   G   E  +L    +E G+ P    +N +I  +C+   FG + + L     M+    
Sbjct: 462 FIRHGDFEEAKKLFELTIEKGIDPGVVGYNAMIKGYCK---FGMMKDALLCFKRMIQGLH 518

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +PD FTY  +I+G  K      A R+F  + +    P+ V YT +I+G C  G +  A K
Sbjct: 519 SPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGACKPNVVTYTLLINGFCLSGDINRAEK 578

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML------------------- 366
            + +M+   L PN  TY  +I  +C+  NL +A    ++ML                   
Sbjct: 579 TFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACSFFEQMLMEKCLPNDVTYNYLMNGLT 638

Query: 367 ----------------------------DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
                                         G+     +YN+++  LC H     A HL +
Sbjct: 639 NNVDFVISNQRSEQTENSLVLESFGMMISDGWDRRAASYNSILICLCQHKMVKHALHLRD 698

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGK 424
           +M  KG   D ++   L+ G C EG+
Sbjct: 699 KMMSKGFLPDPVSLVALLHGLCLEGR 724



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 76/386 (19%), Positives = 146/386 (37%), Gaps = 59/386 (15%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  PDLV+   L   L+ A    VA+     +   G  P+ N   + +  LC+ G +
Sbjct: 374 SERGHKPDLVTYAALIHGLIVAGEVDVALTVRNKMVEKGVLPDANIYNVLMSGLCKKGRL 433

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
             A    +++ +  V        + + G I+    +   KL+   IE G          +
Sbjct: 434 PAAKVLLAEMLDQNVAPDAFITATLVDGFIRHGDFEEAKKLFELTIEKGIDPGVVGYNAM 493

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+ +C  G + +     +++++    P+   ++ +I  + +  +      +   MV    
Sbjct: 494 IKGYCKFGMMKDALLCFKRMIQGLHSPDEFTYSTIIDGYIKMNDLHGALRMFGLMVKGAC 553

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +ING C S     A + F  +      P+ V YT +I   CK   L  A  
Sbjct: 554 KPNVVTYTLLINGFCLSGDINRAEKTFKQMLSLRLKPNVVTYTILIGCFCKGVNLTKACS 613

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGY------------------------------------ 349
            + +M+ +  LPN+ TYN +++G                                     
Sbjct: 614 FFEQMLMEKCLPNDVTYNYLMNGLTNNVDFVISNQRSEQTENSLVLESFGMMISDGWDRR 673

Query: 350 -----------CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
                      C+   ++ A  L  +M+ KG+    V+   L+ GLCL GR+ +  ++  
Sbjct: 674 AASYNSILICLCQHKMVKHALHLRDKMMSKGFLPDPVSLVALLHGLCLEGRSQDWNNVIS 733

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGK 424
               +   +  + Y+  +  +  +G+
Sbjct: 734 CKLNERELQVAVKYSEKLDAFLSQGQ 759


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 11/315 (3%)

Query: 121  AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
            A  + MD + + G +P+  ++   ++   E GLIE A   F ++   GV     ++   +
Sbjct: 767  AVGMVMD-MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMV 825

Query: 181  LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            +GC +  +     +    +I+ G+         ++ A C +G V+      R++++ G  
Sbjct: 826  IGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFK 885

Query: 232  PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            P    F  LI   C+K +  +  E+L  MV     P+ +T+  +I+GLCK     +A+R+
Sbjct: 886  PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRL 945

Query: 292  FNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            F  L +   Y P+   YT++I G CK   L  A  ++  M  +GL PN  TY ++I+G+C
Sbjct: 946  FLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC 1005

Query: 351  RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
            +  +   A  L   M D+G+     TYN  I  LC   R  EAY L  +    G+  D +
Sbjct: 1006 KAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGV 1065

Query: 411  TYNTLIQGYCKEGKI 425
            TY  LIQ  CK+  I
Sbjct: 1066 TYTILIQEQCKQNDI 1080



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 156/348 (44%), Gaps = 17/348 (4%)

Query: 94   QWLHS--HYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
            +WL      GF PD  +C ++  +L E     RA       +D  GF PN  +    I  
Sbjct: 839  RWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID-LGFKPNLINFTSLIDG 897

Query: 148  LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
            LC+ G I++AF    ++   G   ++ T  + + G  K   T+  ++L+  L+ S     
Sbjct: 898  LCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKP 957

Query: 204  ------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                   +I  +C + K++    L  ++ E GL P    +  LI+  C+  +FGR  EL+
Sbjct: 958  NVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELM 1017

Query: 258  HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            + M      P+ +TY   I+ LCK  +  EAY + N     G   D V YT +I   CK 
Sbjct: 1018 NLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQ 1077

Query: 318  GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
              +  A   +  M   G   +    N +I  +CR   ++E++RL + ++  G   T  TY
Sbjct: 1078 NDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETY 1137

Query: 378  NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++I+  C  G  D A   F  M + G   D  TY +LI G CK+  +
Sbjct: 1138 TSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 1185



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 152/340 (44%), Gaps = 13/340 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
            GF P+L++   L D L +  + K A + L+     G+ PN  +    I  LC+ G  E+A
Sbjct: 883  GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 942

Query: 158  FCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
            F  F KL     +  ++ T+ S + G  K D+ +    L+  + E G          LI 
Sbjct: 943  FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 1002

Query: 208  AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
              C  G     YEL+  + ++G +P    +N  I   C+K       ELL+   +     
Sbjct: 1003 GHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEA 1062

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            D  TY  +I   CK     +A   F  + + G+  D  +   +I   C+   + ++ +++
Sbjct: 1063 DGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLF 1122

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              ++  GL+P + TY SMI  YC+  +++ A +    M   G    + TY +LI+GLC  
Sbjct: 1123 QLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKK 1182

Query: 388  GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
               DEA  L+E M  +G+    +T  TL   YCK     N
Sbjct: 1183 SMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSAN 1222



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 153/338 (45%), Gaps = 16/338 (4%)

Query: 101  GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
            G+ P++ +   L D L +     +AF++ +  + S  + PN ++    I   C+   +  
Sbjct: 918  GWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNR 977

Query: 157  AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
            A   FS++KE G+F ++ T+ + + G  K       ++L + + + G++         I 
Sbjct: 978  AEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAID 1037

Query: 208  AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            + C   +  E YELL +    GL  +   +  LI   C++ +  +       M       
Sbjct: 1038 SLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEA 1097

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            D      +I   C+ +K  E+ R+F  +   G +P    YT++I   CK G +  A K +
Sbjct: 1098 DMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYF 1157

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
              M   G +P+ +TY S+I G C+   ++EA +L++ M+D+G     VT  TL    C  
Sbjct: 1158 HNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKR 1217

Query: 388  GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +  A  L E + +K   R   T  TL++  C E K+
Sbjct: 1218 NDSANAMILLEPLDKKLWIR---TVRTLVRKLCSEKKV 1252



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++ F   G+++E   ++  +   GL P +   N ++    E         +   M  R 
Sbjct: 754 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 813

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+ +Y+ ++ G  +  K  EA R    + +RG++PD    T ++  LC+ G +   R
Sbjct: 814 VVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVN--R 871

Query: 325 KMWF--EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
            +W+  +MI  G  PN   + S+I G C+  ++++A  + +EM+  G+     T+  LI 
Sbjct: 872 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 931

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
           GLC  G T++A+ LF ++ +   ++ +V TY ++I GYCKE K+
Sbjct: 932 GLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKL 975


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 168/369 (45%), Gaps = 44/369 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  + + L + L  +     A+DF+      G  P  ++    I  LC+ G IE+A
Sbjct: 293 GCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDA 352

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG----------------------------------- 182
           +  F  +K+ G   ++ T+ S + G                                   
Sbjct: 353 WKIFIDMKKKGCKPNVYTYTSLISGQRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLME 412

Query: 183 CIKIDRTDLVWKLY--HDLIE--SGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
            ++ID   +V+ +   H  +   S Y  LI+ +C  G   +   +L  +L+    P    
Sbjct: 413 NMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVT 472

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N +I  +C+  +      +L  M A    PD ++Y E+I+G CK  K   A  +FN++ 
Sbjct: 473 YNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMM 532

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           +RG  P+ V YT +I G CK   L  A +M   M   G  PN  TYN +IHG  + +N  
Sbjct: 533 DRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFS 592

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A+ L K ML++      VTY+T+I GLC +G    A  +F +M + G   ++ TY++LI
Sbjct: 593 GAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLI 652

Query: 417 QGYCKEGKI 425
           Q   +EG++
Sbjct: 653 QALGQEGRV 661



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 154/369 (41%), Gaps = 44/369 (11%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +   +       R    A +    +D  G  PN  +    I  LC SG + EA
Sbjct: 258 GMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEA 317

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------- 204
               S++   GV  ++ T+ + ++    + R +  WK++ D+ + G              
Sbjct: 318 LDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISG 377

Query: 205 ---------LIQAFCNDGKVSE--GYELLRQVL-----------------EDGLVPENTA 236
                    L      DG V     Y  L  VL                 + G +P  ++
Sbjct: 378 QRVSRMAIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSS 437

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N+LI  +C   +  +   +L  M+     P   TY  +I G C S     A RV   +K
Sbjct: 438 YNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMK 497

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G  PD   YT +I G CK+  +  A  M+ EM+ +GL PNE TY ++I GYC+ + L+
Sbjct: 498 ANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLD 557

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A R+ + M   G      TYN LI GL        A  L + M ++ I  DV+TY+T+I
Sbjct: 558 CAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVI 617

Query: 417 QGYCKEGKI 425
            G C  G I
Sbjct: 618 NGLCNNGAI 626



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 128/267 (47%), Gaps = 16/267 (5%)

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVS 216
           +MG+F    T+ + L+   K++ T  V   YH ++  G          +I A C DG V 
Sbjct: 190 KMGLF----TYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVR 245

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +   ++ +V + G+ P+   +  +I  +C  ++     E+ + M      P+  TY  +I
Sbjct: 246 DAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLI 305

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NGLC S +  EA    +++   G +P    +T  I  LC MG + DA K++ +M  KG  
Sbjct: 306 NGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCK 365

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN YTY S+I G  R+  +  A  L   M   G    TVTYN L+  L  +   D A  +
Sbjct: 366 PNVYTYTSLISGQ-RVSRM--AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIV 422

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           F  M + G   +  +YN LI+GYC  G
Sbjct: 423 FNMMGKHGCLPNTSSYNELIRGYCTIG 449



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 160/359 (44%), Gaps = 13/359 (3%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDST 132
           +   +  Q    ++I  F  + S  G  P+ V+ N L + L+E      A+   + +   
Sbjct: 371 YTSLISGQRVSRMAIGLFHRM-SRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKH 429

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN +S    I+  C  G  E+A    + + +     ++ T+N  + G      TD+ 
Sbjct: 430 GCLPNTSSYNELIRGYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVA 489

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            ++   +  +G          LI  FC   K+     +  ++++ GL P    +  LIS 
Sbjct: 490 IRVLELMKANGCQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISG 549

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+ +     + +L  M      P+  TY  +I+GL K      A  +   + E    PD
Sbjct: 550 YCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPD 609

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y+TVI+GLC  G +  A +M+ +M+  G LPN +TY+S+I    +   +EEA+ +  
Sbjct: 610 VVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFS 669

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           E+  +G     VTY  +I    + G+ D A+    EM   G    + TY+ LI+G   E
Sbjct: 670 ELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGLQNE 728



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 139/302 (46%), Gaps = 12/302 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN       I  LC+ G + +A    +K+ + G+     T+ S +LG  +    D  
Sbjct: 223 GLQPNLLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSA 282

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           +++++ + E G          LI   CN G+V+E  + + ++   G++P    F   I  
Sbjct: 283 FEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVHTFTAPIVA 342

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C+        ++   M  +   P+ +TY  +I+G   SR    A  +F+ +   G VP+
Sbjct: 343 LCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRM---AIGLFHRMSRDGVVPN 399

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
           TV Y  +++ L +   +  A  ++  M   G LPN  +YN +I GYC I + E+A  +  
Sbjct: 400 TVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLT 459

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            ML      T VTYN +I G C  G TD A  + E M   G   D  +Y  LI G+CK  
Sbjct: 460 NMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCKIS 519

Query: 424 KI 425
           K+
Sbjct: 520 KM 521



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 140/302 (46%), Gaps = 9/302 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  PN  +    +  L E+  I+ A   F+ + + G   +  ++N  + G   I  T+  
Sbjct: 395 GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKA 454

Query: 193 WKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             +  ++++            +I+ +C+ G       +L  +  +G  P+  ++ +LIS 
Sbjct: 455 MSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISG 514

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           FC+       S + + M+ R   P+  TY  +I+G CK  K   A R+   +K  G  P+
Sbjct: 515 FCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPN 574

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              Y  +IHGL K      A ++   M+ + + P+  TY+++I+G C    +  A  +  
Sbjct: 575 VQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEMFN 634

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M+  G      TY++LI  L   GR +EA  +F E+ ++G+  D +TY  +I+     G
Sbjct: 635 KMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSG 694

Query: 424 KI 425
           K+
Sbjct: 695 KV 696



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 52/156 (33%), Positives = 80/156 (51%)

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           FTY  ++  L K          ++ +   G  P+ ++Y +VI+ LCK G + DA  +  +
Sbjct: 194 FTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDGNVRDAESIINK 253

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +   G+ P+ +TY SMI GYCR  +L+ A  +   M ++G      TY+TLI GLC  GR
Sbjct: 254 VFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGR 313

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +EA     EM + G+   V T+   I   C  G+I
Sbjct: 314 VNEALDFISEMTRHGVLPTVHTFTAPIVALCDMGRI 349



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 78/348 (22%), Positives = 132/348 (37%), Gaps = 51/348 (14%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + NVL   L +   F  A +    +     SP+  +    I  LC +G I  A
Sbjct: 570 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLA 629

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F+K+ + G   ++ T++S                          LIQA   +G+V E
Sbjct: 630 LEMFNKMVKHGCLPNLHTYSS--------------------------LIQALGQEGRVEE 663

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E+  ++ + GL+P+   + K+I          R  + L  M+     P   TY+ +I 
Sbjct: 664 AEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIK 723

Query: 278 GL--------CKSRKRLEAYRVFND--------------LKERGYVPDTVMYTTVIHGLC 315
           GL          +     +   F+D              L E  +     +Y  ++  L 
Sbjct: 724 GLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLS 783

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           + G   +A  ++  M+ +   PN+ TY   +    R   ++ A  + K M D+       
Sbjct: 784 RSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLT 843

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            Y  LI  LC   R  EA  +FE+M  + +  D I +  LI G    G
Sbjct: 844 GYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGLLGAG 891



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/147 (27%), Positives = 74/147 (50%), Gaps = 1/147 (0%)

Query: 280 CKSRKRL-EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           C ++  + +A    +   +RG       YTT++  L K+         + +++ +GL PN
Sbjct: 168 CSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPN 227

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YNS+I+  C+  N+ +A+ +  ++   G    T TY ++I G C +   D A+ +F 
Sbjct: 228 LLIYNSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFN 287

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
            M ++G   +  TY+TLI G C  G++
Sbjct: 288 RMDEEGCEPNAATYSTLINGLCNSGRV 314



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 63/311 (20%), Positives = 118/311 (37%), Gaps = 95/311 (30%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
            SPD+V+ + + + L    A  +A++  +     G  PN ++    IQ L + G +EEA 
Sbjct: 606 ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAE 665

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
             FS+LK+ G+     T+   +  C+   + D  +    ++I +G          LI+  
Sbjct: 666 EMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725

Query: 210 CND--------------------------------GKVSE-GYELLRQVLEDGLVPENTA 236
            N+                                 K++E  +EL RQ+           
Sbjct: 726 QNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSKLAELDFELSRQL----------- 774

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE----------------------- 273
           ++ L+SR      +   + L  +MV++++ P+  TY+                       
Sbjct: 775 YDALLSRLSRSGRWFEANNLYRSMVSQSQCPNQDTYKHFLISLLRALKVDLAMDVFKHMS 834

Query: 274 ------------EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                       E+I  LC+  +R EA  VF  +  R    D +++T +I+GL   G+  
Sbjct: 835 DQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNADEIVWTILINGLLGAGY-- 892

Query: 322 DARKMWFEMIH 332
             + +  E +H
Sbjct: 893 --KDLCMEFLH 901


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/334 (27%), Positives = 160/334 (47%), Gaps = 13/334 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+CN    SL +    K A +F DS    G  PN  +  + +      G   + 
Sbjct: 327 GLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDM 386

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWK------LYHDLIESGYLIQA 208
              F+ ++  G+    + +N  +    K   +D T L++       +  D    G +I A
Sbjct: 387 LNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAA 446

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-P 267
           F   G++++  +   Q++  GL PE   ++ LI  FC   N  +  EL+  M++R    P
Sbjct: 447 FSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRP 506

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +   +  +IN LCK  + +EA+ +F+ +   G  PD + + ++I G   +G +  A  + 
Sbjct: 507 NIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVL 566

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             MI  G+ P+  +YN++I GYCR   +++   L  EML KG   TT+TY  ++ GL   
Sbjct: 567 DAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFND 626

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           GRT  A  +  EM + G   D+ T   ++ G C+
Sbjct: 627 GRTVGAKKMCHEMIESGTTMDISTCGIILGGLCR 660



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 120/209 (57%), Gaps = 2/209 (0%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVING 278
           LL ++ E G+ P+  ++N ++   CE     R  +LLHTMV ++   +P+  TY  VI+G
Sbjct: 177 LLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHG 236

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           L +  +  +A  +F+++ ++G VPD V YT++I  LCK   +  A  +  +MI  G  PN
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
           + TYN MIHGY      +E   + +EM  +G     VT N+ ++ LC HG++ EA   F+
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFD 356

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            MA KG   +++TY+ L+ GY  EG  V+
Sbjct: 357 SMAAKGHKPNLVTYSVLLHGYATEGCFVD 385



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 21/344 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIE 155
           G  PD +S N +  +L E    + A+D L      S G SPN  +    I  L   G + 
Sbjct: 185 GVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVS 244

Query: 156 EAFCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
           +A   F ++ + GV   + T+ S   AL     +D+ +LV +    +I +G+        
Sbjct: 245 KACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLR---QMISNGFQPNKVTYN 301

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I  +   G+  E   + R++   GL+P     N  +S  C+       +E   +M A+
Sbjct: 302 CMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAK 361

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  +++G       ++   +FN ++  G V D  ++  VI    K G + + 
Sbjct: 362 GHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDET 421

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +G++P+  TY  +I  + R+  L +A     +M+  G     + Y++LI G
Sbjct: 422 MLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQG 481

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKIV 426
            C+HG   +A  L  EM  +GI R +++ +N++I   CKEG++V
Sbjct: 482 FCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVV 525



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 76/341 (22%), Positives = 149/341 (43%), Gaps = 15/341 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEE 156
           G   D++  ++L   L  A+     ++ L       G  P+  S    ++ LCE    + 
Sbjct: 149 GLKMDVIVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQR 208

Query: 157 AFCAFSKL--KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           A      +  K  G   ++ T+N+ + G  +         L+H++++ G          +
Sbjct: 209 ALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSI 268

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I A C    + +   +LRQ++ +G  P    +N +I  +     +   + +   M ++  
Sbjct: 269 IDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGL 328

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  T    ++ LCK  K  EA   F+ +  +G+ P+ V Y+ ++HG    G   D   
Sbjct: 329 MPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLN 388

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M   G++ ++  +N +I  Y +   ++E   +  +M ++G      TY  +IA   
Sbjct: 389 LFNSMEGNGIVADQRVFNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFS 448

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             GR  +A   F +M   G+  + I Y++LIQG+C  G +V
Sbjct: 449 RMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLV 489



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/342 (22%), Positives = 145/342 (42%), Gaps = 19/342 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +  ++  +         AMD  +   + G  P        IQ  C  G + +A
Sbjct: 432 GVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKA 491

Query: 158 FCAFSKLKEMGV-FGSIKTWNSALLGCIK----IDRTDLVWKLYH-----DLIESGYLIQ 207
               S++   G+   +I  +NS +    K    ++  D+   + H     D+I    LI 
Sbjct: 492 KELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLID 551

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARN 264
            +   GK+ + + +L  ++  G+ P+  ++N LI  +C     GR+ +   L   M+++ 
Sbjct: 552 GYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGYCRN---GRIDDGLILFGEMLSKG 608

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   TY  +++GL    + + A ++ +++ E G   D      ++ GLC+     +A 
Sbjct: 609 VKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAI 668

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M+ ++    +  N    N+MI    ++   EEAK L   +   G      TY  +I  L
Sbjct: 669 AMFKKLGAMNVKFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNL 728

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
              G  +EA ++F  M + G        N +I+   ++G+IV
Sbjct: 729 LKEGSVEEADNMFSLMEKSGCAPSSRLLNYIIRVLLEKGEIV 770



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/301 (22%), Positives = 132/301 (43%), Gaps = 13/301 (4%)

Query: 136 PNPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
           P PN +     I  LC+ G + EA   F  +  +G    + T+NS + G   + + +  +
Sbjct: 504 PRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAF 563

Query: 194 KLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-SR 243
            +   +I +G          LI  +C +G++ +G  L  ++L  G+ P    +  ++   
Sbjct: 564 GVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGL 623

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           F + +  G   ++ H M+      D  T   ++ GLC++    EA  +F  L       +
Sbjct: 624 FNDGRTVG-AKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFN 682

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
             +  T+I  + K+    +A++++  +   GL+PN  TY  MI    +  ++EEA  +  
Sbjct: 683 IAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFS 742

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            M   G   ++   N +I  L   G   +A +   ++  K I  +  T + L+  + +EG
Sbjct: 743 LMEKSGCAPSSRLLNYIIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSREG 802

Query: 424 K 424
           K
Sbjct: 803 K 803



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 79/329 (24%), Positives = 134/329 (40%), Gaps = 43/329 (13%)

Query: 29  LSIETKESQQLYTEIAKQVC---KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK---Q 82
           +++  K    +Y  + +  C    + + K    + +   IP  N    +FF   +    +
Sbjct: 464 IAMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNI---VFFNSIINSLCK 520

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFD--SLVEA--RAFKVAMDFLDSTGFSPNP 138
           +  V+ +   F ++  H G  PD+++ N L D   LV    +AF V +D + S G  P+ 
Sbjct: 521 EGRVVEAHDIFDFV-IHIGERPDVITFNSLIDGYGLVGKIEKAFGV-LDAMISAGIEPDV 578

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S    I   C +G I++    F ++   GV  +  T+   L G     RT    K+ H+
Sbjct: 579 VSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 199 LIESGYLIQ-AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           +IESG  +  + C              ++  GL   N          C+ +      +L 
Sbjct: 639 MIESGTTMDISTCG-------------IILGGLCRNN----------CDDEAIAMFKKLG 675

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
              V  N A  N     +I+ + K RKR EA  +F+ +   G VP+   Y  +I  L K 
Sbjct: 676 AMNVKFNIAIIN----TMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKE 731

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           G + +A  M+  M   G  P+    N +I
Sbjct: 732 GSVEEADNMFSLMEKSGCAPSSRLLNYII 760


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 166/355 (46%), Gaps = 13/355 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPN 139
           Q NV  ++     +   + +  D+ +  VL + L +      A+ +L   +   + PN  
Sbjct: 160 QGNVAQAVGLADHMEKMW-YPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERNWKPNVV 218

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                +  LC+ GL+ EA    S++   GV  ++ T+   + G     R      L  ++
Sbjct: 219 VYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEM 278

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           ++ G          L+ AFC +GKV +   ++  ++  G  P+   +N LI  +C +   
Sbjct: 279 MKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKM 338

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                + H MV+R R PD   +  +I+G CK +   +A  +  ++ + G+VPD   +TT+
Sbjct: 339 NEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTL 398

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I G C+ G    A++++  M   G +PN  T   ++ G C+ + L EA  L K M     
Sbjct: 399 IGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNL 458

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               V Y+ L+ G+C  G+ + A+ LF  +  KG+  +V  Y  +I+G CK+G +
Sbjct: 459 DLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSL 513



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 154/334 (46%), Gaps = 13/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P +    +L  ++V  + +  A+  +     S G   +  +L + I CLC   L+   F 
Sbjct: 74  PSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFS 133

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIK------IDRTDLVWKLYH--DLIESGYLIQAFC 210
               + ++G+  ++ T  + + G C++      +   D + K+++  D+   G LI   C
Sbjct: 134 VLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLC 193

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G        LR++ E    P    ++ ++   C+         L   M  +   P+  
Sbjct: 194 KTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLV 253

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I GLC   +  EA  + +++ + G  PD  M   ++   CK G +  A+ +   M
Sbjct: 254 TYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFM 313

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I  G  P+ +TYNS+IH YC  + + EA R+   M+ +G     V + +LI G C     
Sbjct: 314 ILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNI 373

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           ++A HL EEM++ G   DV T+ TLI G+C+ G+
Sbjct: 374 NKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGR 407



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 144/344 (41%), Gaps = 48/344 (13%)

Query: 130 DSTGFSPNPNSLELYIQCLCESGL---IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D T    N   L + ++ LC SG    I+EA   F  +  M    S+K +   L   +++
Sbjct: 30  DDTESHSNGTQLLISMRNLCWSGKLKNIDEALDLFQGMARMKPLPSVKDFTLLLGAIVRL 89

Query: 187 DR----TDLVWKLYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                   LV  ++       D I    +I   C    V+ G+ +L  + + GL P    
Sbjct: 90  KHYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMT 149

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
              LI+  C + N  +   L   M       D +TY  +INGLCK+   L A      ++
Sbjct: 150 LTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGVLINGLCKTGDTLAAVGWLRKME 209

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           ER + P+ V+Y+T++ GLCK G + +A  +  EM  KG+ PN  TY  +I G C     +
Sbjct: 210 ERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWK 269

Query: 357 EAKRLHKEMLDKGY-----------------------------------GETTVTYNTLI 381
           EA  L  EM+  G                                    G    TYN+LI
Sbjct: 270 EAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLI 329

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              CL  + +EA  +F  M  +G   D++ + +LI G+CK+  I
Sbjct: 330 HIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNI 373



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 142/329 (43%), Gaps = 14/329 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+LV+   L   L     +K A   LD     G  P+   L + +   C+ G + +A
Sbjct: 247 GVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQA 306

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL-LGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
                 +   G    + T+NS + + C++ ++ +   +++H ++  G          LI 
Sbjct: 307 KSVIGFMILTGEGPDVFTYNSLIHIYCLQ-NKMNEAMRVFHLMVSRGRLPDIVVFTSLIH 365

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +C D  +++   LL ++ + G VP+   +  LI  FC+        EL   M    + P
Sbjct: 366 GWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVP 425

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  T   +++GLCK     EA  +   +++     + V+Y+ ++ G+C  G L  A +++
Sbjct: 426 NLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELF 485

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +  KGL  N Y Y  MI G C+  +L++A+ L   M + G      TYN  + GL   
Sbjct: 486 SSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTK 545

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
                +      M  KG   D  T   +I
Sbjct: 546 KEIARSIKYLTIMRDKGFSVDAATTEFII 574



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/242 (20%), Positives = 96/242 (39%), Gaps = 13/242 (5%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPN 139
           QN +  ++R F  + S  G  PD+V    L     + +    AM  L+     GF P+  
Sbjct: 335 QNKMNEAMRVFHLMVSR-GRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVA 393

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +    I   C++G    A   F  + + G   +++T    L G  K +       L   +
Sbjct: 394 TWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAM 453

Query: 200 IES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            +S           L+   C+ GK++  +EL   +   GL      +  +I   C++ + 
Sbjct: 454 EKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSL 513

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            +  +LL  M      P+N TY   + GL   ++   + +    ++++G+  D      +
Sbjct: 514 DKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEFI 573

Query: 311 IH 312
           I+
Sbjct: 574 IN 575


>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
           salt-inducible-like protein (GB:AL021637) [Arabidopsis
           thaliana]
          Length = 991

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 163/365 (44%), Gaps = 32/365 (8%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA 125
           P      P   ++ +  Q++ LL+   F +      F     S  +L   L   R F + 
Sbjct: 44  PKSPIGSPTRVQKLIASQSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLI 103

Query: 126 MDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
            D L     S  P + E++   I+   E+ L E+    F K+ E       K  N  L  
Sbjct: 104 DDVLAKHRSSGYPLTGEIFTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRIL-- 161

Query: 183 CIKIDRTDLVWKLYHDLIES--GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                          D++ S  GYL +AF          EL +     G++P   ++N L
Sbjct: 162 ---------------DVLVSHRGYLQKAF----------ELFKSSRLHGVMPNTRSYNLL 196

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           +  FC   +     +L   M+ R+  PD  +Y+ +I G C+  +   A  + +D+  +G+
Sbjct: 197 MQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDMLNKGF 256

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
           VPD + YTT+++ LC+   L +A K+   M  KG  P+   YN+MI G+CR D   +A++
Sbjct: 257 VPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARK 316

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  +ML  G    +V+Y TLI GLC  G  DE     EEM  KG        N L++G+C
Sbjct: 317 VLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMISKGFSPHFSVSNCLVKGFC 376

Query: 421 KEGKI 425
             GK+
Sbjct: 377 SFGKV 381



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 141/321 (43%), Gaps = 32/321 (9%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAF-KVAMDFLDST---GFSPNPNSLELYIQC 147
           F++ L   + F+P     N + D LV  R + + A +   S+   G  PN  S  L +Q 
Sbjct: 142 FYKMLE--FNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQA 199

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
            C +  +  A+  F K+ E  V   + ++                            LIQ
Sbjct: 200 FCLNDDLSIAYQLFGKMLERDVVPDVDSYK--------------------------ILIQ 233

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G+V+   ELL  +L  G VP+  ++  L++  C K       +LL  M  +   P
Sbjct: 234 GFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNP 293

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +I G C+  + ++A +V +D+   G  P++V Y T+I GLC  G   + +K  
Sbjct: 294 DLVHYNTMILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYL 353

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EMI KG  P+    N ++ G+C    +EEA  + + ++  G    + T+  +I  +C  
Sbjct: 354 EEMISKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNE 413

Query: 388 GRTDEAYHLFEEMAQKGIFRD 408
             +++     E+  ++ I  D
Sbjct: 414 DESEKIKLFLEDAVKEEITGD 434



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 97/192 (50%), Gaps = 1/192 (0%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDL 295
           F  LI  + E K   +V    + M+  N  P       +++ L   R  L+ A+ +F   
Sbjct: 122 FTYLIKVYAEAKLPEKVLSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSS 181

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           +  G +P+T  Y  ++   C    L  A +++ +M+ + ++P+  +Y  +I G+CR   +
Sbjct: 182 RLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQV 241

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
             A  L  +ML+KG+    ++Y TL+  LC   +  EAY L   M  KG   D++ YNT+
Sbjct: 242 NGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTM 301

Query: 416 IQGYCKEGKIVN 427
           I G+C+E + ++
Sbjct: 302 ILGFCREDRAMD 313


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/337 (29%), Positives = 157/337 (46%), Gaps = 12/337 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G  P +V  NVL D           +  L   ++ GF P   +    I  L + G +E+ 
Sbjct: 1177 GCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKI 1236

Query: 158  FCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKLY------HDLIESGYLIQA 208
               F ++++ G   +++ +NS   AL  C    +  ++ K         D+I    LI  
Sbjct: 1237 GSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITG 1296

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             C++G V +    LR+ +   L P   ++  LI  FC +      S+LL  M+ R   PD
Sbjct: 1297 LCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPD 1356

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              T+  +I+GL  + K  EA  V   + ER   PD  +Y  +I GLCK   L  A+ +  
Sbjct: 1357 VVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILE 1416

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            EM+ K + P+E+ Y ++I G+ R +NL +A+++ + M  KG     V+ N +I G C  G
Sbjct: 1417 EMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFG 1476

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               EA      M + G   D  TY T+I GY K+G +
Sbjct: 1477 MMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNL 1513



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 164/338 (48%), Gaps = 12/338 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
            GFSP++   N + D+L + R+   AM  L    ++G  P+  +    I  LC  G + +A
Sbjct: 1247 GFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 1306

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLG-CIK---IDRTDLVWKLY-----HDLIESGYLIQA 208
                 +     +  +  ++   + G C++   +  +DL+ ++       D++  G LI  
Sbjct: 1307 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHG 1366

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                GKVSE   +  ++ E  + P+   +N LIS  C+K+       +L  M+ +N  PD
Sbjct: 1367 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPD 1426

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             F Y  +I+G  +S    +A ++F  ++ +G  PD V    +I G C+ G + +A     
Sbjct: 1427 EFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMS 1486

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             M   G +P+E+TY ++I GY +  NL  A R   +M+ +      VTY++LI G C  G
Sbjct: 1487 NMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCKTG 1546

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
             TD A  LF  M  + +  +V+TY  LI    K+ K++
Sbjct: 1547 DTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVL 1584



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 173/393 (44%), Gaps = 25/393 (6%)

Query: 53   TKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVL---LSIRFFQWLHS---HYGF-SPD 105
            T P W ++L + +PS     PL         +++    L++    W  S   H     P 
Sbjct: 986  TNPTWARSLAALLPS-----PLSDAHLAAAVSSLPDPDLAVALLSWSQSPDHHVALQDPT 1040

Query: 106  LVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFS 162
             ++ + L   L  +R F    D L S    G +P    L   +    ++G++ +A     
Sbjct: 1041 PLAHSALLRLLARSRRFDAVDDTLQSMSLAGAAPTRACLGALVAAYADAGMLGKATKMCE 1100

Query: 163  KLKEM-GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI--ESG-------YLIQAFCND 212
            +++E  G    +   N  L   ++  R D   KLY +++  +SG        L++  C +
Sbjct: 1101 RVREQYGSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLE 1160

Query: 213  GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
             +V EG +L+      G +P    +N LI  +C + + GR   LL  M  +   P   TY
Sbjct: 1161 RRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTY 1220

Query: 273  EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
              +IN L K     +   +F ++++RG+ P+  +Y +VI  LCK      A  +  +M  
Sbjct: 1221 GSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFA 1280

Query: 333  KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
             G  P+  T+N++I G C   ++ +A+   +E + +      ++Y  LI G C+ G    
Sbjct: 1281 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMV 1340

Query: 393  AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  L  EM  +G   DV+T+  LI G    GK+
Sbjct: 1341 ASDLLVEMMGRGHTPDVVTFGALIHGLVVAGKV 1373



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/355 (23%), Positives = 151/355 (42%), Gaps = 29/355 (8%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G +PD+V+   L   LV A     A+   + +      P+ N   + I  LC+  ++  A
Sbjct: 1352 GHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAA 1411

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 ++ E  V      + + + G I+ +      K++          D++    +I+ 
Sbjct: 1412 KNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKG 1471

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            +C  G +SE    +  + + G +P+   +  +IS + ++ N       L  M+ R   P+
Sbjct: 1472 YCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPN 1531

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              TY  +ING CK+     A  +F +++     P+ V YT +I  L K   +  A   + 
Sbjct: 1532 VVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFE 1591

Query: 329  EMIHKGLLPNEYTYNSMIHGY-----CRIDNLE-EAKRLH----------KEMLDKGYGE 372
             M+     PN+ T + +++G      C I+++      +H          K + D G   
Sbjct: 1592 TMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFDIGDPR 1651

Query: 373  TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             +  YN +I  LC H    EA      MA+KG   + IT+ +L+ G+C  GK VN
Sbjct: 1652 NS-AYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSVN 1705



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 72/331 (21%), Positives = 124/331 (37%), Gaps = 32/331 (9%)

Query: 104  PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
            PD      L D  + +     A    +F++  G  P+  S    I+  C+ G++ EA   
Sbjct: 1425 PDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILC 1484

Query: 161  FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCN 211
             S ++++G      T+ + + G  K    +   +   D+I+            LI  +C 
Sbjct: 1485 MSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLINGYCK 1544

Query: 212  DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             G       L   +  + L P    +  LI    +K    R      TM+  + +P++ T
Sbjct: 1545 TGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSPNDVT 1604

Query: 272  YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
               ++NGL           V N +            T+ +HG  K   L   +K+ F++ 
Sbjct: 1605 LHYLVNGLTSCTPC-----VINSI---------CCNTSEVHG--KDALLVVFKKLVFDIG 1648

Query: 332  HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                 P    YN++I   CR + L EA      M  KGY    +T+ +L+ G C  G++ 
Sbjct: 1649 D----PRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSV 1704

Query: 392  EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                +     Q+  F  +  Y  L   Y  E
Sbjct: 1705 NWRTILPNEFQQEEFEIIFRYKFLFDQYATE 1735


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 5/267 (1%)

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFCNDGKVSEG 218
           + E G    + T+ + + G     R      L   ++E G+     +I   C  G     
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             LL ++ E  +      +N +I R C+  +      L   M  +   PD  TY  +I+ 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            C+S +  +A ++  D+ ER   PD V ++ +I+ L K G + +A +++ +M+ +G+ P 
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPT 180

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYNSMI G+C+ D L +AKR+   M  K      VT++TLI G C   R D    +F 
Sbjct: 181 TITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFC 240

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EM ++GI  + +TY TLI G+C+ G +
Sbjct: 241 EMHRRGIVANTVTYTTLIHGFCQVGDL 267



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 143/328 (43%), Gaps = 33/328 (10%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   L + L  E R  +    +D +   G  P        I  LC+ G  E A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGT----IINGLCKMGDTESA 60

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               SK++E  +   +  +N+                          +I   C DG    
Sbjct: 61  LNLLSKMEETHIKAHVVIYNA--------------------------IIDRLCKDGHHIH 94

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L  ++ + G+ P+   ++ +I  FC    +    +LL  M+ R   PD  T+  +IN
Sbjct: 95  AQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALIN 154

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L K  K  EA  ++ D+  RG  P T+ Y ++I G CK   L DA++M   M  K   P
Sbjct: 155 ALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSP 214

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  T++++I+GYC+   ++    +  EM  +G    TVTY TLI G C  G  D A  L 
Sbjct: 215 DVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLL 274

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             M   G+  + IT+ +++   C + ++
Sbjct: 275 NVMISSGVAPNYITFQSMLASLCSKKEL 302



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    L+   C +G+V +   L+ +++E+G  P  T  N L    C+  +      LL
Sbjct: 9   DVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGL----CKMGDTESALNLL 64

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M   +       Y  +I+ LCK    + A  +F ++ ++G  PD + Y+ +I   C+ 
Sbjct: 65  SKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRS 124

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA ++  +MI + + P+  T++++I+   +   + EA+ ++ +ML +G   TT+TY
Sbjct: 125 GRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITY 184

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           N++I G C   R ++A  + + MA K    DV+T++TLI GYCK  ++ N
Sbjct: 185 NSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDN 234


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/335 (26%), Positives = 161/335 (48%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  D VS   L + L +    + A+  L   D     PN       I  LC+  L+  A
Sbjct: 164 GFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHA 223

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
               S++    +F  + T+ + + GC+ + R      L++         D+     L+  
Sbjct: 224 SDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDG 283

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +G++ +   +L  +++ G+      +N L+  +   K   + + + +TM  R   PD
Sbjct: 284 LCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPD 343

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +INGLCK++   EA  +F ++  +   P+TV Y ++I GL K G + DA  +  
Sbjct: 344 VQSYSIMINGLCKTKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVN 403

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM ++G   +  TY+S++   C+   +++A  L  ++ D+G      TY  L+ GLC +G
Sbjct: 404 EMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNG 463

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           R  +A  +++++  KG   DV  YN ++ G CKEG
Sbjct: 464 RLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEG 498



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD V+   L   L      + A+ F D   + GF  +  S    I  LC++G    A
Sbjct: 129 GFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAA 188

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDL-----VWKLYHDLIESGYLIQA 208
                K+  + V  ++  +N+ +    K    I  +DL     V +++ D++    LI  
Sbjct: 189 LQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYG 248

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G++ E   L  Q+L   + P+   FN L+   C++    +   +L  M+ +    +
Sbjct: 249 CLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSN 308

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G    ++  +A  VFN +  RG  PD   Y+ +I+GLCK   + +A  ++ 
Sbjct: 309 IVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCKTKMVDEAVNLFK 368

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K + PN  TYNS+I G  +   + +A  L  EM ++G     +TY++L+  LC + 
Sbjct: 369 EMHSKSMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLLDALCKNH 428

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + D+A  L  ++  +GI  ++ TY  L+ G CK G++
Sbjct: 429 QVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRL 465



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/225 (31%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           DL     LI  FC+ G ++  + +L ++ + G  P+      LI   C     G+V E L
Sbjct: 98  DLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLN---GKVREAL 154

Query: 258 H---TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           H    ++A+    D  +Y  +INGLCK+ +   A +V   +      P+ VMY T+I  L
Sbjct: 155 HFHDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSL 214

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK   +  A  +  EMI K + P+  TY ++I+G   +  L+EA  L  +ML K      
Sbjct: 215 CKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDV 274

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            T+N L+ GLC  G   +A ++   M ++G+  +++TYN+L+ GY
Sbjct: 275 YTFNILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGY 319



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 148/316 (46%), Gaps = 18/316 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+   L    +     K A+   +        P+  +  + +  LC+ G +++A   
Sbjct: 237 PDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFNILVDGLCKEGEMKKARNV 296

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            + + + GV  +I T+NS + G   + + +    +++ +   G          +I   C 
Sbjct: 297 LAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYSIMINGLCK 356

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNRAPD 268
              V E   L +++    + P    +N LI    +   +GR+S+   L++ M  R +  D
Sbjct: 357 TKMVDEAVNLFKEMHSKSMAPNTVTYNSLIDGLLK---YGRISDAWDLVNEMHNRGQPAD 413

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++ LCK+ +  +A  +   +K++G  P+   YT ++ GLCK G L DA+ ++ 
Sbjct: 414 VITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQ 473

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ KG   +   YN M++G C+    +EA  L  +M D G     VTY TL+  L  + 
Sbjct: 474 DLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFEND 533

Query: 389 RTDEAYHLFEEMAQKG 404
           + D+A  L  EM  +G
Sbjct: 534 KNDKAVKLLREMIVQG 549



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 99/196 (50%), Gaps = 4/196 (2%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+   FN LI+ FC   +      +L  +      PD  T   +I GLC + K  EA   
Sbjct: 97  PDLFTFNILINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHF 156

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYNSMIHGY 349
            +D+  +G+  D V Y T+I+GLCK G    A ++  ++   GLL  PN   YN++I   
Sbjct: 157 HDDVIAKGFHLDQVSYGTLINGLCKTGETRAALQVLRKI--DGLLVQPNVVMYNTIIDSL 214

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+   +  A  L  EM+ K      VTY TLI G  + GR  EA  LF +M  K I  DV
Sbjct: 215 CKDKLVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDV 274

Query: 410 ITYNTLIQGYCKEGKI 425
            T+N L+ G CKEG++
Sbjct: 275 YTFNILVDGLCKEGEM 290



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/189 (31%), Positives = 91/189 (48%)

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FNK++S   +  +F         M  +   PD FT+  +IN  C       A+ V   + 
Sbjct: 67  FNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILINCFCHLGHLNFAFSVLAKIF 126

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           + G+ PDTV  TT+I GLC  G + +A     ++I KG   ++ +Y ++I+G C+     
Sbjct: 127 KLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHLDQVSYGTLINGLCKTGETR 186

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            A ++ +++         V YNT+I  LC       A  L  EM  K IF DV+TY TLI
Sbjct: 187 AALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIHASDLCSEMIVKRIFPDVVTYTTLI 246

Query: 417 QGYCKEGKI 425
            G    G++
Sbjct: 247 YGCLIVGRL 255



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 81/175 (46%)

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
           VS   H +  RN     F + ++++ L K      A      ++ +   PD   +  +I+
Sbjct: 48  VSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNILIN 107

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C +G L  A  +  ++   G  P+  T  ++I G C    + EA   H +++ KG+  
Sbjct: 108 CFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKGFHL 167

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             V+Y TLI GLC  G T  A  +  ++    +  +V+ YNT+I   CK+  +++
Sbjct: 168 DQVSYGTLINGLCKTGETRAALQVLRKIDGLLVQPNVVMYNTIIDSLCKDKLVIH 222



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/190 (21%), Positives = 84/190 (44%), Gaps = 13/190 (6%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---I 145
           ++  F+ +HS    +P+ V+ N L D L++      A D ++       P  +  Y   +
Sbjct: 363 AVNLFKEMHSK-SMAPNTVTYNSLIDGLLKYGRISDAWDLVNEMHNRGQPADVITYSSLL 421

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
             LC++  +++A    +K+K+ G+  +I T+   + G  K  R      +Y DL+  GY 
Sbjct: 422 DALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKNGRLKDAQAVYQDLLIKGYH 481

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   ++   C +G   E   L+ ++ ++G +P+   +  L+    E     +  +L
Sbjct: 482 LDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTYETLVRALFENDKNDKAVKL 541

Query: 257 LHTMVARNRA 266
           L  M+ +  A
Sbjct: 542 LREMIVQGSA 551


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 153/338 (45%), Gaps = 45/338 (13%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L   G  PN  +    I+ LC+ G I++AF    ++   G   ++ T  S + G  K   
Sbjct: 266 LVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGLCKKGW 325

Query: 189 TDLVWKLYHDLIES----------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           T+  ++L+  L+ S            +I  +C + K++    LL ++ E GLVP    + 
Sbjct: 326 TEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYT 385

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV------- 291
            LI   C+  NF R  +L++ M +   +P+  TY  ++NGLCK  +  EAY++       
Sbjct: 386 TLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQN 445

Query: 292 ----------------------------FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
                                       FN + + G  PD   YTT+I   C+   + ++
Sbjct: 446 GLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCRENRMKES 505

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
              + E +  G++P   TY SMI GYCR  NL  A +    + D G    ++TY  +I+G
Sbjct: 506 EMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYGAIISG 565

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           LC   + DEA  L++ M +KG+    +T  TL   YCK
Sbjct: 566 LCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 155/327 (47%), Gaps = 13/327 (3%)

Query: 112 LFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           + +S  E    K A++    + + G  PN  +L   I+   E GL+E A   F ++   G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGY 219
           V     ++   ++   KI       K    ++E G+         +I  F   G  +   
Sbjct: 201 VQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKGYTTRAL 260

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
              R++++ GL P    F  +I   C++ +  +  E+L  MV +   P+ +T+  +I+GL
Sbjct: 261 WYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSLIDGL 320

Query: 280 CKSRKRLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           CK     +A+R+F  L +   + P+ + YT +I G C+   L  A  +   M  +GL+PN
Sbjct: 321 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPN 380

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TY ++I G+C+  N E A  L   M  +G+     TYN ++ GLC  GR  EAY + E
Sbjct: 381 TNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLE 440

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  Q G+  D  TYN L+  +CK+  I
Sbjct: 441 DGFQNGLKPDKFTYNILMSEHCKQENI 467



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 155/341 (45%), Gaps = 19/341 (5%)

Query: 101 GFSPDLVSCNVL------FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD +S  V+        +++EA  +   +  +   GF  +  +  L I      G  
Sbjct: 200 GVQPDSISYRVMVVMYCKIGNILEADKW---LSVMLERGFVVDNATFTLIISRFSGKGYT 256

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
             A   F +L +MG+  ++  +   + G  K       +++  +++  G+         L
Sbjct: 257 TRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHTSL 316

Query: 206 IQAFCNDGKVSEGYEL-LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           I   C  G   + + L L+ V  +   P    +  +IS +C +    R   LL  M  + 
Sbjct: 317 IDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQG 376

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +I+G CK+     AY + N +   G+ P+   Y  +++GLCK G + +A 
Sbjct: 377 LVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAY 436

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           KM  +    GL P+++TYN ++  +C+ +N+ +A  L  +ML  G      +Y TLIA  
Sbjct: 437 KMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVF 496

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C   R  E+   FEE  + GI     TY ++I GYC+EG +
Sbjct: 497 CRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNL 537



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 98/224 (43%), Gaps = 29/224 (12%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESG 152
           L S  GFSP+L + N + + L +    + A   L+     G  P+  +  + +   C+  
Sbjct: 406 LMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQE 465

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
            I +A   F+K+ ++G+   I ++ +                          LI  FC +
Sbjct: 466 NIRQALALFNKMLKIGIQPDIHSYTT--------------------------LIAVFCRE 499

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
            ++ E      + +  G++P N  +  +I  +C + N     +  H +     APD+ TY
Sbjct: 500 NRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITY 559

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
             +I+GLCK  KR EA  +++ + E+G VP  V   T+ +  CK
Sbjct: 560 GAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+  +  +  L+EA  +  EM ++G    T T N +I      G  + A  LFEEM  +G
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVRG 200

Query: 405 IFRDVITYNTLIQGYCKEGKIV 426
           +  D I+Y  ++  YCK G I+
Sbjct: 201 VQPDSISYRVMVVMYCKIGNIL 222


>gi|414882142|tpg|DAA59273.1| TPA: hypothetical protein ZEAMMB73_713491 [Zea mays]
          Length = 987

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 101/329 (30%), Positives = 153/329 (46%), Gaps = 13/329 (3%)

Query: 108 SCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           S  +L   L EAR  + A+     +   G S N ++  L I+ LC+ G I +A     ++
Sbjct: 251 SYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLCKEGRIHDARGLLDEM 310

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKV 215
              GV  S+ T+N+ + G  K  R      +   + ++G          LI   C  GK+
Sbjct: 311 PLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDWTYNSLIYGLCG-GKL 369

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E  ELL   +  G  P    F  LI+ +C+ +       +   M++ N   D   Y  +
Sbjct: 370 DEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNMISSNCKLDLQAYGVL 429

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           IN L K  +  EA    N++   G  P+ V YT++I G CK+G +G A +++  M H+G 
Sbjct: 430 INVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGC 489

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            PN +TY S+I+G  +   L +A  L  +M + G     +TY TLI G C     D A+ 
Sbjct: 490 HPNAWTYGSLIYGLIQDKKLHKAMALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFR 549

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LFE M Q G+  D   YN L    CK G+
Sbjct: 550 LFEMMEQNGLTPDEQAYNVLTDALCKSGR 578



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 143/333 (42%), Gaps = 15/333 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   + D   +      A++    ++  G  PN  +    I  L +   + +A
Sbjct: 453 GLAPNVVTYTSIIDGYCKVGMVGAALEVFKLMEHEGCHPNAWTYGSLIYGLIQDKKLHKA 512

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               +K++E G+   + T+ + + G  K    D  ++L+  + ++G          L  A
Sbjct: 513 MALITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDA 572

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+  E Y  L   +  G+V     +  L+  F +  N    + L+  MV      D
Sbjct: 573 LCKSGRAEEAYSFL---VRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKAD 629

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  ++  LCK +K  EA  + + +   G   + V YT +I  + K G    A+ ++ 
Sbjct: 630 LYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFN 689

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EMI  G  P+  TY   I  YC+I  +EEA+ L  EM   G     VTYN  I G    G
Sbjct: 690 EMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGEMERDGVTPDVVTYNIFINGCGHMG 749

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             D A+   + M       +  TY  L++ + K
Sbjct: 750 YIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLK 782



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 135/324 (41%), Gaps = 32/324 (9%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           DL +  VL + L++    K A + L+   + G +PN  +    I   C+ G++  A   F
Sbjct: 422 DLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMVGAALEVF 481

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
             ++  G   +  T+ S + G I+                          D K+ +   L
Sbjct: 482 KLMEHEGCHPNAWTYGSLIYGLIQ--------------------------DKKLHKAMAL 515

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           + ++ EDG+ P    +  LI   C+K  F     L   M      PD   Y  + + LCK
Sbjct: 516 ITKMQEDGITPGVITYTTLIQGQCKKHEFDNAFRLFEMMEQNGLTPDEQAYNVLTDALCK 575

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
           S +  EAY     L  +G V   V YT+++ G  K G    A  +  +M+++G   + YT
Sbjct: 576 SGRAEEAYSF---LVRKGVVLTKVTYTSLVDGFSKAGNTDFAAVLIEKMVNEGCKADLYT 632

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           Y+ ++   C+   L EA  +  +M   G     V Y  +I+ +   G+ D A  LF EM 
Sbjct: 633 YSVLLQALCKQKKLNEALSILDQMTVSGVKCNIVAYTIIISEMIKEGKHDHAKSLFNEMI 692

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
             G      TY   I  YCK G+I
Sbjct: 693 SSGHKPSATTYTVFISSYCKIGRI 716



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/420 (23%), Positives = 161/420 (38%), Gaps = 97/420 (23%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLEL-YIQC 147
           ++ FF+ +    GF     S   L   L   RA               N + L L  I C
Sbjct: 69  ALAFFECVARRPGFRHTAASHAALLQLLARRRA-------------PANYDKLVLSMISC 115

Query: 148 LCESGLIEEAFCAFSKLKEMG---VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
              +  + EA  A   ++ +G   +  S K +N AL   ++ D T+ + KLY  L++ G 
Sbjct: 116 SGTAEDVREAVDAIQAIRRVGGKRLVLSPKCYNLALRSLLRFDMTEYMGKLYSHLVQEGL 175

Query: 205 L---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
           L         I A+C  G ++  +     + E G+  +    N L+  +C   +  +   
Sbjct: 176 LPDTVTYNTMIMAYCKKGSLAIAHRYFCLLRESGMQMDTYTCNALLLGYCRTSDLRKACW 235

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY-------------------------- 289
           LL  M       + ++Y  +I GLC++R   EA                           
Sbjct: 236 LLMMMPLMGCRRNEYSYTILIQGLCEARCVREALVLVFMMVHDGCSLNLHTYTLLIKGLC 295

Query: 290 ---------RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
                     + +++  RG VP    Y  +I G CK G + DA  +   M   G  P+++
Sbjct: 296 KEGRIHDARGLLDEMPLRGVVPSVWTYNAMIDGYCKSGRMKDALGIKALMEQNGCNPDDW 355

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL---- 396
           TYNS+I+G C    L+EA+ L    + +G+  T +T+  LI G C   R D+A  +    
Sbjct: 356 TYNSLIYGLCG-GKLDEAEELLNGAIARGFTPTVITFTNLINGYCKAERIDDALRVKSNM 414

Query: 397 -------------------------------FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                                            EM   G+  +V+TY ++I GYCK G +
Sbjct: 415 ISSNCKLDLQAYGVLINVLIKKCRLKEAKETLNEMFANGLAPNVVTYTSIIDGYCKVGMV 474



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 160/397 (40%), Gaps = 61/397 (15%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG--------------F 134
           + R F+ +  + G +PD  + NVL D+L ++   + A  FL   G              F
Sbjct: 547 AFRLFEMMEQN-GLTPDEQAYNVLTDALCKSGRAEEAYSFLVRKGVVLTKVTYTSLVDGF 605

Query: 135 SPNPNS----------------LELY-----IQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           S   N+                 +LY     +Q LC+   + EA     ++   GV  +I
Sbjct: 606 SKAGNTDFAAVLIEKMVNEGCKADLYTYSVLLQALCKQKKLNEALSILDQMTVSGVKCNI 665

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQ 224
             +   +   IK  + D    L++++I SG+          I ++C  G++ E   L+ +
Sbjct: 666 VAYTIIISEMIKEGKHDHAKSLFNEMISSGHKPSATTYTVFISSYCKIGRIEEAEHLIGE 725

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY---------EEV 275
           +  DG+ P+   +N  I+         R    L  MV  +  P+ +TY           +
Sbjct: 726 MERDGVTPDVVTYNIFINGCGHMGYIDRAFSTLKRMVDASCEPNCWTYWLLLKHFLKMSL 785

Query: 276 IN-------GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           IN       G+    +    +++   + + G  P  V Y+++I G CK   L +A  +  
Sbjct: 786 INAHYVDTSGMWNWIELNMVWQLLERMMKHGLNPTVVTYSSIIAGFCKATRLEEACVLLD 845

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K + PNE  Y  +I   C I    +A     +M++ G+     +Y+ LI GLC  G
Sbjct: 846 HMLGKDISPNEEIYTMLIKCCCDIKLFGKAVSFVTDMIEFGFQPQLESYHYLIVGLCDEG 905

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  LF ++       + + +  L  G  K G +
Sbjct: 906 DYDRAKSLFCDLLGMDYNHNEVAWKILNDGLLKAGHV 942


>gi|46091161|dbj|BAD13709.1| PPR protein [Oryza sativa Indica Group]
          Length = 332

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 152/313 (48%), Gaps = 29/313 (9%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
            SP++V+ N +  +L +A+    AM+ L +   +G  P+  +    +   C SG  +EA 
Sbjct: 43  ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 102

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               K++  GV   + T+NS                          L+   C +G+ +E 
Sbjct: 103 VFLKKMRSDGVEPDVVTYNS--------------------------LMDYLCKNGRCTEA 136

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++   + + GL P+ T +  L+  +  K     +  LL  MV     P+++ +  ++  
Sbjct: 137 RKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 196

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             K  K  EA  VF+ ++++G  P+ V Y TVI  LCK G + DA   + +MI +GL P+
Sbjct: 197 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPD 256

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YNS+IH  C  D  E+A+ L  EMLD+G   +T+ +N++I   C  GR  E+  LF+
Sbjct: 257 SIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESVKLFD 316

Query: 399 EMAQKGIFRDVIT 411
            M + G+  D+IT
Sbjct: 317 LMVRIGVKPDIIT 329



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 126/257 (49%), Gaps = 9/257 (3%)

Query: 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLR 223
           + ++++ + G  K    D  +  Y+++++            +I A C    V +  E+L 
Sbjct: 12  VVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTVDKAMEVLT 71

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
            +++ G++P+   +N ++  FC           L  M +    PD  TY  +++ LCK+ 
Sbjct: 72  TMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNG 131

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +  EA ++F+ + +RG  PD   Y T++ G    G L +   +   M+  G+ PN Y ++
Sbjct: 132 RCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 191

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
            ++  Y + + +EEA  +  +M  +G     VTY T+I  LC  GR ++A   FE+M  +
Sbjct: 192 ILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDE 251

Query: 404 GIFRDVITYNTLIQGYC 420
           G+  D I YN+LI   C
Sbjct: 252 GLRPDSIVYNSLIHSLC 268



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 148/306 (48%), Gaps = 9/306 (2%)

Query: 130 DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189
           D     P+  S    I    + G +++ +  ++++ +  +  ++ T+NS +    K    
Sbjct: 4   DGGDCPPDVVSYSTVINGFFKEGDLDKTYSTYNEMLDKRISPNVVTYNSIIAALCKAQTV 63

Query: 190 DLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           D   ++   +++SG +         +  FC+ G+  E    L+++  DG+ P+   +N L
Sbjct: 64  DKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSL 123

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           +   C+        ++  +M  R   PD  TY  ++ G       +E + + + +   G 
Sbjct: 124 MDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGI 183

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+  +++ ++    K   + +A  ++ +M  +GL PN  TY ++I   C+   +E+A  
Sbjct: 184 HPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAML 243

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
             ++M+D+G    ++ YN+LI  LC+  + ++A  LF EM  +GI    I +N++I  +C
Sbjct: 244 YFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHC 303

Query: 421 KEGKIV 426
           KEG+++
Sbjct: 304 KEGRVI 309


>gi|15238562|ref|NP_200798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171023|sp|Q9FJE6.1|PP437_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59900
 gi|9757911|dbj|BAB08358.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009866|gb|AED97249.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 907

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/337 (27%), Positives = 162/337 (48%), Gaps = 14/337 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAF 158
             PD+V+   L   L + + F++ ++ +D      FSP+  ++   ++ L + G IEEA 
Sbjct: 293 LKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEAL 352

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIK----------IDRTDLVWKLYHDLIESGYLIQA 208
               ++ + GV  ++  +N+ +    K           DR   +    +D+  S  LI  
Sbjct: 353 NLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYS-ILIDM 411

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+      L ++++ GL      +N LI+  C+  +       +  M+ +   P 
Sbjct: 412 FCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPT 471

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G C   K  +A R+++++  +G  P    +TT++ GL + G + DA K++ 
Sbjct: 472 VVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFN 531

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM    + PN  TYN MI GYC   ++ +A    KEM +KG    T +Y  LI GLCL G
Sbjct: 532 EMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTG 591

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +  EA    + + +     + I Y  L+ G+C+EGK+
Sbjct: 592 QASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKL 628



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 162/374 (43%), Gaps = 51/374 (13%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG---FSPNPNSLELYIQCLCESGLIEEA 157
           G +P + +   L   L  A   + A+   +        PN  +  + I+  CE G + +A
Sbjct: 502 GIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKA 561

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIESGY----------LI 206
           F    ++ E G+     ++   + G C+    ++   K++ D +  G           L+
Sbjct: 562 FEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASE--AKVFVDGLHKGNCELNEICYTGLL 619

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC +GK+ E   + +++++ G+  +   +  LI    + K+      LL  M  R   
Sbjct: 620 HGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLK 679

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD+  Y  +I+   K+    EA+ +++ +   G VP+ V YT VI+GLCK G++ +A  +
Sbjct: 680 PDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVL 739

Query: 327 WFEM-----------------------------------IHKGLLPNEYTYNSMIHGYCR 351
             +M                                   I KGLL N  TYN +I G+CR
Sbjct: 740 CSKMQPVSSVPNQVTYGCFLDILTKGEVDMQKAVELHNAILKGLLANTATYNMLIRGFCR 799

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
              +EEA  L   M+  G     +TY T+I  LC      +A  L+  M +KGI  D + 
Sbjct: 800 QGRIEEASELITRMIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIRPDRVA 859

Query: 412 YNTLIQGYCKEGKI 425
           YNTLI G C  G++
Sbjct: 860 YNTLIHGCCVAGEM 873



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 104/454 (22%), Positives = 190/454 (41%), Gaps = 33/454 (7%)

Query: 3   RAPFSVLTILRQNPRN-FQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTL 61
           + P ++ +I   + RN F+N ++ + +   E + ++    +    V +I R K  WE  L
Sbjct: 2   KLPCTIRSITSSHFRNSFRNVSSVIDSAQEECRIAED--KQFVDAVKRIVRGKRSWEIAL 59

Query: 62  LSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARA 121
            S++ S            +   ++  L +RFF +L  H GF     S  +L  +LV+A  
Sbjct: 60  SSELVSRRLKTVHVEEILIGTIDDPKLGLRFFNFLGLHRGFDHSTASFCILIHALVKANL 119

Query: 122 FKVAMDFLDSTGFSPNPNS--------------------LELYIQCLCESGLIEEAFCAF 161
           F  A   L +        S                     +L IQ    S  + +    F
Sbjct: 120 FWPASSLLQTLLLRALKPSDVFNVLFSCYEKCKLSSSSSFDLLIQHYVRSRRVLDGVLVF 179

Query: 162 SKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             +  ++ +   ++T ++ L G +K     L  +L++D++  G          +I++ C 
Sbjct: 180 KMMITKVSLLPEVRTLSALLHGLVKFRHFGLAMELFNDMVSVGIRPDVYIYTGVIRSLCE 239

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +S   E++  +   G       +N LI   C+K+       +   +  ++  PD  T
Sbjct: 240 LKDLSRAKEMIAHMEATGCDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKDLKPDVVT 299

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  ++ GLCK ++      + +++    + P     ++++ GL K G + +A  +   ++
Sbjct: 300 YCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSSLVEGLRKRGKIEEALNLVKRVV 359

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ PN + YN++I   C+     EA+ L   M   G     VTY+ LI   C  G+ D
Sbjct: 360 DFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLD 419

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A     EM   G+   V  YN+LI G+CK G I
Sbjct: 420 TALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDI 453



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 158/372 (42%), Gaps = 49/372 (13%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G SP+L   N L DSL + R F  A    D +   G  PN  +  + I   C  G ++ 
Sbjct: 361 FGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKIGLRPNDVTYSILIDMFCRRGKLDT 420

Query: 157 AFCAFSKLKEMGV----------------FGSIK-------------------TWNSALL 181
           A     ++ + G+                FG I                    T+ S + 
Sbjct: 421 ALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMINKKLEPTVVTYTSLMG 480

Query: 182 GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G     + +   +LYH++   G          L+      G + +  +L  ++ E  + P
Sbjct: 481 GYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSGLFRAGLIRDAVKLFNEMAEWNVKP 540

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +N +I  +CE+ +  +  E L  M  +   PD ++Y  +I+GLC + +  EA +VF
Sbjct: 541 NRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPDTYSYRPLIHGLCLTGQASEA-KVF 599

Query: 293 NDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            D   +G    + + YT ++HG C+ G L +A  +  EM+ +G+  +   Y  +I G  +
Sbjct: 600 VDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQEMVQRGVDLDLVCYGVLIDGSLK 659

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
             + +    L KEM D+G     V Y ++I      G   EA+ +++ M  +G   + +T
Sbjct: 660 HKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVT 719

Query: 412 YNTLIQGYCKEG 423
           Y  +I G CK G
Sbjct: 720 YTAVINGLCKAG 731


>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
 gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Cucumis sativus]
          Length = 535

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/340 (28%), Positives = 174/340 (51%), Gaps = 18/340 (5%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFK-VAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           +G    + S N L ++LV+   F  V + F  S    G  PN  +  + I+ LC+   +E
Sbjct: 150 FGVRRSVRSLNTLLNALVQNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVE 209

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW--KLYHDLIESGYLIQA----- 208
            A   F ++  MG+  ++ T+ + L G   + R D++   +++ +L + G+L  A     
Sbjct: 210 GARKVFDEMPSMGIVPNVVTYTTILGG--YVSRGDMIGAKRVFGELFDHGWLPDATTYTI 267

Query: 209 ----FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
               +   G+ ++  +++ ++ E+G+ P +  +  +I  +C+++  G    LL+ M+ + 
Sbjct: 268 LMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKK 327

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P++    +VI+ LC   +  EA +++  L ++   PD  + +T+IH LCK G + +AR
Sbjct: 328 YIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEAR 387

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           K+ F    +G + +  TYN++I G C +  L EA RL  +ML+KG      TYN LI G 
Sbjct: 388 KL-FNEFERGTISSLLTYNTLIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGF 446

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              G+  E   + EEM  KG   +  TY  L++G  K GK
Sbjct: 447 LKVGKAKEVIKVVEEMLDKGCLLNESTYLILVEGLLKLGK 486



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 160/335 (47%), Gaps = 14/335 (4%)

Query: 83  QNNVLLSIRF-FQWLHSHYGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNP 138
           QNN   S+   F++  S +G  P++ +CN+L  +L    +    +   D + S G  PN 
Sbjct: 168 QNNRFSSVHLLFKYSKSKFGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNV 227

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    +      G +  A   F +L + G      T+   + G +K  R     K+  +
Sbjct: 228 VTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDE 287

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           + E+G          +I  +C + K  E   LL  +LE   +P +    K+I   C +  
Sbjct: 288 MEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGR 347

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                ++   ++ +N  PDN     +I+ LCK     EA ++FN+  ERG +   + Y T
Sbjct: 348 VKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNIWEARKLFNEF-ERGTISSLLTYNT 406

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           +I G+C+MG L +A ++W +M+ KG +PNE+TYN +I G+ ++   +E  ++ +EMLDKG
Sbjct: 407 LIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKG 466

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
                 TY  L+ GL   G+ +E  ++   +   G
Sbjct: 467 CLLNESTYLILVEGLLKLGKREELLNILSMIISSG 501



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 154/351 (43%), Gaps = 29/351 (8%)

Query: 79  FLKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN 137
            +++Q N+ L+++ F +    H  F+ +  + + +   L  ARAF+     L     S  
Sbjct: 58  MIRRQQNLDLALQIFHYAGKYHPAFTHNYDTYHAIIYRLSRARAFEPVESLLLELQDSGI 117

Query: 138 PNSLELYIQCLCESGLIEE---AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
             S +L+I  +   GL      A   F +++  GV  S+++ N+ L   ++ +R   V  
Sbjct: 118 NCSEDLFITVIRSYGLASRPKMALKTFLRIQTFGVRRSVRSLNTLLNALVQNNRFSSVHL 177

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           L+       Y    F                   G+VP     N LI   C+K +     
Sbjct: 178 LFK------YSKSKF-------------------GVVPNVFTCNILIKALCKKNDVEGAR 212

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           ++   M +    P+  TY  ++ G       + A RVF +L + G++PD   YT ++ G 
Sbjct: 213 KVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGAKRVFGELFDHGWLPDATTYTILMDGY 272

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            K G   DA K+  EM   G+ PN+ TY  +I GYC+     EA  L  +ML+K Y   +
Sbjct: 273 VKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKERKSGEALNLLNDMLEKKYIPNS 332

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                +I  LC  GR  EA  ++E++ +K    D    +TLI   CKEG I
Sbjct: 333 ALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAITSTLIHWLCKEGNI 383



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%)

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G++PN +T N +I   C+ +++E A+++  EM   G     VTY T++ G    G    A
Sbjct: 187 GVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIGA 246

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             +F E+   G   D  TY  L+ GY K+G+  +
Sbjct: 247 KRVFGELFDHGWLPDATTYTILMDGYVKQGRFTD 280


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 174/373 (46%), Gaps = 47/373 (12%)

Query: 101 GFSPDLVSCNVLFDSLVE-ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L SCN L  +LV+   AFK  + +  + + G  P+  S  + +   C+ G ++EA
Sbjct: 216 GRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRVDEA 275

Query: 158 F-------------------------------CAFSK----LKEMGVFGSIKTWNSALLG 182
           F                               C   K    + E G+  + +T+   + G
Sbjct: 276 FNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKG 335

Query: 183 CIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
             K  + +   KL   ++E          G LI A+C  G+V +   +   +L+ GL   
Sbjct: 336 YCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMN 395

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
               N LI+ +C+  +  + +E+L +M   N  PD++ Y  +++G CK    ++A+++ +
Sbjct: 396 TVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCD 455

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++  +G     V Y T++  L  +G +  A  +W  M  +G+ PNE TY +++  + ++ 
Sbjct: 456 EMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVG 515

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
             + A  + K+ L KG+ ++   YNT+I G C   +  +A  +F +M + G   D ITY 
Sbjct: 516 TFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYR 575

Query: 414 TLIQGYCKEGKIV 426
           TLI GYCK G +V
Sbjct: 576 TLIDGYCKVGNLV 588



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 166/360 (46%), Gaps = 55/360 (15%)

Query: 113 FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM----G 168
            + LV+A+   + M  L   GF P+  +    I   C+ G + EA     KLK+M    G
Sbjct: 549 MEKLVQAQEIFLKMKEL---GFPPDEITYRTLIDGYCKVGNLVEAL----KLKDMSERDG 601

Query: 169 VFGSIKTWNSALLGCIKIDRTDLV---------WKLYHDLIESGYLIQAFCNDGKVSEGY 219
           +  S + +NS + G  + +    +          +L  +++  G LI  +C+ G + + Y
Sbjct: 602 ISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAY 661

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP------------ 267
               ++++ G+ P     +K++S           + +LH +   +               
Sbjct: 662 NAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSD 721

Query: 268 -----------------------DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
                                  +N  Y   I GLCKS+   +  R+ +DL  +G+ PD 
Sbjct: 722 LRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDN 781

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y ++IH    +G + +A  +  +MI+ GL+PN   YN++I+G C+  NL+ A+RL  +
Sbjct: 782 YTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRARRLFNK 841

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +  KG   T VTYNTLI G C  GRT EA  L ++M ++GI    ITY+TLI G   EGK
Sbjct: 842 LARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGK 901



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 148/280 (52%), Gaps = 9/280 (3%)

Query: 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTD 190
            SPN  +    I   C+ G++++A+ A+ K+ + G+  +I   +   S+L    KID  +
Sbjct: 637 LSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEAN 696

Query: 191 LVWKLYHDL---IESGYLIQAFCNDGKVSEGYELLRQVLEDGL---VPENTAFNKLISRF 244
           L+     D+       + ++   +D +  E  +++    +  +   +  N  +N  I+  
Sbjct: 697 LILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGL 756

Query: 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
           C+ KN   V  +L  ++ +   PDN+TY  +I+      K  EA+ + +D+   G VP+ 
Sbjct: 757 CKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNI 816

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
           V+Y  +I+GLCK G L  AR+++ ++  KGL P   TYN++I GYC+     EA  L  +
Sbjct: 817 VVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDK 876

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M ++G   +++TY+TLI GL + G+++++  L  EM + G
Sbjct: 877 MREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAG 916



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 168/390 (43%), Gaps = 31/390 (7%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SF+F++ L        + N   S+ FF+       F PD+ S   +   L  AR +K   
Sbjct: 93  SFSFSNELMDLVLRNLRLNPDASLEFFKLASKQPKFRPDVSSYCKIVHILSRARMYKEVR 152

Query: 127 DFLDST----------------------GFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
            +L+                         FS +P   ++ ++   E G+ + A C F  +
Sbjct: 153 VYLNELVVLCKNNYIASAVWDELVSVYREFSFSPTVFDMILKVFAEKGMTKFALCVFDNM 212

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKV 215
            + G   S+++ NS L   ++         +Y  +I  G L         + A+C +G+V
Sbjct: 213 GKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMVNAYCKEGRV 272

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E +  ++++      P    +N LI  +    +     ++L  M  +    ++ TY  +
Sbjct: 273 DEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLL 332

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I G CK  +  +A ++   + E+    D  +Y  +IH  C  G + DA ++   M+  GL
Sbjct: 333 IKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGL 392

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
             N    NS+I+GYC++ ++ +A  +   M D      +  YNTL+ G C      +A+ 
Sbjct: 393 KMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFK 452

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L +EM  KG+   V+TYNTL++     G +
Sbjct: 453 LCDEMHNKGVNFTVVTYNTLLKNLFHVGHV 482



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/404 (23%), Positives = 163/404 (40%), Gaps = 82/404 (20%)

Query: 104 PDLVSCNVLFD---SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+ N L D   SL +    K  +  +   G   N  +  L I+  C+ G +E+A   
Sbjct: 289 PNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKL 348

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
              + E  +F     +   +       R D   ++   +++ G          LI  +C 
Sbjct: 349 IGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCK 408

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF--------------------- 250
            G V++  E+L  + +  L P++  +N L+  FC++++F                     
Sbjct: 409 LGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVT 468

Query: 251 -----------GRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
                      G V   LH    M  R  AP+  TY  +++   K      A  ++ D  
Sbjct: 469 YNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDAL 528

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
            +G+     +Y T+I G CKM  L  A++++ +M   G  P+E TY ++I GYC++ NL 
Sbjct: 529 SKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLV 588

Query: 357 EAKRLH-----------------------------------KEMLDKGYGETTVTYNTLI 381
           EA +L                                     EM ++      VTY +LI
Sbjct: 589 EALKLKDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLI 648

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           AG C  G  D+AY+ + +M  KGI  ++I  + ++    + GKI
Sbjct: 649 AGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKI 692



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 81/391 (20%), Positives = 163/391 (41%), Gaps = 48/391 (12%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNP 138
           +Q + + + +    +H+  G +  +V+ N L  +L      + A+   + +   G +PN 
Sbjct: 443 KQEDFIKAFKLCDEMHNK-GVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNE 501

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    +    + G  + A   +      G   SI  +N+ + G  K+++     +++  
Sbjct: 502 VTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLK 561

Query: 199 LIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           + E G+         LI  +C  G + E  +L      DG+      +N LI+     + 
Sbjct: 562 MKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITGVFRSEE 621

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
             +++ LL  M  R  +P+  TY  +I G C      +AY  +  + ++G  P+ ++ + 
Sbjct: 622 LQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSK 681

Query: 310 VIHGLCKMGWLGDARKMWFEMI---------HKGLLP----------------------- 337
           ++  L + G + +A  +  ++          H   LP                       
Sbjct: 682 IVSSLYRHGKIDEANLILHQIADIDPIAAHAHSVELPKSDLRHLETQKIVDSFGKKAMSI 741

Query: 338 ---NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
              N   YN  I G C+  N+++ +R+  ++L KG+     TY +LI      G+ +EA+
Sbjct: 742 PISNNIVYNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAF 801

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L ++M   G+  +++ YN LI G CK G +
Sbjct: 802 CLRDDMINAGLVPNIVVYNALINGLCKSGNL 832



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 134/315 (42%), Gaps = 14/315 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   + V CN L +   +      A + L S       P+       +   C+     +A
Sbjct: 391 GLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCKQEDFIKA 450

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL---VWKLYH------DLIESGYLIQA 208
           F    ++   GV  ++ T+N+ L     +   +    +W L H      + +    L+ A
Sbjct: 451 FKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDA 510

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           F   G       + +  L  G     T +N +I  FC+ +   +  E+   M      PD
Sbjct: 511 FFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPD 570

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             TY  +I+G CK    +EA ++  D+ ER G    T MY ++I G+ +   L     + 
Sbjct: 571 EITYRTLIDGYCKVGNLVEALKL-KDMSERDGISSSTEMYNSLITGVFRSEELQKLNGLL 629

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM ++ L PN  TY S+I G+C    +++A   + +M+DKG     +  + +++ L  H
Sbjct: 630 AEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRH 689

Query: 388 GRTDEAYHLFEEMAQ 402
           G+ DEA  +  ++A 
Sbjct: 690 GKIDEANLILHQIAD 704


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 159/334 (47%), Gaps = 44/334 (13%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P+  +  + I  LC+   ++ A    +++K+  +  +I T+NS + G  K+ + + V  L
Sbjct: 201 PDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTL 260

Query: 196 YHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             +++             LI   C +GKV +  E++R ++E G+ P+   ++ ++  +C 
Sbjct: 261 LSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCL 320

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +    R   + + +  +   P+ F+Y  +ING CK +   +A ++F ++ ++G  PDTV 
Sbjct: 321 RGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVT 380

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLP----------------------------- 337
           Y+T++HGL ++G +GDA+K++ EM+  G  P                             
Sbjct: 381 YSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLE 440

Query: 338 ------NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                 N   Y  +I+G C+ D + EA  + +++   G      TYN +I G C  G  D
Sbjct: 441 RNREDTNISFYTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFD 500

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           E   +  +M   G   + ITYN ++QG+ +  KI
Sbjct: 501 EVKGILRKMEDNGCPANNITYNVIMQGFFRSNKI 534



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 81/335 (24%), Positives = 155/335 (46%), Gaps = 13/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++  + LF +++  + +   +         G   + + L +     C    I+ AF  
Sbjct: 60  PSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSV 119

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----------GYLIQAFC 210
                + G+  ++ T+N+ L G    ++      L+  L+            G ++    
Sbjct: 120 LPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLS 179

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G   +   LLR + +    P+   ++ +I   C+  N      LL+ M  +N  P+ F
Sbjct: 180 KRGHTEKTLSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIF 239

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           TY  +I+GLCK  +  +   + +++      P+   ++ +I GLCK G + DA ++   M
Sbjct: 240 TYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHM 299

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I KG+ P+  TY++++ GYC    ++ A+R+   + DKG      +Y+ LI G C     
Sbjct: 300 IEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNL 359

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +A  LF E++QKG+  D +TY+T++ G  + G+I
Sbjct: 360 AKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRI 394



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 153/336 (45%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ + N L D L +       K  +  + +   +PN ++  + I  LC+ G +E+A   
Sbjct: 236 PNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEV 295

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIK--IDRTDLVWKLYHD------LIESGYLIQAFCN 211
              + E GV   I T+++ + G C++  +DR   V+ +  D      +     LI  +C 
Sbjct: 296 MRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCK 355

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              +++  +L  ++ + GL P+   ++ ++    E    G   ++   M+     PD   
Sbjct: 356 KKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICL 415

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  ++ G  K     EA  +F+ L+      +   YT VI+GLCK   + +A  ++ ++ 
Sbjct: 416 HSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAHAIFEKLP 475

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             GL+P+  TYN MI G+CR    +E K + ++M D G     +TYN ++ G     +  
Sbjct: 476 SIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITYNVIMQGFFRSNKIS 535

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           E     +EMA +G   D  T   LI    +   IV+
Sbjct: 536 EIVSFMKEMAGRGFSFDATTTGVLINVLKENPSIVD 571



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 26/112 (23%), Positives = 49/112 (43%)

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           ++  L DA  ++  M+    LP+   ++ +      + +      L +EM   G   +  
Sbjct: 39  EVSCLDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDS 98

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             N +    CL  R D A+ +     + GI  +V+T+NTL+ G   E K+ +
Sbjct: 99  ILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTD 150



 Score = 41.2 bits (95), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 29/138 (21%), Positives = 62/138 (44%), Gaps = 1/138 (0%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A  +F+ +     +P  + ++ +   +  M        ++ EM   G+  ++   N + 
Sbjct: 45  DAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNIVT 104

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + YC    ++ A  +    L  G     VT+NTL+ GL    +  +A  LF+++ ++ I 
Sbjct: 105 NSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREKIC 164

Query: 407 R-DVITYNTLIQGYCKEG 423
             + + Y T++ G  K G
Sbjct: 165 EPNEVMYGTVMNGLSKRG 182


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/340 (29%), Positives = 164/340 (48%), Gaps = 12/340 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLI 154
           S  GF   L SCN L   L +    + A +    + ++G  P+  +    I  L + G +
Sbjct: 155 SGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKV 214

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
            EA    S++ +  +   + T+ S +LG  +    DL + ++  +++ G          L
Sbjct: 215 REAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   CN+G+V E  ++L +++E G+ P    +   I+  C  ++     EL+  M  R  
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  TY  +I+GL +  K   A  +++ + + G VP+TV Y  +I+ LC  G    A K
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 394

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  M   G L N  TYN +I G C   ++E+A  L ++ML  G   T VTYNTLI G  
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             G  + A  L + M + G   D  TYN L+ G+ K GK+
Sbjct: 455 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKL 494



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/424 (25%), Positives = 189/424 (44%), Gaps = 52/424 (12%)

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLK----QQNNVLLSIRFFQWLHSHYGFSPDLV 107
           + K R  + +LS I  ++ +  +F    L     +  N+ L+   F  +    G  P+ V
Sbjct: 211 KGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKE-GCDPNSV 269

Query: 108 SCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKL 164
           + + L + L        A+D L+     G  P   +  L I  LC     EEA    +++
Sbjct: 270 TYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARM 329

Query: 165 KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------------- 204
           K+ G   +++T+ + + G  ++ + ++   LYH +++ G                     
Sbjct: 330 KKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRF 389

Query: 205 ------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
                                   +I+  C  G + +   L  ++L+ G +P    +N L
Sbjct: 390 STALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTL 449

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I+ +  K N    + LL  M      PD +TY E+++G  K  K   A   F ++ E G 
Sbjct: 450 INGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGL 509

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            P+ V YT +I G  K G +  A  +   M   G  PN  +YN++I+G  + +   EA++
Sbjct: 510 NPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEK 569

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +  +M+++G     +TY TLI GLC +GRT  A+ +F +M ++    ++ TY++LI G C
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLC 629

Query: 421 KEGK 424
           +EGK
Sbjct: 630 QEGK 633



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 149/327 (45%), Gaps = 33/327 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L + L     F  A+    +++  G   N  +    I+ LC  G IE+A
Sbjct: 368 GLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKA 427

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F K+ +MG   ++ T+N+                          LI  +   G V+ 
Sbjct: 428 MVLFEKMLKMGPLPTVVTYNT--------------------------LINGYLTKGNVNN 461

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              LL  + E+G  P+   +N+L+S F +       S     MV     P+  +Y  +I+
Sbjct: 462 AARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALID 521

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K  K   A  +   ++E G  P+   Y  VI+GL K     +A K+  +M+ +GLLP
Sbjct: 522 GHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLP 581

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY ++I G CR    + A ++  +M  +       TY++LI GLC  G+ DEA    
Sbjct: 582 NVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEA---- 637

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGK 424
           E M++ G    + TY+TL+ G C++G+
Sbjct: 638 ERMSEIGCEPTLDTYSTLVSGLCRKGR 664



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 174/405 (42%), Gaps = 23/405 (5%)

Query: 38  QLYTEIAKQVC---KITRTKPRWEQTL-LSDIPSFNFNDPLFFREFLKQQNNVLLSIRFF 93
           Q Y EI K +C    I +    +E+ L +  +P+    + L      K   NV  + R  
Sbjct: 409 QTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYLTK--GNVNNAARLL 466

Query: 94  QWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCE 150
             +  + G  PD  + N L     +    + A  +       G +PNP S    I    +
Sbjct: 467 DLMKEN-GCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSK 525

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----- 205
            G ++ A     +++EMG   +++++N+ + G  K +R     K+   ++E G L     
Sbjct: 526 DGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVIT 585

Query: 206 ----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
               I   C +G+    +++   + +   +P    ++ LI   C++   G+  E    M 
Sbjct: 586 YTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE---GKADEA-ERMS 641

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
                P   TY  +++GLC+  +  EA ++  D+KERG+ PD  +Y +++   CK   + 
Sbjct: 642 EIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVD 701

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A K++  +  KG   +   Y ++I   C+   +EEA+ L   ML+K +    + +  L+
Sbjct: 702 HALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLV 761

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            GL   G  D    L   M  K    ++ TY  L +   + GK +
Sbjct: 762 DGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSI 806



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 134/312 (42%), Gaps = 16/312 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ VS   L D   +     +A+  L   +  G +PN  S    I  L +     EA
Sbjct: 508 GLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEA 567

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD---------LIESGYLIQA 208
                K+ E G+  ++ T+ + + G  +  RT   +K++HD         L     LI  
Sbjct: 568 EKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYG 627

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK  E      ++ E G  P    ++ L+S  C K  F    +L+  M  R   PD
Sbjct: 628 LCQEGKADEA----ERMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPD 683

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  ++   CK+ +   A ++F+ ++ +G+     +Y  +I  LCK G + +A+ ++ 
Sbjct: 684 REIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFD 743

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M+ K    +E  +  ++ G  +   L+   +L   M  K +     TY  L   L   G
Sbjct: 744 NMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIG 803

Query: 389 RTDEAYHLFEEM 400
           ++ E+  L +++
Sbjct: 804 KSIESEPLADKL 815



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 104/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I+A  N+ ++    + L ++   G      + N L+ +  + +       L   M+   
Sbjct: 134 MIKACRNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG 193

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   T+  +IN L K  K  EA  + + + +    PD   YT++I G C+   L  A 
Sbjct: 194 IQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAF 253

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            ++  M+ +G  PN  TY+++I+G C    ++EA  + +EM++KG   T  TY   I  L
Sbjct: 254 GVFDRMVKEGCDPNSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITAL 313

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C     +EA  L   M ++G   +V TY  LI G  + GK+
Sbjct: 314 CAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKL 354



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/298 (20%), Positives = 116/298 (38%), Gaps = 22/298 (7%)

Query: 8   VLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPS 67
            L++L++      NPN +  N  I     +  ++E A+++C         EQ LL ++ +
Sbjct: 532 ALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSE-AEKICD-----KMVEQGLLPNVIT 585

Query: 68  FNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD 127
           +         + L +      + + F  +       P+L + + L   L +      A +
Sbjct: 586 YTT-----LIDGLCRNGRTQFAFKIFHDMEKRKCL-PNLYTYSSLIYGLCQEGKADEA-E 638

Query: 128 FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
            +   G  P  ++    +  LC  G   EA      +KE G     + + S L+   K  
Sbjct: 639 RMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNL 698

Query: 188 RTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
             D   K++H +   G+         LI A C  G+V E   L   +LE     +   + 
Sbjct: 699 EVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWT 758

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            L+    ++       +LLH M ++N  P+  TY  +   L +  K +E+  + + LK
Sbjct: 759 VLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSIESEPLADKLK 816


>gi|224053663|ref|XP_002297917.1| predicted protein [Populus trichocarpa]
 gi|222845175|gb|EEE82722.1| predicted protein [Populus trichocarpa]
          Length = 670

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 163/368 (44%), Gaps = 50/368 (13%)

Query: 108 SCNVLFDSLVEARAFKVAMDF----LDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCAF 161
           S N + + +++   F  A++F    + + G S +PN L   L I+ +C+ GL+++A   F
Sbjct: 163 SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVF 222

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCND 212
             +        + T+ + + G  K DR D    L  ++   G          LI   C  
Sbjct: 223 RDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKK 282

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G +S   +L+  +   G +P    +N LI   C K    +   LL  MV+    P+  TY
Sbjct: 283 GDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTY 342

Query: 273 EEVINGLCKSRKRL-----------------------------------EAYRVFNDLKE 297
             +INGL K  + L                                   EA  +F ++  
Sbjct: 343 GTIINGLVKQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTV 402

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +GY  +T++Y+ VI GLC+ G   DA ++  EM +KG  PN YT +S++ G+    N   
Sbjct: 403 KGYELNTIVYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHR 462

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  + K+M    + +  V Y+ LI GLC  G+  EA  ++ +M  KG   DV+ Y+++I 
Sbjct: 463 AVEVWKDMAKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMIN 522

Query: 418 GYCKEGKI 425
           G    G +
Sbjct: 523 GLSIAGLV 530



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 152/337 (45%), Gaps = 16/337 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ +   L D L +A     A+  LD     G  P+P +  + I  LC+ G +  A   
Sbjct: 232 PDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKKGDLSRAAKL 291

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIK---------IDRTDLVWKLYHDLIESGYLIQAFC 210
              +   G   +  T+N+ + G C+K         +DR  +  K   +++  G +I    
Sbjct: 292 VDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRM-VSSKCVPNVVTYGTIINGLV 350

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G+  +G  +L  + E G       ++ LIS   ++        L   M  +    +  
Sbjct: 351 KQGRALDGACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTI 410

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y  VI+GLC+  K  +A  V +++  +G  P+    ++++ G  + G    A ++W +M
Sbjct: 411 VYSAVIDGLCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDM 470

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
                  NE  Y+ +IHG C+   ++EA  +  +ML KG     V Y+++I GL + G  
Sbjct: 471 AKHNFTQNEVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLV 530

Query: 391 DEAYHLFEEMAQKGIFR--DVITYNTLIQGYCKEGKI 425
           ++A  L+ EM  +G     DV+TYN L+   CK+  I
Sbjct: 531 EDAMQLYNEMLCQGPDSQPDVVTYNILLNTLCKQSSI 567



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 65/195 (33%), Positives = 104/195 (53%), Gaps = 3/195 (1%)

Query: 236 AFNKLISRFCEKKNFGRVSELL-HTMVAR--NRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +FN +++   ++  F R  E   H + A+  + +P+  T+  VI  +CK     +A +VF
Sbjct: 163 SFNSVLNVIIQEGLFHRALEFYNHVIGAKGVSISPNVLTFNLVIKAMCKVGLVDDAIQVF 222

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            D+  R   PD   Y T++ GLCK   + +A  +  EM   G  P+  T+N +I+G C+ 
Sbjct: 223 RDMTIRKCEPDVYTYCTLMDGLCKADRIDEAVSLLDEMQIDGCFPSPVTFNVLINGLCKK 282

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            +L  A +L   M  KG     VTYNTLI GLCL G+ ++A  L + M       +V+TY
Sbjct: 283 GDLSRAAKLVDNMFLKGCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTY 342

Query: 413 NTLIQGYCKEGKIVN 427
            T+I G  K+G+ ++
Sbjct: 343 GTIINGLVKQGRALD 357



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 151/360 (41%), Gaps = 35/360 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L   L      + A+  LD   S+   PN  +    I  L + G   + 
Sbjct: 299 GCIPNEVTYNTLIHGLCLKGKLEKAISLLDRMVSSKCVPNVVTYGTIINGLVKQGRALDG 358

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
            C  + ++E G   +   +++ + G  K  ++     L+ ++   GY         +I  
Sbjct: 359 ACVLALMEERGYCVNEYVYSTLISGLFKEGKSQEAMHLFKEMTVKGYELNTIVYSAVIDG 418

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGK  +  E+L ++   G  P     + L+  F E  N  R  E+   M   N   +
Sbjct: 419 LCRDGKPDDAVEVLSEMTNKGCTPNAYTCSSLMKGFFEAGNSHRAVEVWKDMAKHNFTQN 478

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+GLCK  K  EA  V+  +  +G  PD V Y+++I+GL   G + DA +++ 
Sbjct: 479 EVCYSVLIHGLCKDGKVKEAMMVWTQMLGKGCKPDVVAYSSMINGLSIAGLVEDAMQLYN 538

Query: 329 EMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT---------- 376
           EM+ +G    P+  TYN +++  C+  ++  A  L   MLD+G     VT          
Sbjct: 539 EMLCQGPDSQPDVVTYNILLNTLCKQSSISRAIDLLNSMLDRGCDPDLVTCTIFLRMLRE 598

Query: 377 -----------YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                       + L+  L    R   A  + E M QK +     T+  +++  CK  K+
Sbjct: 599 KLDPPQDGREFLDELVVRLLKRQRVLGASKIVEVMLQKLLPPKHSTWARVVENLCKPKKV 658


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 149/326 (45%), Gaps = 30/326 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + L  ++ +   F + +     + + G S N  +  ++I   C    +  A   
Sbjct: 73  PSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFCRRSQLSLALAI 132

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             K+ ++G   SI T NS                          L+  FC+  ++SE   
Sbjct: 133 LGKMMKLGYGPSIVTLNS--------------------------LLNGFCHGNRISEAVA 166

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           L+ Q++E G  P+   F  L+    +         L+  MV +   PD  TY  VINGLC
Sbjct: 167 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLC 226

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  +   A  + N +++     D V+Y T+I GLCK   + DA  ++ +M  KG+ P+ +
Sbjct: 227 KRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVF 286

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYN +I   C      +A RL  +ML+K      V +N LI      G+  EA  L++EM
Sbjct: 287 TYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM 346

Query: 401 AQ-KGIFRDVITYNTLIQGYCKEGKI 425
            + K  F DV+ YNTLI+G+CK  ++
Sbjct: 347 VKSKHCFPDVVAYNTLIKGFCKYKRV 372



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 154/334 (46%), Gaps = 14/334 (4%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+V  N + D L + +    A D    +++ G  P+  +    I CLC  G   +A    
Sbjct: 249 DVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLL 308

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----------LIQAFCN 211
           S + E  +   +  +N+ +   +K  +     KLY ++++S +          LI+ FC 
Sbjct: 309 SDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCK 368

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V EG E+ R++ + GLV     +  LI  F + ++      +   MV+    PD  T
Sbjct: 369 YKRVEEGMEVFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMT 428

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++GLC +     A  VF  +++R    D V YTT+I  LCK G + D   ++  + 
Sbjct: 429 YNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLS 488

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG+ PN  TY +M+ G+CR    EEA  L  EM + G    + TYNTLI      G   
Sbjct: 489 LKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEA 548

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  L +EM   G   D  T+  L+     +G++
Sbjct: 549 ASAELIKEMRSCGFAGDASTFG-LVTNMLHDGRL 581



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 134/282 (47%), Gaps = 9/282 (3%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL---------YHDLIESGY 204
           +++A   F  + +   F SI  ++  L    K+++ DLV  L          H+L     
Sbjct: 56  LDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
            I  FC   ++S    +L ++++ G  P     N L++ FC          L+  MV   
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +++GL +  K  EA  +   +  +G  PD V Y  VI+GLCK G    A 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  +M    +  +   YN++I G C+  ++++A  L  +M  KG      TYN LI+ L
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCL 295

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           C +GR  +A  L  +M +K I  D++ +N LI  + KEGK+V
Sbjct: 296 CNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLV 337



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 99/210 (47%)

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           D K+ +   L   +++    P    F+KL+S   +   F  V  L   M     + + +T
Sbjct: 53  DLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYT 112

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y   IN  C+  +   A  +   + + GY P  V   ++++G C    + +A  +  +M+
Sbjct: 113 YSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMV 172

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G  P+  T+ +++HG  + +   EA  L + M+ KG     VTY  +I GLC  G  D
Sbjct: 173 EMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPD 232

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            A +L  +M +  I  DV+ YNT+I G CK
Sbjct: 233 LALNLLNKMEKGKIEADVVIYNTIIDGLCK 262



 Score = 46.6 bits (109), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 73/186 (39%), Gaps = 29/186 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N+L D L      + A+   +++       +  +    I+ LC++G +E+ 
Sbjct: 421 GVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDG 480

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           +  F  L   GV  ++ T+ + + G                          FC  G   E
Sbjct: 481 WDLFCSLSLKGVKPNVVTYTTMMSG--------------------------FCRKGLKEE 514

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L  ++ EDG +P +  +N LI       +    +EL+  M +   A D  T+  V N
Sbjct: 515 ADALFVEMKEDGPLPNSGTYNTLIRARLRDGDEAASAELIKEMRSCGFAGDASTFGLVTN 574

Query: 278 GLCKSR 283
            L   R
Sbjct: 575 MLHDGR 580


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 8/338 (2%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESG 152
           +H H   +P   + N +  SL        A+ +L     +G+ P+  +    I   C + 
Sbjct: 1   MHRHAPPAPAAPTYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTN 60

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----GYLIQ 207
            ++ A   F K+   G    + ++ + + G  +  R D   +L+ ++ +        L++
Sbjct: 61  QVDVARDLFDKMPLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQPDMHMYAALVK 120

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G+  EG  +LR++ E G  P   A+  ++   C ++      E+L  M  +  AP
Sbjct: 121 GLCKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAP 180

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              T   VIN  CK  +  +A RV   +K RG  P+   Y  ++ G C  G +  A  + 
Sbjct: 181 CVVTCTAVINAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALL 240

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M   G+ P+  TYN +I G C   ++E A RL + M   G      TYN LI  LC  
Sbjct: 241 NKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKD 300

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GRTD+A  LF+ +  +GI  + +T+N+LI G CK GK+
Sbjct: 301 GRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKV 338



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 146/328 (44%), Gaps = 31/328 (9%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G +P +V+C  + ++  +    + A +V ++ +   G  PN  +    +Q  C  G + +
Sbjct: 177 GLAPCVVTCTAVINAYCKEGRMSDALRV-LELMKLRGCKPNVWTYNALVQGFCNEGKVHK 235

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           A    +K++  GV     T+N                           LI+  C DG + 
Sbjct: 236 AMALLNKMRVCGVNPDAVTYN--------------------------LLIRGQCIDGHIE 269

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
             + LLR +  DGL+ +   +N LI+  C+     +   L  ++  R   P+  T+  +I
Sbjct: 270 SAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLI 329

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           NGLCKS K   A++    +   G  PDT  Y++ I  LCKM    +      EM+ K + 
Sbjct: 330 NGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVK 389

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P+   Y  +IH   +  N     R   EM+  G     VTY T +   C+ GR +EA ++
Sbjct: 390 PSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENV 449

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             EM++ G+  D + YNTL+ G+   G+
Sbjct: 450 LMEMSKNGVTVDTMAYNTLMDGHASIGQ 477



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 154/358 (43%), Gaps = 33/358 (9%)

Query: 101 GFSPDLVSCNVLF-----DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           G +PD V+ N+L      D  +E+ AF++ +  ++  G   +  +    I  LC+ G  +
Sbjct: 247 GVNPDAVTYNLLIRGQCIDGHIES-AFRL-LRLMEGDGLIADQYTYNALINALCKDGRTD 304

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           +A   F  L+  G+  +  T+NS + G  K  + D+ WK    ++ +G           I
Sbjct: 305 QACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFI 364

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           +  C      EG   + ++L+  + P    +  +I +  +++N+G V+     MV+    
Sbjct: 365 EHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCN 424

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY   +   C   +  EA  V  ++ + G   DT+ Y T++ G   +G    A  +
Sbjct: 425 PDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSI 484

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV----------- 375
             +M     +PN++TY  ++    R+  +E+   L    + K    T V           
Sbjct: 485 LKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNE 544

Query: 376 ------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
                 TY++++ G    GRT+EA  L   M +  I  +   Y  L+  +CK  + ++
Sbjct: 545 FLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLD 602



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 81/353 (22%), Positives = 141/353 (39%), Gaps = 29/353 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ + N L            AM  L+     G +P+  +  L I+  C  G IE A
Sbjct: 212 GCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESA 271

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     ++  G+     T+N+ +    K  RTD    L+  L   G          LI  
Sbjct: 272 FRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSLETRGIKPNAVTFNSLING 331

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GKV   ++ L +++  G  P+   ++  I   C+ K        +  M+ ++  P 
Sbjct: 332 LCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEGLSFIGEMLQKDVKPS 391

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  VI+ L K R      R + ++   G  PD V YTT +   C  G L +A  +  
Sbjct: 392 TVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLM 451

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI------- 381
           EM   G+  +   YN+++ G+  I   + A  + K+M          TY  L+       
Sbjct: 452 EMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMR 511

Query: 382 ----------AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
                     AG+       + + LF+ M +     +  TY+++++G+ ++G+
Sbjct: 512 LVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGR 564



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 74/352 (21%), Positives = 159/352 (45%), Gaps = 29/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+ V+ N L + L ++    +A  FL+   S G +P+  +   +I+ LC+    +E 
Sbjct: 317 GIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHLCKMKGSQEG 376

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
                ++ +  V  S   +   +   +K     LV + + +++ SG           ++A
Sbjct: 377 LSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDVVTYTTSMRA 436

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C +G+++E   +L ++ ++G+  +  A+N L+              +L  M +    P+
Sbjct: 437 YCIEGRLNEAENVLMEMSKNGVTVDTMAYNTLMDGHASIGQTDHAVSILKQMTSVASVPN 496

Query: 269 NFTY-------------EEVI----NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
            FTY             E+V+     G+ K+ +  + + +F+ +K+  ++P++  Y++++
Sbjct: 497 QFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGLFDVMKKNEFLPNSGTYSSIL 556

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G  + G   +A  +   M    +  NE  Y +++  +C+     +A  L   M+  G+ 
Sbjct: 557 EGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHGFI 616

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              ++Y  L++GL   G+TD+A  +F     K    D I +  +I G  K+G
Sbjct: 617 PHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKG 668



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/138 (23%), Positives = 66/138 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++ F  DG+  E   L+  + ED +      +  L++ FC+ K +     L+ +M+   
Sbjct: 555 ILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCKSKRYLDAWVLVCSMIQHG 614

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   +Y+ +++GL    +  +A  +F + + + Y PD +++  +I GL K G    +R
Sbjct: 615 FIPHLMSYQHLLSGLICEGQTDKAKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISR 674

Query: 325 KMWFEMIHKGLLPNEYTY 342
           +M   +      P+  TY
Sbjct: 675 EMIIMLERMNCRPSHQTY 692


>gi|359497434|ref|XP_003635514.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 347

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 146/326 (44%), Gaps = 29/326 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L   L +      A + ++     G  PN  +  + I   C+ G +EEA
Sbjct: 9   GCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEA 68

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                ++   G+  +   +N                           LI A C D KV +
Sbjct: 69  RNVLDEMSGKGLALNAVGYNC--------------------------LISALCKDEKVQD 102

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +   +   G  P+   FN LI   C+   F     L   M+      +  TY  +I+
Sbjct: 103 ALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIH 162

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
              +     EA ++ ND+  RG   D + Y  +I  LC+ G +     ++ +M+ KGL P
Sbjct: 163 AFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNP 222

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  + N +I+G CR  N++ A    ++M+ +G     VTYN+LI GLC  GR  EA +LF
Sbjct: 223 NNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLF 282

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEG 423
           +++  +GI  D ITYNTLI  +CKEG
Sbjct: 283 DKLQVEGICPDAITYNTLISWHCKEG 308



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 136/267 (50%), Gaps = 9/267 (3%)

Query: 167 MGVFGSIKTWNSALLGCIK----IDRTDLVWKLY-----HDLIESGYLIQAFCNDGKVSE 217
           +G    I T+N+ +LG  K    +   +L+ ++       ++I    LI  FC +G++ E
Sbjct: 8   VGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEE 67

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +L ++   GL      +N LIS  C+ +       +   M ++   PD FT+  +I 
Sbjct: 68  ARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIF 127

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK  K  EA  ++ D+   G + +T+ Y T+IH   + G + +A K+  +M+ +G   
Sbjct: 128 GLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPL 187

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           ++ TYN +I   CR  N+E+   L ++M+ KG     ++ N LI GLC  G    A    
Sbjct: 188 DDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFL 247

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +M  +G+  D++TYN+LI G CK G+
Sbjct: 248 RDMIHRGLTPDIVTYNSLINGLCKTGR 274



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 72/228 (31%), Positives = 117/228 (51%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D+     LI   C  G +    EL+ ++   G  P    +  LI RFC++        +L
Sbjct: 13  DIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVL 72

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  +  A +   Y  +I+ LCK  K  +A  +F D+  +G  PD   + ++I GLCK+
Sbjct: 73  DEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKV 132

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
               +A  ++ +M+ +G++ N  TYN++IH + R   ++EA +L  +ML +G     +TY
Sbjct: 133 NKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITY 192

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           N LI  LC  G  ++   LFE+M  KG+  + I+ N LI G C+ G I
Sbjct: 193 NGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNI 240



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/202 (34%), Positives = 106/202 (52%)

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
            +L  G  P+   +N LI   C+K       EL++ M  +   P+  TY  +I+  CK  
Sbjct: 4   SMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEG 63

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +  EA  V +++  +G   + V Y  +I  LCK   + DA  M+ +M  KG  P+ +T+N
Sbjct: 64  RLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFN 123

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           S+I G C+++  EEA  L+++ML +G    T+TYNTLI      G   EA  L  +M  +
Sbjct: 124 SLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFR 183

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           G   D ITYN LI+  C+ G I
Sbjct: 184 GCPLDDITYNGLIKALCRAGNI 205



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/65 (47%), Positives = 37/65 (56%)

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           +H+ ML  G G    TYNTLI GLC  G    A  L  EM  KG   +VITY  LI  +C
Sbjct: 1   MHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFC 60

Query: 421 KEGKI 425
           KEG++
Sbjct: 61  KEGRL 65


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 151/315 (47%), Gaps = 11/315 (3%)

Query: 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180
           A  + MD + + G +P+  ++   ++   E GLIE A   F ++   GV     ++   +
Sbjct: 166 AVGMVMD-MQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKLMV 224

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
           +GC +  +     +    +I+ G+         ++ A C +G V+      R++++ G  
Sbjct: 225 IGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDLGFK 284

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    F  LI   C+K +  +  E+L  MV     P+ +T+  +I+GLCK     +A+R+
Sbjct: 285 PNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRL 344

Query: 292 FNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
           F  L +   Y P+   YT++I G CK   L  A  ++  M  +GL PN  TY ++I+G+C
Sbjct: 345 FLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHC 404

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +  +   A  L   M D+G+     TYN  I  LC   R  EAY L  +    G+  D +
Sbjct: 405 KAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGV 464

Query: 411 TYNTLIQGYCKEGKI 425
           TY  LIQ  CK+  I
Sbjct: 465 TYTILIQEQCKQNDI 479



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/348 (27%), Positives = 156/348 (44%), Gaps = 17/348 (4%)

Query: 94  QWLHS--HYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           +WL      GF PD  +C ++  +L E     RA       +D  GF PN  +    I  
Sbjct: 238 RWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMID-LGFKPNLINFTSLIDG 296

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC+ G I++AF    ++   G   ++ T  + + G  K   T+  ++L+  L+ S     
Sbjct: 297 LCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKP 356

Query: 205 -------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  +I  +C + K++    L  ++ E GL P    +  LI+  C+  +FGR  EL+
Sbjct: 357 NVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELM 416

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M      P+ +TY   I+ LCK  +  EAY + N     G   D V YT +I   CK 
Sbjct: 417 NLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQ 476

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A   +  M   G   +    N +I  +CR   ++E++RL + ++  G   T  TY
Sbjct: 477 NDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETY 536

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            ++I+  C  G  D A   F  M + G   D  TY +LI G CK+  +
Sbjct: 537 TSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 584



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 152/340 (44%), Gaps = 13/340 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P+L++   L D L +  + K A + L+     G+ PN  +    I  LC+ G  E+A
Sbjct: 282 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALIDGLCKRGWTEKA 341

Query: 158 FCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           F  F KL     +  ++ T+ S + G  K D+ +    L+  + E G          LI 
Sbjct: 342 FRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNTYTTLIN 401

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G     YEL+  + ++G +P    +N  I   C+K       ELL+   +     
Sbjct: 402 GHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAFSCGLEA 461

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I   CK     +A   F  + + G+  D  +   +I   C+   + ++ +++
Sbjct: 462 DGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLF 521

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             ++  GL+P + TY SMI  YC+  +++ A +    M   G    + TY +LI+GLC  
Sbjct: 522 QLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKK 581

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              DEA  L+E M  +G+    +T  TL   YCK     N
Sbjct: 582 SMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKRNDSAN 621



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 153/338 (45%), Gaps = 16/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G+ P++ +   L D L +     +AF++ +  + S  + PN ++    I   C+   +  
Sbjct: 317 GWKPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNR 376

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQ 207
           A   FS++KE G+F ++ T+ + + G  K       ++L + + + G++         I 
Sbjct: 377 AEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAID 436

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           + C   +  E YELL +    GL  +   +  LI   C++ +  +       M       
Sbjct: 437 SLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEA 496

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D      +I   C+ +K  E+ R+F  +   G +P    YT++I   CK G +  A K +
Sbjct: 497 DMRLNNILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYF 556

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G +P+ +TY S+I G C+   ++EA +L++ M+D+G     VT  TL    C  
Sbjct: 557 HNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCKR 616

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  A  L E + +K   R   T  TL++  C E K+
Sbjct: 617 NDSANAMILLEPLDKKLWIR---TVRTLVRKLCSEKKV 651



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 62/224 (27%), Positives = 116/224 (51%), Gaps = 5/224 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++ F   G+++E   ++  +   GL P +   N ++    E         +   M  R 
Sbjct: 153 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 212

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD+ +Y+ ++ G  +  K  EA R    + +RG++PD    T ++  LC+ G +   R
Sbjct: 213 VVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVN--R 270

Query: 325 KMWF--EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
            +W+  +MI  G  PN   + S+I G C+  ++++A  + +EM+  G+     T+  LI 
Sbjct: 271 AIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTALID 330

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGKI 425
           GLC  G T++A+ LF ++ +   ++ +V TY ++I GYCKE K+
Sbjct: 331 GLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKL 374


>gi|414591141|tpg|DAA41712.1| TPA: hypothetical protein ZEAMMB73_063178 [Zea mays]
          Length = 374

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/333 (30%), Positives = 158/333 (47%), Gaps = 41/333 (12%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L S   S +P +  + +  LC+SG +++A      +   GV  +   +NS LL C    +
Sbjct: 5   LGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNS-LLDCYVRQK 63

Query: 189 TD-----LVWKLYHDLIES-----------------------------GYLIQAFCNDGK 214
            D     ++  + ++ IE+                             G LI  FC  G+
Sbjct: 64  DDGRVQEILEIMENEGIEATVGDGTCGGPPKVLDECVGNGVEPNERTYGVLINGFCKIGQ 123

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP---DNFT 271
           +     LL  +   G+      FN +I  +C K   G V + L    A  +     D +T
Sbjct: 124 MEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRK---GMVDDALKIKAAMEKMGVELDIYT 180

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +  GLC+  +  EA  + + + E G VP+ V YTT+I   CK G + +AR+++ EM 
Sbjct: 181 YNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMA 240

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  P+  TYN MIHGY +  ++ EA+R  KEM  KG+     TY +L+ G C++G+ D
Sbjct: 241 EKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVD 300

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            A  LFEEM Q+G   +V+ Y  LI G  KEG+
Sbjct: 301 VALKLFEEMKQRGTEPNVVAYTALISGLAKEGR 333



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/291 (26%), Positives = 132/291 (45%), Gaps = 26/291 (8%)

Query: 126 MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK 185
           +D     G  PN  +  + I   C+ G +E A    + ++  GV  +   +N+       
Sbjct: 96  LDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNT------- 148

Query: 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
                              +I  +C  G V +  ++   + + G+  +   +N L    C
Sbjct: 149 -------------------MIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLC 189

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
                     LLH M+     P+  TY  +I+  CK    +EA R+F ++ E+G  P  V
Sbjct: 190 RVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVV 249

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  +IHG  K G + +A +   EM  KG +P+ YTY S++HG+C    ++ A +L +EM
Sbjct: 250 TYNVMIHGYAKKGSIREAERFRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEM 309

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
             +G     V Y  LI+GL   GR++ A+ L+++M + G+  D   Y+ L+
Sbjct: 310 KQRGTEPNVVAYTALISGLAKEGRSEAAFQLYDDMLKAGLIPDDSLYSALV 360



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 129/271 (47%), Gaps = 13/271 (4%)

Query: 101 GFSPDLVSCNVL---FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  +  VL   F  + +  A ++ +  +   G   N       I   C  G++++A
Sbjct: 103 GVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDA 162

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + +++MGV   I T+N+   G  +++R D    L H +IE G          LI  
Sbjct: 163 LKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISI 222

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG + E   L R++ E G  P    +N +I  + +K +          M  +   PD
Sbjct: 223 HCKDGDMVEARRLFREMAEKGATPSVVTYNVMIHGYAKKGSIREAERFRKEMEKKGFVPD 282

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +++G C + K   A ++F ++K+RG  P+ V YT +I GL K G    A +++ 
Sbjct: 283 VYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGRSEAAFQLYD 342

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           +M+  GL+P++  Y++++ G    DN ++ K
Sbjct: 343 DMLKAGLIPDDSLYSALV-GSLHTDNRKDVK 372



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 13/228 (5%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           + +  ++   C  G+V +   LL  +   G+      +N L+  +  +K+ GRV E+L  
Sbjct: 15  LAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNSLLDCYVRQKDDGRVQEILEI 74

Query: 260 MVARNRAPDNFTYEEVI-NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           M       +N   E  + +G C    +     V ++    G  P+   Y  +I+G CK+G
Sbjct: 75  M-------ENEGIEATVGDGTCGGPPK-----VLDECVGNGVEPNERTYGVLINGFCKIG 122

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +  A  +  +M  +G+  N+  +N+MI GYCR   +++A ++   M   G      TYN
Sbjct: 123 QMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYN 182

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           TL  GLC   R DEA  L   M + G+  + +TY TLI  +CK+G +V
Sbjct: 183 TLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMV 230


>gi|356513957|ref|XP_003525674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g40400-like [Glycine max]
          Length = 626

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 151/337 (44%), Gaps = 14/337 (4%)

Query: 102 FSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           F P++++CN L   L             + +   G   N  +  +    LC+ G  ++  
Sbjct: 209 FIPNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVT 268

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
               K++E G    + T+N+ +    K  R +  + LY          +LI    L+   
Sbjct: 269 RFLDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGL 328

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C +GKV E ++L  Q++  G+ P+  ++N L+S +C +        LLH M+     PD+
Sbjct: 329 CEEGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDS 388

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            T   ++ G  +  K L A     +LK  R  +P+  +Y  +I  LC  G    AR    
Sbjct: 389 VTCRLIVEGFARDGKLLSALNTVVELKRFRIKIPED-LYDYLIVALCIEGRPFAARSFLL 447

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            +   G +P   TYN ++   C+ +N+EEA  L  EM+ +      V Y  +I+ LC   
Sbjct: 448 RISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVN 507

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           RT EA  L EEM   GI  DV     LI GYC+E K+
Sbjct: 508 RTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKV 544



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 159/380 (41%), Gaps = 35/380 (9%)

Query: 77  REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------- 129
           R  L+ Q++    + FF W+ +    +P L +  V+   L  +R F  AM+ L       
Sbjct: 91  RILLRCQSDHSSVLTFFNWVKNDLNITPTLHNYCVIVHILAWSRVFSHAMNLLSELIQLV 150

Query: 130 --DSTGFSP-----------------NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170
             +     P                 NP   ++ I+   ++G++E+    F +  E    
Sbjct: 151 EVEGVCVPPNDGIYENLVECTEDCNWNPAIFDMLIKAYVKAGMVEKGLATFRRNIEACFI 210

Query: 171 GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYEL 221
            ++   N  L G  + +     W +Y ++   G          +    C DG   +    
Sbjct: 211 PNVIACNCLLSGLSRFNYIGQCWAVYEEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRF 270

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           L ++ E+G  P+   +N L++ +C+K+       L   M  R   P+  T+  ++NGLC+
Sbjct: 271 LDKMEEEGFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCE 330

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
             K  EA+++F+ +  RG  PD V Y T++ G C+ G +   R +  EMI  G+ P+  T
Sbjct: 331 EGKVKEAHQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVT 390

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
              ++ G+ R   L  A     E+           Y+ LI  LC+ GR   A      ++
Sbjct: 391 CRLIVEGFARDGKLLSALNTVVELKRFRIKIPEDLYDYLIVALCIEGRPFAARSFLLRIS 450

Query: 402 QKGIFRDVITYNTLIQGYCK 421
           Q G    + TYN L++  CK
Sbjct: 451 QDGYMPKINTYNKLVESLCK 470



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 81/332 (24%), Positives = 155/332 (46%), Gaps = 16/332 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PDLV+ N L +S  + R  + A      +   G  PN  +  + +  LCE G ++EA
Sbjct: 278 GFEPDLVTYNTLVNSYCKKRRLEDAFYLYKIMYIRGVMPNLITHTVLMNGLCEEGKVKEA 337

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F ++   G+   + ++N+ + G  +  +  +   L H++I +G          +++ 
Sbjct: 338 HQLFHQMVHRGIDPDVVSYNTLVSGYCREGKMQMCRSLLHEMIGNGICPDSVTCRLIVEG 397

Query: 209 FCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFC-EKKNFGRVSELLHTMVARNRA 266
           F  DGK+      + ++    + +PE+  ++ LI   C E + F   S LL  +      
Sbjct: 398 FARDGKLLSALNTVVELKRFRIKIPEDL-YDYLIVALCIEGRPFAARSFLLR-ISQDGYM 455

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   TY +++  LCK     EA  + +++ +R  + + V Y  VI  LC++    +A  +
Sbjct: 456 PKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNLVAYRAVISCLCRVNRTLEAEGL 515

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EM+  G+LP+     ++I+GYC  + +++A  L K   ++     T +YN ++   C 
Sbjct: 516 LEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKFFANEFQVYDTESYNAVVKVFCD 575

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            G   E   L +++ + G   + +T   +I G
Sbjct: 576 VGNVAELLELQDKLLKVGYVSNRLTCKYVIHG 607



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 58/123 (47%)

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           +  ++  +I    K G +      +   I    +PN    N ++ G  R + + +   ++
Sbjct: 177 NPAIFDMLIKAYVKAGMVEKGLATFRRNIEACFIPNVIACNCLLSGLSRFNYIGQCWAVY 236

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +EM   G      T+N +   LC  G TD+     ++M ++G   D++TYNTL+  YCK+
Sbjct: 237 EEMGRLGIHRNAYTFNIMTHVLCKDGDTDKVTRFLDKMEEEGFEPDLVTYNTLVNSYCKK 296

Query: 423 GKI 425
            ++
Sbjct: 297 RRL 299



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/181 (22%), Positives = 82/181 (45%), Gaps = 13/181 (7%)

Query: 117 VEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           +E R F  A  FL      G+ P  N+    ++ LC+   +EEA    S++ +  +  ++
Sbjct: 435 IEGRPF-AARSFLLRISQDGYMPKINTYNKLVESLCKFNNVEEALILKSEMVKRSMILNL 493

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAFCNDGKVSEGYELLRQ 224
             + + +    +++RT     L  +++ SG L         I  +C + KV +   LL+ 
Sbjct: 494 VAYRAVISCLCRVNRTLEAEGLLEEMVSSGILPDVEISRALINGYCEENKVDKAVSLLKF 553

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
              +  V +  ++N ++  FC+  N   + EL   ++      +  T + VI+GL K+ +
Sbjct: 554 FANEFQVYDTESYNAVVKVFCDVGNVAELLELQDKLLKVGYVSNRLTCKYVIHGLQKAME 613

Query: 285 R 285
           +
Sbjct: 614 Q 614


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/331 (28%), Positives = 153/331 (46%), Gaps = 25/331 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P +V+   L  + ++A+   VA +  +   + G  PN  +    I   C+SG IE+A
Sbjct: 554 GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKA 613

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------GYLIQAFCN 211
              +++++                G   I   D+ +K+ +++ E       G L+   C 
Sbjct: 614 CQIYARMR----------------GDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCK 657

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             KV +  +LL  +  DG  P    ++ LI  FC+        E+ H MV     P+ +T
Sbjct: 658 AHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYT 717

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ L K ++     +V + + E    P+ V+YT +I GL K+    +A K+   M 
Sbjct: 718 YSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMME 777

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TY +MI G+ +   +++   L +EM  KG     VTY  LI   C  G  D
Sbjct: 778 EKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLD 837

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           EAY L EEM Q    + V +Y  +I+GY +E
Sbjct: 838 EAYALLEEMKQTYWPKHVSSYCKVIEGYKRE 868



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 153/350 (43%), Gaps = 18/350 (5%)

Query: 94  QWLH---SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           Q +H   S  G S D  +      +L +   ++ A+  ++   F PN       I  LCE
Sbjct: 261 QLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFVPNTILYNKMISGLCE 320

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------- 203
           +   EEA    ++++      +++T+   L GC+   +     ++   +I  G       
Sbjct: 321 ASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTI 380

Query: 204 --YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK------NFGRVSE 255
              L+ A+C     S  Y+LL+++ +    P    +N LI   C          F    +
Sbjct: 381 FNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEK 440

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
             + M++     +          LC   K  +AY+V +++   G+VPDT  Y+ VI  LC
Sbjct: 441 AYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLC 500

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
               + +A  ++ EM   G++P+ YTY  +I  + +   +++A     EM+  G   T V
Sbjct: 501 NASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVV 560

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TY TLI       +   A  LFE M  KG F +VITY  LI GYCK G I
Sbjct: 561 TYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNI 610



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 140/334 (41%), Gaps = 26/334 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L D L +A   K A D L++    G  PN    +  I   C++  ++EA   
Sbjct: 643 PNVVTYGALVDGLCKAHKVKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEV 702

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F K+ E G   ++ T++S +    K  R DLV K+   ++E+           +I     
Sbjct: 703 FHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSK 762

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K  E Y+L+  + E G  P    +  +I  F +     +  EL   M ++  AP+  T
Sbjct: 763 VAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVT 822

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-----LCKMGWLGDARKM 326
           Y  +IN  C +    EAY +  ++K+  +      Y  VI G     +  +G L +  K 
Sbjct: 823 YTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEK- 881

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT--YNTLIAGL 384
                  G  P    Y  +I  + +   LE A  LHKE++            Y +LI   
Sbjct: 882 ------NGSAPIILLYKVLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSF 935

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
               +   A+ LF +M + G+  D+ T+  L+ G
Sbjct: 936 SYASKIGHAFELFYDMIRDGVIPDLGTFVHLLMG 969



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/375 (23%), Positives = 151/375 (40%), Gaps = 23/375 (6%)

Query: 72  DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS 131
           +P    E L    +  L ++FF W     G+         L D        +V  +FL  
Sbjct: 137 NPDLVVEILSFLKSPELCVKFFLWAGRQIGYDHTPAVYIALLDVFERGSYDRVPEEFLRE 196

Query: 132 TGFSPNP---NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
                       L + I+  C +GL   A     +LK+ G   +  T+N+ +   ++ D+
Sbjct: 197 IRGDDKEVLGKLLNVLIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADK 256

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D    ++ ++ E G         +  QA C  GK  E   L+ +   +  VP    +NK
Sbjct: 257 LDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEK---EDFVPNTILYNK 313

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL-EAYRVFNDLKER 298
           +IS  CE   F    + L+ M + +  P+  TY  ++ G C ++K+L    R+ + +   
Sbjct: 314 MISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCG-CLNKKQLGRCKRILSMMIAE 372

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL--- 355
           G  P   ++ +++H  CK      A K+  +M      P    YN +I   C    L   
Sbjct: 373 GCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGP 432

Query: 356 ---EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
              E A++ + EML  G     V   +    LC  G+ ++AY +  EM   G   D  TY
Sbjct: 433 VTFELAEKAYNEMLSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTY 492

Query: 413 NTLIQGYCKEGKIVN 427
           + +I   C   ++ N
Sbjct: 493 SEVIGFLCNASRVEN 507


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 96/401 (23%), Positives = 185/401 (46%), Gaps = 39/401 (9%)

Query: 33  TKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSF-NFNDPLFFREFLKQQ--NNVLLS 89
            KES+   + + +  C++   +  W   L + +        P   R  L+ Q   +V  +
Sbjct: 57  AKESR---SRLVRDTCRLLELRESWSPKLEAQLRHLLRVLSPPQVRAVLRAQARGDVRRA 113

Query: 90  IRFFQWLHSH--YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
             FF+W      Y  +P+     + +    + R+    +  +   G +P+ +   + +  
Sbjct: 114 FEFFRWADRQWRYRHAPEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNV 173

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
           L  +G +++A     +++ +GV   + T+N                           LI+
Sbjct: 174 LVVAGRVDKALEFAERMRRVGVEPDVYTYNC--------------------------LIK 207

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA- 266
             C   +V +  E++  +L++G  P+  ++  ++S  C++K    V  LL  M  RN A 
Sbjct: 208 GLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRM--RNDAG 265

Query: 267 --PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  TY  +I+GL K     EA     + + + +  D V Y+ ++H  C  G + +A+
Sbjct: 266 LFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAK 325

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++  EMI KG  P+  TY++++ G+CRI  L++A+++ K M        TVT+  L+ GL
Sbjct: 326 EIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGL 385

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G+T EA+ L  +  ++      ITY+ ++ G+ +EGK+
Sbjct: 386 CKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKL 426



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 159/371 (42%), Gaps = 48/371 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N L   L  AR    AM+ +      G  P+  S    +  LC+   +EE 
Sbjct: 194 GVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRVEEV 253

Query: 158 FCAFSKLK-EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD-------LIESGY--LIQ 207
                +++ + G+F    T+N  + G  K    D   +   +       + E GY  ++ 
Sbjct: 254 RGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVH 313

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           +FC +G+++E  E++ +++  G  P+   ++ ++  FC      +  +++  M   +  P
Sbjct: 314 SFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKP 373

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  T+  ++NGLCK  K  EA+ + N  +E  + P  + Y+ V+HG  + G L ++  + 
Sbjct: 374 NTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVV 433

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG---- 383
            +M+ KG  P     N +IH  C+     EAK   ++   KG     V + T+I G    
Sbjct: 434 VQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQ 493

Query: 384 -------------------------------LCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
                                          L   GR  EA  L E+M  +G+    +TY
Sbjct: 494 GDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTY 553

Query: 413 NTLIQGYCKEG 423
            T+I  YC++G
Sbjct: 554 RTVIHRYCEKG 564



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/392 (23%), Positives = 162/392 (41%), Gaps = 49/392 (12%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL-DSTG--FS 135
           FL ++  V       Q + +  G  PD V+ NVL   L +      A++FL +S G  F 
Sbjct: 243 FLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFR 302

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
            +       +   C +G + EA     ++   G    + T+++ + G  +I   D   K+
Sbjct: 303 VDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKM 362

Query: 196 YHDL---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +         +    L+   C  GK SE +ELL +  E+   P +  ++ ++  F  
Sbjct: 363 MKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRR 422

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           +       +++  M+ +   P       +I+ LCK  K  EA       + +G   + V 
Sbjct: 423 EGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVN 482

Query: 307 YTTVIHG-----------------------------------LCKMGWLGDARKMWFEMI 331
           +TTVIHG                                   L K G L +A  +  +M+
Sbjct: 483 FTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKML 542

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           ++GLLP   TY ++IH YC   NLE+   L ++ML +   E    YN ++  LC  G+ +
Sbjct: 543 NRGLLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLARQ--EMKSAYNQVVEKLCAFGKLN 600

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EAY L  ++ +    RD  T + L++ +   G
Sbjct: 601 EAYSLLYKILRTASVRDAQTCHILMESFLNRG 632



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 84/215 (39%), Gaps = 11/215 (5%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF P    + L I  LC+ G   EA     + +  G   ++  + + + G  +    +  
Sbjct: 440 GFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESA 499

Query: 193 WKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L  D+  S           ++ A    G++ E   L+ ++L  GL+P    +  +I R
Sbjct: 500 LSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVIHR 559

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +CEK N   +  LL  M+AR        Y +V+  LC   K  EAY +   +     V D
Sbjct: 560 YCEKGNLEDLLNLLEKMLARQEMKS--AYNQVVEKLCAFGKLNEAYSLLYKILRTASVRD 617

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
                 ++      G    A  +   M  + L+P+
Sbjct: 618 AQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPD 652



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/86 (30%), Positives = 39/86 (45%)

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           +  ++  Y R   L  A R+   M   G        N  +  L + GR D+A    E M 
Sbjct: 132 FAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMR 191

Query: 402 QKGIFRDVITYNTLIQGYCKEGKIVN 427
           + G+  DV TYN LI+G C   ++V+
Sbjct: 192 RVGVEPDVYTYNCLIKGLCGARRVVD 217


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/436 (24%), Positives = 188/436 (43%), Gaps = 52/436 (11%)

Query: 36  SQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFL---KQQNNVLLSIRF 92
           S+  Y  +    CK+ R      + LL  +   NF D   +   +    + N +  ++  
Sbjct: 263 SRVAYNSLMDGYCKLGRVDDGL-KLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALEL 321

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
           F+ L S YG  P+  +   +   L +A+  + A  F D    + +  S    I+ L +S 
Sbjct: 322 FKLLSS-YGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE---ALDVISYTTVIKGLADSK 377

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------- 203
            I+EA   F KLK  G   ++  + + + G +K  R +   K + D+  S          
Sbjct: 378 RIDEACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYT 437

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I   C    + +  ++  Q+++ G VP+   +  LI  F +        +LL  M+ +
Sbjct: 438 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTK 497

Query: 264 NRAPDNFTYEEVINGLCK----------------------------------SRKRLE-A 288
              P   TY  +++G CK                                  S+ R E A
Sbjct: 498 GPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEA 557

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
           Y+V  ++  RG  PD ++YT++I  L   G + +AR ++  MI KG  P+  TY ++I  
Sbjct: 558 YQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQN 617

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           + +I N+E A  + + M   G G     YN+L+ G     R D+A+ +++ M   GI  +
Sbjct: 618 FSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPN 677

Query: 409 VITYNTLIQGYCKEGK 424
            +T+N L+ G  K+GK
Sbjct: 678 AVTFNVLMHGLFKDGK 693



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 174/350 (49%), Gaps = 14/350 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM-DFLDSTGFS--PNPNSLELYI 145
           +   F+ L +  G SP++V+   + D L++A   +  + +F D +G S  P   +  + I
Sbjct: 382 ACELFEKLKTA-GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVI 440

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
             LC++ ++ +A   F ++ + G      T+ + + G  K  + D   KL   ++  G  
Sbjct: 441 DGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE 500

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   ++  FC    ++E  E++ Q+ E G  P    F  L+S +  K       ++
Sbjct: 501 PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQV 560

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M AR  APD   Y  +I+ L  + +  EA  VF+ + E+G  PD + Y T+I    K
Sbjct: 561 LTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSK 620

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A ++   M   G+ P+ + YNS++ GY +++ +++A  ++  M+  G     VT
Sbjct: 621 IGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVT 680

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
           +N L+ GL   G+TD A+ LF+EM +K  +   +++Y  LI G  K G++
Sbjct: 681 FNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRV 730



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/306 (27%), Positives = 157/306 (51%), Gaps = 10/306 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + +TG  P+  +  + +  LC++  I++A   F ++  MG   +I ++N+ + G   ID+
Sbjct: 11  MHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDK 70

Query: 189 TDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D  +K ++ +I++G          LI  FC  G+   G+ LL Q L+    P+   +  
Sbjct: 71  MDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKR-FRPDVFLYTS 129

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           +I  +C+  +     ++L  M+A    PD   Y  +I+ LCK  +  EAY +F  +++ G
Sbjct: 130 VIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG 189

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
            + D V + T+I  L   G L +A +++ EMI +G  P     +S+I   C+   ++EA 
Sbjct: 190 CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEAN 249

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
            +++ ++ K    + V YN+L+ G C  GR D+   L  +M +   F D+ TYN L+ G+
Sbjct: 250 EIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGF 309

Query: 420 CKEGKI 425
            +  ++
Sbjct: 310 SRANRL 315



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 18/334 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L      A     A++    L S G  PN  +    IQ L ++  +EEA   
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
           F +  +      + ++ + + G     R D   +L+  L  +G          +I     
Sbjct: 357 FDEALD------VISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLK 410

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++ +G +    +     VP  T +  +I   C+ +      ++   MV +   PD  T
Sbjct: 411 AGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 470

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G  K+ K  EA ++ + +  +G  P  V Y +++HG CK+  + +A+++  +M 
Sbjct: 471 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMR 530

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +G  P  + + S++  Y      EEA ++  EM  +G     + Y +LI  L   GR  
Sbjct: 531 ERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVP 590

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA H+F+ M +KG   D +TY T+IQ + K G +
Sbjct: 591 EARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV 624



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 107/211 (50%), Gaps = 1/211 (0%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + E  + L+++   GL+P+    N +++  C+ +   +  EL   M +    P   +Y  
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VI+GL    K  EAY+ FN + + G  PD + +TT+IHG CK G       M      K 
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQ-PQVGHMLLNQALKR 119

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             P+ + Y S+IHGYC+  +L+   ++ +EML  G       Y  LI  LC  GR DEAY
Sbjct: 120 FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAY 179

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LFE M + G   D +T+ TLI+     GK+
Sbjct: 180 ELFERMRKSGCLGDYVTFMTLIEALSNHGKL 210



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 155/329 (47%), Gaps = 11/329 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+CN++ + L +AR    A++    + S G  P   S    I  L     ++EA
Sbjct: 15  GLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEA 74

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------DLIESGYLIQAF 209
           +  F+ + + G    +  + + + G  K  +  +   L +        D+     +I  +
Sbjct: 75  YKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFRPDVFLYTSVIHGY 134

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G +  G+++L ++L  G +P+  A+  LI   C+        EL   M       D 
Sbjct: 135 CKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDY 194

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            T+  +I  L    K  EA  ++ ++ ERGY P   +  ++I  LCK G + +A +++  
Sbjct: 195 VTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQT 254

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           ++ K +  +   YNS++ GYC++  +++  +L  +M++        TYN L+AG     R
Sbjct: 255 VVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANR 314

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            D+A  LF+ ++  G   +  TY T+IQG
Sbjct: 315 LDDALELFKLLSSYGCKPNAATYTTIIQG 343



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 139/286 (48%), Gaps = 10/286 (3%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------- 203
           G  EEA+   +++   G    +  + S +       R      ++  +IE G        
Sbjct: 552 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 611

Query: 204 -YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +IQ F   G V    E+L  + + G+ P+  A+N L+  + + +   +   +   MVA
Sbjct: 612 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 671

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT-VMYTTVIHGLCKMGWLG 321
               P+  T+  +++GL K  K   A+ +F ++ E+  VP T V YT +I GL K G + 
Sbjct: 672 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVS 731

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A   + EMI +G++P  +TY S+I+   +   + EAK+L ++M+  G       Y+ LI
Sbjct: 732 EAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 791

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            GL      D A+ +F+EM ++G   + +TY  L +G+   G+ ++
Sbjct: 792 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 837



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 30/191 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+ V+ NVL   L +     RAF +  + L+     P   S  + I  L ++G + E
Sbjct: 673 GIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSE 732

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           AF  F ++ + G+     T+ S                          LI +    G++ 
Sbjct: 733 AFSQFQEMIDRGIIPECHTYTS--------------------------LIYSLAKAGRIP 766

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E  +L+  +++ G+ P+  A++ LI+   +        ++   M+ R  AP+  TY+ + 
Sbjct: 767 EAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLR 826

Query: 277 NGLCKSRKRLE 287
            G   + + L+
Sbjct: 827 RGFRAAGRALD 837


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 5/267 (1%)

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFCNDGKVSEG 218
           + E G    + T+ + + G     R      L   ++E G+     +I   C  G     
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             LL ++ E  +      +N +I R C+  +      L   M  +   PD  TY  +I+ 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            C+S +  +A ++  D+ ER   PD V ++ +I+ L K G + +A +++ +M+ +G+ P 
Sbjct: 121 FCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPT 180

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TYNSMI G+C+ D L +AKR+   M  K      VT++TLI G C   R D    +F 
Sbjct: 181 TITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFC 240

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EM ++GI  + +TY TLI G+C+ G +
Sbjct: 241 EMHRRGIVANTVTYTTLIHGFCQVGDL 267



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/328 (26%), Positives = 143/328 (43%), Gaps = 33/328 (10%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   L + L  E R  +    +D +   G  P        I  LC+ G  E A
Sbjct: 5   GCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGT----IINGLCKMGDTESA 60

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               SK++E  +   +  +N+                          +I   C DG    
Sbjct: 61  LNLLSKMEETHIKAHVVIYNA--------------------------IIDRLCKDGHHIH 94

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L  ++ + G+ P+   ++ +I  FC    +    +LL  M+ R   PD  T+  +IN
Sbjct: 95  AQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALIN 154

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L K  K  EA  ++ D+  RG  P T+ Y ++I G CK   L DA++M   M  K   P
Sbjct: 155 ALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSP 214

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  T++++I+GYC+   ++    +  EM  +G    TVTY TLI G C  G  D A  L 
Sbjct: 215 DVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLL 274

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             M   G+  + IT+ +++   C + ++
Sbjct: 275 NVMISSGVAPNYITFQSMLASLCSKKEL 302



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 122/230 (53%), Gaps = 4/230 (1%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    L+   C +G+V +   L+ +++E+G  P  T  N L    C+  +      LL
Sbjct: 9   DVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGL----CKMGDTESALNLL 64

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M   +       Y  +I+ LCK    + A  +F ++ ++G  PD + Y+ +I   C+ 
Sbjct: 65  SKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRS 124

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
           G   DA ++  +MI + + P+  T++++I+   +   + EA+ ++ +ML +G   TT+TY
Sbjct: 125 GRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITY 184

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           N++I G C   R ++A  + + MA K    DV+T++TLI GYCK  ++ N
Sbjct: 185 NSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDN 234



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/280 (21%), Positives = 120/280 (42%), Gaps = 19/280 (6%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFR----EFLKQQNNVLLS 89
           +E  Q Y  I   +CK+  T+      LLS +   +    +       + L +  + + +
Sbjct: 38  EEGHQPYGTIINGLCKMGDTESAL--NLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHA 95

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQ 146
              F  +H   G  PD+++ + + DS   +  +  A   L        +P+  +    I 
Sbjct: 96  QNLFTEMHDK-GIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALIN 154

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------- 197
            L + G + EA   +  +   G+F +  T+NS + G  K DR +   ++           
Sbjct: 155 ALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSP 214

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    LI  +C   +V  G E+  ++   G+V     +  LI  FC+  +     +LL
Sbjct: 215 DVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLL 274

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           + M++   AP+  T++ ++  LC  ++  +A+ +  DL++
Sbjct: 275 NVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQK 314


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/407 (25%), Positives = 171/407 (42%), Gaps = 85/407 (20%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTG-----FSPNPNSLELYIQCLCESGLIEEAF 158
           PD +S N +  SL      + A+D +          SP+  S    I    + G + +A 
Sbjct: 193 PDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC 252

Query: 159 CAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWK------LYHDLIESGYLIQAF 209
             F+++ + GV   + T+NS   AL     +D+ + V +      +  D +    +I  +
Sbjct: 253 NLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGY 312

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G   E  ++ R++   GL+P+   F+  +S  C+        E+   M  +   PD 
Sbjct: 313 SCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDI 372

Query: 270 FTYEEVING--------------------------------LCKSRKRL---EAYRVFND 294
            +Y  +++G                                +    KR    EA  VF +
Sbjct: 373 VSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTE 432

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           ++ +G  P+ V Y+T+I   C+MG L DA + + +MI  G+ PN   Y+S+IHG+C   +
Sbjct: 433 MQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGD 492

Query: 355 LEEAKRLHKEMLDKGYGE------------------------------------TTVTYN 378
           L +AK    EM+ KG                                       T VT+N
Sbjct: 493 LVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFN 552

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +LI G CL G+ ++A+ + + M   GI  DV+T NTL+ GYCK GKI
Sbjct: 553 SLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKI 599



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 155/333 (46%), Gaps = 15/333 (4%)

Query: 110 NVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF-CAFSKLK 165
            +L D    AR   +   F   L   G          +++CLC +   +EA      ++ 
Sbjct: 128 GILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHRMS 187

Query: 166 EMGVFGSIKTWNSALLGCIKIDRT----DLVWKLYH-------DLIESGYLIQAFCNDGK 214
           E+       ++N+ +       R+    D+V ++         D++    +I  F   G+
Sbjct: 188 ELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGE 247

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           VS+   L  ++++ G+VP+   +N ++   C+ +   +   +L  MV +   PD  TY  
Sbjct: 248 VSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNA 307

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+G   S    E+ ++F  +  +G +PDTV +++ +  LCK G   DA +++  M  KG
Sbjct: 308 IIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKG 367

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
            +P+  +Y+ ++HGY       +   L   M DKG        N LI+     G  DEA 
Sbjct: 368 HMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAM 427

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +F EM  +G+  +V+TY+TLI  +C+ G++ +
Sbjct: 428 LVFTEMQGQGVRPNVVTYSTLISAFCRMGRLAD 460



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 153/337 (45%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+ N +      +  +K +      + S G  P+  +   ++  LC+ G  ++A
Sbjct: 297 GVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRSKDA 356

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  +   G    I +++  L G     R   +  L+H + + G          LI A
Sbjct: 357 EEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKGIVSNCHCINILISA 416

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G + E   +  ++   G+ P    ++ LIS FC         E    M++    P+
Sbjct: 417 HAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIGIEPN 476

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              Y  +I+G C     ++A    +++  +G + P+ V ++++IH LC  G + DA+ ++
Sbjct: 477 TAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVF 536

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             +IH G  P   T+NS+I GYC +  +E+A  +   M+  G     VT NTL++G C  
Sbjct: 537 NLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKS 596

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G+ D+   LF EM  K +    +TYN ++ G  + G+
Sbjct: 597 GKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGR 633



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 105/434 (24%), Positives = 184/434 (42%), Gaps = 29/434 (6%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQT 60
           M +A F    +LRQ       P+    N  I        + E AK   K+T       + 
Sbjct: 283 MDKAEF----VLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMT------SKG 332

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
           L+ D  +F+      F   L +      +   FQ++ +  G  PD+VS ++L        
Sbjct: 333 LIPDTVTFSS-----FMSSLCKHGRSKDAEEIFQYMTTK-GHMPDIVSYSILLHGYATEG 386

Query: 121 AFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
            F    +   S    G   N + + + I    + G+++EA   F++++  GV  ++ T++
Sbjct: 387 RFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYS 446

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLED 228
           + +    ++ R     + +  +I  G          LI  FC  G + +  E + +++  
Sbjct: 447 TLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSK 506

Query: 229 GL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           GL  P    F+ +I   C +       ++ + ++     P   T+  +I+G C   K  +
Sbjct: 507 GLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEK 566

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+ V + +   G  PD V   T++ G CK G + D   ++ EM+HK + P   TYN ++ 
Sbjct: 567 AFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLD 626

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           G  R      AK++  EM+D G      TY  L+ GLC +  TDEA  LF ++       
Sbjct: 627 GLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKF 686

Query: 408 DVITYNTLIQGYCK 421
           D+   NT+I    K
Sbjct: 687 DITILNTMINALYK 700



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 144/363 (39%), Gaps = 52/363 (14%)

Query: 116 LVEARAFKVAMDF-------LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           L+ A A +  MD        +   G  PN  +    I   C  G + +A   FS++  +G
Sbjct: 413 LISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMISIG 472

Query: 169 VFGSIKTWNSALLG-CIKIDR-------TDLVWKLYH--DLIESGYLIQAFCNDGKVSEG 218
           +  +   ++S + G C+  D        ++++ K  H  +++    +I + C +G+V + 
Sbjct: 473 IEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRVMDA 532

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++   V+  G  P    FN LI  +C      +   +L  MV+    PD  T   +++G
Sbjct: 533 QDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSG 592

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
            CKS K  +   +F ++  +   P TV Y  V+ GL + G    A+KM+ EMI  G   +
Sbjct: 593 YCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVD 652

Query: 339 EYTYNSMIHGYCRID-----------------------------------NLEEAKRLHK 363
             TY  ++ G CR D                                     EEA  L  
Sbjct: 653 IDTYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFA 712

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +   G      TY  +I  L   G  +EA  +F  M + G        N +I+   ++G
Sbjct: 713 AISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKG 772

Query: 424 KIV 426
            IV
Sbjct: 773 DIV 775



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 135/318 (42%), Gaps = 11/318 (3%)

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           LV+A+ F   M  +      PN       I  LC  G + +A   F+ +  +G   +I T
Sbjct: 493 LVKAKEFISEM--MSKGLHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVT 550

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVL 226
           +NS + G   + + +  + +   ++  G          L+  +C  GK+ +G  L R++L
Sbjct: 551 FNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREML 610

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
              + P    +N ++             ++ H M+    A D  TY+ ++ GLC++    
Sbjct: 611 HKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTD 670

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA  +F+ L       D  +  T+I+ L K+    +A  ++  +   GL+PN  TY  MI
Sbjct: 671 EAITLFHKLGAMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGLVPNVSTYGVMI 730

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
               +  ++EEA  +   M   G   ++   N +I  L   G   +A +   ++    I 
Sbjct: 731 RNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIIS 790

Query: 407 RDVITYNTLIQGYCKEGK 424
            +  T + L+  +  +GK
Sbjct: 791 LEASTTSLLMSLFSSKGK 808



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 1/85 (1%)

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH-LFEE 399
           TY  ++   CR    +        +L  G    T+   T +  LC   RTDEA   L   
Sbjct: 126 TYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDEAVDVLLHR 185

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGK 424
           M++     D I+YNT+I+  C + +
Sbjct: 186 MSELSCVPDAISYNTVIKSLCGDSR 210


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 146/296 (49%), Gaps = 9/296 (3%)

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           NP+  +L I+     G++ +A   F  +   G   S+ T N  L   +K  +   VW  +
Sbjct: 97  NPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFF 156

Query: 197 HDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
            +++             LI   C +GK+ +   LL+++ E G VP    +N +++ +C+K
Sbjct: 157 KEMLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKK 216

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
             +    EL+  M ++    D  TY  +++ LCK+ +  + Y +   +++R   P+ + Y
Sbjct: 217 GRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITY 276

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
            ++I+G  K G +G A +++ EM    LLPN  TYN++I G+C   N E+A  + + M  
Sbjct: 277 NSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEA 336

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G     V+Y+ L+ GLC H + + +  + E M   G+    I Y  +I G C+ G
Sbjct: 337 TGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNG 392



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 151/330 (45%), Gaps = 29/330 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           GF+P + +CN+L   LV+ R       F     +    P+ ++  + I  LC  G +++A
Sbjct: 128 GFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILINVLCVEGKLKKA 187

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                K++E G   S+ T+N           T L W               +C  G+   
Sbjct: 188 GYLLKKMEESGYVPSVVTYN-----------TVLNW---------------YCKKGRYKA 221

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             EL+ Q+   G+  +   +N L+   C+     +   LL  M  R  +P+  TY  +IN
Sbjct: 222 ALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIIN 281

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K  K   A R+F ++     +P+ V Y  +I G C  G    A  +   M   G  P
Sbjct: 282 GFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKP 341

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NE +Y+++++G CR    E +K + + M   G     + Y  +I GLC +G  +E+  L 
Sbjct: 342 NEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAMIDGLCRNGLLNESVKLL 401

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           ++M + G+  DV+T++ LI G+C+ GKI N
Sbjct: 402 DKMLKDGVVPDVVTFSVLINGFCRVGKIKN 431



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 157/349 (44%), Gaps = 30/349 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNP 138
           ++  +  + R FQ + S     P+ V+ N L D       F+ A+   + +++TG  PN 
Sbjct: 285 KEGKIGAATRIFQEM-SMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNE 343

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            S    +  LC     E +     +++           N  ++GCI              
Sbjct: 344 VSYSALLNGLCRHAKFELSKSILERMR----------MNGMIVGCIAYTA---------- 383

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I   C +G ++E  +LL ++L+DG+VP+   F+ LI+ FC       V E++ 
Sbjct: 384 ------MIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIIC 437

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M     AP++  Y  +I   CK+   +EA++V+  +   GY  +  +   ++  LCK G
Sbjct: 438 KMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDG 497

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +G A   +  M   G +PN  T++ +I+GY    N  +A  +  EM+  G+  +  TY 
Sbjct: 498 KVGVAEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYG 557

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            L+  LC  G+  EA  L +++       D +TYNT++    K G + +
Sbjct: 558 GLLKALCRAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTD 606



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 168/361 (46%), Gaps = 13/361 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSP 136
           L ++  ++ ++ F+  L      SP+ V      D L  A   K A+ F   ++  G   
Sbjct: 633 LIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCA 692

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           +  +  + +      G + +A   F+ +   + +  S+ T+N  L G  K         L
Sbjct: 693 DLIATNVILNGYSRMGKMAKAGDIFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNL 752

Query: 196 YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           Y+ ++ +G          LI  FC    +  G +LL+++L DG+  +   FN LI ++CE
Sbjct: 753 YNIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCE 812

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
               G+  +L++ M   +  PD  T++ +I+ L +     E++ + +++ ERG +PD   
Sbjct: 813 TDEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQ 872

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  +++ +C+MG +  A K+  EM   G+   +   ++++ G  +   +EEAK +   ML
Sbjct: 873 YIALVNRMCRMGHIHGAFKLKDEMEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFML 932

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            K    T  T+ TL+   C +    EA  L + M    +  DVI YN LI G C +G + 
Sbjct: 933 RKSLIPTIATFTTLMHMFCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVA 992

Query: 427 N 427
           +
Sbjct: 993 S 993



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/332 (25%), Positives = 144/332 (43%), Gaps = 36/332 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ +VL +        K   +    +   G +PN       I   C++G + EA
Sbjct: 408 GVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEA 467

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           F  +  +  +G       +++    C                     L+ + C DGKV  
Sbjct: 468 FKVYVAMSRIG-------YDANCFIC-------------------NVLVSSLCKDGKVGV 501

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
                  + + G VP +  F+ +I+ +    N  +   +   M+     P +FTY  ++ 
Sbjct: 502 AEYFFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLK 561

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
            LC++ K  EA R+ + L    Y+P   DTV Y T++    K G L DA  ++ EM+ + 
Sbjct: 562 ALCRAGKFKEAKRLLDKLH---YIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRN 618

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGRTDEA 393
           +LP+ YTY  +  G  R   +  A   +  +L KG      V Y T + GL   G++  A
Sbjct: 619 VLPDSYTYAIIFAGLIRRGKMVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAA 678

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  E+M + G+  D+I  N ++ GY + GK+
Sbjct: 679 LYFCEDMEKNGLCADLIATNVILNGYSRMGKM 710



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 94/191 (49%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           + F+ LI  +  +   G   E    M  R   P  +T   ++  L K RK    +  F +
Sbjct: 99  SVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKE 158

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +  R   PD   +  +I+ LC  G L  A  +  +M   G +P+  TYN++++ YC+   
Sbjct: 159 MLARRVCPDVSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVLNWYCKKGR 218

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            + A  L  +M  KG      TYN L+  LC + R+ + Y L ++M ++ I  + ITYN+
Sbjct: 219 YKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNS 278

Query: 415 LIQGYCKEGKI 425
           +I G+ KEGKI
Sbjct: 279 IINGFVKEGKI 289



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 124/326 (38%), Gaps = 48/326 (14%)

Query: 92   FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCL 148
             F  + S    SP L + N+L     + +      +  +    TG  P+  +    I   
Sbjct: 716  IFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGF 775

Query: 149  CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT----DLV-----WKLYHDL 199
            C+S +++       K+   GV     T+N  ++   + D      DLV     + ++ D+
Sbjct: 776  CKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDM 835

Query: 200  IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 +I        V E + LL ++LE G +P+   +  L++R C   +     +L   
Sbjct: 836  TTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDE 895

Query: 260  MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP----------------- 302
            M A   +  +     ++ GL K  K  EA  V + +  +  +P                 
Sbjct: 896  MEALGISSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHMFCRNES 955

Query: 303  ------------------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
                              D + Y  +I GLC  G +  A K++ E+  +GL PN  TY  
Sbjct: 956  LVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPNMTTYCI 1015

Query: 345  MIHGYCRID-NLEEAKRLHKEMLDKG 369
            +I      D +L + + L K++ ++G
Sbjct: 1016 LIDAIFTNDISLAKGEVLLKDLQERG 1041



 Score = 39.7 bits (91), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 41/88 (46%)

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N   ++ +I  Y R   + +A    + M  +G+  +  T N L+  L    +    +  F
Sbjct: 97  NPSVFDLLIRVYLREGMVGDALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFF 156

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +EM  + +  DV T+N LI   C EGK+
Sbjct: 157 KEMLARRVCPDVSTFNILINVLCVEGKL 184


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 142/293 (48%), Gaps = 9/293 (3%)

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
           +    Y+Q  C+   + +A     +++  G    + T+N  + G  K  R D   K  ++
Sbjct: 83  SGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 142

Query: 199 L---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +         I    ++++ C+ G+  +  +LL  +L  G  P    FN LI+  C +  
Sbjct: 143 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 202

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
            GR  ++L  M      P++ +Y  +++G CK +K   A    + +  RG  PD V Y T
Sbjct: 203 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 262

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           ++  LCK G +  A ++  ++  KG  P   TYN++I G  ++   E A +L  EM  KG
Sbjct: 263 LLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKG 322

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
                +TY++L++GL   G+ DEA   F ++   GI  + ITYN+++ G CK 
Sbjct: 323 LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKS 375



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 166/369 (44%), Gaps = 33/369 (8%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           +QTL    P F+ +   F+ +   +++ V  +++    + +  G  PD+V+ NVL + + 
Sbjct: 73  QQTLF---PCFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNK-GSKPDVVTYNVLINGIC 128

Query: 118 EARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +      A+ FL+   S G  PN  +  + ++ +C +G   +A    S +   G   S+ 
Sbjct: 129 KEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVV 188

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           T+N                           LI   C  G +    ++L ++   G  P +
Sbjct: 189 TFN--------------------------ILINFLCRQGLLGRAIDILEKMPMHGCTPNS 222

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            ++N L+  FC++K   R  E L  MV+R   PD  TY  ++  LCK  K   A  + N 
Sbjct: 223 LSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 282

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           L  +G  P  + Y TVI GL K+G    A K+  EM  KGL P+  TY+S++ G  R   
Sbjct: 283 LSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGK 342

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           ++EA +   ++   G     +TYN+++ GLC   +TD A      M  K       TY  
Sbjct: 343 VDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTI 402

Query: 415 LIQGYCKEG 423
           LI+G   EG
Sbjct: 403 LIEGIAYEG 411



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/221 (28%), Positives = 115/221 (52%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           + +Q  C +  V +  +LL ++   G  P+   +N LI+  C++       + L+ M + 
Sbjct: 87  FYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSY 146

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  T+  ++  +C + + ++A ++ +D+  +G  P  V +  +I+ LC+ G LG A
Sbjct: 147 GCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRA 206

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +  +M   G  PN  +YN ++HG+C+   ++ A      M+ +G     VTYNTL+  
Sbjct: 207 IDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTA 266

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LC  G+ D A  +  +++ KG    +ITYNT+I G  K GK
Sbjct: 267 LCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGK 307



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 114/228 (50%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++    LI   C +G++ E  + L  +   G  P     N ++   C    +    +LL
Sbjct: 116 DVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLL 175

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M+ +  +P   T+  +IN LC+      A  +   +   G  P+++ Y  ++HG CK 
Sbjct: 176 SDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKE 235

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A +    M+ +G  P+  TYN+++   C+   ++ A  +  ++  KG     +TY
Sbjct: 236 KKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY 295

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           NT+I GL   G+T+ A  L +EM +KG+  D+ITY++L+ G  +EGK+
Sbjct: 296 NTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKV 343



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 100/191 (52%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           + F+  +   C++   G+  +LL  M  +   PD  TY  +ING+CK  +  EA +  N+
Sbjct: 83  SGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNN 142

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +   G  P+ + +  ++  +C  G   DA K+  +M+ KG  P+  T+N +I+  CR   
Sbjct: 143 MPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGL 202

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L  A  + ++M   G    +++YN L+ G C   + D A    + M  +G + D++TYNT
Sbjct: 203 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNT 262

Query: 415 LIQGYCKEGKI 425
           L+   CK+GK+
Sbjct: 263 LLTALCKDGKV 273


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ +   VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 29/333 (8%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
            I  A   F  + +  +  S+ ++N+ + G IK+                          
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKL-------------------------- 184

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G + EG+ L   +   G+ P+   ++ LI+  C++      +EL   M+     P+  T+
Sbjct: 185 GDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTF 244

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G CK+ +   A  ++  +  +   PD + Y T+I+GLCK G L  A+ +  EM  
Sbjct: 245 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KGL P++ TY ++I G C+  +LE A +  K M+ +      V Y  LI+GLC  GR+ +
Sbjct: 305 KGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A  +  EM   G+  ++ TY  +I  +CK+G +
Sbjct: 365 AEKMLREMLSVGLKPEIGTYTMIINEFCKKGDV 397


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +++ N L +  +E +        +  ++      N  +  + I+    S  IEEA
Sbjct: 222 GFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEA 281

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F ++ + G+   +  + S +    K       + L+ ++ E          G LI  
Sbjct: 282 EKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALING 341

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++     ++  +   G+      FN L+  +C+K        L + M  +    D
Sbjct: 342 ACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEID 401

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT   + +G C+S +R EA R+   ++ERG  P+ V ++ +I   CK     +AR+++ 
Sbjct: 402 AFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFK 461

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  P+  TYN+ I  YC+   +EEA +L  EM ++G    T TY +LI G    G
Sbjct: 462 VMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASG 521

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             D A  LF EM Q G+ R+V+TY  +I G  K+G+
Sbjct: 522 NVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGR 557



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 196/443 (44%), Gaps = 23/443 (5%)

Query: 3   RAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWE--QT 60
           R+       LRQNP   + P+     +        + + E+   +  I      W   + 
Sbjct: 49  RSCLRFFDFLRQNPS--RKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVER 106

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHY------GFSPDLVSCNVLFD 114
           ++S I    FN+P    +F      V +  R F      +      GF  D  SC     
Sbjct: 107 IVSSIGG-EFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLL 165

Query: 115 SLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           +L  +   ++ ++FL     +G      S    +  LC+ G +  A     +L   G   
Sbjct: 166 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 225

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELL 222
           S+ T+N+ L G I+I     V ++          +++     LI+ +    K+ E  +L 
Sbjct: 226 SVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF 285

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++L+ G+ P+   +  +I+  C+  N  R   L   M  R   P+ +TY  +ING CK+
Sbjct: 286 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 345

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            +   A  + ND++ +G   + V++ T++ G CK G + +A ++   M  KG   + +T 
Sbjct: 346 GEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTC 405

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N +  G+CR +  EEAKRL   M ++G     V+++ LI   C      EA  LF+ M +
Sbjct: 406 NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEK 465

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KG    V+TYN  I+ YCK+GK+
Sbjct: 466 KGKAPSVVTYNAFIERYCKKGKM 488



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 158/357 (44%), Gaps = 22/357 (6%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN 139
           L ++N V  ++  +  L   Y  S  +     LFD +++              G  P+  
Sbjct: 252 LMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLK-------------KGIEPDVY 298

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                I   C+ G ++ AF  F ++ E  +  +  T+ + + G  K         + +D+
Sbjct: 299 IYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDM 358

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G          L+  +C  G + E   L   + + G   +    N + S FC     
Sbjct: 359 QSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRR 418

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                LL TM  R  AP+  ++  +I+  CK +   EA R+F  ++++G  P  V Y   
Sbjct: 419 EEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 478

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I   CK G + +A K+  EM  +GL+P+ YTY S+I G     N++ A  L  EM   G 
Sbjct: 479 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGL 538

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
               VTY  +I+GL   GR DEA+ L++EM ++GI  D   Y++LI    K G +V+
Sbjct: 539 NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVS 595


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 156/332 (46%), Gaps = 14/332 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCLCESGLIEEAFCAF 161
           P+  +CN +   L   R   +     D     P PN  +  + I  LC+ G + EA   F
Sbjct: 167 PNTRTCNHILLRLARNRQGGLVRRLFD---LLPVPNVFTFNIVIDFLCKEGELVEARALF 223

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCND 212
            ++K MG    + T+NS + G  K    + V +L  ++ +SG          LI  F   
Sbjct: 224 VRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKF 283

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G++ + Y    ++   G+V     F+  +  FC++       +L   M  R   P+ FTY
Sbjct: 284 GRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTY 343

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +++G CK+ +  +A  + +++  +G VP+ V YT ++ GLCK G + +A  +   M  
Sbjct: 344 TSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMER 403

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G+  NE  Y ++IHG+   +N E A  L  +M +KG       Y TLI GLC   + DE
Sbjct: 404 GGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDE 463

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           A  L  +MA  G+  + + Y T++    K GK
Sbjct: 464 AKSLLHKMAGCGLRPNTVIYTTIMDALFKAGK 495



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 103/379 (27%), Positives = 168/379 (44%), Gaps = 18/379 (4%)

Query: 59  QTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE 118
           Q +++++ +F+     F +E L Q+     +++ F  +    G  P+  +   L D   +
Sbjct: 299 QGVVANVVTFSTFVDAFCKEGLVQE-----AMKLFAQMRVR-GMMPNEFTYTSLVDGTCK 352

Query: 119 ARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           A     A+  LD     G  PN  +  + +  LC+ G + EA    S ++  GV  +   
Sbjct: 353 AGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELL 412

Query: 176 WNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVL 226
           + + + G    + ++    L +         D+   G LI   C D KV E   LL ++ 
Sbjct: 413 YTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMA 472

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             GL P    +  ++    +         LLH ++     P+  TY  +I+GLCK+    
Sbjct: 473 GCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSIS 532

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA   FN ++E G  P+   YT +I G CK+G L  A  +  EMI KG+  ++  Y S+I
Sbjct: 533 EAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLI 592

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            GY +  NL++A  L  +M++ G       Y   I+G C      EA  +  EM   GI 
Sbjct: 593 DGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGIT 652

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D   YN LI+ Y K G +
Sbjct: 653 PDKTVYNCLIRKYQKLGNM 671



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 9/227 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC+   ++EA     K+   G+  +   + + +    K  +      L H +++SG+   
Sbjct: 455 LCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSGFQPN 514

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C  G +SE      ++ E GL P   A+  LI  FC+  +  +   L++
Sbjct: 515 VVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMN 574

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ +  + D   Y  +I+G  K     +A+ +   + E G   D   YT  I G C M 
Sbjct: 575 EMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMN 634

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            + +AR +  EMI  G+ P++  YN +I  Y ++ N+EEA  L  EM
Sbjct: 635 MMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEM 681



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 14/210 (6%)

Query: 101 GFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+ V    + D+L     E+ A  +    LDS GF PN  +    I  LC++G I E
Sbjct: 475 GLRPNTVIYTTIMDALFKAGKESEAVALLHKILDS-GFQPNVVTYCALIDGLCKAGSISE 533

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F+K++E+G+  +++ + + + G  KI   +    L +++I+ G          LI 
Sbjct: 534 AISHFNKMRELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLID 593

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +     + + + L  +++E GL  +   +   IS FC          +L  M+     P
Sbjct: 594 GYMKQANLQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITP 653

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           D   Y  +I    K     EA  + N+++ 
Sbjct: 654 DKTVYNCLIRKYQKLGNMEEASSLQNEMES 683


>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 168/359 (46%), Gaps = 15/359 (4%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
           + N +  ++RF + +    G  P++V+ N +     +    + A++ L+   S G  P+ 
Sbjct: 289 RANRLEKALRFLERMQV-VGIVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDK 347

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
            S    +  LC+   I E      K+ KE G+     T+N+ +    K D  D       
Sbjct: 348 VSYYTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLK 407

Query: 198 DLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA-FNKLISRFCEK 247
           D  E G+         ++ A C +G++SE  +L+ ++L  G  P +   +  +++ FC  
Sbjct: 408 DAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRL 467

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
               +  +LL  M      P+  +Y  ++NG+C++ K LEA  + N  +E  + P+++ Y
Sbjct: 468 GEVDKAKKLLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITY 527

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           + ++HGL + G L +A  +  EM+ KG  P     N ++   CR     EA++  +E L+
Sbjct: 528 SVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLN 587

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           KG     V + T+I G C +   D A  + ++M       DV TY TL+    K+G+I 
Sbjct: 588 KGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIA 646



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 110/223 (49%), Gaps = 2/223 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           ++ ++   G++ +  ++L  +   G+ P     N  I  F       +    L  M    
Sbjct: 248 VMVSYSRAGQLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVG 307

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +I G C   +  EA  +  D+  +G +PD V Y T++  LCK   + + R
Sbjct: 308 IVPNVVTYNCMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVR 367

Query: 325 KMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +  +M  + GL+P++ TYN++IH   + D+ +EA    K+  +KG+    + Y+ ++  
Sbjct: 368 DLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHA 427

Query: 384 LCLHGRTDEAYHLFEEMAQKG-IFRDVITYNTLIQGYCKEGKI 425
           LC  GR  EA  L  EM  KG    DV+TY  ++ G+C+ G++
Sbjct: 428 LCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEV 470



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 149/360 (41%), Gaps = 15/360 (4%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFS 135
           +L ++  ++      + +   +G  PD V+ N L   L +      A+ FL      GF 
Sbjct: 356 YLCKEKRIVEVRDLMKKMAKEHGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFR 415

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWK 194
            +       +  LC+ G + EA    +++   G     + T+ + + G  ++   D   K
Sbjct: 416 IDKLGYSAIVHALCKEGRMSEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGEVDKAKK 475

Query: 195 LYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           L   +   G+         L+   C  GK  E  E++    E    P +  ++ ++    
Sbjct: 476 LLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLR 535

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
            +       +++  MV +   P       ++  LC+  +  EA +   +   +G   + V
Sbjct: 536 REGKLSEACDVVREMVLKGFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVV 595

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            +TTVIHG C+   L  A  +  +M       + +TY +++    +   + EA  L K+M
Sbjct: 596 NFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYTTLVDTLGKKGRIAEATELMKKM 655

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L KG   T VTY T+I   C  G+ D+   + E+M  +   R +  YN +I+  C  GK+
Sbjct: 656 LHKGIDPTPVTYRTVIHRYCQMGKVDDLVAILEKMISRQKCRTI--YNQVIEKLCVLGKL 713



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 106/238 (44%), Gaps = 1/238 (0%)

Query: 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            D  W+  HD +    +++             +L  +   G+     AF++++  +    
Sbjct: 197 ADRQWRYRHDPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAG 256

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
                 ++L  M      P+       I+   ++ +  +A R    ++  G VP+ V Y 
Sbjct: 257 QLRDALKVLTLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 316

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-D 367
            +I G C +  + +A ++  +M  KG LP++ +Y +++   C+   + E + L K+M  +
Sbjct: 317 CMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 376

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            G     VTYNTLI  L  H   DEA    ++  +KG   D + Y+ ++   CKEG++
Sbjct: 377 HGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRM 434



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 51/159 (32%), Positives = 76/159 (47%)

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  ++  L K++    + RV   +K RG       ++ V+    + G L DA K+ 
Sbjct: 206 DPMVYYSMLEVLSKTKLCQGSRRVLVLMKRRGIYRTPEAFSRVMVSYSRAGQLRDALKVL 265

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M   G+ PN    N+ I  + R + LE+A R  + M   G     VTYN +I G C  
Sbjct: 266 TLMQRAGVEPNLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYNCMIRGYCDL 325

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            R +EA  L E+M  KG   D ++Y T++   CKE +IV
Sbjct: 326 HRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIV 364



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 55/292 (18%), Positives = 103/292 (35%), Gaps = 45/292 (15%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELY 144
           L  R    +   + +SP+ ++ +V+   L        A D +      GF P P  + L 
Sbjct: 506 LEAREMMNMSEEHWWSPNSITYSVIMHGLRREGKLSEACDVVREMVLKGFFPGPVEINLL 565

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL--------- 195
           +Q LC  G   EA     +    G   ++  + + + G  + D  D    +         
Sbjct: 566 LQSLCRDGRTHEARKFMEECLNKGCAINVVNFTTVIHGFCQNDELDAALSVLDDMYLINK 625

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE---------------------- 233
           + D+     L+      G+++E  EL++++L  G+ P                       
Sbjct: 626 HADVFTYTTLVDTLGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMGKVDDLVA 685

Query: 234 -----------NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
                       T +N++I + C          LL  ++      D  T   ++ G  K 
Sbjct: 686 ILEKMISRQKCRTIYNQVIEKLCVLGKLEEADTLLGKVLRTASRSDAKTCYALMEGYLKK 745

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
              L AY+V   +  R  +PD  M   +   L   G + +A K+   ++ +G
Sbjct: 746 GVPLSAYKVACRMFNRNLIPDVKMCEKLSKRLVLKGKVDEADKLMLRLVERG 797


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/336 (27%), Positives = 155/336 (46%), Gaps = 12/336 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEAR---AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF P +++ N L +  +E +        +  ++      N  +  + I+    S  IEEA
Sbjct: 218 GFKPSVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEA 277

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
              F ++ + G+   +  + S +    K       + L+ ++ E          G LI  
Sbjct: 278 EKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALING 337

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G++     ++  +   G+      FN L+  +C+K        L + M  +    D
Sbjct: 338 ACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEID 397

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FT   + +G C+S +R EA R+   ++ERG  P+ V ++ +I   CK     +AR+++ 
Sbjct: 398 AFTCNIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFK 457

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  P+  TYN+ I  YC+   +EEA +L  EM ++G    T TY +LI G    G
Sbjct: 458 VMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASG 517

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             D A  LF EM Q G+ R+V+TY  +I G  K+G+
Sbjct: 518 NVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGR 553



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/443 (25%), Positives = 196/443 (44%), Gaps = 23/443 (5%)

Query: 3   RAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWE--QT 60
           R+       LRQNP   + P+     +        + + E+   +  I      W   + 
Sbjct: 45  RSCLRFFDFLRQNPS--RKPDLPAHLILFSRLYRARKFAEMKNVLKFIVNDGNLWSNVER 102

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHY------GFSPDLVSCNVLFD 114
           ++S I    FN+P    +F      V +  R F      +      GF  D  SC     
Sbjct: 103 IVSSIGG-EFNEPSIVEKFCDMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLL 161

Query: 115 SLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           +L  +   ++ ++FL     +G      S    +  LC+ G +  A     +L   G   
Sbjct: 162 ALKRSGNMELCVEFLRQMVDSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKP 221

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELL 222
           S+ T+N+ L G I+I     V ++          +++     LI+ +    K+ E  +L 
Sbjct: 222 SVITYNTLLNGYIEIKDVGGVNEILSLMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLF 281

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
            ++L+ G+ P+   +  +I+  C+  N  R   L   M  R   P+ +TY  +ING CK+
Sbjct: 282 DEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKA 341

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            +   A  + ND++ +G   + V++ T++ G CK G + +A ++   M  KG   + +T 
Sbjct: 342 GEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTC 401

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N +  G+CR +  EEAKRL   M ++G     V+++ LI   C      EA  LF+ M +
Sbjct: 402 NIIASGFCRSNRREEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEK 461

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KG    V+TYN  I+ YCK+GK+
Sbjct: 462 KGKAPSVVTYNAFIERYCKKGKM 484



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 158/357 (44%), Gaps = 22/357 (6%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN 139
           L ++N V  ++  +  L   Y  S  +     LFD +++              G  P+  
Sbjct: 248 LMEKNVVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLK-------------KGIEPDVY 294

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
                I   C+ G ++ AF  F ++ E  +  +  T+ + + G  K         + +D+
Sbjct: 295 IYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDM 354

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
              G          L+  +C  G + E   L   + + G   +    N + S FC     
Sbjct: 355 QSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRR 414

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                LL TM  R  AP+  ++  +I+  CK +   EA R+F  ++++G  P  V Y   
Sbjct: 415 EEAKRLLLTMEERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAF 474

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I   CK G + +A K+  EM  +GL+P+ YTY S+I G     N++ A  L  EM   G 
Sbjct: 475 IERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGL 534

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
               VTY  +I+GL   GR DEA+ L++EM ++GI  D   Y++LI    K G +V+
Sbjct: 535 NRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPLVS 591


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 152/313 (48%), Gaps = 29/313 (9%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
            SP++V+ N +  +L +A+    AM+ L +   +G  P+  +    +   C SG  +EA 
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 171

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               K++  GV   + T+NS                          L+   C +G+ +E 
Sbjct: 172 VFLKKMRSDGVEPDVVTYNS--------------------------LMDYLCKNGRCTEA 205

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++   + + GL P+ T +  L+  +  K     +  LL  MV     P+++ +  ++  
Sbjct: 206 RKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 265

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             K  K  EA  VF+ ++++G  P+ V Y TVI  LCK G + DA   + +MI +GL P+
Sbjct: 266 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPD 325

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YNS+IH  C  D  E+A+ L  EMLD+G   +T+ +N++I   C  GR  E+  LF+
Sbjct: 326 SIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFD 385

Query: 399 EMAQKGIFRDVIT 411
            M + G+  D+IT
Sbjct: 386 LMVRIGVKPDIIT 398



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 4/289 (1%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG--VFGSIKTWNSALLGCIKIDRTD--L 191
           P+  S  + +  LC+    +EA      + + G      + ++++ + G  K    D  L
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKML 108

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             ++  +++    +I A C    V +  E+L  +++ G++P+   +N ++  FC      
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPK 168

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
                L  M +    PD  TY  +++ LCK+ +  EA ++F+ + +RG  PD   Y T++
Sbjct: 169 EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G    G L +   +   M+  G+ PN Y ++ ++  Y + + +EEA  +  +M  +G  
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
              VTY T+I  LC  GR ++A   FE+M  +G+  D I YN+LI   C
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 159/337 (47%), Gaps = 21/337 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           PD+ S N+L + L +    + A++ L     D     P+  S    I     +G  +E  
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVI-----NGFFKEG- 102

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAF 209
               K+ +  +  ++ T+NS +    K    D   ++   +++SG +         +  F
Sbjct: 103 -DLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 161

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R   PD 
Sbjct: 162 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  ++ G       +E + + + +   G  P+  +++ ++    K   + +A  ++ +
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +GL PN  TY ++I   C+   +E+A    ++M+D+G    ++ YN+LI  LC+  +
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            ++A  LF EM  +GI    I +N++I  +CKEG+++
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 378



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 14/209 (6%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVIN 277
           ELLR+      +P+  ++N L++  C++       ELLH M     +  PD  +Y  VIN
Sbjct: 42  ELLRRG-----IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN 96

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K           + + ++   P+ V Y ++I  LCK   +  A ++   M+  G++P
Sbjct: 97  GFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMP 149

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYNS++HG+C     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F
Sbjct: 150 DCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIF 209

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + M ++G+  D+ TY TL+QGY  +G +V
Sbjct: 210 DSMTKRGLKPDITTYGTLLQGYATKGALV 238



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 31/133 (23%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLH------------------ 362
           DAR ++ E++ +G+ P+ ++YN +++G C  +  +EA + LH                  
Sbjct: 35  DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 363 -----------KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
                       +MLD+      VTYN++IA LC     D+A  +   M + G+  D +T
Sbjct: 94  VINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMT 153

Query: 412 YNTLIQGYCKEGK 424
           YN+++ G+C  G+
Sbjct: 154 YNSIVHGFCSSGQ 166


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 158/327 (48%), Gaps = 12/327 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +++  +L ++ +       A+  +D   S G  P+  +    I+ +C+ G+++ AF  
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEM 285

Query: 161 FSKLKEMGVFGSIKTWN---SALLGCIKIDRTD-LVWKLYHD-----LIESGYLIQAFCN 211
              L+  G    + ++N    ALL   K +  + L+ K++ +     ++    LI   C 
Sbjct: 286 VRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 345

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGK+ E   LL+ + E GL P+  +++ LI+ FC +       E L TM++    PD   
Sbjct: 346 DGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVN 405

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  V+  LCK+ K  +A  +F  L E G  P++  Y T+   L   G    A  M  EM+
Sbjct: 406 YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMM 465

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P+E TYNSMI   CR   ++EA  L  +M    +  + VTYN ++ G C   R +
Sbjct: 466 SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIE 525

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +A ++ E M   G   +  TY  LI+G
Sbjct: 526 DAINVLESMVGNGCRPNETTYTVLIEG 552



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 150/336 (44%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           FSPD V+ N++  SL       +A+  L+   S    P   +  + I+     G ++EA 
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL 248

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
               ++   G+   + T+N+ + G  K    D  +++           D+I    L++A 
Sbjct: 249 KLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRAL 308

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            N GK  EG +L+ ++  +   P    ++ LI+  C          LL  M  +   PD 
Sbjct: 309 LNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 368

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           ++Y+ +I   C+  +   A      +   G +PD V Y TV+  LCK G    A +++ +
Sbjct: 369 YSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK 428

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +   G  PN  +YN+M        +   A  +  EM+  G     +TYN++I+ LC  G 
Sbjct: 429 LGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGM 488

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEA+ L  +M        V+TYN ++ G+CK  +I
Sbjct: 489 VDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRI 524



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 150/363 (41%), Gaps = 33/363 (9%)

Query: 67  SFNFNDPLFFREFLK--QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           S  F D    + F +  +  N + S+   + +    G++PD++ C  L       R    
Sbjct: 84  SLGFRDTQMLKIFHRSCRSGNYIESLHLLETM-VRKGYNPDVILCTKLIKGFFTLRNIPK 142

Query: 125 A---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           A   M+ L+  G  P+  +    I   C+   I++A     +++         T+N    
Sbjct: 143 AVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN---- 197

Query: 182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
                                  +I + C+ GK+    ++L Q+L D   P    +  LI
Sbjct: 198 ----------------------IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILI 235

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
                +       +L+  M++R   PD FTY  +I G+CK      A+ +  +L+ +G  
Sbjct: 236 EATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCE 295

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD + Y  ++  L   G   +  K+  +M  +   PN  TY+ +I   CR   +EEA  L
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            K M +KG      +Y+ LIA  C  GR D A    E M   G   D++ YNT++   CK
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 415

Query: 422 EGK 424
            GK
Sbjct: 416 NGK 418



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 14/353 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSL 141
           N+  ++R  + L   +G  PD+ + N L +   +      A   LD   S  FSP+  + 
Sbjct: 139 NIPKAVRVMEILE-KFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + I  LC  G ++ A    ++L       ++ T+   +   +     D   KL  +++ 
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          +I+  C +G V   +E++R +   G  P+  ++N L+     +  +  
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEE 316

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +L+  M +    P+  TY  +I  LC+  K  EA  +   +KE+G  PD   Y  +I 
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C+ G L  A +    MI  G LP+   YN+++   C+    ++A  +  ++ + G   
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + +YNT+ + L   G    A H+  EM   GI  D ITYN++I   C+EG +
Sbjct: 437 NSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           RQ     L   +T   K+  R C   N+     LL TMV +   PD     ++I G    
Sbjct: 78  RQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL 137

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           R   +A RV   L++ G  PD   Y  +I+G CKM  + DA ++   M  K   P+  TY
Sbjct: 138 RNIPKAVRVMEILEKFGQ-PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N MI   C    L+ A ++  ++L      T +TY  LI    L G  DEA  L +EM  
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           +G+  D+ TYNT+I+G CKEG +
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMV 279



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 128/271 (47%), Gaps = 37/271 (13%)

Query: 191 LVWKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +V K Y+ D+I    LI+ F     + +   ++ ++LE    P+  A+N LI+ FC+   
Sbjct: 115 MVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNALINGFCKMNR 173

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               + +L  M +++ +PD  TY  +I  LC   K   A +V N L      P  + YT 
Sbjct: 174 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTI 233

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----------IDNL---- 355
           +I      G + +A K+  EM+ +GL P+ +TYN++I G C+          + NL    
Sbjct: 234 LIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG 293

Query: 356 ---------------------EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
                                EE ++L  +M  +      VTY+ LI  LC  G+ +EA 
Sbjct: 294 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 353

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +L + M +KG+  D  +Y+ LI  +C+EG++
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 134/305 (43%), Gaps = 29/305 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S N+L  +L+    ++     M  + S    PN  +  + I  LC  G IEEA
Sbjct: 293 GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 352

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 +KE G+     +++                           LI AFC +G++  
Sbjct: 353 MNLLKLMKEKGLTPDAYSYDP--------------------------LIAAFCREGRLDV 386

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E L  ++ DG +P+   +N +++  C+     +  E+   +     +P++ +Y  + +
Sbjct: 387 AIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 446

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L  S  ++ A  +  ++   G  PD + Y ++I  LC+ G + +A ++  +M      P
Sbjct: 447 ALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHP 506

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN ++ G+C+   +E+A  + + M+  G      TY  LI G+   G   EA  L 
Sbjct: 507 SVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELA 566

Query: 398 EEMAQ 402
            ++ +
Sbjct: 567 NDLVR 571


>gi|414591138|tpg|DAA41709.1| TPA: hypothetical protein ZEAMMB73_028111 [Zea mays]
          Length = 583

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 20/342 (5%)

Query: 99  HYGFSPDLVSCNVLFDSLV----EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
            +G S + +  N L D  V    + R  ++ ++ +++ G      +  + +  L  +  I
Sbjct: 205 RHGVSLNALCYNSLLDCYVRQKDDGRVQEI-LEIMENEGIEATVGTYTILVDSLSTARDI 263

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
            +    F+++K   V G +  + + +    +        K+  + + +G          L
Sbjct: 264 SKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVL 323

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC  G++     LL  +   G+      FN +I  +C K   G V + L    A  +
Sbjct: 324 INGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRK---GMVDDALKIKAAMEK 380

Query: 266 AP---DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
                D +TY  +  GLC+  +  EA  + + + E G VP+ V YTT+I   CK G + +
Sbjct: 381 MGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVE 440

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           AR+++ EM  KG  P+  TYN MI GY +  ++ EA+R  KEM  KG+     TY +L+ 
Sbjct: 441 ARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRKEMEKKGFVPDVYTYASLVH 500

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           G C++G+ D A  LFEEM Q+G   +V+ Y  LI G  KEG+
Sbjct: 501 GHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEGR 542



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/307 (29%), Positives = 154/307 (50%), Gaps = 11/307 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           L S   S +P +  + +  LC+SG +++A      +   GV  +   +NS LL C    +
Sbjct: 168 LGSCPGSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNALCYNS-LLDCYVRQK 226

Query: 189 TD-----LVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
            D     ++  + ++ IE+       L+ +      +S+   L  ++  + +V +   + 
Sbjct: 227 DDGRVQEILEIMENEGIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYT 286

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            +I+ +C   N  R +++L   V     P+  TY  +ING CK  +   A  +  D++ +
Sbjct: 287 AVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQ 346

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G   + +++ T+I G C+ G + DA K+   M   G+  + YTYN++  G CR++ L+EA
Sbjct: 347 GVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEA 406

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           K L   M++ G     VTY TLI+  C  G   EA  LF EMA+KG    V+TYN +I G
Sbjct: 407 KTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDG 466

Query: 419 YCKEGKI 425
           Y K+G I
Sbjct: 467 YTKKGSI 473



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 146/328 (44%), Gaps = 12/328 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
           G    + +  +L DSL  AR         +    +     + LY   I   C +G +  A
Sbjct: 242 GIEATVGTYTILVDSLSTARDISKVEALFNEMKANNVVGDVYLYTAVINAYCRAGNMRRA 301

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +    GV  + +T+   + G  KI + +    L  D+   G          +I  
Sbjct: 302 AKVLDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTMIDG 361

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +C  G V +  ++   + + G+  +   +N L    C          LLH M+     P+
Sbjct: 362 YCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGVVPN 421

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+  CK    +EA R+F ++ E+G  P  V Y  +I G  K G + +A +   
Sbjct: 422 YVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAERFRK 481

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KG +P+ YTY S++HG+C    ++ A +L +EM  +G     V Y  LI+GL   G
Sbjct: 482 EMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLAKEG 541

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           R++ A+ L+++M + G+  D   Y+ L+
Sbjct: 542 RSEAAFQLYDDMLKAGLIPDDSLYSALV 569



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 134/290 (46%), Gaps = 25/290 (8%)

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALL--GCIKIDRTDLVWKLYHDLIESGYLIQA 208
           +GL+E A  +          GS+    ++++  G  K  R D   +L  D+   G  + A
Sbjct: 161 AGLLERALGSCP--------GSVSPLAASVVVDGLCKSGRVDDARRLLDDMPRHGVSLNA 212

Query: 209 FC------------NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
            C            +DG+V E  E++     +G+      +  L+      ++  +V  L
Sbjct: 213 LCYNSLLDCYVRQKDDGRVQEILEIMEN---EGIEATVGTYTILVDSLSTARDISKVEAL 269

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M A N   D + Y  VIN  C++     A +V ++    G  P+   Y  +I+G CK
Sbjct: 270 FNEMKANNVVGDVYLYTAVINAYCRAGNMRRAAKVLDECVGNGVEPNERTYGVLINGFCK 329

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +G +  A  +  +M  +G+  N+  +N+MI GYCR   +++A ++   M   G      T
Sbjct: 330 IGQMEAAEMLLADMQGQGVGLNQIIFNTMIDGYCRKGMVDDALKIKAAMEKMGVELDIYT 389

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           YNTL  GLC   R DEA  L   M + G+  + +TY TLI  +CK+G +V
Sbjct: 390 YNTLACGLCRVNRLDEAKTLLHIMIEMGVVPNYVTYTTLISIHCKDGDMV 439



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 122/281 (43%), Gaps = 10/281 (3%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           RA KV +D     G  PN  +  + I   C+ G +E A    + ++  GV  +   +N+ 
Sbjct: 300 RAAKV-LDECVGNGVEPNERTYGVLINGFCKIGQMEAAEMLLADMQGQGVGLNQIIFNTM 358

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGL 230
           + G  +    D   K+   + + G          L    C   ++ E   LL  ++E G+
Sbjct: 359 IDGYCRKGMVDDALKIKAAMEKMGVELDIYTYNTLACGLCRVNRLDEAKTLLHIMIEMGV 418

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           VP    +  LIS  C+  +      L   M  +   P   TY  +I+G  K     EA R
Sbjct: 419 VPNYVTYTTLISIHCKDGDMVEARRLFREMAEKGATPSVVTYNVMIDGYTKKGSIREAER 478

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
              +++++G+VPD   Y +++HG C  G +  A K++ EM  +G  PN   Y ++I G  
Sbjct: 479 FRKEMEKKGFVPDVYTYASLVHGHCVNGKVDVALKLFEEMKQRGTEPNVVAYTALISGLA 538

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
           +    E A +L+ +ML  G       Y+ L+  L    R D
Sbjct: 539 KEGRSEAAFQLYDDMLKAGLIPDDSLYSALVGSLHTDNRKD 579


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +A+ +  + + S GF P+ ++    I  LC +  ++ AF  F ++K   V   + T+   
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K+       K + +++  G          LI A+    K+S   EL   +L +G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARN----------------RAPDNFTYEE 274
           +P    +  LI   C+     +  ++   M                    R P+ FTY  
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLCK+ K  EA  + + +   G  P+ ++Y  +I G CK+G L +A+ ++ +M  +G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN YTY+S+I    +   L+ A ++   ML+       + Y  +I GLC  G+TDEAY
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M +KG   +V+TY  +I G+ K GK+
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 162/394 (41%), Gaps = 66/394 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S  GF+ D  +       L +A  ++ A+  ++   F  +       I  LCE+ L EEA
Sbjct: 259 SDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEA 318

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               S+++      ++ T+   L GC++  +     ++   +I  G          LI A
Sbjct: 319 MDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHA 378

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-------------EKKNFG---- 251
           +C  G  S  Y+LL+++ + G  P    +N LI   C              +K +G    
Sbjct: 379 YCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLD 438

Query: 252 ------------------------RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
                                   +   ++  M+++   PD  TY +VI  LC + K   
Sbjct: 439 AHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDN 498

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+ +F ++K    VPD   YT +I   CK+G L  ARK + EM+  G  PN  TY ++IH
Sbjct: 499 AFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIH 558

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM------- 400
            Y +   +  A  L + ML +G     VTY  LI G C  G+ ++A  ++  M       
Sbjct: 559 AYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIP 618

Query: 401 -------AQKGIFRD--VITYNTLIQGYCKEGKI 425
                     G  RD  + TY  L+ G CK  K+
Sbjct: 619 DVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 153/325 (47%), Gaps = 13/325 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + ++AR    A +  +   S G  PN  +    I   C+SG IE+A
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              +++++       +  +        KID  ++      ++   G L+   C   KV E
Sbjct: 605 CQIYARMRGNADIPDVDMY-------FKIDDGNIRDP---NIFTYGALVDGLCKAHKVKE 654

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL  +  +G  P +  ++ LI  FC+         +   M  R   P+ +TY  +I+
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L K ++   A +V + + E    P+ ++YT +I GLCK+G   +A ++   M  KG  P
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY +MI G+ +   +++   L ++M  KG     VTY  LI   C  G  D+A+ L 
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           +EM Q    + +  Y  +I+G+ +E
Sbjct: 835 DEMKQTYWPKHMAGYRKVIEGFNRE 859



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 28/351 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + +   L  A     A    + + S    P+  +  + I   C+ GL+++A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++   G   ++ T+ + +   +K  +     +L+  ++  G          LI  
Sbjct: 535 RKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDG 594

Query: 209 FCNDGKVSEGYELLRQV--------------LEDGLV--PENTAFNKLISRFCEKKNFGR 252
            C  G++ +  ++  ++              ++DG +  P    +  L+   C+      
Sbjct: 595 HCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKE 654

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M      P++  Y+ +I+G CK  K  EA  VF  + ERGY P+   Y+++I 
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            L K   L  A K+   M+     PN   Y  MI G C++   +EA RL   M +KG   
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             VTY  +I G    G+ D+   L  +M  KG   + +TY  LI   C  G
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 148/334 (44%), Gaps = 26/334 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ +   L D L +A   K A D LD     G  PN    +  I   C+ G ++EA   
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F+K+ E G   ++ T++S +    K  R DL  K+   ++E+           +I   C 
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  E Y L+  + E G  P    +  +I  F +     +  EL+  M A+  AP+  T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-----LCKMGWLGDARKM 326
           Y  +IN  C +    +A+++ +++K+  +      Y  VI G     +  +G L      
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLD----- 868

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-KGYGETTVT-YNTLIAGL 384
             E+     +P    Y  +I  +C+   LE A  LHKEM     Y       Y++LI  L
Sbjct: 869 --EIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESL 926

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            L  + D+A+ L+ +M ++G   ++  +  L++G
Sbjct: 927 SLASKVDKAFELYADMIKRGGIPELSIFFYLVKG 960



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 165/405 (40%), Gaps = 38/405 (9%)

Query: 58  EQTLLSDI-----PSFNFNDPLFFREFLKQQNNVL------------LSIRFFQWLHSHY 100
           +  L+SD+       F      F R+F ++ N  L            L ++FF W     
Sbjct: 97  DAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQI 156

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEEA 157
           G+       + L + L      +V   FL              L + I+  C +GL   A
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +LK++G   S  T+N+ +   ++ DR D  + ++ ++ +SG+          +  
Sbjct: 217 LEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHL 276

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+  E   L+ +   +    +   + ++IS  CE   F    + L  M + +  P+
Sbjct: 277 LCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G  + R+     R+ + +   G  P   ++ ++IH  C+ G    A K+  
Sbjct: 334 VVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLK 393

Query: 329 EMIHKGLLPNEYTYNSMIHGYC------RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           +M   G  P    YN +I G C       +D LE A++ + EMLD       V  + L  
Sbjct: 394 KMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLAR 453

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LC  G+ ++AY +  EM  KG   D  TY+ +I   C   K+ N
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDN 498


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +AF V  + +   GF P+ ++    +  LC +  +E AF  F ++K  G+   + T+   
Sbjct: 466 KAFSVIREMI-GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K    +   K ++++ E G          LI A+    KVS   EL   +L +G 
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN----------------FTYEE 274
           +P    ++ LI   C+     +  ++   M      PD                  TY  
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGA 644

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++G CKS +  EA ++ + +   G  P+ ++Y  +I GLCK+G L +A+++  EM   G
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
                YTY+S+I  Y ++   + A ++  +ML+       V Y  +I GLC  G+TDEAY
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L + M +KG   +V+TY  +I G+   GKI
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKI 795



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 70/379 (18%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           SL +   ++ A+  +++  F P+       I  LCE+ L EEA    ++++      ++ 
Sbjct: 279 SLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338

Query: 175 TWNSALLGCI---KIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLR 223
           T+++ L GC+   ++ R   V  +   ++E  Y        L+ A+C  G  S  Y+LL+
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVLNMM--MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKN---------------------------------- 249
           ++++ G +P    +N LI   C  K+                                  
Sbjct: 397 KMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTR 456

Query: 250 -------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
                  + +   ++  M+ +   PD  TY +V+N LC + K   A+ +F ++K  G V 
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   YT ++   CK G +  ARK + EM   G  PN  TY ++IH Y +   +  A  L 
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-------------- 408
           + ML +G     VTY+ LI G C  G+ ++A  +FE M       D              
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636

Query: 409 --VITYNTLIQGYCKEGKI 425
             V+TY  L+ G+CK  ++
Sbjct: 637 PNVVTYGALLDGFCKSHRV 655



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 153/353 (43%), Gaps = 28/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + + + L  A   ++A    +     G   +  +  + +   C++GLIE+A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F++++E+G   ++ T+ + +   +K  +     +L+  ++  G          LI  
Sbjct: 538 RKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPEN----------------TAFNKLISRFCEKKNFGR 252
            C  G+V +  ++  ++     VP+                   +  L+  FC+      
Sbjct: 598 HCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 657

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M      P+   Y+ +I+GLCK  K  EA  V  ++ E G+      Y+++I 
Sbjct: 658 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLID 717

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
              K+     A K+  +M+     PN   Y  MI G C++   +EA +L + M +KG   
Sbjct: 718 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP 777

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VTY  +I G  + G+ +    L E M  KG+  + +TY  LI   CK G +
Sbjct: 778 NVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 830



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 146/331 (44%), Gaps = 25/331 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + ++A+    A +  +   S G  PN  +    I   C++G +E+A
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------LIESGYLIQAFCN 211
              F ++                 G   +   D+ +K Y D      ++  G L+  FC 
Sbjct: 608 CQIFERM----------------CGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK 651

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V E  +LL  +  +G  P    ++ LI   C+        E+   M         +T
Sbjct: 652 SHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 711

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+   K +++  A +V + + E    P+ V+YT +I GLCK+G   +A K+   M 
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME 771

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TY +MI G+  I  +E    L + M  KG     VTY  LI   C +G  D
Sbjct: 772 EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            A++L EEM Q         Y  +I+G+ KE
Sbjct: 832 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE 862



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 16/336 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L D   ++   + A   LD+    G  PN    +  I  LC+ G ++EA   
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            +++ E G   ++ T++S +    K+ R DL  K+   ++E+           +I   C 
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  E Y+L++ + E G  P    +  +I  F          ELL  M ++  AP+  T
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+  CK+     A+ +  ++K+  +   T  Y  VI G  K     ++  +  E+ 
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESLGLLDEIG 874

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--LDKGYGETTVTYNTLIAGLCLHGR 389
                P    Y  +I    +   LE A RL +E+        + + TYN+LI  LCL  +
Sbjct: 875 QDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANK 934

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + A+ LF EM +KG+  ++ ++ +LI+G  +  KI
Sbjct: 935 VETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKI 970



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 138/347 (39%), Gaps = 44/347 (12%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------DSTGFSPNPNSLEL 143
           I FF W     G+       N L D +V     KV  +FL      D   F    N L  
Sbjct: 149 ISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVL-- 206

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            ++  C +G    A     +LK+     S  T+N  +   +K DR D    ++ ++    
Sbjct: 207 -VRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS--- 262

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
                             L  +  DG      A++      C+    G+  E L  +   
Sbjct: 263 ------------------LANLRMDGFTLRCFAYS-----LCK---VGKWREALTLVETE 296

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N  PD   Y ++I+GLC++    EA    N ++    +P+ V Y+T++ G      LG  
Sbjct: 297 NFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRC 356

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++   M+ +G  P+   +NS++H YC   +   A +L K+M+  G+    V YN LI  
Sbjct: 357 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGS 416

Query: 384 LCLHGRT------DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +C    +      D A   + EM   G+  + I  ++  +  C  GK
Sbjct: 417 ICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 3/223 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++  C +G  S   E L ++ +    P  + +N LI  F +       S +   M   N
Sbjct: 206 LVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLAN 265

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D FT       LCK  K  EA  +   ++   +VPDTV YT +I GLC+     +A 
Sbjct: 266 LRMDGFTLRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFEEAM 322

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
                M     LPN  TY++++ G      L   KR+   M+ +G   +   +N+L+   
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAY 382

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C  G    AY L ++M + G     + YN LI   C +   +N
Sbjct: 383 CTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 18/276 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S +GF   L + + L D   + +    A KV    L+++  +PN       I  LC+ G 
Sbjct: 701 SEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSC-APNVVIYTEMIDGLCKVGK 759

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            +EA+     ++E G   ++ T+ + + G   I + +   +L   +   G          
Sbjct: 760 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C +G +   + LL ++ +         + K+I  F   K F     LL  +   +
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDD 877

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK--ERGYVPDTVMYTTVIHGLCKMGWLGD 322
            AP    Y  +I+ L K+++   A R+  ++       V  +  Y ++I  LC    +  
Sbjct: 878 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVET 937

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           A +++ EM  KG++P   ++ S+I G  R   + EA
Sbjct: 938 AFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 26  LRNLSIETKESQQL-YTEIAKQVCKITRTKPRWE-QTLLSD--IPSFNFNDPLFFREFLK 81
           L  +S+E  E  Q+ Y  +   +CK+ +     E +T +S+   P+  +        + K
Sbjct: 662 LDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFK 721

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPN 137
            +   L S    + L +    +P++V    + D L +      A+K+ M  ++  G  PN
Sbjct: 722 VKRQDLASKVLSKMLEN--SCAPNVVIYTEMIDGLCKVGKTDEAYKL-MQMMEEKGCQPN 778

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +    I      G IE       ++   GV  +  T+   +  C K    D+   L  
Sbjct: 779 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 198 DLIE-------SGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           ++ +       +GY  +I+ F  + +  E   LL ++ +D   P  + +  LI    + +
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896

Query: 249 NFGRVSELLHTMVARNRAPDNF--TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                  LL  +   +    ++  TY  +I  LC + K   A+++F+++ ++G +P+   
Sbjct: 897 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 956

Query: 307 YTTVIHGLCKMGWLGDA 323
           + ++I GL +   + +A
Sbjct: 957 FCSLIKGLFRNSKISEA 973


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 164/338 (48%), Gaps = 16/338 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P++VS N++ D   +AR  + A+ FL   +  G  P P++    +Q  C++G + +A  
Sbjct: 95  APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMD 154

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFC 210
            F+++   G    I  +N  L G  +  +     +L+          D++    +I   C
Sbjct: 155 VFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLC 214

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP--- 267
              K+ E   LL ++ ++ + P    +  LI   C+     +  E+   M A    P   
Sbjct: 215 KWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKM-AEGPCPCTE 273

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             ++   +INGLCK+R+  EA  +F +++ RG  P  V Y T++ GL     L DA ++ 
Sbjct: 274 PAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELT 333

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
           + M+ +   PN +TY  +I   C+ D +EEA +L   M DKG+  +   +  L++ L   
Sbjct: 334 YFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARA 393

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR D+A+ L++EM++    + V + N L+ G  + G +
Sbjct: 394 GRLDDAFELYKEMSRINCQQLVGSSNILLDGILRRGSV 431



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 158/342 (46%), Gaps = 17/342 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           + GFSPD+ S  +L     ++ +F+     LD     G  PN       I CLC++G++ 
Sbjct: 22  YAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLA 81

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LI 206
           EA     ++ +     ++ ++N  + G  K    +       ++ E G+         ++
Sbjct: 82  EAESYLKRMPQHCA-PNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIV 140

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
           Q+FC  G VS+  ++  ++   G  P+   FN L+S     +      EL  +M +R   
Sbjct: 141 QSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCK 200

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           PD  TY  +I GLCK +K  EA  +   +K+    P  V YTT+I  LCK   L  A ++
Sbjct: 201 PDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEV 260

Query: 327 WFEMIHKGLLP---NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            FE + +G  P     Y+   +I+G C+     EAK + +EM  +G   T VTYNTL+ G
Sbjct: 261 -FEKMAEGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEG 319

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L    +  +A  L   M  +    ++ TY  LI   CK  ++
Sbjct: 320 LLSTAKLQDAMELTYFMLDQVPAPNMFTYEILISSLCKTDQV 361



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 150/318 (47%), Gaps = 14/318 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ NVL   L  AR    A +    ++S G  P+  +    I  LC+   ++EA
Sbjct: 163 GCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEA 222

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLI 206
                ++K+  V  +  T+ + +    K  R    ++++  + E              LI
Sbjct: 223 VFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILI 282

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
              C   +  E  E+ +++   G+ P    +N L+             EL + M+ +  A
Sbjct: 283 NGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQVPA 342

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P+ FTYE +I+ LCK+ +  EA+++ + ++++G+VP   ++  ++  L + G L DA ++
Sbjct: 343 PNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFEL 402

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM          + N ++ G  R  +++EAK   K+M D G      TY+ L+ GLC 
Sbjct: 403 YKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCW 462

Query: 387 HGRTDEAYHLFEEMAQKG 404
            G+ D+A  L EE+ + G
Sbjct: 463 QGKADQARKLVEELVRDG 480



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 86/349 (24%), Positives = 143/349 (40%), Gaps = 67/349 (19%)

Query: 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173
           D + +A A    M +    GFSP+  S  L I+   +SG  +       ++ E G+F + 
Sbjct: 8   DLVAQAEAIVEEMKY---AGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNA 64

Query: 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
             +N+                          LI   C  G ++E    L++ +     P 
Sbjct: 65  ILYNN--------------------------LISCLCKAGMLAEAESYLKR-MPQHCAPN 97

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
             ++N +I  +C+ +N  +    L  M      P    Y  ++   CK+    +A  VF 
Sbjct: 98  VVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFA 157

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++  +G  PD V +  ++ GL +   + +AR+++  M  +G  P+  TYN+MI G C+  
Sbjct: 158 EMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWK 217

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ----------- 402
            L+EA  L + M  +    T VTY TLI  LC   R  +AY +FE+MA+           
Sbjct: 218 KLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYS 277

Query: 403 --------------------------KGIFRDVITYNTLIQGYCKEGKI 425
                                     +GI   V+TYNTL++G     K+
Sbjct: 278 VLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKL 326


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 161/335 (48%), Gaps = 11/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC- 159
           GF+P+ ++  VL + L        A   L+    +PN     + I    +SG ++EA   
Sbjct: 308 GFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVP-TPNDVHFTILINGYVKSGRLDEANAF 366

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
            + K+ + G    + T+N+ + G  K         + +D+  +G          L+  FC
Sbjct: 367 LYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFC 426

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              ++ E   +L ++   G       +N L+   C+     +  ++L  M  +   PD F
Sbjct: 427 KKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIF 486

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +I GLCK  ++ +A  ++ D+   G + +TV Y T+IH   + G + +A K+  +M
Sbjct: 487 TFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDM 546

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           + +G   +E TYN +I  +C++   E+A  L  EM+ K    + ++ N LI GLC  G+ 
Sbjct: 547 LFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKV 606

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             A  L  +M  +G+  DV+TYN+LI G CK G I
Sbjct: 607 CNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNI 641



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 155/317 (48%), Gaps = 11/317 (3%)

Query: 116 LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175
           L EA AF    D +   G  P+  +    I  LC+ GL+  A    + +   G   ++ T
Sbjct: 360 LDEANAF--LYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLIT 417

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVL 226
           + + L G  K ++ +    + +++   G+         L++A C +GKV +  ++L ++ 
Sbjct: 418 YTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMS 477

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           + G  P+   FN LI   C+         L   M+      +  TY  +I+   +     
Sbjct: 478 DKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQ 537

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EA ++ ND+  RG   D + Y  +I   CK+G    A  ++ EM+ K L+P+  + N +I
Sbjct: 538 EALKLVNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLI 597

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           +G CR+  +  A  L ++M+ +G     VTYN+LI GLC  G   EA++LF ++  +GI 
Sbjct: 598 NGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQ 657

Query: 407 RDVITYNTLIQGYCKEG 423
            D ITYNTLI  +C+ G
Sbjct: 658 PDAITYNTLICWHCRAG 674



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 147/305 (48%), Gaps = 14/305 (4%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           GF+PN  +  + +  LC  G ++EA    +K+            N    G +K  R D  
Sbjct: 308 GFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILIN----GYVKSGRLDEA 363

Query: 193 WK-LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
              LY  +I++G          LI   C  G +    +++  +  +G  P    +  L+ 
Sbjct: 364 NAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLD 423

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
            FC+K        +L+ M A+    +   Y  ++  LCK+ K  +A  +  ++ ++G  P
Sbjct: 424 GFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKP 483

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   + T+I GLCK+    DA  ++ +M+  G++ N  TYN++IH + R   ++EA +L 
Sbjct: 484 DIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLV 543

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            +ML +G     +TYN LI   C  G T++A  LF+EM +K +    I+ N LI G C+ 
Sbjct: 544 NDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRV 603

Query: 423 GKIVN 427
           GK+ N
Sbjct: 604 GKVCN 608



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 153/328 (46%), Gaps = 29/328 (8%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G +P+L++   L D   +    + A   ++ + + GF  N     + ++ LC++G +
Sbjct: 407 SANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKV 466

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
            +A     ++ + G    I T+N+ + G  K+DR +    LY D+               
Sbjct: 467 PKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDM--------------- 511

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
                      L DG++     +N LI  F          +L++ M+ R    D  TY  
Sbjct: 512 -----------LLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNG 560

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I   CK     +A  +F+++  +  VP  +    +I+GLC++G + +A ++  +MIH+G
Sbjct: 561 LIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALELLRDMIHRG 620

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L P+  TYNS+I+G C++ N+ EA  L  ++  +G     +TYNTLI   C  G  D+AY
Sbjct: 621 LAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAY 680

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            L     +     + +T+  L+  + KE
Sbjct: 681 LLLLRGVENAFIPNDVTWYILVSNFIKE 708



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 158/358 (44%), Gaps = 27/358 (7%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SFN   P    + L    +V  S+  FQW  S  G+       +VL D L  A+ FKV  
Sbjct: 63  SFNQITPFQLCKLLLLPLDVSTSMAIFQWAGSQKGYCHTFDVYHVLIDKLGAAKEFKVI- 121

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
                       + L L I+   E G+          +K  G           LL    +
Sbjct: 122 ------------DKLLLQIK---EEGIAFRESLFICIMKYYGRANLPGQATRMLLDMKGV 166

Query: 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
              +  +K Y+ +++   L+ A C     +  YE+L +    G++P    F  ++   C 
Sbjct: 167 YCCEPTFKSYNVVLD--ILVSANCPSVAANVFYEMLSK----GVIPTVYTFGVVMKALCM 220

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    LL  M      P++  Y+ +I+ L K  +  EA ++  ++   G +PD   
Sbjct: 221 VNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDT 280

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           +  VI+GLC++  + +  K+   M+ +G  PN+ TY  +++G CR+  ++EA+ L    L
Sbjct: 281 FNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVL----L 336

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEA-YHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +K      V +  LI G    GR DEA   L+++M + G   DV T+NTLI G CK+G
Sbjct: 337 NKVPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKG 394



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 108/234 (46%), Gaps = 7/234 (2%)

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
           + +YH LI+     + F    KV +  +LL Q+ E+G+    + F  ++  +      G+
Sbjct: 102 FDVYHVLIDKLGAAKEF----KVID--KLLLQIKEEGIAFRESLFICIMKYYGRANLPGQ 155

Query: 253 VSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
            + +L  M         F +Y  V++ L  +     A  VF ++  +G +P    +  V+
Sbjct: 156 ATRMLLDMKGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVM 215

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             LC +  + +A  +  +M   G +PN   Y ++IH   + D + EA +L +EM   G  
Sbjct: 216 KALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCL 275

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               T+N +I GLC   R  E   L + M  +G   + ITY  L+ G C+ GK+
Sbjct: 276 PDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKV 329


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +AF V  + +   GF P+ ++    +  LC +  +E AF  F ++K  G+   + T+   
Sbjct: 466 KAFSVIREMI-GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 524

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K    +   K ++++ E G          LI A+    KVS   EL   +L +G 
Sbjct: 525 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 584

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN----------------FTYEE 274
           +P    ++ LI   C+     +  ++   M      PD                  TY  
Sbjct: 585 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGA 644

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++G CKS +  EA ++ + +   G  P+ ++Y  +I GLCK+G L +A+++  EM   G
Sbjct: 645 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 704

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
                YTY+S+I  Y ++   + A ++  +ML+       V Y  +I GLC  G+TDEAY
Sbjct: 705 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 764

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L + M +KG   +V+TY  +I G+   GKI
Sbjct: 765 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKI 795



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 70/379 (18%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           SL +   ++ A+  +++  F P+       I  LCE+ L EEA    ++++      ++ 
Sbjct: 279 SLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338

Query: 175 TWNSALLGCI---KIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLR 223
           T+++ L GC+   ++ R   V  +   ++E  Y        L+ A+C  G  S  Y+LL+
Sbjct: 339 TYSTLLCGCLNKKQLGRCKRVLNMM--MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 396

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKN---------------------------------- 249
           ++++ G +P    +N LI   C  K+                                  
Sbjct: 397 KMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTR 456

Query: 250 -------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
                  + +   ++  M+ +   PD  TY +V+N LC + K   A+ +F ++K  G V 
Sbjct: 457 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 516

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   YT ++   CK G +  ARK + EM   G  PN  TY ++IH Y +   +  A  L 
Sbjct: 517 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 576

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-------------- 408
           + ML +G     VTY+ LI G C  G+ ++A  +FE M       D              
Sbjct: 577 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 636

Query: 409 --VITYNTLIQGYCKEGKI 425
             V+TY  L+ G+CK  ++
Sbjct: 637 PNVVTYGALLDGFCKSHRV 655



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 153/353 (43%), Gaps = 28/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + + + L  A   ++A    +     G   +  +  + +   C++GLIE+A
Sbjct: 478 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 537

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F++++E+G   ++ T+ + +   +K  +     +L+  ++  G          LI  
Sbjct: 538 RKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 597

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPEN----------------TAFNKLISRFCEKKNFGR 252
            C  G+V +  ++  ++     VP+                   +  L+  FC+      
Sbjct: 598 HCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 657

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M      P+   Y+ +I+GLCK  K  EA  V  ++ E G+      Y+++I 
Sbjct: 658 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLID 717

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
              K+     A K+  +M+     PN   Y  MI G C++   +EA +L + M +KG   
Sbjct: 718 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP 777

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VTY  +I G  + G+ +    L E M  KG+  + +TY  LI   CK G +
Sbjct: 778 NVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 830



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 146/331 (44%), Gaps = 25/331 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + ++A+    A +  +   S G  PN  +    I   C++G +E+A
Sbjct: 548 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 607

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------LIESGYLIQAFCN 211
              F ++                 G   +   D+ +K Y D      ++  G L+  FC 
Sbjct: 608 CQIFERM----------------CGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK 651

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V E  +LL  +  +G  P    ++ LI   C+        E+   M         +T
Sbjct: 652 SHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 711

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+   K +++  A +V + + E    P+ V+YT +I GLCK+G   +A K+   M 
Sbjct: 712 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME 771

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TY +MI G+  I  +E    L + M  KG     VTY  LI   C +G  D
Sbjct: 772 EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 831

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            A++L EEM Q         Y  +I+G+ KE
Sbjct: 832 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE 862



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 16/336 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L D   ++   + A   LD+    G  PN    +  I  LC+ G ++EA   
Sbjct: 637 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 696

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            +++ E G   ++ T++S +    K+ R DL  K+   ++E+           +I   C 
Sbjct: 697 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 756

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  E Y+L++ + E G  P    +  +I  F          ELL  M ++  AP+  T
Sbjct: 757 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 816

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+  CK+     A+ +  ++K+  +   T  Y  VI G  K     ++  +  E+ 
Sbjct: 817 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESLGLLDEIG 874

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--LDKGYGETTVTYNTLIAGLCLHGR 389
                P    Y  +I    +   LE A RL +E+        + + TYN+LI  LCL  +
Sbjct: 875 QDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANK 934

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + A+ LF EM +KG+  ++ ++ +LI+G  +  KI
Sbjct: 935 VETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKI 970



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 138/347 (39%), Gaps = 44/347 (12%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------DSTGFSPNPNSLEL 143
           I FF W     G+       N L D +V     KV  +FL      D   F    N L  
Sbjct: 149 ISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGEFLNVL-- 206

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            ++  C +G    A     +LK+     S  T+N  +   +K DR D    ++ ++    
Sbjct: 207 -VRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS--- 262

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
                             L  +  DG      A++      C+    G+  E L  +   
Sbjct: 263 ------------------LANLRMDGFTLRCFAYS-----LCK---VGKWREALTLVETE 296

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N  PD   Y ++I+GLC++    EA    N ++    +P+ V Y+T++ G      LG  
Sbjct: 297 NFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRC 356

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++   M+ +G  P+   +NS++H YC   +   A +L K+M+  G+    V YN LI  
Sbjct: 357 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGS 416

Query: 384 LCLHGRT------DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +C    +      D A   + EM   G+  + I  ++  +  C  GK
Sbjct: 417 ICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 3/223 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++  C +G  S   E L ++ +    P  + +N LI  F +       S +   M   N
Sbjct: 206 LVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLAN 265

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D FT       LCK  K  EA  +   ++   +VPDTV YT +I GLC+     +A 
Sbjct: 266 LRMDGFTLRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFEEAM 322

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
                M     LPN  TY++++ G      L   KR+   M+ +G   +   +N+L+   
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAY 382

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C  G    AY L ++M + G     + YN LI   C +   +N
Sbjct: 383 CTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 425



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 18/276 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S +GF   L + + L D   + +    A KV    L+++  +PN       I  LC+ G 
Sbjct: 701 SEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSC-APNVVIYTEMIDGLCKVGK 759

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            +EA+     ++E G   ++ T+ + + G   I + +   +L   +   G          
Sbjct: 760 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C +G +   + LL ++ +         + K+I  F   K F     LL  +   +
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDD 877

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK--ERGYVPDTVMYTTVIHGLCKMGWLGD 322
            AP    Y  +I+ L K+++   A R+  ++       V  +  Y ++I  LC    +  
Sbjct: 878 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVET 937

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           A +++ EM  KG++P   ++ S+I G  R   + EA
Sbjct: 938 AFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 973



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 26  LRNLSIETKESQQL-YTEIAKQVCKITRTKPRWE-QTLLSD--IPSFNFNDPLFFREFLK 81
           L  +S+E  E  Q+ Y  +   +CK+ +     E +T +S+   P+  +        + K
Sbjct: 662 LDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFK 721

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPN 137
            +   L S    + L +    +P++V    + D L +      A+K+ M  ++  G  PN
Sbjct: 722 VKRQDLASKVLSKMLEN--SCAPNVVIYTEMIDGLCKVGKTDEAYKL-MQMMEEKGCQPN 778

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +    I      G IE       ++   GV  +  T+   +  C K    D+   L  
Sbjct: 779 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 838

Query: 198 DLIE-------SGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           ++ +       +GY  +I+ F  + +  E   LL ++ +D   P  + +  LI    + +
Sbjct: 839 EMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 896

Query: 249 NFGRVSELLHTMVARNRAPDNF--TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                  LL  +   +    ++  TY  +I  LC + K   A+++F+++ ++G +P+   
Sbjct: 897 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 956

Query: 307 YTTVIHGLCKMGWLGDA 323
           + ++I GL +   + +A
Sbjct: 957 FCSLIKGLFRNSKISEA 973


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A    PD +TY  +INGLCK  K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L  +  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNGRVDLAMEIYKQMLSQSLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 150/328 (45%), Gaps = 12/328 (3%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESG 152
           L   + F     +C  + + L++ + FK+   F + +     P SL  +   +    + G
Sbjct: 91  LTKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEG 150

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG         
Sbjct: 151 EIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYS 210

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI   C + K+ +  EL  ++L++GLVP    F  LI   C+        E+   M+++
Sbjct: 211 VLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQ 270

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           + + D  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK G L  A
Sbjct: 271 SLSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETA 330

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      TY  +I  
Sbjct: 331 FEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINE 390

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
            C  G       L +EM + G    V+T
Sbjct: 391 FCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 155/331 (46%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +AF V  + +   GF P+ ++    +  LC +  +E AF  F ++K  G+   + T+   
Sbjct: 425 KAFSVIREMI-GQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIM 483

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K    +   K ++++ E G          LI A+    KVS   EL   +L +G 
Sbjct: 484 VDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGC 543

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN----------------FTYEE 274
           +P    ++ LI   C+     +  ++   M      PD                  TY  
Sbjct: 544 LPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGA 603

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++G CKS +  EA ++ + +   G  P+ ++Y  +I GLCK+G L +A+++  EM   G
Sbjct: 604 LLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHG 663

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
                YTY+S+I  Y ++   + A ++  +ML+       V Y  +I GLC  G+TDEAY
Sbjct: 664 FPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAY 723

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L + M +KG   +V+TY  +I G+   GKI
Sbjct: 724 KLMQMMEEKGCQPNVVTYTAMIDGFGMIGKI 754



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 163/379 (43%), Gaps = 70/379 (18%)

Query: 115 SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           SL +   ++ A+  +++  F P+       I  LCE+ L EEA    ++++      ++ 
Sbjct: 238 SLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 297

Query: 175 TWNSALLGCI---KIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLR 223
           T+++ L GC+   ++ R   V  +   ++E  Y        L+ A+C  G  S  Y+LL+
Sbjct: 298 TYSTLLCGCLNKKQLGRCKRVLNMM--MMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLK 355

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKN---------------------------------- 249
           ++++ G +P    +N LI   C  K+                                  
Sbjct: 356 KMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTR 415

Query: 250 -------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
                  + +   ++  M+ +   PD  TY +V+N LC + K   A+ +F ++K  G V 
Sbjct: 416 CLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVA 475

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D   YT ++   CK G +  ARK + EM   G  PN  TY ++IH Y +   +  A  L 
Sbjct: 476 DVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELF 535

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-------------- 408
           + ML +G     VTY+ LI G C  G+ ++A  +FE M       D              
Sbjct: 536 ETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSER 595

Query: 409 --VITYNTLIQGYCKEGKI 425
             V+TY  L+ G+CK  ++
Sbjct: 596 PNVVTYGALLDGFCKSHRV 614



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 153/353 (43%), Gaps = 28/353 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + + + L  A   ++A    +     G   +  +  + +   C++GLIE+A
Sbjct: 437 GFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQA 496

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F++++E+G   ++ T+ + +   +K  +     +L+  ++  G          LI  
Sbjct: 497 RKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDG 556

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPEN----------------TAFNKLISRFCEKKNFGR 252
            C  G+V +  ++  ++     VP+                   +  L+  FC+      
Sbjct: 557 HCKAGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEE 616

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M      P+   Y+ +I+GLCK  K  EA  V  ++ E G+      Y+++I 
Sbjct: 617 ARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLID 676

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
              K+     A K+  +M+     PN   Y  MI G C++   +EA +L + M +KG   
Sbjct: 677 RYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQP 736

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VTY  +I G  + G+ +    L E M  KG+  + +TY  LI   CK G +
Sbjct: 737 NVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGAL 789



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 146/331 (44%), Gaps = 25/331 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + ++A+    A +  +   S G  PN  +    I   C++G +E+A
Sbjct: 507 GCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKA 566

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD------LIESGYLIQAFCN 211
              F ++                 G   +   D+ +K Y D      ++  G L+  FC 
Sbjct: 567 CQIFERM----------------CGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCK 610

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +V E  +LL  +  +G  P    ++ LI   C+        E+   M         +T
Sbjct: 611 SHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYT 670

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+   K +++  A +V + + E    P+ V+YT +I GLCK+G   +A K+   M 
Sbjct: 671 YSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMME 730

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TY +MI G+  I  +E    L + M  KG     VTY  LI   C +G  D
Sbjct: 731 EKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALD 790

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            A++L EEM Q         Y  +I+G+ KE
Sbjct: 791 VAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE 821



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 153/336 (45%), Gaps = 16/336 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L D   ++   + A   LD+    G  PN    +  I  LC+ G ++EA   
Sbjct: 596 PNVVTYGALLDGFCKSHRVEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEV 655

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
            +++ E G   ++ T++S +    K+ R DL  K+   ++E+           +I   C 
Sbjct: 656 KTEMSEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCK 715

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  E Y+L++ + E G  P    +  +I  F          ELL  M ++  AP+  T
Sbjct: 716 VGKTDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVT 775

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+  CK+     A+ +  ++K+  +   T  Y  VI G  K     ++  +  E+ 
Sbjct: 776 YRVLIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNK--EFIESLGLLDEIG 833

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--LDKGYGETTVTYNTLIAGLCLHGR 389
                P    Y  +I    +   LE A RL +E+        + + TYN+LI  LCL  +
Sbjct: 834 QDDTAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANK 893

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + A+ LF EM +KG+  ++ ++ +LI+G  +  KI
Sbjct: 894 VETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKI 929



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 138/347 (39%), Gaps = 44/347 (12%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL------DSTGFSPNPNSLEL 143
           I FF W     G+       N L D +V     KV  +FL      D   F    N L  
Sbjct: 108 ISFFVWAGRQIGYKHTAPVYNALVDLIVRDDDEKVPEEFLQQIRDDDKEVFGQFLNVL-- 165

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            ++  C +G    A     +LK+     S  T+N  +   +K DR D    ++ ++    
Sbjct: 166 -VRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMS--- 221

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
                             L  +  DG      A++      C+    G+  E L  +   
Sbjct: 222 ------------------LANLRMDGFTLRCFAYS-----LCK---VGKWREALTLVETE 255

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N  PD   Y ++I+GLC++    EA    N ++    +P+ V Y+T++ G      LG  
Sbjct: 256 NFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRC 315

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++   M+ +G  P+   +NS++H YC   +   A +L K+M+  G+    V YN LI  
Sbjct: 316 KRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGS 375

Query: 384 LCLHGRT------DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +C    +      D A   + EM   G+  + I  ++  +  C  GK
Sbjct: 376 ICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 422



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/223 (27%), Positives = 96/223 (43%), Gaps = 3/223 (1%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++  C +G  S   E L ++ +    P  + +N LI  F +       S +   M   N
Sbjct: 165 LVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLAN 224

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D FT       LCK  K  EA  +   ++   +VPDTV YT +I GLC+     +A 
Sbjct: 225 LRMDGFTLRCFAYSLCKVGKWREALTL---VETENFVPDTVFYTKLISGLCEASLFEEAM 281

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
                M     LPN  TY++++ G      L   KR+   M+ +G   +   +N+L+   
Sbjct: 282 DFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAY 341

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           C  G    AY L ++M + G     + YN LI   C +   +N
Sbjct: 342 CTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLN 384



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 117/276 (42%), Gaps = 18/276 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           S +GF   L + + L D   + +    A KV    L+++  +PN       I  LC+ G 
Sbjct: 660 SEHGFPATLYTYSSLIDRYFKVKRQDLASKVLSKMLENSC-APNVVIYTEMIDGLCKVGK 718

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            +EA+     ++E G   ++ T+ + + G   I + +   +L   +   G          
Sbjct: 719 TDEAYKLMQMMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 778

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI   C +G +   + LL ++ +         + K+I  F   K F     LL  +   +
Sbjct: 779 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDD 836

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK--ERGYVPDTVMYTTVIHGLCKMGWLGD 322
            AP    Y  +I+ L K+++   A R+  ++       V  +  Y ++I  LC    +  
Sbjct: 837 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVET 896

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           A +++ EM  KG++P   ++ S+I G  R   + EA
Sbjct: 897 AFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA 932



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 64/317 (20%), Positives = 133/317 (41%), Gaps = 24/317 (7%)

Query: 26  LRNLSIETKESQQL-YTEIAKQVCKITRTKPRWE-QTLLSD--IPSFNFNDPLFFREFLK 81
           L  +S+E  E  Q+ Y  +   +CK+ +     E +T +S+   P+  +        + K
Sbjct: 621 LDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYFK 680

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPN 137
            +   L S    + L +    +P++V    + D L +      A+K+ M  ++  G  PN
Sbjct: 681 VKRQDLASKVLSKMLEN--SCAPNVVIYTEMIDGLCKVGKTDEAYKL-MQMMEEKGCQPN 737

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +    I      G IE       ++   GV  +  T+   +  C K    D+   L  
Sbjct: 738 VVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRVLIDHCCKNGALDVAHNLLE 797

Query: 198 DLIE-------SGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
           ++ +       +GY  +I+ F  + +  E   LL ++ +D   P  + +  LI    + +
Sbjct: 798 EMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYRLLIDNLIKAQ 855

Query: 249 NFGRVSELLHTMVARNRAPDNF--TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                  LL  +   +    ++  TY  +I  LC + K   A+++F+++ ++G +P+   
Sbjct: 856 RLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMTKKGVIPEMQS 915

Query: 307 YTTVIHGLCKMGWLGDA 323
           + ++I GL +   + +A
Sbjct: 916 FCSLIKGLFRNSKISEA 932


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 176/420 (41%), Gaps = 18/420 (4%)

Query: 15  NPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPL 74
           N RN       +  L    K     Y  +    CK  R +    +T+L  +    F+  +
Sbjct: 22  NSRNIDKATRVMGILEKHGKPDVFAYNAVISGFCKANRIES--AKTVLDRMKRKGFSPDV 79

Query: 75  FFREFLKQ----QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD 130
                +      +  + L+++ F+ L       P L++  +L ++ +       A+  LD
Sbjct: 80  VTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLD 139

Query: 131 ---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187
              S G  P+  +  +  + LC+ G ++ AF     L   G    + T+N  L   +   
Sbjct: 140 EMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQG 199

Query: 188 RTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238
           + D   K   ++   G          LI + C DGK+ E   L++ + E GL P+   ++
Sbjct: 200 KWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYD 259

Query: 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
            LI+ FC +       E L  M+     PD   Y  ++  LCK+     A  +F  L E 
Sbjct: 260 PLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEV 319

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G  P+   Y T++  L   G    A  M  +M+ KG+ P+  TYNS+I   CR   ++EA
Sbjct: 320 GCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEA 379

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             L  +ML   +    V+Y T++ GLC   R D+A  +   M + G   +  TY  LI+G
Sbjct: 380 IGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTYTLLIEG 439



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 49/372 (13%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           + PD++ C  L      +R    A   M  L+  G  P+  +    I   C++  IE A 
Sbjct: 6   YQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHG-KPDVFAYNAVISGFCKANRIESAK 64

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQA 208
               ++K  G    + T N  +       + DL  K++ +L++             LI+A
Sbjct: 65  TVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEA 124

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           +  +G + E  +LL ++L  GL P+   +N +    C++    R  E + T+ +R   PD
Sbjct: 125 YILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPD 184

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++  L    K  E  +  +++  RG  P+ V Y+ +I  LC+ G + ++  +  
Sbjct: 185 VITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVK 244

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KGL P+ Y Y+ +I  +CR   L+ A      M+  G+    V YNT++A LC +G
Sbjct: 245 VMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNG 304

Query: 389 RTDEAYHLF-----------------------------------EEMAQKGIFRDVITYN 413
             D A  +F                                    +M  KGI  DVITYN
Sbjct: 305 NGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYN 364

Query: 414 TLIQGYCKEGKI 425
           +LI   C++G +
Sbjct: 365 SLISCLCRDGMV 376



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEAR----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           GFSPD+V+ N++  +         A KV  + L      P   +  + I+     G I+E
Sbjct: 74  GFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDE 133

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A     ++   G+     T+N    G  K  + D  ++            D+I    L++
Sbjct: 134 ALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLR 193

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A  N GK  EG + + ++   G  P    ++ LIS  C          L+  M  +   P
Sbjct: 194 ALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTP 253

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D + Y+ +I   C+  K   A    + +   G++PD V Y T++  LCK G    A +++
Sbjct: 254 DAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIF 313

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            ++   G  PN  +YN+M+       +   A  +  +ML KG     +TYN+LI+ LC  
Sbjct: 314 GKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRD 373

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  DEA  L  +M       ++++Y T++ G CK  +I
Sbjct: 374 GMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRI 411



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/320 (23%), Positives = 138/320 (43%), Gaps = 30/320 (9%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSP 136
           L ++  V  +  F + L+S  G  PD+++ N+L  +L+    +      M  + S G  P
Sbjct: 160 LCKEGKVDRAFEFVRTLNSR-GCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEP 218

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  +  + I  LC  G IEE+      +KE G+      ++                   
Sbjct: 219 NVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDP------------------ 260

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI AFC +GK+    E L  ++ DG +P+   +N +++  C+  N     E+
Sbjct: 261 --------LIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEI 312

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              +      P+  +Y  +++ L  S  R  A  + + +  +G  PD + Y ++I  LC+
Sbjct: 313 FGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQMLSKGIDPDVITYNSLISCLCR 372

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G + +A  +  +M+     PN  +Y +++ G C+   +++A  +   M++ G      T
Sbjct: 373 DGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETT 432

Query: 377 YNTLIAGLCLHGRTDEAYHL 396
           Y  LI G+   G   +A  L
Sbjct: 433 YTLLIEGIGFSGSRTQAMEL 452



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/167 (35%), Positives = 86/167 (51%), Gaps = 2/167 (1%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           MVA++  PD     ++I G   SR   +A RV   L++ G  PD   Y  VI G CK   
Sbjct: 1   MVAKDYQPDVILCTKLIKGFFNSRNIDKATRVMGILEKHGK-PDVFAYNAVISGFCKANR 59

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML-DKGYGETTVTYN 378
           +  A+ +   M  KG  P+  T+N MI  +C    ++ A ++ +E+L D     T +TY 
Sbjct: 60  IESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYT 119

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            LI    L G  DEA  L +EM  +G+  D  TYN + +G CKEGK+
Sbjct: 120 ILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKV 166



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 86/210 (40%), Gaps = 18/210 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD    + L  +        +A++FLD     GF P+  +    +  LC++G  + A
Sbjct: 250 GLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHA 309

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL------------LGCIKIDRTDLVWKLYHDLIESGYL 205
              F KL E+G   ++ ++N+ L            LG I      L   +  D+I    L
Sbjct: 310 VEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMIS---QMLSKGIDPDVITYNSL 366

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I   C DG V E   LL  +L     P   ++  ++   C+        E+L  M+    
Sbjct: 367 ISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIENGC 426

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            P+  TY  +I G+  S  R +A  + N L
Sbjct: 427 QPNETTYTLLIEGIGFSGSRTQAMELANSL 456


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +A+ +  + + S GF P+ ++    I  LC +  ++ AF  F ++K   V   + T+   
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K+       K + +++  G          LI A+    K+S   EL   +L +G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARN----------------RAPDNFTYEE 274
           +P    +  LI   C+     +  ++   M                    R P+ FTY  
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLCK+ K  EA  + + +   G  P+ ++Y  +I G CK+G L +A+ ++ +M  +G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN YTY+S+I    +   L+ A ++   ML+       + Y  +I GLC  G+TDEAY
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M +KG   +V+TY  +I G+ K GK+
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 160/394 (40%), Gaps = 66/394 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S  GF+ D  +       L +A  ++ A+  ++   F  +       I  LCE+ L EEA
Sbjct: 259 SDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEA 318

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               S+++      ++ T+   L GC++  +     ++   +I  G          LI A
Sbjct: 319 MDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHA 378

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN------------------- 249
           +C  G  S  Y+LL+++ + G  P    +N LI   C  +                    
Sbjct: 379 YCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLD 438

Query: 250 ----------------------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
                                 F +   ++  M+++   PD  TY +VI  LC + K   
Sbjct: 439 AHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDN 498

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+ +F ++K    VPD   YT +I   CK+G L  ARK + EM+  G  PN  TY ++IH
Sbjct: 499 AFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIH 558

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM------- 400
            Y +   +  A  L + ML +G     VTY  LI G C  G+ ++A  ++  M       
Sbjct: 559 AYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIP 618

Query: 401 -------AQKGIFRD--VITYNTLIQGYCKEGKI 425
                     G  RD  + TY  L+ G CK  K+
Sbjct: 619 DVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 153/325 (47%), Gaps = 13/325 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + ++AR    A +  +   S G  PN  +    I   C+SG IE+A
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              +++++       +  +        KID  ++      ++   G L+   C   KV E
Sbjct: 605 CQIYARMRGNADIPDVDMY-------FKIDDGNIRDP---NIFTYGALVDGLCKAHKVKE 654

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL  +  +G  P +  ++ LI  FC+         +   M  R   P+ +TY  +I+
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L K ++   A +V + + E    P+ ++YT +I GLCK+G   +A ++   M  KG  P
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY +MI G+ +   +++   L ++M  KG     VTY  LI   C  G  D+A+ L 
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           +EM Q    + +  Y  +I+G+ +E
Sbjct: 835 DEMKQTYWPKHMAGYRKVIEGFNRE 859



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 28/351 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + +   L  A     A    + + S    P+  +  + I   C+ GL+++A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++   G   ++ T+ + +   +K  +     +L+  ++  G          LI  
Sbjct: 535 RKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDG 594

Query: 209 FCNDGKVSEGYELLRQV--------------LEDGLV--PENTAFNKLISRFCEKKNFGR 252
            C  G++ +  ++  ++              ++DG +  P    +  L+   C+      
Sbjct: 595 HCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKE 654

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M      P++  Y+ +I+G CK  K  EA  VF  + ERGY P+   Y+++I 
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            L K   L  A K+   M+     PN   Y  MI G C++   +EA RL   M +KG   
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             VTY  +I G    G+ D+   L  +M  KG   + +TY  LI   C  G
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 165/405 (40%), Gaps = 38/405 (9%)

Query: 58  EQTLLSDI-----PSFNFNDPLFFREFLKQQNNVL------------LSIRFFQWLHSHY 100
           +  L+SD+       F      F R+F ++ N  L            L ++FF W     
Sbjct: 97  DAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQI 156

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEEA 157
           G+       + L + L      +V   FL              L + I+  C +GL   A
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +LK++G   S  T+N+ +   ++ DR D  + ++ ++ +SG+          +  
Sbjct: 217 LEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHL 276

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+  E   L+ +   +    +   + ++IS  CE   F    + L  M + +  P+
Sbjct: 277 LCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G  + R+     R+ + +   G  P   ++ ++IH  C+ G    A K+  
Sbjct: 334 VVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLK 393

Query: 329 EMIHKGLLPNEYTYNSMIHGYC------RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           +M   G  P    YN +I G C       +D LE A++ + EMLD       V  + L  
Sbjct: 394 KMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLAR 453

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LC  G+ ++AY +  EM  KG   D  TY+ +I   C   K+ N
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDN 498



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 148/390 (37%), Gaps = 91/390 (23%)

Query: 104  PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
            P++ +   L D L +A   K A D LD     G  PN    +  I   C+ G ++EA   
Sbjct: 634  PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 161  FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            F+K+ E G   ++ T++S +    K  R DL  K+   ++E+           +I   C 
Sbjct: 694  FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 212  DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             GK  E Y L+  + E G  P    +  +I  F +     +  EL+  M A+  AP+  T
Sbjct: 754  VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 272  YEEVINGLCKS-------------------------RKRLEAYR--------VFNDLKER 298
            Y  +IN  C +                         RK +E +         + +++ E 
Sbjct: 814  YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAEN 873

Query: 299  GYVPDTVMYTTVIHGLCKMGWL-------------------------------------G 321
              VP    Y  +I   CK G L                                      
Sbjct: 874  VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVD 933

Query: 322  DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH----KEMLD---KGYGETT 374
             A +++ +MI +G +P    +  ++ G  RI+  EEA +L     + M+D   +G+  ++
Sbjct: 934  KAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMMVDFVREGFLGSS 993

Query: 375  VTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
              Y  L   LC    T  +Y+L+ + A  G
Sbjct: 994  HDYEFLNWTLC--STTWASYYLWGQSAATG 1021


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 152/313 (48%), Gaps = 29/313 (9%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
            SP++V+ N +  +L +A+    AM+ L +   +G  P+  +    +   C SG  +EA 
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 171

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               K++  GV   + T+NS                          L+   C +G+ +E 
Sbjct: 172 VFLKKMRSDGVEPDVVTYNS--------------------------LMDYLCKNGRCTEA 205

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++   + + GL P+ T +  L+  +  K     +  LL  MV     P+++ +  ++  
Sbjct: 206 RKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 265

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             K  K  EA  VF+ ++++G  P+ V Y TVI  LCK G + DA   + +MI +GL P+
Sbjct: 266 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPD 325

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YNS+IH  C  D  E+A+ L  EMLD+G   +T+ +N++I   C  GR  E+  LF+
Sbjct: 326 SIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFD 385

Query: 399 EMAQKGIFRDVIT 411
            M + G+  D+IT
Sbjct: 386 LMVRIGVKPDIIT 398



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 159/337 (47%), Gaps = 21/337 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           PD+ S N+L + L +    + A++ L     D     P+  S    I    + G ++   
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD--- 105

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAF 209
               K+ +  +  ++ T+NS +    K    D   ++   +++SG +         +  F
Sbjct: 106 ----KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 161

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R   PD 
Sbjct: 162 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  ++ G       +E + + + +   G  P+  +++ ++    K   + +A  ++ +
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +GL PN  TY ++I   C+   +E+A    ++M+D+G    ++ YN+LI  LC+  +
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            ++A  LF EM  +GI    I +N++I  +CKEG+++
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 378



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 14/209 (6%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVIN 277
           ELLR+      +P+  ++N L++  C++       ELLH M     +  PD  +Y  VIN
Sbjct: 42  ELLRRG-----IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN 96

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K           + + ++   P+ V Y ++I  LCK   +  A ++   M+  G++P
Sbjct: 97  GFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMP 149

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYNS++HG+C     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F
Sbjct: 150 DCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIF 209

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + M ++G+  D+ TY TL+QGY  +G +V
Sbjct: 210 DSMTKRGLKPDITTYGTLLQGYATKGALV 238



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 76/361 (21%), Positives = 130/361 (36%), Gaps = 39/361 (10%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ +   L        +LVE       +D +   G  PN     + +    +   +
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGL---LDLMVRNGIHPNHYVFSILVCAYAKQEKV 272

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
           EEA   FSK+++ G+  +  T+ + +    K  R +     +  +I+ G          L
Sbjct: 273 EEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 332

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I + C   K  +  EL  ++L+ G+      FN +I   C++       +L   MV    
Sbjct: 333 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGV 392

Query: 266 APDNFTYEEVINGLCKSRKR-LEAYRVFNDLKERGYV--------------------PDT 304
            PD  T    +    +     +  Y +F ++   G                      P  
Sbjct: 393 KPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFL 452

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             Y  ++HGLCK     DA +M+  +    L     T+N MI    ++   +EAK L   
Sbjct: 453 GTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVA 512

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               G      TY  +   +   G  +E   LF  M   G   D    N +++   + G+
Sbjct: 513 FSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGE 572

Query: 425 I 425
           I
Sbjct: 573 I 573



 Score = 67.8 bits (164), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 63/291 (21%), Positives = 118/291 (40%), Gaps = 30/291 (10%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +PN  +    I  LC+SG +E+A   F ++ + G+      +NS +      D+ +  
Sbjct: 286 GLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKA 345

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L+ ++++ G          +I + C +G+V E  +L   ++  G+ P+     + +  
Sbjct: 346 EELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGRFLGS 405

Query: 244 --------------FCEKKNFGRVSELL-------HTMVARNRAPDNFTYEEVINGLCKS 282
                         F    N G   +         +T    +  P   TY  +++GLCK+
Sbjct: 406 ARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHGLCKN 465

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           +   +A R+F +L       +   +  +I  L K+G   +A+ ++      GL+PN +TY
Sbjct: 466 KLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 525

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
             M         LEE  +L   M D G    +   N ++  L   G    A
Sbjct: 526 RLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 576



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 31/133 (23%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLH------------------ 362
           DAR ++ E++ +G+ P+ ++YN +++G C  +  +EA + LH                  
Sbjct: 35  DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 363 -----------KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
                       +MLD+      VTYN++IA LC     D+A  +   M + G+  D +T
Sbjct: 94  VINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMT 153

Query: 412 YNTLIQGYCKEGK 424
           YN+++ G+C  G+
Sbjct: 154 YNSIVHGFCSSGQ 166


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 156/335 (46%), Gaps = 15/335 (4%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD  +   L   L +      A+  LD     G  PN  +  + ++ +C++   E+A  
Sbjct: 139 APDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMA 198

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTD----LVWKLYH-----DLIESGYLIQAFC 210
              +++  G   +I T+N  + G  +  R D    L+ +L+      D +    L++  C
Sbjct: 199 VLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLC 258

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              +  +  EL  +++E   +P    F+ LI  FC      R  ++L  M     A +  
Sbjct: 259 ASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTT 318

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
               VIN +CK  +  +A++  N++   G  PDT+ YTTV+ GLC+     DA+++  EM
Sbjct: 319 LCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEM 378

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +     PNE T+N+ I   C+   +E+A  L ++M + G     VTYN L+ G C+ G  
Sbjct: 379 VRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHI 438

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           D A  LF  M  K    + ITY TL+ G C   ++
Sbjct: 439 DSALELFRSMPCKP---NTITYTTLLTGLCNAERL 470



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 137/295 (46%), Gaps = 6/295 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G +P+       I+ LC  G   +A       +  G    +  +N+ + G  +    D  
Sbjct: 70  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 129

Query: 193 WKLYHDL--IESGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            +L   +      Y    LI+  C+ G+V++   LL  +L  G  P    +  L+   C+
Sbjct: 130 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCK 189

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
              F +   +L  M A+   P+  TY  +ING+C+  +  +A  + N L   G  PDTV 
Sbjct: 190 NSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVS 249

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           YTT++ GLC      D  +++ EM+ K  +PNE T++ +I  +CR   +E A ++ ++M 
Sbjct: 250 YTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMT 309

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +      T   N +I  +C  GR D+A+     M   G   D I+Y T+++G C+
Sbjct: 310 EHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCR 364



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 151/338 (44%), Gaps = 15/338 (4%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  PD VS   L   L  ++ +    +    +      PN  + ++ I+  C  G++E 
Sbjct: 241 YGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVER 300

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
           A     ++ E     +    N  +    K  R D  +K  +         D I    +++
Sbjct: 301 AIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLK 360

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C   + ++  ELL++++ +   P    FN  I   C+K    +   L+  M       
Sbjct: 361 GLCRAERWNDAKELLKEMVRNNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTV 420

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  ++NG C       A  +F  +  +   P+T+ YTT++ GLC    L  A ++ 
Sbjct: 421 GVVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDAAAELV 477

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+H+   PN  T+N +++ +C+   L+EA  L ++M++ G     +TYNTL  G+   
Sbjct: 478 AEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKD 537

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +++A  L   +  KG+  DVIT++++I    KE ++
Sbjct: 538 CSSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRV 575



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/345 (24%), Positives = 144/345 (41%), Gaps = 33/345 (9%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNP 138
           +Q  V  + +F   + S YG +PD +S   +   L  A  +  A + L         PN 
Sbjct: 329 KQGRVDDAFKFLNNMGS-YGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNE 387

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +   +I  LC+ GLIE+A     +++E G    + T+N+                    
Sbjct: 388 VTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNA-------------------- 427

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+  FC  G +    EL R +      P    +  L++  C  +     +EL+ 
Sbjct: 428 ------LVNGFCVQGHIDSALELFRSM---PCKPNTITYTTLLTGLCNAERLDAAAELVA 478

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+ R+  P+  T+  ++N  C+     EA  +   + E G  P+ + Y T+  G+ K  
Sbjct: 479 EMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDC 538

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              DA ++   ++ KG+ P+  T++S+I    + D +EEA ++     D G     + YN
Sbjct: 539 SSEDALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYN 598

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            ++ GLC     D A      M   G   +  TY  LI+G  +EG
Sbjct: 599 KILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREG 643



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 3/197 (1%)

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           DG  P+     KLI   C +      + +L          D F Y  ++ G C+      
Sbjct: 69  DGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDA 128

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A R+   +      PD   YT +I  LC  G + DA  +  +M+ +G  PN  TY  ++ 
Sbjct: 129 ARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTVLLE 185

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             C+    E+A  +  EM  KG     VTYN +I G+C  GR D+A  L   +   G   
Sbjct: 186 AMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQP 245

Query: 408 DVITYNTLIQGYCKEGK 424
           D ++Y TL++G C   +
Sbjct: 246 DTVSYTTLLKGLCASKR 262



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 12/210 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+ ++   L   L  A     A + +         PN  +  + +   C+ G ++EA   
Sbjct: 452 PNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIEL 511

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++ E G   ++ T+N+   G  K   ++   +L H L+  G          +I     
Sbjct: 512 VEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGILSK 571

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           + +V E  ++     + G+ P+   +NK++   C++       + L  MV+    P+  T
Sbjct: 572 EDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNEST 631

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
           Y  +I GL +     EA  + + L  RG V
Sbjct: 632 YIILIEGLAREGLLKEAQDLLSMLCSRGVV 661



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
           G AR +       G  P+ Y    +I   CR     +A R+ +     G       YNTL
Sbjct: 57  GAARLVELSASRDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTL 116

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           +AG C +G  D A  L   M    +  D  TY  LI+  C  G++ +
Sbjct: 117 VAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLCDRGRVAD 160


>gi|357129487|ref|XP_003566393.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial-like [Brachypodium distachyon]
          Length = 837

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/304 (28%), Positives = 145/304 (47%), Gaps = 9/304 (2%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S    PN +S  + +  LC+   ++ A      +  +G  G +  +N  +     +DR D
Sbjct: 433 SEDVKPNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLD 492

Query: 191 LVWKLYH-----DLIESGY----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
             +K+++      LI S +    L    C     +   +LLR +  +G  P      +++
Sbjct: 493 EGYKMFNLMKNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMV 552

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
            + C         + L  M+     PD  TY   +NGLCK+ +   A  +F D+  + Y+
Sbjct: 553 QQLCISGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYL 612

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD V +  +I+G    G L +A+++  EM+ KGL P+  TYN MI  +C+  N+E+A   
Sbjct: 613 PDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEKAIAC 672

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             +M+D+    T VTY +LI GLC  GR DEA  L+ +M  KG   + I Y   + G CK
Sbjct: 673 LNKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVNGLCK 732

Query: 422 EGKI 425
             ++
Sbjct: 733 RARV 736



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 82/320 (25%), Positives = 139/320 (43%), Gaps = 12/320 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL-DSTGFSPNPNSLEL--YIQCLCESGLIEEAFCA 160
           P+  S N++   L + +    A+  + D TG       L     I  LC    ++E +  
Sbjct: 438 PNSDSFNIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKM 497

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F+ +K +G+  S  T+NS   G  +    +    L  D+  +G+         ++Q  C 
Sbjct: 498 FNLMKNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCI 557

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+++E  + L ++L+ G +P+   ++  ++  C+         +   + ++   PD   
Sbjct: 558 SGRITEALQFLDEMLKMGFLPDIVTYSAAMNGLCKTGEVDNALGIFRDISSKYYLPDVVA 617

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           +  +ING   S K  EA  V  ++ E+G  P  V Y  +I   CK G +  A     +MI
Sbjct: 618 HNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTYNLMIDVWCKSGNIEKAIACLNKMI 677

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            +   P   TY S+I G C     +EA  L  +M+DKG     + Y   + GLC   R D
Sbjct: 678 DEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMDKGCAPNKIAYTAFVNGLCKRARVD 737

Query: 392 EAYHLFEEMAQKGIFRDVIT 411
            A   +EEM  KG   D  +
Sbjct: 738 TALTYYEEMMTKGFELDTFS 757



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 75/327 (22%), Positives = 142/327 (43%), Gaps = 35/327 (10%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  +L + +    +   +++A   F K+   G    +  ++  + G  +       
Sbjct: 275 GMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKA 334

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEG----YELLRQVLEDGLVPENTAFNK 239
            KL+ ++              +++AFC +G  +       E  RQ+   G++     FN 
Sbjct: 335 VKLFEEMKRGEVAPDARLLKKMLEAFCREGDFAIAGLFINENARQLKPSGVI---ALFNV 391

Query: 240 LISRFCEKKNFGRVSELLHTMV-------------------ARNRAPDNFTYEEVINGLC 280
           ++  F          +LL +M+                   + +  P++ ++  V+ GLC
Sbjct: 392 VLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSFNIVVCGLC 451

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K +K   A  +  D+   G     +M+  +IH LC +  L +  KM+  M + GL+P+E+
Sbjct: 452 KVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLMKNLGLIPSEF 511

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TYNS+ +G CR  +   A  L ++M   G+         ++  LC+ GR  EA    +EM
Sbjct: 512 TYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCISGRITEALQFLDEM 571

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIVN 427
            + G   D++TY+  + G CK G++ N
Sbjct: 572 LKMGFLPDIVTYSAAMNGLCKTGEVDN 598



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 79/313 (25%), Positives = 130/313 (41%), Gaps = 29/313 (9%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESG 152
           L  + G  P   + N LF  +   +    A+D L    + G  P   +    +Q LC SG
Sbjct: 500 LMKNLGLIPSEFTYNSLFYGICRRKDPNCALDLLRDMRTNGHRPWIKNCTEMVQQLCISG 559

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
            I EA     ++ +MG    I T+++A+ G                           C  
Sbjct: 560 RITEALQFLDEMLKMGFLPDIVTYSAAMNG--------------------------LCKT 593

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G+V     + R +     +P+  A N LI+ F          E++  M+ +   P   TY
Sbjct: 594 GEVDNALGIFRDISSKYYLPDVVAHNILINGFRISGKLSEAQEVMEEMLEKGLFPSIVTY 653

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+  CKS    +A    N + +    P  V YT++I GLC  G   +A  +W +M+ 
Sbjct: 654 NLMIDVWCKSGNIEKAIACLNKMIDEEESPTVVTYTSLIDGLCSTGRPDEAIALWHKMMD 713

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KG  PN+  Y + ++G C+   ++ A   ++EM+ KG+   T +    I  L   G   +
Sbjct: 714 KGCAPNKIAYTAFVNGLCKRARVDTALTYYEEMMTKGFELDTFSCLYFINFLISTGNATK 773

Query: 393 AYHLFEEMAQKGI 405
              L +E+ QK I
Sbjct: 774 GCELLKEVLQKDI 786



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/379 (21%), Positives = 134/379 (35%), Gaps = 87/379 (22%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY-----IQCLCESGLIEEA 157
           +P+  + N L D+L +A     A   L          S++ Y     +QC C +G  ++A
Sbjct: 171 TPNSYTFNCLLDTLAKAGRADDAEARLQEMVVRCGDESVDKYTLTSLLQCYCNAGRPDDA 230

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              F ++ + G                        W   H L     L  AF   GKV  
Sbjct: 231 NGVFERMSQRG------------------------WVDEHVLT---ILAVAFSKWGKVDG 263

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             ELL ++   G+ P     + L+  F ++    +  E+   M +         Y  +I 
Sbjct: 264 AVELLGRMELLGMRPSEKTLSVLVHGFAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIE 323

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDT--------------------------------- 304
           GLC+ ++  +A ++F ++K     PD                                  
Sbjct: 324 GLCQKKEIGKAVKLFEEMKRGEVAPDARLLKKMLEAFCREGDFAIAGLFINENARQLKPS 383

Query: 305 ---VMYTTVIHGLCKMGWLGDARKMWFEMIHKG-------------------LLPNEYTY 342
               ++  V+ G    G    A ++   MI  G                   + PN  ++
Sbjct: 384 GVIALFNVVLEGFVNHGQAEAAYQLLTSMIRGGQGISDGVTVGAHVVDISEDVKPNSDSF 443

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N ++ G C++  L+ A  L K+M   G     + +N LI  LC   R DE Y +F  M  
Sbjct: 444 NIVVCGLCKVKKLDNALALIKDMTGIGCKGKLLMFNDLIHELCSLDRLDEGYKMFNLMKN 503

Query: 403 KGIFRDVITYNTLIQGYCK 421
            G+     TYN+L  G C+
Sbjct: 504 LGLIPSEFTYNSLFYGICR 522



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/195 (25%), Positives = 90/195 (46%), Gaps = 3/195 (1%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR--NRAPDNFTYEEVINGLCKSRKRLEA 288
            P +  FN L+    +          L  MV R  + + D +T   ++   C + +  +A
Sbjct: 171 TPNSYTFNCLLDTLAKAGRADDAEARLQEMVVRCGDESVDKYTLTSLLQCYCNAGRPDDA 230

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             VF  + +RG+V + V+ T +     K G +  A ++   M   G+ P+E T + ++HG
Sbjct: 231 NGVFERMSQRGWVDEHVL-TILAVAFSKWGKVDGAVELLGRMELLGMRPSEKTLSVLVHG 289

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           + +   L++A  +  +M   G+      Y+ LI GLC      +A  LFEEM +  +  D
Sbjct: 290 FAKQLRLDKAMEMFDKMGSYGFVAGLPMYSVLIEGLCQKKEIGKAVKLFEEMKRGEVAPD 349

Query: 409 VITYNTLIQGYCKEG 423
                 +++ +C+EG
Sbjct: 350 ARLLKKMLEAFCREG 364


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/333 (26%), Positives = 159/333 (47%), Gaps = 12/333 (3%)

Query: 105 DLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           D+ +  VL + L +      A+++L   +   + PN       +  LC+ GL+ EA    
Sbjct: 181 DVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLC 240

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
           S++   GV  ++ T+   + G     R      L  ++I+ G          L+ AFC +
Sbjct: 241 SEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKE 300

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           GKV +   ++  ++  G  P+   +N LI  +C +        + H MV+R   PD   +
Sbjct: 301 GKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVF 360

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             +I+G CK +   +   +  ++ + G+VPD V +TT+I G C+ G    A++++  M  
Sbjct: 361 TSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHK 420

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
            G +PN  T   ++ G C+ + L EA  L + M         V Y+ L+ G+C  G+ + 
Sbjct: 421 YGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNA 480

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           A+ LF  +  KG+  +V TY  +I+G CK+G +
Sbjct: 481 AWELFSSLPGKGLQINVYTYTIMIKGLCKQGSL 513



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 156/353 (44%), Gaps = 14/353 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTGFSPNPNS 140
           N+  ++  FQ + S     P +    +L   +V  + +  A+  +     S G   +  +
Sbjct: 56  NIDEALDLFQGMASMKPL-PSVKDFTLLLGVIVRLKHYTTAISLVKHIFSSLGIEADTIT 114

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYH-- 197
           L + I CLC   L+   F     + ++G+  ++ T  + + G C++ +    V  + H  
Sbjct: 115 LNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQAVGLVDHME 174

Query: 198 ------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
                 D+   G LI   C  G      E LR++ E    P    ++ ++   C+     
Sbjct: 175 KMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVS 234

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               L   M  +   P+  TY  +I GLC   +  E   + +++ + G   D      ++
Sbjct: 235 EALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILV 294

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
              CK G +  A+ +   MI  G  P+ +TYNS+IH YC  + + EA R+   M+ +G  
Sbjct: 295 DAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCL 354

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
              V + +LI G C     ++  HL EEMA+ G   DV+T+ TLI G+C+ G+
Sbjct: 355 PDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGR 407



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 133/292 (45%), Gaps = 15/292 (5%)

Query: 148 LCESGL---IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-----IDRTDLVWKLYH-- 197
           LC+SG    I+EA   F  +  M    S+K + + LLG I           LV  ++   
Sbjct: 48  LCKSGKVKNIDEALDLFQGMASMKPLPSVKDF-TLLLGVIVRLKHYTTAISLVKHIFSSL 106

Query: 198 ----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253
               D I    +I   C    V+ G+ +L  + + GL P       LI+  C + N  + 
Sbjct: 107 GIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTALINGLCVQGNVAQA 166

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L+  M       D +TY  +INGLCK+   L A      ++ER + P+ V+Y+T++ G
Sbjct: 167 VGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERNWKPNVVVYSTIMDG 226

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           LCK G + +A  +  EM  KG+ PN  TY  +I G C     +E   L  EM+  G    
Sbjct: 227 LCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLD 286

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             T N L+   C  G+  +A  +   M   G   DV TYN+LI  YC + K+
Sbjct: 287 LQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKM 338



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 148/372 (39%), Gaps = 49/372 (13%)

Query: 89  SIRFFQWLHS--HYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLEL 143
           ++   +WL       + P++V  + + D L +      A++    +   G  PN  +   
Sbjct: 198 TLAAVEWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYAC 257

Query: 144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
            IQ LC  G  +E      ++ +MG+   ++T N  +    K  +      +   +I +G
Sbjct: 258 LIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTG 317

Query: 204 ---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     LI  +C   K++E   +   ++  G +P+   F  LI  +C+ KN  +V 
Sbjct: 318 EGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVM 377

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD----------- 303
            LL  M      PD  T+  +I G C++ + L A  +F ++ + G VP+           
Sbjct: 378 HLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGL 437

Query: 304 ------------------------TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
                                    V+Y+ ++ G+C  G L  A +++  +  KGL  N 
Sbjct: 438 CKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINV 497

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           YTY  MI G C+  +L++A+ L   M + G      TYN  + GL        +      
Sbjct: 498 YTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTI 557

Query: 400 MAQKGIFRDVIT 411
           M  KG   D  T
Sbjct: 558 MRDKGFSVDAAT 569



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/242 (21%), Positives = 96/242 (39%), Gaps = 13/242 (5%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPN 139
           QN +  ++R F  + S  G  PD+V    L     + +     M  L+     GF P+  
Sbjct: 335 QNKMNEAMRVFHLMVSR-GCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVV 393

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-------IDRTDLV 192
           +    I   C++G    A   F  + + G   +++T    L G  K       +   + +
Sbjct: 394 TWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAM 453

Query: 193 WKLYHDL--IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
            K   DL  +    L+   C+ GK++  +EL   +   GL      +  +I   C++ + 
Sbjct: 454 EKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTIMIKGLCKQGSL 513

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            +  +LL  M      PDN TY   + GL   ++   + +    ++++G+  D       
Sbjct: 514 DKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTEIT 573

Query: 311 IH 312
           I+
Sbjct: 574 IN 575


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 152/330 (46%), Gaps = 12/330 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +   L ++L +A   + A  F D+    G +PN  +  L +    + G ++ A
Sbjct: 130 GSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMA 189

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F+++K  G   S+ T+N  L       R     KL+H +   G          L+  
Sbjct: 190 LGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNG 249

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G+V E +++ R++++ G+  +   +N L++   +  N  RV +L+  M  +   PD
Sbjct: 250 LGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPD 309

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F++  +++ L K+ K   A  VF  + E G  PD + Y  +I    + G    AR+M  
Sbjct: 310 AFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLE 369

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+  G +P   TYNS+IH       ++EA  + +EM   G     VTYN L+  L   G
Sbjct: 370 EMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRG 429

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
               A  LF++M  KG+  D ++Y   I G
Sbjct: 430 ENQRAARLFQQMKDKGVEPDTLSYAVRIDG 459



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 147/301 (48%), Gaps = 9/301 (2%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  +    +  L ++G ++EA   F  + E G+  +I T+N  +    K+ + D+ 
Sbjct: 130 GSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMA 189

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L+ ++   G+         L+ A C+ G+V    +L  ++  DG  P++  ++ L++ 
Sbjct: 190 LGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNG 249

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             +        ++   MV R  A D   Y  ++  L K+      +++  ++  +G+ PD
Sbjct: 250 LGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPD 309

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
              + T++  L K      AR+++  M+  G  P+  +YN +I  Y R  +  +A+++ +
Sbjct: 310 AFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLE 369

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EM++ G+   T TYN+LI  L   G+ DEA+ + EEM   G   DV+TYN L+    K G
Sbjct: 370 EMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRG 429

Query: 424 K 424
           +
Sbjct: 430 E 430



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 141/299 (47%), Gaps = 15/299 (5%)

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVWK 194
           PN+L   I          +AF  F++ +      ++  +      L+   + +R +LV+K
Sbjct: 30  PNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYK 89

Query: 195 LYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
               L++ G          LI+ F   G++    E+ R++   G  P+   +  L++   
Sbjct: 90  ---KLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALG 146

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
           +             M+ R   P+  TY  +++   K  +   A  +F ++K RG+ P  V
Sbjct: 147 KAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVV 206

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            Y  ++  LC  G +G ARK++ +M   G  P+ YTY+++++G  +   +EEA ++ +EM
Sbjct: 207 TYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREM 266

Query: 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +D+G     V YN+L+A L   G  D  + L +EM++KG   D  ++NT++    K  K
Sbjct: 267 VDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANK 325



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 158/369 (42%), Gaps = 35/369 (9%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
           E+ L  +IP++N        +  ++   + +++  F  +    GF P +V+ N+L D+L 
Sbjct: 163 ERGLTPNIPTYNL-----LMDAFRKVGQLDMALGLFAEMKRR-GFQPSVVTYNILLDALC 216

Query: 118 EARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
            A     A      +   G SP+  +    +  L +SG +EEA   F ++ + GV   + 
Sbjct: 217 SAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLV 276

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            +NS L    K    D VWKL                          ++++   G  P+ 
Sbjct: 277 NYNSLLATLAKAGNMDRVWKL--------------------------MKEMSRKGFHPDA 310

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            +FN ++    +        E+   MV     PD  +Y  +I+   +     +A ++  +
Sbjct: 311 FSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEE 370

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + E G++P+T  Y ++IH L   G + +A  +  EM   G  P+  TYN ++    +   
Sbjct: 371 MVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGE 430

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            + A RL ++M DKG    T++Y   I GL    R DEA  LF++M   G   D   Y  
Sbjct: 431 NQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRI 490

Query: 415 LIQGYCKEG 423
           LI+   + G
Sbjct: 491 LIRAAHRAG 499



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 68/221 (30%), Positives = 105/221 (47%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI A+    K  + ++L  Q       P   AF KLI        F R   +   +V + 
Sbjct: 36  LITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILVNSGEFERAELVYKKLVQKG 95

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
              D F Y  +I    +S +   A  +F ++K +G  PD   Y  +++ L K G + +AR
Sbjct: 96  CQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEAR 155

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
             +  M+ +GL PN  TYN ++  + ++  L+ A  L  EM  +G+  + VTYN L+  L
Sbjct: 156 SFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDAL 215

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  GR   A  LF +M   G   D  TY+TL+ G  K G++
Sbjct: 216 CSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRV 256



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 97/205 (47%)

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LL++++ +G         KLI+ +      G   +L +   +   +P    + ++I+ L 
Sbjct: 17  LLKEMVAEGRPLRPNTLVKLITAYGRGNKSGDAFDLFNQAESFACSPTVHAFTKLIDILV 76

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
            S +   A  V+  L ++G   D   Y  +I    + G L  A +M+ EM  KG  P+EY
Sbjct: 77  NSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEMFREMKIKGSEPDEY 136

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           TY  +++   +   ++EA+     ML++G      TYN L+      G+ D A  LF EM
Sbjct: 137 TYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEM 196

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKI 425
            ++G    V+TYN L+   C  G++
Sbjct: 197 KRRGFQPSVVTYNILLDALCSAGRV 221


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 142/292 (48%), Gaps = 17/292 (5%)

Query: 149 CESGLIE--EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------- 197
           C++G I+  +AF  F  +        I ++N  L G  KI+    ++ LY+         
Sbjct: 64  CKTGNIDVIQAFHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSP 123

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF---CEKKNFGRVS 254
           DL     L    CN  +VSEG   +  +L  G +P+   +N LI      C+  +     
Sbjct: 124 DLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAK 183

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           E+   M A+   P+  +Y  +++G C + K  E+ R+FN++ ++G  P+ V +  +I  L
Sbjct: 184 EIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDIL 243

Query: 315 CKMGWLGD---ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           CK G +GD   ARK++  M  KG   NE +Y  +I+GYC+I  +EEA  L+ EM   G  
Sbjct: 244 CKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKR 303

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               TY+TL+ GL   G+  +A  LF  M   GI  D   Y   + G CK G
Sbjct: 304 PNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNG 355



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 171/373 (45%), Gaps = 19/373 (5%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SF      F R       +V+ +  FF  +   +   P + S N L   L +   +    
Sbjct: 52  SFQHRLSSFLRNCKTGNIDVIQAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLF 110

Query: 127 DFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS---AL 180
              +     G SP+  +L +   CLC    + E   A + +   G    I T+N+    L
Sbjct: 111 SLYNKMRLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGL 170

Query: 181 LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
            G  K+   D   +++ ++   G          L+  FC  GK+ E   L  ++++ G+ 
Sbjct: 171 YGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQ 230

Query: 232 PENTAFNKLISRFCEKKNFGRVS---ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           P    FN LI   C++   G +S   +L  +M ++    +  +Y  +ING CK  K  EA
Sbjct: 231 PNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEA 290

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             ++N++ + G  P+   Y+T++ GL + G +GDA K++  M   G+  +   Y   + G
Sbjct: 291 MNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDG 350

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+   L EA  L  E+    +     +Y+ LI GLC  G+ + A+  F++++Q+G+  +
Sbjct: 351 LCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPN 410

Query: 409 VITYNTLIQGYCK 421
           V+T N +I G+C+
Sbjct: 411 VVTCNIMIHGFCR 423



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 155/326 (47%), Gaps = 25/326 (7%)

Query: 101 GFSPDLVSCNVLFDSLV-------EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153
           G+ PD+V+ N L   L        E  A K   + + + G  PN  S    +   C +G 
Sbjct: 155 GYIPDIVTYNTLIKGLYGLCKVGHEDEA-KEIFEEMKAQGMIPNVISYSSLVHGFCCAGK 213

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCI----KIDRTDLVWKLY---------HDLI 200
           +EE+   F+++ + GV  ++  +N  L+  +    KI       KL+         H+ I
Sbjct: 214 LEESKRLFNEMVDQGVQPNLVQFN-VLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEI 272

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI  +C   KV E   L  ++ + G  P    ++ L++   +    G  ++L   M
Sbjct: 273 SYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVM 332

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
            A   + D+  Y   ++GLCK+    EA  +FN+LK   +  D   Y+ +I GLCK G +
Sbjct: 333 KASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKV 392

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL---HKEMLDKGYGETTVTY 377
             A + + ++  +GL PN  T N MIHG+CR++ +++A  L    ++M + G     +TY
Sbjct: 393 EIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITY 452

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQK 403
           NTL+ G C   + +E  +L  +M ++
Sbjct: 453 NTLLRGFCESNKLEEVVNLLHKMFKR 478



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 12/149 (8%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           + ++G S +     +++  LC++G++ EA   F++LK        ++++  + G  K  +
Sbjct: 332 MKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGK 391

Query: 189 TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEG---YELLRQVLEDGLVPENTA 236
            ++ W+ +  L + G          +I  FC   +V +    +E + ++ E+G  P+   
Sbjct: 392 VEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIIT 451

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNR 265
           +N L+  FCE      V  LLH M  R R
Sbjct: 452 YNTLLRGFCESNKLEEVVNLLHKMFKRMR 480


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 152/313 (48%), Gaps = 29/313 (9%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAF 158
            SP++V+ N +  +L +A+    AM+ L +   +G  P+  +    +   C SG  +EA 
Sbjct: 112 ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPKEAI 171

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218
               K++  GV   + T+NS                          L+   C +G+ +E 
Sbjct: 172 VFLKKMRSDGVEPDVVTYNS--------------------------LMDYLCKNGRCTEA 205

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
            ++   + + GL P+ T +  L+  +  K     +  LL  MV     P+++ +  ++  
Sbjct: 206 RKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCA 265

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
             K  K  EA  VF+ ++++G  P+ V Y TVI  LCK G + DA   + +MI +GL P+
Sbjct: 266 YAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPD 325

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              YNS+IH  C  D  E+A+ L  EMLD+G   +T+ +N++I   C  GR  E+  LF+
Sbjct: 326 SIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFD 385

Query: 399 EMAQKGIFRDVIT 411
            M + G+  D+IT
Sbjct: 386 LMVRIGVKPDIIT 398



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 4/289 (1%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG--VFGSIKTWNSALLGCIKIDRTD--L 191
           P+  S  + +  LC+    +EA      + + G      + ++++ + G  K    D  L
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLDKML 108

Query: 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             ++  +++    +I A C    V +  E+L  +++ G++P+   +N ++  FC      
Sbjct: 109 DQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFCSSGQPK 168

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
                L  M +    PD  TY  +++ LCK+ +  EA ++F+ + +RG  PD   Y T++
Sbjct: 169 EAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDITTYGTLL 228

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
            G    G L +   +   M+  G+ PN Y ++ ++  Y + + +EEA  +  +M  +G  
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKMRQQGLN 288

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
              VTY T+I  LC  GR ++A   FE+M  +G+  D I YN+LI   C
Sbjct: 289 PNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLC 337



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 159/337 (47%), Gaps = 21/337 (6%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL-----DSTGFSPNPNSLELYIQCLCESGLIEEAF 158
           PD+ S N+L + L +    + A++ L     D     P+  S    I    + G ++   
Sbjct: 49  PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVINGFFKEGDLD--- 105

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQAF 209
               K+ +  +  ++ T+NS +    K    D   ++   +++SG +         +  F
Sbjct: 106 ----KMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGF 161

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+  E    L+++  DG+ P+   +N L+   C+        ++  +M  R   PD 
Sbjct: 162 CSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDI 221

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  ++ G       +E + + + +   G  P+  +++ ++    K   + +A  ++ +
Sbjct: 222 TTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M  +GL PN  TY ++I   C+   +E+A    ++M+D+G    ++ YN+LI  LC+  +
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            ++A  LF EM  +GI    I +N++I  +CKEG+++
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVI 378



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/209 (32%), Positives = 110/209 (52%), Gaps = 14/209 (6%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV--ARNRAPDNFTYEEVIN 277
           ELLR+      +P+  ++N L++  C++       ELLH M     +  PD  +Y  VIN
Sbjct: 42  ELLRRG-----IPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVIN 96

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G  K           + + ++   P+ V Y ++I  LCK   +  A ++   M+  G++P
Sbjct: 97  GFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMP 149

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYNS++HG+C     +EA    K+M   G     VTYN+L+  LC +GR  EA  +F
Sbjct: 150 DCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIF 209

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + M ++G+  D+ TY TL+QGY  +G +V
Sbjct: 210 DSMTKRGLKPDITTYGTLLQGYATKGALV 238



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 64/299 (21%), Positives = 114/299 (38%), Gaps = 45/299 (15%)

Query: 101 GFSPDLVSCNVLFD------SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           G  PD+ +   L        +LVE       +D +   G  PN     + +    +   +
Sbjct: 216 GLKPDITTYGTLLQGYATKGALVEMHGL---LDLMVRNGIHPNHYVFSILVCAYAKQEKV 272

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           EEA   FSK+++ G+  +  T+                          G +I   C  G+
Sbjct: 273 EEAMLVFSKMRQQGLNPNAVTY--------------------------GTVIDVLCKSGR 306

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V +      Q++++GL P++  +N LI   C    + +  EL   M+ R        +  
Sbjct: 307 VEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNS 366

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I+  CK  + +E+ ++F+ +   G  PD +           +G   +A+ ++      G
Sbjct: 367 IIDSHCKEGRVIESGKLFDLMVRIGVKPDII----------TLGRNDEAKDLFVAFSSNG 416

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           L+PN +TY  M         LEE  +L   M D G    +   N ++  L   G    A
Sbjct: 417 LVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRA 475



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 65/133 (48%), Gaps = 31/133 (23%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLH------------------ 362
           DAR ++ E++ +G+ P+ ++YN +++G C  +  +EA + LH                  
Sbjct: 35  DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYST 93

Query: 363 -----------KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
                       +MLD+      VTYN++IA LC     D+A  +   M + G+  D +T
Sbjct: 94  VINGFFKEGDLDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMT 153

Query: 412 YNTLIQGYCKEGK 424
           YN+++ G+C  G+
Sbjct: 154 YNSIVHGFCSSGQ 166


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 148/311 (47%), Gaps = 17/311 (5%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKID 187
           +D  G   N  +  + +Q LC  G + +A   F    E+      + ++ + + G  K+ 
Sbjct: 1   MDVEGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLG 60

Query: 188 RTDLVWKLYHDLIESG----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
           R D  + L+  ++ +G           L+   C   ++     ++ +  +    P+   +
Sbjct: 61  RVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTY 120

Query: 238 NKLISRFCEKKNFGRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           N L++   +    GRV E L T   M      P   ++  +I GLC++R+  +A  VFN+
Sbjct: 121 NTLMAALFQ---LGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNE 177

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + +R + P+ V Y+ VI GLCK   L +A+++   M+ +G  P+   Y  ++ G+     
Sbjct: 178 MIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGR 237

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           L+ A  L + M+ +G     VTY  +I  LC  GR D+A+ +F E+       +V+TY+ 
Sbjct: 238 LDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSA 297

Query: 415 LIQGYCKEGKI 425
           LI GYC+  ++
Sbjct: 298 LIGGYCRASRV 308



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 150/325 (46%), Gaps = 48/325 (14%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALLGCIKIDRTDLVWK 194
           P+  S    I  LC+ G ++ AF  F K+   G    +  T+N+ + G  K DR D    
Sbjct: 44  PDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARA 103

Query: 195 LYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           +           D++    L+ A    G+V E      Q+ E+G VP   +FN +I+  C
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 163

Query: 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-------- 297
             +      E+ + M+ R+  P+  TY  VI+GLCKS +  EA ++ + +          
Sbjct: 164 RARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLV 223

Query: 298 ---------------------------RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
                                      +G +PD V YT VI  LCK+G + DA +++ E+
Sbjct: 224 AYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFREL 283

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           +     PN  TY+++I GYCR   ++E  ++ +EM  +      VTYNT+I GL +  R 
Sbjct: 284 VANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRN 340

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTL 415
           +EAY +F EM++ G   D  TY  L
Sbjct: 341 EEAYGMFREMSECGFVPDARTYRGL 365



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/159 (33%), Positives = 91/159 (57%), Gaps = 2/159 (1%)

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           T   ++ GLC+  +  +A   F+   E  +  PD V YTT+I+GLCK+G +  A  ++ +
Sbjct: 12  TTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRK 71

Query: 330 MIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           M+  G   PN +TYN+++ G C+ D L+ A+ +  E   + +    VTYNTL+A L   G
Sbjct: 72  MVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLG 131

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           R DEA   F +M ++G    ++++N +I G C+  ++ +
Sbjct: 132 RVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLAD 170



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/265 (24%), Positives = 119/265 (44%), Gaps = 15/265 (5%)

Query: 102 FSPDLVSCNVLFDSLVE-ARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAF 158
           F+PD+V+ N L  +L +  R  +    F   T  G+ P   S    I  LC +  + +A 
Sbjct: 113 FAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADAL 172

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAF 209
             F+++ +     ++ T++  + G  K D+ D   +L   ++  G          L+  F
Sbjct: 173 EVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 232

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
              G++     LLR+++  G +P+   +  +I + C+        E+   +VA   +P+ 
Sbjct: 233 SAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNV 292

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  +I G C++ +  E  +V  ++  R   P+ V Y T+I GL  +    +A  M+ E
Sbjct: 293 VTYSALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFRE 349

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDN 354
           M   G +P+  TY  +      ID+
Sbjct: 350 MSECGFVPDARTYRGLKRALRMIDH 374


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 138/291 (47%), Gaps = 15/291 (5%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK---TWNSALLGCIKIDRT 189
           GF P+       I  +C  G  E    A   LKEMG+ G +    T NS + G     + 
Sbjct: 105 GFKPDVVIFTTLIDGVCRIGKTE---LAAGLLKEMGLVGCVPDVVTCNSLMRGYCSQGKI 161

Query: 190 DLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL 240
           D V K++H ++  G           I  +C   K+ E  EL  ++   G+VP    +N L
Sbjct: 162 DKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTL 221

Query: 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
           I   C+         L   M A   +PD   Y  +++G CK     E   +F +++ R  
Sbjct: 222 IKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLV 281

Query: 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
            PD V+YT +I+G+C+   + DA+++   +I +GL P+ +TY +++ G CR  ++ EA R
Sbjct: 282 KPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALR 341

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           L ++M + G    + +YN L+ G   H  T     L  EMA +G + D +T
Sbjct: 342 LFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVT 392



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 149/326 (45%), Gaps = 29/326 (8%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++  N L  S+V  + ++  +     ++  G   N  +L + I C C    ++  F  
Sbjct: 38  PPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSILINCFCFLHHVDYGFSV 97

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           F K  + G    +  + +                          LI   C  GK      
Sbjct: 98  FGKTLKRGFKPDVVIFTT--------------------------LIDGVCRIGKTELAAG 131

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LL+++   G VP+    N L+  +C +    +V ++ H MV++   PD ++Y   ING C
Sbjct: 132 LLKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYC 191

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K  K  EA  +F+++  RG VP+ V Y T+I  LC+     DA+ ++ +M   GL P+  
Sbjct: 192 KVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDIL 251

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
            Y++++ G+C+  NL+E   L +EM  +      V Y  +I G+C   +  +A  +   +
Sbjct: 252 AYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRL 311

Query: 401 AQKGIFRDVITYNTLIQGYCKEGKIV 426
             +G+  DV TY  L+ G C+EG I+
Sbjct: 312 IVEGLKPDVHTYTALVDGLCREGSII 337



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 135/283 (47%), Gaps = 9/283 (3%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           G +++A  +F+++ +      I  +N  L   +++ + + V  L+ ++   G        
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             LI  FC    V  G+ +  + L+ G  P+   F  LI   C        + LL  M  
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGL 138

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  T   ++ G C   K  +  ++F+ +  +G  PD   Y+  I+G CK+  + +
Sbjct: 139 VGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDE 198

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM H+G++PN  TYN++I   C+     +A+ L ++M   G     + Y+TL+ 
Sbjct: 199 AMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLD 258

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C  G  DE   LF+EM ++ +  D++ Y  +I G C+  K+
Sbjct: 259 GFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKV 301



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 60/291 (20%), Positives = 115/291 (39%), Gaps = 19/291 (6%)

Query: 34  KESQQLYTEIAKQVCKITRTKPRW----EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLS 89
           K    ++T +   VC+I +T+       E  L+  +P     + L  R +  Q    +  
Sbjct: 107 KPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVPDVVTCNSLM-RGYCSQGK--IDK 163

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQ 146
           +R    L    G  PD+ S ++  +   +      AM+  D     G  PN  +    I+
Sbjct: 164 VRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIK 223

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------- 197
            LC++    +A   F K+   G+   I  +++ L G  K    D +  L+          
Sbjct: 224 ALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKP 283

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           DL+    +I   C   KV +  E+L +++ +GL P+   +  L+   C + +      L 
Sbjct: 284 DLVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLF 343

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
             M      P + +Y  ++ G  +        ++ +++ +RG+  D V  T
Sbjct: 344 RKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEMADRGFYADAVTRT 394


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 158/327 (48%), Gaps = 12/327 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +++  +L ++ +       A+  +D   S G  P+  +    I+ +C+ G+++ AF  
Sbjct: 226 PTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEM 285

Query: 161 FSKLKEMGVFGSIKTWN---SALLGCIKIDRTD-LVWKLYHD-----LIESGYLIQAFCN 211
              L+  G    + ++N    ALL   K +  + L+ K++ +     ++    LI   C 
Sbjct: 286 VRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 345

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGK+ E   LL+ + E GL P+  +++ LI+ FC +       E L TM++    PD   
Sbjct: 346 DGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVN 405

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  V+  LCK+ K  +A  +F  L E G  P++  Y T+   L   G    A  M  EM+
Sbjct: 406 YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMM 465

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P+E TYNSMI   CR   ++EA  L  +M    +  + VTYN ++ G C   R +
Sbjct: 466 SNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIE 525

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +A ++ E M   G   +  TY  LI+G
Sbjct: 526 DAINVLESMVGNGCRPNETTYTVLIEG 552



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 150/336 (44%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           FSPD V+ N++  SL       +A+  L+   S    P   +  + I+     G ++EA 
Sbjct: 189 FSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEAL 248

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
               ++   G+   + T+N+ + G  K    D  +++           D+I    L++A 
Sbjct: 249 KLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRAL 308

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            N GK  EG +L+ ++  +   P    ++ LI+  C          LL  M  +   PD 
Sbjct: 309 LNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 368

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           ++Y+ +I   C+  +   A      +   G +PD V Y TV+  LCK G    A +++ +
Sbjct: 369 YSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK 428

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +   G  PN  +YN+M        +   A  +  EM+  G     +TYN++I+ LC  G 
Sbjct: 429 LGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGM 488

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            DEA+ L  +M        V+TYN ++ G+CK  +I
Sbjct: 489 VDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRI 524



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 150/363 (41%), Gaps = 33/363 (9%)

Query: 67  SFNFNDPLFFREFLK--QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           S  F D    + F +  +  N + S+   + +    G++PD++ C  L       R    
Sbjct: 84  SLGFRDTQMLKIFHRSCRSGNYIESLHLLETM-VRKGYNPDVILCTKLIKGFFTLRNIPK 142

Query: 125 A---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           A   M+ L+  G  P+  +    I   C+   I++A     +++         T+N    
Sbjct: 143 AVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN---- 197

Query: 182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
                                  +I + C+ GK+    ++L Q+L D   P    +  LI
Sbjct: 198 ----------------------IMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILI 235

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
                +       +L+  M++R   PD FTY  +I G+CK      A+ +  +L+ +G  
Sbjct: 236 EATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSE 295

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD + Y  ++  L   G   +  K+  +M  +   PN  TY+ +I   CR   +EEA  L
Sbjct: 296 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 355

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            K M +KG      +Y+ LIA  C  GR D A    E M   G   D++ YNT++   CK
Sbjct: 356 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 415

Query: 422 EGK 424
            GK
Sbjct: 416 NGK 418



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 157/353 (44%), Gaps = 14/353 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSL 141
           N+  ++R  + L   +G  PD+ + N L +   +      A   LD   S  FSP+  + 
Sbjct: 139 NIPKAVRVMEILE-KFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + I  LC  G ++ A    ++L       ++ T+   +   +     D   KL  +++ 
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          +I+  C +G V   +E++R +   G  P+  ++N L+     +  +  
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEE 316

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +L+  M +    P+  TY  +I  LC+  K  EA  +   +KE+G  PD   Y  +I 
Sbjct: 317 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 376

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C+ G L  A +    MI  G LP+   YN+++   C+    ++A  +  ++ + G   
Sbjct: 377 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 436

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + +YNT+ + L   G    A H+  EM   GI  D ITYN++I   C+EG +
Sbjct: 437 NSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMV 489



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           RQ     L   +T   K+  R C   N+     LL TMV +   PD     ++I G    
Sbjct: 78  RQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL 137

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           R   +A RV   L++ G  PD   Y  +I+G CKM  + DA ++   M  K   P+  TY
Sbjct: 138 RNIPKAVRVMEILEKFGQ-PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 196

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N MI   C    L+ A ++  ++L      T +TY  LI    L G  DEA  L +EM  
Sbjct: 197 NIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLS 256

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           +G+  D+ TYNT+I+G CKEG +
Sbjct: 257 RGLKPDMFTYNTIIRGMCKEGMV 279



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/271 (28%), Positives = 128/271 (47%), Gaps = 37/271 (13%)

Query: 191 LVWKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +V K Y+ D+I    LI+ F     + +   ++ ++LE    P+  A+N LI+ FC+   
Sbjct: 115 MVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVM-EILEKFGQPDVFAYNALINGFCKMNR 173

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               + +L  M +++ +PD  TY  +I  LC   K   A +V N L      P  + YT 
Sbjct: 174 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTI 233

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----------IDNL---- 355
           +I      G + +A K+  EM+ +GL P+ +TYN++I G C+          + NL    
Sbjct: 234 LIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG 293

Query: 356 ---------------------EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
                                EE ++L  +M  +      VTY+ LI  LC  G+ +EA 
Sbjct: 294 SEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 353

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +L + M +KG+  D  +Y+ LI  +C+EG++
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 384



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 134/305 (43%), Gaps = 29/305 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S N+L  +L+    ++     M  + S    PN  +  + I  LC  G IEEA
Sbjct: 293 GSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 352

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 +KE G+     +++                           LI AFC +G++  
Sbjct: 353 MNLLKLMKEKGLTPDAYSYDP--------------------------LIAAFCREGRLDV 386

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E L  ++ DG +P+   +N +++  C+     +  E+   +     +P++ +Y  + +
Sbjct: 387 AIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 446

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L  S  ++ A  +  ++   G  PD + Y ++I  LC+ G + +A ++  +M      P
Sbjct: 447 ALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHP 506

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN ++ G+C+   +E+A  + + M+  G      TY  LI G+   G   EA  L 
Sbjct: 507 SVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELA 566

Query: 398 EEMAQ 402
            ++ +
Sbjct: 567 NDLVR 571


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 152/338 (44%), Gaps = 40/338 (11%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEA-------RAFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           +H    P   S N L  +LV A       RAFK A+        SP+  +  + I  LC+
Sbjct: 142 AHPRHRPSAFSVNRLLSALVAAERVDLAERAFKAAL----RRRVSPDLFTFNIVISGLCK 197

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC 210
           +G + +A      ++  G+  S+ T+N+                          +I  +C
Sbjct: 198 TGQLRKAGDVAKDIRAWGLAPSVVTYNT--------------------------IIDGYC 231

Query: 211 NDGKVSEGYE---LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             G+    Y    LL++++E G+ P    FN L++ +C+  N      +   M  +  A 
Sbjct: 232 KRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAA 291

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
              TY  ++ GLC   K  E  ++ +++K+ G VP+     +V++G CK G + DA    
Sbjct: 292 SVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWI 351

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  K + PN  TY  ++ GY R+D +++A  + + M  KG       YN LIAG   +
Sbjct: 352 DSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRN 411

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G       L +EM  KG+  D++TYN LI   C +G++
Sbjct: 412 GDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEV 449



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 65/199 (32%), Positives = 106/199 (53%), Gaps = 3/199 (1%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P   + N+L+S     +            + R  +PD FT+  VI+GLCK+ +  +A  V
Sbjct: 148 PSAFSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNIVISGLCKTGQLRKAGDV 207

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLG---DARKMWFEMIHKGLLPNEYTYNSMIHG 348
             D++  G  P  V Y T+I G CK G  G       +  EM+  G+ PNE T+N +++G
Sbjct: 208 AKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNG 267

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
           YC+  N   A R+ +EM  +G   + VTY+ L+ GLC  G+ +E   L +EM   G+  +
Sbjct: 268 YCKDSNTAAAVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPN 327

Query: 409 VITYNTLIQGYCKEGKIVN 427
           + T N+++ G+CK+G + +
Sbjct: 328 LATLNSVLNGFCKKGMMTD 346



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 159/366 (43%), Gaps = 69/366 (18%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-------TGFSPNPNSLELYIQCLCESG 152
           +G +P +V+ N + D   + R     M  +D+        G SPN  +  + +   C+  
Sbjct: 214 WGLAPSVVTYNTIIDGYCK-RGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDS 272

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND 212
               A   F ++K+ G+  S+ T+++            LVW L              C++
Sbjct: 273 NTAAAVRVFEEMKQQGIAASVVTYSA------------LVWGL--------------CSE 306

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           GKV EG +L+ ++ + GLVP     N +++ FC+K         + +M  +N  P+  TY
Sbjct: 307 GKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTY 366

Query: 273 EEVINGLCKSRKRLEAY---------------RVFN--------------------DLKE 297
             +++G  +  K  +A                R++N                    +++ 
Sbjct: 367 TILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRM 426

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           +G   D V Y  +I  LC  G +  A K+  EM+  GL P   TYN++I+GYC   N++ 
Sbjct: 427 KGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKS 486

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A  +   M         VTYN  I  LC  G+ +E   L  EM +KG+  + +TY+T+ +
Sbjct: 487 AYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKE 546

Query: 418 GYCKEG 423
           G  ++G
Sbjct: 547 GMMEKG 552



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/305 (26%), Positives = 137/305 (44%), Gaps = 14/305 (4%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G SP+ V+ NVL +   +    A A +V  + +   G + +  +    +  LC  G +EE
Sbjct: 253 GISPNEVTFNVLVNGYCKDSNTAAAVRV-FEEMKQQGIAASVVTYSALVWGLCSEGKVEE 311

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLV-W-------KLYHDLIESGYLIQ 207
                 ++K++G+  ++ T NS L G C K   TD   W        +  +++    L+ 
Sbjct: 312 GVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVD 371

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            +    K+ +   +   +   G+ P    +N LI+ F    ++  VS LL  M  +    
Sbjct: 372 GYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRA 431

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D  TY  +I  LC   +  +A ++ +++   G  P  + Y T+I+G C+ G +  A ++ 
Sbjct: 432 DIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIR 491

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M       N  TYN  I   CR+  +EE   L  EML+KG     VTY+T+  G+   
Sbjct: 492 TRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEK 551

Query: 388 GRTDE 392
           G T +
Sbjct: 552 GYTPD 556



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 100/236 (42%), Gaps = 12/236 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+L + N + +   +      A  ++DS       PN  +  + +        +++A
Sbjct: 323 GLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDA 382

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                 +   GV  + + +N  + G  +      V  L           D++    LI A
Sbjct: 383 LAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGA 442

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V +  +LL ++L  GL P +  +N +I+ +CEK N     E+   M    +  +
Sbjct: 443 LCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRAN 502

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             TY   I  LC+  K  E   + N++ E+G VP+ V Y T+  G+ + G+  D R
Sbjct: 503 VVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKGYTPDVR 558


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 155/331 (46%), Gaps = 26/331 (7%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +A+ +  + + S GF P+ ++    I  LC +  ++ AF  F ++K   V   + T+   
Sbjct: 463 KAYSIIREMM-SKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTIL 521

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           +    K+       K + +++  G          LI A+    K+S   EL   +L +G 
Sbjct: 522 IDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGC 581

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARN----------------RAPDNFTYEE 274
           +P    +  LI   C+     +  ++   M                    R P+ FTY  
Sbjct: 582 IPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGA 641

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++GLCK+ K  EA  + + +   G  P+ ++Y  +I G CK+G L +A+ ++ +M  +G
Sbjct: 642 LVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERG 701

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             PN YTY+S+I    +   L+ A ++   ML+       + Y  +I GLC  G+TDEAY
Sbjct: 702 YGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAY 761

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M +KG   +V+TY  +I G+ K GK+
Sbjct: 762 RLMSMMEEKGCHPNVVTYTAMIDGFGKAGKV 792



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/394 (25%), Positives = 162/394 (41%), Gaps = 66/394 (16%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           S  GF+ D  +       L +A  ++ A+  ++   F  +       I  LCE+ L EEA
Sbjct: 259 SDSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEA 318

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
               S+++      ++ T+   L GC++  +     ++   +I  G          LI A
Sbjct: 319 MDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHA 378

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-------------EKKNFG---- 251
           +C  G  S  Y+LL+++ + G  P    +N LI   C              +K +G    
Sbjct: 379 YCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLD 438

Query: 252 ------------------------RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
                                   +   ++  M+++   PD  TY +VI  LC + K   
Sbjct: 439 AHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDN 498

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+ +F ++K    VPD   YT +I   CK+G L  ARK + EM+  G  PN  TY ++IH
Sbjct: 499 AFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIH 558

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM------- 400
            Y +   +  A  L + ML +G     VTY  LI G C  G+ ++A  ++  M       
Sbjct: 559 AYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADIP 618

Query: 401 -------AQKGIFRD--VITYNTLIQGYCKEGKI 425
                     G  RD  + TY  L+ G CK  K+
Sbjct: 619 DVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKV 652



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 153/325 (47%), Gaps = 13/325 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + ++AR    A +  +   S G  PN  +    I   C+SG IE+A
Sbjct: 545 GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKA 604

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
              +++++       +  +        KID  ++      ++   G L+   C   KV E
Sbjct: 605 CQIYARMRGNADIPDVDMY-------FKIDDGNIRDP---NIFTYGALVDGLCKAHKVKE 654

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             +LL  +  +G  P +  ++ LI  FC+         +   M  R   P+ +TY  +I+
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L K ++   A +V + + E    P+ ++YT +I GLCK+G   +A ++   M  KG  P
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           N  TY +MI G+ +   +++   L ++M  KG     VTY  LI   C  G  D+A+ L 
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLL 834

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           +EM Q    + +  Y  +I+G+ +E
Sbjct: 835 DEMKQTYWPKHMAGYRKVIEGFNRE 859



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 148/351 (42%), Gaps = 28/351 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + +   L  A     A    + + S    P+  +  + I   C+ GL+++A
Sbjct: 475 GFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQA 534

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++   G   ++ T+ + +   +K  +     +L+  ++  G          LI  
Sbjct: 535 RKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDG 594

Query: 209 FCNDGKVSEGYELLRQV--------------LEDGLV--PENTAFNKLISRFCEKKNFGR 252
            C  G++ +  ++  ++              ++DG +  P    +  L+   C+      
Sbjct: 595 HCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKE 654

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +LL  M      P++  Y+ +I+G CK  K  EA  VF  + ERGY P+   Y+++I 
Sbjct: 655 ARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLID 714

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
            L K   L  A K+   M+     PN   Y  MI G C++   +EA RL   M +KG   
Sbjct: 715 RLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHP 774

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             VTY  +I G    G+ D+   L  +M  KG   + +TY  LI   C  G
Sbjct: 775 NVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAG 825



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/334 (25%), Positives = 147/334 (44%), Gaps = 26/334 (7%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++ +   L D L +A   K A D LD     G  PN    +  I   C+ G ++EA   
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F+K+ E G   ++ T++S +    K  R DL  K+   ++E+           +I   C 
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCK 753

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  E Y L+  + E G  P    +  +I  F +     +  EL+  M A+  AP+  T
Sbjct: 754 VGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVT 813

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-----LCKMGWLGDARKM 326
           Y  +IN  C +    +A+++ +++K+  +      Y  VI G     +  +G L      
Sbjct: 814 YRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLD----- 868

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-KGYGETTVT-YNTLIAGL 384
             E+     +P    Y  +I  +C+   LE A  LHK M     Y       Y++LI  L
Sbjct: 869 --EIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESL 926

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
            L  + D+A+ L+ +M ++G   ++  +  L++G
Sbjct: 927 SLASKVDKAFELYADMIKRGGIPELSIFFYLVKG 960



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 165/405 (40%), Gaps = 38/405 (9%)

Query: 58  EQTLLSDI-----PSFNFNDPLFFREFLKQQNNVL------------LSIRFFQWLHSHY 100
           +  L+SD+       F      F R+F ++ N  L            L ++FF W     
Sbjct: 97  DAVLISDVIRNTGDGFGHKTQKFLRQFREKLNETLVVDVLSLVKNPELGVKFFIWAGRQI 156

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP---NSLELYIQCLCESGLIEEA 157
           G+       + L + L      +V   FL              L + I+  C +GL   A
Sbjct: 157 GYGHTGPVYHALLEVLGCGGNDRVPEQFLREIRDEDKEILGKLLNVLIRKCCRNGLWNVA 216

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +LK++G   S  T+N+ +   ++ DR D  + ++ ++ +SG+          +  
Sbjct: 217 LEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHL 276

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+  E   L+ +   +    +   + ++IS  CE   F    + L  M + +  P+
Sbjct: 277 LCKAGRWREALALIEK---EEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPN 333

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++ G  + R+     R+ + +   G  P   ++ ++IH  C+ G    A K+  
Sbjct: 334 VVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLK 393

Query: 329 EMIHKGLLPNEYTYNSMIHGYC------RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           +M   G  P    YN +I G C       +D LE A++ + EMLD       V  + L  
Sbjct: 394 KMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLAR 453

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            LC  G+ ++AY +  EM  KG   D  TY+ +I   C   K+ N
Sbjct: 454 CLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDN 498



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 59/267 (22%), Positives = 105/267 (39%), Gaps = 47/267 (17%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G+ P++ + + L D L + +   +A+  L        +PN       I  LC+ G  
Sbjct: 698 SERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKT 757

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YL 205
           +EA+   S ++E G   ++ T+ + + G  K  + D   +L   +   G          L
Sbjct: 758 DEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVL 817

Query: 206 IQAFCNDG-------------------------KVSEGYE--------LLRQVLEDGLVP 232
           I   C  G                         KV EG+         LL ++ E+  VP
Sbjct: 818 INHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVP 877

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVA--RNRAPDNFTYEEVINGLCKSRKRLEAYR 290
              A+  LI  FC+        EL   M +     A D   Y  +I  L  + K  +A+ 
Sbjct: 878 IIPAYRILIDSFCKAGRLELALELHKXMSSCTSYSAADKDLYSSLIESLSLASKVDKAFE 937

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKM 317
           ++ D+ +RG +P+  ++  ++ GL ++
Sbjct: 938 LYADMIKRGGIPELSIFFYLVKGLIRI 964


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 140/289 (48%), Gaps = 9/289 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +   +E  ++    T    L   +K+    LVW  Y +++E GY
Sbjct: 79  ITAYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLRYFKLVWGFYEEILECGY 138

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+  FC DG +     +   + + GL P   ++N L++ +           
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFR 198

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L   M A    PD +TY  +INGL K     +   +F+++  +G VP++V +TT+I G C
Sbjct: 199 LKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHC 258

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K G +  A +++ +M+ + L P+  TYN++ +G C+  +L +A  L  EM  KG      
Sbjct: 259 KNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKGLKPDKF 318

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           TY TLI G C  G  D A+   + M Q+ I  D + Y  LI G C+EG+
Sbjct: 319 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGR 367


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 165/328 (50%), Gaps = 23/328 (7%)

Query: 112 LFDSLVEARAFKVAM--------DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +FDS++       AM        D +   G SPN  +    I  LC+ G +++A   F++
Sbjct: 431 IFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQ 490

Query: 164 L-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----DLIESGYLIQAFCNDGKVSE 217
           +  E+    +++ W  A          +LV+++       D++    L+   C +G+V E
Sbjct: 491 MINEVYGLCTVEKWEKA---------EELVFEMLDQGIRLDVVVFNTLMCDLCREGRVME 541

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              L+  +L  G+ P+  ++N L+   C        ++LL  MV+    P+ FTY  +++
Sbjct: 542 AQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLH 601

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK+R+  +AY +  ++   G  PD V Y T++HGL + G   +A++++  MI+     
Sbjct: 602 GYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQW 661

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + YTYN +++G C+ + ++EA ++ + +  KG     +T+N +I  L   G+ ++A  LF
Sbjct: 662 DMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLF 721

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++  G+  DV TY  + +   KEG +
Sbjct: 722 ATISAYGLVPDVETYCLIAENLIKEGSL 749



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 147/339 (43%), Gaps = 61/339 (17%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LFD +V   + KVA          P+  +  + I C C  G +E  F  F  + + G   
Sbjct: 179 LFDRMVRECSDKVA----------PDRCTYSILIGCFCRMGRLEHGFAVFGLILKTG--- 225

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE-LLRQVLEDGL 230
                                W++ H  I    L++  C+  ++ E    LL ++ E G 
Sbjct: 226 ---------------------WRVNH--IVFNQLLKGLCDAKRLDEATNILLWRMPEFGC 262

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMV---ARNRAPDNFTYEEVINGLCKSRKRLE 287
            P   ++N L+  FC +       ELLH M      +  PD  +Y  VING  +  +  +
Sbjct: 263 TPNVVSYNTLVKGFCNENRAEEALELLHVMADDQGLSCPPDVVSYNTVINGFFREGQVDK 322

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           AY +F  + +RG  PD V Y TVI GLCK   +  A+ ++ +M+ KG+ P+  TYN +IH
Sbjct: 323 AYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIH 382

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR------------------ 389
           GY      +E  RL +EM           Y  L+  LC +GR                  
Sbjct: 383 GYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIKP 442

Query: 390 ---TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               DEA  +F++M Q+G+  +V+ Y  LI   CK G++
Sbjct: 443 DAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRV 481



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 120/283 (42%), Gaps = 9/283 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           LC  G + EA      +  +GV   + ++N+ + G     RTD   KL   ++  G    
Sbjct: 533 LCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPN 592

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+  +C   ++ + Y LLR++L +G  P+   +N ++    +   F    EL  
Sbjct: 593 EFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYL 652

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+      D +TY  ++NGLCK+    EA+++F  L  +G     + +  +I  L K G
Sbjct: 653 NMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKGG 712

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              DA  ++  +   GL+P+  TY  +     +  +LEE   L   M + G    +   N
Sbjct: 713 KKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLN 772

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            L+      G    A     ++ +K    +  T + LI  Y +
Sbjct: 773 ALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSR 815



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 64/297 (21%), Positives = 121/297 (40%), Gaps = 13/297 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDS-LVEARAFKVA--MDFLDSTGFSP 136
           L ++  V+ + R  + L    G  PD++S N L D   +  R  + A  +D + S G  P
Sbjct: 533 LCREGRVMEAQRLIE-LMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKP 591

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  +    +   C++  I++A+    ++   G    + T+N+ L G  +  R     +LY
Sbjct: 592 NEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELY 651

Query: 197 HDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
            ++I S           ++   C +  V E +++ + +   GL      FN +I    + 
Sbjct: 652 LNMINSRTQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNIMIGALLKG 711

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
                  +L  T+ A    PD  TY  +   L K     E   +F+ ++E G  P++ M 
Sbjct: 712 GKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRML 771

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364
             ++      G +  A     ++  K       T + +I  Y R +  + AK L ++
Sbjct: 772 NALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGEYQQLAKSLPEK 828


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 176/399 (44%), Gaps = 75/399 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDF-LDSTGFSPNPNSL--ELYIQCLCESGL 153
           G SPD+V+ N    +L ++     A ++  D  +D     P PN++   L ++  C  G+
Sbjct: 253 GLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGM 312

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            EEA   F  +K      S++++N  +LG ++  +      + +++ E            
Sbjct: 313 FEEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNI 371

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF-------------- 250
           L+   C  G  S+   +L  + E G+ P+   ++ L+  +C +                 
Sbjct: 372 LVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVG 431

Query: 251 ------------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
                             GR SE   LL  M  R    DN T   +INGLCK+    +A 
Sbjct: 432 CFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAI 491

Query: 290 RVFNDLKERGY-----------------------VPDTVMYTTVIHGLCKMGWLGDARKM 326
            + + +  RG                        +PD++ Y T+I GLCK+G + +A+K 
Sbjct: 492 EIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKK 551

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EMI K L P+   +++ I+ YC+   L  A R+ KEM  KG  ++  TYN+LI GL  
Sbjct: 552 LLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGS 611

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  E Y L +EM ++GIF +V TYN +I    + GK+
Sbjct: 612 ENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKL 650



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 170/382 (44%), Gaps = 28/382 (7%)

Query: 64  DIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFS---PDLVSCNVLFDSLVEAR 120
           D P  +F + L FR  LK+       +    WL+     +   P   + N+L  +L E  
Sbjct: 114 DPPPISFYN-LLFRCSLKESR-----VDCVIWLYKDMAVARVKPQTYTFNLLISALCEMG 167

Query: 121 AFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
             + A +  D     G  PN  SL + ++  C +GL         +++  G   +   +N
Sbjct: 168 YLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYN 227

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLED 228
           + +       +T    KL   + E G           I A C  G++ E   + R +  D
Sbjct: 228 TVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQID 287

Query: 229 ---GLVPENTA-FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSR 283
              GL   NT  +N ++  FC +  F     +  +M  +N    +  +Y   + GL +S 
Sbjct: 288 EEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSM--KNSETLSLRSYNIWMLGLVRSG 345

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K LEA+ + N++ E+   P+   Y  ++HGLCK G   DAR +   M   G+ P+  TY+
Sbjct: 346 KLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYS 405

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           +++HGYCR   + EA  + +EM+  G      T N L+  L   GR  EA  L + M ++
Sbjct: 406 TLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNER 465

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           G   D +T NT+I G CK G +
Sbjct: 466 GYGLDNVTCNTMINGLCKAGNL 487



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 157/346 (45%), Gaps = 35/346 (10%)

Query: 89  SIRFFQWLHSHYGFSPDLVSC-NVLFD-SLVEARAFKVAMDFLDST--GFSPNPNSLELY 144
           +I  F+ L   +   P  +S  N+LF  SL E+R   V   + D       P   +  L 
Sbjct: 100 AISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMAVARVKPQTYTFNLL 159

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LCE G +E A   F K+ E G                K +   L           G 
Sbjct: 160 ISALCEMGYLENAREVFDKMSEKGC---------------KPNEFSL-----------GI 193

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++ +C  G  S G +LL ++   G +P   A+N +IS  C +       +L+  M    
Sbjct: 194 LVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVG 253

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK---ERGYV-PDTVMYTTVIHGLCKMGWL 320
            +PD  T+   I  LCKS + LEA R+F D++   E G   P+TV Y  ++ G C  G  
Sbjct: 254 LSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMF 313

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +AR ++  M +   L +  +YN  + G  R   L EA  +  EM +K       +YN L
Sbjct: 314 EEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNIL 372

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + GLC +G   +A  +   M + G+  D +TY+TL+ GYC+ GKI+
Sbjct: 373 VHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKIL 418



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 158/367 (43%), Gaps = 40/367 (10%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G  P+  S  +L      A      +D LD   S+G  PN  +    I  LC  G  
Sbjct: 180 SEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQT 239

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-------------IE 201
            EA     K++E+G+   I T+N  +    K  +     +++ D+             + 
Sbjct: 240 VEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVT 299

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +++ FC++G   E   +    +++       ++N  +              +L+ M 
Sbjct: 300 YNLMLEGFCSEGMFEEARAIF-DSMKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMA 358

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            +N  P+ ++Y  +++GLCK     +A  +   ++E G  PDTV Y+T++HG C+ G + 
Sbjct: 359 EKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKIL 418

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +  EMI  G  PN YT N ++H   +     EA+ L + M ++GYG   VT NT+I
Sbjct: 419 EANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMI 478

Query: 382 AGLCLHGRTDEAYHLFEEMAQKG-----------------------IFRDVITYNTLIQG 418
            GLC  G  D+A  +   M  +G                          D ITY T+I G
Sbjct: 479 NGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGG 538

Query: 419 YCKEGKI 425
            CK G++
Sbjct: 539 LCKVGRV 545



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 32/318 (10%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  S  + +  LC+ G+  +A      ++E GV     T+++ L G  +  +      +
Sbjct: 364 PNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYV 423

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             ++I+ G          L+ +   +G+ SE  +LL+ + E G   +N   N +I+  C+
Sbjct: 424 LREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCK 483

Query: 247 KKNFGRVSELLHTMVARNRA-----------------------PDNFTYEEVINGLCKSR 283
             N  +  E++  M  R  A                       PD+ TY  +I GLCK  
Sbjct: 484 AGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVG 543

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +  EA +   ++  +   PD++++ T I+  CK G L  A ++  EM  KG   +  TYN
Sbjct: 544 RVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYN 603

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           S+I G    + + E   L  EM ++G      TYN +I+ L   G+  +A  L +EM QK
Sbjct: 604 SLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQK 663

Query: 404 GIFRDVITYNTLIQGYCK 421
           GI  ++ T+  LI  + K
Sbjct: 664 GISPNIYTFRILIGAFFK 681



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 19/334 (5%)

Query: 101 GFSPDLVSCNVLFDSL-VEARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +CN+L  SL  E RA +    +  ++  G+  +  +    I  LC++G +++A
Sbjct: 431 GCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKA 490

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---WKLYHDLIESGYLIQAFCNDGK 214
               S    M   GS    N   LG   ID  D+     K   D I    +I   C  G+
Sbjct: 491 IEIVSG---MWTRGSASLGN---LGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGR 544

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V E  + L +++   L P++  F+  I  +C++        +L  M  +       TY  
Sbjct: 545 VDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNS 604

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I GL    +  E Y + +++KERG  P+   Y  +I  L + G L DA  +  EM+ KG
Sbjct: 605 LIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKG 664

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGET--TVTYNTLIAGLCLHGRTD 391
           + PN YT+  +I  + +  +   A+ L +  L   G+ E+  +  +N L+AG    G T 
Sbjct: 665 ISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAG----GETL 720

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  LFE    + +      Y  LI+  CK+GK+
Sbjct: 721 KAKELFEAALDRSLALKNFLYRDLIEKLCKDGKL 754



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 104/261 (39%), Gaps = 46/261 (17%)

Query: 104 PDLVSCNVLFDSLVE-ARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCA 160
           PD ++   +   L +  R  +     L+  G   +P+SL  + +I   C+ G +  AF  
Sbjct: 527 PDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRV 586

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++++ G   S++T+NS + G    ++   ++ L  ++ E G          +I     
Sbjct: 587 LKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSE 646

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG-------------------- 251
            GK+ +   LL ++L+ G+ P    F  LI  F +  +FG                    
Sbjct: 647 GGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLY 706

Query: 252 --------------RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
                         +  EL    + R+ A  NF Y ++I  LCK  K  +A  + + + +
Sbjct: 707 SFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMD 766

Query: 298 RGYVPDTVMYTTVIHGLCKMG 318
           + Y  D   +  VI  L K G
Sbjct: 767 KQYSFDPASFMPVIDELGKRG 787


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 153/338 (45%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+ N L            AM+ +D   S G SP+  S    +  LC    + E 
Sbjct: 346 GIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEI 405

Query: 158 FCAFSKLK-EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQ 207
                K++ +  +     T+NS +    K    D   ++           D +E   ++ 
Sbjct: 406 RELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVH 465

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A+C +GK+ +  EL+ ++   G  P+   +  ++  FC      +  +++  M   +  P
Sbjct: 466 AYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKP 525

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY   +NGLC++ K LEA ++ N  +E  + P+ + Y+ V+HGL + G L +A  + 
Sbjct: 526 NAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVV 585

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EMI KG  PN    N ++H  CR     EA +L KE ++KG     V + T+I G C  
Sbjct: 586 REMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQK 645

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + A  L ++M       D +TY  LI    K  +I
Sbjct: 646 DDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDRI 683



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 111/258 (43%), Gaps = 36/258 (13%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G+++ ++   G++ +  ++L  + + G+ P  +  N  I          +       MV 
Sbjct: 285 GFVMVSYSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVL 344

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
              AP+  TY  +I G C   +  +A  + + +  +G  PD V Y TV+  LC+   L +
Sbjct: 345 IGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNE 404

Query: 323 ARKMWFEM-IHKGLLPNEYTYNSMI----------------------------------- 346
            R++  +M     LLP+  TYNS+I                                   
Sbjct: 405 IRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIV 464

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           H YC+   +++AK L  EM  KG     VTY +++ G C  G+ D+A  + ++M +    
Sbjct: 465 HAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCK 524

Query: 407 RDVITYNTLIQGYCKEGK 424
            + +TY T + G C+ GK
Sbjct: 525 PNAVTYTTFLNGLCRNGK 542



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 142/332 (42%), Gaps = 14/332 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD V+ N L   L +      A++ L   +   F  +       +   C+ G I++A   
Sbjct: 420 PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKEL 479

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
            S++   G    + T+ S L G  +I + D   K+   +         +     +   C 
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GK  E  +++    E+   P    ++ ++     +       +++  M+ +   P+   
Sbjct: 540 NGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVE 599

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
              +++ LC+  K  EA ++  +   +G   + V +TTVIHG C+   L  A  +  +M 
Sbjct: 600 INLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMY 659

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
                P+  TY ++I    + D +EEA  L  +ML +G   + VTY ++I   C  GR +
Sbjct: 660 LCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVE 719

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +   L ++M  K  F+    YN +I+  CK G
Sbjct: 720 DLLKLLKKMLLKSRFQ--TAYNLVIEKLCKFG 749



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/224 (28%), Positives = 109/224 (48%), Gaps = 2/224 (0%)

Query: 200 IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
           I    ++     +GK++E  +++R+++  G  P     N L+   C        ++LL  
Sbjct: 563 ITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKE 622

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
            + +  A +   +  VI+G C+      A  + +D+      PDTV YT +I  L K   
Sbjct: 623 CMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDALAKTDR 682

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           + +A ++  +M+ +GL+P+  TY S+IH YCR   +E+  +L K+ML K   +T   YN 
Sbjct: 683 IEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQT--AYNL 740

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +I  LC  G  +EA  L  E+ +     D  T + L++ Y   G
Sbjct: 741 VIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVG 784



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 137/337 (40%), Gaps = 14/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   + D          A   +         PN  +   ++  LC +G   EA
Sbjct: 487 GCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEA 546

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               +  +E     +  T++  + G  +  + +    +  ++I  G+         L+ +
Sbjct: 547 RKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHS 606

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGK  E  +LL++ +  G       F  +I  FC+K +      LL  M   N+ PD
Sbjct: 607 LCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPD 666

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+ L K+ +  EA  +   +  +G VP  V Y +VIH  C+ G + D  K+  
Sbjct: 667 TVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLK 726

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M+ K     +  YN +I   C+   LEEA  L  E+L         T + L+      G
Sbjct: 727 KMLLKSRF--QTAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVG 784

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               AY +   M  + +  D+     + +    EGK+
Sbjct: 785 IPMSAYKVACRMFNRNLIPDLKLCEKVSKRLVVEGKL 821



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/160 (27%), Positives = 75/160 (46%), Gaps = 4/160 (2%)

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVMYTTVIHGLCKMGWLGDARK 325
           D+  Y  ++  L K++    A R+   +  R     P+   +  V +   + G L DA K
Sbjct: 245 DSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYS--RAGRLRDAMK 302

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +   M   G+ PN    N+ IH     + L++A R  + M+  G     VTYN LI G C
Sbjct: 303 VLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYC 362

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + D+A  L ++M  KG   D ++Y T++   C++ ++
Sbjct: 363 NVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRL 402



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 53/278 (19%), Positives = 96/278 (34%), Gaps = 45/278 (16%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           ++P+ ++ +V+   L        A D +      GF PNP  + L +  LC  G   EA 
Sbjct: 558 WTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREAN 617

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAF 209
               +    G   ++  + + + G  + D  +    L  D+         +    LI A 
Sbjct: 618 QLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKHPDTVTYTALIDAL 677

Query: 210 CNDGKVSEGYELLRQVLEDGLVPE---------------------------------NTA 236
               ++ E  EL  ++L  GLVP                                   TA
Sbjct: 678 AKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSRFQTA 737

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           +N +I + C+       + LL  ++      D  T   ++         + AY+V   + 
Sbjct: 738 YNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVGIPMSAYKVACRMF 797

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
            R  +PD  +   V   L   G L +A ++    + +G
Sbjct: 798 NRNLIPDLKLCEKVSKRLVVEGKLEEADRLVLRFVERG 835



 Score = 43.5 bits (101), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 51/121 (42%)

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
           Y  D+ +Y  ++  L K      A+++   M  + +      +  ++  Y R   L +A 
Sbjct: 242 YRHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAM 301

Query: 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           ++   M   G        NT I  L +     +A    E M   GI  +V+TYN LI+GY
Sbjct: 302 KVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGY 361

Query: 420 C 420
           C
Sbjct: 362 C 362


>gi|297793055|ref|XP_002864412.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310247|gb|EFH40671.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1245

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 158/335 (47%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L + L    +FK +   M  ++ +G++P   +    +   C+ G  + A   
Sbjct: 191 PDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAAIEL 250

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCN 211
              +   GV   + T+N  +    + +R+   + L  D+         +    L+  F N
Sbjct: 251 LDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNTLLNGFSN 310

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKV    +LL ++L  GL P +  FN LI     + NF    ++ H M A+       +
Sbjct: 311 EGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVS 370

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +++GLCK+ +   A   +  +K  G     + YT +I GLCK G+L +A  M  EM 
Sbjct: 371 YGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMS 430

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P+  TY+++I+G+CR+  L+ AK +   +   G     + Y+TLI   C  G   
Sbjct: 431 KDGIDPDIVTYSALINGFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           E   ++E M  +G   D  T+N L+   CK GK+ 
Sbjct: 491 ETIRIYEAMILEGNTPDHFTFNVLVTSLCKAGKVA 525



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 167/370 (45%), Gaps = 38/370 (10%)

Query: 88  LSIRFFQWLHSHYGFSPDLVS---CNVLFDSLVEARAFKVAMDFLDSTGF---------- 134
           L+++F +W+    G   D +    C +    LV AR +  A   L               
Sbjct: 52  LALKFLKWVVKQPGLDTDHIVQLFC-ITTHILVRARMYDPARHILKELSLMSGKSSFVFG 110

Query: 135 ---------SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLG 182
                    + NP+  ++ I+     G+I+++   F   + MG++G   S+ T N+ L  
Sbjct: 111 ALMATYRLCNSNPSVFDILIRVYLREGMIQDSLEIF---RLMGLYGFNPSVYTCNAILGS 167

Query: 183 CIKIDRTDLVW---------KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
            +K      VW         K+  D+     LI   C +G   +   L++++ + G  P 
Sbjct: 168 IVKSCEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPT 227

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N ++  +C+K  F    ELL  M  +    D  TY  +I+ LC+S +  + Y +  
Sbjct: 228 IVTYNTVLHWYCKKGRFKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLR 287

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+++R   P+ V Y T+++G    G +  AR++  EM+  GL PN  T+N++I G+    
Sbjct: 288 DMRKRMIHPNEVTYNTLLNGFSNEGKVLIARQLLNEMLTFGLSPNHVTFNALIDGHISEG 347

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           N +EA ++   M  KG   T V+Y  L+ GLC +   D A   +  M + G+    ITY 
Sbjct: 348 NFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYT 407

Query: 414 TLIQGYCKEG 423
            +I G CK G
Sbjct: 408 GMIDGLCKNG 417



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 12/339 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G SP+ V+ N L D  +    FK A+     +++ G      S  + +  LC++   + 
Sbjct: 327 FGLSPNHVTFNALIDGHISEGNFKEALKMFHMMEAKGLIGTEVSYGVLLDGLCKNAEFDL 386

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   + ++K  GV     T+   + G  K    D    + +++ + G          LI 
Sbjct: 387 ARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVMLNEMSKDGIDPDIVTYSALIN 446

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            FC  G++    E++ ++   GL P    ++ LI   C          +   M+     P
Sbjct: 447 GFCRVGRLKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKETIRIYEAMILEGNTP 506

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D+FT+  ++  LCK+ K  EA      +   G +P+ V +  +I+G    G    A  ++
Sbjct: 507 DHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKAFSVF 566

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM   G  P  +TY S++ G C+  +L  A++  K + +      TV  NTLI  +C  
Sbjct: 567 DEMTKVGHHPTFFTYGSLLKGLCKGGHLIAAEKFLKSLQNVPAAVDTVMCNTLITAMCKS 626

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           G  D+A  LF EM Q+ I  D  TY +LI G C++GK V
Sbjct: 627 GNLDKAVSLFGEMVQRSILPDSFTYTSLISGLCRKGKTV 665



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 146/344 (42%), Gaps = 12/344 (3%)

Query: 92   FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF---SPNPNSLELYIQCL 148
            +F+      G + D+V+ N + D        +   D L   G     PN  +  + +   
Sbjct: 705  YFRQQMDKLGLTRDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGY 764

Query: 149  CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
             +   +  +F  +  +   G+     T  S +LG  + +  ++  K+    I  G     
Sbjct: 765  SKRKHVSTSFMLYRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDR 824

Query: 205  -----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                 LI   C +G+++  ++++  +   G+  +    + ++S       F     +LH 
Sbjct: 825  HTFNMLISKCCANGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHE 884

Query: 260  MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
            M  +  +P++  Y  ++NGLC+      A+ V  ++      P  V  + ++  L K G 
Sbjct: 885  MSKQGISPESRKYIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGK 944

Query: 320  LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
              +A  +   M+   L+P   ++ +++H +C+  N+ EA  L   M + G     V+YN 
Sbjct: 945  ADEASLLLRSMLKMKLVPTIASFTTLMHLFCKNGNVTEALELRVVMSNCGLKLDLVSYNV 1004

Query: 380  LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            LI GLC  G    A+ LFEEM + G   +V TY  L+ G   +G
Sbjct: 1005 LITGLCAKGDMAIAFELFEEMKRDGFLANVTTYKALVGGILSQG 1048



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 146/364 (40%), Gaps = 65/364 (17%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD  + NVL  SL +A     A +F+    S G  PN  S +  I     SG   +A
Sbjct: 503 GNTPDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNAVSFDCLINGYGSSGEGLKA 562

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
           F  F ++ ++G   +  T+                          G L++  C  G +  
Sbjct: 563 FSVFDEMTKVGHHPTFFTY--------------------------GSLLKGLCKGGHLIA 596

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             + L+ +       +    N LI+  C+  N  +   L   MV R+  PD+FTY  +I+
Sbjct: 597 AEKFLKSLQNVPAAVDTVMCNTLITAMCKSGNLDKAVSLFGEMVQRSILPDSFTYTSLIS 656

Query: 278 GLCKSRKRLEAYRVFNDLKERG-YVPDTVMYT---------------------------- 308
           GLC+  K + A     + + RG  VP+ VMYT                            
Sbjct: 657 GLCRKGKTVIAILFAKEAEARGNLVPNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLT 716

Query: 309 -------TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
                   +I G  +MG +     + FEM ++   PN  TYN ++HGY +  ++  +  L
Sbjct: 717 RDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFML 776

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           ++ M+  G     +T  ++I G+C     +    + +    +G+  D  T+N LI   C 
Sbjct: 777 YRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCA 836

Query: 422 EGKI 425
            G+I
Sbjct: 837 NGEI 840



 Score = 87.8 bits (216), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 88/192 (45%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           + F+ LI  +  +       E+   M      P  +T   ++  + KS + +  +    +
Sbjct: 124 SVFDILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSIVKSCEDVSVWSFLKE 183

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           + +R   PD   +  +I+ LC  G    +  +  +M   G  P   TYN+++H YC+   
Sbjct: 184 MLKRKICPDVATFNILINVLCAEGSFKKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGR 243

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
            + A  L   M  KG      TYN LI  LC   R+ + Y L  +M ++ I  + +TYNT
Sbjct: 244 FKAAIELLDHMNLKGVNADVCTYNMLIHDLCRSNRSAKGYLLLRDMRKRMIHPNEVTYNT 303

Query: 415 LIQGYCKEGKIV 426
           L+ G+  EGK++
Sbjct: 304 LLNGFSNEGKVL 315



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/324 (20%), Positives = 139/324 (42%), Gaps = 20/324 (6%)

Query: 111 VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170
           +LF    EAR   V           PN      ++  + ++G  +  F    ++ ++G+ 
Sbjct: 668 ILFAKEAEARGNLV-----------PNKVMYTCFVDGMFKAGQWKAGFYFRQQMDKLGLT 716

Query: 171 GSIKTWNSALLG---CIKIDRT-DLVWKLYH-----DLIESGYLIQAFCNDGKVSEGYEL 221
             + T N+ + G     KI++T DL++++ +     +L     L+  +     VS  + L
Sbjct: 717 RDVVTTNAMIDGYSRMGKIEKTHDLLFEMGNQNQGPNLTTYNILLHGYSKRKHVSTSFML 776

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
            R ++  G++P+      +I   CE        ++L   + R    D  T+  +I+  C 
Sbjct: 777 YRSMILSGILPDKLTCYSIILGICESNMLEIGLKILKAFICRGVEVDRHTFNMLISKCCA 836

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
           + +   A+ + N +   G   D      ++  L +     ++R +  EM  +G+ P    
Sbjct: 837 NGEINWAFDMVNVMTSLGISLDKNTCDAIVSVLNRNHRFQESRMVLHEMSKQGISPESRK 896

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           Y  +++G CR+ +++ A  + +EM+        V  + ++  L   G+ DEA  L   M 
Sbjct: 897 YIGLLNGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADEASLLLRSML 956

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
           +  +   + ++ TL+  +CK G +
Sbjct: 957 KMKLVPTIASFTTLMHLFCKNGNV 980


>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
 gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
          Length = 628

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 153/310 (49%), Gaps = 13/310 (4%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
           D +  +G  P+  +   +I  LC++G +++      ++   G+   + T+ S + G  K 
Sbjct: 176 DEMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKA 235

Query: 187 DRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLR--QVLEDGLVPENT 235
           +R D  ++++  ++E G          ++       ++    E+L   Q ++ G V E  
Sbjct: 236 NRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVY 295

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
             N  I   C    F     +L  M+     P+  +Y  VI+GLCKS    +A+++   +
Sbjct: 296 THNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKM 355

Query: 296 KERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL-LPNEYTYNSMIHGYCRID 353
            + G   PD + + T+I G CK G L  A ++  EM  K + +P+  TYN++I G  +  
Sbjct: 356 LDSGCCKPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFG 415

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +L++AK L +EM   G     VTY  LI G   HG  +EA  LF+EM+ KG F D+ITYN
Sbjct: 416 SLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYN 475

Query: 414 TLIQGYCKEG 423
           T++  + K G
Sbjct: 476 TVLSAFSKAG 485



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 171/413 (41%), Gaps = 88/413 (21%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+   +V+   L D L ++     A   L      G +PN  +    I  LC++    +A
Sbjct: 5   GYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDA 64

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G    + T+NS + G    +R D    +  +L+ +G+         L+  
Sbjct: 65  IQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYSTLVIW 124

Query: 209 FCNDGKVSEGYELLR-------------------------------------QVLEDGLV 231
            C   ++ +   L+R                                     +++E G +
Sbjct: 125 NCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMIESGRI 184

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P+   +N  IS  C+     +  E+L  M      PD  T+  +I+GLCK+ +  +A++V
Sbjct: 185 PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQV 244

Query: 292 FNDLKERGYVPDTVMYTTV-------------------------------------IHGL 314
           F  + ERG VPD++ Y+ +                                     I  L
Sbjct: 245 FKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGAL 304

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           C+ G    A+ +   MI  G LPN  +YN +I G C+  N+++A +L ++MLD G  +  
Sbjct: 305 CRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPD 364

Query: 375 VT-YNTLIAGLCLHGRTDEAYHLFEEMAQKGI-FRDVITYNTLIQGYCKEGKI 425
           V  +NTLI+G C  GR  +A+ L  EM  K I   DV+TYNTLI G  K G +
Sbjct: 365 VIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSL 417



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 160/339 (47%), Gaps = 18/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N     L +A      ++ L   D  G  P+  +    I  LC++  I++A
Sbjct: 182 GRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDA 241

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL--IESGYL---------I 206
           F  F  + E G      T++  L    + +R D V ++   +  +++G +         I
Sbjct: 242 FQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFI 301

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
            A C  GK      +L  ++E G +P   ++N +I   C+  N     +L   M+     
Sbjct: 302 GALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCC 361

Query: 267 -PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY-VPDTVMYTTVIHGLCKMGWLGDAR 324
            PD   +  +I+G CK+ +  +A+++  ++K +   VPD V Y T+I G  K G L  A+
Sbjct: 362 KPDVIFFNTLISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAK 421

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +  EM   G  PN  TY ++I+GY +    EEA+ L  EM  KG     +TYNT+++  
Sbjct: 422 LLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAF 481

Query: 385 CLHGRTDEAYHLFEEMAQKGIF--RDVITYNTLIQGYCK 421
              G   +A  +++++  K  +   D ITY  LI GYC+
Sbjct: 482 SKAGMMSKAEGVYQQLKNKTSYCSPDAITYRILIDGYCR 520



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 159/347 (45%), Gaps = 25/347 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY-----IQCLCESGLIE 155
           G  PD ++ +++ D+L  A       + L+          +E+Y     I  LC SG   
Sbjct: 252 GCVPDSLTYSIMLDNLSRANRLDTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFP 311

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YL 205
            A      + E G   ++ ++N  + G  K    D  WKL   +++SG           L
Sbjct: 312 LAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTL 371

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           I  FC  G++S+ ++LL ++    + VP+   +N LI    +  +  +   LL  M A  
Sbjct: 372 ISGFCKAGRLSQAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVG 431

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+  TY  +ING  K     EA  +F+++  +G  PD + Y TV+    K G +  A 
Sbjct: 432 CKPNVVTYAALINGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAE 491

Query: 325 KMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
            ++ ++ +K     P+  TY  +I GYCR ++ E+   L +EM  +G+   + TYN LIA
Sbjct: 492 GVYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIA 551

Query: 383 GLCLHGRTDE----AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L     T+E    A  ++++M  +        +N+L++ + + G +
Sbjct: 552 KL---AETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDV 595



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 55/239 (23%), Positives = 99/239 (41%), Gaps = 32/239 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D   +  + K A   +  + + G  PN  +    I    + G+ EEA   
Sbjct: 399 PDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAALINGYAKHGMYEEAESL 458

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           F ++   G F  I T+N+ L                           AF   G +S+   
Sbjct: 459 FDEMSAKGCFPDIITYNTVL--------------------------SAFSKAGMMSKAEG 492

Query: 221 LLRQVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
           + +Q+        P+   +  LI  +C  ++  +   LL  M AR  + D++TY  +I  
Sbjct: 493 VYQQLKNKTSYCSPDAITYRILIDGYCRAEDTEQGLTLLQEMTARGWSCDSYTYNVLIAK 552

Query: 279 LCKSRK-RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           L ++ +   +A  V+  + ++  VP   ++ +++    + G +  AR M  EM  KG L
Sbjct: 553 LAETEEVPSKALAVYQQMLDQDCVPSASIFNSLVRLFLRTGDVNSARSMVQEMNEKGHL 611



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 32/57 (56%)

Query: 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           M   GY  + VTY TLI GLC  G  D A  L ++MA  G   +V+TY  LI G CK
Sbjct: 1   MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCK 57


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 154/332 (46%), Gaps = 16/332 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P     N +  SLV  + +   +      +S G +P+  +L + + C C    I  AF  
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 161 FSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHD-LIESGY---------LIQAF 209
            + + + G   +  T N+ + G C + +    ++  +HD ++  G+         LI   
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALY--FHDQVVAQGFQLNQVSYRTLINGL 178

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G+      LLR++    + P+   +N +I   C+ K  G   +L   M+ +  +P+ 
Sbjct: 179 CKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNV 238

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
            TY  ++ G C      EA+ + N++K +   PD   + T+I  L K G +  A+ +   
Sbjct: 239 VTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAV 298

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+   + P+  TYNS+I GY  ++ ++ AK +   M   G      TY T+I GLC    
Sbjct: 299 MMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKM 358

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            DEA  LFEEM  K +  D++TY +LI G CK
Sbjct: 359 VDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCK 390



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/375 (26%), Positives = 173/375 (46%), Gaps = 18/375 (4%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR----A 121
           P+F+FN   +    L    +    I  F+   S+ G +PDL + N+L +          A
Sbjct: 62  PTFHFN---YILSSLVNNKHYPTVISLFKKFESN-GATPDLCTLNILMNCFCHLTHITFA 117

Query: 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           F V  + L   G+ PN  +L   I+ LC  G I++A     ++   G   +  ++ + + 
Sbjct: 118 FSVLANILKR-GYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLIN 176

Query: 182 GCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232
           G  K   T  V +L           D++    +I + C +  + +  +L  +++  G+ P
Sbjct: 177 GLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISP 236

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +N L+  FC   +      LL+ M  +N  PD  T+  +I+ L K  K   A  V 
Sbjct: 237 NVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVL 296

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
             + +    PD V Y ++I G   +  + +A+ +++ M   G+ PN  TY +MI G C+ 
Sbjct: 297 AVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKE 356

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             ++EA  L +EM  K      VTY +LI GLC +   + A  L ++M ++GI  DV +Y
Sbjct: 357 KMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSY 416

Query: 413 NTLIQGYCKEGKIVN 427
             L+   CK G++ N
Sbjct: 417 TILLDALCKGGRLEN 431



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 96/333 (28%), Positives = 150/333 (45%), Gaps = 12/333 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ P+ ++ N L   L      K A+ F D   + GF  N  S    I  LC++G  +  
Sbjct: 128 GYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCKTGETKAV 187

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                KL+   V   +  +N+ +    K         LY ++I  G          L+  
Sbjct: 188 ARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYG 247

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G + E + LL ++    + P+   FN LI    ++        +L  M+     PD
Sbjct: 248 FCIMGHLKEAFSLLNEMKLKNINPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKPD 307

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G     K   A  VF  + + G  P+   YTT+I GLCK   + +A  ++ 
Sbjct: 308 VVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFE 367

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM +K ++P+  TY S+I G C+  +LE A  L K+M ++G      +Y  L+  LC  G
Sbjct: 368 EMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGG 427

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           R + A   F+ +  KG   +V TYN +I G CK
Sbjct: 428 RLENAKEFFQRLLVKGYHLNVQTYNVMINGLCK 460



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 154/357 (43%), Gaps = 35/357 (9%)

Query: 104 PDLVSCNVLFDS---LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D    L + +  K     +  +G +PN  +    I  LC+  +++EA   
Sbjct: 306 PDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTPNVRTYTTMIDGLCKEKMVDEAMSL 365

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F ++K   +   I T+ S + G  K    +    L   + E G          L+ A C 
Sbjct: 366 FEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCK 425

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++    E  +++L  G       +N +I+  C+   FG   +L   M  +   PD  T
Sbjct: 426 GGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAIT 485

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYV-----------------------PDTVMYT 308
           ++ +I  L +  +  +A ++  ++  RG                         PD V Y 
Sbjct: 486 FKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYG 545

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T++ G   +  L  A+ +++ M   G+ PN   Y  MI G C+   ++EA  L +EM  K
Sbjct: 546 TLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHK 605

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                 VTY +LI  LC +   + A  L +EM + GI  DV +Y  L+ G CK G++
Sbjct: 606 NMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRL 662



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 145/329 (44%), Gaps = 30/329 (9%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQC 147
           R  + L  H    PD+V  N +  SL + +    A D        G SPN  +    +  
Sbjct: 189 RLLRKLEGH-SVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYG 247

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ 207
            C  G ++EAF   +++K   +   + T+N+                          LI 
Sbjct: 248 FCIMGHLKEAFSLLNEMKLKNINPDVCTFNT--------------------------LID 281

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A   +GK+     +L  +++  + P+   +N LI  +           + ++M      P
Sbjct: 282 ALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGVTP 341

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I+GLCK +   EA  +F ++K +  +PD V YT++I GLCK   L  A  + 
Sbjct: 342 NVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIALC 401

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +M  +G+ P+ Y+Y  ++   C+   LE AK   + +L KGY     TYN +I GLC  
Sbjct: 402 KKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKA 461

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
               EA  L  +M  KG   D IT+ T+I
Sbjct: 462 DLFGEAMDLKSKMEGKGCMPDAITFKTII 490



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 108/441 (24%), Positives = 177/441 (40%), Gaps = 53/441 (12%)

Query: 21  NPNTQLRNLSIET--KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFN-FNDPLFFR 77
           NP+    N  I+   KE +    +I   V      KP        D+ ++N   D  FF 
Sbjct: 270 NPDVCTFNTLIDALGKEGKMKAAKIVLAVMMKACIKP--------DVVTYNSLIDGYFFL 321

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS-- 135
             +K    V  S+       +  G +P++ +   + D L + +    AM   +   +   
Sbjct: 322 NKVKNAKYVFYSM-------AQSGVTPNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNM 374

Query: 136 -PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            P+  +    I  LC++  +E A     K+KE G+   + ++   L    K  R +   +
Sbjct: 375 IPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKE 434

Query: 195 LYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
            +  L+  GY         +I   C      E  +L  ++   G +P+   F  +I    
Sbjct: 435 FFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALF 494

Query: 246 EKKNFGRVSELLHTMVARNR-----------------------APDNFTYEEVINGLCKS 282
           EK    +  ++L  M+AR                          PD  TY  +++G    
Sbjct: 495 EKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLV 554

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
            +   A  VF  + + G  P+   YT +I GLCK   + +A  ++ EM HK + PN  TY
Sbjct: 555 NELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTY 614

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
            S+I   C+  +LE A  L KEM + G      +Y  L+ GLC  GR + A  +F+ +  
Sbjct: 615 TSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLV 674

Query: 403 KGIFRDVITYNTLIQGYCKEG 423
           KG   +V  Y  +I   CK G
Sbjct: 675 KGYHLNVQVYTAMINELCKAG 695



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 86/319 (26%), Positives = 147/319 (46%), Gaps = 6/319 (1%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ S  +L D+L +    + A +F   L   G+  N  +  + I  LC++ L  EA
Sbjct: 408 GIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEA 467

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               SK++  G      T+ + +    + D  D   K+  ++I  G L +A     ++ E
Sbjct: 468 MDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILREMIARG-LQEA--RKVRLKE 524

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +L  + +  + P+   +  L+  +           + ++M      P+   Y  +I+
Sbjct: 525 AKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMID 584

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           GLCK +   EA  +F ++K +   P+ V YT++I  LCK   L  A  +  EM   G+ P
Sbjct: 585 GLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQP 644

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + Y+Y  ++ G C+   LE AK + + +L KGY      Y  +I  LC  G  DEA  L 
Sbjct: 645 DVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQ 704

Query: 398 EEMAQKGIFRDVITYNTLI 416
            +M  KG   D +T++ +I
Sbjct: 705 XKMEDKGCMPDAVTFDIII 723



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 93/194 (47%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FN ++S     K++  V  L     +    PD  T   ++N  C       A+ V
Sbjct: 61  PPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTHITFAFSV 120

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
             ++ +RGY P+ +   T+I GLC  G +  A     +++ +G   N+ +Y ++I+G C+
Sbjct: 121 LANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRTLINGLCK 180

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               +   RL +++         V YNT+I  LC +    +A  L+ EM  KGI  +V+T
Sbjct: 181 TGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVT 240

Query: 412 YNTLIQGYCKEGKI 425
           YN L+ G+C  G +
Sbjct: 241 YNALVYGFCIMGHL 254



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 74/162 (45%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M+     P  F +  +++ L  ++       +F   +  G  PD      +++  C +  
Sbjct: 54  MLLMRPPPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILMNCFCHLTH 113

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           +  A  +   ++ +G  PN  T N++I G C    +++A   H +++ +G+    V+Y T
Sbjct: 114 ITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQLNQVSYRT 173

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           LI GLC  G T     L  ++    +  DV+ YNT+I   CK
Sbjct: 174 LINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIIHSLCK 215


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 167/347 (48%), Gaps = 17/347 (4%)

Query: 94  QWLHSH-----YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYI 145
           + LH H      GF  + VS   L + + +    + A+  L   D     PN       I
Sbjct: 147 KALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTII 206

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYHDLIES-- 202
             LC+  L+ EA+  FS++   G+   + T+++ + G CI+    + +  L   ++++  
Sbjct: 207 DALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTIN 266

Query: 203 ------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   L+ A C +GKV E   +L  +L+  + P+   ++ L+  +       +   +
Sbjct: 267 PNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHV 326

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
            + M      PD  TY  +ING CK++   EA  +F ++ ++  VP  V Y+++I GLCK
Sbjct: 327 FNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCK 386

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G +     +  EM  +G   +  TY+S+I G C+  +L+ A  L  +M D+       T
Sbjct: 387 SGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +  L+ GLC  GR  +A  +F+++  KG   +V TYN +I G+CK+G
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQG 493



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 153/337 (45%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G+ PD V+ N L   L      K A+ F D   + GF  N  S    I  +C+ G    A
Sbjct: 124 GYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGA 183

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQA 208
                K+       +++ +++ +    K       + L+          D++    LI  
Sbjct: 184 IKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYG 243

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +GK+ E   LL +++   + P    +N L+   C++        +L  M+     PD
Sbjct: 244 FCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPD 303

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +++G     +  +A  VFN +   G  PD   YT +I+G CK   + +A  ++ 
Sbjct: 304 VITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVDEALNLFK 363

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  K ++P   TY+S+I G C+   +     L  EM D+G     +TY++LI GLC +G
Sbjct: 364 EMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNG 423

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             D A  LF +M  + I  ++ T+  L+ G CK G++
Sbjct: 424 HLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRL 460



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 15/278 (5%)

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGY 204
           +++A   F+++  M     I  +N  L    K+        L H         DLI    
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH---TMV 261
           LI  FC+ G+++ G+ +L ++L+ G  P+    N LI   C K   G+V + LH    ++
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLK---GQVKKALHFHDKLL 156

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           A+    +  +Y  +ING+CK      A ++   +  R   P+  MY+T+I  LCK   + 
Sbjct: 157 AQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVS 216

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  ++ EM  KG+  +  TY+++I+G+C    L+EA  L  EM+ K       TYN L+
Sbjct: 217 EAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILV 276

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
             LC  G+  EA  +   M +  +  DVITY+TL+ GY
Sbjct: 277 DALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGY 314



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 150/318 (47%), Gaps = 12/318 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G S D+V+ + L          K A+  L+       +PN  +  + +  LC+ G ++EA
Sbjct: 229 GISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEA 288

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               + + +  V   + T+++ + G   +        +++ +   G          LI  
Sbjct: 289 KSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILING 348

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +  V E   L +++ +  +VP    ++ LI   C+      V +L+  M  R +  D
Sbjct: 349 FCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMRDRGQPAD 408

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+GLCK+     A  +FN +K++   P+   +T ++ GLCK G L DA++++ 
Sbjct: 409 VITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQ 468

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +++ KG   N YTYN MI+G+C+   LEEA  +  +M D G      T+ T+I  L    
Sbjct: 469 DLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETIIIALFKKD 528

Query: 389 RTDEAYHLFEEMAQKGIF 406
             D+A  L  +M  +G+ 
Sbjct: 529 ENDKAEKLLRQMIARGLL 546



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 65/194 (33%), Positives = 102/194 (52%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P    FNK++  F + K++     L H +  +   PD  T   +IN  C   +    + V
Sbjct: 57  PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSV 116

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              + +RGY PDTV   T+I GLC  G +  A     +++ +G   N+ +Y ++I+G C+
Sbjct: 117 LAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCK 176

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           I +   A +L +++  +        Y+T+I  LC +    EAY LF EM  KGI  DV+T
Sbjct: 177 IGDTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVT 236

Query: 412 YNTLIQGYCKEGKI 425
           Y+TLI G+C EGK+
Sbjct: 237 YSTLIYGFCIEGKL 250



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 110/227 (48%)

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
           +I+   ++ +F      S    L  ++   G+ P+    N LI+ FC          +L 
Sbjct: 59  IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILINCFCHMGQITFGFSVLA 118

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            ++ R   PD  T   +I GLC   +  +A    + L  +G+  + V Y T+I+G+CK+G
Sbjct: 119 KILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIG 178

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
               A K+  ++  +   PN   Y+++I   C+   + EA  L  EM  KG     VTY+
Sbjct: 179 DTRGAIKLLRKIDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYS 238

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TLI G C+ G+  EA  L  EM  K I  +V TYN L+   CKEGK+
Sbjct: 239 TLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKV 285



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 40/137 (29%), Positives = 69/137 (50%)

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           +A   FN +    + P  + +  ++    KM     A  +   +  KG+ P+  T N +I
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           + +C +  +     +  ++L +GY   TVT NTLI GLCL G+  +A H  +++  +G  
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQ 161

Query: 407 RDVITYNTLIQGYCKEG 423
            + ++Y TLI G CK G
Sbjct: 162 LNQVSYATLINGVCKIG 178



 Score = 44.7 bits (104), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 25/104 (24%), Positives = 48/104 (46%)

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           DA   +  M+     P    +N ++  + ++ +   A  L   +  KG     +T N LI
Sbjct: 42  DAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNILI 101

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              C  G+    + +  ++ ++G   D +T NTLI+G C +G++
Sbjct: 102 NCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQV 145


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 107/399 (26%), Positives = 176/399 (44%), Gaps = 75/399 (18%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDF-LDSTGFSPNPNSL--ELYIQCLCESGL 153
           G SPD+V+ N    +L ++     A ++  D  +D     P PN++   L ++  C  G+
Sbjct: 253 GLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGM 312

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------- 204
            EEA   F  +K      S++++N  +LG ++  +      + +++ E            
Sbjct: 313 FEEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNI 371

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF-------------- 250
           L+   C  G  S+   +L  + E G+ P+   ++ L+  +C +                 
Sbjct: 372 LVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVG 431

Query: 251 ------------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
                             GR SE   LL  M  R    DN T   +INGLCK+    +A 
Sbjct: 432 CFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAI 491

Query: 290 RVFNDLKERGY-----------------------VPDTVMYTTVIHGLCKMGWLGDARKM 326
            + + +  RG                        +PD++ Y T+I GLCK+G + +A+K 
Sbjct: 492 EIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKK 551

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
             EMI K L P+   +++ I+ YC+   L  A R+ KEM  KG  ++  TYN+LI GL  
Sbjct: 552 LLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGS 611

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +  E Y L +EM ++GIF +V TYN +I    + GK+
Sbjct: 612 ENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKL 650



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 170/382 (44%), Gaps = 28/382 (7%)

Query: 64  DIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFS---PDLVSCNVLFDSLVEAR 120
           D P  +F + L FR  LK+       +    WL+     +   P   + N+L  +L E  
Sbjct: 114 DPPPISFYN-LLFRCSLKESR-----VDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMG 167

Query: 121 AFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
             + A +  D     G  PN  SL + ++  C +GL         +++  G   +   +N
Sbjct: 168 YLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYN 227

Query: 178 SALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLED 228
           + +       +T    KL   + E G           I A C  G++ E   + R +  D
Sbjct: 228 TVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQID 287

Query: 229 ---GLVPENTA-FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSR 283
              GL   NT  +N ++  FC +  F     +  +M  +N    +  +Y   + GL +S 
Sbjct: 288 EEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSM--KNSETLSLRSYNIWMLGLVRSG 345

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K LEA+ + N++ E+   P+   Y  ++HGLCK G   DAR +   M   G+ P+  TY+
Sbjct: 346 KLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYS 405

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           +++HGYCR   + EA  + +EM+  G      T N L+  L   GR  EA  L + M ++
Sbjct: 406 TLLHGYCRRGKILEANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNER 465

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           G   D +T NT+I G CK G +
Sbjct: 466 GYGLDNVTCNTMINGLCKAGNL 487



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/346 (30%), Positives = 157/346 (45%), Gaps = 35/346 (10%)

Query: 89  SIRFFQWLHSHYGFSPDLVSC-NVLFD-SLVEARAFKVAMDFLD--STGFSPNPNSLELY 144
           +I  F+ L   +   P  +S  N+LF  SL E+R   V   + D       P   +  L 
Sbjct: 100 AISQFRSLRDRFPHDPPPISFYNLLFRCSLKESRVDCVIWLYKDMAVAKVKPQTYTFNLL 159

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I  LCE G +E A   F K+ E G                K +   L           G 
Sbjct: 160 ISALCEMGYLENAREVFDKMSEKGC---------------KPNEFSL-----------GI 193

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++ +C  G  S G +LL ++   G +P   A+N +IS  C +       +L+  M    
Sbjct: 194 LVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVG 253

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK---ERGYV-PDTVMYTTVIHGLCKMGWL 320
            +PD  T+   I  LCKS + LEA R+F D++   E G   P+TV Y  ++ G C  G  
Sbjct: 254 LSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMF 313

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +AR ++  M +   L +  +YN  + G  R   L EA  +  EM +K       +YN L
Sbjct: 314 EEARAIFDSMKNSETL-SLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNIL 372

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + GLC +G   +A  +   M + G+  D +TY+TL+ GYC+ GKI+
Sbjct: 373 VHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKIL 418



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 158/367 (43%), Gaps = 40/367 (10%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G  P+  S  +L      A      +D LD   S+G  PN  +    I  LC  G  
Sbjct: 180 SEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLCGEGQT 239

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL-------------IE 201
            EA     K++E+G+   I T+N  +    K  +     +++ D+             + 
Sbjct: 240 VEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDMQIDEEMGLPKPNTVT 299

Query: 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              +++ FC++G   E   +    +++       ++N  +              +L+ M 
Sbjct: 300 YNLMLEGFCSEGMFEEARAIFDS-MKNSETLSLRSYNIWMLGLVRSGKLLEAHLILNEMA 358

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            +N  P+ ++Y  +++GLCK     +A  +   ++E G  PDTV Y+T++HG C+ G + 
Sbjct: 359 EKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKIL 418

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +  EMI  G  PN YT N ++H   +     EA+ L + M ++GYG   VT NT+I
Sbjct: 419 EANYVLREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMI 478

Query: 382 AGLCLHGRTDEAYHLFEEMAQKG-----------------------IFRDVITYNTLIQG 418
            GLC  G  D+A  +   M  +G                          D ITY T+I G
Sbjct: 479 NGLCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGG 538

Query: 419 YCKEGKI 425
            CK G++
Sbjct: 539 LCKVGRV 545



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/318 (26%), Positives = 144/318 (45%), Gaps = 32/318 (10%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  S  + +  LC+ G+  +A      ++E GV     T+++ L G  +  +      +
Sbjct: 364 PNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYV 423

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             ++I+ G          L+ +   +G+ SE  +LL+ + E G   +N   N +I+  C+
Sbjct: 424 LREMIQVGCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCK 483

Query: 247 KKNFGRVSELLHTMVARNRA-----------------------PDNFTYEEVINGLCKSR 283
             N  +  E++  M  R  A                       PD+ TY  +I GLCK  
Sbjct: 484 AGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVG 543

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +  EA +   ++  +   PD++++ T I+  CK G L  A ++  EM  KG   +  TYN
Sbjct: 544 RVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYN 603

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           S+I G    + + E   L  EM ++G      TYN +I+ L   G+  +A  L +EM QK
Sbjct: 604 SLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQK 663

Query: 404 GIFRDVITYNTLIQGYCK 421
           GI  ++ T+  LI  + K
Sbjct: 664 GISPNIYTFRILIGAFFK 681



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 153/334 (45%), Gaps = 19/334 (5%)

Query: 101 GFSPDLVSCNVLFDSL-VEARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ +CN+L  SL  E RA +    +  ++  G+  +  +    I  LC++G +++A
Sbjct: 431 GCFPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKA 490

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV---WKLYHDLIESGYLIQAFCNDGK 214
               S    M   GS    N   LG   ID  D+     K   D I    +I   C  G+
Sbjct: 491 IEIVSG---MWTRGSASLGN---LGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGR 544

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V E  + L +++   L P++  F+  I  +C++        +L  M  +       TY  
Sbjct: 545 VDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNS 604

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I GL    +  E Y + +++KERG  P+   Y  +I  L + G L DA  +  EM+ KG
Sbjct: 605 LIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKG 664

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGET--TVTYNTLIAGLCLHGRTD 391
           + PN YT+  +I  + +  +   A+ L +  L   G+ E+  +  +N L+AG    G T 
Sbjct: 665 ISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLYSFMFNELLAG----GETL 720

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  LFE    + +      Y  LI+  CK+GK+
Sbjct: 721 KAKELFEAALDRSLALKNFLYRDLIEKLCKDGKL 754



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/261 (21%), Positives = 104/261 (39%), Gaps = 46/261 (17%)

Query: 104 PDLVSCNVLFDSLVE-ARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAFCA 160
           PD ++   +   L +  R  +     L+  G   +P+SL  + +I   C+ G +  AF  
Sbjct: 527 PDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRV 586

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             ++++ G   S++T+NS + G    ++   ++ L  ++ E G          +I     
Sbjct: 587 LKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSE 646

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG-------------------- 251
            GK+ +   LL ++L+ G+ P    F  LI  F +  +FG                    
Sbjct: 647 GGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSLCGHKESLY 706

Query: 252 --------------RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
                         +  EL    + R+ A  NF Y ++I  LCK  K  +A  + + + +
Sbjct: 707 SFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKLDDASFILHKMMD 766

Query: 298 RGYVPDTVMYTTVIHGLCKMG 318
           + Y  D   +  VI  L K G
Sbjct: 767 KQYSFDPASFMPVIDELGKRG 787


>gi|357137687|ref|XP_003570431.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Brachypodium distachyon]
          Length = 938

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 161/337 (47%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V  N L   L  A     A D +D+    G  PN  +  ++I   C    +++A
Sbjct: 204 GVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYCRRNAVDDA 263

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
           F  + ++   GV   + T ++ + G  K  R    + L+ ++ + G          LI  
Sbjct: 264 FSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHVTYCMLIDT 323

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                + +E   LL +V+  G+V +   +  L+   C++       ++    ++ N  P+
Sbjct: 324 LAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKIDEAKDMFRHALSDNHTPN 383

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+ LCK+     A +V ++++E+   P+ V ++++I+GL K GW+G A     
Sbjct: 384 GVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATDYMR 443

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  +G+ PN  TY ++I G  +    E A  ++ EML +G        ++L+ GL  +G
Sbjct: 444 EMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNG 503

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + ++A  LF EM ++G+  D + Y TLI G  K G +
Sbjct: 504 KIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNL 540



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 159/372 (42%), Gaps = 47/372 (12%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P+ V+  VL D+L +A     A   L   +    SPN  +    I  L + G + +A  
Sbjct: 381 TPNGVTYTVLIDALCKAGNVDGAEQVLSEMEEKSISPNVVTFSSIINGLVKRGWVGKATD 440

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCND------- 212
              ++KE G+  ++ T+ + + G  K    +    +YH+++  G  +  F  D       
Sbjct: 441 YMREMKERGIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLK 500

Query: 213 --GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             GK+ +   L R++ E G++ ++  +  LI    +  N     ++   +  +N  PD  
Sbjct: 501 KNGKIEKAEALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAV 560

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            Y   IN LC   K  EA     +++  G  PD V Y T+I    + G    A K+   M
Sbjct: 561 VYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGM 620

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT-------------- 376
               + PN  TY+++I G      +E+AK L  EM   G+  T++T              
Sbjct: 621 KRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRS 680

Query: 377 ---------------------YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
                                YNTL+  LC +G T +A  + EEM+ +GI  D IT+N L
Sbjct: 681 DLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNAL 740

Query: 416 IQGYCKEGKIVN 427
           I G+ K G + N
Sbjct: 741 ILGHFKSGHLDN 752



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/331 (26%), Positives = 153/331 (46%), Gaps = 14/331 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD V  NV  + L      K A  FL+   STG  P+  +    I      G   +A   
Sbjct: 557 PDAVVYNVFINCLCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKL 616

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
            + +K   +  ++ T+++ ++G  +    +    L +++  SG+         ++QA C+
Sbjct: 617 LNGMKRSSIKPNLITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQA-CS 675

Query: 212 DGKVSE-GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
            G+ S+   E+   ++  GL  + T +N L+   C      +   +L  M  R  APD  
Sbjct: 676 QGRRSDLILEIHEWMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTI 735

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           T+  +I G  KS     A+  ++ +   G  P+   + T++ GL   G +G++  +  EM
Sbjct: 736 TFNALILGHFKSGHLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEM 795

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
             +G+ P+  TY+ ++ GY +  N  EA RL+ EM+ KG+     TYN LI+     G  
Sbjct: 796 KKRGIEPSNLTYDILVTGYGKQSNKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMM 855

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            +A  LF EM  +G+     TY+ L+ G+ K
Sbjct: 856 SQAKELFNEMQNRGVLPTSCTYDILVSGWSK 886



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 160/345 (46%), Gaps = 15/345 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
           F + + S  G  PD V+ N +  +       A+A K+ ++ +  +   PN  +    I  
Sbjct: 581 FLEEMQST-GLKPDQVTYNTMIAAQSREGKTAKALKL-LNGMKRSSIKPNLITYSTLIVG 638

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--- 204
           L E+G +E+A    +++   G   +  T    L  C +  R+DL+ +++  ++ +G    
Sbjct: 639 LFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHEWMMNAGLCAD 698

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L++  C +G   +   +L ++   G+ P+   FN LI    +  +         
Sbjct: 699 ITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSGHLDNAFSTYD 758

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+    +P+  T+  ++ GL  + +  E+  V N++K+RG  P  + Y  ++ G  K  
Sbjct: 759 QMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYDILVTGYGKQS 818

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A +++ EM+ KG LP   TYN++I  + ++  + +AK L  EM ++G   T+ TY+
Sbjct: 819 NKVEAVRLYCEMVGKGFLPKVSTYNALISDFSKVGMMSQAKELFNEMQNRGVLPTSCTYD 878

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            L++G        E     ++M +KG      T +++ + + K G
Sbjct: 879 ILVSGWSKLRNGTEVRKFLKDMKEKGFSPSKGTLSSISRAFSKPG 923



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 2/230 (0%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP--ENTAFNKLISRFCEKKNFGRVSE 255
           D +    ++   C DG+V     L   ++  G +   +   +N L+  +C+  +      
Sbjct: 136 DAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLDVVGWNSLVDGYCKVGDMETAFA 195

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           +   M A+    D   Y  ++ GLC++ +   A  + + +K  G  P+ V YT  I   C
Sbjct: 196 VAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVDTMKRDGVEPNVVTYTMFIVEYC 255

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           +   + DA  ++ EM+ KG+LP+  T ++++ G C+     EA  L +EM   G     V
Sbjct: 256 RRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDGRFSEAYALFREMEKIGAAPNHV 315

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           TY  LI  L    R +E+  L  E+  +G+  D+I Y  L+   CKEGKI
Sbjct: 316 TYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYTALMDWLCKEGKI 365



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 154/369 (41%), Gaps = 47/369 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V+   + D   +    + A+D    +   G   N   ++  +  L ++G IE+A
Sbjct: 449 GIDPNVVTYGTVIDGSFKCLGQEAALDVYHEMLCEGVEVNKFIVDSLVNGLKKNGKIEKA 508

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
              F ++ E GV      + + + G  K       +K+  +L E   L         I  
Sbjct: 509 EALFREMNERGVLLDHVNYTTLIDGLFKTGNLPAAFKVGQELTEKNLLPDAVVYNVFINC 568

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK  E    L ++   GL P+   +N +I+    +    +  +LL+ M   +  P+
Sbjct: 569 LCMLGKSKEAESFLEEMQSTGLKPDQVTYNTMIAAQSREGKTAKALKLLNGMKRSSIKPN 628

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-------------------------- 302
             TY  +I GL ++    +A  + N++   G+ P                          
Sbjct: 629 LITYSTLIVGLFEAGAVEKAKYLLNEMSSSGFSPTSLTHRRVLQACSQGRRSDLILEIHE 688

Query: 303 ---------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
                    D  +Y T++  LC  G    A  +  EM  +G+ P+  T+N++I G+ +  
Sbjct: 689 WMMNAGLCADITVYNTLVRVLCYNGMTRKAMVVLEEMSGRGIAPDTITFNALILGHFKSG 748

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           +L+ A   + +ML  G      T+NTL+ GL   GR  E+  +  EM ++GI    +TY+
Sbjct: 749 HLDNAFSTYDQMLYHGISPNVATFNTLLGGLESAGRIGESDMVLNEMKKRGIEPSNLTYD 808

Query: 414 TLIQGYCKE 422
            L+ GY K+
Sbjct: 809 ILVTGYGKQ 817



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/287 (23%), Positives = 121/287 (42%), Gaps = 13/287 (4%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------ 203
           + GL  EA  A  ++ + GV     T N+ L+G  +  R D    L   ++  G      
Sbjct: 116 QGGLAPEALLA--EMCKRGVPFDAVTVNTVLVGLCRDGRVDRAAALAEVMVRGGGIGGLD 173

Query: 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 L+  +C  G +   + +  ++   G+  +   +N L++  C         +++ 
Sbjct: 174 VVGWNSLVDGYCKVGDMETAFAVAERMKAQGVGVDVVGYNSLVAGLCRAGEVDAARDMVD 233

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
           TM      P+  TY   I   C+     +A+ ++ ++  +G +PD V  + ++ GLCK G
Sbjct: 234 TMKRDGVEPNVVTYTMFIVEYCRRNAVDDAFSLYEEMVRKGVLPDVVTLSALVGGLCKDG 293

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A  ++ EM   G  PN  TY  +I    +     E+  L  E++ +G     + Y 
Sbjct: 294 RFSEAYALFREMEKIGAAPNHVTYCMLIDTLAKAQRGNESLSLLGEVVSRGVVMDLIMYT 353

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L+  LC  G+ DEA  +F          + +TY  LI   CK G +
Sbjct: 354 ALMDWLCKEGKIDEAKDMFRHALSDNHTPNGVTYTVLIDALCKAGNV 400


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/348 (25%), Positives = 166/348 (47%), Gaps = 25/348 (7%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +P +     +  SLV+   +  A+     ++  G + N  +L + I C  + G    +F 
Sbjct: 57  TPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQNPLSFS 116

Query: 160 AFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWKLYH--------------------- 197
            F+ + + G   ++ T  + + G C+K+    L+  L                       
Sbjct: 117 VFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVDGKLVQP 176

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           +++    +I + C    V+E ++L  +++ +G+ P+   ++ LIS F          +L 
Sbjct: 177 NVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLF 236

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
           + M+  N  PD +T+  +++G CK  K  E   VF  + ++G  P+ V Y +++ G C +
Sbjct: 237 NKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLV 296

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A  ++  M   G+ P+  +YN MI+G+C+I  ++EA  L K+M  K      VTY
Sbjct: 297 KQVNKANSIFNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTY 356

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +LI GLC  G+   A  L +EM  +G+  D+ITY++++   CK  ++
Sbjct: 357 TSLIDGLCKSGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQV 404



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 153/330 (46%), Gaps = 20/330 (6%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           VS   L + L +    + A+  L   D     PN       I  +C+  L+ EAF  +S+
Sbjct: 144 VSYGTLINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSE 203

Query: 164 LKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKLY-----HDLIESGYLIQAFCNDGK 214
           +   G+   + T+++ + G   +    D  DL  K+       D+     L+  FC DGK
Sbjct: 204 MVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGK 263

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           + EG  +   +++ G+ P    +  L+  +C  K   + + + +TM      PD  +Y  
Sbjct: 264 MKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNI 323

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +ING CK +K  EA  +F  +  +  +P+ V YT++I GLCK G +  A K+  EM  +G
Sbjct: 324 MINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRG 383

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD--------KGYGETTVTYNTLIAGLCL 386
           + P+  TY+S++   C+   +++A  L  ++ D        KGY      Y  +I G C+
Sbjct: 384 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCV 443

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            G  +EA  L  +M   G   D  TY  +I
Sbjct: 444 KGLFNEALALLSKMEDNGRIPDAKTYEIII 473



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 171/357 (47%), Gaps = 35/357 (9%)

Query: 101 GFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE------ 150
           G + +LV+ N+L +   +      +F V  + L   G+ PN  +L   I+ LC       
Sbjct: 90  GIASNLVTLNILINCFSQLGQNPLSFSVFANILKK-GYDPNVITLTTLIKGLCLKVSYGT 148

Query: 151 --SGL--IEEAFCAFSKLKEMG---VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
             +GL  + +A  A   L+ +    V  ++  +N+ +    K+   +  + LY +++  G
Sbjct: 149 LINGLCKVGQARAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEG 208

Query: 204 Y---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
                     LI  F   GK+ +  +L  +++ + + P+   FN L+  FC+        
Sbjct: 209 ISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEGK 268

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
            +   M+ +   P+  TY  +++G C  ++  +A  +FN + + G  PDT  Y  +I+G 
Sbjct: 269 TVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMINGF 328

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
           CK+  + +A  ++ +M  K ++PN  TY S+I G C+   +  A +L  EM D+G     
Sbjct: 329 CKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPDI 388

Query: 375 VTYNTLIAGLCLHGRTDEAYHL--------FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +TY++++  LC + + D+A  L        FE++  KG   DV  Y  +IQG+C +G
Sbjct: 389 ITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKG 445



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 127/289 (43%), Gaps = 20/289 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD+V+ + L          K A+D  +        P+  +  + +   C+ G ++E 
Sbjct: 208 GISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEG 267

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F+ + + G+  ++ T+ S + G   + + +    +++ + + G          +I  
Sbjct: 268 KTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGGVNPDTQSYNIMING 327

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC   KV E   L +++    ++P    +  LI   C+        +L+  M  R   PD
Sbjct: 328 FCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCKSGKISYALKLVDEMHDRGVPPD 387

Query: 269 NFTYEEVINGLCKSRKRLEAY--------RVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             TY  +++ LCK+ +  +A         +VF DL  +GY  D   YT +I G C  G  
Sbjct: 388 IITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLDVYAYTVMIQGFCVKGLF 447

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            +A  +  +M   G +P+  TY  +I    + D  + A++L +EM+ +G
Sbjct: 448 NEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLREMIARG 496



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 103/253 (40%), Gaps = 20/253 (7%)

Query: 104 PDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L D   +    +  K     +   G  PN  +    +   C    + +A   
Sbjct: 246 PDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSI 305

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F+ + + GV    +++N  + G  KI + D    L+          +++    LI   C 
Sbjct: 306 FNTMAQGGVNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKNIIPNVVTYTSLIDGLCK 365

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL--------HTMVAR 263
            GK+S   +L+ ++ + G+ P+   ++ ++   C+     +   LL          +  +
Sbjct: 366 SGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVK 425

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
               D + Y  +I G C      EA  + + +++ G +PD   Y  +I  L K      A
Sbjct: 426 GYNLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMA 485

Query: 324 RKMWFEMIHKGLL 336
            K+  EMI +GLL
Sbjct: 486 EKLLREMIARGLL 498



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 16/185 (8%)

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
           + LLH    +N  P  F + +++  L K      A  +   ++ +G   + V    +I+ 
Sbjct: 48  NRLLH---QKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINC 104

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM-------------IHGYCRIDNLEEAKR 360
             ++G    +  ++  ++ KG  PN  T  ++             I+G C++     A +
Sbjct: 105 FSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQ 164

Query: 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
           L + +  K      V YNT+I  +C     +EA+ L+ EM  +GI  DV+TY+ LI G+ 
Sbjct: 165 LLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFF 224

Query: 421 KEGKI 425
             GK+
Sbjct: 225 IVGKL 229



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 14/146 (9%)

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           L ++   P    +  ++  L K+     A  +  +M  KG+  N  T N +I+ + ++  
Sbjct: 51  LHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIASNLVTLNILINCFSQLGQ 110

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH-------------GRTDEAYHLFEEMA 401
              +  +   +L KGY    +T  TLI GLCL              G+   A  L   + 
Sbjct: 111 NPLSFSVFANILKKGYDPNVITLTTLIKGLCLKVSYGTLINGLCKVGQARAALQLLRRVD 170

Query: 402 QKGIFRDVITYNTLIQGYCKEGKIVN 427
            K +  +V+ YNT+I   CK  K+VN
Sbjct: 171 GKLVQPNVVMYNTIIDSMCKV-KLVN 195



 Score = 45.8 bits (107), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 12/128 (9%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-----------TGFSPN 137
           +++    +H   G  PD+++ + + D+L +      A+  L              G++ +
Sbjct: 372 ALKLVDEMHDR-GVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGYNLD 430

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +  + IQ  C  GL  EA    SK+++ G     KT+   +L   K D  D+  KL  
Sbjct: 431 VYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEKLLR 490

Query: 198 DLIESGYL 205
           ++I  G L
Sbjct: 491 EMIARGLL 498


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/377 (24%), Positives = 169/377 (44%), Gaps = 49/377 (12%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAM----DFLDSTGFSPNPNSLELYIQCLCESGL 153
           S  G SP + +C++L ++L       VA     +  D    +P+ ++    I+ LC +G 
Sbjct: 167 SARGASPSIKTCSILVEALGCGGQLDVARKVFGEMRDGKTVAPDVHTYTAMIKALCRAGE 226

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GY 204
           I+ AF   ++L+  G+  ++ T+N  +    K  R +  ++L   ++E          G 
Sbjct: 227 IDAAFAMLAELRRSGIQPTVVTYNVLMDALCKSGRVEEAFRLKGRMVEGRVRPSIVTFGI 286

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI       +  E   +L+++   G+ P    +N++I   C K +     +L   MV++ 
Sbjct: 287 LISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKLFDEMVSKG 346

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV----------------------- 301
                 TY  +   LCK  +   A ++ +++   G +                       
Sbjct: 347 IKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRGTGRLDLV 406

Query: 302 -------------PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                        P+  + T  I  LCK G   +A ++WF+++ KGL  N  T N++IHG
Sbjct: 407 LRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVATSNALIHG 466

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+ +N++EA ++ K M++ G     +TYN +I G C   + DEA  L ++M ++G   D
Sbjct: 467 LCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPD 526

Query: 409 VITYNTLIQGYCKEGKI 425
           + T+N  +  YC  GK+
Sbjct: 527 LFTFNIFLHTYCNLGKV 543



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G   N  +    I  LC+   ++EA      +   GV     T+N  + GC K  + D  
Sbjct: 452 GLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEA 511

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L  D+I+ G+          +  +CN GKV E   LL Q+  +GL P+   +  +I  
Sbjct: 512 IQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDG 571

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           +C+ K+  + +E L  ++     P+   Y  +I G  ++    +A  + + +K  G  P 
Sbjct: 572 YCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPT 631

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V Y ++++ +C  G + + + ++ + I K +      Y  +I G+C+I  ++EA    K
Sbjct: 632 PVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKIGKIDEAVMYFK 691

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           EM  +G     +TY TL+      G  +EA  LF+EM   GI  D ++YNTLI G+C+
Sbjct: 692 EMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSYNTLISGFCE 749



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 139/309 (44%), Gaps = 10/309 (3%)

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK- 185
           D + S G      +  L  + LC+ G +E A     ++   G+      +NS +   ++ 
Sbjct: 340 DEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLRG 399

Query: 186 IDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
             R DLV +L  +++              IQ  C  GK  E  E+  QVL  GL      
Sbjct: 400 TGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVNVAT 459

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
            N LI   C+  N    +++L  MV      D  TY  +I G CK+ K  EA ++ +D+ 
Sbjct: 460 SNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRDDMI 519

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
           +RG+ PD   +   +H  C +G + +   +  +M  +GL P+  TY ++I GYC+  ++ 
Sbjct: 520 KRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIIDGYCKAKDMH 579

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           +A     E++  G     V YN LI G   +G   +A  + + M   GI    +TYN+L+
Sbjct: 580 KANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQPTPVTYNSLM 639

Query: 417 QGYCKEGKI 425
              C  G +
Sbjct: 640 YWMCHAGLV 648



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 147/339 (43%), Gaps = 38/339 (11%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           F+P  V+   + DS   A A  +    L+S    P P SL               A  AF
Sbjct: 121 FNPLSVAAAAIADSHCTATADLLVRACLNS----PAPGSLS-------------RAADAF 163

Query: 162 SKLKEMGVFGSIKTWNSAL--LGCIKIDRTDLVWKLYHDLIES----------GYLIQAF 209
            +L   G   SIKT +  +  LGC    + D+  K++ ++ +             +I+A 
Sbjct: 164 LELSARGASPSIKTCSILVEALGCG--GQLDVARKVFGEMRDGKTVAPDVHTYTAMIKAL 221

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNRA 266
           C  G++   + +L ++   G+ P    +N L+   C+    GRV E   L   MV     
Sbjct: 222 CRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDALCKS---GRVEEAFRLKGRMVEGRVR 278

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   T+  +I+GL + ++  E   V  +++  G  P+ V+Y  +I   C+ G   +A K+
Sbjct: 279 PSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNEVIYNEMIGWHCRKGHCSEALKL 338

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA-GLC 385
           + EM+ KG+     TYN +    C+   +E A+++  EML  G       +N+++A  L 
Sbjct: 339 FDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDEMLLAGMMVHCSLFNSVVAWHLR 398

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             GR D    L  EM  + +  +       IQ  CK GK
Sbjct: 399 GTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGK 437


>gi|224137250|ref|XP_002327079.1| predicted protein [Populus trichocarpa]
 gi|222835394|gb|EEE73829.1| predicted protein [Populus trichocarpa]
          Length = 795

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 175/374 (46%), Gaps = 48/374 (12%)

Query: 100 YGFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           YG  P L SCN L  +LV   E+ +  +  D +      P+  +  + +   C++G +E 
Sbjct: 25  YGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTCAIMVNAYCKAGKVER 84

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A     +++++G   +  ++NS + G + +   +    +   + E G          LI+
Sbjct: 85  AVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIK 144

Query: 208 AFCNDGKVSEGYELLRQV-LEDGLVPENTAFNKLISRFCE-------------------K 247
            +C   KV E  ++LR++  EDG+V +  A+  LI  +C+                   K
Sbjct: 145 GYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLK 204

Query: 248 KNF-------------GRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
            N              G+V E   LL  M   +  PD+++Y  +++G C+     +A+ V
Sbjct: 205 MNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNV 264

Query: 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
            + +  +G  P  V Y T++ GLC+ G   DA ++W  M+ +G+ PNE  Y +++ G  +
Sbjct: 265 CDQMLRKGIEPTVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFK 324

Query: 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           + +   A  L  ++L +G  ++   +NT+I GLC  G  D A   F+ M + G   D IT
Sbjct: 325 MGDFSRALTLWDDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGIT 384

Query: 412 YNTLIQGYCKEGKI 425
           Y TL  GYCK G +
Sbjct: 385 YRTLSDGYCKVGNV 398



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 173/375 (46%), Gaps = 53/375 (14%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +  + + N + + L    E    K     ++  G  P+  +        C+ G +EEA
Sbjct: 342 GINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKVGNVEEA 401

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCI---KIDR-TDLVWK-----LYHDLIESGYLIQA 208
           F    K+++  +F SI+ +NS ++G     KI +  DL+ +     L  +++  G LI  
Sbjct: 402 FKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAG 461

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMV---- 261
           +C+ G++ + +    +++  G  P     +K++S        GR+ E   LL  MV    
Sbjct: 462 WCDQGRLDKAFSAYFEMIGKGFAPNVIICSKIVSSL---YRLGRIDEANMLLQKMVDFDL 518

Query: 262 -------------------------------ARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
                                           +   P+N  Y   + GLCKS K  +A R
Sbjct: 519 VLDHRCLEDFQNADIRKLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARR 578

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350
            F  L    + PD   Y T+IHG    G++ +A  +  EM++KGL+PN  TYN++++G C
Sbjct: 579 FFLGLSHGSFTPDNFTYCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLC 638

Query: 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410
           +   L+ A+RL  ++  KG     VTYN LI G C  G   EA  L  +M ++GI   +I
Sbjct: 639 KSGYLDRARRLFDKLHLKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSII 698

Query: 411 TYNTLIQGYCKEGKI 425
           TY++LI G+CK+  +
Sbjct: 699 TYSSLINGFCKQSDV 713



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +   N L   L  ++     +D L   D+ G SPN  +    I   C+ G +++AF A
Sbjct: 415 PSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTYGALIAGWCDQGRLDKAFSA 474

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC------NDGK 214
           + ++   G   ++   +  +    ++ R D    L   +++   ++   C       D +
Sbjct: 475 YFEMIGKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIR 534

Query: 215 VSEGYELLRQVLEDGL---VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             + +++   + E  +   +P N  +N  ++  C+             +   +  PDNFT
Sbjct: 535 KLDCWKIADTLDESAIKFSLPNNVVYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFT 594

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G   +    EA+ + +++  +G VP+   Y  +++GLCK G+L  AR+++ ++ 
Sbjct: 595 YCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLH 654

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL+PN  TYN +I GYC+  +  EA  L  +ML +G   + +TY++LI G C     +
Sbjct: 655 LKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVE 714

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  L  EM    + + + T++ L++G  + G +
Sbjct: 715 EAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDV 748



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 165/373 (44%), Gaps = 48/373 (12%)

Query: 101 GFSPDLVSCNVLFD---SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF  + VS N L D   SL +    K  + F+   G   N  +L L I+  C+   +EEA
Sbjct: 96  GFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSEKGVMRNKVTLTLLIKGYCKQCKVEEA 155

Query: 158 FCAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                ++ KE GV      + + + G  K+ +     ++  ++++ G          LI 
Sbjct: 156 EKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKVGLKMNLFVCNSLIN 215

Query: 208 AFCNDGKVSEGYELLR-----------------------------------QVLEDGLVP 232
            +C +G+V EG  LL                                    Q+L  G+ P
Sbjct: 216 GYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDGLSSKAFNVCDQMLRKGIEP 275

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
               +N L+   C   ++     L H M+ R   P+   Y  +++GL K      A  ++
Sbjct: 276 TVVTYNTLLKGLCRFGDYKDALRLWHLMLQRGVTPNEVGYCTLLDGLFKMGDFSRALTLW 335

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +D+  RG       + T+I+GLCKMG +  A++ +  M   G  P+  TY ++  GYC++
Sbjct: 336 DDILARGINKSIYAFNTMINGLCKMGEMDGAKETFKRMEELGCKPDGITYRTLSDGYCKV 395

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
            N+EEA ++ ++M  +    +   YN+LI GL    +  +   L  EM  +G+  +V+TY
Sbjct: 396 GNVEEAFKIKEKMEKEEIFPSIEMYNSLIVGLFTSKKISKLIDLLAEMDTRGLSPNVVTY 455

Query: 413 NTLIQGYCKEGKI 425
             LI G+C +G++
Sbjct: 456 GALIAGWCDQGRL 468



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/295 (24%), Positives = 125/295 (42%), Gaps = 53/295 (17%)

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK-------------IDRT 189
           + ++   E G+++ A   F  + + G   S+++ NS L   +K             + R 
Sbjct: 1   MILKVYAEKGMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRL 60

Query: 190 DLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           D+V     D+     ++ A+C  GKV    E +R++ + G      ++N L+        
Sbjct: 61  DIV----PDVFTCAIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLV-------- 108

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
                             D +     I G         A  V   + E+G + + V  T 
Sbjct: 109 ------------------DGYVSLGDIEG---------AKGVLKFMSEKGVMRNKVTLTL 141

Query: 310 VIHGLCKMGWLGDARKMWFEM-IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           +I G CK   + +A K+  EM    G++ +EY Y ++I GYC++  + +A R+  EML  
Sbjct: 142 LIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKMGDAIRVRDEMLKV 201

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           G        N+LI G C +G+  E   L   M +  +  D  +Y TL+ GYC++G
Sbjct: 202 GLKMNLFVCNSLINGYCKNGQVHEGERLLMCMRKLDLKPDSYSYCTLVDGYCRDG 256



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 4/179 (2%)

Query: 251 GRVSELLHT---MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           G V   LH    M    R P   +   +++ L K  +   A  V++ ++    VPD    
Sbjct: 10  GMVKNALHVFDNMGKYGRKPSLRSCNSLLSNLVKRGESYSAVLVYDQMRRLDIVPDVFTC 69

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
             +++  CK G +  A +   EM   G   N  +YNS++ GY  + ++E AK + K M +
Sbjct: 70  AIMVNAYCKAGKVERAVEFVREMEKLGFELNAVSYNSLVDGYVSLGDIEGAKGVLKFMSE 129

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
           KG     VT   LI G C   + +EA  +  EM ++ G+  D   Y  LI GYCK GK+
Sbjct: 130 KGVMRNKVTLTLLIKGYCKQCKVEEAEKVLREMEKEDGVVVDEYAYGALIDGYCKVGKM 188



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 122/284 (42%), Gaps = 26/284 (9%)

Query: 101 GFSPDLVSCNVLFDSLV------EARAFKVAM-DF---LDSTGFSPNPNSLELYIQCLCE 150
           GF+P+++ C+ +  SL       EA      M DF   LD        N+    + C   
Sbjct: 482 GFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVDFDLVLDHRCLEDFQNADIRKLDCWKI 541

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------ 204
           +  ++E+   FS    +        +N A+ G  K  + +   + +  L    +      
Sbjct: 542 ADTLDESAIKFSLPNNV-------VYNIAMAGLCKSGKVNDARRFFLGLSHGSFTPDNFT 594

Query: 205 ---LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV 261
              LI  F   G V+E + L  +++  GLVP  T +N L++  C+     R   L   + 
Sbjct: 595 YCTLIHGFSAAGYVNEAFNLRDEMVNKGLVPNITTYNALLNGLCKSGYLDRARRLFDKLH 654

Query: 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
            +   P+  TY  +I+G CKS    EA  +   + + G  P  + Y+++I+G CK   + 
Sbjct: 655 LKGLIPNVVTYNILIDGYCKSGSPREALDLRGKMLKEGISPSIITYSSLINGFCKQSDVE 714

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           +A K+  EM    +     T++ ++ G  +  ++++  +LH  M
Sbjct: 715 EAMKLLNEMKASNVDQTIATFSKLVEGCIQHGDVKKMSKLHNMM 758


>gi|356528166|ref|XP_003532676.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Glycine max]
          Length = 852

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 9/295 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           P     +     L + G++EEA   F K+ +  V   +++ N  L    K  +  L    
Sbjct: 179 PGFGVFDTLFNVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKSSKGGLALSF 238

Query: 196 YHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
           + D++ +G          +I     +G +     L  ++   GL P+   +N LI  + +
Sbjct: 239 FKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTYNSLIDGYGK 298

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                    +   M      PD  TY  +IN  CK  +  +A+   + +K+RG  P+ V 
Sbjct: 299 VGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVT 358

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y+T+I   CK G L +A K + +MI  GL PNE+TY S+I   C+I +L EA +L  EM 
Sbjct: 359 YSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQ 418

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
             G     VTY  L+ GLC  GR  EA  LF  + + G   +   Y +L  GY K
Sbjct: 419 QAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIK 473



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 104/413 (25%), Positives = 179/413 (43%), Gaps = 62/413 (15%)

Query: 66  PSFNFNDPLFFREFLKQQNNVLLSIRFFQ------WLHSHYGFSPDLVSCNVLFDSLVEA 119
           P F   D LF         NVL+ +   +      W  + +   P + SCN L   L ++
Sbjct: 179 PGFGVFDTLF---------NVLVDLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRLSKS 229

Query: 120 RAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
               +A+ F       G SP+  +  + I CL   G +E A   F ++K  G+   I T+
Sbjct: 230 SKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDIVTY 289

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLE 227
           NS + G  K+        ++ ++ ++G          LI  FC   ++ + +E L  + +
Sbjct: 290 NSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQ 349

Query: 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
            GL P    ++ LI  FC+       ++    M+     P+ FTY  +I+  CK     E
Sbjct: 350 RGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNE 409

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A+++ +++++ G   + V YT ++ GLC+ G + +A +++  ++  G   N+  Y S+ H
Sbjct: 410 AFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGWTLNQQIYTSLFH 469

Query: 348 GY-----------------------------------CRIDNLEEAKRLHKEMLDKGYGE 372
           GY                                   CR + +E++  + +EM+D G   
Sbjct: 470 GYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTA 529

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  Y TLI      G+T EA +L +EM   GI   V+TY  LI G CK G +
Sbjct: 530 NSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLV 582



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/350 (27%), Positives = 163/350 (46%), Gaps = 20/350 (5%)

Query: 93  FQWLHS--HYGFSPDLVSCNVLFDS------LVEARAFKVAMDFLDSTGFSPNPNSLELY 144
           F++LH     G  P++V+ + L D+      L+EA  F V M      G  PN  +    
Sbjct: 341 FEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEANKFFVDMI---RVGLQPNEFTYTSL 397

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I   C+ G + EAF   S++++ GV  +I T+ + L G  +  R     +L+  L+++G+
Sbjct: 398 IDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDGLCEDGRMREAEELFGALLKAGW 457

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L   +     + +  ++L ++ +  L P+   +   I   C +        
Sbjct: 458 TLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMA 517

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           ++  M+      +++ Y  +I+   K  K  EA  +  ++++ G     V Y  +I GLC
Sbjct: 518 VIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLC 577

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K+G +  A + +  M   GL PN   Y ++I G C+ D LEEAK L  EMLDKG     +
Sbjct: 578 KIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKL 637

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            Y +LI G   HG   EA  L   M + G+  D+  Y +LI G+ + G++
Sbjct: 638 VYTSLIDGNMKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQV 687



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 151/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+++ N L +   +      A ++L      G  PN  +    I   C++G++ EA
Sbjct: 316 GCEPDVITYNSLINCFCKFERIPQAFEYLHGMKQRGLQPNVVTYSTLIDAFCKAGMLLEA 375

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  +  +G+  +  T+ S +    KI   +  +KL  ++ ++G          L+  
Sbjct: 376 NKFFVDMIRVGLQPNEFTYTSLIDANCKIGDLNEAFKLESEMQQAGVNLNIVTYTALLDG 435

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DG++ E  EL   +L+ G       +  L   + + K   +  ++L  M  +N  PD
Sbjct: 436 LCEDGRMREAEELFGALLKAGWTLNQQIYTSLFHGYIKAKMMEKAMDILEEMNKKNLKPD 495

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y   I GLC+  +  ++  V  ++ + G   ++ +YTT+I    K+G   +A  +  
Sbjct: 496 LLLYGTKIWGLCRQNEIEDSMAVIREMMDCGLTANSYIYTTLIDAYFKVGKTTEAVNLLQ 555

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM   G+     TY  +I G C+I  +++A R    M   G     + Y  LI GLC + 
Sbjct: 556 EMQDLGIKITVVTYGVLIDGLCKIGLVQQAVRYFDHMTRNGLQPNIMIYTALIDGLCKND 615

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
             +EA +LF EM  KGI  D + Y +LI G  K G
Sbjct: 616 CLEEAKNLFNEMLDKGISPDKLVYTSLIDGNMKHG 650



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 99/207 (47%), Gaps = 10/207 (4%)

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGL 279
           R V   G    +T FN L+       + G + E        N+    P   +  E+++ L
Sbjct: 174 RNVCRPGFGVFDTLFNVLV-------DLGMLEEARQCFWKMNKFRVLPKVRSCNELLHRL 226

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            KS K   A   F D+   G  P    Y  VI  L + G L  AR ++ EM  KGL P+ 
Sbjct: 227 SKSSKGGLALSFFKDMVVAGLSPSVFTYNMVIGCLAREGDLEAARSLFEEMKAKGLRPDI 286

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYNS+I GY ++  L  A  + +EM D G     +TYN+LI   C   R  +A+     
Sbjct: 287 VTYNSLIDGYGKVGMLTGAVSVFEEMKDAGCEPDVITYNSLINCFCKFERIPQAFEYLHG 346

Query: 400 MAQKGIFRDVITYNTLIQGYCKEGKIV 426
           M Q+G+  +V+TY+TLI  +CK G ++
Sbjct: 347 MKQRGLQPNVVTYSTLIDAFCKAGMLL 373



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 116/276 (42%), Gaps = 12/276 (4%)

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEAFCAFSKLKEMG 168
           LF   ++A+  + AMD L+          L LY   I  LC    IE++     ++ + G
Sbjct: 467 LFHGYIKAKMMEKAMDILEEMNKKNLKPDLLLYGTKIWGLCRQNEIEDSMAVIREMMDCG 526

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDL---------IESGYLIQAFCNDGKVSEGY 219
           +  +   + + +    K+ +T     L  ++         +  G LI   C  G V +  
Sbjct: 527 LTANSYIYTTLIDAYFKVGKTTEAVNLLQEMQDLGIKITVVTYGVLIDGLCKIGLVQQAV 586

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
                +  +GL P    +  LI   C+         L + M+ +  +PD   Y  +I+G 
Sbjct: 587 RYFDHMTRNGLQPNIMIYTALIDGLCKNDCLEEAKNLFNEMLDKGISPDKLVYTSLIDGN 646

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            K     EA  + N + E G   D   YT++I G  + G +  A+ +  EM+ KG++P++
Sbjct: 647 MKHGNPGEALSLRNRMVEIGMELDLCAYTSLIWGFSRYGQVQLAKSLLDEMLRKGIIPDQ 706

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
                ++  Y  + ++ EA  LH +M  +G    T+
Sbjct: 707 VLCICLLRKYYELGDINEALALHDDMARRGLISGTI 742


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 95/374 (25%), Positives = 164/374 (43%), Gaps = 48/374 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  + N+L D  +++     A + L    +   +P+P +  + I  LC S  +++A
Sbjct: 411 GIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKA 470

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
                ++   GV  ++  + + +   ++  R ++  +L   +I +G L         I  
Sbjct: 471 NEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIG 530

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   KV E   LL  + E G+ P    +   I+ + +             M++    P+
Sbjct: 531 LCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPN 590

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N  Y  +I G C     +EA   F  + E+G +PD   Y+ +IH L K G   +A  ++ 
Sbjct: 591 NVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFL 650

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA--GLCL 386
           + +  G++P+ + YNS+I G+C+  ++E+A +L+ EML  G     V YNTLI   G C 
Sbjct: 651 KFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCK 710

Query: 387 HGRTDEAYHLFEEMAQKGIFRD----------------------------------VITY 412
            G   EA+ LF+EM  KGI  D                                  +  +
Sbjct: 711 SGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAF 770

Query: 413 NTLIQGYCKEGKIV 426
           N+LI  +CK GK++
Sbjct: 771 NSLIDSFCKHGKVI 784



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 165/372 (44%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVE---ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD  +  +L D   +   ++  K+  + + S+G +PN  +    I    + G IEEA
Sbjct: 306 GLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEA 365

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------- 203
                ++   G+  ++ T+N+ + G  K         L+++++ +G              
Sbjct: 366 LRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDG 425

Query: 204 ------------------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
                                          LI   C+   + +  E+L Q++ +G+ P 
Sbjct: 426 YLKSHDMAKACELLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPN 485

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +  LI  + ++  +    ELL  M+A    PD F Y  +I GLC+++K  EA  +  
Sbjct: 486 VFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLV 545

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           D+ E+G  P+   Y   I+   K G +  A + + +M+  G++PN   Y  +I G+C + 
Sbjct: 546 DMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVG 605

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
           N  EA    K ML+KG       Y+ +I  L  +G+T EA  +F +  + G+  DV  YN
Sbjct: 606 NTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYN 665

Query: 414 TLIQGYCKEGKI 425
           +LI G+CKEG I
Sbjct: 666 SLISGFCKEGDI 677



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 148/335 (44%), Gaps = 12/335 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD---FLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P+L + N     L +  A   A++    +   G  P+ ++  L +   C+    +EA   
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F  +   G+  +  T+ + + G IK    +   ++  ++I  G          +I     
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G++++   L  ++L  G+ P+   +N LI  + +  +  +  ELL  M AR   P  FT
Sbjct: 394 AGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFT 453

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLC S    +A  V + +   G  P+  MY T+I    +      A ++   MI
Sbjct: 454 YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIELLKIMI 513

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+LP+ + YN +I G CR   +EEAK L  +M +KG      TY   I      G   
Sbjct: 514 ANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQ 573

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            A   F++M   GI  + + Y  LI+G+C  G  V
Sbjct: 574 VAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTV 608



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 152/341 (44%), Gaps = 43/341 (12%)

Query: 94  QWLHSHYGFSPDLVSCNV------LFDSLVEARAFKVAMDFLDST-------GFSPNPNS 140
           Q+LHS+   +  L +  +      + + L++ R  K  ++ LDS        G S N   
Sbjct: 118 QYLHSYSILAIRLCNSGLIHQADNMLEKLLQTR--KPPLEILDSLVRCYREFGGS-NLTV 174

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
            +++I      G + EA   F      G F ++   N+ +   +K +   L WK+Y  ++
Sbjct: 175 FDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMV 234

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
           E+                           +VP+   +  +I   C+  +  +   +L  M
Sbjct: 235 EAK--------------------------IVPDVYTYTNVIKAHCKVGDVIKGKMVLSEM 268

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
             +   P+ FTY   I GLC++    EA  V   + E+G  PD   YT ++ G CK    
Sbjct: 269 -EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRS 327

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A+ ++  M   GL PN +TY ++I G+ +  N+EEA R+  EM+ +G     VTYN +
Sbjct: 328 KEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           I G+   G   +A  LF EM   GI  D  TYN LI GY K
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLK 428



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 154/354 (43%), Gaps = 49/354 (13%)

Query: 117 VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW 176
           V  R FK   D L S+G  PN     + I+  C+ G   EA   F  + E G+   I+ +
Sbjct: 574 VAERYFK---DML-SSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAY 629

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLE 227
           ++ +    K  +T     ++   +++G          LI  FC +G + +  +L  ++L 
Sbjct: 630 SAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLH 689

Query: 228 DGLVPENTAFNKLISRF--CEKKNFGRVSELLHTMVARNRAPDNFTY------------- 272
           +G+ P    +N LI+ +  C+  N     +L   M+++  +PD + Y             
Sbjct: 690 NGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNL 749

Query: 273 ---------------------EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
                                  +I+  CK  K +EA  +F+D+ ++   P+ V YT +I
Sbjct: 750 EKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILI 809

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
               K   + +A +++ +M  + ++PN  TY S++  Y +I N  +   L K+M  +G  
Sbjct: 810 DAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIA 869

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + Y  + +  C  G++ EA  L  +   +GI  +   ++ LI   CKE +I
Sbjct: 870 CDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQI 923



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 103/214 (48%), Gaps = 1/214 (0%)

Query: 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272
           G ++E   +    + +G  P     N L+    +    G   ++  +MV     PD +TY
Sbjct: 186 GFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTY 245

Query: 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
             VI   CK    ++   V +++ E+   P+   Y   I GLC+ G + +A ++   M+ 
Sbjct: 246 TNVIKAHCKVGDVIKGKMVLSEM-EKECKPNLFTYNAFIGGLCQTGAVDEALEVKKLMME 304

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392
           KGL P+ +TY  ++ G+C+    +EAK + + M   G      TY  LI G    G  +E
Sbjct: 305 KGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLNPNRFTYTALIDGFIKEGNIEE 364

Query: 393 AYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           A  + +EM  +G+  +V+TYN +I G  K G++ 
Sbjct: 365 ALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMA 398



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 90/400 (22%), Positives = 164/400 (41%), Gaps = 57/400 (14%)

Query: 76  FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFD------SLVEA-RAFKVAMDF 128
           F     +   + ++ R+F+ + S  G  P+ V   +L        + VEA   FK  ++ 
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSS-GIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLE- 619

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
               G  P+  +    I  L ++G  +EA   F K  + GV   +  +NS + G  K   
Sbjct: 620 ---KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGD 676

Query: 189 TDLVWKLYHDLIESGY---------LIQ--AFCNDGKVSEGYELLRQVLEDGLVPEN--- 234
            +   +LY +++ +G          LI    +C  G ++E ++L  +++  G+ P+    
Sbjct: 677 IEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIY 736

Query: 235 -------------------------------TAFNKLISRFCEKKNFGRVSELLHTMVAR 263
                                          +AFN LI  FC+        EL   MV +
Sbjct: 737 CILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDK 796

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              P+  TY  +I+   K+    EA ++F D++ R  +P+T+ YT+++    ++G     
Sbjct: 797 KLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKM 856

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             ++ +M  +G+  +   Y  M   YC+     EA +L  + L +G       ++ LI  
Sbjct: 857 ISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFH 916

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           LC   +      L  EM ++ +     T NTL+ G+ K G
Sbjct: 917 LCKEKQISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSG 956



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/326 (23%), Positives = 132/326 (40%), Gaps = 15/326 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQ-- 146
           F ++L +  G  PD+   N L     +    + A    D     G +PN       I   
Sbjct: 649 FLKFLKT--GVVPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDY 706

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-- 204
             C+SG + EAF  F ++   G+      +   + GC K    +    L+H+  +     
Sbjct: 707 GYCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS 766

Query: 205 ------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI +FC  GKV E  EL   +++  L P    +  LI  + + +      +L  
Sbjct: 767 LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFL 826

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M  RN  P+  TY  ++    +   R +   +F D++ RG   D + Y  +    CK G
Sbjct: 827 DMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEG 886

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
              +A K+  + + +G+   +  ++++I   C+   +     L  EM  +    ++ T N
Sbjct: 887 KSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSLSSKTCN 946

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKG 404
           TL+ G    G  DEA  +   M + G
Sbjct: 947 TLLLGFYKSGNEDEASKVLGVMQRLG 972



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 132/308 (42%), Gaps = 21/308 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEAR------AFKVAMDFLDSTGFSPNPNSLELYIQCLCESG 152
           H G +P++V  N L +     +      AFK+  D + S G SP+     + I    + G
Sbjct: 689 HNGINPNIVVYNTLINDYGYCKSGNLTEAFKL-FDEMISKGISPDGYIYCILIDGCGKEG 747

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            +E+A   F + ++  V GS+  +NS +    K  +     +L+ D+++           
Sbjct: 748 NLEKALSLFHEAQQKSV-GSLSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYT 806

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI A+     + E  +L   +    ++P    +  L+  + +  N  ++  L   M AR
Sbjct: 807 ILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEAR 866

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             A D   Y  + +  CK  K LEA ++ N     G   +  ++  +I  LCK   +   
Sbjct: 867 GIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTV 926

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  EM  + L  +  T N+++ G+ +  N +EA ++   M   G+  T+++    I+ 
Sbjct: 927 LELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTDSIS- 985

Query: 384 LCLHGRTD 391
               GR D
Sbjct: 986 ---TGRDD 990



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 22/242 (9%)

Query: 79  FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP 138
           F + Q   + S+  F  L   +     ++    LFD +V+ +              +PN 
Sbjct: 756 FHEAQQKSVGSLSAFNSLIDSFCKHGKVIEARELFDDMVDKK-------------LTPNI 802

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +  + I    ++ ++EEA   F  ++   +  +  T+ S LL   +I     +  L+ D
Sbjct: 803 VTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKD 862

Query: 199 L---------IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +         I  G +  A+C +GK  E  +LL + L +G+  E+  F+ LI   C++K 
Sbjct: 863 MEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQ 922

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
              V ELL  M     +  + T   ++ G  KS    EA +V   ++  G+VP ++  T 
Sbjct: 923 ISTVLELLSEMGKEELSLSSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLSLTD 982

Query: 310 VI 311
            I
Sbjct: 983 SI 984


>gi|15224753|ref|NP_179518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334184304|ref|NP_001189552.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546774|sp|Q6NKW7.2|PP164_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g19280
 gi|3135258|gb|AAC16458.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|330251769|gb|AEC06863.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330251770|gb|AEC06864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 693

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 177/371 (47%), Gaps = 19/371 (5%)

Query: 64  DIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           DI +F  F D L    FLK+  +VL  ++ F       G S D VS + + D   +    
Sbjct: 305 DIVAFTVFIDKLCKAGFLKEATSVLFKLKLF-------GISQDSVSVSSVIDGFCKVGKP 357

Query: 123 KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           + A+  + S    PN      ++  +C +G +  A   F ++ E+G+      + + + G
Sbjct: 358 EEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDG 417

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
              + RTD  ++ +  L++SG          LI A    G +S+   + R +  +GL  +
Sbjct: 418 YCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLD 477

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N L+  + +     +V EL+  M +   +PD  TY  +I+ +       EA  + +
Sbjct: 478 VVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIIS 537

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           +L  RG+VP T+ +T VI G  K G   +A  +WF M    + P+  T ++++HGYC+  
Sbjct: 538 ELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQ 597

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +E+A  L  ++LD G     V YNTLI G C  G  ++A  L   M Q+G+  +  T++
Sbjct: 598 RMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHH 657

Query: 414 TLIQGYCKEGK 424
            L+ G   EGK
Sbjct: 658 ALVLGL--EGK 666



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 21/342 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           HYG  PD+V+  V  D L +A   K A   L      G S +  S+   I   C+ G  E
Sbjct: 299 HYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPE 358

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------I 206
           EA       +   +  +I  ++S L              ++ ++ E G L         I
Sbjct: 359 EAIKLIHSFR---LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMI 415

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVAR 263
             +CN G+  + ++    +L+ G  P  T    LI   C +  FG +S+   +   M   
Sbjct: 416 DGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGA-CSR--FGSISDAESVFRNMKTE 472

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
               D  TY  +++G  K+ +  + + + ++++  G  PD   Y  +IH +   G++ +A
Sbjct: 473 GLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEA 532

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  E+I +G +P+   +  +I G+ +  + +EA  L   M D       VT + L+ G
Sbjct: 533 NEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHG 592

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C   R ++A  LF ++   G+  DV+ YNTLI GYC  G I
Sbjct: 593 YCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDI 634



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI     + KV+   +L  +V + G+ P       L+             E +  M++R 
Sbjct: 207 LIDCCIRERKVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRG 266

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
           R  +       I   C      + + +   +K  G  PD V +T  I  LCK G+L +A 
Sbjct: 267 RHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEAT 326

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLHKEMLDKGYGETTVTYNTLIAG 383
            + F++   G+  +  + +S+I G+C++   EEA K +H   L          Y++ ++ 
Sbjct: 327 SVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP----NIFVYSSFLSN 382

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +C  G    A  +F+E+ + G+  D + Y T+I GYC  G+
Sbjct: 383 ICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGR 423


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 117/204 (57%)

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
           LR++   GLVP+   +  +I  FC          +   MV     PD  TY  ++NGLCK
Sbjct: 4   LREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCK 63

Query: 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341
            R+ L+A  + N+++ERG  PD   +TT+IHG C  G L  A +++  M+++ L P+  T
Sbjct: 64  ERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVT 123

Query: 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401
           YN++I G CR  +L++A  L  +M  +      VTY+ LI   C  G+ ++A+   +EM 
Sbjct: 124 YNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMI 183

Query: 402 QKGIFRDVITYNTLIQGYCKEGKI 425
            KGI  +++TYN++I+GYC+ G +
Sbjct: 184 NKGILPNIMTYNSIIKGYCRSGNV 207



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 147/300 (49%), Gaps = 9/300 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+     + I   C +GL+ +A     ++   G    + T+N+ L G  K  R    
Sbjct: 11  GLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDA 70

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
             L +++ E G          LI  +C +GK+ +  +L   +L   L P+   +N LI  
Sbjct: 71  EGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDG 130

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
            C + +  + ++L   M +R   P++ TY  +I+  C+  +  +A+   +++  +G +P+
Sbjct: 131 MCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPN 190

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            + Y ++I G C+ G +   +K   +M+   + P+  TYN++IHGY + D + +A +L  
Sbjct: 191 IMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLN 250

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            M  +      VTYN LI G  +HG   EA  +FE+M  KGI  D  TY ++I G+   G
Sbjct: 251 MMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAG 310



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/221 (31%), Positives = 117/221 (52%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I  FC  G +S+   +  +++  G +P+   +N L++  C+++       LL+ M  R 
Sbjct: 22  VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 81

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             PD  T+  +I+G C   K  +A ++F+ +  +   PD V Y T+I G+C+ G L  A 
Sbjct: 82  VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKAN 141

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            +W +M  + + PN  TY+ +I  +C    +E+A     EM++KG     +TYN++I G 
Sbjct: 142 DLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGY 201

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C  G   +     ++M    +  D+ITYNTLI GY KE K+
Sbjct: 202 CRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKM 242



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/283 (26%), Positives = 140/283 (49%), Gaps = 12/283 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+ N L + L + R    A   L+     G  P+  +    I   C  G +++A
Sbjct: 46  GCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKA 105

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVW------KLYHDLIESGYLIQA 208
              F  +    +   I T+N+ + G  +   +D+ + +W      +++ + +    LI +
Sbjct: 106 LQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDS 165

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V + +  L +++  G++P    +N +I  +C   N  +  + L  M+    +PD
Sbjct: 166 HCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPD 225

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G  K  K  +A+++ N +++    PD V Y  +I+G    G + +A  ++ 
Sbjct: 226 LITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFE 285

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
           +M  KG+ P+ YTY SMI+G+    N +EA +LH EML +G+ 
Sbjct: 286 KMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFA 328



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 12/321 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G  PD V   ++      A     A+   D +   G  P+  +    +  LC+   + +
Sbjct: 10  FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 69

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLG-CI--KIDR------TDLVWKLYHDLIESGYLIQ 207
           A    ++++E GV   + T+ + + G CI  K+D+      T L  +L  D++    LI 
Sbjct: 70  AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLID 129

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C  G + +  +L   +    + P +  ++ LI   CEK         L  M+ +   P
Sbjct: 130 GMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILP 189

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           +  TY  +I G C+S    +  +    +      PD + Y T+IHG  K   + DA K+ 
Sbjct: 190 NIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLL 249

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             M  + + P+  TYN +I+G+    N++EA  + ++M  KG      TY ++I G    
Sbjct: 250 NMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTA 309

Query: 388 GRTDEAYHLFEEMAQKGIFRD 408
           G + EA+ L +EM Q+G   D
Sbjct: 310 GNSKEAFQLHDEMLQRGFAPD 330



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 104/239 (43%), Gaps = 29/239 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+V+ N L D +        A D  D   S    PN  +  + I   CE G +E+AF  
Sbjct: 119 PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGF 178

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
             ++   G+  +I T+NS                          +I+ +C  G VS+G +
Sbjct: 179 LDEMINKGILPNIMTYNS--------------------------IIKGYCRSGNVSKGQK 212

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
            L++++ + + P+   +N LI  + ++       +LL+ M      PD  TY  +ING  
Sbjct: 213 FLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFS 272

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
                 EA  +F  +  +G  PD   Y ++I+G    G   +A ++  EM+ +G  P++
Sbjct: 273 VHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPDD 331



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 35/65 (53%)

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +EM   G     V Y  +I G C  G   +A  + +EM   G   DV+TYNTL+ G CKE
Sbjct: 5   REMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKE 64

Query: 423 GKIVN 427
            ++++
Sbjct: 65  RRLLD 69


>gi|46518477|gb|AAS99720.1| At2g19280 [Arabidopsis thaliana]
 gi|62319953|dbj|BAD94048.1| putative salt-inducible protein [Arabidopsis thaliana]
 gi|110738808|dbj|BAF01327.1| putative salt-inducible protein [Arabidopsis thaliana]
          Length = 693

 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 177/371 (47%), Gaps = 19/371 (5%)

Query: 64  DIPSFN-FNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF 122
           DI +F  F D L    FLK+  +VL  ++ F       G S D VS + + D   +    
Sbjct: 305 DIVAFTVFIDKLCKAGFLKEATSVLFKLKLF-------GISQDSVSVSSVIDGFCKVGKP 357

Query: 123 KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182
           + A+  + S    PN      ++  +C +G +  A   F ++ E+G+      + + + G
Sbjct: 358 EEAIKLIHSFRLRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDG 417

Query: 183 CIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233
              + RTD  ++ +  L++SG          LI A    G +S+   + R +  +GL  +
Sbjct: 418 YCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGACSRFGSISDAESVFRNMKTEGLKLD 477

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N L+  + +     +V EL+  M +   +PD  TY  +I+ +       EA  + +
Sbjct: 478 VVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEANEIIS 537

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           +L  RG+VP T+ +T VI G  K G   +A  +WF M    + P+  T ++++HGYC+  
Sbjct: 538 ELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHGYCKAQ 597

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
            +E+A  L  ++LD G     V YNTLI G C  G  ++A  L   M Q+G+  +  T++
Sbjct: 598 RMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHH 657

Query: 414 TLIQGYCKEGK 424
            L+ G   EGK
Sbjct: 658 ALVLGL--EGK 666



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 21/342 (6%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
           HYG  PD+V+  V  D L +A   K A   L      G S +  S+   I   C+ G  E
Sbjct: 299 HYGIRPDIVAFTVFIDKLCKAGFLKEATSVLFKLKLFGISQDSVSVSSVIDGFCKVGKPE 358

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------I 206
           EA       +   +  +I  ++S L              ++ ++ E G L         I
Sbjct: 359 EAIKLIHSFR---LRPNIFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCVCYTTMI 415

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVAR 263
             +CN G+  + ++    +L+ G  P  T    LI   C +  FG +S+   +   M   
Sbjct: 416 DGYCNLGRTDKAFQYFGALLKSGNPPSLTTSTILIGA-CSR--FGSISDAESVFRNMKTE 472

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
               D  TY  +++G  K+ +  + + + ++++  G  PD   Y  +IH +   G++ +A
Sbjct: 473 GLKLDVVTYNNLMHGYGKTHQLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYIDEA 532

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  E+I +G +P+   +  +I G+ +  + +EA  L   M D       VT + L+ G
Sbjct: 533 NEIISELIRRGFVPSTLAFTDVIGGFSKRGDFQEAFILWFYMADLRMKPDVVTCSALLHG 592

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            C   R ++A  LF ++   G+  DV+ YNTLI GYC  G I
Sbjct: 593 YCKAQRMEKAIVLFNKLLDAGLKPDVVLYNTLIHGYCSVGDI 634



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 98/221 (44%), Gaps = 5/221 (2%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           LI     + KV+   +L  +V + G+ P       L+             E +  M++R 
Sbjct: 207 LIDCCIRERKVNMALKLTYKVDQFGIFPSRGVCISLLKEILRVHGLELAREFVEHMLSRG 266

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
           R  +       I   C      + + +   +K  G  PD V +T  I  LCK G+L +A 
Sbjct: 267 RHLNAAVLSLFIRKYCSDGYFDKGWELLMGMKHYGIRPDIVAFTVFIDKLCKAGFLKEAT 326

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA-KRLHKEMLDKGYGETTVTYNTLIAG 383
            + F++   G+  +  + +S+I G+C++   EEA K +H   L          Y++ ++ 
Sbjct: 327 SVLFKLKLFGISQDSVSVSSVIDGFCKVGKPEEAIKLIHSFRLRP----NIFVYSSFLSN 382

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +C  G    A  +F+E+ + G+  D + Y T+I GYC  G+
Sbjct: 383 ICSTGDMLRASTIFQEIFELGLLPDCVCYTTMIDGYCNLGR 423


>gi|413955492|gb|AFW88141.1| hypothetical protein ZEAMMB73_138069 [Zea mays]
          Length = 1091

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 164/337 (48%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++ S  +    L +A  F  A   L   + +G  P+  +  + IQ LC++G + +A
Sbjct: 236 GVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDA 295

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F K+K         T+ + L  C     +  V ++++ ++  GY         ++ A
Sbjct: 296 KAVFWKMKASDQKPDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDA 355

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  G+V E   +  ++ E G+ PE  ++N LIS F +   F R  EL + M A   +P+
Sbjct: 356 LCQVGRVDEALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPN 415

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+   IN   KS + L+A + +  +K +G VPD      V++ L   G LG A+++++
Sbjct: 416 GYTHVLFINYYGKSGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFY 475

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           E+   G+ P+  TY  MI    +    +EA     +M++ G     +  N+LI  L   G
Sbjct: 476 ELKAMGVSPDTITYTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGG 535

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + +EA+ LF ++ +  I     TYNTL+ G  +EGK+
Sbjct: 536 KGNEAWQLFHKLKEMKIEPTNGTYNTLLSGLGREGKV 572



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 152/327 (46%), Gaps = 12/327 (3%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G S    S N L   LV+     +A D    +   G  P+  +  L +  + +S  +EE 
Sbjct: 761  GVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAMGKSMRVEEM 820

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 ++   G   +  T+N+ + G +K  R +    LY++L+  G+         L+  
Sbjct: 821  LKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTPCTYGPLLDG 880

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                GK+ +   L  ++LE G  P  T +N L++      N   V +L   MV +   PD
Sbjct: 881  LLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEKMVEQGINPD 940

Query: 269  NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              +Y  +I+ LC + +  +    F  L E G  PD ++Y  +I GL K   + +A  ++ 
Sbjct: 941  IKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSERIEEAVSLFN 1000

Query: 329  EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            EM  KG++PN YTYNS+I    +     EA ++++E+L KG+  +  TYN LI G  + G
Sbjct: 1001 EMKKKGIIPNLYTYNSLILHLGKAGKAAEAAQMYEELLRKGWKPSVFTYNALIRGYSVSG 1060

Query: 389  RTDEAYHLFEEMAQKGIFRDVITYNTL 415
             TD AY  + +M   G   +  TY  L
Sbjct: 1061 STDNAYAAYGQMIVGGCQPNSSTYMQL 1087



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 157/330 (47%), Gaps = 12/330 (3%)

Query: 110 NVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N L   L      K  M  L+    T + PN  +    + CL ++G +  A      + E
Sbjct: 560 NTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLYSMTE 619

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLY---HDLIESGY-----LIQAFCNDGKVSEG 218
            G    + ++N+ + G IK +R +  ++++     ++   Y     ++ +F  +G + E 
Sbjct: 620 KGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEA 679

Query: 219 YELLRQ-VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
              +++ +L+ G   + ++F+ L+    +K    +  E    + +R    ++F    +I 
Sbjct: 680 LHTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIR 739

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            LCK +K LEA+++FN  K  G    T  Y ++I GL     +  A  ++ EM   G  P
Sbjct: 740 HLCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGP 799

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +E+TYN ++    +   +EE  ++ KEM  KGY  T VTYNT+I+GL    R ++A  L+
Sbjct: 800 DEFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLY 859

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             +  +G      TY  L+ G  K GK+V+
Sbjct: 860 YNLMSEGFSPTPCTYGPLLDGLLKSGKMVD 889



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/334 (24%), Positives = 155/334 (46%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD V+   L D   ++   +  ++    + + G++ N  S    +  LC+ G ++EA   
Sbjct: 309 PDRVTYITLLDKCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVDEALAV 368

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN 211
           F ++KE G+     ++NS + G +K D  D   +L++ +   G           I  +  
Sbjct: 369 FDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGK 428

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            G+  +  +    +   G+VP+  A N ++         G    + + + A   +PD  T
Sbjct: 429 SGQSLKAIQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTIT 488

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I    K+ K  EA   F+D+ E G VPD +   ++I  L K G   +A +++ ++ 
Sbjct: 489 YTMMIKCCSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLK 548

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              + P   TYN+++ G  R   ++E  +L +EM    Y    +TYNT++  L  +G  +
Sbjct: 549 EMKIEPTNGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVN 608

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            A  +   M +KG   D+ +YNT++ G  KE ++
Sbjct: 609 CAIDMLYSMTEKGCAPDLSSYNTVMYGLIKEERL 642



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 150/338 (44%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP+  S N L    ++A  F  A++    +++ G SPN  +  L+I    +SG   +A
Sbjct: 376 GMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFINYYGKSGQSLKA 435

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              +  +K  G+   +   N+ L       R  +  +++++L   G          +I+ 
Sbjct: 436 IQRYEHMKSKGIVPDVAAANAVLYSLAGSGRLGMAKRVFYELKAMGVSPDTITYTMMIKC 495

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
                K  E       ++E G VP+  A N LI    +        +L H +      P 
Sbjct: 496 CSKASKADEAMNFFSDMVESGCVPDVLALNSLIDTLYKGGKGNEAWQLFHKLKEMKIEPT 555

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           N TY  +++GL +  K  E  ++  ++    Y P+ + Y TV+  L K G +  A  M +
Sbjct: 556 NGTYNTLLSGLGREGKVKEVMQLLEEMTRTIYPPNLITYNTVLDCLSKNGEVNCAIDMLY 615

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M  KG  P+  +YN++++G  + + LEEA R+  +M  K       T  T++     +G
Sbjct: 616 SMTEKGCAPDLSSYNTVMYGLIKEERLEEAFRMFCQM-KKILAPDYATLCTILPSFVKNG 674

Query: 389 RTDEAYHLFEE-MAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA H  +E + + G   D  ++++L++G  K+  +
Sbjct: 675 LMKEALHTVKEYILKAGCNVDKSSFHSLMEGILKKAGV 712



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 149/337 (44%), Gaps = 12/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG--FSPNPNSLELYIQCLCESGLIEEAF 158
           G +PDL S N +   L++    + A           +P+  +L   +    ++GL++EA 
Sbjct: 621 GCAPDLSSYNTVMYGLIKEERLEEAFRMFCQMKKILAPDYATLCTILPSFVKNGLMKEAL 680

Query: 159 CAFSK-LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF-------- 209
               + + + G      +++S + G +K    +   +   ++   G L+  F        
Sbjct: 681 HTVKEYILKAGCNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRH 740

Query: 210 -CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K  E ++L  +    G+  +  ++N LI    ++       +L   M      PD
Sbjct: 741 LCKHKKALEAHQLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPD 800

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            FTY  +++ + KS +  E  +V  ++  +GY    V Y T+I GL K   L  A  +++
Sbjct: 801 EFTYNLILDAMGKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYY 860

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            ++ +G  P   TY  ++ G  +   + +A+ L  EML+ G       YN L+ G  + G
Sbjct: 861 NLMSEGFSPTPCTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAG 920

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            T+    LFE+M ++GI  D+ +Y  LI   C  G++
Sbjct: 921 NTENVCQLFEKMVEQGINPDIKSYTILIDTLCTAGRL 957



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/387 (23%), Positives = 176/387 (45%), Gaps = 24/387 (6%)

Query: 42   EIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYG 101
            E  +  C++ +       TL + +PSF  N     +E L      +L            G
Sbjct: 644  EAFRMFCQMKKILAPDYATLCTILPSFVKNG--LMKEALHTVKEYILKA----------G 691

Query: 102  FSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAF 158
             + D  S + L + +++    + +++F   + S G   N   L   I+ LC+     EA 
Sbjct: 692  CNVDKSSFHSLMEGILKKAGVEKSIEFAENIASRGILLNDFFLCPLIRHLCKHKKALEAH 751

Query: 159  CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAF 209
              F+K K +GV     ++NS + G +  +  D+   L+ ++   G          ++ A 
Sbjct: 752  QLFNKFKGLGVSLKTGSYNSLIRGLVDENLIDIAEDLFTEMKRLGCGPDEFTYNLILDAM 811

Query: 210  CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
                +V E  ++ +++   G       +N +IS   + K   +  +L + +++   +P  
Sbjct: 812  GKSMRVEEMLKVQKEMHRKGYESTYVTYNTIISGLVKSKRLEQAIDLYYNLMSEGFSPTP 871

Query: 270  FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
             TY  +++GL KS K ++A  +FN++ E G  P+  +Y  +++G    G   +  +++ +
Sbjct: 872  CTYGPLLDGLLKSGKMVDAENLFNEMLEYGCEPNCTIYNILLNGHRIAGNTENVCQLFEK 931

Query: 330  MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
            M+ +G+ P+  +Y  +I   C    L +     +++ + G     + YN LI GL    R
Sbjct: 932  MVEQGINPDIKSYTILIDTLCTAGRLNDGLCYFRQLHELGLEPDLIVYNLLIDGLGKSER 991

Query: 390  TDEAYHLFEEMAQKGIFRDVITYNTLI 416
             +EA  LF EM +KGI  ++ TYN+LI
Sbjct: 992  IEEAVSLFNEMKKKGIIPNLYTYNSLI 1018



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 124/308 (40%), Gaps = 32/308 (10%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           R+  VA+  +   G S N  +    I  L +SG   EA   +  + E G+  S++T++  
Sbjct: 153 RSAPVALPVMREAGMSLNAYTYNGLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYS-- 210

Query: 180 LLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
                                    L+ AF     V     LL ++   G+ P   ++  
Sbjct: 211 ------------------------VLMVAFGKKRDVDTVLWLLNEMEARGVKPNVYSYTI 246

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
            I    +   F     +L  M      PD  T+  +I  LC + +  +A  VF  +K   
Sbjct: 247 CIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRLSDAKAVFWKMKASD 306

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDAR---KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             PD V Y T++    K G  GD++   ++W  M+  G   N  +Y +++   C++  ++
Sbjct: 307 QKPDRVTYITLLD---KCGDSGDSQSVVEVWNAMVADGYNDNIVSYTAVVDALCQVGRVD 363

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  +  EM +KG      +YN+LI+G       D A  LF  M   G   +  T+   I
Sbjct: 364 EALAVFDEMKEKGMSPEQYSYNSLISGFLKADMFDRALELFNHMNACGPSPNGYTHVLFI 423

Query: 417 QGYCKEGK 424
             Y K G+
Sbjct: 424 NYYGKSGQ 431



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 3/177 (1%)

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           +  +V +L+   V +       T+  +  G+        A      ++E G   +   Y 
Sbjct: 119 DMAQVFDLMQKQVVKTNVG---TFATIFGGVGVEGGLRSAPVALPVMREAGMSLNAYTYN 175

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
            +I+ L K G+  +A +++  M+  G+ P+  TY+ ++  + +  +++    L  EM  +
Sbjct: 176 GLIYFLVKSGFDAEAMEVYKAMVEDGISPSVRTYSVLMVAFGKKRDVDTVLWLLNEMEAR 235

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G      +Y   I  L    R DEAYH+  +M   G   DV+T+  +IQ  C  G++
Sbjct: 236 GVKPNVYSYTICIRVLGQAARFDEAYHILGKMEDSGCKPDVVTHTVIIQVLCDAGRL 292


>gi|15225055|ref|NP_181456.1| lateral organ junction protein [Arabidopsis thaliana]
 gi|75100007|sp|O80958.1|PP194_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g39230, mitochondrial; AltName: Full=Protein LATERAL
           ORGAN JUNCTION; Flags: Precursor
 gi|3402682|gb|AAC28985.1| unknown protein [Arabidopsis thaliana]
 gi|330254554|gb|AEC09648.1| lateral organ junction protein [Arabidopsis thaliana]
          Length = 867

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 82/338 (24%), Positives = 161/338 (47%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G    +++   L +   +      A+D    ++  G +P+     + ++  C++  +E+
Sbjct: 339 FGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNMEMEK 398

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----GYLIQA---- 208
           A   + ++K + +  S    ++ + GC+K +  +   ++++D  ES    G++       
Sbjct: 399 AIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNKIFLL 458

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GKV      L+ + + G+ P    +N ++   C  KN      +   M+ +   P+
Sbjct: 459 FCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEMLEKGLEPN 518

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           NFTY  +I+G  K++    A+ V N +    +  + V+Y T+I+GLCK+G    A++M  
Sbjct: 519 NFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTSKAKEMLQ 578

Query: 329 EMIHKGLLPNEYT-YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            +I +       T YNS+I G+ ++ + + A   ++EM + G     VT+ +LI G C  
Sbjct: 579 NLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSLINGFCKS 638

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            R D A  +  EM    +  D+  Y  LI G+CK+  +
Sbjct: 639 NRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDM 676



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 137/277 (49%), Gaps = 15/277 (5%)

Query: 119 ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178
           ++A ++  + +    +S +  S    I    + G  + A   + ++ E G   ++ T+ S
Sbjct: 571 SKAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTS 630

Query: 179 ALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
            + G  K +R DL  ++ H         DL   G LI  FC    +   Y L  ++ E G
Sbjct: 631 LINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELG 690

Query: 230 LVPENTAFNKLISRFCEKKNFGRVS---ELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
           L+P  + +N LIS F   +N G++    +L   MV    + D FTY  +I+GL K     
Sbjct: 691 LMPNVSVYNSLISGF---RNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNIN 747

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
            A  ++++L + G VPD +++  +++GL K G    A KM  EM  K + PN   Y+++I
Sbjct: 748 LASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKMLEEMKKKDVTPNVLLYSTVI 807

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            G+ R  NL EA RLH EML+KG       +N L++G
Sbjct: 808 AGHHREGNLNEAFRLHDEMLEKGIVHDDTVFNLLVSG 844



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 28/328 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P+  + ++L D   + +  + A D    ++++ F  N       I  LC+ G     
Sbjct: 514 GLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVG----- 568

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               SK KEM            L   IK  R  +    Y+ +I+       F   G    
Sbjct: 569 --QTSKAKEM------------LQNLIKEKRYSMSCTSYNSIID------GFVKVGDTDS 608

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E  R++ E+G  P    F  LI+ FC+        E+ H M +     D   Y  +I+
Sbjct: 609 AVETYREMSENGKSPNVVTFTSLINGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALID 668

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK      AY +F++L E G +P+  +Y ++I G   +G +  A  ++ +M++ G+  
Sbjct: 669 GFCKKNDMKTAYTLFSELPELGLMPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISC 728

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           + +TY +MI G  +  N+  A  L+ E+LD G     + +  L+ GL   G+  +A  + 
Sbjct: 729 DLFTYTTMIDGLLKDGNINLASDLYSELLDLGIVPDEILHMVLVNGLSKKGQFLKASKML 788

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EEM +K +  +V+ Y+T+I G+ +EG +
Sbjct: 789 EEMKKKDVTPNVLLYSTVIAGHHREGNL 816



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 148/331 (44%), Gaps = 13/331 (3%)

Query: 109 CNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           CN +F    +      A  FL   +  G  PN       +   C    ++ A   FS++ 
Sbjct: 452 CNKIFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCRMKNMDLARSIFSEML 511

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVS 216
           E G+  +  T++  + G  K       W + + +  S +         +I   C  G+ S
Sbjct: 512 EKGLEPNNFTYSILIDGFFKNKDEQNAWDVINQMNASNFEANEVIYNTIINGLCKVGQTS 571

Query: 217 EGYELLRQVLEDGLVPEN-TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
           +  E+L+ ++++     + T++N +I  F +  +     E    M    ++P+  T+  +
Sbjct: 572 KAKEMLQNLIKEKRYSMSCTSYNSIIDGFVKVGDTDSAVETYREMSENGKSPNVVTFTSL 631

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           ING CKS +   A  + +++K      D   Y  +I G CK   +  A  ++ E+   GL
Sbjct: 632 INGFCKSNRMDLALEMTHEMKSMELKLDLPAYGALIDGFCKKNDMKTAYTLFSELPELGL 691

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
           +PN   YNS+I G+  +  ++ A  L+K+M++ G      TY T+I GL   G  + A  
Sbjct: 692 MPNVSVYNSLISGFRNLGKMDAAIDLYKKMVNDGISCDLFTYTTMIDGLLKDGNINLASD 751

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           L+ E+   GI  D I +  L+ G  K+G+ +
Sbjct: 752 LYSELLDLGIVPDEILHMVLVNGLSKKGQFL 782



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/342 (20%), Positives = 137/342 (40%), Gaps = 47/342 (13%)

Query: 127 DFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
           + +DS+   GF   P +    +     +  ++ A   F  + +  V   +   N+ L   
Sbjct: 155 NLVDSSKRFGFELTPRAFNYLLNAYIRNKRMDYAVDCFGLMVDRKVVPFVPYVNNVLSSL 214

Query: 184 IKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           ++ +  D   ++Y+ ++  G          L++A   + K  E  ++ R+V+  G  P+ 
Sbjct: 215 VRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERKPEEAVKIFRRVMSRGAEPDG 274

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-DNFTYEEVINGLCKSRKRLEAYRVFN 293
             F+  +   C+  +     +LL  M  +   P    TY  VI    K     EA RV +
Sbjct: 275 LLFSLAVQAACKTPDLVMALDLLREMRGKLGVPASQETYTSVIVAFVKEGNMEEAVRVMD 334

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++   G     +  T++++G CK   LG A  ++  M  +GL P++  ++ M+  +C+  
Sbjct: 335 EMVGFGIPMSVIAATSLVNGYCKGNELGKALDLFNRMEEEGLAPDKVMFSVMVEWFCKNM 394

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAG------------------------------ 383
            +E+A   +  M       ++V  +T+I G                              
Sbjct: 395 EMEKAIEFYMRMKSVRIAPSSVLVHTMIQGCLKAESPEAALEIFNDSFESWIAHGFMCNK 454

Query: 384 ----LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                C  G+ D A    + M QKGI  +V+ YN ++  +C+
Sbjct: 455 IFLLFCKQGKVDAATSFLKMMEQKGIEPNVVFYNNMMLAHCR 496



 Score = 39.3 bits (90), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 21/97 (21%), Positives = 46/97 (47%)

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ + ++P     N+++    R + ++EAK ++ +M+  G     VT   L+       +
Sbjct: 195 MVDRKVVPFVPYVNNVLSSLVRSNLIDEAKEIYNKMVLIGVAGDNVTTQLLMRASLRERK 254

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            +EA  +F  +  +G   D + ++  +Q  CK   +V
Sbjct: 255 PEEAVKIFRRVMSRGAEPDGLLFSLAVQAACKTPDLV 291


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 149/303 (49%), Gaps = 9/303 (2%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
           +G+ PN  ++   ++ +C  G + +A   F K+   G  G I  +   +    K  +   
Sbjct: 3   SGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARR 62

Query: 192 VWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
             +L+  ++           G +I + C DG   +G ++ R+++  G+ P    ++ LI+
Sbjct: 63  AVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLIN 122

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C          L   MV++    +  TY  +I+  C+     EA R F+ +   G +P
Sbjct: 123 GLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILP 182

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D V +TT+I  L K G + +A K++  MI +G  PN  TYNS+++G C    ++ A RL 
Sbjct: 183 DVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLF 242

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           + M+++G     ++YNTLI G C  G+T+EA  LF +M  + +   + TY  L++   + 
Sbjct: 243 EVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQN 302

Query: 423 GKI 425
           G+I
Sbjct: 303 GRI 305



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 171/391 (43%), Gaps = 48/391 (12%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPN 139
           +  V+ ++  F  + +  GF  D++    L ++L + R  + A++    + S   S N  
Sbjct: 22  EGKVMDALELFDKM-TRSGFQGDILLYGYLINALRKTRQARRAVELHRRMLSEICSGNFF 80

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +  L I  LC+ GL  +    F ++  MG+  ++  ++S + G  ++ +      L+ ++
Sbjct: 81  TYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGLCRVGKLREAVNLFDEM 140

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +  G          LI A C  G   E      Q++ +G++P+   F  LI    +K   
Sbjct: 141 VSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKV 200

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               ++   M+ +  AP+  TY  ++NGLC   +   A R+F  + ERG   D + Y T+
Sbjct: 201 QEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTL 260

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I+G C  G   +A  ++ +M ++ L P+  TY  ++    +   +  AK L   M   G 
Sbjct: 261 INGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQ 320

Query: 371 GETTVTYNTLIAGLCLHG-----------------------------------RTDEAYH 395
             +  TY  L+ GLC +G                                   R + A  
Sbjct: 321 SPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAME 380

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           +F+E+   G+  +++TYN +I G CKEGK++
Sbjct: 381 IFDEIPTVGLVPNIVTYNIMINGLCKEGKLL 411



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/280 (27%), Positives = 131/280 (46%), Gaps = 9/280 (3%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G  P+  +    I  L + G ++EA+  F  + + G   +I T+NS L G     + D  
Sbjct: 179 GILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHA 238

Query: 193 WKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
            +L+  ++E G          LI  +C  GK  E   L R++  + L P  T +  L+  
Sbjct: 239 VRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKA 298

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             +        EL + M    ++P   TY  +++GLCK+    EA  VF  LK   Y P 
Sbjct: 299 LYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPS 358

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
             +Y+ +I G+ +      A +++ E+   GL+PN  TYN MI+G C+   L EA+RL  
Sbjct: 359 IRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFV 418

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           +M + G  +  +++N +I G     +  +A    + M +K
Sbjct: 419 QMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREK 458



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 118/269 (43%), Gaps = 70/269 (26%)

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK- 284
           ++ G  P     + L+   C +       EL   M       D   Y  +IN L K+R+ 
Sbjct: 1   MKSGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQA 60

Query: 285 ----------------------------------RLEAYRVFNDLKERGYVPDTVMYTTV 310
                                              ++  ++F ++   G  P+ ++Y+++
Sbjct: 61  RRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSL 120

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR------------------- 351
           I+GLC++G L +A  ++ EM+ +G+  N  TYNS+IH  CR                   
Sbjct: 121 INGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGEGI 180

Query: 352 ----------IDNL------EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
                     ID+L      +EA ++ + M+ +G     VTYN+L+ GLCLH + D A  
Sbjct: 181 LPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVR 240

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           LFE M ++GI  DVI+YNTLI GYC  GK
Sbjct: 241 LFEVMVERGIKIDVISYNTLINGYCTSGK 269



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/387 (22%), Positives = 169/387 (43%), Gaps = 13/387 (3%)

Query: 51  TRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN 110
            R      + +LS+I S NF       + L +    +  ++ F+ +  + G  P+++  +
Sbjct: 60  ARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREM-INMGICPNVIVYS 118

Query: 111 VLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM 167
            L + L      + A++  D   S G   N  +    I   C  GL +EA   FS++   
Sbjct: 119 SLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMVGE 178

Query: 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEG 218
           G+   + T+ + +    K  +    +K++  +I+ G          L+   C   ++   
Sbjct: 179 GILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHA 238

Query: 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278
             L   ++E G+  +  ++N LI+ +C          L   M      P   TY  ++  
Sbjct: 239 VRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKA 298

Query: 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
           L ++ +   A  +FN+++  G  P    YT ++ GLCK G + +A  ++  +      P+
Sbjct: 299 LYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPS 358

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
              Y+ +I G  +    E A  +  E+   G     VTYN +I GLC  G+  EA  LF 
Sbjct: 359 IRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFV 418

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +M + G  +D I++N +I+G+ +E ++
Sbjct: 419 QMEESGCEQDEISFNFIIRGFLQENQV 445



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 119/288 (41%), Gaps = 21/288 (7%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV-------EARAFKVAMDFLD 130
           + L ++  V  + + F+ +    G +P++V+ N L + L          R F+V ++   
Sbjct: 192 DHLSKKGKVQEAYKIFELMIKQ-GEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVE--- 247

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
             G   +  S    I   C SG  EEA   F K++   +  SI T+   L    +  R  
Sbjct: 248 -RGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIR 306

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
              +L++++   G          L+   C +G + E  ++ R +      P    ++ LI
Sbjct: 307 TAKELFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILI 366

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
               + + +    E+   +      P+  TY  +INGLCK  K LEA R+F  ++E G  
Sbjct: 367 GGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCE 426

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
            D + +  +I G  +   +  A +    M  K   PN+     +++ Y
Sbjct: 427 QDEISFNFIIRGFLQENQVQKAMEFLKRMREKNFSPNDSVTLMLVNLY 474


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 122/227 (53%), Gaps = 9/227 (3%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G LI   C + K + G++L  ++++ G V E+ A N L++    + NF R++EL+  MV 
Sbjct: 274 GRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVE 333

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL---KERGYV-----PDTVMYTTVIHGL 314
            +  P+  T+  +IN +CK R+  +A  V   +   KE G +     PD V+Y T+I GL
Sbjct: 334 MDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGL 393

Query: 315 CKMGWLGDARKMWFEM-IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
           CK+G   +   +   M   KG  P+  TYN +I G+C+   +E+ K L  EM  +G    
Sbjct: 394 CKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPN 453

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            VT NTL+ G+C  GR   A + F E  ++G+  D +TY  LI  +C
Sbjct: 454 VVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC 500



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 148/327 (45%), Gaps = 31/327 (9%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD----STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           PD+V  N L D L +    +  +  ++      G +P+  +    I   C++G IE+   
Sbjct: 381 PDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKE 440

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
            F ++ + GV  ++ T N+                          L+   C  G+VS   
Sbjct: 441 LFDEMNKEGVAPNVVTVNT--------------------------LVGGMCRTGRVSSAV 474

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
               +    G+  +   +  LI+ FC   NF +  EL + M+    +PD   Y  +I+G 
Sbjct: 475 NFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGF 534

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
            ++ +  +A  V  +LK+ G  PDTV Y T+I G C+        +M  EM   GL P+ 
Sbjct: 535 SQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDT 594

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
            TYN++I    +  +L+ A+++ ++M+  G   T  TY  +I   CL+G  +EA  +F++
Sbjct: 595 ITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKD 654

Query: 400 M-AQKGIFRDVITYNTLIQGYCKEGKI 425
           M A   +  + + YN LI   CK  K+
Sbjct: 655 MKAASKVPPNTVIYNILINSLCKNNKV 681



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/341 (26%), Positives = 148/341 (43%), Gaps = 27/341 (7%)

Query: 107 VSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
            +CN L   L     F    + ++        PN  +  + I  +C+   +++A     K
Sbjct: 306 AACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEK 365

Query: 164 L---KEMG-----VFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYL 205
           +   KE G     V   +  +N+ + G  K+ R      L            D I    L
Sbjct: 366 MSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCL 425

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  FC  G++ +G EL  ++ ++G+ P     N L+   C     GRVS  ++  V   R
Sbjct: 426 IDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCRT---GRVSSAVNFFVEAQR 482

Query: 266 ---APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
                D  TY  +IN  C      +A  +FN++ + G  PD ++Y T+I G  + G + D
Sbjct: 483 RGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMAD 542

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  +  E+   G+ P+   YN++I G+CR +       + KEM + G    T+TYNTLIA
Sbjct: 543 ASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIA 602

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               +G    A  +  +M + G+   V TY  +I  YC  G
Sbjct: 603 YASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNG 643



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 141/301 (46%), Gaps = 24/301 (7%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-- 202
           I  LC +      +  F+++ ++G        NS L G  +    + + +L   ++E   
Sbjct: 277 ITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDI 336

Query: 203 -------GYLIQAFCNDGKVSEGYELLRQVL---EDGLV-----PENTAFNKLISRFCEK 247
                  G LI   C   +V +  E+L ++    E G +     P+   +N LI   C+ 
Sbjct: 337 QPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCK- 395

Query: 248 KNFGRVSELLHTM----VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
              GR  E L  M      +  APD  TY  +I+G CK+ +  +   +F+++ + G  P+
Sbjct: 396 --VGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPN 453

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V   T++ G+C+ G +  A   + E   +G+  +  TY ++I+ +C ++N E+A  L  
Sbjct: 454 VVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFN 513

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           EML  G     + Y TLI+G    GR  +A  +  E+ + GI  D + YNTLI G+C+  
Sbjct: 514 EMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTN 573

Query: 424 K 424
           K
Sbjct: 574 K 574



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 126/258 (48%), Gaps = 18/258 (6%)

Query: 188 RTDLVWKLYHDLIESGYLIQ-AFCN--------DGKVSEGYELLRQVLEDGLVPENTAFN 238
           +T+  W L+ ++I+ G +++ A CN        +G  +   EL+ +++E  + P    F 
Sbjct: 285 KTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFG 344

Query: 239 KLISRFCEKKNFGRVSELLHTM--------VARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
            LI+  C+ +      E+L  M        ++ +  PD   Y  +I+GLCK  ++ E   
Sbjct: 345 ILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLG 404

Query: 291 VFNDLK-ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           +   ++ ++G  PDT+ Y  +I G CK G +   ++++ EM  +G+ PN  T N+++ G 
Sbjct: 405 LMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGM 464

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           CR   +  A     E   +G     VTY  LI   C     ++A  LF EM + G   D 
Sbjct: 465 CRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDA 524

Query: 410 ITYNTLIQGYCKEGKIVN 427
           I Y TLI G+ + G++ +
Sbjct: 525 IVYYTLISGFSQAGRMAD 542



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/347 (23%), Positives = 153/347 (44%), Gaps = 13/347 (3%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCL 148
             + + S  G +PD ++ N L D   +A      K   D ++  G +PN  ++   +  +
Sbjct: 405 LMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGM 464

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C +G +  A   F + +  G+ G   T+ + +     ++  +   +L++++++SG     
Sbjct: 465 CRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDA 524

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                LI  F   G++++   +L ++ + G+ P+   +N LI  FC    F RV E+L  
Sbjct: 525 IVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVFEMLKE 584

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           M      PD  TY  +I    K+     A +V   + + G VP    Y  VI+  C  G 
Sbjct: 585 MEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINAYCLNGN 644

Query: 320 LGDARKMWFEM-IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
             +A +++ +M     + PN   YN +I+  C+ + ++ A  L ++M   G    T TYN
Sbjct: 645 GNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTPNTTTYN 704

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +  GL      ++ +   + M +     D IT   L +     G+I
Sbjct: 705 AIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEI 751



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 50/166 (30%), Positives = 84/166 (50%), Gaps = 9/166 (5%)

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
           +F    +I  LC++RK    + +F ++ + G V ++    +++ GL + G      ++  
Sbjct: 270 SFWMGRLITRLCRNRKTNRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELME 329

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM--------LDKGYGETTVTYNTL 380
           +M+   + PN  T+  +I+  C+   +++A  + ++M        +        V YNTL
Sbjct: 330 KMVEMDIQPNVVTFGILINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTL 389

Query: 381 IAGLCLHGRTDEAYHLFEEM-AQKGIFRDVITYNTLIQGYCKEGKI 425
           I GLC  GR  E   L E M +QKG   D ITYN LI G+CK G+I
Sbjct: 390 IDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEI 435



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/238 (20%), Positives = 87/238 (36%), Gaps = 13/238 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SPD +    L     +A     A   +  L   G  P+       I   C +      
Sbjct: 519 GCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRV 578

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL---------IQA 208
           F    +++E G+     T+N+ +    K        K+   +I++G +         I A
Sbjct: 579 FEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVATYGAVINA 638

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTA-FNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           +C +G  +E  E+ + +     VP NT  +N LI+  C+         L+  M      P
Sbjct: 639 YCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMEDMKIWGVTP 698

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
           +  TY  +  GL   +   + +   + + E    PD +    +   L  +G +   +K
Sbjct: 699 NTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGEIERLKK 756


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 148/292 (50%), Gaps = 9/292 (3%)

Query: 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204
           I    ESG + +A   +  +KE        T    L   +K+    LVW  Y + +E GY
Sbjct: 73  ITAYLESGFLRDAIECYRLIKEHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGY 132

Query: 205 ---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE 255
                    L+ +F  +G++     +   + +  L P   +FN L++ + +  +      
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 256 LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315
           L + M A     D +TY  +INGLCK+ K  +A  +F+++ + G VP+ V +TT+I G C
Sbjct: 193 LKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375
           K   +  A +++ +M+ + L P+  TYN++I+G C+  +L++A+ L  EM  KG     +
Sbjct: 253 KNRRVDVAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKI 312

Query: 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           TY TLI G C  G  + A+   + M ++ I  D + Y  LI G C+EG+ V+
Sbjct: 313 TYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVD 364



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 155/335 (46%), Gaps = 13/335 (3%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---I 145
           +I  ++ +  H  F     +C  + + L++ + FK+   F + +     P SL  +   +
Sbjct: 85  AIECYRLIKEH-KFRVPFDTCRKVLEHLMKLKYFKLVWGFYEESLECGYPASLYFFNILM 143

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204
               + G I  A   F  + +  +  S+ ++N+ + G IK+   D  ++L + +  SG  
Sbjct: 144 HSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQ 203

Query: 205 --------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI   C   K+ +  EL  ++L++GLVP    F  LI   C+ +      E+
Sbjct: 204 SDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEI 263

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
              M++++ +PD  TY  +I GLCK     +A  + +++  +G  PD + YTT+I G CK
Sbjct: 264 YKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCK 323

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G L  A +    MI + +  ++  Y ++I G C+     +A+++ +EML  G      T
Sbjct: 324 EGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGT 383

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           Y  +I   C  G       L +EM + G    V+T
Sbjct: 384 YTMIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418


>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 170/354 (48%), Gaps = 20/354 (5%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF-----KVAMDF--LDSTGFSPNPNS 140
           +++RFF W      +    + C+V   SL+E   F     K+ + F  L   G     ++
Sbjct: 130 VAVRFFFWAGKQKKYVHK-IECHV---SLIELLTFSADLVKIRLVFFELKDRGLLMTESA 185

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVW---- 193
               I+     GL+EE    + ++KE G+  S+ T+N   + L+  + I+  + V+    
Sbjct: 186 ANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMD 245

Query: 194 --KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             K+  D +    +I+ +C  GK+ +  E  R +    + P+   +  LI     +++F 
Sbjct: 246 GGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFD 305

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               L   M  R       +Y  VI GLCK RK +EAY VF  + ++G   +  +YT +I
Sbjct: 306 TCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALI 365

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
               K G + +A +++  M ++G  P+  TY+ +++G C+   L++   L     +KG  
Sbjct: 366 DSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 425

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + Y +LI GL   GR ++A +LFEEM++KG  RD   YN +I    K GKI
Sbjct: 426 INAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKI 479



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L + N L + LV +   + A    + +D     P+  +  + I+  C++G +++A
Sbjct: 213 GIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKA 272

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  ++   V     T+ + +  C      D    LY ++ E G          +I  
Sbjct: 273 MEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGG 332

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K  E Y +   + + G       +  LI  + +  +      L   M      PD
Sbjct: 333 LCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPD 392

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCKS +  +   +F+  + +G   + + Y ++I GL K G + DA  ++ 
Sbjct: 393 AVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFE 452

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KG   + Y YN++I    +   +++A  L   M ++G  +T  T+  LI GL    
Sbjct: 453 EMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEH 512

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + +EA   +++M  KGI   V ++  L  G C  GK+ 
Sbjct: 513 KNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVA 550



 Score = 68.2 bits (165), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 14/242 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYI 145
           ++R F+ + +  GF PD V+ +VL + L ++      M   DF  + G + N       I
Sbjct: 377 AMRLFERMKNE-GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLI 435

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
             L ++G IE+A   F ++ E G       +N+ +    K  + D    L+  + E G  
Sbjct: 436 DGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCD 495

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI     + K  E  +   ++++ G+ P   +F  L    C      R  ++
Sbjct: 496 QTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKI 555

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  +      P+   +E++IN LCK+++  EA ++ + + +RG      + T +I+ L K
Sbjct: 556 LDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRK 614

Query: 317 MG 318
            G
Sbjct: 615 AG 616


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 169/338 (50%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM-DFLDSTGFS--PNPNSLELYIQCLCESGLIEEA 157
           G SP++V+   + D L++A   +  + +F + +G S  P   +  + I  LC++ ++ +A
Sbjct: 138 GCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDA 197

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++ + G      T+ + + G  K  + D   KL   ++  G          ++  
Sbjct: 198 CKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHG 257

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC    ++E  E++ Q+ E G  P    F  L+S +  K       ++L  M AR  APD
Sbjct: 258 FCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPD 317

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+ L  + +  EA  VF+ + E+G  PD + Y T+I    K+G +  A ++  
Sbjct: 318 VILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILE 377

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G+ P+ + YNS++ GY +++ +++A  ++  M+  G     VT+N L+ GL   G
Sbjct: 378 LMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDG 437

Query: 389 RTDEAYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKI 425
           +TD A+ LF+EM +K  +   +++Y  LI G  K G++
Sbjct: 438 KTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRV 475



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 152/334 (45%), Gaps = 12/334 (3%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           S D++S   +   L +++    A +    L + G SPN  +    I  L ++G IE+   
Sbjct: 105 SLDVISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLK 164

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFC 210
            F ++       +  T+   + G  K        K++  +++ G          LI  F 
Sbjct: 165 NFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFS 224

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
              K+ E  +LL  +L  G  P    +  ++  FC+        E++  M  R   P  F
Sbjct: 225 KASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLF 284

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
            +  +++      +  EAY+V  ++  RG  PD ++YT++I  L   G + +AR ++  M
Sbjct: 285 IFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSM 344

Query: 331 IHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390
           I KG  P+  TY ++I  + +I N+E A  + + M   G G     YN+L+ G     R 
Sbjct: 345 IEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERV 404

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           D+A+ +++ M   GI  + +T+N L+ G  K+GK
Sbjct: 405 DQAFGVYDRMVASGIKPNAVTFNVLMHGLFKDGK 438



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/347 (24%), Positives = 157/347 (45%), Gaps = 17/347 (4%)

Query: 91  RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCL 148
           +FF  +  + G  PD+++   L     +A   +V    L+     F P+       I   
Sbjct: 28  KFFNSMIDN-GCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKRFRPDVFLYTSVIHGY 86

Query: 149 CESGLIEEA-FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
           C++G ++   F A +    + V     ++ + + G     R D   +L+ +L  +G    
Sbjct: 87  CKAGDLDTGYFRAVTPKASLDVI----SYTTVIKGLADSKRIDEACELFEELKTAGCSPN 142

Query: 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I      G++ +G +   ++     VP  T +  +I   C+ +      ++  
Sbjct: 143 VVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFE 202

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            MV +   PD  TY  +I+G  K+ K  EA ++ + +  +G  P  V Y +++HG CK+ 
Sbjct: 203 QMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLD 262

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + +A+++  +M  +G  P  + + S++  Y      EEA ++  EM  +G     + Y 
Sbjct: 263 MINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYT 322

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +LI  L   GR  EA H+F+ M +KG   D +TY T+IQ + K G +
Sbjct: 323 SLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNV 369



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/249 (30%), Positives = 115/249 (46%), Gaps = 33/249 (13%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +I    +  K+ E Y+    ++++G  P+  AF  LI  FC+        +LL+  + R 
Sbjct: 13  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKLLNQALKRF 72

Query: 265 RAPDNFTYEEVINGLCKS-------------------------------RKRL-EAYRVF 292
           R PD F Y  VI+G CK+                                KR+ EA  +F
Sbjct: 73  R-PDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRIDEACELF 131

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
            +LK  G  P+ V YT VI GL K G + D  K + EM     +P   TY  +I G C+ 
Sbjct: 132 EELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVVIDGLCKA 191

Query: 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412
             L +A ++ ++M+ KG    T+TY TLI G     + DEA  L + M  KG     +TY
Sbjct: 192 QMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTY 251

Query: 413 NTLIQGYCK 421
            +++ G+CK
Sbjct: 252 GSIVHGFCK 260



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 139/286 (48%), Gaps = 10/286 (3%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------- 203
           G  EEA+   +++   G    +  + S +       R      ++  +IE G        
Sbjct: 297 GRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 356

Query: 204 -YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +IQ F   G V    E+L  + + G+ P+  A+N L+  + + +   +   +   MVA
Sbjct: 357 GTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVA 416

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT-VMYTTVIHGLCKMGWLG 321
               P+  T+  +++GL K  K   A+ +F ++ E+  VP T V YT +I GL K G + 
Sbjct: 417 SGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVS 476

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A   + EMI +G++P  +TY S+I+   +   + EAK+L ++M+  G       Y+ LI
Sbjct: 477 EAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALI 536

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            GL      D A+ +F+EM ++G   + +TY  L +G+   G+ ++
Sbjct: 537 TGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGRALD 582



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 10/162 (6%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   +Y  VI+GL    K  EAY+ FN + + G  PD + +TT+IHG CK G      K+
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA---KRLHKEMLDKGYGETTVTYNTLIAG 383
             + + +   P+ + Y S+IHGYC+  +L+         K  LD       ++Y T+I G
Sbjct: 65  LNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLD------VISYTTVIKG 117

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L    R DEA  LFEE+   G   +V+ Y  +I G  K G+I
Sbjct: 118 LADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRI 159



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/229 (26%), Positives = 99/229 (43%), Gaps = 33/229 (14%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G  P   ++N +IS            +  ++M+     PD   +  +I+G CK+ +    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMG--------------------------WLGD 322
           +++ N   +R + PD  +YT+VIHG CK G                           L D
Sbjct: 62  HKLLNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLAD 120

Query: 323 ARK------MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
           +++      ++ E+   G  PN   Y ++I G  +   +E+  +  +EM       T  T
Sbjct: 121 SKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTT 180

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y  +I GLC      +A  +FE+M QKG   D ITY TLI G+ K  K+
Sbjct: 181 YTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKM 229



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/191 (21%), Positives = 79/191 (41%), Gaps = 30/191 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156
           G  P+ V+ NVL   L +     RAF +  + L+     P   S  + I  L ++G + E
Sbjct: 418 GIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSE 477

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216
           AF  F ++ + G+     T+ S                          LI +    G++ 
Sbjct: 478 AFLQFQEMIDRGIIPECHTYTS--------------------------LIYSLAKAGRIP 511

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E  +L+  +++ G+ P+  A++ LI+   +        ++   M+ R  AP+  TY+ + 
Sbjct: 512 EAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLR 571

Query: 277 NGLCKSRKRLE 287
            G   + + L+
Sbjct: 572 RGFRAAGRALD 582


>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/326 (27%), Positives = 160/326 (49%), Gaps = 15/326 (4%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSP 136
           L Q     L+   F+     +   P++VSCN+L  +L +     VA+  LD     G  P
Sbjct: 160 LVQNKRHRLAHSVFKSSTEKFRLVPNVVSCNILLKALCKRNEVDVAVRVLDEMSLMGLVP 219

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
           N  S    +      G +E A   F ++ + G    + ++   + G  ++ +     ++ 
Sbjct: 220 NVVSYSTVLGGFVFKGDMESAMRVFGEILDKGWMPDVTSYTVLMSGFCRLGKLVDAIRMM 279

Query: 197 HDLIES----------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
            DL+E           G +I+A+C   K  E   LL  ++E GLVP +    K++   CE
Sbjct: 280 -DLMEENRVQPSEVTYGVMIEAYCKGRKPGEAVNLLEDMVEKGLVPSSVLCCKVVDLLCE 338

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
           + +  R  E+   +V +           +++ LCK  K +EA  V ++L E+G V   + 
Sbjct: 339 EGSVERACEVWRGVVRKGWRVGGAVVSTIVHWLCKEGKVVEARGVLDEL-EKGEVASLMT 397

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y T+I G+C+ G L +A ++W EM+ KG +PN +TYN ++ G+C++ +++EA R+ +EM+
Sbjct: 398 YNTLIAGMCERGQLCEAGRLWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEAIRVLEEMV 457

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDE 392
           + G      T++ L+ G+ L G   E
Sbjct: 458 ESGCLPNKSTFSILVDGISLSGGKKE 483



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/322 (26%), Positives = 153/322 (47%), Gaps = 31/322 (9%)

Query: 108 SCNVLFDSLVEARAFKVAMDFLDSTG----FSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           S N L ++LV+ +  ++A     S+       PN  S  + ++ LC+   ++ A     +
Sbjct: 152 SLNALLNALVQNKRHRLAHSVFKSSTEKFRLVPNVVSCNILLKALCKRNEVDVAVRVLDE 211

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLR 223
           +  MG+  ++ ++++ L G                          F   G +     +  
Sbjct: 212 MSLMGLVPNVVSYSTVLGG--------------------------FVFKGDMESAMRVFG 245

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
           ++L+ G +P+ T++  L+S FC          ++  M      P   TY  +I   CK R
Sbjct: 246 EILDKGWMPDVTSYTVLMSGFCRLGKLVDAIRMMDLMEENRVQPSEVTYGVMIEAYCKGR 305

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           K  EA  +  D+ E+G VP +V+   V+  LC+ G +  A ++W  ++ KG        +
Sbjct: 306 KPGEAVNLLEDMVEKGLVPSSVLCCKVVDLLCEEGSVERACEVWRGVVRKGWRVGGAVVS 365

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           +++H  C+   + EA+ +  E L+KG   + +TYNTLIAG+C  G+  EA  L++EM +K
Sbjct: 366 TIVHWLCKEGKVVEARGVLDE-LEKGEVASLMTYNTLIAGMCERGQLCEAGRLWDEMVEK 424

Query: 404 GIFRDVITYNTLIQGYCKEGKI 425
           G   +  TYN L++G+CK G +
Sbjct: 425 GRVPNAFTYNVLMKGFCKVGDV 446



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 51/93 (54%)

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L+PN  + N ++   C+ + ++ A R+  EM   G     V+Y+T++ G    G  + A 
Sbjct: 182 LVPNVVSCNILLKALCKRNEVDVAVRVLDEMSLMGLVPNVVSYSTVLGGFVFKGDMESAM 241

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            +F E+  KG   DV +Y  L+ G+C+ GK+V+
Sbjct: 242 RVFGEILDKGWMPDVTSYTVLMSGFCRLGKLVD 274


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/321 (26%), Positives = 148/321 (46%), Gaps = 38/321 (11%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  S    ++ LC +G I++A    +++    +   + T+N  +    K  R     + 
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 67

Query: 196 YH-----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +      D++    L+   C +G+V++   L   +   G+ P +  +  LI  FC+   F
Sbjct: 68  FETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQF 127

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
                LL  M +R  +P  ++Y  +INGLCK+RK  +AY++F ++K  G  PD V Y T+
Sbjct: 128 ETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTL 187

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           IHGLC    L +A+ +   M+     P++ T+ ++I G C  D ++EA  L + M  +G 
Sbjct: 188 IHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGC 247

Query: 371 GETTVTYNTLIAGLCLH------------------------------GRT---DEAYHLF 397
               VT+  L++ LC+                               GR    D A  L 
Sbjct: 248 APDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLL 307

Query: 398 EEMAQKGIFRDVITYNTLIQG 418
           ++MA++G+  +V+TY    +G
Sbjct: 308 QKMARRGVAPNVVTYTAFFKG 328



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 164/367 (44%), Gaps = 49/367 (13%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           PD+ + NV+ D+L +AR    A++F ++    P+  +    +  LC++G + +A   F  
Sbjct: 43  PDVFTYNVVIDTLCKARRISRAIEFFETMP-EPDVVTYNTLLGGLCKNGRVAQACSLFGS 101

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGK 214
           ++  G+  S  T+ + +    K+ + +  + L   +              +I   C + K
Sbjct: 102 MEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRK 161

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V + Y+L  ++   G  P+   +N LI   C K+      +LL  MV  +  PD  T+  
Sbjct: 162 VDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTA 221

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC------------------- 315
           +I GLC + +  EA+ +F  + ++G  PD V +T ++  LC                   
Sbjct: 222 LIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACP 281

Query: 316 --------------KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
                         +      A ++  +M  +G+ PN  TY +   G   + + +E  R 
Sbjct: 282 EAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKG---LGDWKEGMRA 338

Query: 362 HKE---MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
           ++E   ML++G     V YN L+ G C   R D A  +   M Q G+  +++TYNTL+  
Sbjct: 339 YREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGH 398

Query: 419 YCKEGKI 425
           +C++GK+
Sbjct: 399 HCRKGKV 405



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 39/257 (15%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
           YL++A C  GK+ +    + ++  + LVP+   +N +I   C+ +   R  E   TM   
Sbjct: 15  YLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETM--- 71

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT-------------- 309
              PD  TY  ++ GLCK+ +  +A  +F  ++  G  P  V YTT              
Sbjct: 72  -PEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETA 130

Query: 310 ---------------------VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                                +I+GLCK   +  A +++ EM   G  P+  TYN++IHG
Sbjct: 131 YGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHG 190

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C    L EAK L   M++  +    +T+  LI GLC   R  EA+ LF+ MA++G   D
Sbjct: 191 LCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPD 250

Query: 409 VITYNTLIQGYCKEGKI 425
           ++T+  L+   C   K+
Sbjct: 251 LVTHTVLVSKLCIRRKL 267



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 145/349 (41%), Gaps = 45/349 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P  V+   L D   +   F+ A   +  + S   SP   S    I  LC++  +++A
Sbjct: 106 GITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQA 165

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKI---DRTDLVWKLYH-----DLIESGYLIQA 208
           +  F ++K  G      T+N+ + G C+K    +  DL+  +       D I    LI+ 
Sbjct: 166 YQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEG 225

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC----------------------- 245
            C   ++ E + L + + + G  P+      L+S+ C                       
Sbjct: 226 LCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALSVVRNYPACPEAVI 285

Query: 246 ----------EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
                      ++ F R + LL  M  R  AP+  TY     GL   ++ + AYR F  +
Sbjct: 286 LYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDWKEGMRAYREFRRM 345

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
            E+G  PD V Y  ++ G CK   L  A KM   M   GL PN  TYN+++  +CR   +
Sbjct: 346 LEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKV 405

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           E    L   M+ +G      T++TL+AGL   G+ D AY        +G
Sbjct: 406 EAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQVDAAYSFLNLAMSQG 454



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/413 (21%), Positives = 165/413 (39%), Gaps = 55/413 (13%)

Query: 58  EQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV 117
            + L+ D+ ++N        + L +   +  +I FF+ +       PD+V+ N L   L 
Sbjct: 38  REKLVPDVFTYNV-----VIDTLCKARRISRAIEFFETMPE-----PDVVTYNTLLGGLC 87

Query: 118 E-ARAFKVAMDF--LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174
           +  R  +    F  ++  G +P+  +    I   C+    E A+     +       ++ 
Sbjct: 88  KNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVY 147

Query: 175 TWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQV 225
           ++ S + G  K  + D  ++L+ ++  +G          LI   C   ++ E  +LL  +
Sbjct: 148 SYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVM 207

Query: 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           +E+   P+   F  LI   C          L   M  +  APD  T+  +++ LC  RK 
Sbjct: 208 VENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKL 267

Query: 286 L---------------------------------EAYRVFNDLKERGYVPDTVMYTTVIH 312
                                              A R+   +  RG  P+ V YT    
Sbjct: 268 RPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFK 327

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GL        A + +  M+ +G+ P+   YN ++ G+C+ + L+ A+++ + M   G   
Sbjct: 328 GLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPP 387

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             VTYNTL+   C  G+ +    L   M  +G   DV T++TL+ G  + G++
Sbjct: 388 NIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLVAGLFRVGQV 440



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 4/91 (4%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN  +Y  ++   CR   +++A     EM  +       TYN +I  LC   R   A   
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEF 67

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           FE M +     DV+TYNTL+ G CK G++  
Sbjct: 68  FETMPEP----DVVTYNTLLGGLCKNGRVAQ 94


>gi|317106735|dbj|BAJ53231.1| JHL06P13.11 [Jatropha curcas]
          Length = 826

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 159/338 (47%), Gaps = 14/338 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P++V  N L D   +    + A      L   GF P   +    I   C+ G  E  
Sbjct: 232 GCVPNIVFYNTLIDGYCKNGDIERANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAV 291

Query: 158 FCAFSKLKEMGVFGSIKTWNSAL-----LGCIKIDRTDLV-WKLYH----DLIESGYLIQ 207
                ++KE G+  S++ +N  +      GC +I+  D V W +      D+     LI 
Sbjct: 292 DKLLVEMKERGLAVSLQIFNGIIDARFKHGC-EIEAADAVRWMIESGCEPDMATYNTLIN 350

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             C+ GKV E  ELL   +  GL P   ++  LI  F +   + R SELL  M  R    
Sbjct: 351 GSCSKGKVREAEELLEHAIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTL 410

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           D   Y  +++GL  + +   A  V + + ERG +PD  +Y  ++ GLCK G    A+++ 
Sbjct: 411 DLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLL 470

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            EM+ + + P+ +   +++ G+ R  NL+EAK+L +  +++G   + V  N +I G C +
Sbjct: 471 VEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKY 530

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G  ++A   F+ M       D  TY+T+I GY K+  +
Sbjct: 531 GMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDL 568



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 158/331 (47%), Gaps = 18/331 (5%)

Query: 112 LFDSLVEARAFK--------VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
           +F+ +++AR FK         A+ ++  +G  P+  +    I   C  G + EA      
Sbjct: 309 IFNGIIDAR-FKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEH 367

Query: 164 LKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYH-----DLIESGYLIQAFCNDGK 214
               G+F +  ++   +    K    +  ++L+ ++       DLI  G L+      G+
Sbjct: 368 AIRRGLFPNKFSYTPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGE 427

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V     +  +++E G++P+   +N L+S  C+K  F    +LL  M+ +N  PD F    
Sbjct: 428 VDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRFPAAKQLLVEMLDQNVTPDAFVNAT 487

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +++G  +     EA ++F    ERG     V    +I G CK G + DA   +  M +  
Sbjct: 488 LVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAMIKGYCKYGMMNDALLCFKRMFNGV 547

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
             P+E+TY+++I GY + ++L  A R+   ML K      VT+ +LI G C +G  + A 
Sbjct: 548 HSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTCKPNVVTFTSLINGFCRNGDLNRAE 607

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +FEEM   G   +V+TY  LI  +CKEGK+
Sbjct: 608 KVFEEMRSFGFEPNVVTYTILIGYFCKEGKL 638



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 179/442 (40%), Gaps = 70/442 (15%)

Query: 43  IAKQVCKITRTKPRWEQTL----------LSDIPSFNFNDPLFFREFLKQQNNVLLSIRF 92
           + K   +I +T+  W++ L          +S+I  F F+          Q ++  L + F
Sbjct: 31  LVKDTIRIIKTETLWQEALEIRFSETDTRVSEIAHFVFD----------QIHDPRLGLNF 80

Query: 93  FQWLHSHYGFSPDL--VSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQC 147
           F+W       S  L    C+ L   L   R FK   + L+   S    P   +L   I  
Sbjct: 81  FEWASKQSTLSNSLDGFVCSSLLKLLARFRVFKEIENLLETMKSKELIPTCEALSFVISA 140

Query: 148 LCESGLIEEAFCAFSKLKEM-GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--- 203
              SGL++EA   ++ + ++      +   NS L   +   + ++  K+Y ++++     
Sbjct: 141 YAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVDRNGDV 200

Query: 204 ------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                  + +  C +GKV EG  L+ +    G VP    +N LI  +C+  +  R + L 
Sbjct: 201 DNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIERANLLF 260

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             +  +   P   TY  +IN  CK  K     ++  ++KERG      ++  +I    K 
Sbjct: 261 KELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIIDARFKH 320

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK-------------- 363
           G   +A      MI  G  P+  TYN++I+G C    + EA+ L +              
Sbjct: 321 GCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKVREAEELLEHAIRRGLFPNKFSY 380

Query: 364 ---------------------EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
                                EM ++G+    + Y  L+ GL + G  D A  + ++M +
Sbjct: 381 TPLIHAFSKNGEYVRASELLIEMSERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMME 440

Query: 403 KGIFRDVITYNTLIQGYCKEGK 424
           +GI  D   YN L+ G CK+G+
Sbjct: 441 RGILPDANIYNVLMSGLCKKGR 462



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 106/223 (47%), Gaps = 1/223 (0%)

Query: 204 YLIQAFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           ++I A+   G V E  EL   V++    VP+  A N L++            ++   MV 
Sbjct: 136 FVISAYAGSGLVKEALELYNTVIDVHNCVPDVFACNSLLNLLVHHGKVEIARKVYDEMVD 195

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           RN   DN+T   V  GLCK  K  E   +      +G VP+ V Y T+I G CK G +  
Sbjct: 196 RNGDVDNYTVCIVTKGLCKEGKVEEGRHLIEKRWGKGCVPNIVFYNTLIDGYCKNGDIER 255

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A  ++ E+  KG LP   TY +MI+ +C+    E   +L  EM ++G   +   +N +I 
Sbjct: 256 ANLLFKELKVKGFLPTVKTYGAMINAFCKKGKFEAVDKLLVEMKERGLAVSLQIFNGIID 315

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               HG   EA      M + G   D+ TYNTLI G C +GK+
Sbjct: 316 ARFKHGCEIEAADAVRWMIESGCEPDMATYNTLINGSCSKGKV 358



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 79/351 (22%), Positives = 153/351 (43%), Gaps = 23/351 (6%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLI 154
           S  G + DL++   L   LV A    VA+   D     G  P+ N   + +  LC+ G  
Sbjct: 404 SERGHTLDLIAYGALVHGLVVAGEVDVALTVRDKMMERGILPDANIYNVLMSGLCKKGRF 463

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------L 205
             A     ++ +  V        + + G I+    D   KL+   IE G          +
Sbjct: 464 PAAKQLLVEMLDQNVTPDAFVNATLVDGFIRHGNLDEAKKLFQLTIERGIDTSVVECNAM 523

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I+ +C  G +++     +++      P+   ++ +I  + ++ +      +   M+ +  
Sbjct: 524 IKGYCKYGMMNDALLCFKRMFNGVHSPDEFTYSTIIDGYVKQNDLRGALRMFGLMLKKTC 583

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  T+  +ING C++     A +VF +++  G+ P+ V YT +I   CK G L  A  
Sbjct: 584 KPNVVTFTSLINGFCRNGDLNRAEKVFEEMRSFGFEPNVVTYTILIGYFCKEGKLTKACF 643

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE-EAKRLHKE----------MLDKGYGETT 374
            + +M+    +PN+ T+N +++G    + +   +KR + +          M+  G+    
Sbjct: 644 FFEQMLINKCIPNDATFNYLVNGLTNNNGIAISSKRSNSQPNLTLEFFGMMISDGWDWRI 703

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             YN+++  LC H     A  L ++M  KG   D +++  L+ G C EG++
Sbjct: 704 AAYNSILLCLCQHKMVKPALQLHDKMMSKGFPPDPVSFIALLHGLCLEGRL 754


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 88/311 (28%), Positives = 143/311 (45%), Gaps = 15/311 (4%)

Query: 132 TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191
            G  P   +    I   C    +E A     K+   GV   + T+N+ + G  K  R   
Sbjct: 146 AGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQE 205

Query: 192 VWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
             +L   +  SG           +   C  GKV + +++L Q+ +    P    +N ++ 
Sbjct: 206 AEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILD 265

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFT-YEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
             C+        E++  M + +    N   Y  V++GLCK  +  EA  V   +   G  
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD V Y+++++GLCK G + +A +   EM  +G  PN  TY S++HG C    L EA+R+
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 362 HKEMLDKGYGE-----TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
            +EM   G G      +  TYN LI GLC  GR D+A   F+ M  +G   D ++Y+T++
Sbjct: 386 VEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIV 445

Query: 417 QGYCKEGKIVN 427
           +G  + G+ + 
Sbjct: 446 EGLARSGRALQ 456



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 159/341 (46%), Gaps = 18/341 (5%)

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFC 159
           +PD+V+ + L     +A   + + + L    S G  P+       +  LC+S  + EA  
Sbjct: 79  TPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEALE 138

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
              ++   G   ++ T+N+ + GC +    ++   L   +  SG          L+   C
Sbjct: 139 LLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLC 198

Query: 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270
             G++ E  +LL ++   G  P+  A++  +   C+        ++L  M   +  P+  
Sbjct: 199 KAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVV 258

Query: 271 TYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           TY  +++GLCKS K   A  +   +    G   + V Y+TV+ GLCK+G   +AR +   
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M   G  P+  TY+S+++G C+   +EEA    +EM  +G     VTY +L+ GLC  GR
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGR 378

Query: 390 TDEAYHLFEEMAQKGIFR-----DVITYNTLIQGYCKEGKI 425
             EA  + EEM+  G         V TYN LI G CK G+I
Sbjct: 379 LAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRI 419



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 2/225 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L+  F   G+  +   LL  +    + P   ++N L+   C+ + +    EL+  M++R 
Sbjct: 16  LVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRG 75

Query: 265 --RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
               PD  TY  +++G CK+ K  E+  +  ++  RG  PD +MYT V+  LCK   LG+
Sbjct: 76  GRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGE 135

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A ++  EMI  G  P   T+N++I G CR  NLE A  L ++M   G     VTYNTL+ 
Sbjct: 136 ALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMD 195

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           GLC  GR  EA  L E M   G   DV+ Y++ + G CK GK+++
Sbjct: 196 GLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLD 240



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 147/308 (47%), Gaps = 12/308 (3%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           +D TG  PN  +    +    + G   +       +    +  ++ ++N  L G  K++R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 189 TDLVWKLYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
                +L  D+I  G            L+  +C  GKV E  ELL++V+  GL P+   +
Sbjct: 61  WHEAEELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMY 120

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
            K+++  C+    G   ELL  M+     P   T+  +I+G C+ +    A  +   +  
Sbjct: 121 TKVVASLCKSARLGEALELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAA 180

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
            G   D V Y T++ GLCK G L +A ++   M   G  P+   Y+S ++G C+   + +
Sbjct: 181 SGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLD 240

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLI 416
           A ++ ++M D  +    VTYNT++ GLC  G+ D A  + E+MA   G   +V+ Y+T++
Sbjct: 241 AHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVV 300

Query: 417 QGYCKEGK 424
            G CK G+
Sbjct: 301 DGLCKLGR 308



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 151/331 (45%), Gaps = 42/331 (12%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
           ++ N+ ++    Q + +  G   D+V+ N L D L +A   + A   L+   ++G +P+ 
Sbjct: 164 REKNLEMADSLLQKMAAS-GVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDV 222

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +   ++  LC+SG + +A     ++++     ++ T+N+ L G                
Sbjct: 223 VAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDG---------------- 266

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRFCEKKNFGRVSELL 257
                      C  GK+    E++ Q+   DG       ++ ++   C+    GR  E  
Sbjct: 267 ----------LCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCK---LGRTQEAR 313

Query: 258 HTMVARNRA---PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
             M A  RA   PD  TY  ++NGLCK+ K  EA     ++   G  P+ V Y +++HGL
Sbjct: 314 SVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGL 373

Query: 315 CKMGWLGDARKMWFEMIHKGLL-----PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           C  G L +A +M  EM   G       P+  TYN++I G C+   +++A +  + M  +G
Sbjct: 374 CSCGRLAEAERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQG 433

Query: 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
                V+Y+T++ GL   GR  +A  +  E+
Sbjct: 434 CDPDGVSYSTIVEGLARSGRALQAEMILSEV 464


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 153/307 (49%), Gaps = 15/307 (4%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190
           S+G  P+  +    I  LC+ G ++EA   F+K+ +  +     T+ S +LG  +  + D
Sbjct: 190 SSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLD 249

Query: 191 LVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
             ++++  +++ G          LI   CN+G++ E  ++L ++ E G+ P    +   I
Sbjct: 250 KAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPI 309

Query: 242 SRFCEKKNFGRVSE---LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298
           S  C+    GRV +   L+ +M  +  +P   TY  +I+GL ++ K   A  +++ + + 
Sbjct: 310 SSLCD---IGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKE 366

Query: 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358
           G VP+TV Y  +I+ LC  G  G A K++  M   G L N  TYN +I G   +D++E+A
Sbjct: 367 GLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKA 426

Query: 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418
             +  +ML  G   T VTYNTLI      G  + A      M +     D  TY  LI G
Sbjct: 427 MVVFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISG 486

Query: 419 YCKEGKI 425
           +CK GK+
Sbjct: 487 FCKGGKL 493



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/372 (25%), Positives = 164/372 (44%), Gaps = 47/372 (12%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEA 157
           G +P+ V+ + L + L        AMD L+     G  P   +  + I  LC+ G +++A
Sbjct: 262 GCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDA 321

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 + + G   S++T+ + + G  +  + +L   +YH +++ G          LI  
Sbjct: 322 INLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINE 381

Query: 209 FCNDGK-----------------------------------VSEGYELLRQVLEDGLVPE 233
            C +G+                                   + +   +  ++L+DG  P 
Sbjct: 382 LCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPT 441

Query: 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293
              +N LI    ++      +  L+ M   N  PD  TY E+I+G CK  K   A   F 
Sbjct: 442 VVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFY 501

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++ + G  P+   YT +I G CK G +  A  ++  M   G   +  TYN++I G  + +
Sbjct: 502 EMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGN 561

Query: 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYN 413
              EA++   +M ++G    T+TY +LI GLC +  T+ A+ +F EM +K    +  TY 
Sbjct: 562 RFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYT 621

Query: 414 TLIQGYCKEGKI 425
           +LI G C+EGK+
Sbjct: 622 SLIYGLCQEGKV 633



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 146/353 (41%), Gaps = 17/353 (4%)

Query: 81  KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPN 137
           K Q  VL+  + FQ     +   PD  +   L       R    A +  D     G +PN
Sbjct: 212 KVQEAVLVFNKIFQ-----FDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPN 266

Query: 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197
             +    I  LC  G I EA     ++ E G+  ++ T+   +     I R D    L  
Sbjct: 267 SVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCDIGRVDDAINLVR 326

Query: 198 DLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248
            + + G          +I      GK+     +  ++L++GLVP    +N LI+  C + 
Sbjct: 327 SMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEG 386

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
            FG   ++   M       +  TY ++I GL       +A  VFN + + G  P  V Y 
Sbjct: 387 RFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYN 446

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           T+I    K G+L +A +  + M      P+E TY  +I G+C+   L+ A     EML  
Sbjct: 447 TLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKC 506

Query: 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           G      TY  +I G C  G+ D A  LFE M + G    + TYN +I G  K
Sbjct: 507 GISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSK 559



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 68/210 (32%), Positives = 113/210 (53%)

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           V+    +  Q+   G+ P    FN +I+  C+K        + + +   +  PD FTY  
Sbjct: 178 VTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTS 237

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           +I G C++RK  +A+ VF+ + + G  P++V Y+T+I+GLC  G +G+A  M  EM  KG
Sbjct: 238 LILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKG 297

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           + P  YTY   I   C I  +++A  L + M  KG   +  TY  +I+GL   G+ + A 
Sbjct: 298 IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAI 357

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            ++ +M ++G+  + +TYN LI   C EG+
Sbjct: 358 GMYHKMLKEGLVPNTVTYNALINELCTEGR 387



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 145/336 (43%), Gaps = 16/336 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP + +   +   L  A   ++A+     +   G  PN  +    I  LC  G    A
Sbjct: 332 GCSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIA 391

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F  ++  G   + +T+N  + G   +D  +    +++ +++ G          LI  
Sbjct: 392 LKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTYNTLIVE 451

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G ++     L  + E    P+   + +LIS FC+       +   + M+    +P+
Sbjct: 452 NLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPN 511

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +TY  +I+G CK  K   A  +F  ++E G       Y  +I GL K     +A K   
Sbjct: 512 QWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCA 571

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +M  +GL PN  TY S+I+G C+      A ++  EM  K       TY +LI GLC  G
Sbjct: 572 KMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEG 631

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           + D A    E + + G    + TY+TL+ G C+EG+
Sbjct: 632 KVDAA----ERLTENGCEPTIDTYSTLVSGLCREGR 663



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 129/291 (44%), Gaps = 30/291 (10%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192
           G SPN  +    I   C+ G I+ A   F +++E G   SI+T+N+ + G  K +R    
Sbjct: 507 GISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNR---- 562

Query: 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
                                  SE  +   ++ E GL P    +  LI+  C+      
Sbjct: 563 ----------------------FSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNL 600

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             ++ H M  +N  P+  TY  +I GLC+  K   A R    L E G  P    Y+T++ 
Sbjct: 601 AFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAER----LTENGCEPTIDTYSTLVS 656

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
           GLC+ G   +A ++   M  KGL P+   Y S++  +C+   ++ A  +   M  KG+  
Sbjct: 657 GLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQP 716

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               Y  LI  LC   R +EA ++F+ + +K    D+I +  L+ G  +EG
Sbjct: 717 HLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEG 767



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 4/210 (1%)

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKN-FGRVSELLHTMVARNRAPDNFT---YEEV 275
            +L ++++D ++        L+ + C  ++   RV++ LH + + +     FT   +  +
Sbjct: 109 SMLNRLVKDKILAPADHVRILMIKACRNEDELKRVTDFLHGISSSDSGLFGFTLYSFNTL 168

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           +  L K      A  V+  +   G  P  + + T+I+ LCK G + +A  ++ ++    L
Sbjct: 169 LLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDL 228

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P+ +TY S+I G+CR   L++A  +   M+  G    +VTY+TLI GLC  GR  EA  
Sbjct: 229 CPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMD 288

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + EEM +KGI   V TY   I   C  G++
Sbjct: 289 MLEEMTEKGIEPTVYTYTVPISSLCDIGRV 318



 Score = 43.5 bits (101), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 9/182 (4%)

Query: 125 AMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184
           A + L   G  P  ++    +  LC  G   EA      +KE G+  S++ + S L+   
Sbjct: 635 AAERLTENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHC 694

Query: 185 KIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENT 235
           K  + D   ++++ +   G+         LI A C   +  E   + + +L+     +  
Sbjct: 695 KSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLI 754

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
            +  L+    ++ +     + L+ M +RN  P   TY  +   L K  K +   ++ N L
Sbjct: 755 VWTVLVDGLLQEGDSDLCMKFLYLMESRNCTPSLHTYIILARELSKVGKSIGTDQIGNRL 814

Query: 296 KE 297
           +E
Sbjct: 815 RE 816


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 154/329 (46%), Gaps = 14/329 (4%)

Query: 110 NVLFDSLVEARAFKVA----MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165
           N+  DSL ++     A     +  D  G   N  S  + I   C++  I+EA   F ++K
Sbjct: 70  NITIDSLCKSDMIDKAESWFQELKDFRGLV-NTVSYNILINAFCKTKRIDEAIQLFGEMK 128

Query: 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVS 216
             G   S  T+N+ + G  +++R     + Y  L+ SG          L+  FC   +V 
Sbjct: 129 APGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVP 188

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E  ELL +++  G V  +  +N +I    +K          + M      P   T+  +I
Sbjct: 189 EAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLI 248

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +GLCK+ +   A  +F    E G  P  V+ + ++ G CK G + +A +++  M ++G  
Sbjct: 249 DGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCT 308

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PN+ + N +I+G C+   L +A+ + +E++ +      VTY+T + GLC   R D+A  +
Sbjct: 309 PNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQV 368

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              +  KG   DV+ Y  LI G C  G++
Sbjct: 369 LCMLVDKGGTPDVVMYTALISGLCSLGRL 397



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 163/347 (46%), Gaps = 14/347 (4%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCL 148
           +FQ L    G   + VS N+L ++  + +    A+     + + G +P+ ++    I  L
Sbjct: 88  WFQELKDFRGLV-NTVSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGL 146

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C    + EA   + +L   G   S  T+N  + G  K DR     +L ++L+  G     
Sbjct: 147 CRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTS 206

Query: 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
                +I      GK+ E      ++ +DG+ P+   F  LI   C+     R  E+  +
Sbjct: 207 APYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFS 266

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
            +    +P       +++G CK     EA+R+F  +  RG  P+ V    +I+GLCK   
Sbjct: 267 YLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKR 326

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  AR+++ E++ +   P+  TY++ + G CR   +++A+++   ++DKG     V Y  
Sbjct: 327 LSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTA 386

Query: 380 LIAGLCLHGRTDEAYHLFE-EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LI+GLC  GR DEA  +FE +M   G   +  T N L+ G+   G++
Sbjct: 387 LISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRL 433



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/285 (25%), Positives = 127/285 (44%), Gaps = 26/285 (9%)

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200
           + + I  LC+S +I++A   F +LK+     +  ++N                       
Sbjct: 69  VNITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYN----------------------- 105

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI AFC   ++ E  +L  ++   G  P  + +N LI   C  +  G   +    +
Sbjct: 106 ---ILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERL 162

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320
           ++        TY  +++G CK+ +  EA  + N+L  RG V  +  Y  +I  L K G +
Sbjct: 163 LSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKI 222

Query: 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380
            +A   +  M   G+ P E T+  +I G C+ + +  AK +    L+ G   + V  + L
Sbjct: 223 HEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCL 282

Query: 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           + G C +G  DEA+ +FE M  +G   + ++ N LI G CK  ++
Sbjct: 283 MDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRL 327



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 124/257 (48%), Gaps = 7/257 (2%)

Query: 177 NSALLGCI-KIDRTDLVWKLYHDLIESG------YLIQAFCNDGKVSEGYELLRQVLEDG 229
           N+ ++ C+  + + D   +L+H L+  G       L++     G+  E  ++++ +L+  
Sbjct: 2   NADIVLCLCHVGKLDEALELFHSLVSDGCGLPADLLVRELSKAGRAEECLKVVKLMLDRQ 61

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289
            + E    N  I   C+     +       +       +  +Y  +IN  CK+++  EA 
Sbjct: 62  QLRERHLVNITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAI 121

Query: 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349
           ++F ++K  G  P T  Y T+I GLC++  LG+A++ +  ++  G   +  TYN ++ G+
Sbjct: 122 QLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGF 181

Query: 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           C+ D + EA  L  E++ +G   T+  YN +I  L   G+  EA   F  M + G+    
Sbjct: 182 CKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQE 241

Query: 410 ITYNTLIQGYCKEGKIV 426
           +T+  LI G CK  ++ 
Sbjct: 242 VTFTVLIDGLCKANRVA 258



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 47/204 (23%), Positives = 84/204 (41%), Gaps = 15/204 (7%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCL 148
           FF +L S  G SP +V C+ L D   +      A    + + + G +PN  S  + I  L
Sbjct: 264 FFSYLES--GGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGL 321

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----- 203
           C++  + +A   F ++ +      + T+++ + G  +  R D   ++   L++ G     
Sbjct: 322 CKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDV 381

Query: 204 ----YLIQAFCNDGKVSEGYELLR-QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                LI   C+ G++ E  ++    +   G  P N   N L++ F          EL  
Sbjct: 382 VMYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQ 441

Query: 259 TMVARNRAPDNFTYEEVINGLCKS 282
             V R   PD  T+  + N   K+
Sbjct: 442 RFVERGVQPDCRTFSAMANNTAKT 465


>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
 gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/325 (27%), Positives = 149/325 (45%), Gaps = 12/325 (3%)

Query: 110 NVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N+    L  A     AM FL+     G +P   +    I     +GL E+A+ A+  + +
Sbjct: 328 NICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVK 387

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSE 217
            G+F S  T +S ++G  K+ R      L +++I  G          L+  +   G V+ 
Sbjct: 388 FGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAG 447

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            Y L  ++   G+ P+  AF+  I+            ++   M  +   P+NF Y  +I 
Sbjct: 448 AYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIR 507

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G C S +  EA  +  ++  +G +PD      +I+GLCK G +  A  ++  M H GL+P
Sbjct: 508 GFCNSGRLQEALMLEREMARKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIP 567

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN++I GYC+  +      +  +M   G+     TYN  + GLC   +   A  + 
Sbjct: 568 DIVTYNTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMML 627

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKE 422
           EE+   G+  D +TYNT++ G C +
Sbjct: 628 EELISAGVVPDTVTYNTVMNGVCTD 652



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 159/351 (45%), Gaps = 13/351 (3%)

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPN 139
           Q N++ +   F  +    G  P++V  N L +  V+AR    A    + + S   +P+  
Sbjct: 232 QGNMMEARNLFDGM-KEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCT 290

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199
           +  + +      G  E+       L + G       +N  + G       D   K   D+
Sbjct: 291 TFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDM 350

Query: 200 IESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +E G          +I A+   G   + Y+  R +++ GL P +   + LI    +    
Sbjct: 351 LEKGITPTVVAFNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRL 410

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
               +LL+ M+      +   +  +++G  +      AY ++N+++ RG  PD V ++  
Sbjct: 411 QEARDLLYEMIVEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAF 470

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I+GL  +G + +A  ++ +M  KG +PN + YNS+I G+C    L+EA  L +EM  KG 
Sbjct: 471 INGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGL 530

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                T N +I GLC  GR   A  +F  M   G+  D++TYNTLI GYCK
Sbjct: 531 LPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTYNTLIDGYCK 581



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 78/277 (28%), Positives = 130/277 (46%), Gaps = 9/277 (3%)

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLI 206
           EA     +++E+G+  S           ++I     VWKL   +I  G          +I
Sbjct: 97  EALEIVGRMREVGLRPSSSAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVI 156

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266
             FC  G V  G  LL  + +    P+  A+N LI+ +C +         +  M+     
Sbjct: 157 LGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCT 216

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326
           P   T+  VIN  C     +EA  +F+ +KE G++P+ V Y T+++G  K   +G A  +
Sbjct: 217 PSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANML 276

Query: 327 WFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386
           + EM  K + P+  T+N ++ G+ R    E+  RL +++   G    +  YN  ++GLC 
Sbjct: 277 YEEMKSKAVAPDCTTFNILVAGHYRYGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCW 336

Query: 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G  DEA    E+M +KGI   V+ +N++I  Y + G
Sbjct: 337 AGWLDEAMKFLEDMLEKGITPTVVAFNSIIAAYSRAG 373



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 89/369 (24%), Positives = 159/369 (43%), Gaps = 47/369 (12%)

Query: 104 PDLVSCNVLFDS-LVEARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PD+ + N+L ++     + F     M F+   G +P+  +    I   C  G + EA   
Sbjct: 182 PDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNL 241

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVWK------------LYHDLIESGY- 204
           F  +KE G   ++  +N+ + G +K   I + +++++             ++ L+   Y 
Sbjct: 242 FDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYR 301

Query: 205 ----------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236
                                        +   C  G + E  + L  +LE G+ P   A
Sbjct: 302 YGREEDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVA 361

Query: 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296
           FN +I+ +       +  +    MV     P + T   +I GL K  +  EA  +  ++ 
Sbjct: 362 FNSIIAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMI 421

Query: 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356
             G   +   +T ++ G  +MG +  A  +W EM  +G+ P+   +++ I+G   +  ++
Sbjct: 422 VEGLPINKAAFTLLLDGYFRMGDVAGAYSLWNEMEGRGIHPDAVAFSAFINGLSIVGLVD 481

Query: 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
           EA  +  +M  KG+      YN+LI G C  GR  EA  L  EMA+KG+  D+ T N +I
Sbjct: 482 EAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSGRLQEALMLEREMARKGLLPDIFTTNIII 541

Query: 417 QGYCKEGKI 425
            G CKEG++
Sbjct: 542 NGLCKEGRM 550



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/381 (21%), Positives = 152/381 (39%), Gaps = 48/381 (12%)

Query: 93  FQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLC 149
           F W   H  F  D    + L    ++      A++    +   G  P+ +++ +  + L 
Sbjct: 67  FMW-KRHAEFESDFSVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSSSAITILFKLLL 125

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG-C----IKIDRTDLV----WKLYHDLI 200
             G     +     +   G     + +N+ +LG C    +K+  + L     +K   D+ 
Sbjct: 126 RIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCVMQKFKCQPDVY 185

Query: 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260
               LI A+C  G+  +    +R ++++G  P    F  +I+ FC + N      L   M
Sbjct: 186 AYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGNMMEARNLFDGM 245

Query: 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV--------------- 305
                 P+   Y  ++NG  K+R   +A  ++ ++K +   PD                 
Sbjct: 246 KEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNILVAGHYRYGRE 305

Query: 306 --------------------MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345
                               +Y   + GLC  GWL +A K   +M+ KG+ P    +NS+
Sbjct: 306 EDRDRLLRDLSQSGSLSISSLYNICVSGLCWAGWLDEAMKFLEDMLEKGITPTVVAFNSI 365

Query: 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           I  Y R    E+A + ++ M+  G   +++T ++LI GL    R  EA  L  EM  +G+
Sbjct: 366 IAAYSRAGLEEKAYKAYRMMVKFGLFPSSLTCSSLIMGLSKLWRLQEARDLLYEMIVEGL 425

Query: 406 FRDVITYNTLIQGYCKEGKIV 426
             +   +  L+ GY + G + 
Sbjct: 426 PINKAAFTLLLDGYFRMGDVA 446



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 112/250 (44%), Gaps = 10/250 (4%)

Query: 184 IKIDRT----DLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           + +DR+    + +WK  H   ES +     L++ F       E  E++ ++ E GL P +
Sbjct: 56  VGVDRSREVVEFMWK-RHAEFESDFSVLDTLMRGFLKVEMGCEALEIVGRMREVGLRPSS 114

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
           +A   L        + G V +LL  M+ +   P N  +  VI G C+         +   
Sbjct: 115 SAITILFKLLLRIGDHGSVWKLLRGMIHQGPRPCNRNFNAVILGFCRKGHVKVGESLLCV 174

Query: 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354
           +++    PD   Y  +I+  C  G   DA      MI  G  P+  T+ ++I+ +C   N
Sbjct: 175 MQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDNGCTPSLVTFGTVINAFCNQGN 234

Query: 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414
           + EA+ L   M + G+    V YNTL+ G        +A  L+EEM  K +  D  T+N 
Sbjct: 235 MMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARDIGQANMLYEEMKSKAVAPDCTTFNI 294

Query: 415 LIQGYCKEGK 424
           L+ G+ + G+
Sbjct: 295 LVAGHYRYGR 304


>gi|224083888|ref|XP_002307160.1| predicted protein [Populus trichocarpa]
 gi|222856609|gb|EEE94156.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 140/298 (46%), Gaps = 9/298 (3%)

Query: 136 PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195
           PN  +  + I  L ++G ++ A   F  +  +G    +  +N+ + G    +R      L
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGL 381

Query: 196 YHDLIESGYLIQAF---------CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246
             ++ ESG    +F         C    +S    LL+++   G VP       L+   C+
Sbjct: 382 LQEMEESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCK 441

Query: 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306
                   + L  M      PD   Y   ++GL K ++  +A ++F D+  +GY PD + 
Sbjct: 442 HGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIA 501

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           Y  +I GLCK   + +A+ +  EM  KGL+P+  TYN++I G C+ D+LEEA      M+
Sbjct: 502 YNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMI 561

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           +K      +TY+TLI GLC  GR D+A  L+ EM +KG     I Y   I G    G+
Sbjct: 562 EKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGR 619



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/331 (27%), Positives = 157/331 (47%), Gaps = 18/331 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMD-FLDSTGFSPNPNSLELY---IQCLCESGLIEEAFC 159
           P+  + +++ + L++     +A+  F D       P+ L LY   I  LC S  ++E+  
Sbjct: 322 PNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLL-LYNNLIDGLCTSNRLQESCG 380

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY-------HDLI----ESGYLIQA 208
              +++E G+  +  T N+ + GC+   R D+   L+       H  +     S  L++ 
Sbjct: 381 LLQEMEESGIEPTSFT-NNCIFGCL-CRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKE 438

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C  GK  E  + L  + E+G  P+  A++  +    + +   +  +L   + A+   PD
Sbjct: 439 LCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPD 498

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I GLCK+++  EA  + ++++E+G VP  V Y T+I GLCK   L +A     
Sbjct: 499 VIAYNILIKGLCKTQRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLS 558

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            MI K   PN  TY+++I+G C     ++A  L  EM  KG   +++ Y   I GL   G
Sbjct: 559 MMIEKEREPNVITYSTLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCG 618

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419
           R +EA     EM ++ +  D   Y  L+  +
Sbjct: 619 RPNEALVYLREMEEREMKPDTYVYVGLLNAF 649



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 146/342 (42%), Gaps = 13/342 (3%)

Query: 80  LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSP 136
           L +  ++ L++  F+ + +  G  PDL+  N L D L  +   + +   L   + +G  P
Sbjct: 334 LIKTGDLDLAVGLFRDM-ARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEP 392

Query: 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196
              +      CLC    I  A     K++  G    IK   S +    K  +     K  
Sbjct: 393 TSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFL 452

Query: 197 HDLIESGY----LIQAFCNDG-----KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247
            D+ E G+    +  + C DG     +V +  +L + +   G  P+  A+N LI   C+ 
Sbjct: 453 VDMAEEGFQPDIVAYSACLDGLIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKT 512

Query: 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307
           +       LLH M  +   P   TY  +I+GLCK+    EA    + + E+   P+ + Y
Sbjct: 513 QRIAEAQNLLHEMEEKGLVPSAVTYNTLIDGLCKTDHLEEAMLFLSMMIEKEREPNVITY 572

Query: 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367
           +T+I+GLC  G   DA  +W EM  KG  P+   Y + IHG        EA    +EM +
Sbjct: 573 STLINGLCNAGRPDDALVLWNEMGRKGCTPSSIAYMAFIHGLSNCGRPNEALVYLREMEE 632

Query: 368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           +     T  Y  L+    +      A+ + +EM  KG F D+
Sbjct: 633 REMKPDTYVYVGLLNAFLVDSNQPLAFEILQEMVDKGKFPDL 674



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/343 (22%), Positives = 153/343 (44%), Gaps = 25/343 (7%)

Query: 109 CNVLFDSLVEARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           C++++  + E+R  K     D +  +GF+P+ +  ++ I  LC +  +++A C +S++K 
Sbjct: 174 CSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKG 233

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-------GYLIQAFCNDGKVSEGY 219
             +   +K     +    K +     ++  H+ ++          ++ +  ++G V + Y
Sbjct: 234 FKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAY 293

Query: 220 ELLRQV-----LEDG----------LVPEN-TAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LL+ +     + DG          +VP N T F+ +I+   +  +      L   M   
Sbjct: 294 HLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARI 353

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD   Y  +I+GLC S +  E+  +  +++E G  P +     +   LC+   +  A
Sbjct: 354 GCKPDLLLYNNLIDGLCTSNRLQESCGLLQEMEESGIEPTSFTNNCIFGCLCRRHDISGA 413

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
             +  +M   G +P      S++   C+     EA +   +M ++G+    V Y+  + G
Sbjct: 414 LHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEVEACKFLVDMAEEGFQPDIVAYSACLDG 473

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           L      D+A  LF+++  +G   DVI YN LI+G CK  +I 
Sbjct: 474 LIKIQEVDQALKLFQDICAQGYCPDVIAYNILIKGLCKTQRIA 516



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 156/364 (42%), Gaps = 67/364 (18%)

Query: 124 VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL-- 181
           ++MD ++S     +P +L   I+CL  +GL+ EA   F ++++MG+        + LL  
Sbjct: 17  LSMDVVNSRCLM-SPGALGFLIRCLGNAGLVVEANLLFDQVQKMGLCVPNSYSYTCLLEV 75

Query: 182 --GCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGL 230
               I ID  ++  K  HD    G+         ++Q +CN  +  +  ++  ++ + G 
Sbjct: 76  LSKSICIDLLEMRLKEMHD---HGWGFDKYTLTPVLQVYCNMAEFDKALDVFNEIHDRGW 132

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYR 290
           V E   F+ L+  F +     +  EL+ TM  +N   +  T+  +I G  K  +  +A  
Sbjct: 133 VDE-YVFSILVLAFSKWGKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALH 191

Query: 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW----------------------- 327
           +F+ +K+ G+ PD  +Y  +I GLC    +  A  ++                       
Sbjct: 192 LFDKMKKSGFTPDISLYDVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFS 251

Query: 328 --------FEMIHKGLLPNEYT--YNSMIHGYCRIDNLEEAKRLHKEMLDK---GYGE-- 372
                   FE +H+ + P   T  YNS+++      ++ +A  L + +      G GE  
Sbjct: 252 KEEELTCFFEEMHEDMDPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIG 311

Query: 373 -----------TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
                       + T++ +I GL   G  D A  LF +MA+ G   D++ YN LI G C 
Sbjct: 312 KLFRGKAMVPPNSTTFSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCT 371

Query: 422 EGKI 425
             ++
Sbjct: 372 SNRL 375



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 131/300 (43%), Gaps = 27/300 (9%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           G +++A      ++E  V  + KT+ S + G +K  R D    L+  + +SG+       
Sbjct: 149 GKVDKACELIETMEEKNVRLNKKTFCSLIYGFVKESRVDKALHLFDKMKKSGFTPDISLY 208

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +I   C +  V +   L  ++    + P+     KLIS F +++      E +H  + 
Sbjct: 209 DVIIGGLCVNKDVKKALCLYSEMKGFKIQPDVKIVTKLISSFSKEEELTCFFEEMHEDM- 267

Query: 263 RNRAPDNFTYEEVINGLC------KSRKRLEAYRVFNDLKE-------RGYV---PDTVM 306
            +       Y  V+N L       K+   L+A  + N + +       RG     P++  
Sbjct: 268 -DPKASTLLYNSVLNSLVDNGSVHKAYHLLQAITIGNCIGDGEIGKLFRGKAMVPPNSTT 326

Query: 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366
           ++ VI+GL K G L  A  ++ +M   G  P+   YN++I G C  + L+E+  L +EM 
Sbjct: 327 FSIVINGLIKTGDLDLAVGLFRDMARIGCKPDLLLYNNLIDGLCTSNRLQESCGLLQEME 386

Query: 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + G   T+ T N +   LC       A HL ++M   G    +    +L++  CK GK V
Sbjct: 387 ESGIEPTSFTNNCIFGCLCRRHDISGALHLLKKMRIHGHVPWIKHSTSLVKELCKHGKEV 446


>gi|15239874|ref|NP_196771.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171712|sp|Q9FMQ1.1|PP376_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g12100, mitochondrial; Flags: Precursor
 gi|9759377|dbj|BAB10028.1| unnamed protein product [Arabidopsis thaliana]
 gi|28973713|gb|AAO64173.1| unknown protein [Arabidopsis thaliana]
 gi|29824237|gb|AAP04079.1| unknown protein [Arabidopsis thaliana]
 gi|110737169|dbj|BAF00534.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004380|gb|AED91763.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 816

 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 100/370 (27%), Positives = 175/370 (47%), Gaps = 49/370 (13%)

Query: 104 PDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P L++ N L D   +A    ++FKV  + + +    P+  +    ++ L ++G++E+A  
Sbjct: 247 PSLITYNTLIDGYCKAGNPEKSFKVR-ERMKADHIEPSLITFNTLLKGLFKAGMVEDAEN 305

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFC 210
              ++K++G      T++    G    ++ +    +Y   ++SG          L+ A C
Sbjct: 306 VLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALC 365

Query: 211 NDGKVSEGYELLRQVLEDGLVP-----------------------------------ENT 235
            +GK+ +  E+L + +  GLVP                                   ++ 
Sbjct: 366 KEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHL 425

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295
           A+N LI RFCE        + ++ M  +  +P   TY  +I G  +  +  + + +  ++
Sbjct: 426 AYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEM 485

Query: 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355
           ++ G +P+ V Y T+I+ LCK   L +A+ +  +M  +G+ P    YN +I G C    +
Sbjct: 486 EDNGTMPNVVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKI 545

Query: 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415
           E+A R  KEML KG     VTYNTLI GL + G+  EA  L  E+++KG+  DV TYN+L
Sbjct: 546 EDAFRFSKEMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSL 605

Query: 416 IQGYCKEGKI 425
           I GY   G +
Sbjct: 606 ISGYGFAGNV 615



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 154/335 (45%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + ++LFD        + A+   ++   +G   N  +  + +  LC+ G IE+A
Sbjct: 314 GFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCSILLNALCKEGKIEKA 373

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIKIDRTDLVWK--------LYHDLIESGYLIQA 208
                +    G+  +   +N+ + G C K D      K        +  D +    LI+ 
Sbjct: 374 EEILGREMAKGLVPNEVIYNTMIDGYCRKGDLVGARMKIEAMEKQGMKPDHLAYNCLIRR 433

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G++    + + ++   G+ P    +N LI  +  K  F +  ++L  M      P+
Sbjct: 434 FCELGEMENAEKEVNKMKLKGVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPN 493

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             +Y  +IN LCK  K LEA  V  D+++RG  P   +Y  +I G C  G + DA +   
Sbjct: 494 VVSYGTLINCLCKGSKLLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSK 553

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG+  N  TYN++I G      L EA+ L  E+  KG      TYN+LI+G    G
Sbjct: 554 EMLKKGIELNLVTYNTLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAG 613

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
                  L+EEM + GI   + TY+ LI    KEG
Sbjct: 614 NVQRCIALYEEMKRSGIKPTLKTYHLLISLCTKEG 648



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 137/288 (47%), Gaps = 9/288 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----- 202
           L ES +I EA   F  L+  G++ S  +    L   +K  +  +   ++ +++ES     
Sbjct: 119 LNESKMISEAADLFFALRNEGIYPSSDSLTLLLDHLVKTKQFRVTINVFLNILESDFRPS 178

Query: 203 ----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
               G  IQA      V +G EL  ++  D + P    +N LI   C+ K      +L  
Sbjct: 179 KFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFD 238

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+AR   P   TY  +I+G CK+    ++++V   +K     P  + + T++ GL K G
Sbjct: 239 EMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGLFKAG 298

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            + DA  +  EM   G +P+ +T++ +  GY   +  E A  +++  +D G      T +
Sbjct: 299 MVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYETAVDSGVKMNAYTCS 358

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            L+  LC  G+ ++A  +      KG+  + + YNT+I GYC++G +V
Sbjct: 359 ILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGDLV 406



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 110/467 (23%), Positives = 185/467 (39%), Gaps = 60/467 (12%)

Query: 16  PRNFQNPNTQLRNLSIETKESQQLYTEIAKQV-CKITRTKPRWEQTLLSDIPSFNFNDP- 73
           P N    + +LRNL +     QQ   E A+ V   + R+      +      +F+ + P 
Sbjct: 49  PTNPVTGDEKLRNLRVLL---QQNRIETARGVLSSLLRSDSTPFASPKELFSAFSLSSPS 105

Query: 74  -------LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
                  L     L +   +  +   F  L +  G  P   S  +L D LV+ + F+V +
Sbjct: 106 LKHDFSYLLLSVLLNESKMISEAADLFFALRNE-GIYPSSDSLTLLLDHLVKTKQFRVTI 164

Query: 127 D-FLD--STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
           + FL+   + F P+       IQ   +   + +    F+++K   ++ S+  +N  + G 
Sbjct: 165 NVFLNILESDFRPSKFMYGKAIQAAVKLSDVGKGLELFNRMKHDRIYPSVFIYNVLIDGL 224

Query: 184 IKIDRTD---------LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
            K  R +         L  +L   LI    LI  +C  G   + +++  ++  D + P  
Sbjct: 225 CKGKRMNDAEQLFDEMLARRLLPSLITYNTLIDGYCKAGNPEKSFKVRERMKADHIEPSL 284

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT--------------------YEE 274
             FN L+    +         +L  M      PD FT                    YE 
Sbjct: 285 ITFNTLLKGLFKAGMVEDAENVLKEMKDLGFVPDAFTFSILFDGYSSNEKAEAALGVYET 344

Query: 275 VI---------------NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
            +               N LCK  K  +A  +      +G VP+ V+Y T+I G C+ G 
Sbjct: 345 AVDSGVKMNAYTCSILLNALCKEGKIEKAEEILGREMAKGLVPNEVIYNTMIDGYCRKGD 404

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
           L  AR     M  +G+ P+   YN +I  +C +  +E A++   +M  KG   +  TYN 
Sbjct: 405 LVGARMKIEAMEKQGMKPDHLAYNCLIRRFCELGEMENAEKEVNKMKLKGVSPSVETYNI 464

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           LI G       D+ + + +EM   G   +V++Y TLI   CK  K++
Sbjct: 465 LIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLL 511



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 92/343 (26%), Positives = 146/343 (42%), Gaps = 21/343 (6%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP + + N+L         F    D L   +  G  PN  S    I CLC+   + EA
Sbjct: 454 GVSPSVETYNILIGGYGRKYEFDKCFDILKEMEDNGTMPNVVSYGTLINCLCKGSKLLEA 513

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                 +++ GV   ++ +N  + GC    + +  ++   ++++ G          LI  
Sbjct: 514 QIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEMLKKGIELNLVTYNTLIDG 573

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               GK+SE  +LL ++   GL P+   +N LIS +    N  R   L   M      P 
Sbjct: 574 LSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRSGIKPT 633

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+ LC         R+F ++  +   PD ++Y  V+H     G +  A  +  
Sbjct: 634 LKTYHLLIS-LCTKEGIELTERLFGEMSLK---PDLLVYNGVLHCYAVHGDMEKAFNLQK 689

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           +MI K +  ++ TYNS+I G  ++  L E + L  EM  +       TYN ++ G C   
Sbjct: 690 QMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKGHCEVK 749

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGY-----CKEGKIV 426
               AY  + EM +KG   DV   N L+ G       KE +IV
Sbjct: 750 DYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIV 792



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/302 (22%), Positives = 119/302 (39%), Gaps = 18/302 (5%)

Query: 87  LLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLE 142
           LL  +  +      G SP +   N+L D          AF+ + + L   G   N  +  
Sbjct: 510 LLEAQIVKRDMEDRGVSPKVRIYNMLIDGCCSKGKIEDAFRFSKEML-KKGIELNLVTYN 568

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             I  L  +G + EA     ++   G+   + T+NS + G            LY ++  S
Sbjct: 569 TLIDGLSMTGKLSEAEDLLLEISRKGLKPDVFTYNSLISGYGFAGNVQRCIALYEEMKRS 628

Query: 203 G--------YLIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRV 253
           G        +L+ + C      EG EL  ++  E  L P+   +N ++  +    +  + 
Sbjct: 629 GIKPTLKTYHLLISLC----TKEGIELTERLFGEMSLKPDLLVYNGVLHCYAVHGDMEKA 684

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             L   M+ ++   D  TY  +I G  K  K  E   + +++  R   P+   Y  ++ G
Sbjct: 685 FNLQKQMIEKSIGLDKTTYNSLILGQLKVGKLCEVRSLIDEMNAREMEPEADTYNIIVKG 744

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
            C++     A   + EM  KG L +    N ++ G       +EA+ +  EM  +  G+ 
Sbjct: 745 HCEVKDYMSAYVWYREMQEKGFLLDVCIGNELVSGLKEEWRSKEAEIVISEMNGRMLGDV 804

Query: 374 TV 375
           TV
Sbjct: 805 TV 806


>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560,
           mitochondrial-like [Cucumis sativus]
          Length = 653

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/354 (27%), Positives = 170/354 (48%), Gaps = 20/354 (5%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF-----KVAMDF--LDSTGFSPNPNS 140
           +++RFF W      +    + C+V   SL+E   F     K+ + F  L   G     ++
Sbjct: 132 VAVRFFFWAGKQKKYVHK-IECHV---SLIELLTFSADLVKIRLVFFELKDRGLLMTESA 187

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN---SALLGCIKIDRTDLVW---- 193
               I+     GL+EE    + ++KE G+  S+ T+N   + L+  + I+  + V+    
Sbjct: 188 ANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMD 247

Query: 194 --KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             K+  D +    +I+ +C  GK+ +  E  R +    + P+   +  LI     +++F 
Sbjct: 248 GGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQACYSERDFD 307

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               L   M  R       +Y  VI GLCK RK +EAY VF  + ++G   +  +YT +I
Sbjct: 308 TCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANVAIYTALI 367

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
               K G + +A +++  M ++G  P+  TY+ +++G C+   L++   L     +KG  
Sbjct: 368 DSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVA 427

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + Y +LI GL   GR ++A +LFEEM++KG  RD   YN +I    K GKI
Sbjct: 428 INAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKI 481



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 83/338 (24%), Positives = 147/338 (43%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L + N L + LV +   + A    + +D     P+  +  + I+  C++G +++A
Sbjct: 215 GIDPSLYTYNFLVNGLVNSMFIESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKA 274

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  ++   V     T+ + +  C      D    LY ++ E G          +I  
Sbjct: 275 MEKFRDMEMKNVKPDKITYMTLIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGG 334

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C   K  E Y +   + + G       +  LI  + +  +      L   M      PD
Sbjct: 335 LCKQRKCMEAYAVFETMNQKGCRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPD 394

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++NGLCKS +  +   +F+  + +G   + + Y ++I GL K G + DA  ++ 
Sbjct: 395 AVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFE 454

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM  KG   + Y YN++I    +   +++A  L   M ++G  +T  T+  LI GL    
Sbjct: 455 EMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEH 514

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           + +EA   +++M  KGI   V ++  L  G C  GK+ 
Sbjct: 515 KNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVA 552



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 106/242 (43%), Gaps = 14/242 (5%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYI 145
           ++R F+ + +  GF PD V+ +VL + L ++      M   DF  + G + N       I
Sbjct: 379 AMRLFERMKNE-GFEPDAVTYSVLVNGLCKSGRLDDGMELFDFCRNKGVAINAMFYASLI 437

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-- 203
             L ++G IE+A   F ++ E G       +N+ +    K  + D    L+  + E G  
Sbjct: 438 DGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGKIDQALALFGRMEEEGCD 497

Query: 204 -------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                   LI     + K  E  +   ++++ G+ P   +F  L    C      R  ++
Sbjct: 498 QTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRALAIGLCLCGKVARACKI 557

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  +      P+   +E++IN LCK+++  EA ++ + + +RG      + T +I+ L K
Sbjct: 558 LDDLAPMGIIPET-AFEDMINTLCKAQRIKEACKLADGIVDRGREIPGRIRTVLINALRK 616

Query: 317 MG 318
            G
Sbjct: 617 AG 618


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/327 (28%), Positives = 157/327 (48%), Gaps = 12/327 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +++  +L ++ +       A+  LD   S G  P+  +    I+ +C+ G+++ AF  
Sbjct: 222 PTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEM 281

Query: 161 FSKLKEMGVFGSIKTWN---SALLGCIKIDRTD-LVWKLYHD-----LIESGYLIQAFCN 211
              L+  G    + ++N    ALL   K +  + L+ K++ +     ++    LI   C 
Sbjct: 282 IRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCR 341

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGK+ E   LL+ + E GL P+  +++ LI+ FC +       E L TM++    PD   
Sbjct: 342 DGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVN 401

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  V+  LCK+ K  +A  +F  L E G  P++  Y T+   L   G    A  M  EM+
Sbjct: 402 YNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMV 461

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
             G+ P+E TYNSMI   CR   +++A  L  +M    +  + VTYN ++ G C   R +
Sbjct: 462 SNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIE 521

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQG 418
           +A  + + M   G   +  TY  LI+G
Sbjct: 522 DAIDVLDSMVGNGCRPNETTYTVLIEG 548



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 87/336 (25%), Positives = 150/336 (44%), Gaps = 12/336 (3%)

Query: 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAF 158
           FSPD V+ N++  SL       +A+  LD   S    P   +  + I+     G ++EA 
Sbjct: 185 FSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEAL 244

Query: 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAF 209
               ++   G+   + T+N+ + G  K    D  +++           D+I    L++A 
Sbjct: 245 KLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRAL 304

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
            N GK  EG +L+ ++  +   P    ++ LI+  C          LL  M  +   PD 
Sbjct: 305 LNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDA 364

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           ++Y+ +I   C+  +   A      +   G +PD V Y TV+  LCK G    A +++ +
Sbjct: 365 YSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGK 424

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +   G  PN  +YN+M        +   A  +  EM+  G     +TYN++I+ LC  G 
Sbjct: 425 LGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGM 484

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            D+A+ L  +M        V+TYN ++ G+CK  +I
Sbjct: 485 VDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRI 520



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 150/363 (41%), Gaps = 33/363 (9%)

Query: 67  SFNFNDPLFFREFLK--QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKV 124
           S  F D    + F +  +  N + S+   + +    G++PD++ C  L       R    
Sbjct: 80  SLGFRDTQMLKIFHRSCRSGNYIESLHLLETM-VRKGYNPDVILCTKLIKGFFTLRNVPK 138

Query: 125 A---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181
           A   M+ L+  G  P+  +    I   C+   I++A     +++         T+N    
Sbjct: 139 AVRVMEILEKFG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN---- 193

Query: 182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241
                                  +I + C+ GK+    ++L Q+L D   P    +  LI
Sbjct: 194 ----------------------IMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILI 231

Query: 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301
                +       +LL  M++R   PD FTY  +I G+CK      A+ +  +L+ +G  
Sbjct: 232 EATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCE 291

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361
           PD + Y  ++  L   G   +  K+  +M  +   PN  TY+ +I   CR   +EEA  L
Sbjct: 292 PDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNL 351

Query: 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            K M +KG      +Y+ LIA  C  GR D A    E M   G   D++ YNT++   CK
Sbjct: 352 LKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCK 411

Query: 422 EGK 424
            GK
Sbjct: 412 NGK 414



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 156/353 (44%), Gaps = 14/353 (3%)

Query: 85  NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSL 141
           NV  ++R  + L   +G  PD+ + N L +   +      A   LD   S  FSP+  + 
Sbjct: 135 NVPKAVRVMEILEK-FG-QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 192

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
            + I  LC  G ++ A     +L       ++ T+   +   +     D   KL  +++ 
Sbjct: 193 NIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS 252

Query: 202 SGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252
            G          +I+  C +G V   +E++R +   G  P+  ++N L+     +  +  
Sbjct: 253 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEE 312

Query: 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312
             +L+  M +    P+  TY  +I  LC+  K  EA  +   +KE+G  PD   Y  +I 
Sbjct: 313 GEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIA 372

Query: 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372
             C+ G L  A +    MI  G LP+   YN+++   C+    ++A  +  ++ + G   
Sbjct: 373 AFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSP 432

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            + +YNT+ + L   G    A H+  EM   GI  D ITYN++I   C+EG +
Sbjct: 433 NSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMV 485



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 70/203 (34%), Positives = 98/203 (48%), Gaps = 1/203 (0%)

Query: 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282
           RQ     L   +T   K+  R C   N+     LL TMV +   PD     ++I G    
Sbjct: 74  RQQHSQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTL 133

Query: 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342
           R   +A RV   L++ G  PD   Y  +I+G CKM  + DA ++   M  K   P+  TY
Sbjct: 134 RNVPKAVRVMEILEKFGQ-PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTY 192

Query: 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402
           N MI   C    L+ A ++  ++L      T +TY  LI    L G  DEA  L +EM  
Sbjct: 193 NIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLS 252

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           +G+  D+ TYNT+I+G CKEG +
Sbjct: 253 RGLKPDMFTYNTIIRGMCKEGMV 275



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 37/271 (13%)

Query: 191 LVWKLYH-DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN 249
           +V K Y+ D+I    LI+ F     V +   ++ ++LE    P+  A+N LI+ FC+   
Sbjct: 111 MVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVM-EILEKFGQPDVFAYNALINGFCKMNR 169

Query: 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309
               + +L  M +++ +PD  TY  +I  LC   K   A +V + L      P  + YT 
Sbjct: 170 IDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTI 229

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----------IDNL---- 355
           +I      G + +A K+  EM+ +GL P+ +TYN++I G C+          I NL    
Sbjct: 230 LIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKG 289

Query: 356 ---------------------EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
                                EE ++L  +M  +      VTY+ LI  LC  G+ +EA 
Sbjct: 290 CEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAM 349

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +L + M +KG+  D  +Y+ LI  +C+EG++
Sbjct: 350 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRL 380



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/305 (22%), Positives = 132/305 (43%), Gaps = 29/305 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD++S N+L  +L+    ++     M  + S    PN  +  + I  LC  G IEEA
Sbjct: 289 GCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEA 348

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
                 +KE G+     +++                           LI AFC +G++  
Sbjct: 349 MNLLKLMKEKGLTPDAYSYDP--------------------------LIAAFCREGRLDV 382

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
             E L  ++ DG +P+   +N +++  C+     +  E+   +     +P++ +Y  + +
Sbjct: 383 AIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFS 442

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
            L  S  ++ A  +  ++   G  PD + Y ++I  LC+ G +  A ++  +M      P
Sbjct: 443 ALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHP 502

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +  TYN ++ G+C+   +E+A  +   M+  G      TY  LI G+   G   EA  L 
Sbjct: 503 SVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMELA 562

Query: 398 EEMAQ 402
            ++ +
Sbjct: 563 NDLVR 567


>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
          Length = 698

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 166/338 (49%), Gaps = 13/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G SP++   N + ++L + R+   A D L+    + F+P+  +    I   C  G + EA
Sbjct: 181 GLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREA 240

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLG-CIK---IDRTDLVWKLYH-----DLIESGYLIQA 208
                +    G+  +  ++   + G C++   +  +DL+ ++       D+I  G LI  
Sbjct: 241 LKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHG 300

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
               G+V++   +  ++ E  ++P+   +N LIS  C+K+       LL  M+ +   PD
Sbjct: 301 LVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEMLEQKVQPD 360

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            F Y  +I+G  +S K  +A ++F  ++E+   PD V Y  +I G CK G + +A     
Sbjct: 361 KFIYTTLIDGFVRSDKLSDARKIFEFMEEKA-CPDIVAYNVMIKGYCKFGMMKEAVTCMS 419

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G +P+E+TY +++ GY +  ++  + RL  +M+ +       TY +LI G C  G
Sbjct: 420 SMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNIFTYASLICGYCNIG 479

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            T  A  LF +M  +G+F +V+ Y  LI    K+ K++
Sbjct: 480 DTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVI 517



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 154/337 (45%), Gaps = 13/337 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P  V  NVL D           +  L   ++ G  P   +    I  L   G + + 
Sbjct: 111 GCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKV 170

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                +++  G+  +++ +N+ +    K         + + +++S +         +I  
Sbjct: 171 ESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAG 230

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC +G V E  +LLR+ +  GL P   ++  LI  FC +      S+LL  M+ R   PD
Sbjct: 231 FCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPD 290

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             T   +I+GL  S +  +A  V   + ER  +PD  +Y  +I GLCK   L  A+ +  
Sbjct: 291 MITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLE 350

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ + + P+++ Y ++I G+ R D L +A+++ + M +K   +  V YN +I G C  G
Sbjct: 351 EMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPD-IVAYNVMIKGYCKFG 409

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              EA      M + G   D  TY TL+ GY K+G I
Sbjct: 410 MMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDI 446



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 95/328 (28%), Positives = 155/328 (47%), Gaps = 33/328 (10%)

Query: 100 YGFSPDLVSCNVLFDSLVEA----RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155
           +G  PD   CN L   LVE     RA  +  + L   G + + ++  + ++ LC  G +E
Sbjct: 40  HGALPDAPDCNCLLRLLVERRRWERARGLYGEMLVREGGADDYSTC-VMVRGLCLEGRVE 98

Query: 156 EAFCAFSKLKEMGVFGSIKT-WNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK 214
           E              G I+  W     GC+          +++++     LI  +C  G 
Sbjct: 99  EG------------RGLIEARWGE---GCVP-------GAVFYNV-----LIDGYCRRGD 131

Query: 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274
           +  G  LL ++   G++P    +  +I     K +  +V  LL  M AR  +P+   Y  
Sbjct: 132 IGRGLLLLGEMETKGIIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNT 191

Query: 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
           VIN LCK R   +A  + N + +  + PD V + T+I G C+ G + +A K+  E I +G
Sbjct: 192 VINALCKCRSASQASDMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRG 251

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           L PN+ +Y  +IHG+C       A  L  EM+ +G+    +T   LI GL + G+ ++A 
Sbjct: 252 LEPNQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQVNDAL 311

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKE 422
            + E+MA++ +  D   YN LI G CK+
Sbjct: 312 IVREKMAERQVMPDANIYNVLISGLCKK 339



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 67/221 (30%), Positives = 109/221 (49%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           +++  C +G+V EG  L+     +G VP    +N LI  +C + + GR   LL  M  + 
Sbjct: 87  MVRGLCLEGRVEEGRGLIEARWGEGCVPGAVFYNVLIDGYCRRGDIGRGLLLLGEMETKG 146

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P   TY  +I+ L +     +   +  +++ RG  P+  +Y TVI+ LCK      A 
Sbjct: 147 IIPTVVTYGAIIHWLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQAS 206

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
            M  +M+     P+  T+N+MI G+CR  ++ EA +L +E + +G     ++Y  LI G 
Sbjct: 207 DMLNQMVKSRFNPDVVTFNTMIAGFCREGDVREALKLLREAIRRGLEPNQLSYTPLIHGF 266

Query: 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           C+ G    A  L  EM  +G   D+IT   LI G    G++
Sbjct: 267 CVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVVSGQV 307



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 148/350 (42%), Gaps = 26/350 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAM---DFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G +PD+++   L   LV +     A+   + +      P+ N   + I  LC+  ++  A
Sbjct: 286 GHTPDMITLGALIHGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAA 345

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH--------DLIESGYLIQAF 209
                ++ E  V      + + + G ++ D+     K++         D++    +I+ +
Sbjct: 346 KNLLEEMLEQKVQPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACPDIVAYNVMIKGY 405

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C  G + E    +  + + G +P+   +  L+  + +K +      LL  M+ R   P+ 
Sbjct: 406 CKFGMMKEAVTCMSSMRKAGCIPDEFTYTTLVDGYAKKGDISASLRLLCDMMKRRCKPNI 465

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           FTY  +I G C       A  +F  ++  G  P+ V YT +I  L K   +  A   +  
Sbjct: 466 FTYASLICGYCNIGDTYSAEDLFAKMQSEGLFPNVVHYTVLIGSLFKKDKVIQAAAYFEH 525

Query: 330 MIHKGLLPNEYTYNSMIHGY--CRI----DNLEEAKRLHKE---------MLDKGYGETT 374
           M+     PN+ T + +++G   CR      N  + K+ H++         ++  G     
Sbjct: 526 MLLNHCPPNDATVHYLVNGLVNCRHGMVNSNRSDTKQAHEKSALLDVFRGLISDGLDPRI 585

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             YN +I  LC H    +A  L ++M+ KG   D IT+ +L+ G+   G+
Sbjct: 586 SAYNAIIFSLCRHNMLGKAMDLKDKMSNKGCLPDPITFLSLLYGFSSAGE 635


>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
 gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 39/324 (12%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDS----TGFSPNPNSLELYIQCLCESGLIEEAFC 159
           P ++    L  ++V+ R +  A+  L       G SPN  +L + I C C+   ++  F 
Sbjct: 82  PCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLNILINCFCKLQHVDLGFS 141

Query: 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219
             +K+ ++G                          L  D++    LI   C  GK S+  
Sbjct: 142 VLAKVIKLG--------------------------LQPDVVPFTTLINGLCKVGKFSQAV 175

Query: 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279
           EL  + +E G       +N LI   C    +   S +L+ M + N  PD  T+  +++  
Sbjct: 176 ELFDETVERG-------YNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTF 228

Query: 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           CK  K  EA  V   + E     D V Y ++++G      + +ARK++  MI KG  PN 
Sbjct: 229 CKEGKVSEAQGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNV 288

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399
           ++YN +I+GYC+ + ++EAK+L  EM+ +G     V+YNT   G C  G+  EA  L E 
Sbjct: 289 FSYNILINGYCKAEMIDEAKQLFNEMIHQGLTPNIVSYNT--HGFCQLGKLREAQELNEN 346

Query: 400 MAQKGIFRDVITYNTLIQGYCKEG 423
           M   G   D+ TY+ L+ G+CK+G
Sbjct: 347 MHTNGNLPDLCTYSILLDGFCKQG 370



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 83/167 (49%), Gaps = 8/167 (4%)

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKMG 318
           M+ R   P    + ++++ + K R+  +A    +   E  G  P+T     +I+  CK+ 
Sbjct: 75  MLHRKPLPCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLNILINCFCKLQ 134

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +     +  ++I  GL P+   + ++I+G C++    +A  L  E +++GY       N
Sbjct: 135 HVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDETVERGY-------N 187

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +LI GLC   +  EA  +  EM    I  D++T+N L+  +CKEGK+
Sbjct: 188 SLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKV 234


>gi|218184541|gb|EEC66968.1| hypothetical protein OsI_33625 [Oryza sativa Indica Group]
          Length = 1351

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 166/338 (49%), Gaps = 12/338 (3%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEE 156
           +G  P++ S  +    L +AR F  A   L   ++ G  P+  +  + IQ LC++G I +
Sbjct: 303 HGVKPNVYSYTICIRVLGQARRFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISD 362

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
           A   F K+K+        T+ + L        +  V ++++ +   GY         +I 
Sbjct: 363 AKDVFWKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVID 422

Query: 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
           A C  G+V E  E+  ++ + G+VPE  ++N LIS F +   FG   EL   M      P
Sbjct: 423 ALCQVGRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKP 482

Query: 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
           + +T+   IN   KS + ++A + +  +K +G VPD V    V+ GL K G LG A++++
Sbjct: 483 NGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKRVF 542

Query: 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
            E+   G+ P+  TY  MI    +    +EA ++  +M++       +  N+LI  L   
Sbjct: 543 HELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKA 602

Query: 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           GR DEA+ +F ++ +  +     TYNTL+ G  +EGK+
Sbjct: 603 GRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKV 640



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 160/343 (46%), Gaps = 18/343 (5%)

Query: 95  WLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCES 151
           W        PD V+   L D   +    +  M+    + + G++ N  +    I  LC+ 
Sbjct: 368 WKMKKSDQKPDRVTYITLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQV 427

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY-----HDLIESGYLI 206
           G + EA   F ++K+ G+     ++NS + G +K DR     +L+     H    +GY  
Sbjct: 428 GRVFEALEMFDEMKQKGIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGPKPNGYTH 487

Query: 207 QAFCND-GKVSEG------YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259
             F N  GK  E       YEL++     G+VP+  A N ++    +    G    + H 
Sbjct: 488 VLFINYYGKSGESIKAIQRYELMKS---KGIVPDVVAGNAVLFGLAKSGRLGMAKRVFHE 544

Query: 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319
           + A   +PD  TY  +I    K+ K  EA ++F D+ E   VPD ++  ++I  L K G 
Sbjct: 545 LKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLVVNSLIDTLYKAGR 604

Query: 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
             +A ++++++    L P + TYN+++ G  R   ++E   L +EM    Y    +TYNT
Sbjct: 605 GDEAWQIFYQLKEMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNT 664

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           ++  LC +G  ++A  +   M  KG   D+ +YNT+I G  KE
Sbjct: 665 ILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKE 707



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 145/317 (45%), Gaps = 12/317 (3%)

Query: 100  YGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEE 156
            +G S    S N L   LV+     +A      +   G  P+  +  L +  + +S  IEE
Sbjct: 828  FGVSLKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEE 887

Query: 157  AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQ 207
                  ++   G   +  T+N+ + G +K  R +    LY++L+  G+         L+ 
Sbjct: 888  MLKVQEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLD 947

Query: 208  AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
                 G++ +   L  ++LE G     T +N L++      N  +V  L   MV +   P
Sbjct: 948  GLLKAGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINP 1007

Query: 268  DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
            D  +Y  +I+ LCK+ +  +    F  L E G  PD + Y  +I GL K   L +A  ++
Sbjct: 1008 DIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLF 1067

Query: 328  FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387
             EM  KG++PN YTYNS+I    +     EA ++++E+L KG+     TYN LI G  + 
Sbjct: 1068 NEMQKKGIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVS 1127

Query: 388  GRTDEAYHLFEEMAQKG 404
            G TD AY  +  M   G
Sbjct: 1128 GSTDSAYAAYGRMIVGG 1144



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 101/415 (24%), Positives = 179/415 (43%), Gaps = 52/415 (12%)

Query: 56   RWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDS 115
            + ++ L+ D  +     P F +  L ++   ++   F Q      G   D  SC+ L + 
Sbjct: 719  QMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQP-----GSKTDRSSCHSLMEG 773

Query: 116  LVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172
            +++    + +++F   + S+G + +   L   I+ LC+     EA     K K  GV   
Sbjct: 774  ILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVSLK 833

Query: 173  IKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLR 223
              ++NS + G +  +  D+   L+ ++ E G          L+ A     ++ E  ++  
Sbjct: 834  TGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKVQE 893

Query: 224  QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
            ++   G       +N +IS   + +   +  +L + ++++  +P   TY  +++GL K+ 
Sbjct: 894  EMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAG 953

Query: 284  KRLEAYRVFN-----------------------------------DLKERGYVPDTVMYT 308
            +  +A  +FN                                   D+ ++G  PD   YT
Sbjct: 954  RIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYT 1013

Query: 309  TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
             +I  LCK G L D    + +++  GL P+  TYN +I G  +   LEEA  L  EM  K
Sbjct: 1014 IIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKK 1073

Query: 369  GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G      TYN+LI  L   G+  EA  ++EE+  KG   +V TYN LI+GY   G
Sbjct: 1074 GIVPNLYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSG 1128



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 161/374 (43%), Gaps = 47/374 (12%)

Query: 99   HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIE 155
            H  + P+L++ N + D L +  A   A+D L S    G  P+ +S    I  L +     
Sbjct: 652  HSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGLVKEERYN 711

Query: 156  EAFCAFSKLKEMGV---------------FGSIK--------------------TWNSAL 180
            EAF  F ++K++ +                G +K                    + +S +
Sbjct: 712  EAFSIFCQMKKVLIPDYATLCTILPSFVKIGLMKEALHIIKEYFLQPGSKTDRSSCHSLM 771

Query: 181  LGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLV 231
             G +K   T+   +    +  SG          LI+  C   K  E +EL+++    G+ 
Sbjct: 772  EGILKKAGTEKSIEFAEIIASSGITLDDFFLCPLIKHLCKQKKALEAHELVKKFKSFGVS 831

Query: 232  PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
             +  ++N LI    ++        L   M      PD FTY  +++ + KS +  E  +V
Sbjct: 832  LKTGSYNSLICGLVDENLIDIAEGLFAEMKELGCGPDEFTYNLLLDAMGKSMRIEEMLKV 891

Query: 292  FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
              ++  +GY    V Y T+I GL K   L  A  +++ ++ +G  P   TY  ++ G  +
Sbjct: 892  QEEMHRKGYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLK 951

Query: 352  IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
               +E+A+ L  EML+ G       YN L+ G  + G T++  HLF++M  +GI  D+ +
Sbjct: 952  AGRIEDAENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKS 1011

Query: 412  YNTLIQGYCKEGKI 425
            Y  +I   CK G++
Sbjct: 1012 YTIIIDTLCKAGQL 1025



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 82/318 (25%), Positives = 144/318 (45%), Gaps = 29/318 (9%)

Query: 107 VSCNVLFDSLVE-ARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163
            SCN + D + +  R   +A   D +       N  +       L   G +  A  A   
Sbjct: 170 ASCNYMLDLMRDHGRVGDMAEVFDVMQRQIVKANVGTFAAIFGGLGVEGGLRSAPVALPV 229

Query: 164 LKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLR 223
           +KE G+  +  T+N                 L + L++SG+  +A           E+ +
Sbjct: 230 MKEAGIVLNAYTYNG----------------LVYFLVKSGFDREAL----------EVYK 263

Query: 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283
            ++ DG+VP    ++ L+  F ++++   V  LL  M A    P+ ++Y   I  L ++R
Sbjct: 264 VMMVDGVVPSVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAR 323

Query: 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYN 343
           +  EAYR+  +++  G  PD + +T +I  LC  G + DA+ ++++M      P+  TY 
Sbjct: 324 RFDEAYRILAEMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYI 383

Query: 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403
           +++  +      +    +   M   GY +  V Y  +I  LC  GR  EA  +F+EM QK
Sbjct: 384 TLLDKFADNGESQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQK 443

Query: 404 GIFRDVITYNTLIQGYCK 421
           GI  +  +YN+LI G+ K
Sbjct: 444 GIVPEQYSYNSLISGFLK 461



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 150/349 (42%), Gaps = 31/349 (8%)

Query: 78  EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMD---FLDSTGF 134
           + L Q   V  ++  F  +    G  P+  S N L    ++A  F  A++   ++D  G 
Sbjct: 422 DALCQVGRVFEALEMFDEMKQK-GIVPEQYSYNSLISGFLKADRFGDALELFKYMDIHGP 480

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
            PN  +  L+I    +SG   +A   +  +K  G+   +   N+ L G  K  R  +  +
Sbjct: 481 KPNGYTHVLFINYYGKSGESIKAIQRYELMKSKGIVPDVVAGNAVLFGLAKSGRLGMAKR 540

Query: 195 LYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254
           ++H+L       +A                    G+ P+   +  +I    +   F    
Sbjct: 541 VFHEL-------KAM-------------------GVSPDTITYTMMIKCCSKASKFDEAV 574

Query: 255 ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           ++ + M+  N  PD      +I+ L K+ +  EA+++F  LKE    P    Y T++ GL
Sbjct: 575 KIFYDMIENNCVPDVLVVNSLIDTLYKAGRGDEAWQIFYQLKEMNLEPTDGTYNTLLAGL 634

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            + G + +   +  EM H    PN  TYN+++   C+   + +A  +   M  KG     
Sbjct: 635 GREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCIPDL 694

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            +YNT+I GL    R +EA+ +F +M +K +  D  T  T++  + K G
Sbjct: 695 SSYNTVIYGLVKEERYNEAFSIFCQM-KKVLIPDYATLCTILPSFVKIG 742



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 73/270 (27%), Positives = 112/270 (41%), Gaps = 49/270 (18%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G+    V+ N +   LV++R  + A+D    L S GFSP P +    +  L ++G IE+A
Sbjct: 899  GYESTYVTYNTIISGLVKSRRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLLKAGRIEDA 958

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
               F+++ E G   +   +N  L G      T+ V  L+ D+++ G          +I  
Sbjct: 959  ENLFNEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDT 1018

Query: 209  FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-------------SRFCEKKNFGRVSE 255
             C  G++++G    RQ+LE GL P+   +N LI             S F E +  G V  
Sbjct: 1019 LCKAGQLNDGLTYFRQLLEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPN 1078

Query: 256  L-------LHTMVARNRA---------------PDNFTYEEVINGLCKSRKRLEAYRVFN 293
            L       LH   A   A               P+ FTY  +I G   S     AY  + 
Sbjct: 1079 LYTYNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYG 1138

Query: 294  DLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
             +   G +P++   T  IH L K    GD+
Sbjct: 1139 RMIVGGCLPNSS--TCHIHELMKTFLKGDS 1166


>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
 gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 938

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 164/362 (45%), Gaps = 37/362 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G SPD+ + NVL  S  +      A+  L +   S +  +    I  LCE GL +EA+  
Sbjct: 124 GVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQF 183

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDR-------TDLVWKL------------------ 195
            S++ +MG+     ++N+ + G  K+          D + +L                  
Sbjct: 184 LSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTILLSSYYNLHAI 243

Query: 196 ---YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
              Y D++ SG+         +I   C  GKV EG  LLR++ E  + P +  +  L+  
Sbjct: 244 EEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDS 303

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             +   +     L   MV R    D   Y  +++GL K+    EA + F  L E   VP+
Sbjct: 304 LFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPN 363

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT ++ GLCK G L  A  +  +M+ K ++PN  TY+SMI+GY +   LEEA  L +
Sbjct: 364 VVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLR 423

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M D+       TY T+I GL   G+ + A  L +EM   G+  +    + L+    + G
Sbjct: 424 KMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIG 483

Query: 424 KI 425
           +I
Sbjct: 484 RI 485



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N++ +S     ++       D + S G  P+  S  + +  LCE+G +EEA
Sbjct: 568 GIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEA 627

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               +++  M +  ++ T+   L    K  R D ++K +  L+               S 
Sbjct: 628 IHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLL---------------SY 672

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G +L RQV           +N LI+  C+     + + ++  M AR   PD  T+  +++
Sbjct: 673 GIKLSRQV-----------YNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMH 721

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G        +A   ++ + E G  P+   Y T+I GL   G + +  K   EM  +G+ P
Sbjct: 722 GYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRP 781

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +++TYN++I G  +I N++ +  ++ EM+  G    T TYN LI+     G+  +A  L 
Sbjct: 782 DDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELL 841

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
           +EM ++G+  +  TY T+I G CK
Sbjct: 842 KEMGKRGVSPNTSTYCTMISGLCK 865



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF-EMIHKGLLPNEYTYNSMI 346
           A R  + +   G VPD+ ++ ++IH     G + D   + + +MI  G+ P+ +  N +I
Sbjct: 77  AARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLI 136

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           H +C++  L  A  L +   ++     TVTYNT+I+GLC HG  DEAY    EM + GI 
Sbjct: 137 HSFCKVGRLSFAISLLR---NRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGIL 193

Query: 407 RDVITYNTLIQGYCKEGKIV 426
            D ++YNTLI G+CK G  V
Sbjct: 194 PDTVSYNTLIDGFCKVGNFV 213



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 32/222 (14%)

Query: 229 GLVPENTAFNKLISRF-CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           G+VP++  +N LI +F        +VS +   M+A   +PD F    +I+  CK  +   
Sbjct: 88  GVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSF 147

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  +   L+ R    DTV Y TVI GLC+ G   +A +   EM+  G+LP+  +YN++I 
Sbjct: 148 AISL---LRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLID 204

Query: 348 GYCRIDNLEEAKRL----------------------------HKEMLDKGYGETTVTYNT 379
           G+C++ N   AK L                            +++M+  G+    VT+++
Sbjct: 205 GFCKVGNFVRAKALVDEISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSS 264

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +I  LC  G+  E   L  EM +  ++ + +TY TL+    K
Sbjct: 265 IINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFK 306



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 149/339 (43%), Gaps = 19/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   DLV   VL D L +A   R  +     L      PN  +    +  LC++G +  A
Sbjct: 324 GIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSA 383

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKLY-HDLIESGY----LIQA 208
               +++ E  V  ++ T++S + G +K     +   L+ K+   +++ +G+    +I  
Sbjct: 384 EFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDG 443

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
               GK     EL +++   G+   N   + L++     K  GR+ E   L+  MV++  
Sbjct: 444 LFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHL---KRIGRIKEVKGLVKDMVSKGV 500

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D   Y  +I+   K      A     +++ERG   D V Y  +I G+ K G +G A  
Sbjct: 501 TLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVG-ADW 559

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            +  M  KG+ P+  T+N M++   +  + E   +L  +M   G   + ++ N ++  LC
Sbjct: 560 AYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLC 619

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +G+ +EA H+  +M    I  ++ TY   +    K  +
Sbjct: 620 ENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKR 658


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/450 (23%), Positives = 183/450 (40%), Gaps = 52/450 (11%)

Query: 28  NLSIETKESQQLYTEIAKQVCKITRTKPRWE-----QTLLSDIPSFNFNDPLFFREFLKQ 82
           N  I++  ++  +    +  CK  + K   E      T+    P  +  D      F+ +
Sbjct: 28  NHEIQSHSNKTQFLNFMRNQCKSGKLKSIDEALNFFHTMAKMNPLPSVIDFTLLLGFIVK 87

Query: 83  QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPN 139
             +   +I   + +HS  G  PD    NV+ +SL   +        L +    G  P+  
Sbjct: 88  MKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVV 147

Query: 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD--------- 190
           +  + I  LC  G +  A      +++ G    +KT+   + G  K+ +T          
Sbjct: 148 TFTILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKM 207

Query: 191 ---------LVWKLYHD--------------------------LIESGYLIQAFCNDGKV 215
                    +V+    D                          L+    LIQ  CN G+ 
Sbjct: 208 EERNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRW 267

Query: 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV 275
            E   LL ++++ G++P+  + N L+   C++    +   ++  M+     PD FTY  +
Sbjct: 268 KEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSL 327

Query: 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           I+  C   +  EA RVF  +  RG +PD V YT++IHG CK+  +  A  +  EMI  G 
Sbjct: 328 IDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGF 387

Query: 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395
            P+  T+ ++I G+C++     AK L   M   G      T   ++ GLC      EA  
Sbjct: 388 TPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALS 447

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LF  M +  +  +++ Y+ ++ G C  GK+
Sbjct: 448 LFHAMEKSNLDLNIVIYSIILDGMCSAGKL 477



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/335 (24%), Positives = 156/335 (46%), Gaps = 12/335 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFL---DSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G+  D+ +  VL + L +      A+ +L   +   ++PN       +  LC+ GL+ EA
Sbjct: 176 GYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDGLCKDGLVSEA 235

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                ++   G+  ++ T+   + G     R      L  ++++ G          L+  
Sbjct: 236 LGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDV 295

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C +GK+ +   ++  ++  G VP+   +N LI R+C +      + +   MV+R   PD
Sbjct: 296 LCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPD 355

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              Y  +I+G CK +   +A  + +++ + G+ PD V +TT+I G C++G    A++++ 
Sbjct: 356 IVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFL 415

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
            M   G +PN  T   ++ G C+   L EA  L   M         V Y+ ++ G+C  G
Sbjct: 416 NMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAG 475

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           + + A  LF  +  KG+  +V  Y  +I G+ K+G
Sbjct: 476 KLNTALELFSCLPAKGLQINVYAYTIMINGFAKQG 510



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 12/331 (3%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLI 154
           S  G  P+LV+   L   L     +K A   LD     G  P+  SL + +  LC+ G I
Sbjct: 243 SGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKI 302

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSAL-LGCIK--IDRTDLVWKLY------HDLIESGYL 205
            +A      +  +G    + T+NS +   C++  +D    V++L        D++    L
Sbjct: 303 MQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSL 362

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           I  +C    +++   LL ++++ G  P+   +  LI  FC+        EL   M    +
Sbjct: 363 IHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQ 422

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            P+  T   +++GLCKS+   EA  +F+ +++     + V+Y+ ++ G+C  G L  A +
Sbjct: 423 VPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALE 482

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++  +  KGL  N Y Y  MI+G+ +   L++A+ L   M + G    + TYN  + GL 
Sbjct: 483 LFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLV 542

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
                  +      M  KG   D  T   +I
Sbjct: 543 AEREIARSIKYLTMMRDKGFSVDATTTEMII 573



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/198 (33%), Positives = 98/198 (49%)

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           G+ P+    N +I+  C  K       +L TM+     P   T+  +INGLC       A
Sbjct: 106 GIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRA 165

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
             + + +++ GY  D   Y  +I+GLCKMG   +A     +M  +   PN   Y++++ G
Sbjct: 166 VELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEERNWNPNVVVYSTVMDG 225

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
            C+   + EA  L  EM  KG     VTY  LI GLC  GR  EA  L +EM + G+  D
Sbjct: 226 LCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPD 285

Query: 409 VITYNTLIQGYCKEGKIV 426
           + + N L+   CKEGKI+
Sbjct: 286 LQSLNILVDVLCKEGKIM 303



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 108/266 (40%), Gaps = 15/266 (5%)

Query: 61  LLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120
           L+ ++P     + L  R  L  QN +  + R F+ + S  G  PD+V+   L     + +
Sbjct: 314 LVGEVPDVFTYNSLIDRYCL--QNQMDEATRVFELMVSR-GCLPDIVAYTSLIHGWCKIK 370

Query: 121 AFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN 177
               AM  LD     GF+P+  +    I   C+ G    A   F  + + G   +++T  
Sbjct: 371 NINKAMHLLDEMIKVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCA 430

Query: 178 SALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLED 228
             L G  K         L+H + +S           ++   C+ GK++   EL   +   
Sbjct: 431 IILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAK 490

Query: 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           GL     A+  +I+ F ++    +  +LL  M      PD+ TY   + GL   R+   +
Sbjct: 491 GLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARS 550

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGL 314
            +    ++++G+  D      +I+ L
Sbjct: 551 IKYLTMMRDKGFSVDATTTEMIINYL 576



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 47/294 (15%)

Query: 101 GFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PDL S N+L D L +       K  + F+   G  P+  +    I   C    ++EA
Sbjct: 281 GVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLIDRYCLQNQMDEA 340

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
              F  +   G    I  + S + G  KI   +    L  ++I+ G+         LI  
Sbjct: 341 TRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVTWTTLIGG 400

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  G+     EL   + + G VP       ++   C+ +       L H M   N   +
Sbjct: 401 FCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLN 460

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFN----------------------------------- 293
              Y  +++G+C + K   A  +F+                                   
Sbjct: 461 IVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLS 520

Query: 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           +++E G +PD+  Y   + GL     +  + K    M  KG   +  T   +I+
Sbjct: 521 NMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGFSVDATTTEMIIN 574


>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g14770, mitochondrial; Flags: Precursor
          Length = 940

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/362 (28%), Positives = 164/362 (45%), Gaps = 37/362 (10%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G SPD+ + NVL  S  +      A+  L +   S +  +    I  LCE GL +EA+  
Sbjct: 126 GVSPDVFALNVLIHSFCKVGRLSFAISLLRNRVISIDTVTYNTVISGLCEHGLADEAYQF 185

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDR-------TDLVWKL------------------ 195
            S++ +MG+     ++N+ + G  K+          D + +L                  
Sbjct: 186 LSEMVKMGILPDTVSYNTLIDGFCKVGNFVRAKALVDEISELNLITHTILLSSYYNLHAI 245

Query: 196 ---YHDLIESGY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
              Y D++ SG+         +I   C  GKV EG  LLR++ E  + P +  +  L+  
Sbjct: 246 EEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDS 305

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
             +   +     L   MV R    D   Y  +++GL K+    EA + F  L E   VP+
Sbjct: 306 LFKANIYRHALALYSQMVVRGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPN 365

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            V YT ++ GLCK G L  A  +  +M+ K ++PN  TY+SMI+GY +   LEEA  L +
Sbjct: 366 VVTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLR 425

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M D+       TY T+I GL   G+ + A  L +EM   G+  +    + L+    + G
Sbjct: 426 KMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHLKRIG 485

Query: 424 KI 425
           +I
Sbjct: 486 RI 487



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/324 (26%), Positives = 153/324 (47%), Gaps = 29/324 (8%)

Query: 101 GFSPDLVSCNVLFDSLV---EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+ + N++ +S     ++       D + S G  P+  S  + +  LCE+G +EEA
Sbjct: 570 GIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEA 629

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217
               +++  M +  ++ T+   L    K  R D ++K +  L+               S 
Sbjct: 630 IHILNQMMLMEIHPNLTTYRIFLDTSSKHKRADAIFKTHETLL---------------SY 674

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
           G +L RQV           +N LI+  C+     + + ++  M AR   PD  T+  +++
Sbjct: 675 GIKLSRQV-----------YNTLIATLCKLGMTKKAAMVMGDMEARGFIPDTVTFNSLMH 723

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G        +A   ++ + E G  P+   Y T+I GL   G + +  K   EM  +G+ P
Sbjct: 724 GYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAGLIKEVDKWLSEMKSRGMRP 783

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           +++TYN++I G  +I N++ +  ++ EM+  G    T TYN LI+     G+  +A  L 
Sbjct: 784 DDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVLISEFANVGKMLQARELL 843

Query: 398 EEMAQKGIFRDVITYNTLIQGYCK 421
           +EM ++G+  +  TY T+I G CK
Sbjct: 844 KEMGKRGVSPNTSTYCTMISGLCK 867



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 79/140 (56%), Gaps = 4/140 (2%)

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF-EMIHKGLLPNEYTYNSMI 346
           A R  + +   G VPD+ ++ ++IH     G + D   + + +MI  G+ P+ +  N +I
Sbjct: 79  AARTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLI 138

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
           H +C++  L  A  L +   ++     TVTYNT+I+GLC HG  DEAY    EM + GI 
Sbjct: 139 HSFCKVGRLSFAISLLR---NRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGIL 195

Query: 407 RDVITYNTLIQGYCKEGKIV 426
            D ++YNTLI G+CK G  V
Sbjct: 196 PDTVSYNTLIDGFCKVGNFV 215



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 105/222 (47%), Gaps = 32/222 (14%)

Query: 229 GLVPENTAFNKLISRF-CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           G+VP++  +N LI +F        +VS +   M+A   +PD F    +I+  CK  +   
Sbjct: 90  GVVPDSRLWNSLIHQFNVNGLVHDQVSLIYSKMIACGVSPDVFALNVLIHSFCKVGRLSF 149

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  +   L+ R    DTV Y TVI GLC+ G   +A +   EM+  G+LP+  +YN++I 
Sbjct: 150 AISL---LRNRVISIDTVTYNTVISGLCEHGLADEAYQFLSEMVKMGILPDTVSYNTLID 206

Query: 348 GYCRIDNLEEAKRL----------------------------HKEMLDKGYGETTVTYNT 379
           G+C++ N   AK L                            +++M+  G+    VT+++
Sbjct: 207 GFCKVGNFVRAKALVDEISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSS 266

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +I  LC  G+  E   L  EM +  ++ + +TY TL+    K
Sbjct: 267 IINRLCKGGKVLEGGLLLREMEEMSVYPNHVTYTTLVDSLFK 308



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 149/339 (43%), Gaps = 19/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEA---RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   DLV   VL D L +A   R  +     L      PN  +    +  LC++G +  A
Sbjct: 326 GIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVVTYTALVDGLCKAGDLSSA 385

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVWKLY-HDLIESGY----LIQA 208
               +++ E  V  ++ T++S + G +K     +   L+ K+   +++ +G+    +I  
Sbjct: 386 EFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEAVSLLRKMEDQNVVPNGFTYGTVIDG 445

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSE---LLHTMVARNR 265
               GK     EL +++   G+   N   + L++     K  GR+ E   L+  MV++  
Sbjct: 446 LFKAGKEEMAIELSKEMRLIGVEENNYILDALVNHL---KRIGRIKEVKGLVKDMVSKGV 502

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D   Y  +I+   K      A     +++ERG   D V Y  +I G+ K G +G A  
Sbjct: 503 TLDQINYTSLIDVFFKGGDEEAALAWAEEMQERGMPWDVVSYNVLISGMLKFGKVG-ADW 561

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
            +  M  KG+ P+  T+N M++   +  + E   +L  +M   G   + ++ N ++  LC
Sbjct: 562 AYKGMREKGIEPDIATFNIMMNSQRKQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLC 621

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            +G+ +EA H+  +M    I  ++ TY   +    K  +
Sbjct: 622 ENGKMEEAIHILNQMMLMEIHPNLTTYRIFLDTSSKHKR 660


>gi|307136214|gb|ADN34051.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 653

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/451 (26%), Positives = 207/451 (45%), Gaps = 73/451 (16%)

Query: 43  IAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGF 102
           I K +C +   + RW+   L  + S +  + L  R   + +N+  L++ F+ W+ +   F
Sbjct: 33  IYKAIC-VNLKQRRWK--FLEQV-SPSLTNSLVCRVVREFRNSPQLALEFYNWVEARDNF 88

Query: 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS----TGFSP----------------NPNSLE 142
           S  L SC  L   LV +R F  A+  ++S     G SP                NP   +
Sbjct: 89  SHSLESCCTLVHVLVNSRNFNDALSIMESLMLKNGKSPLEVLGGLMNSYEICNSNPAVFD 148

Query: 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202
             ++   +   +E A+    KL+  G + +I  WN+ L   +K+  TD  W +Y +++ S
Sbjct: 149 ALVRTCTQLKSVEGAYDVIRKLRLEGFWVTIHAWNNFLNLLLKLGETDKFWNMYMEMVAS 208

Query: 203 GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI---SRFCEKKNF 250
           GY         +I A C + K+ E   ++  +L+  + P   +FN +I   S+  E    
Sbjct: 209 GYSENVNTFNLIIYALCKECKLLEAISVVYLMLKIEIWPNVVSFNMIIDKASKMGEMDLA 268

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE----------------------- 287
            +++     +   + +P+  TY  +ING CK R RLE                       
Sbjct: 269 LKLTRNTEVISGGSVSPNIVTYNCIINGFCKIR-RLESAKNVLAEMIKLGIDSNERTYAP 327

Query: 288 -------------AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334
                        A+R+ +++ E   +PDTV+Y ++I+ L   G L +A  +  +MI++ 
Sbjct: 328 LIDGYARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYWLYIEGELEEASFLLSDMINRR 387

Query: 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394
           +LP+E+TY+ +  G C   +L +A R+H  ++++   +   T+N LI  +        A 
Sbjct: 388 ILPDEFTYSILTKGLCLSGHLNKALRVHYYIVERNLVKDAYTHNILINYMFQSRNIAGAK 447

Query: 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            L   M  +GI  D++TY TL+ G+CKEGKI
Sbjct: 448 QLLSSMIVRGIKPDMVTYGTLVAGHCKEGKI 478



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 152/342 (44%), Gaps = 48/342 (14%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAF----------------------SKLKEM- 167
           ++G+S N N+  L I  LC+   + EA                          SK+ EM 
Sbjct: 207 ASGYSENVNTFNLIIYALCKECKLLEAISVVYLMLKIEIWPNVVSFNMIIDKASKMGEMD 266

Query: 168 ---------------GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
                           V  +I T+N  + G  KI R +    +  ++I+ G         
Sbjct: 267 LALKLTRNTEVISGGSVSPNIVTYNCIINGFCKIRRLESAKNVLAEMIKLGIDSNERTYA 326

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI  +   G +   + L  +++E  L+P+   +N LI     +      S LL  M+ R
Sbjct: 327 PLIDGYARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYWLYIEGELEEASFLLSDMINR 386

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD FTY  +  GLC S    +A RV   + ER  V D   +  +I+ + +   +  A
Sbjct: 387 RILPDEFTYSILTKGLCLSGHLNKALRVHYYIVERNLVKDAYTHNILINYMFQSRNIAGA 446

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +++   MI +G+ P+  TY +++ G+C+   +E A +++ + +        V YN+++ G
Sbjct: 447 KQLLSSMIVRGIKPDMVTYGTLVAGHCKEGKIEAAVQIYDKTVKADGKSNLVVYNSILDG 506

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           LC  G  D A  L +++ Q G F D +TYNTL+ G+C  G++
Sbjct: 507 LCKQGSIDAARLLVDKLQQNG-FLDSVTYNTLLHGFCVNGEV 547



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 166/337 (49%), Gaps = 16/337 (4%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST------GFSPNPNSLELYIQCLCESGLIEEA 157
           P++VS N++ D   +     +A+    +T        SPN  +    I   C+   +E A
Sbjct: 247 PNVVSFNMIIDKASKMGEMDLALKLTRNTEVISGGSVSPNIVTYNCIINGFCKIRRLESA 306

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQA 208
               +++ ++G+  + +T+   + G  +    D+ ++L  +++E+           LI  
Sbjct: 307 KNVLAEMIKLGIDSNERTYAPLIDGYARKGSLDVAFRLCDEMVETRLIPDTVVYNSLIYW 366

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              +G++ E   LL  ++   ++P+   ++ L    C   +  +   + + +V RN   D
Sbjct: 367 LYIEGELEEASFLLSDMINRRILPDEFTYSILTKGLCLSGHLNKALRVHYYIVERNLVKD 426

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +IN + +SR    A ++ + +  RG  PD V Y T++ G CK G +  A +++ 
Sbjct: 427 AYTHNILINYMFQSRNIAGAKQLLSSMIVRGIKPDMVTYGTLVAGHCKEGKIEAAVQIYD 486

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           + +      N   YNS++ G C+  +++ A+ L  ++   G+ ++ VTYNTL+ G C++G
Sbjct: 487 KTVKADGKSNLVVYNSILDGLCKQGSIDAARLLVDKLQQNGFLDS-VTYNTLLHGFCVNG 545

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             ++A+ LF EM   G   ++++YN +I   CK G I
Sbjct: 546 EVEKAFALFLEMINVGSLVNIVSYNIMINFLCKMGLI 582


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 70/229 (30%), Positives = 123/229 (53%)

Query: 197 HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
           HD++    L+   C +G+V E   L+ +++E+G  P    +  +++  C+  +      L
Sbjct: 8   HDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNL 67

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           L  M   +   D   Y  +I+ LCK     +A  +F ++ ++G  P+ + Y  +I G C 
Sbjct: 68  LRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCS 127

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
            G   DA ++  +MI   + P+  T+N++I+ + +   + EA+ L++EML +     T+T
Sbjct: 128 YGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTIT 187

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           YN+LI G C H R D+A H+F+ M  KG   +VIT NTLI G C+  ++
Sbjct: 188 YNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRV 236



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 67/223 (30%), Positives = 115/223 (51%)

Query: 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
           G ++   C  G       LLR++ E  +  +   +  +I R C+  +  +   L   M  
Sbjct: 49  GTIVNGMCKMGDTDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHD 108

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           +   P+  TY  +I+G C   K  +A ++  D+ E    PD V +  +I+   K G + +
Sbjct: 109 KGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISE 168

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382
           A +++ EM+ + + P+  TYNS+I G+C+   L++AK +   M+ KG     +T NTLI 
Sbjct: 169 AEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIG 228

Query: 383 GLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           G C   R D+   L  EM ++G+  D ++YNTLI G+C+ G +
Sbjct: 229 GCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDL 271



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 126/265 (47%), Gaps = 9/265 (3%)

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----- 202
           LC  G + EA     ++ E G   +  T+ + + G  K+  TD    L   + ES     
Sbjct: 20  LCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLRKMDESHIKAD 79

Query: 203 ----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 +I   C DG  S+   L  ++ + G+ P    +N +I   C    +    +LL 
Sbjct: 80  VVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLR 139

Query: 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
            M+  N  PD  T+  +IN   K  K  EA  ++ ++  R   PDT+ Y ++I G CK  
Sbjct: 140 DMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHS 199

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            L DA+ ++  M+ KG  PN  T N++I G CR   +++  +L  EML +G    +V+YN
Sbjct: 200 RLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYN 259

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQK 403
           TLI G C  G  + A  LF+EM  +
Sbjct: 260 TLIHGFCQAGDLNAAQDLFQEMISQ 284



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 68/201 (33%), Positives = 102/201 (50%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++E G   +  AFN L++  C +        L+  MV     P+  TY  ++NG+CK   
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
              A  +   + E     D V+YT +I  LCK G    A+ ++ EM  KG+ PN  TYN 
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNC 120

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           MI G C      +A++L ++M++       VT+N LI      G+  EA  L+ EM  + 
Sbjct: 121 MIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRN 180

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           IF D ITYN+LI G+CK  ++
Sbjct: 181 IFPDTITYNSLIDGFCKHSRL 201



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 135/280 (48%), Gaps = 12/280 (4%)

Query: 101 GFSPDLVSCNVLFDSLV-EARAFKVA--MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G   D+V+ N L + L  E R  +    +D +   G  PN  +    +  +C+ G  + A
Sbjct: 5   GCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSA 64

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
                K+ E  +   +  + + +    K         L+ ++ + G          +I  
Sbjct: 65  LNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDG 124

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C+ GK ++  +LLR ++E  + P+   FN LI+ F ++       EL   M+ RN  PD
Sbjct: 125 CCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFPD 184

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  +I+G CK  +  +A  +F+ +  +G  P+ +   T+I G C+   + D  K+  
Sbjct: 185 TITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLLH 244

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368
           EM+ +GL+P+  +YN++IHG+C+  +L  A+ L +EM+ +
Sbjct: 245 EMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMISQ 284



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 82/187 (43%), Gaps = 15/187 (8%)

Query: 92  FFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQC 147
            F  +H   G  P++++ N + D          A ++  D ++S    P+  +    I  
Sbjct: 102 LFTEMHDK-GIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESN-VDPDVVTFNALINA 159

Query: 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---- 203
             + G I EA   + ++    +F    T+NS + G  K  R D    ++  ++  G    
Sbjct: 160 FVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPN 219

Query: 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                 LI   C   +V +G +LL ++L  GLVP++ ++N LI  FC+  +     +L  
Sbjct: 220 VITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQ 279

Query: 259 TMVARNR 265
            M+++ R
Sbjct: 280 EMISQVR 286


>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 647

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 147/338 (43%), Gaps = 12/338 (3%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  P L S N L + LV ++  + A    + +++    P+  +    I+  CE G   +A
Sbjct: 209 GIEPSLFSYNFLVNGLVNSKFIESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKA 268

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQA 208
           F     ++   V     T+ + +  C      D    LYH++ E G          +I  
Sbjct: 269 FEKLKAMELRNVAPDKITYMTLIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGG 328

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
            C DGK  EGY +   ++  G       +  LI    +  N G    L   M      PD
Sbjct: 329 LCKDGKRVEGYTVFENMISKGCKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPD 388

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
             TY  ++N LCKS +  EA         +G   + + Y+++I GL K G + +A ++++
Sbjct: 389 EVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFY 448

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ KG  P+ Y YN++I    +   ++EA  L K M   G  +T  TY  LI GL    
Sbjct: 449 EMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREH 508

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
           R +EA  L++ M  KGI      +  L  G C  GK+ 
Sbjct: 509 RNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVA 546



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/354 (28%), Positives = 164/354 (46%), Gaps = 20/354 (5%)

Query: 88  LSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-------GFSPNPNS 140
           ++IRFF W      ++ +L  C V   SL++  A    +D + S        G      S
Sbjct: 126 VAIRFFTWAGKQKKYTHNL-ECYV---SLIDVLATNGVLDSVKSVFSKFKEMGLIMTVYS 181

Query: 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK---IDRTDLVW---- 193
               I+     G++EE    + ++KE G+  S+ ++N  + G +    I+  + V+    
Sbjct: 182 SNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERVFEVME 241

Query: 194 --KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251
             K+  D++    +I+ +C  GK  + +E L+ +    + P+   +  LI     + +F 
Sbjct: 242 NGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFD 301

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
               L H M  +        Y  VI GLCK  KR+E Y VF ++  +G   +  +YT +I
Sbjct: 302 SCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKGCKANVAIYTALI 361

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
               K G +G+A  ++  M  +GL P+E TY  +++  C+   L+EA    +    KG  
Sbjct: 362 DSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVA 421

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              + Y++LI GL   GR DEA  +F EM +KG   D   YN LI    K GKI
Sbjct: 422 VNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDALAKCGKI 475



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 6/155 (3%)

Query: 277 NGLCKSRKRL----EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332
           N L KS   L    E   V+  +KE G  P    Y  +++GL    ++  A ++ FE++ 
Sbjct: 183 NSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKFIESAERV-FEVME 241

Query: 333 KGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            G + P+  TYN+MI GYC +    +A    K M  +      +TY TLI      G  D
Sbjct: 242 NGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMTLIQACYAEGDFD 301

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
               L+ EM +KG+      Y+ +I G CK+GK V
Sbjct: 302 SCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRV 336



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 97/230 (42%), Gaps = 13/230 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD V+  V+ +SL ++     A   M+F    G + N       I  L +SG ++EA
Sbjct: 384 GLEPDEVTYGVIVNSLCKSGRLDEALEYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEA 443

Query: 158 FCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKLY------HDLIESGYLIQA 208
              F ++ + G       +N+   AL  C KID    + K          +     LI  
Sbjct: 444 ERIFYEMVKKGCPPDSYCYNALIDALAKCGKIDEALALSKRMEVDGCDQTVYTYTILITG 503

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              + +  E   L   +++ G+ P   AF  L +  C      R  ++L  M      P+
Sbjct: 504 LFREHRNEEALTLWDLMIDKGITPTAAAFRALSTGLCLSGKVARACKILDEMAPMGVIPE 563

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318
              ++++IN LCK+ +  EA ++ + + +RG      + T +I+ L K G
Sbjct: 564 T-AFDDMINILCKAGRIKEACKLADGIVDRGREIPGRVRTVLINALRKAG 612


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/329 (26%), Positives = 150/329 (45%), Gaps = 31/329 (9%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           G S  +++ N + +    A     A   +DS  F+P+  +    I+ LC  G + +A   
Sbjct: 123 GPSATIITYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAV 182

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220
           F  +   G   S+ T++                           L+ A C +    +   
Sbjct: 183 FDDMLHRGCSPSVVTYS--------------------------ILLDATCKESGYKQAVV 216

Query: 221 LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280
           LL ++   G  P+   +N LI+  C + + G   ++L+++ +    PD  TY  V+  LC
Sbjct: 217 LLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLC 276

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
            S +  EA ++   +      PD V +  VI  LC+ G++G A K+  +M   G  P+  
Sbjct: 277 SSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDII 336

Query: 341 TYNSMIHGYCRIDNLEEAKRLHK----EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           TY+S++ G C+   ++EA +L K    EM+ K      VT+NT+I  LC  G  D A  +
Sbjct: 337 TYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKV 396

Query: 397 FEEMAQKGIFRDVITYNTLIQGY-CKEGK 424
            +EM++ G   D+ TYN ++ G+ CK  K
Sbjct: 397 VDEMSEHGCIPDITTYNCIVDGFLCKSCK 425



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 153/342 (44%), Gaps = 17/342 (4%)

Query: 99  HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIE 155
           H G SP +V+ ++L D+  +   +K A+  LD   S G  P+  +  + I  +C  G + 
Sbjct: 188 HRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVG 247

Query: 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR----TDLVWKLYH-----DLIESGYLI 206
           EA    + L   G      T+   L      +R      L+ K++      D +    +I
Sbjct: 248 EALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVI 307

Query: 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR----VSELLHTMVA 262
            + C  G V    ++L Q+ E G  P+   ++ ++   C+++        + ELL  MV+
Sbjct: 308 TSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVS 367

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-LCKMGWLG 321
           +N  PD  T+  +I  LC+      A +V +++ E G +PD   Y  ++ G LCK     
Sbjct: 368 KNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTE 427

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  +   M+  GL P+  TY S+  G  R D +E A  + + +   G     + YN ++
Sbjct: 428 EALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAIL 487

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            GLC   RTD A   F  M   G   D  TY  L++G   EG
Sbjct: 488 LGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEG 529



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 138/305 (45%), Gaps = 13/305 (4%)

Query: 129 LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           +  +G  P      + I+ LC  G + +A      ++ +G   +I T+N+ + G  +   
Sbjct: 87  ISGSGKDPAVIPCNILIKKLCADGRVADAE---RVVEALGPSATIITYNTMVNGYCRAGN 143

Query: 189 TDLVWKLYH------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLIS 242
            D   ++        D      LI+A C  G V +   +   +L  G  P    ++ L+ 
Sbjct: 144 IDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLD 203

Query: 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302
             C++  + +   LL  M ++   PD  TY  +IN +C      EA +V N L   G  P
Sbjct: 204 ATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKP 263

Query: 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362
           D V YT V+  LC      +A K+  +M      P+E T+N++I   C+   +  A ++ 
Sbjct: 264 DAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATKVL 323

Query: 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE----EMAQKGIFRDVITYNTLIQG 418
            +M + G     +TY++++ GLC   R DEA  L +    EM  K    D +T+NT+I  
Sbjct: 324 AQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITS 383

Query: 419 YCKEG 423
            C++G
Sbjct: 384 LCQKG 388



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 126/295 (42%), Gaps = 54/295 (18%)

Query: 177 NSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLE 227
           N  L G ++    D   +L H +  SG          LI+  C DG+V++   ++     
Sbjct: 65  NRRLRGLVQRGELDGALRLVHSISGSGKDPAVIPCNILIKKLCADGRVADAERVV----- 119

Query: 228 DGLVPENT--AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285
           + L P  T   +N +++ +C   N      ++ ++     APD FTY  +I  LC     
Sbjct: 120 EALGPSATIITYNTMVNGYCRAGNIDAARRMIDSV---PFAPDTFTYNPLIRALCVRGCV 176

Query: 286 LEAYRVFNDL--------------------KERGYV---------------PDTVMYTTV 310
           L+A  VF+D+                    KE GY                PD V Y  +
Sbjct: 177 LDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVL 236

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I+ +C  G +G+A K+   +   G  P+  TY  ++   C  +  EEA +L  +M     
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               VT+N +I  LC  G    A  +  +M++ G   D+ITY++++ G CKE ++
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRV 351



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 138/324 (42%), Gaps = 27/324 (8%)

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNP 138
            Q +V  +++    L S YG  PD V+   +  SL  +  ++ A   L    S   +P+ 
Sbjct: 242 SQGDVGEALKVLNSLPS-YGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDE 300

Query: 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198
            +    I  LC+ G +  A    +++ E G    I T++S + G  K  R D   KL   
Sbjct: 301 VTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLK- 359

Query: 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258
                                ELL +++    +P+   FN +I+  C+K  F R  +++ 
Sbjct: 360 ---------------------ELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVD 398

Query: 259 TMVARNRAPDNFTYEEVING-LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
            M      PD  TY  +++G LCKS K  EA  + N +   G  PDT  Y ++  GL + 
Sbjct: 399 EMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSRE 458

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377
             +  A  M+  +   GL P++  YN+++ G C+    + A      M+  G      TY
Sbjct: 459 DEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTY 518

Query: 378 NTLIAGLCLHGRTDEAYHLFEEMA 401
             L+ G+   G  +EA  L   ++
Sbjct: 519 IILVEGIAYEGFLEEAKELLGNLS 542


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 160/332 (48%), Gaps = 27/332 (8%)

Query: 120 RAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179
           +A+ V  + + S GF P+ ++    I  LC +  +E+AF  F ++K  G+   + T+ + 
Sbjct: 105 KAYNVIREMM-SKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTL 163

Query: 180 LLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVLEDGL 230
           L    K+   +     + ++ + G          LI A+    K+S   E+   +L +G 
Sbjct: 164 LDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGC 223

Query: 231 VPENTAFNKLISRFC-----------------EKKNFGRVSELLHTMVARNRAPDNFTYE 273
           VP    +  LI   C                 +K +   V      + +  + P+  TY 
Sbjct: 224 VPNIVTYTALIDGHCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYG 283

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +++GLCK+ K  EA  +   +   G  P+ ++Y  +I G CK+G L +A++++ +M+  
Sbjct: 284 ALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGH 343

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
           G  PN YTY+S+I    +   L+ A ++  +ML+       V Y  ++ GLC  G+TDEA
Sbjct: 344 GCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEA 403

Query: 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           Y L   M +KG + +V+TY  +I G+ K G++
Sbjct: 404 YRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRV 435



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 149/331 (45%), Gaps = 24/331 (7%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLD---STGFSPNPNSLELYIQCLCESGLIEEA 157
           G +P++V+   L  + ++ R    A +  +   S G  PN  +    I   C++G  E+A
Sbjct: 187 GCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKA 246

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH------DLIESGYLIQAFCN 211
              ++++K   V                I   D+ +++        +++  G L+   C 
Sbjct: 247 CQIYARMKNDKV---------------DIPDVDIYFRIVDSELKEPNVVTYGALVDGLCK 291

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             KV E  +LL  +  +G  P    ++ LI  FC+        E+   M+    +P+ +T
Sbjct: 292 AHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYT 351

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ L K ++   A +V   + E    P+ V+YT ++ GLCK+G   +A ++   M 
Sbjct: 352 YSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMME 411

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KG  PN  TY +MI G+ +   ++    L + M  KG     +TY  LI   C  G  D
Sbjct: 412 EKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLD 471

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           +A+ L EEM Q    + +  Y  +I+G+  E
Sbjct: 472 DAHKLLEEMKQTYWPKHIGMYRKVIEGFSHE 502



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 154/330 (46%), Gaps = 38/330 (11%)

Query: 131 STGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW--NSALLGCI---- 184
           + G  P+P      +   C SG   + F A+  LK+M + G    +   + L+G I    
Sbjct: 4   TEGCYPSPMIFNSLVHAYCRSG---DYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTE 60

Query: 185 ---KIDRTDLVWKLYHDLIESGYLI---------QAFCNDGKVSEGYELLRQVLEDGLVP 232
               ++   L  + Y++++E G ++         +  C  GK  + Y ++R+++  G +P
Sbjct: 61  DLPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIP 120

Query: 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292
           +++ ++K+I   C      +  +L   M      PD +TY  +++  CK     +A   F
Sbjct: 121 DSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWF 180

Query: 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352
           +++++ G  P+ V YT +IH   K   L  A +++  M+  G +PN  TY ++I G+C+ 
Sbjct: 181 DEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKA 240

Query: 353 DNLEEAKRLHKEM----------------LDKGYGE-TTVTYNTLIAGLCLHGRTDEAYH 395
              E+A +++  M                +D    E   VTY  L+ GLC   +  EA  
Sbjct: 241 GETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARD 300

Query: 396 LFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           L E M+ +G   + I Y+ LI G+CK GK+
Sbjct: 301 LLETMSLEGCEPNQIIYDALIDGFCKVGKL 330



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 146/352 (41%), Gaps = 29/352 (8%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
           GF PD  + + +   L  A   + A      +   G +P+  +    +   C+ GLIE+A
Sbjct: 117 GFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQA 176

Query: 158 FCAFSKLKEMGVFGSIKTWNS---ALLGCIKIDRTDLVWKL------YHDLIESGYLIQA 208
              F ++++ G   ++ T+ +   A L   K+ R + ++++        +++    LI  
Sbjct: 177 RNWFDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDG 236

Query: 209 FCNDGKVSEGYELLRQVLEDGL-----------------VPENTAFNKLISRFCEKKNFG 251
            C  G+  +  ++  ++  D +                  P    +  L+   C+     
Sbjct: 237 HCKAGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVK 296

Query: 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311
              +LL TM      P+   Y+ +I+G CK  K  EA  VF  +   G  P+   Y+++I
Sbjct: 297 EARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLI 356

Query: 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371
             L K   L  A K+  +M+     PN   Y  M+ G C++   +EA RL   M +KG  
Sbjct: 357 DKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCY 416

Query: 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              VTY  +I G    GR D    L + M  KG   + ITY  LI   C  G
Sbjct: 417 PNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAG 468



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 150/335 (44%), Gaps = 19/335 (5%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P++V+   L D L +A   K A D L++    G  PN    +  I   C+ G ++EA   
Sbjct: 277 PNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEV 336

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
           F+K+   G   ++ T++S +    K  R DL  K+   ++E+           ++   C 
Sbjct: 337 FTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCK 396

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
            GK  E Y L+  + E G  P    +  +I  F +     R  ELL  M ++  AP+  T
Sbjct: 397 VGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFIT 456

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK--MGWLGDARKMWFE 329
           Y  +IN  C +    +A+++  ++K+  +     MY  VI G     +  LG    +  E
Sbjct: 457 YRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLG----LLAE 512

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           +   G +P    Y  +I  + +   LE A  LH+E L         TY +LI  L L  +
Sbjct: 513 LSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEE-LSSFSAAYQNTYVSLIESLTLACK 571

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
            D+A+ L+ +M ++G   ++     LI+G  + GK
Sbjct: 572 VDKAFKLYSDMTRRGFVPELSMLVCLIKGLLRVGK 606



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 6/207 (2%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           ++ +G  P    FN L+  +C   ++    +LL  MV     P    Y  +I G+C +  
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 285 --RLE----AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338
              +E    A R +N++ E G V + V        LC +G    A  +  EM+ KG +P+
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPD 121

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398
             TY+ +I   C    +E+A +L +EM   G      TY TL+   C  G  ++A + F+
Sbjct: 122 SSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFD 181

Query: 399 EMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EM Q G   +V+TY  LI  Y K  K+
Sbjct: 182 EMQQDGCAPNVVTYTALIHAYLKTRKL 208



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 108/264 (40%), Gaps = 46/264 (17%)

Query: 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEE 156
           +G SP++ + + L D L + +   +A+  L        +PN       +  LC+ G  +E
Sbjct: 343 HGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDE 402

Query: 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQ 207
           A+     ++E G + ++ T+ + + G  K  R D   +L   +   G          LI 
Sbjct: 403 AYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLIN 462

Query: 208 AFCNDG-------------------------KVSEGYE--------LLRQVLEDGLVPEN 234
             C  G                         KV EG+         LL ++ EDG VP  
Sbjct: 463 HCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHEFVASLGLLAELSEDGSVPIL 522

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
             +  LI  F +        EL   + + + A  N TY  +I  L  + K  +A+++++D
Sbjct: 523 PVYKLLIDNFIKAGRLEMALELHEELSSFSAAYQN-TYVSLIESLTLACKVDKAFKLYSD 581

Query: 295 LKERGYVPDTVMYTTVIHGLCKMG 318
           +  RG+VP+  M   +I GL ++G
Sbjct: 582 MTRRGFVPELSMLVCLIKGLLRVG 605


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 150/340 (44%), Gaps = 15/340 (4%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVA---MDFLDSTGFSPNPNSLELYIQCLCESGLI 154
           S  G  PD+V    L DSL      K A   MD +   G  PN  +  + I  +C+ G +
Sbjct: 191 SGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSV 250

Query: 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH-----------DLIESG 203
            EA      + E GV   + T+N+ + G   +   D    L             DL+   
Sbjct: 251 REALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFN 310

Query: 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            +I   C  G + +  ++   + E+G      AFN LI          +  EL+  M + 
Sbjct: 311 SVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASS 370

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
              PD+FTY  +ING CK R+   A    ++++ +G  P+ V Y  ++  +C  G +G A
Sbjct: 371 GLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQA 430

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           R ++ EM     L +   Y++MIHG  +    + A+   K+M+D+G     VTY+  I  
Sbjct: 431 RDLFNEMDRNCKL-DAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINM 489

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
               G    A  + ++M   G   DV  +++LIQGY  +G
Sbjct: 490 FAKSGDLAAAERVLKQMTASGFVPDVAVFDSLIQGYGAKG 529



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 2/221 (0%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264
           L++A C D + ++   LLR + + G+ P+   +  LI   C+  +     ELL+ M    
Sbjct: 100 LMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESG 159

Query: 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324
             P+   Y  +++G CK+ +     +VF ++  RG  PD VMYT +I  LC+ G +  A 
Sbjct: 160 IEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAA 219

Query: 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384
           ++   M  +GL PN  TYN +I+  C+  ++ EA  L K M +KG     VTYNTLI GL
Sbjct: 220 RVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGL 279

Query: 385 CLHGRTDEAYHLFEEMAQ--KGIFRDVITYNTLIQGYCKEG 423
                 DEA  L EEM Q    +  D++T+N++I G CK G
Sbjct: 280 SSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIG 320



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 177/402 (44%), Gaps = 22/402 (5%)

Query: 42  EIAKQVCKITRTKPRWEQ-TLLSDIPSFNFNDPLFFREFLKQ--QNNVLLSIRFFQWLHS 98
           E A ++ +  R  P  E   LLS +PS    D + +   L    +   L +  F   + S
Sbjct: 26  EAAARLNRHLRLLPLPESPALLSALPSVR--DAVSYNTVLAALCRQGCLDAALFLLRVMS 83

Query: 99  H---YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESG 152
           H       P+ +S   L  +L   R    A+  L S    G  P+  +    I+ LC++ 
Sbjct: 84  HEPRLASRPNAISYTTLMRALCADRRAAQAVGLLRSMQDCGVRPDVVTYGTLIRGLCDAA 143

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            ++ A    +++ E G+  ++  ++  L G  K  R + V K++ ++   G         
Sbjct: 144 DVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYT 203

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI + C  GKV +   ++  + E GL P    +N LI+  C++ +     +L   M  +
Sbjct: 204 ALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEK 263

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL--KERGYVPDTVMYTTVIHGLCKMGWLG 321
              PD  TY  +I GL    +  EA  +  ++   E    PD + + +VIHGLCK+GW+ 
Sbjct: 264 GVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMR 323

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
            A ++   M   G   N   +N +I G  R+  +++A  L  EM   G    + TY+ LI
Sbjct: 324 QALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILI 383

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
            G C   + + A     EM  +G+  + + Y  L++  C +G
Sbjct: 384 NGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQG 425



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 72/233 (30%), Positives = 121/233 (51%), Gaps = 8/233 (3%)

Query: 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257
           D++  G LI+  C+   V    ELL ++ E G+ P    ++ L+  +C+   +  V ++ 
Sbjct: 128 DVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESVGKVF 187

Query: 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317
             M  R   PD   Y  +I+ LC+  K  +A RV + + ERG  P+ V Y  +I+ +CK 
Sbjct: 188 EEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINSMCKE 247

Query: 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-- 375
           G + +A  +   M  KG+ P+  TYN++I G   +  ++EA  L +EM+    GET V  
Sbjct: 248 GSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQ---GETRVRP 304

Query: 376 ---TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
              T+N++I GLC  G   +A  +   MA+ G   +++ +N LI G  +  K+
Sbjct: 305 DLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKV 357



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 59/198 (29%), Positives = 99/198 (50%), Gaps = 3/198 (1%)

Query: 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKRLE 287
           V +  ++N +++  C +        LL  M    R    P+  +Y  ++  LC  R+  +
Sbjct: 53  VRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASRPNAISYTTLMRALCADRRAAQ 112

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A  +   +++ G  PD V Y T+I GLC    +  A ++  EM   G+ PN   Y+ ++H
Sbjct: 113 AVGLLRSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLH 172

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
           GYC+    E   ++ +EM  +G     V Y  LI  LC HG+  +A  + + M ++G+  
Sbjct: 173 GYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEP 232

Query: 408 DVITYNTLIQGYCKEGKI 425
           +V+TYN LI   CKEG +
Sbjct: 233 NVVTYNVLINSMCKEGSV 250



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 150/339 (44%), Gaps = 17/339 (5%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
           G  PD+V+   L   L +A     A++ L+    +G  PN       +   C++G  E  
Sbjct: 124 GVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIEPNVVVYSCLLHGYCKTGRWESV 183

Query: 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              F ++   G+   +  + + +    +  +     ++   + E G          LI +
Sbjct: 184 GKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARVMDMMTERGLEPNVVTYNVLINS 243

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMV---ARNR 265
            C +G V E  +L + + E G+ P+   +N LI+             LL  M+    R R
Sbjct: 244 MCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVR 303

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
            PD  T+  VI+GLCK     +A +V   + E G   + V +  +I GL ++  +  A +
Sbjct: 304 -PDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAME 362

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           +  EM   GL P+ +TY+ +I+G+C++  +E A+    EM  +G     V Y  L+  +C
Sbjct: 363 LMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMC 422

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G   +A  LF EM  +    D   Y+T+I G  K G+
Sbjct: 423 DQGMMGQARDLFNEM-DRNCKLDAAAYSTMIHGAFKSGE 460



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 134/317 (42%), Gaps = 18/317 (5%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-----TGFSPNPNSLELYIQCLCESG 152
           S  G  PD+V+ N L   L        AM  L+      T   P+  +    I  LC+ G
Sbjct: 261 SEKGVQPDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIG 320

Query: 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------- 204
            + +A    + + E G   ++  +N  + G +++ +     +L  ++  SG         
Sbjct: 321 WMRQALQVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYS 380

Query: 205 -LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263
            LI  FC   +V      L ++   G+ PE   +  L+   C++   G+  +L + M  R
Sbjct: 381 ILINGFCKMRQVERAESYLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEM-DR 439

Query: 264 NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323
           N   D   Y  +I+G  KS ++  A     D+ + G +PD V Y+  I+   K G L  A
Sbjct: 440 NCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAA 499

Query: 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
            ++  +M   G +P+   ++S+I GY    + E+   L +EM  K         +T++  
Sbjct: 500 ERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTS 559

Query: 384 LCLHGRTDEAYHLFEEM 400
           L   G + E   L + +
Sbjct: 560 L---GASIEGQKLLQSL 573


>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
 gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
          Length = 2052

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/364 (26%), Positives = 159/364 (43%), Gaps = 18/364 (4%)

Query: 78   EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFL----DSTG 133
            + L    +V  +I+FF+W H  +G++    + N L + LV  R +K A   L      + 
Sbjct: 1633 DVLNHARDVEPTIQFFEWCHGRHGYTHTAFAFNRLLEFLVNKRQYKRAHQMLIAESKPSS 1692

Query: 134  FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193
            F  N  +    ++  CE G   +A      +K+  V  + K +N  L    K  +     
Sbjct: 1693 FQANAFTYSTIVRGYCEDGETRQALALLEHMKKAEVPANAKLYNIILTHLCKHGKEKEAL 1752

Query: 194  KLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRF 244
             L H         D+     LI A C  G++ +   L+  +       +   +N LI   
Sbjct: 1753 DLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGL 1812

Query: 245  CEKKN----FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300
            C K N      R   L   MV +   P + TY  VI+ L + +   +A +V + + E G 
Sbjct: 1813 CRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHENGC 1872

Query: 301  VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360
              D V Y  +I+   K G +  A  ++ EM  +G +P+  TYNS++ G+C+   +EEA +
Sbjct: 1873 AFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANK 1932

Query: 361  LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420
            L  EM  +G      TY ++       GR  +A+    EM ++G+  D I+Y  LI   C
Sbjct: 1933 LFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLV-DAISYVALISTIC 1991

Query: 421  KEGK 424
            K GK
Sbjct: 1992 KLGK 1995



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 80/310 (25%), Positives = 150/310 (48%), Gaps = 17/310 (5%)

Query: 110  NVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
            N++   L +    K A+D L S   T  +P+  +  + I  LC+ G +E+A      ++ 
Sbjct: 1736 NIILTHLCKHGKEKEALDLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQA 1795

Query: 167  MGVFGSIKTWNSALLG-CIKID---RTDLVWKLYHDLIESGY---------LIQAFCNDG 213
                  I T+N+ + G C K +   R +  ++L+ ++++ G+         +I A     
Sbjct: 1796 RECPTDIVTYNTLIHGLCRKGNGRFRVERAFRLFEEMVDKGHTPTSVTYTVVIDALLRVK 1855

Query: 214  KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
               +  ++L  + E+G   +   +N LI+RF +     +  +L   M  R   PD  TY 
Sbjct: 1856 MDEQAQKVLDLMHENGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYN 1915

Query: 274  EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
             +++G CK+ K  EA ++F ++K RG  P+   YT++     K G + DA     EM  +
Sbjct: 1916 SIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKE 1975

Query: 334  GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
            GL+ +  +Y ++I   C++   +   +L +EML+KG+    VT+N +   L     TD+A
Sbjct: 1976 GLV-DAISYVALISTICKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDA 2034

Query: 394  YHLFEEMAQK 403
              + +E+ Q+
Sbjct: 2035 KIMIQELRQQ 2044



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 11/178 (6%)

Query: 101  GFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEA 157
            G + DLV+ N+L +   +A     AMD    + + G  P+  +    +   C++G +EEA
Sbjct: 1871 GCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEA 1930

Query: 158  FCAFSKLKEMGVFGSIKTWNSALLGCIKIDR--------TDLVWKLYHDLIESGYLIQAF 209
               F+++K  G+F + +T+ S    C+K  R         ++  +   D I    LI   
Sbjct: 1931 NKLFAEMKARGIFPNGRTYTSITDACLKAGRMQDAHAYLVEMRKEGLVDAISYVALISTI 1990

Query: 210  CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
            C  GK   G++LLR++LE G  P    FN +     ++ N      ++  +  ++ +P
Sbjct: 1991 CKLGKGKLGFQLLREMLEKGFKPNLVTFNVVFEALSKESNTDDAKIMIQELRQQHSSP 2048


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/407 (26%), Positives = 176/407 (43%), Gaps = 50/407 (12%)

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVA- 125
           S N N  + F    K  NN  +  RF+++            + N+L  SL +A    +A 
Sbjct: 64  SKNLNPFISFEVVKKLDNNPHIGFRFWEFSRFKLNIRHSFWTYNLLTRSLCKAGMHDLAG 123

Query: 126 --MDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183
              + + S G SPN   L   +    E G +  A      L+   V G     NS L   
Sbjct: 124 QMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALL--LQSYEVEGCCMVVNSLLNTL 181

Query: 184 IKIDRTDLVWKLY---------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234
           +K+DR +   KL+         +D      LI+  C  GK  +  ELL  +   G +P+ 
Sbjct: 182 VKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDI 241

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFN 293
             +N LI  FC+     + +E+   + + +  +PD  TY  +I+G CK+ K  EA  + +
Sbjct: 242 VTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLD 301

Query: 294 DLKERGY-----------------------------------VPDTVMYTTVIHGLCKMG 318
           D+   G                                     PD V +T++I G C++G
Sbjct: 302 DMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVG 361

Query: 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378
            +    ++W EM  +G+ PN +TY+ +I+  C+ + L +A+ L  ++  K        YN
Sbjct: 362 QVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
            +I G C  G+ +EA  + EEM +K    D IT+  LI G+C +G++
Sbjct: 422 PVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 152/327 (46%), Gaps = 13/327 (3%)

Query: 110 NVLFDSLVEARAFKVAMD-FLDSTGFSP--NPNSLELYIQCLCESGLIEEAFCAFSKLKE 166
           N L ++LV+    + AM  F +   F    +  +  + I+ LC  G  E+A      +  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSG 234

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------YLIQAFCNDGKVS 216
            G    I T+N+ + G  K +      +++ D+  S            +I  +C  GK+ 
Sbjct: 235 FGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQ 294

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           E   LL  +L  G+ P N  FN L+  + +        E+   M++    PD  T+  +I
Sbjct: 295 EASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLI 354

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +G C+  +  + +R++ ++  RG  P+   Y+ +I+ LCK   L  AR++  ++  K ++
Sbjct: 355 DGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDII 414

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P  + YN +I G+C+   + EA  + +EM  K      +T+  LI G C+ GR  EA  +
Sbjct: 415 PQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSI 474

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEG 423
           F +M   G   D IT ++L+    K G
Sbjct: 475 FHKMVAIGCSPDKITVSSLLSCLLKAG 501



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 138/315 (43%), Gaps = 31/315 (9%)

Query: 98  SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD----STGFSPNPNSLELYIQCLCESGL 153
           S +G  PD+V+ N L     ++   K A +  D    S+G SP+  +    I   C++G 
Sbjct: 233 SGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGK 292

Query: 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213
           ++EA      +  +G++ +  T+N                           L+  +   G
Sbjct: 293 MQEASVLLDDMLRLGIYPTNVTFN--------------------------VLVDGYAKAG 326

Query: 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE 273
           ++    E+  +++  G  P+   F  LI  +C      +   L   M AR   P+ FTY 
Sbjct: 327 EMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYS 386

Query: 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333
            +IN LCK  + L+A  +   L  +  +P   MY  VI G CK G + +A  +  EM  K
Sbjct: 387 ILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKK 446

Query: 334 GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393
              P++ T+  +I G+C    + EA  +  +M+  G     +T ++L++ L   G   EA
Sbjct: 447 KCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506

Query: 394 YHLFEEMAQKGIFRD 408
           YHL  ++A KG   D
Sbjct: 507 YHL-NQIAHKGQIND 520


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.139    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,824,064,158
Number of Sequences: 23463169
Number of extensions: 286188534
Number of successful extensions: 804807
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7130
Number of HSP's successfully gapped in prelim test: 4427
Number of HSP's that attempted gapping in prelim test: 638562
Number of HSP's gapped (non-prelim): 70074
length of query: 427
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 282
effective length of database: 8,957,035,862
effective search space: 2525884113084
effective search space used: 2525884113084
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 78 (34.7 bits)