Query 045814
Match_columns 427
No_of_seqs 540 out of 2975
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 05:46:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 9E-57 1.9E-61 450.2 45.6 343 79-426 415-771 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.3E-55 2.9E-60 441.8 46.2 344 76-420 443-800 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 3.3E-52 7.2E-57 414.0 41.9 339 79-426 132-511 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2.8E-51 6E-56 407.4 36.6 338 78-427 95-480 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 6.8E-50 1.5E-54 406.5 39.5 342 76-427 228-643 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.2E-48 2.6E-53 397.4 40.6 335 81-426 299-674 (857)
7 TIGR02917 PEP_TPR_lipo putativ 99.9 2.1E-21 4.7E-26 200.9 45.6 340 77-427 540-889 (899)
8 TIGR02917 PEP_TPR_lipo putativ 99.9 3.6E-20 7.7E-25 191.8 45.9 336 80-424 441-819 (899)
9 PRK11788 tetratricopeptide rep 99.9 2.8E-21 6.2E-26 180.6 31.6 296 81-410 46-354 (389)
10 PRK11788 tetratricopeptide rep 99.9 8.2E-20 1.8E-24 170.7 33.2 269 76-375 75-354 (389)
11 PRK15174 Vi polysaccharide exp 99.8 7.2E-17 1.6E-21 158.7 41.8 321 75-403 47-381 (656)
12 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-15 2.8E-20 150.1 42.2 342 78-427 135-560 (615)
13 PRK15174 Vi polysaccharide exp 99.8 2.8E-16 6E-21 154.6 36.7 310 109-426 45-369 (656)
14 PRK11447 cellulose synthase su 99.8 6.5E-15 1.4E-19 154.6 43.8 339 77-426 310-728 (1157)
15 KOG4626 O-linked N-acetylgluco 99.8 4.1E-16 8.9E-21 141.5 28.1 321 76-409 122-489 (966)
16 KOG4626 O-linked N-acetylgluco 99.8 1.6E-15 3.6E-20 137.7 31.0 296 77-384 191-500 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.2E-14 2.6E-19 143.4 38.2 291 108-403 129-496 (615)
18 PRK11447 cellulose synthase su 99.8 1.9E-14 4E-19 151.2 39.0 339 79-426 278-688 (1157)
19 PRK10049 pgaA outer membrane p 99.7 1.7E-13 3.6E-18 137.9 41.5 343 75-425 54-443 (765)
20 PRK14574 hmsH outer membrane p 99.7 9.3E-12 2E-16 123.6 42.6 341 79-425 111-500 (822)
21 PRK10049 pgaA outer membrane p 99.7 2.3E-12 5E-17 129.7 38.9 332 76-418 89-469 (765)
22 PRK14574 hmsH outer membrane p 99.7 4.8E-12 1E-16 125.6 40.2 338 80-425 44-466 (822)
23 KOG4422 Uncharacterized conser 99.6 1.5E-12 3.4E-17 113.7 27.6 308 103-416 204-565 (625)
24 TIGR00540 hemY_coli hemY prote 99.6 5.4E-12 1.2E-16 118.0 31.8 280 118-402 96-398 (409)
25 PRK10747 putative protoheme IX 99.6 6.4E-12 1.4E-16 116.8 32.1 274 119-402 97-389 (398)
26 PRK09782 bacteriophage N4 rece 99.6 6.6E-11 1.4E-15 120.0 41.4 313 80-402 386-739 (987)
27 COG2956 Predicted N-acetylgluc 99.6 4.8E-12 1E-16 106.9 27.6 283 119-406 48-350 (389)
28 KOG4422 Uncharacterized conser 99.6 9.5E-12 2E-16 108.9 29.6 309 83-422 128-481 (625)
29 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4.2E-19 127.8 12.1 259 111-402 13-276 (280)
30 KOG1155 Anaphase-promoting com 99.6 9.7E-11 2.1E-15 103.7 34.2 270 147-422 236-553 (559)
31 KOG2076 RNA polymerase III tra 99.6 5.5E-11 1.2E-15 113.3 34.8 343 79-426 148-543 (895)
32 PRK10747 putative protoheme IX 99.5 4.4E-11 9.5E-16 111.3 31.9 273 83-367 97-389 (398)
33 PF13429 TPR_15: Tetratricopep 99.5 8.6E-14 1.9E-18 123.6 12.9 260 76-367 14-276 (280)
34 PRK09782 bacteriophage N4 rece 99.5 5.3E-10 1.1E-14 113.6 41.2 310 84-403 356-706 (987)
35 TIGR00540 hemY_coli hemY prote 99.5 9.4E-11 2E-15 109.7 32.1 282 81-367 95-398 (409)
36 COG2956 Predicted N-acetylgluc 99.5 9.1E-11 2E-15 99.3 27.6 260 152-418 49-324 (389)
37 PF13041 PPR_2: PPR repeat fam 99.5 1.1E-13 2.3E-18 87.2 6.4 50 372-421 1-50 (50)
38 KOG1126 DNA-binding cell divis 99.5 3.8E-11 8.3E-16 110.9 25.0 199 205-408 427-625 (638)
39 KOG1126 DNA-binding cell divis 99.5 1.7E-11 3.8E-16 113.1 22.2 262 153-426 334-608 (638)
40 KOG2002 TPR-containing nuclear 99.5 4.5E-10 9.7E-15 108.0 31.9 277 135-414 449-756 (1018)
41 COG3071 HemY Uncharacterized e 99.5 1.3E-09 2.9E-14 95.1 31.7 289 112-408 88-395 (400)
42 KOG2002 TPR-containing nuclear 99.4 1.6E-09 3.5E-14 104.3 33.8 375 34-426 317-733 (1018)
43 KOG2003 TPR repeat-containing 99.4 3.6E-10 7.7E-15 99.9 25.2 337 84-425 251-710 (840)
44 PF13041 PPR_2: PPR repeat fam 99.4 7.4E-13 1.6E-17 83.4 6.4 49 302-350 1-49 (50)
45 KOG2076 RNA polymerase III tra 99.4 3.1E-09 6.7E-14 101.6 32.9 317 106-426 139-500 (895)
46 TIGR02521 type_IV_pilW type IV 99.4 7.1E-10 1.5E-14 95.5 24.7 194 206-403 38-232 (234)
47 COG3071 HemY Uncharacterized e 99.4 9.4E-09 2E-13 89.9 30.6 279 83-372 97-394 (400)
48 KOG0495 HAT repeat protein [RN 99.4 6.1E-08 1.3E-12 89.9 36.8 331 80-423 526-865 (913)
49 KOG4318 Bicoid mRNA stability 99.3 8.4E-11 1.8E-15 111.7 18.7 264 98-423 17-285 (1088)
50 PF12569 NARP1: NMDA receptor- 99.3 5.5E-09 1.2E-13 98.5 30.7 283 113-402 11-333 (517)
51 KOG1155 Anaphase-promoting com 99.3 1E-08 2.2E-13 91.1 30.2 143 277-423 338-480 (559)
52 TIGR02521 type_IV_pilW type IV 99.3 2.8E-09 6.1E-14 91.8 25.9 200 138-367 31-231 (234)
53 PRK12370 invasion protein regu 99.3 2.8E-09 6E-14 103.7 28.3 193 137-332 255-469 (553)
54 KOG1129 TPR repeat-containing 99.3 4.3E-10 9.4E-15 95.4 19.4 220 110-333 227-458 (478)
55 KOG4318 Bicoid mRNA stability 99.3 5E-10 1.1E-14 106.5 21.1 69 78-156 33-101 (1088)
56 PRK12370 invasion protein regu 99.3 5.9E-09 1.3E-13 101.4 29.4 257 104-368 254-535 (553)
57 KOG1129 TPR repeat-containing 99.3 6E-10 1.3E-14 94.5 18.9 229 142-403 227-458 (478)
58 KOG1915 Cell cycle control pro 99.3 1.4E-07 3E-12 84.4 33.4 153 247-403 379-536 (677)
59 KOG1840 Kinesin light chain [C 99.2 6.5E-09 1.4E-13 97.0 25.1 260 139-417 200-499 (508)
60 KOG2003 TPR repeat-containing 99.2 3.8E-09 8.3E-14 93.5 22.1 335 86-426 217-677 (840)
61 KOG0495 HAT repeat protein [RN 99.2 6.1E-07 1.3E-11 83.5 36.3 323 86-418 422-796 (913)
62 KOG1840 Kinesin light chain [C 99.2 4.3E-09 9.3E-14 98.1 22.9 241 106-366 199-477 (508)
63 KOG0547 Translocase of outer m 99.2 1E-07 2.3E-12 85.5 30.2 189 209-402 370-565 (606)
64 KOG0547 Translocase of outer m 99.2 6E-08 1.3E-12 87.0 26.7 335 83-426 128-554 (606)
65 KOG1915 Cell cycle control pro 99.2 5.2E-07 1.1E-11 80.8 32.1 311 83-402 154-584 (677)
66 KOG1173 Anaphase-promoting com 99.2 7.8E-08 1.7E-12 87.8 26.8 277 101-385 239-533 (611)
67 COG3063 PilF Tfp pilus assembl 99.1 1.1E-07 2.4E-12 77.3 22.8 205 205-415 41-246 (250)
68 COG3063 PilF Tfp pilus assembl 99.1 1.2E-07 2.5E-12 77.1 21.0 186 236-425 37-223 (250)
69 PF12569 NARP1: NMDA receptor- 99.0 6.2E-07 1.3E-11 84.9 28.9 284 77-367 11-333 (517)
70 KOG1173 Anaphase-promoting com 99.0 4.3E-07 9.3E-12 83.1 25.2 263 80-349 254-532 (611)
71 PRK11189 lipoprotein NlpI; Pro 99.0 7.1E-07 1.5E-11 79.7 26.8 197 208-414 73-275 (296)
72 KOG2047 mRNA splicing factor [ 99.0 1.2E-05 2.6E-10 74.9 33.2 100 236-335 389-508 (835)
73 KOG2376 Signal recognition par 99.0 2.4E-05 5.2E-10 72.3 34.3 363 35-422 23-505 (652)
74 cd05804 StaR_like StaR_like; a 98.9 1.1E-05 2.3E-10 74.6 32.1 198 205-403 120-336 (355)
75 KOG1174 Anaphase-promoting com 98.9 1.6E-05 3.5E-10 70.3 29.9 272 90-368 216-500 (564)
76 PRK11189 lipoprotein NlpI; Pro 98.9 1.9E-06 4.2E-11 76.9 25.0 216 119-369 39-266 (296)
77 PF12854 PPR_1: PPR repeat 98.9 3.5E-09 7.6E-14 59.8 3.9 32 369-400 2-33 (34)
78 KOG1156 N-terminal acetyltrans 98.8 0.00012 2.5E-09 68.7 33.8 259 139-405 144-470 (700)
79 PF04733 Coatomer_E: Coatomer 98.8 2.1E-07 4.6E-12 81.9 15.2 249 114-403 9-265 (290)
80 PF12854 PPR_1: PPR repeat 98.8 8.4E-09 1.8E-13 58.3 3.7 27 302-328 5-31 (34)
81 PF04733 Coatomer_E: Coatomer 98.8 5.2E-07 1.1E-11 79.5 16.7 248 82-368 13-265 (290)
82 KOG1174 Anaphase-promoting com 98.8 4.9E-05 1.1E-09 67.4 28.2 263 133-403 227-500 (564)
83 KOG4340 Uncharacterized conser 98.7 5.8E-06 1.2E-10 70.0 21.0 311 82-402 22-374 (459)
84 KOG1914 mRNA cleavage and poly 98.7 0.00014 3.1E-09 66.7 31.0 172 250-423 347-524 (656)
85 cd05804 StaR_like StaR_like; a 98.7 0.00012 2.5E-09 67.7 31.8 191 178-368 119-336 (355)
86 KOG2047 mRNA splicing factor [ 98.7 3.1E-05 6.7E-10 72.3 27.0 299 86-402 91-453 (835)
87 KOG1125 TPR repeat-containing 98.7 3.6E-06 7.8E-11 77.5 20.0 243 145-396 292-564 (579)
88 KOG4340 Uncharacterized conser 98.7 5.2E-06 1.1E-10 70.3 19.3 290 103-400 7-336 (459)
89 KOG1128 Uncharacterized conser 98.7 3.1E-06 6.8E-11 79.9 19.4 217 174-403 399-616 (777)
90 KOG1128 Uncharacterized conser 98.7 2.1E-06 4.6E-11 81.0 17.4 221 101-333 393-616 (777)
91 KOG1156 N-terminal acetyltrans 98.6 0.00043 9.3E-09 65.1 32.8 60 342-403 374-434 (700)
92 KOG4162 Predicted calmodulin-b 98.6 0.00045 9.8E-09 66.2 32.2 323 101-426 318-771 (799)
93 KOG1125 TPR repeat-containing 98.6 1.2E-05 2.5E-10 74.2 21.1 239 116-358 295-561 (579)
94 PLN02789 farnesyltranstransfer 98.6 6.6E-05 1.4E-09 67.2 25.4 215 108-351 39-267 (320)
95 KOG0985 Vesicle coat protein c 98.6 0.00014 3.1E-09 71.4 28.7 277 104-424 982-1264(1666)
96 KOG3785 Uncharacterized conser 98.6 0.00031 6.7E-09 61.3 29.8 315 76-402 63-456 (557)
97 KOG1070 rRNA processing protei 98.6 3.4E-05 7.3E-10 78.1 25.1 232 135-396 1454-1693(1710)
98 PRK04841 transcriptional regul 98.6 0.00022 4.9E-09 74.5 33.2 294 110-403 413-760 (903)
99 KOG1070 rRNA processing protei 98.6 3.8E-05 8.3E-10 77.7 25.2 225 172-424 1457-1686(1710)
100 TIGR03302 OM_YfiO outer membra 98.6 1.6E-05 3.4E-10 68.7 19.7 60 344-403 171-232 (235)
101 PRK10370 formate-dependent nit 98.6 2.3E-05 4.9E-10 65.3 19.7 119 282-403 52-173 (198)
102 PRK10370 formate-dependent nit 98.6 1.9E-05 4.2E-10 65.7 19.2 117 214-333 54-173 (198)
103 KOG2376 Signal recognition par 98.6 0.00068 1.5E-08 63.1 30.1 331 82-424 24-432 (652)
104 KOG3785 Uncharacterized conser 98.5 0.00014 3E-09 63.3 23.9 290 112-412 157-497 (557)
105 PRK15179 Vi polysaccharide bio 98.5 6.1E-05 1.3E-09 74.3 24.8 133 233-368 85-217 (694)
106 PLN02789 farnesyltranstransfer 98.5 8.1E-05 1.8E-09 66.6 23.5 120 212-334 50-172 (320)
107 PRK04841 transcriptional regul 98.5 0.00045 9.7E-09 72.3 32.2 310 117-426 385-748 (903)
108 PRK14720 transcript cleavage f 98.5 9.7E-05 2.1E-09 73.9 25.0 267 105-419 30-300 (906)
109 KOG0548 Molecular co-chaperone 98.5 0.0011 2.3E-08 61.2 31.2 330 82-421 14-471 (539)
110 KOG3616 Selective LIM binding 98.5 0.00016 3.5E-09 68.8 24.4 108 206-326 739-846 (1636)
111 TIGR03302 OM_YfiO outer membra 98.4 3.1E-05 6.7E-10 66.9 18.4 160 208-368 42-232 (235)
112 KOG3617 WD40 and TPR repeat-co 98.4 0.0019 4.2E-08 62.6 31.1 291 114-427 834-1189(1416)
113 KOG3081 Vesicle coat complex C 98.4 0.00033 7.1E-09 58.7 22.7 154 238-402 112-270 (299)
114 KOG1914 mRNA cleavage and poly 98.4 0.00072 1.6E-08 62.3 26.7 139 285-425 347-488 (656)
115 KOG3617 WD40 and TPR repeat-co 98.4 8.8E-05 1.9E-09 71.3 21.8 260 104-401 724-994 (1416)
116 TIGR00756 PPR pentatricopeptid 98.4 5.8E-07 1.2E-11 51.5 4.5 33 376-408 2-34 (35)
117 COG5010 TadD Flp pilus assembl 98.4 0.00013 2.9E-09 60.9 19.4 159 238-400 70-228 (257)
118 KOG3616 Selective LIM binding 98.4 9.8E-05 2.1E-09 70.2 20.1 109 241-362 739-847 (1636)
119 COG5010 TadD Flp pilus assembl 98.3 5.5E-05 1.2E-09 63.2 16.4 154 209-366 76-229 (257)
120 KOG0985 Vesicle coat protein c 98.3 0.0016 3.4E-08 64.5 28.0 279 108-425 938-1236(1666)
121 PF13812 PPR_3: Pentatricopept 98.3 1.1E-06 2.4E-11 50.0 4.3 33 375-407 2-34 (34)
122 PRK15359 type III secretion sy 98.3 0.00011 2.4E-09 57.8 16.7 92 309-402 29-120 (144)
123 KOG3081 Vesicle coat complex C 98.3 0.00028 6.1E-09 59.1 18.7 183 231-424 69-256 (299)
124 PRK15359 type III secretion sy 98.3 0.00012 2.5E-09 57.6 16.1 93 274-368 29-121 (144)
125 KOG0624 dsRNA-activated protei 98.3 0.0025 5.5E-08 55.5 28.0 299 82-403 50-370 (504)
126 PRK14720 transcript cleavage f 98.2 0.0006 1.3E-08 68.4 24.0 210 78-315 39-268 (906)
127 KOG4162 Predicted calmodulin-b 98.2 0.0019 4.1E-08 62.1 25.9 129 271-403 652-783 (799)
128 TIGR00756 PPR pentatricopeptid 98.2 2.4E-06 5.2E-11 48.9 4.4 32 307-338 3-34 (35)
129 PRK15179 Vi polysaccharide bio 98.2 0.00046 1E-08 68.3 22.7 135 266-403 83-217 (694)
130 PF10037 MRP-S27: Mitochondria 98.2 2.6E-05 5.6E-10 71.6 13.0 123 265-387 62-186 (429)
131 TIGR02552 LcrH_SycD type III s 98.2 0.00011 2.3E-09 57.3 14.9 94 307-402 20-113 (135)
132 KOG0624 dsRNA-activated protei 98.2 0.003 6.5E-08 55.1 24.2 277 109-420 41-352 (504)
133 COG4783 Putative Zn-dependent 98.2 0.00082 1.8E-08 61.3 21.2 118 244-365 316-434 (484)
134 PF10037 MRP-S27: Mitochondria 98.2 4.9E-05 1.1E-09 69.8 13.6 125 228-352 60-186 (429)
135 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 0.00018 3.9E-09 65.9 16.9 125 272-402 172-296 (395)
136 PF13812 PPR_3: Pentatricopept 98.1 4E-06 8.8E-11 47.5 4.1 29 307-335 4-32 (34)
137 TIGR02552 LcrH_SycD type III s 98.1 0.00014 3.1E-09 56.6 14.2 94 237-332 20-113 (135)
138 KOG2053 Mitochondrial inherita 98.1 0.0064 1.4E-07 59.6 26.6 193 210-406 54-258 (932)
139 PF01535 PPR: PPR repeat; Int 98.1 4.9E-06 1.1E-10 46.0 3.6 30 376-405 2-31 (31)
140 PF08579 RPM2: Mitochondrial r 98.1 6.8E-05 1.5E-09 54.1 10.0 70 352-421 38-116 (120)
141 COG4783 Putative Zn-dependent 98.1 0.00049 1.1E-08 62.7 17.7 159 232-397 272-431 (484)
142 PF08579 RPM2: Mitochondrial r 98.1 7.7E-05 1.7E-09 53.9 10.1 75 311-385 32-115 (120)
143 PF09976 TPR_21: Tetratricopep 98.0 0.00029 6.2E-09 55.6 14.1 125 271-399 14-143 (145)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00028 6E-09 64.6 15.3 122 237-365 172-294 (395)
145 KOG1127 TPR repeat-containing 98.0 0.009 1.9E-07 59.4 25.4 150 74-226 496-657 (1238)
146 PF09976 TPR_21: Tetratricopep 98.0 0.00056 1.2E-08 54.0 14.6 127 236-365 14-144 (145)
147 KOG3060 Uncharacterized conser 97.9 0.0096 2.1E-07 49.9 22.6 84 282-367 99-182 (289)
148 PF01535 PPR: PPR repeat; Int 97.9 1.9E-05 4.2E-10 43.5 3.7 24 307-330 3-26 (31)
149 KOG0548 Molecular co-chaperone 97.9 0.0053 1.2E-07 56.8 20.6 215 141-369 227-456 (539)
150 KOG3060 Uncharacterized conser 97.9 0.012 2.6E-07 49.3 21.0 119 212-333 99-220 (289)
151 PF05843 Suf: Suppressor of fo 97.9 0.00031 6.7E-09 62.1 12.6 130 271-403 3-136 (280)
152 KOG1127 TPR repeat-containing 97.8 0.0031 6.8E-08 62.4 19.1 55 140-195 494-548 (1238)
153 PF04840 Vps16_C: Vps16, C-ter 97.8 0.028 6.1E-07 50.4 25.9 109 269-397 177-285 (319)
154 PF06239 ECSIT: Evolutionarily 97.8 0.00075 1.6E-08 55.2 11.9 104 267-389 45-153 (228)
155 PRK02603 photosystem I assembl 97.7 0.0024 5.2E-08 52.0 14.7 130 270-425 36-167 (172)
156 PF06239 ECSIT: Evolutionarily 97.7 0.0011 2.4E-08 54.2 12.1 117 231-366 44-166 (228)
157 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0028 6E-08 47.8 13.8 97 307-403 5-105 (119)
158 cd00189 TPR Tetratricopeptide 97.7 0.0012 2.5E-08 47.1 11.2 93 308-402 4-96 (100)
159 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0023 5E-08 48.3 13.1 97 272-368 5-105 (119)
160 cd00189 TPR Tetratricopeptide 97.6 0.0013 2.7E-08 46.9 10.9 93 273-367 4-96 (100)
161 PF12895 Apc3: Anaphase-promot 97.6 0.00016 3.5E-09 51.0 5.6 81 317-399 2-83 (84)
162 CHL00033 ycf3 photosystem I as 97.6 0.0024 5.1E-08 51.9 13.2 93 306-399 37-138 (168)
163 PF14938 SNAP: Soluble NSF att 97.6 0.016 3.6E-07 51.3 19.5 130 145-297 42-183 (282)
164 PRK10866 outer membrane biogen 97.6 0.041 9E-07 47.4 21.5 173 209-401 42-239 (243)
165 PRK02603 photosystem I assembl 97.6 0.0053 1.2E-07 50.0 15.0 95 233-328 34-130 (172)
166 PLN03088 SGT1, suppressor of 97.5 0.004 8.6E-08 57.2 15.0 91 276-368 9-99 (356)
167 PF14938 SNAP: Soluble NSF att 97.5 0.026 5.6E-07 50.1 19.6 197 113-331 42-264 (282)
168 PF12895 Apc3: Anaphase-promot 97.5 0.00018 3.8E-09 50.7 4.7 47 283-329 3-50 (84)
169 PF05843 Suf: Suppressor of fo 97.5 0.0037 8E-08 55.3 13.5 129 236-367 3-135 (280)
170 PF04840 Vps16_C: Vps16, C-ter 97.5 0.077 1.7E-06 47.6 22.8 86 304-399 177-262 (319)
171 CHL00033 ycf3 photosystem I as 97.4 0.004 8.7E-08 50.5 12.5 94 270-364 36-138 (168)
172 KOG2041 WD40 repeat protein [G 97.4 0.038 8.3E-07 53.0 19.7 213 122-364 679-903 (1189)
173 PLN03088 SGT1, suppressor of 97.4 0.005 1.1E-07 56.5 14.0 91 207-299 10-100 (356)
174 PRK15363 pathogenicity island 97.4 0.0048 1E-07 48.2 11.7 91 275-367 41-131 (157)
175 PRK10153 DNA-binding transcrip 97.4 0.016 3.4E-07 55.8 17.4 135 266-403 334-482 (517)
176 PRK10866 outer membrane biogen 97.3 0.046 1E-06 47.1 18.4 187 137-366 31-239 (243)
177 PRK15363 pathogenicity island 97.3 0.018 3.8E-07 45.1 14.1 96 306-403 37-132 (157)
178 PF12688 TPR_5: Tetratrico pep 97.3 0.022 4.7E-07 42.8 13.9 56 312-367 9-66 (120)
179 PF12921 ATP13: Mitochondrial 97.3 0.0074 1.6E-07 45.8 11.4 80 303-382 1-96 (126)
180 KOG2796 Uncharacterized conser 97.3 0.09 1.9E-06 44.5 22.4 144 236-382 179-327 (366)
181 PF03704 BTAD: Bacterial trans 97.2 0.011 2.5E-07 46.5 12.8 58 237-295 65-122 (146)
182 KOG0553 TPR repeat-containing 97.2 0.0045 9.7E-08 53.2 10.7 101 242-346 89-189 (304)
183 PF03704 BTAD: Bacterial trans 97.2 0.0095 2.1E-07 47.0 12.1 72 341-413 64-140 (146)
184 KOG2053 Mitochondrial inherita 97.2 0.32 6.8E-06 48.4 36.7 183 80-265 53-257 (932)
185 PF14559 TPR_19: Tetratricopep 97.1 0.0018 3.9E-08 43.3 6.2 52 351-403 3-54 (68)
186 KOG0553 TPR repeat-containing 97.1 0.0076 1.6E-07 51.8 11.1 102 277-382 89-190 (304)
187 PF13525 YfiO: Outer membrane 97.1 0.064 1.4E-06 45.0 16.7 176 208-394 14-198 (203)
188 PF14559 TPR_19: Tetratricopep 97.1 0.0017 3.6E-08 43.5 5.7 23 344-366 30-52 (68)
189 PF12688 TPR_5: Tetratrico pep 97.1 0.031 6.7E-07 42.0 12.9 89 208-296 10-102 (120)
190 PRK10153 DNA-binding transcrip 97.1 0.047 1E-06 52.6 17.3 143 229-377 332-489 (517)
191 KOG1130 Predicted G-alpha GTPa 97.1 0.015 3.2E-07 52.2 12.5 133 270-402 196-343 (639)
192 PF13525 YfiO: Outer membrane 97.0 0.075 1.6E-06 44.5 16.4 176 239-425 10-194 (203)
193 KOG2280 Vacuolar assembly/sort 97.0 0.27 5.9E-06 47.9 21.0 292 83-398 450-794 (829)
194 PF13414 TPR_11: TPR repeat; P 97.0 0.0043 9.4E-08 41.6 6.9 64 137-201 2-66 (69)
195 KOG1538 Uncharacterized conser 97.0 0.046 9.9E-07 52.0 15.3 210 142-367 602-845 (1081)
196 COG4235 Cytochrome c biogenesi 96.9 0.083 1.8E-06 45.8 15.5 99 303-403 155-256 (287)
197 PF13432 TPR_16: Tetratricopep 96.9 0.0047 1E-07 40.8 6.6 50 280-330 8-57 (65)
198 PF12921 ATP13: Mitochondrial 96.9 0.014 3.1E-07 44.3 9.8 49 371-419 49-98 (126)
199 PF13432 TPR_16: Tetratricopep 96.8 0.0062 1.4E-07 40.2 6.7 53 146-199 5-57 (65)
200 KOG2041 WD40 repeat protein [G 96.8 0.57 1.2E-05 45.4 22.0 131 83-223 747-902 (1189)
201 PRK10803 tol-pal system protei 96.8 0.034 7.4E-07 48.4 12.4 96 272-367 146-245 (263)
202 PF13414 TPR_11: TPR repeat; P 96.7 0.007 1.5E-07 40.5 6.4 59 306-365 5-64 (69)
203 COG4235 Cytochrome c biogenesi 96.7 0.13 2.9E-06 44.6 15.3 112 267-382 154-268 (287)
204 PF13281 DUF4071: Domain of un 96.7 0.48 1E-05 43.2 20.0 166 236-403 143-334 (374)
205 KOG2280 Vacuolar assembly/sort 96.6 0.82 1.8E-05 44.7 24.6 281 108-402 439-772 (829)
206 PRK10803 tol-pal system protei 96.5 0.057 1.2E-06 47.0 12.1 98 236-333 145-246 (263)
207 PF08631 SPO22: Meiosis protei 96.5 0.54 1.2E-05 41.6 24.8 231 149-401 4-273 (278)
208 PRK15331 chaperone protein Sic 96.4 0.13 2.8E-06 40.6 12.2 88 279-368 47-134 (165)
209 KOG1130 Predicted G-alpha GTPa 96.4 0.025 5.5E-07 50.8 9.1 131 236-366 197-342 (639)
210 COG4700 Uncharacterized protei 96.4 0.39 8.5E-06 38.6 17.1 134 134-295 85-219 (251)
211 KOG3941 Intermediate in Toll s 96.4 0.028 6.1E-07 47.9 8.7 89 301-389 64-173 (406)
212 PF04053 Coatomer_WDAD: Coatom 96.4 0.061 1.3E-06 50.6 12.0 155 82-259 273-427 (443)
213 KOG2796 Uncharacterized conser 96.4 0.55 1.2E-05 40.0 21.2 140 203-345 181-325 (366)
214 PF13424 TPR_12: Tetratricopep 96.3 0.013 2.8E-07 40.4 5.8 61 341-401 7-73 (78)
215 PF13371 TPR_9: Tetratricopept 96.3 0.034 7.5E-07 37.6 7.6 53 279-332 5-57 (73)
216 PF13371 TPR_9: Tetratricopept 96.2 0.042 9.1E-07 37.1 7.9 55 348-403 4-58 (73)
217 PF13424 TPR_12: Tetratricopep 96.2 0.016 3.6E-07 39.8 5.8 61 306-366 7-73 (78)
218 PF04053 Coatomer_WDAD: Coatom 96.2 0.13 2.8E-06 48.5 13.0 126 74-224 299-427 (443)
219 PRK15331 chaperone protein Sic 96.2 0.49 1.1E-05 37.4 14.8 90 312-403 45-134 (165)
220 COG5107 RNA14 Pre-mRNA 3'-end 96.1 1.1 2.4E-05 41.3 26.9 146 270-421 398-547 (660)
221 KOG1538 Uncharacterized conser 96.1 0.24 5.2E-06 47.4 14.1 199 99-334 628-847 (1081)
222 smart00299 CLH Clathrin heavy 96.1 0.5 1.1E-05 36.7 15.5 84 274-365 12-95 (140)
223 COG4700 Uncharacterized protei 96.0 0.66 1.4E-05 37.3 18.0 99 267-367 87-188 (251)
224 KOG0550 Molecular chaperone (D 95.9 1.3 2.8E-05 40.4 19.4 170 243-421 178-369 (486)
225 PF09205 DUF1955: Domain of un 95.8 0.56 1.2E-05 35.4 13.4 138 150-300 14-151 (161)
226 KOG3941 Intermediate in Toll s 95.7 0.09 2E-06 45.0 9.0 87 233-319 66-173 (406)
227 PF07079 DUF1347: Protein of u 95.7 1.7 3.6E-05 40.2 31.0 88 320-414 437-530 (549)
228 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.22 4.7E-06 46.1 12.0 65 103-167 72-141 (453)
229 KOG2114 Vacuolar assembly/sort 95.7 0.58 1.3E-05 46.3 15.2 61 105-165 333-395 (933)
230 PF09205 DUF1955: Domain of un 95.5 0.76 1.7E-05 34.7 12.2 136 246-406 14-152 (161)
231 COG5107 RNA14 Pre-mRNA 3'-end 95.5 2.1 4.6E-05 39.6 19.2 132 233-368 396-531 (660)
232 smart00299 CLH Clathrin heavy 95.4 0.95 2.1E-05 35.2 14.6 45 73-119 10-54 (140)
233 PLN03098 LPA1 LOW PSII ACCUMUL 95.3 0.38 8.2E-06 44.6 12.2 64 268-333 74-141 (453)
234 PF13170 DUF4003: Protein of u 95.3 2 4.4E-05 38.2 19.3 130 215-346 78-224 (297)
235 KOG1920 IkappaB kinase complex 95.1 3.7 8E-05 42.7 19.1 81 310-401 971-1053(1265)
236 PF10300 DUF3808: Protein of u 95.1 2 4.3E-05 41.2 16.9 164 236-402 190-375 (468)
237 COG4105 ComL DNA uptake lipopr 95.0 2 4.4E-05 36.6 20.4 168 234-403 35-233 (254)
238 KOG1920 IkappaB kinase complex 94.9 1.7 3.8E-05 44.9 16.3 118 170-296 932-1053(1265)
239 PF13170 DUF4003: Protein of u 94.9 2.6 5.6E-05 37.5 16.1 139 154-314 78-227 (297)
240 COG1729 Uncharacterized protei 94.7 1.1 2.5E-05 38.5 12.6 96 307-403 145-244 (262)
241 KOG0543 FKBP-type peptidyl-pro 94.7 0.72 1.6E-05 41.8 11.8 94 306-402 259-354 (397)
242 COG3629 DnrI DNA-binding trans 94.6 0.49 1.1E-05 41.2 10.3 79 304-383 153-236 (280)
243 KOG0543 FKBP-type peptidyl-pro 94.5 0.78 1.7E-05 41.7 11.5 96 270-368 258-355 (397)
244 PF13428 TPR_14: Tetratricopep 94.2 0.15 3.3E-06 30.4 4.7 40 139-179 2-41 (44)
245 KOG4555 TPR repeat-containing 94.1 1.8 3.9E-05 32.7 10.9 91 208-299 52-145 (175)
246 KOG4555 TPR repeat-containing 94.1 1.9 4.2E-05 32.6 11.2 91 278-369 52-145 (175)
247 KOG0550 Molecular chaperone (D 94.0 5 0.00011 36.8 19.1 89 279-368 259-350 (486)
248 KOG1585 Protein required for f 93.9 3.6 7.7E-05 34.9 15.5 27 139-165 32-58 (308)
249 COG3629 DnrI DNA-binding trans 93.8 0.79 1.7E-05 40.0 9.9 60 236-296 155-214 (280)
250 PF13512 TPR_18: Tetratricopep 93.7 2.5 5.4E-05 32.7 12.0 71 280-350 21-93 (142)
251 PF13512 TPR_18: Tetratricopep 93.7 2.5 5.5E-05 32.7 11.8 76 241-316 17-94 (142)
252 PF13281 DUF4071: Domain of un 93.7 5.5 0.00012 36.5 20.7 31 338-368 304-334 (374)
253 COG3118 Thioredoxin domain-con 93.7 4.5 9.7E-05 35.4 16.3 148 242-394 142-292 (304)
254 COG0457 NrfG FOG: TPR repeat [ 93.6 3.7 8E-05 34.3 22.9 224 152-402 37-264 (291)
255 PF13929 mRNA_stabil: mRNA sta 93.5 4.8 0.0001 35.2 15.8 140 284-423 143-292 (292)
256 KOG2610 Uncharacterized conser 93.5 5.2 0.00011 35.6 14.5 87 206-294 144-234 (491)
257 PF07079 DUF1347: Protein of u 93.2 7.2 0.00016 36.3 20.5 258 147-410 15-332 (549)
258 KOG0276 Vesicle coat complex C 93.2 1.8 3.9E-05 41.5 11.7 132 108-260 616-747 (794)
259 PF00637 Clathrin: Region in C 93.2 0.002 4.3E-08 50.7 -6.4 52 277-328 15-66 (143)
260 PF10602 RPN7: 26S proteasome 93.1 2.9 6.2E-05 34.1 11.8 95 270-366 37-140 (177)
261 KOG0276 Vesicle coat complex C 93.0 1.5 3.3E-05 41.9 11.1 97 184-295 648-747 (794)
262 COG3898 Uncharacterized membra 93.0 7.1 0.00015 35.6 29.4 298 85-404 68-393 (531)
263 PF10300 DUF3808: Protein of u 93.0 9 0.0002 36.8 23.6 153 176-331 191-374 (468)
264 KOG2610 Uncharacterized conser 93.0 3.3 7.1E-05 36.8 12.3 190 210-402 114-314 (491)
265 PF13428 TPR_14: Tetratricopep 92.9 0.48 1.1E-05 28.2 5.4 27 377-403 4-30 (44)
266 PF07035 Mic1: Colon cancer-as 92.8 4.2 9E-05 32.6 14.6 101 220-330 15-115 (167)
267 PF07035 Mic1: Colon cancer-as 92.8 4.2 9.1E-05 32.6 15.0 135 254-403 14-149 (167)
268 PF04184 ST7: ST7 protein; In 92.6 9.3 0.0002 36.1 16.4 75 309-383 264-340 (539)
269 PF13176 TPR_7: Tetratricopept 92.6 0.33 7.1E-06 27.4 4.1 26 376-401 1-26 (36)
270 KOG2114 Vacuolar assembly/sort 92.5 13 0.00028 37.5 25.9 72 344-423 710-785 (933)
271 KOG1585 Protein required for f 92.5 6 0.00013 33.6 16.3 204 106-326 31-249 (308)
272 COG0457 NrfG FOG: TPR repeat [ 92.4 5.6 0.00012 33.1 21.8 189 214-403 38-231 (291)
273 PF13929 mRNA_stabil: mRNA sta 92.4 7 0.00015 34.2 16.5 172 166-347 105-286 (292)
274 KOG4570 Uncharacterized conser 92.1 2.6 5.7E-05 37.0 10.5 48 284-331 115-162 (418)
275 KOG1941 Acetylcholine receptor 92.1 8 0.00017 34.9 13.6 126 274-399 127-271 (518)
276 COG1729 Uncharacterized protei 92.0 6 0.00013 34.2 12.5 97 236-333 144-244 (262)
277 PF08631 SPO22: Meiosis protei 91.8 8.8 0.00019 33.9 23.4 163 211-375 5-193 (278)
278 COG4649 Uncharacterized protei 91.4 6.3 0.00014 31.6 12.5 88 210-297 105-195 (221)
279 PF10602 RPN7: 26S proteasome 91.4 3.6 7.7E-05 33.5 10.4 98 305-402 37-141 (177)
280 KOG4570 Uncharacterized conser 91.2 1 2.2E-05 39.5 7.2 102 101-203 59-165 (418)
281 PF13176 TPR_7: Tetratricopept 91.2 0.53 1.2E-05 26.5 3.9 25 141-165 2-26 (36)
282 cd00923 Cyt_c_Oxidase_Va Cytoc 91.1 1.8 3.8E-05 30.7 7.0 45 322-366 25-69 (103)
283 PRK11906 transcriptional regul 91.0 13 0.00029 34.8 14.7 160 235-400 252-433 (458)
284 PF02284 COX5A: Cytochrome c o 90.4 2.1 4.6E-05 30.7 7.0 44 323-366 29-72 (108)
285 COG4105 ComL DNA uptake lipopr 90.4 11 0.00023 32.4 18.9 58 310-368 173-233 (254)
286 PF10345 Cohesin_load: Cohesin 90.0 22 0.00048 35.6 19.6 125 205-330 106-251 (608)
287 COG3118 Thioredoxin domain-con 89.9 13 0.00028 32.6 17.2 161 190-354 120-287 (304)
288 PF02284 COX5A: Cytochrome c o 89.8 5.8 0.00013 28.5 9.2 65 354-419 25-89 (108)
289 COG4649 Uncharacterized protei 89.7 9.3 0.0002 30.7 13.7 128 280-407 69-200 (221)
290 KOG1550 Extracellular protein 88.8 26 0.00056 34.6 19.2 119 246-369 261-394 (552)
291 PRK11906 transcriptional regul 88.7 21 0.00047 33.6 15.6 146 215-365 274-433 (458)
292 PF04184 ST7: ST7 protein; In 88.6 23 0.00049 33.7 17.2 129 185-315 212-342 (539)
293 PF02259 FAT: FAT domain; Int 88.5 20 0.00042 32.8 22.6 199 113-332 5-212 (352)
294 COG3898 Uncharacterized membra 88.4 20 0.00043 32.9 29.7 272 84-368 98-392 (531)
295 cd00923 Cyt_c_Oxidase_Va Cytoc 88.1 7.6 0.00016 27.7 9.1 64 354-418 22-85 (103)
296 PF00637 Clathrin: Region in C 87.4 0.46 1E-05 37.1 2.4 84 205-295 13-96 (143)
297 PF09613 HrpB1_HrpK: Bacterial 87.4 13 0.00028 29.5 13.2 52 245-298 21-73 (160)
298 PF13374 TPR_10: Tetratricopep 87.2 1.7 3.6E-05 25.1 4.3 28 375-402 3-30 (42)
299 PF00515 TPR_1: Tetratricopept 87.2 1.7 3.6E-05 23.8 4.1 27 376-402 3-29 (34)
300 PRK15180 Vi polysaccharide bio 87.0 28 0.0006 32.9 14.8 120 210-333 300-420 (831)
301 PF11207 DUF2989: Protein of u 86.9 7.2 0.00016 32.2 8.9 21 303-323 177-197 (203)
302 COG1747 Uncharacterized N-term 86.7 30 0.00065 33.0 22.4 163 233-402 65-233 (711)
303 PF00515 TPR_1: Tetratricopept 86.7 2.1 4.5E-05 23.4 4.3 29 139-167 2-30 (34)
304 PF13762 MNE1: Mitochondrial s 86.4 14 0.0003 28.8 11.3 81 342-422 42-128 (145)
305 COG3947 Response regulator con 86.0 23 0.0005 31.1 15.8 72 341-413 281-357 (361)
306 PF13431 TPR_17: Tetratricopep 85.9 1.1 2.5E-05 24.8 2.8 18 306-323 15-32 (34)
307 PF11207 DUF2989: Protein of u 85.6 9.3 0.0002 31.5 8.9 72 321-393 123-197 (203)
308 PF13431 TPR_17: Tetratricopep 85.6 1.1 2.4E-05 24.9 2.7 20 138-157 13-32 (34)
309 PF13374 TPR_10: Tetratricopep 85.0 2.4 5.2E-05 24.3 4.2 27 139-165 3-29 (42)
310 PF09613 HrpB1_HrpK: Bacterial 83.8 20 0.00043 28.5 12.6 53 279-333 20-73 (160)
311 PF07719 TPR_2: Tetratricopept 83.0 3.8 8.3E-05 22.2 4.3 29 139-167 2-30 (34)
312 PF07719 TPR_2: Tetratricopept 82.4 4.2 9.2E-05 22.0 4.3 29 375-403 2-30 (34)
313 KOG2063 Vacuolar assembly/sort 81.8 69 0.0015 33.3 15.5 37 191-227 496-532 (877)
314 TIGR03504 FimV_Cterm FimV C-te 81.4 4.1 8.9E-05 24.3 4.0 22 381-402 6-27 (44)
315 PRK09687 putative lyase; Provi 81.4 38 0.00083 30.0 26.5 184 217-421 90-279 (280)
316 PF04097 Nic96: Nup93/Nic96; 81.1 64 0.0014 32.4 15.8 47 105-151 110-158 (613)
317 TIGR02561 HrpB1_HrpK type III 81.0 24 0.00053 27.5 11.1 51 281-333 22-73 (153)
318 COG4455 ImpE Protein of avirul 80.9 17 0.00036 30.5 8.5 77 306-383 3-81 (273)
319 PF08311 Mad3_BUB1_I: Mad3/BUB 80.8 22 0.00048 27.0 8.9 59 72-130 65-123 (126)
320 PRK15180 Vi polysaccharide bio 80.4 27 0.0006 32.9 10.7 86 281-368 335-420 (831)
321 PF11848 DUF3368: Domain of un 79.7 8.5 0.00018 23.4 5.1 33 385-417 13-45 (48)
322 KOG1550 Extracellular protein 79.5 68 0.0015 31.7 22.8 176 154-334 228-427 (552)
323 PF13181 TPR_8: Tetratricopept 79.0 6.5 0.00014 21.3 4.3 27 376-402 3-29 (34)
324 PF07163 Pex26: Pex26 protein; 78.9 25 0.00055 30.7 9.3 87 206-292 90-181 (309)
325 COG3947 Response regulator con 78.8 46 0.00099 29.4 15.0 71 306-377 281-356 (361)
326 KOG2659 LisH motif-containing 78.8 30 0.00065 29.2 9.6 98 100-197 20-127 (228)
327 PF13181 TPR_8: Tetratricopept 78.7 6.2 0.00013 21.4 4.2 27 140-166 3-29 (34)
328 PF07575 Nucleopor_Nup85: Nup8 78.5 74 0.0016 31.6 17.6 95 305-403 373-467 (566)
329 PF07163 Pex26: Pex26 protein; 78.3 32 0.0007 30.0 9.8 81 177-257 87-181 (309)
330 KOG0292 Vesicle coat complex C 77.6 14 0.0003 37.6 8.4 152 78-263 628-782 (1202)
331 COG4455 ImpE Protein of avirul 77.5 21 0.00046 29.9 8.2 77 271-348 3-81 (273)
332 PF07721 TPR_4: Tetratricopept 77.2 4.2 9.2E-05 20.8 2.9 20 379-398 6-25 (26)
333 PF13174 TPR_6: Tetratricopept 77.1 4.7 0.0001 21.6 3.3 24 380-403 6-29 (33)
334 KOG4077 Cytochrome c oxidase, 76.9 18 0.0004 27.2 7.0 42 325-366 70-111 (149)
335 TIGR03504 FimV_Cterm FimV C-te 76.6 6.6 0.00014 23.4 3.9 22 311-332 6-27 (44)
336 PF06552 TOM20_plant: Plant sp 73.9 43 0.00094 27.2 8.9 14 371-384 110-123 (186)
337 KOG1464 COP9 signalosome, subu 73.8 60 0.0013 28.3 16.7 69 132-200 20-92 (440)
338 KOG4234 TPR repeat-containing 73.7 42 0.00091 27.8 8.8 21 313-333 177-197 (271)
339 KOG0292 Vesicle coat complex C 73.4 28 0.00061 35.5 9.3 158 111-298 625-782 (1202)
340 KOG4648 Uncharacterized conser 72.9 13 0.00028 33.3 6.3 52 114-165 105-158 (536)
341 smart00777 Mad3_BUB1_I Mad3/BU 72.9 27 0.00058 26.5 7.3 44 119-162 79-123 (125)
342 PF02259 FAT: FAT domain; Int 71.9 79 0.0017 28.8 23.4 66 302-367 144-212 (352)
343 PF10579 Rapsyn_N: Rapsyn N-te 71.4 13 0.00028 25.4 4.7 17 307-323 46-62 (80)
344 COG4785 NlpI Lipoprotein NlpI, 71.3 62 0.0013 27.3 13.8 49 122-170 81-131 (297)
345 KOG4077 Cytochrome c oxidase, 70.6 35 0.00075 25.8 7.1 61 356-417 66-126 (149)
346 KOG0687 26S proteasome regulat 69.9 84 0.0018 28.3 14.6 176 248-425 36-232 (393)
347 COG2909 MalT ATP-dependent tra 69.7 1.4E+02 0.0031 30.8 28.1 191 209-399 468-684 (894)
348 PF11846 DUF3366: Domain of un 69.3 13 0.00028 30.7 5.6 34 133-166 139-172 (193)
349 KOG2066 Vacuolar assembly/sort 68.8 1.4E+02 0.003 30.4 18.5 56 145-202 363-421 (846)
350 COG0735 Fur Fe2+/Zn2+ uptake r 68.8 24 0.00053 27.6 6.6 64 361-425 8-71 (145)
351 COG2909 MalT ATP-dependent tra 68.8 1.5E+02 0.0032 30.7 20.7 196 210-405 426-649 (894)
352 PF10579 Rapsyn_N: Rapsyn N-te 68.7 19 0.00042 24.6 5.1 46 351-396 18-65 (80)
353 COG2976 Uncharacterized protei 68.4 67 0.0014 26.5 13.4 125 270-404 55-189 (207)
354 KOG4648 Uncharacterized conser 67.7 45 0.00097 30.1 8.5 91 206-298 104-194 (536)
355 PF11663 Toxin_YhaV: Toxin wit 67.2 6.5 0.00014 29.9 2.9 30 282-313 108-137 (140)
356 PF04190 DUF410: Protein of un 67.0 88 0.0019 27.4 17.2 58 118-187 2-63 (260)
357 COG2976 Uncharacterized protei 66.8 72 0.0016 26.4 12.7 53 244-298 136-188 (207)
358 COG5108 RPO41 Mitochondrial DN 66.5 35 0.00075 33.7 8.1 91 309-402 33-131 (1117)
359 TIGR02561 HrpB1_HrpK type III 66.2 62 0.0014 25.4 12.2 90 245-339 21-112 (153)
360 COG5187 RPN7 26S proteasome re 65.2 99 0.0021 27.3 13.6 26 270-295 116-141 (412)
361 KOG1586 Protein required for f 65.1 88 0.0019 26.7 17.9 19 211-229 166-184 (288)
362 COG2178 Predicted RNA-binding 65.0 78 0.0017 26.1 9.0 15 317-331 134-148 (204)
363 PRK11639 zinc uptake transcrip 64.8 36 0.00078 27.5 7.1 38 387-424 38-75 (169)
364 PHA02875 ankyrin repeat protei 64.8 1.3E+02 0.0027 28.4 17.9 17 113-129 39-55 (413)
365 TIGR02508 type_III_yscG type I 64.6 51 0.0011 23.8 7.5 78 320-404 21-98 (115)
366 PF07064 RIC1: RIC1; InterPro 64.6 98 0.0021 27.0 15.5 84 179-262 159-248 (258)
367 KOG2066 Vacuolar assembly/sort 64.2 1.7E+02 0.0037 29.8 24.4 52 113-164 363-418 (846)
368 PF14689 SPOB_a: Sensor_kinase 63.1 19 0.0004 23.3 4.2 21 310-330 29-49 (62)
369 PF11846 DUF3366: Domain of un 62.9 45 0.00097 27.5 7.6 32 371-402 141-172 (193)
370 PF14689 SPOB_a: Sensor_kinase 62.9 23 0.00051 22.9 4.6 27 376-402 25-51 (62)
371 PF11768 DUF3312: Protein of u 62.8 1.6E+02 0.0034 28.8 12.2 94 108-202 410-507 (545)
372 PRK10564 maltose regulon perip 62.7 17 0.00037 32.1 5.0 30 342-371 260-289 (303)
373 PF06552 TOM20_plant: Plant sp 62.5 84 0.0018 25.6 9.4 117 154-299 7-137 (186)
374 PF11848 DUF3368: Domain of un 62.3 32 0.0007 20.8 4.9 31 351-381 14-44 (48)
375 cd07153 Fur_like Ferric uptake 61.4 18 0.00039 26.9 4.5 46 380-425 6-51 (116)
376 KOG4234 TPR repeat-containing 61.1 97 0.0021 25.8 9.3 90 278-368 104-197 (271)
377 smart00028 TPR Tetratricopepti 61.0 17 0.00037 18.3 3.4 27 140-166 3-29 (34)
378 COG4785 NlpI Lipoprotein NlpI, 60.7 1E+02 0.0022 26.0 18.0 159 234-404 99-267 (297)
379 KOG0991 Replication factor C, 60.6 1.1E+02 0.0024 26.3 12.9 103 279-385 169-283 (333)
380 PRK11639 zinc uptake transcrip 60.4 59 0.0013 26.2 7.6 67 122-189 10-76 (169)
381 PRK11619 lytic murein transgly 60.4 2E+02 0.0043 29.2 30.3 99 91-192 84-182 (644)
382 KOG1464 COP9 signalosome, subu 60.2 1.2E+02 0.0026 26.5 17.8 193 167-360 20-252 (440)
383 KOG0890 Protein kinase of the 59.5 3.5E+02 0.0076 31.8 24.8 302 82-403 1395-1731(2382)
384 KOG2297 Predicted translation 59.2 1.3E+02 0.0029 26.8 15.5 17 271-287 323-339 (412)
385 PRK10564 maltose regulon perip 58.4 21 0.00046 31.5 4.9 30 307-336 260-289 (303)
386 PRK09462 fur ferric uptake reg 58.3 52 0.0011 25.8 6.8 37 389-425 32-68 (148)
387 KOG4567 GTPase-activating prot 58.2 68 0.0015 28.5 7.7 71 324-399 263-343 (370)
388 PF04097 Nic96: Nup93/Nic96; 57.8 2.1E+02 0.0046 28.8 12.6 21 314-337 515-535 (613)
389 KOG2062 26S proteasome regulat 57.8 2.2E+02 0.0048 28.9 12.0 16 116-131 367-382 (929)
390 KOG1258 mRNA processing protei 56.5 2.1E+02 0.0045 28.2 18.0 175 172-353 296-489 (577)
391 COG0735 Fur Fe2+/Zn2+ uptake r 56.1 94 0.002 24.3 7.8 66 122-188 5-70 (145)
392 PRK09857 putative transposase; 56.0 1.1E+02 0.0024 27.3 9.1 64 344-408 211-274 (292)
393 KOG1258 mRNA processing protei 55.8 2.1E+02 0.0046 28.1 32.8 185 233-423 296-489 (577)
394 PF01475 FUR: Ferric uptake re 55.7 17 0.00037 27.2 3.6 48 378-425 11-58 (120)
395 COG5159 RPN6 26S proteasome re 55.7 1.5E+02 0.0032 26.3 11.2 19 345-363 131-149 (421)
396 PF07575 Nucleopor_Nup85: Nup8 55.6 31 0.00068 34.2 6.3 27 106-133 149-175 (566)
397 cd08819 CARD_MDA5_2 Caspase ac 55.1 71 0.0015 22.4 7.3 14 318-331 50-63 (88)
398 PF11663 Toxin_YhaV: Toxin wit 54.9 16 0.00034 27.9 3.1 30 212-243 108-137 (140)
399 PRK13342 recombination factor 54.3 2E+02 0.0043 27.3 18.1 117 155-281 154-277 (413)
400 COG5108 RPO41 Mitochondrial DN 53.6 1.3E+02 0.0028 30.0 9.5 91 274-367 33-131 (1117)
401 PF13762 MNE1: Mitochondrial s 53.3 1.1E+02 0.0023 24.0 11.9 82 236-317 41-128 (145)
402 KOG0403 Neoplastic transformat 53.0 2.1E+02 0.0045 27.2 19.9 62 342-404 512-573 (645)
403 cd00280 TRFH Telomeric Repeat 52.7 1.2E+02 0.0026 24.8 7.8 67 320-389 85-158 (200)
404 PF10366 Vps39_1: Vacuolar sor 50.6 98 0.0021 22.7 8.7 26 237-262 42-67 (108)
405 PF09454 Vps23_core: Vps23 cor 50.1 47 0.001 21.8 4.4 49 337-386 6-54 (65)
406 PHA02875 ankyrin repeat protei 49.9 2.3E+02 0.0049 26.7 17.1 80 113-197 6-89 (413)
407 PF10345 Cohesin_load: Cohesin 49.8 2.9E+02 0.0062 27.8 31.1 65 350-414 372-452 (608)
408 KOG2297 Predicted translation 48.6 2E+02 0.0044 25.7 17.6 19 374-392 321-339 (412)
409 cd08819 CARD_MDA5_2 Caspase ac 48.2 94 0.002 21.8 7.3 66 323-394 21-86 (88)
410 cd00280 TRFH Telomeric Repeat 47.8 1.6E+02 0.0034 24.2 7.9 67 284-353 84-157 (200)
411 PRK10304 ferritin; Provisional 47.7 1.5E+02 0.0032 23.9 7.9 96 173-287 21-116 (165)
412 PF11817 Foie-gras_1: Foie gra 46.9 1.2E+02 0.0026 26.3 7.8 59 343-401 182-245 (247)
413 smart00386 HAT HAT (Half-A-TPR 46.4 43 0.00093 17.3 3.8 14 354-367 2-15 (33)
414 KOG4507 Uncharacterized conser 46.1 1.5E+02 0.0033 29.1 8.6 57 112-168 255-313 (886)
415 KOG2396 HAT (Half-A-TPR) repea 45.8 2.9E+02 0.0062 26.7 18.6 99 232-333 457-559 (568)
416 PF14669 Asp_Glu_race_2: Putat 45.7 1.7E+02 0.0038 24.2 14.7 55 274-328 137-205 (233)
417 PRK13342 recombination factor 45.0 2.8E+02 0.006 26.3 18.8 157 216-391 154-322 (413)
418 COG0790 FOG: TPR repeat, SEL1 44.1 2.3E+02 0.0049 25.0 24.2 156 248-413 91-276 (292)
419 PF08311 Mad3_BUB1_I: Mad3/BUB 44.1 1.4E+02 0.003 22.6 9.0 45 154-198 79-124 (126)
420 PF03745 DUF309: Domain of unk 44.0 88 0.0019 20.3 5.3 48 350-397 10-62 (62)
421 PF10366 Vps39_1: Vacuolar sor 43.8 1.3E+02 0.0028 22.1 9.3 27 271-297 41-67 (108)
422 PF14669 Asp_Glu_race_2: Putat 43.5 1.9E+02 0.0041 24.0 14.6 57 343-399 136-206 (233)
423 PF04910 Tcf25: Transcriptiona 43.4 2.7E+02 0.0059 25.8 19.0 156 116-281 20-191 (360)
424 KOG0686 COP9 signalosome, subu 43.3 2.8E+02 0.0062 26.0 12.9 58 205-262 156-215 (466)
425 KOG0403 Neoplastic transformat 43.2 3E+02 0.0065 26.2 16.7 92 237-333 512-611 (645)
426 PF10475 DUF2450: Protein of u 43.0 1.6E+02 0.0035 26.2 8.2 22 267-288 195-216 (291)
427 PF09670 Cas_Cas02710: CRISPR- 42.8 2.9E+02 0.0062 25.8 11.6 55 145-200 138-196 (379)
428 PF00244 14-3-3: 14-3-3 protei 42.7 2.2E+02 0.0048 24.5 10.3 48 355-402 142-197 (236)
429 KOG4567 GTPase-activating prot 42.6 1.5E+02 0.0033 26.5 7.5 72 289-365 263-344 (370)
430 COG0790 FOG: TPR repeat, SEL1 42.2 2.4E+02 0.0053 24.8 20.2 85 83-171 54-146 (292)
431 KOG1941 Acetylcholine receptor 42.2 2.8E+02 0.0061 25.6 20.3 222 82-330 18-272 (518)
432 cd07153 Fur_like Ferric uptake 42.1 69 0.0015 23.6 5.0 43 277-319 8-50 (116)
433 PF02847 MA3: MA3 domain; Int 41.8 1.4E+02 0.003 21.8 7.0 21 275-295 8-28 (113)
434 PF08314 Sec39: Secretory path 41.6 2.2E+02 0.0047 29.4 9.9 31 104-134 430-460 (715)
435 PF10475 DUF2450: Protein of u 41.4 2.6E+02 0.0056 24.9 9.4 113 239-362 103-220 (291)
436 PRK11619 lytic murein transgly 41.3 4E+02 0.0087 27.1 23.9 250 82-338 253-510 (644)
437 PF09454 Vps23_core: Vps23 cor 41.3 75 0.0016 20.8 4.3 48 302-350 6-53 (65)
438 PF11817 Foie-gras_1: Foie gra 40.8 1.5E+02 0.0033 25.6 7.6 57 309-365 183-244 (247)
439 PF02847 MA3: MA3 domain; Int 40.1 1.5E+02 0.0032 21.7 7.2 61 308-370 6-68 (113)
440 PF08424 NRDE-2: NRDE-2, neces 39.7 2.9E+02 0.0063 25.0 17.0 118 286-405 48-185 (321)
441 PRK09462 fur ferric uptake reg 39.2 1.9E+02 0.004 22.6 7.5 63 126-189 5-68 (148)
442 KOG4507 Uncharacterized conser 38.8 2.4E+02 0.0052 27.9 8.7 101 316-418 619-719 (886)
443 COG5159 RPN6 26S proteasome re 38.2 2.9E+02 0.0063 24.6 15.3 133 209-341 13-166 (421)
444 PF02184 HAT: HAT (Half-A-TPR) 38.1 53 0.0011 18.0 2.7 25 389-415 2-26 (32)
445 PF13934 ELYS: Nuclear pore co 37.8 2.6E+02 0.0056 23.9 9.5 91 66-160 104-198 (226)
446 PF12862 Apc5: Anaphase-promot 37.6 1.5E+02 0.0032 21.0 6.9 22 381-402 48-69 (94)
447 KOG1114 Tripeptidyl peptidase 37.4 5.3E+02 0.011 27.4 13.6 68 356-423 1213-1281(1304)
448 PRK13341 recombination factor 37.4 4.9E+02 0.011 26.9 17.7 127 168-301 192-330 (725)
449 TIGR03581 EF_0839 conserved hy 37.4 1.2E+02 0.0026 25.5 5.8 62 340-401 164-235 (236)
450 KOG3807 Predicted membrane pro 36.9 3.1E+02 0.0068 24.9 8.6 119 285-414 232-351 (556)
451 PF15297 CKAP2_C: Cytoskeleton 36.6 3.4E+02 0.0073 24.9 9.5 61 286-348 120-184 (353)
452 PRK09857 putative transposase; 36.5 3.1E+02 0.0068 24.5 9.0 29 345-373 246-274 (292)
453 COG2178 Predicted RNA-binding 36.2 2.5E+02 0.0054 23.3 9.7 18 385-402 132-149 (204)
454 PF01475 FUR: Ferric uptake re 36.1 71 0.0015 23.8 4.3 43 276-318 14-56 (120)
455 TIGR02508 type_III_yscG type I 36.1 1.7E+02 0.0037 21.3 9.1 87 84-176 19-105 (115)
456 PF12926 MOZART2: Mitotic-spin 36.0 1.5E+02 0.0033 20.7 7.8 43 360-402 29-71 (88)
457 PF14853 Fis1_TPR_C: Fis1 C-te 35.7 1.1E+02 0.0024 19.0 5.2 23 346-368 8-30 (53)
458 PRK14956 DNA polymerase III su 35.7 4.2E+02 0.0091 25.7 12.5 36 338-373 247-282 (484)
459 cd07229 Pat_TGL3_like Triacylg 35.6 1.7E+02 0.0037 27.4 7.3 18 406-423 234-251 (391)
460 PHA02798 ankyrin-like protein; 35.0 4.3E+02 0.0093 25.6 11.5 49 288-338 88-139 (489)
461 KOG0686 COP9 signalosome, subu 35.0 3.9E+02 0.0084 25.1 13.4 55 174-228 151-216 (466)
462 PF12862 Apc5: Anaphase-promot 35.0 1.6E+02 0.0035 20.7 6.5 18 182-199 50-67 (94)
463 PF09670 Cas_Cas02710: CRISPR- 34.7 3.9E+02 0.0084 25.0 11.8 56 242-298 139-198 (379)
464 KOG0991 Replication factor C, 34.4 3E+02 0.0066 23.7 11.8 46 302-349 237-282 (333)
465 PF02607 B12-binding_2: B12 bi 34.1 63 0.0014 21.8 3.4 39 351-389 13-51 (79)
466 PF09868 DUF2095: Uncharacteri 33.7 1.7E+02 0.0037 21.7 5.4 44 75-120 66-109 (128)
467 PHA02989 ankyrin repeat protei 32.9 4.1E+02 0.0089 25.8 10.0 16 288-303 87-102 (494)
468 COG0819 TenA Putative transcri 32.7 2.7E+02 0.0058 23.6 7.4 60 293-352 98-168 (218)
469 PF08424 NRDE-2: NRDE-2, neces 32.6 3.8E+02 0.0083 24.3 16.7 136 233-370 18-185 (321)
470 PF04910 Tcf25: Transcriptiona 32.4 4.1E+02 0.0089 24.6 20.8 169 172-349 39-234 (360)
471 PF09477 Type_III_YscG: Bacter 32.4 2.1E+02 0.0045 21.1 8.9 81 317-404 19-99 (116)
472 PF12926 MOZART2: Mitotic-spin 32.2 1.8E+02 0.0039 20.4 7.6 42 159-200 29-70 (88)
473 PF12796 Ank_2: Ankyrin repeat 32.1 1.5E+02 0.0033 20.2 5.3 15 116-130 4-18 (89)
474 PRK08691 DNA polymerase III su 31.8 5.8E+02 0.013 26.2 11.9 84 285-371 180-277 (709)
475 PRK14700 recombination factor 31.8 3.8E+02 0.0082 24.0 9.9 100 233-332 122-229 (300)
476 PF03745 DUF309: Domain of unk 31.6 1.5E+02 0.0032 19.2 5.2 15 281-295 11-25 (62)
477 PF07678 A2M_comp: A-macroglob 31.6 3.3E+02 0.0072 23.5 8.2 22 382-403 200-221 (246)
478 PRK14958 DNA polymerase III su 31.2 5.2E+02 0.011 25.4 12.2 85 286-373 181-279 (509)
479 KOG1524 WD40 repeat-containing 31.2 3.5E+02 0.0075 26.4 8.4 62 102-166 569-630 (737)
480 KOG0989 Replication factor C, 31.1 4E+02 0.0087 24.1 9.9 42 295-338 201-242 (346)
481 KOG4642 Chaperone-dependent E3 31.1 3.5E+02 0.0076 23.4 10.7 117 209-329 20-142 (284)
482 PF08870 DUF1832: Domain of un 30.5 1.5E+02 0.0032 22.1 4.9 90 87-187 6-96 (113)
483 PF09986 DUF2225: Uncharacteri 30.2 3.4E+02 0.0073 22.9 10.1 25 379-403 170-194 (214)
484 KOG2582 COP9 signalosome, subu 29.5 4.6E+02 0.0099 24.3 16.0 55 350-404 288-346 (422)
485 KOG3677 RNA polymerase I-assoc 29.4 4.9E+02 0.011 24.6 10.1 62 235-296 236-299 (525)
486 PLN03025 replication factor C 28.5 4.4E+02 0.0096 23.8 12.5 102 321-427 162-275 (319)
487 KOG1308 Hsp70-interacting prot 28.5 1.2E+02 0.0026 27.6 4.8 90 209-301 124-214 (377)
488 PF11123 DNA_Packaging_2: DNA 28.4 1.9E+02 0.0041 19.5 5.5 61 86-166 13-73 (82)
489 PF04762 IKI3: IKI3 family; I 27.9 7.8E+02 0.017 26.4 15.2 30 304-333 812-843 (928)
490 KOG0376 Serine-threonine phosp 27.9 1.6E+02 0.0034 28.1 5.7 102 243-349 13-115 (476)
491 PF10963 DUF2765: Protein of u 27.7 1.4E+02 0.0031 20.7 4.1 32 101-132 11-42 (83)
492 PF08461 HTH_12: Ribonuclease 27.7 1.8E+02 0.0039 19.0 4.6 36 388-423 11-46 (66)
493 KOG2422 Uncharacterized conser 27.5 6.2E+02 0.013 25.1 16.2 173 106-284 284-498 (665)
494 PHA03100 ankyrin repeat protei 27.3 5.6E+02 0.012 24.6 13.7 67 116-187 80-152 (480)
495 PF00244 14-3-3: 14-3-3 protei 27.3 4E+02 0.0087 22.9 10.0 58 205-262 7-65 (236)
496 PRK10941 hypothetical protein; 27.2 4.4E+02 0.0094 23.3 11.0 56 345-401 187-242 (269)
497 KOG1308 Hsp70-interacting prot 27.1 1.2E+02 0.0025 27.6 4.5 83 185-268 126-216 (377)
498 KOG4279 Serine/threonine prote 27.1 7.1E+02 0.015 25.7 12.6 184 216-403 180-395 (1226)
499 KOG0376 Serine-threonine phosp 26.9 2.2E+02 0.0048 27.2 6.4 104 276-385 11-116 (476)
500 smart00804 TAP_C C-terminal do 26.8 1.9E+02 0.004 18.9 4.6 25 83-107 38-62 (63)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=9e-57 Score=450.21 Aligned_cols=343 Identities=20% Similarity=0.328 Sum_probs=246.1
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh---cCCCCCHHhHHHHHHHHHhcCChh
Q 045814 79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIE 155 (427)
Q Consensus 79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~ 155 (427)
.+.+.+....|+.+|+.+. .||..+|+.++.+|++.|+++.|.++|++ .|+.||..+|+.||.+|++.|+++
T Consensus 415 ~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd 489 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD 489 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence 3445566666666666663 26777777777777777777777777665 366677777777777777777777
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---------hhHHHHHhcCChhHHHHHHHHHH
Q 045814 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVL 226 (427)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~l~~~~~~~g~~~~a~~~~~~~~ 226 (427)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+ .++.+|++.|++++|.++|++|.
T Consensus 490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777776543 36777777777777777777776
Q ss_pred H--CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 045814 227 E--DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304 (427)
Q Consensus 227 ~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 304 (427)
. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 4 45667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 384 (427)
.+|+++|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le 771 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence 777777777777777777777777777777777777777654
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-55 Score=441.78 Aligned_cols=344 Identities=15% Similarity=0.273 Sum_probs=330.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcC
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESG 152 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~ 152 (427)
+...+.+.++.+.|.++|+.|. +.|+.||..+|+.+|.+|++.|+++.|.++|++| |+.||..+|+.+|.+|++.|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 3344557799999999999995 5689999999999999999999999999999975 78899999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----------chhHHHHHhcCChhHHHHH
Q 045814 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----------GYLIQAFCNDGKVSEGYEL 221 (427)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~l~~~~~~~g~~~~a~~~ 221 (427)
++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|... +.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999752 3599999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 045814 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV 301 (427)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 301 (427)
|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.++|++|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 045814 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC 420 (427)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 420 (427)
.+|++.|++++|.+++++|.+.|+.||..+|++++..|.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997643
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-52 Score=414.03 Aligned_cols=339 Identities=17% Similarity=0.191 Sum_probs=308.7
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814 79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 158 (427)
.+.+.++...+.+++..+. +.|+.||..+||.++..|++.|+++.|.++|+++. .||..+||++|.+|++.|++++|+
T Consensus 132 a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~ 209 (697)
T PLN03081 132 ACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAF 209 (697)
T ss_pred HHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHH
Confidence 3446678888999998884 45899999999999999999999999999999987 689999999999999999999999
Q ss_pred HHHHHHHhcCCCcCH-----------------------------------hhHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 045814 159 CAFSKLKEMGVFGSI-----------------------------------KTWNSALLGCIKIDRTDLVWKLYHDLIES- 202 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~-----------------------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~- 202 (427)
++|++|.+.|+.|+. .+|++|+++|++.|++++|.++|++|...
T Consensus 210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~ 289 (697)
T PLN03081 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT 289 (697)
T ss_pred HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 999999877766654 45577788888999999999999988765
Q ss_pred ----chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 045814 203 ----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING 278 (427)
Q Consensus 203 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 278 (427)
+.++.+|++.|+.++|+++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++
T Consensus 290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~ 369 (697)
T PLN03081 290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL 369 (697)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 358 (427)
|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|
T Consensus 370 y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a 445 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG 445 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence 9999999999999999964 688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 359 KRLHKEMLD-KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 359 ~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|+..|+++
T Consensus 446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~ 511 (697)
T PLN03081 446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE 511 (697)
T ss_pred HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence 999999976 589999999999999999999999999998766 57899999999999999999875
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-51 Score=407.44 Aligned_cols=338 Identities=17% Similarity=0.309 Sum_probs=296.7
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh---cCCCCCHHhHHHHHHHHHhcCCh
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI 154 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~~~~~ 154 (427)
..+...+++..|+++|+++....++.||..+|+.++.+|++.++++.+.+++.. .|+.||..+||.|+.+|++.|++
T Consensus 95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~ 174 (697)
T PLN03081 95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML 174 (697)
T ss_pred HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence 345567899999999999987777899999999999999999999999998875 58899999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-------------------------------
Q 045814 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------------------------------- 203 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 203 (427)
++|.++|++|. .||..+|++++.+|++.|++++|.++|++|.+.|
T Consensus 175 ~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 175 IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999996 4799999999999999999999999999997642
Q ss_pred -------------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814 204 -------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270 (427)
Q Consensus 204 -------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 270 (427)
.++.+|++.|++++|.++|++|.. +|..+||++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~ 326 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 367788888888888888888753 577888888888888888888888888888888888888
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
||+.++.+|++.|++++|.+++..|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+ ||..+||++|.+|+
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~ 402 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG 402 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888853 67888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-KGIFRDVITYNTLIQGYCKEGKIVN 427 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~e 427 (427)
+.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|+++|
T Consensus 403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 8888888888888888888888888888888888888888888888888876 5888888888888888888888764
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.8e-50 Score=406.53 Aligned_cols=342 Identities=15% Similarity=0.207 Sum_probs=277.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcC
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESG 152 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~ 152 (427)
+...+.+.++++.|.++|+.+. .||..+||.+|.+|++.|++++|.++|++| |+.||..||+.++.+|++.|
T Consensus 228 Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 228 LITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 3445566778888888888873 477888888888888888888888888763 77888888888888888888
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----chhHHHHHhcCChhHHHHHHHHHHH
Q 045814 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLE 227 (427)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (427)
+++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|... +.++.+|++.|++++|+++|++|..
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 88888888888888888888888999999999999999999999988765 4689999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 307 (427)
.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+ +|..+|
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~ 458 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISW 458 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeH
Confidence 9999999999999999999999999999999999999999999999999999999999888888888864 355666
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCC--------------------------------------------------
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLP-------------------------------------------------- 337 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-------------------------------------------------- 337 (427)
+++|.+|++.|+.++|..+|++|.. ++.|
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 6666666666666666666666653 2333
Q ss_pred ---------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 045814 338 ---------------NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA- 401 (427)
Q Consensus 338 ---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 401 (427)
|..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.
T Consensus 538 G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 538 GRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred CCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence 4455666777777777777788888888877888888888888888888888888888888887
Q ss_pred HCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814 402 QKGIFRDVITYNTLIQGYCKEGKIVN 427 (427)
Q Consensus 402 ~~g~~p~~~~~~~li~~~~~~g~~~e 427 (427)
+.|+.|+..+|++++++|++.|+++|
T Consensus 618 ~~gi~P~~~~y~~lv~~l~r~G~~~e 643 (857)
T PLN03077 618 KYSITPNLKHYACVVDLLGRAGKLTE 643 (857)
T ss_pred HhCCCCchHHHHHHHHHHHhCCCHHH
Confidence 56788888888888888888887653
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.2e-48 Score=397.40 Aligned_cols=335 Identities=18% Similarity=0.243 Sum_probs=267.7
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 045814 81 KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160 (427)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 160 (427)
...++.+.+.+++..+. ..|+.||..+||.|+.+|++.|++++|.++|+++. .||..+||++|.+|++.|++++|+++
T Consensus 299 ~~~g~~~~a~~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~l 376 (857)
T PLN03077 299 ELLGDERLGREMHGYVV-KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALET 376 (857)
T ss_pred HhcCChHHHHHHHHHHH-HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence 34455555555555553 34677788888888888888888888888888876 57888888888888888888888888
Q ss_pred HHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---------hhHHHHHh--------------------
Q 045814 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN-------------------- 211 (427)
Q Consensus 161 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~l~~~~~~-------------------- 211 (427)
|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.| .++.+|++
T Consensus 377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v 456 (857)
T PLN03077 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI 456 (857)
T ss_pred HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence 8888888888888777777777776666666666666666553 24444444
Q ss_pred -----------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 045814 212 -----------DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280 (427)
Q Consensus 212 -----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 280 (427)
.|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+++.++++|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 4455555555555543 3556666666666666666666666666666666666666667777777888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360 (427)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 360 (427)
+.|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 888888888888776 479999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 361 LHKEML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 361 ~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
+|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|. +.||..+|++|+.+|..+|+++
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChH
Confidence 999999 67999999999999999999999999999999994 7899999999999999888764
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.93 E-value=2.1e-21 Score=200.93 Aligned_cols=340 Identities=13% Similarity=0.092 Sum_probs=284.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCCh
Q 045814 77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLI 154 (427)
Q Consensus 77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~ 154 (427)
..++...++.+.|..+|..+... .+.+...+..+...+.+.|++++|..+++++ ..+.+...|..+..+|...|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence 34555678888898888887553 2445677888888899999999999998873 2345677899999999999999
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHH
Q 045814 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVL 226 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~ 226 (427)
++|...|+++.+.... +...+..+..++...|++++|...|+.+.+.+ .+...+...|++++|.++++.+.
T Consensus 618 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998876433 67778888899999999999999999887763 37788889999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 045814 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306 (427)
Q Consensus 227 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 306 (427)
.... .+...+..+...+...|++++|.+.++.+...+ |+..++..+...+.+.|++++|.+.++.+.+.... +...
T Consensus 697 ~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~ 772 (899)
T TIGR02917 697 KQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVL 772 (899)
T ss_pred hhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence 7764 367788888899999999999999999998875 44467778889999999999999999999877543 7778
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 386 (427)
+..+...|...|+.++|..+|+++.+.. +.+..+++.+...+...|+ .+|..+++++.+.. +-+..++..+...+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 8889999999999999999999999875 3477889999999999999 88999999998763 2356778888999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427 (427)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 427 (427)
.|++++|.++|+++.+.+.. +..++..+..++++.|+.++
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~ 889 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAE 889 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999998765 89999999999999998764
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.91 E-value=3.6e-20 Score=191.84 Aligned_cols=336 Identities=10% Similarity=0.051 Sum_probs=181.9
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCChhHH
Q 045814 80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A 157 (427)
+...++++.|+.+++.+... .+.+..++..+...+...|++++|.+.|++. ...| +...+..+...+...|++++|
T Consensus 441 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 518 (899)
T TIGR02917 441 YLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA 518 (899)
T ss_pred HHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence 33456666666666666442 3445566666666666667777776666652 2222 344555566666666666666
Q ss_pred HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDG 229 (427)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~ 229 (427)
.+.|+++.+.+.. +..++..+...+.+.|+.++|..+++++...+ .++..+...|++++|..+++.+....
T Consensus 519 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 597 (899)
T TIGR02917 519 IQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA 597 (899)
T ss_pred HHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 6666666654332 45556666666666666666666666654432 24455555555555555555555432
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--------
Q 045814 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-------- 301 (427)
Q Consensus 230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-------- 301 (427)
. .+..+|..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.+....
T Consensus 598 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 675 (899)
T TIGR02917 598 P-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL 675 (899)
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 2 244455555555555555555555555555442 123344445555555555555555555555443221
Q ss_pred -------------------------CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814 302 -------------------------PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356 (427)
Q Consensus 302 -------------------------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (427)
.+...+..+...+...|++++|...++++...+ |+..++..+..++.+.|+++
T Consensus 676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence 133444444455555555555555555555442 23344444555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424 (427)
Q Consensus 357 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 424 (427)
+|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++.+.. +.+...+..+...+.+.|+
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence 5555555555442 2345555566666666666666666666665543 2345556666666655554
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.91 E-value=2.8e-21 Score=180.57 Aligned_cols=296 Identities=11% Similarity=0.043 Sum_probs=210.9
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCC------HHhHHHHHHHHHhcCCh
Q 045814 81 KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN------PNSLELYIQCLCESGLI 154 (427)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~li~~~~~~~~~ 154 (427)
...++++.|+..|..+... .+.+..++..+...+...|++++|..+++.+-..|+ ...+..+...|.+.|++
T Consensus 46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 3456666666666666542 122344666666666666666666666665321221 13455666666666666
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 045814 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE- 233 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 233 (427)
++|..+|+++.+... .+..++..++..+.+.|+ +++|.+.++.+...+..+.
T Consensus 124 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~--------------------------~~~A~~~~~~~~~~~~~~~~ 176 (389)
T PRK11788 124 DRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKD--------------------------WQKAIDVAERLEKLGGDSLR 176 (389)
T ss_pred HHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhch--------------------------HHHHHHHHHHHHHhcCCcch
Confidence 666666666665422 244555555555555554 5555555555544333221
Q ss_pred ---HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814 234 ---NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310 (427)
Q Consensus 234 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (427)
...+..+...+.+.|++++|.+.++++.+... .+...+..+...|.+.|++++|.++|+++.+.+......+++.+
T Consensus 177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 177 VEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 22456677788899999999999999987642 24567888889999999999999999999876433334678889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---c
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL---H 387 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~ 387 (427)
+.+|.+.|++++|...++++.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999999999886 466667788999999999999999999998876 5888899988888775 5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh
Q 045814 388 GRTDEAYHLFEEMAQKGIFRDVI 410 (427)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~~~ 410 (427)
|+.+++..++++|.++++.|++.
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999988877765
No 10
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=8.2e-20 Score=170.73 Aligned_cols=269 Identities=12% Similarity=0.086 Sum_probs=207.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCC--CHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhc
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSP--DLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCES 151 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~ 151 (427)
+..++...++++.|..+++.+.......+ ....+..+...+.+.|+++.|...|+++ .. ..+..+++.++..+.+.
T Consensus 75 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~ 154 (389)
T PRK11788 75 LGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE 154 (389)
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Confidence 44566788999999999999876432222 2357888899999999999999999984 22 34577899999999999
Q ss_pred CChhHHHHHHHHHHhcCCCcCHh----hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814 152 GLIEEAFCAFSKLKEMGVFGSIK----TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE 227 (427)
Q Consensus 152 ~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (427)
|++++|.+.++.+.+.+..+... .+.. +...+.+.|++++|...++++.+
T Consensus 155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------la~~~~~~~~~~~A~~~~~~al~ 208 (389)
T PRK11788 155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCE--------------------------LAQQALARGDLDAARALLKKALA 208 (389)
T ss_pred chHHHHHHHHHHHHHhcCCcchHHHHHHHHH--------------------------HHHHHHhCCCHHHHHHHHHHHHh
Confidence 99999999999998865443221 1222 23344556666666666666665
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 307 (427)
.... +...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+.. |+...+
T Consensus 209 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~ 285 (389)
T PRK11788 209 ADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLL 285 (389)
T ss_pred HCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHH
Confidence 4322 4567778888999999999999999998876433334678888999999999999999999988763 566667
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHCCCCCChh
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR---IDNLEEAKRLHKEMLDKGYGETTV 375 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~ 375 (427)
..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+.++.|++.
T Consensus 286 ~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 286 LALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 88889999999999999999998876 6888888888877664 458889999999999877776665
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.85 E-value=7.2e-17 Score=158.75 Aligned_cols=321 Identities=12% Similarity=0.033 Sum_probs=258.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcC
Q 045814 75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESG 152 (427)
Q Consensus 75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~ 152 (427)
.+..-+.+.+++..|+.++...... .+-+...+..++......|+++.|...+++ ....| +...+..+...+.+.|
T Consensus 47 ~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 47 LFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence 3344455678999999998888654 233455666666777789999999999998 34455 4667888899999999
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-------hHHHHHhcCChhHHHHHHHHH
Q 045814 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQV 225 (427)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~ 225 (427)
++++|...|++..+.... +...+..+...+...|+.++|...++.+..... .+..+...|++++|...++.+
T Consensus 125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999886433 577888899999999999999999988765421 223477899999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCC
Q 045814 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE----AYRVFNDLKERGYV 301 (427)
Q Consensus 226 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~ 301 (427)
......++...+..+...+...|++++|...++++.+... .+...+..+...|...|++++ |...|++..+....
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 8765444555566667888999999999999999998753 356788889999999999986 89999999887543
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT-VTYNTL 380 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l 380 (427)
+...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...++.+.+.+ |+. ..+..+
T Consensus 283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~ 358 (656)
T PRK15174 283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYA 358 (656)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHH
Confidence 6678899999999999999999999999987422 45667778889999999999999999998763 443 334445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..++...|+.++|...|++..+.
T Consensus 359 a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 67889999999999999998876
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=1.3e-15 Score=150.12 Aligned_cols=342 Identities=12% Similarity=0.013 Sum_probs=248.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChh
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIE 155 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~ 155 (427)
..+...+++..|+..|..+.. ..|+...|..+..+|.+.|++++|++.+++ ....|+ ...|..+..+|...|+++
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~ 211 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA 211 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence 345567899999999999864 568888999999999999999999999987 455554 668899999999999999
Q ss_pred HHHHHHHHHHhcCCC----------------------------c-CHhhHHHH---------------------------
Q 045814 156 EAFCAFSKLKEMGVF----------------------------G-SIKTWNSA--------------------------- 179 (427)
Q Consensus 156 ~A~~~~~~m~~~g~~----------------------------p-~~~~~~~l--------------------------- 179 (427)
+|+.-|......+.. | +...+..+
T Consensus 212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (615)
T TIGR00990 212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG 291 (615)
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence 998766544321100 0 00000000
Q ss_pred ---HHHH------HHcCChhHHHHHHHHHHhcc-----------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045814 180 ---LLGC------IKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239 (427)
Q Consensus 180 ---l~~~------~~~~~~~~a~~~~~~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (427)
+... ...+++++|.+.|+..++.+ .+...+...|++++|+..+++....... ....|..
T Consensus 292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~ 370 (615)
T TIGR00990 292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIK 370 (615)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence 0000 11246778888888887642 2455667789999999999988875432 4567888
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319 (427)
Q Consensus 240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (427)
+...+...|++++|...|++..+... .+..+|..+...+...|++++|...|++..+.... +...+..+...+.+.|+
T Consensus 371 la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~ 448 (615)
T TIGR00990 371 RASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGS 448 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCC
Confidence 88888889999999999998877643 35678888888899999999999999998877533 56677778888888999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCHHHH
Q 045814 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV------TYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 320 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A 393 (427)
+++|+..+++..+.. +-+...++.+...+...|++++|.+.|+...+.....+.. .++..+..+...|++++|
T Consensus 449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA 527 (615)
T TIGR00990 449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA 527 (615)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence 999999999888753 2346778888888899999999999999887653211111 122222334446889999
Q ss_pred HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814 394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427 (427)
Q Consensus 394 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 427 (427)
.+++++...... -+...+..+...+.+.|++++
T Consensus 528 ~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~e 560 (615)
T TIGR00990 528 ENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDE 560 (615)
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 999988877532 234567888888888888653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.81 E-value=2.8e-16 Score=154.63 Aligned_cols=310 Identities=13% Similarity=0.056 Sum_probs=249.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc
Q 045814 109 CNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186 (427)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 186 (427)
...++..+.+.|++++|..+++. ....| +...+..++.+....|++++|.+.|+++.+.... +...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence 33446667889999999999987 33334 4556777778888899999999999999987544 677888899999999
Q ss_pred CChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814 187 DRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258 (427)
Q Consensus 187 ~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 258 (427)
|+.++|...++++.... .+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998852 3677899999999999999988766544 33334333 34788999999999999
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH----HHHHHHHHHHcC
Q 045814 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD----ARKMWFEMIHKG 334 (427)
Q Consensus 259 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~ 334 (427)
.+.+....++...+..+...+.+.|++++|...++++.+.... +...+..+...+...|++++ |...++++.+..
T Consensus 202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~ 280 (656)
T PRK15174 202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN 280 (656)
T ss_pred HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence 9887754445555666678899999999999999999887543 67788889999999999986 899999999864
Q ss_pred CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HH
Q 045814 335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT-YN 413 (427)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~ 413 (427)
. .+...+..+...+...|++++|...+++..+... .+...+..+..+|...|++++|...|+++... .|+... +.
T Consensus 281 P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~ 356 (656)
T PRK15174 281 S-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR 356 (656)
T ss_pred C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence 2 3567888999999999999999999999998642 25667888899999999999999999999875 455433 33
Q ss_pred HHHHHHHhcCCCC
Q 045814 414 TLIQGYCKEGKIV 426 (427)
Q Consensus 414 ~li~~~~~~g~~~ 426 (427)
.+..++...|+.+
T Consensus 357 ~~a~al~~~G~~d 369 (656)
T PRK15174 357 YAAAALLQAGKTS 369 (656)
T ss_pred HHHHHHHHCCCHH
Confidence 4566788888765
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=6.5e-15 Score=154.64 Aligned_cols=339 Identities=13% Similarity=0.037 Sum_probs=214.5
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHH------------HHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHH
Q 045814 77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN------------VLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLE 142 (427)
Q Consensus 77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~ 142 (427)
..++...++.+.|+..|+.+.+...-.++...+. .....+.+.|++++|...+++ ....| +...+.
T Consensus 310 g~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~ 389 (1157)
T PRK11447 310 GQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL 389 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 3455566777777777777654321111111111 123345567777777777776 23333 345666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----------------chh
Q 045814 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----------------GYL 205 (427)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------~~l 205 (427)
.+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+... ..+
T Consensus 390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~ 467 (1157)
T PRK11447 390 GLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ 467 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence 6777777777777777777777765322 3444555555543 34556666555443211 013
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHH---------
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI--------- 276 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--------- 276 (427)
...+...|++++|.+.+++.....+. +...+..+...|.+.|++++|...++++.+.... +...+..+.
T Consensus 468 a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 468 AEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCH
Confidence 34556678888888888887775543 5566777777888888888888888877765322 222222222
Q ss_pred -----------------------------------HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814 277 -----------------------------------NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321 (427)
Q Consensus 277 -----------------------------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (427)
..+...|+.++|..+++. ...+...+..+...+.+.|+.+
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHH
Confidence 233344444555444441 1234456677888888999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+|+..|++..+.. +.+...+..+...|...|++++|.+.++...+.. +.+...+..+..++...|++++|.++++++.
T Consensus 621 ~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al 698 (1157)
T PRK11447 621 AARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLI 698 (1157)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 9999999998874 2357788888999999999999999999887642 2245667777888889999999999999988
Q ss_pred HCCCC--C---CHhHHHHHHHHHHhcCCCC
Q 045814 402 QKGIF--R---DVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 402 ~~g~~--p---~~~~~~~li~~~~~~g~~~ 426 (427)
..... | +...+..+...+...|+.+
T Consensus 699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 699 PQAKSQPPSMESALVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred hhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence 75322 2 2235555566666666653
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=4.1e-16 Score=141.53 Aligned_cols=321 Identities=13% Similarity=0.081 Sum_probs=234.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCC-CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH---------------
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSP-DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP--------------- 138 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~--------------- 138 (427)
+..+++.+++...|+..++.+.+ .+| .+..|..+..++...|+.+.|...|.+ ..+.|+.
T Consensus 122 ~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~G 198 (966)
T KOG4626|consen 122 LANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEG 198 (966)
T ss_pred HHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhc
Confidence 44667777888888888887764 345 366777777788888877777776654 3334432
Q ss_pred --------------------HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 045814 139 --------------------NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198 (427)
Q Consensus 139 --------------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 198 (427)
..|+.|...+-..|+...|++-|++..+.... -...|-.|...|...+.+++|...|.+
T Consensus 199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 23445555555566666666666666553222 244566677777777777777777766
Q ss_pred HHhc--------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814 199 LIES--------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270 (427)
Q Consensus 199 ~~~~--------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 270 (427)
.... |-+...|...|.++.|+..+++.++..+. -...|+.|..++-..|++.+|.+.+.+...... .-..
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~had 355 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHAD 355 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHH
Confidence 5543 33666777888888888888888875433 456888888888888999999999888877642 2356
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGY 349 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~ 349 (427)
..+.|.+.|...|++++|..+|....+-... -...++.|...|-+.|++++|+.-|++..+- .|+ ...|+.+...|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHH
Confidence 7788888899999999999999888775322 3457888888899999999999999888774 565 56788888889
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (427)
-..|+++.|.+.+.+.+.. .|. ....+.|...|-.+|++.+|+.-|++..+ ++||.
T Consensus 433 ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf 489 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF 489 (966)
T ss_pred HHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence 9999999999998888764 344 46778888899999999999999998887 46664
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=1.6e-15 Score=137.69 Aligned_cols=296 Identities=13% Similarity=0.095 Sum_probs=238.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCC-HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCC
Q 045814 77 REFLKQQNNVLLSIRFFQWLHSHYGFSPD-LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGL 153 (427)
Q Consensus 77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~ 153 (427)
..+++..+....|-..+..+.+ ..|. ...|+.|...+-.+|+...|+.-|++ ..+.|+ ...|-.|...|...+.
T Consensus 191 gnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~ 267 (966)
T KOG4626|consen 191 GNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI 267 (966)
T ss_pred hHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence 3444555555555555444432 2333 34677777777788888888888887 566776 6789999999999999
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHH
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQV 225 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~ 225 (427)
+++|...|.+....... .+..+..+...|...|..+.|+..|++.++.. -+..++-..|++.+|++.+.+.
T Consensus 268 ~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 268 FDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred chHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 99999999988875333 57788888899999999999999999998873 4888888999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-h
Q 045814 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-T 304 (427)
Q Consensus 226 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~ 304 (427)
...... -..+.+.|...|...|.++.|..+|....+-... -...++.|...|-+.|++++|...|++.... .|+ .
T Consensus 347 L~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA 422 (966)
T KOG4626|consen 347 LRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA 422 (966)
T ss_pred HHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence 886543 5668889999999999999999999988776322 3468899999999999999999999998875 565 4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIA 382 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~ 382 (427)
..|+.+...|-..|+.+.|.+.+.+.+.. .|. ...++.|...|-..|++.+|.+-++...+. +|| +..|..++.
T Consensus 423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh 498 (966)
T KOG4626|consen 423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLH 498 (966)
T ss_pred HHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHH
Confidence 58999999999999999999999999886 444 567899999999999999999999999875 555 445655655
Q ss_pred HH
Q 045814 383 GL 384 (427)
Q Consensus 383 ~~ 384 (427)
++
T Consensus 499 ~l 500 (966)
T KOG4626|consen 499 CL 500 (966)
T ss_pred HH
Confidence 54
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=1.2e-14 Score=143.38 Aligned_cols=291 Identities=13% Similarity=0.024 Sum_probs=237.3
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 186 (427)
.+......+.+.|+++.|+..|++ ....|+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence 344567778899999999999998 677889899999999999999999999999999987543 677899999999999
Q ss_pred CChhHHHHHHHHHHhcc-------------------------------------hhHH----------------------
Q 045814 187 DRTDLVWKLYHDLIESG-------------------------------------YLIQ---------------------- 207 (427)
Q Consensus 187 ~~~~~a~~~~~~~~~~~-------------------------------------~l~~---------------------- 207 (427)
|++++|..-|..+.... ..+.
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 99999986554332110 0000
Q ss_pred -----HH----------HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814 208 -----AF----------CNDGKVSEGYELLRQVLEDG-LVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270 (427)
Q Consensus 208 -----~~----------~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 270 (427)
++ ...+++++|.+.|+.....+ ..| ....++.+...+...|++++|...+++..+... -+..
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence 00 11256889999999988764 223 456788888888999999999999999988742 2356
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
.|..+...+...|++++|...|+++.+.... +...|..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence 7888889999999999999999999887543 57789999999999999999999999999874 235667788888999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+.|++++|...+++..+. .+.+...|+.+...+...|++++|.+.|++....
T Consensus 445 ~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 999999999999999875 3336788999999999999999999999998875
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.75 E-value=1.9e-14 Score=151.24 Aligned_cols=339 Identities=9% Similarity=0.005 Sum_probs=237.9
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH---HhHH------------
Q 045814 79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP---NSLE------------ 142 (427)
Q Consensus 79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~---~~~~------------ 142 (427)
.+...++++.|+..|+.+... .+.+...+..+..++.+.|++++|...|++ ....|+. ..|.
T Consensus 278 ~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 278 AAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 344568888999999888653 233678888888999999999999999887 3333432 1121
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCC
Q 045814 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGK 214 (427)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~ 214 (427)
.+...+.+.|++++|...|+++.+.... +...+..+...+...|++++|++.|+++++... +...| ..++
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~-~~~~ 433 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQS 433 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcC
Confidence 2244667889999999999999887543 567777888899999999999999998886531 33344 3467
Q ss_pred hhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH
Q 045814 215 VSEGYELLRQVLEDGLV--------PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286 (427)
Q Consensus 215 ~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 286 (427)
.++|..+++.+...... .....+..+...+...|++++|.+.+++..+..+. +...+..+...|.+.|+++
T Consensus 434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~ 512 (1157)
T PRK11447 434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS 512 (1157)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 78888887765432110 01224556677888899999999999999887533 5667788899999999999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------------------------------
Q 045814 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK--------------------------------- 333 (427)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------------------- 333 (427)
+|...++++.+.... +...+..+...+...++.++|...++.+...
T Consensus 513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e 591 (1157)
T PRK11447 513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE 591 (1157)
T ss_pred HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence 999999999875332 3333333333344445555554444432111
Q ss_pred ------CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814 334 ------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407 (427)
Q Consensus 334 ------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (427)
..+.+...+..+...+.+.|++++|...|+...+.. +.+...+..+...|...|++++|.+.++...+. .|
T Consensus 592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p 668 (1157)
T PRK11447 592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN 668 (1157)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence 112344556677778888899999999999888763 336778888889999999999999999987764 33
Q ss_pred -CHhHHHHHHHHHHhcCCCC
Q 045814 408 -DVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 408 -~~~~~~~li~~~~~~g~~~ 426 (427)
+..++..+..++...|+++
T Consensus 669 ~~~~~~~~la~~~~~~g~~~ 688 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTA 688 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHH
Confidence 3455666777777777764
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.73 E-value=1.7e-13 Score=137.87 Aligned_cols=343 Identities=10% Similarity=-0.025 Sum_probs=208.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcC
Q 045814 75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESG 152 (427)
Q Consensus 75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~ 152 (427)
.+...+...+++..|.++++.+... -+.+...+..+...+.+.|++++|...+++. ...| +.. +..+..++...|
T Consensus 54 ~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 54 AVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 3445677889999999999998654 2345677788888999999999999999883 3344 455 888889999999
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc------------chhHHHHH-----hcCCh
Q 045814 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------------GYLIQAFC-----NDGKV 215 (427)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~~l~~~~~-----~~g~~ 215 (427)
+.++|+..++++.+.... +...+..+..++...+..+.|...++.+... ...+.... ..+++
T Consensus 131 ~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~ 209 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY 209 (765)
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence 999999999999987554 5666667777888888888788777654431 01111111 11222
Q ss_pred ---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHccCChhHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCh
Q 045814 216 ---SEGYELLRQVLED-GLVPENT-AF----NKLISRFCEKKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 216 ---~~a~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~ 285 (427)
++|++.++.+... ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|++
T Consensus 210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~ 288 (765)
T PRK10049 210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP 288 (765)
T ss_pred HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence 5566666666543 1122211 11 11122334556677777777776665421 221 112235566667777
Q ss_pred HHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL-----------LPNE---YTYNSMIHG 348 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~ 348 (427)
++|+.+|+++.+..... ....+..+..++.+.|++++|..+++.+..... .|+. ..+..+...
T Consensus 289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~ 368 (765)
T PRK10049 289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV 368 (765)
T ss_pred HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence 77777777665442111 012344455566667777777777776665421 1221 233445556
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCC
Q 045814 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKI 425 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 425 (427)
+...|++++|+++++++.... +-+...+..+...+...|++++|++.+++.... .|+ ...+......+...|++
T Consensus 369 l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 369 AKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCH
Confidence 666677777777777766542 234566666666666777777777777766654 343 34444444455555544
No 20
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=9.3e-12 Score=123.57 Aligned_cols=341 Identities=9% Similarity=-0.017 Sum_probs=215.9
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHH
Q 045814 79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A 157 (427)
++...+++..|+++++.+.+. .+-++..+..++..+.+.++.++|++.+++ ....|+...+-.++..+...++..+|
T Consensus 111 ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 555668888888888888654 233456666777788888888888888887 34556655564454555455666668
Q ss_pred HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------h---hHHHH-----HhcCC---h
Q 045814 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------Y---LIQAF-----CNDGK---V 215 (427)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~---l~~~~-----~~~g~---~ 215 (427)
++.++++.+.... +...+..+..++.+.|-...|.++.++-...- . .++.- ....+ .
T Consensus 189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~ 267 (822)
T PRK14574 189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA 267 (822)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 8888888877533 56677777788888888777777765443220 0 11000 01111 3
Q ss_pred hHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814 216 SEGYELLRQVLED-GLVPEN-----TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289 (427)
Q Consensus 216 ~~a~~~~~~~~~~-~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 289 (427)
+.|+.-++.+... +..|.. ...--.+-++...|+..++++.|+.+...+.+....+-..+.++|...+.+++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3445555554431 222321 1222344566777788888888888887775544556777788888888888888
Q ss_pred HHHHHHHhCC-----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-------------CCCCH-HHHHHHHHHHh
Q 045814 290 RVFNDLKERG-----YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-------------LLPNE-YTYNSMIHGYC 350 (427)
Q Consensus 290 ~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~ 350 (427)
.+|..+.... ..++......|..+|...+++++|..+++++.+.. ..||- ..+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 8888775532 12233345677778888888888888888877631 11221 23344566677
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCC
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKI 425 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 425 (427)
..|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++..... .|+ ..+......++...|++
T Consensus 428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~ 500 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEW 500 (822)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhH
Confidence 7788888888888887653 337777777778888888888888888666554 343 44555555555555544
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.66 E-value=2.3e-12 Score=129.73 Aligned_cols=332 Identities=11% Similarity=-0.046 Sum_probs=243.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCC
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGL 153 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~ 153 (427)
+..++...++...|+..++.+... .+.+.. +..+..++...|++++|...+++ ....|+ ...+..+..++...+.
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 334566789999999999998765 334556 88888999999999999999998 444554 5566778888889999
Q ss_pred hhHHHHHHHHHHhcCCCcCH------hhHHHHHHHHH-----HcCCh---hHHHHHHHHHHhc---c-----h-------
Q 045814 154 IEEAFCAFSKLKEMGVFGSI------KTWNSALLGCI-----KIDRT---DLVWKLYHDLIES---G-----Y------- 204 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~---~-----~------- 204 (427)
.+.|++.++.... .|+. .....++.... ..+++ ++|+..++.+.+. + .
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999987654 2221 11222222222 12223 6788888888743 1 0
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC---CHhhHHHHHHHHH
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP---DNFTYEEVINGLC 280 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~ 280 (427)
.+..+...|++++|+..|+.+...+.. |+. .-..+...|...|++++|+..|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456789999999999999987642 332 22225678999999999999999987654221 1245666777889
Q ss_pred hcCChHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814 281 KSRKRLEAYRVFNDLKERGY-----------VPD---TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346 (427)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 346 (427)
..|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+..++++.... +-+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 99999999999999987531 123 2245667788889999999999999998873 33577888899
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 418 (427)
..+...|++++|++.+++..+.. +-+...+-.+...+...|++++|..+++++.+. .|+......+=..
T Consensus 401 ~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 401 SVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 99999999999999999998863 224667777778899999999999999999985 5655544444333
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.66 E-value=4.8e-12 Score=125.57 Aligned_cols=338 Identities=8% Similarity=0.042 Sum_probs=242.5
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHhcCCCCC-HHhHHHH--HHHHHhcCCh
Q 045814 80 LKQQNNVLLSIRFFQWLHSHYGFSPDL--VSCNVLFDSLVEARAFKVAMDFLDSTGFSPN-PNSLELY--IQCLCESGLI 154 (427)
Q Consensus 80 l~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l--i~~~~~~~~~ 154 (427)
..+.+++..|+..|+.+.+. .|+. ..+ .++..+...|+.++|+..+++.- .|+ ...+..+ ...|...|++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdy 118 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRW 118 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCH
Confidence 44778899999999888653 4543 233 78888888899999999998865 443 2333333 5578888999
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-----hHHHHH--hcCChhHHHHHHHHHHH
Q 045814 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFC--NDGKVSEGYELLRQVLE 227 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----l~~~~~--~~g~~~~a~~~~~~~~~ 227 (427)
++|+++|+++.+.... +...+..++..+...++.++|++.++.+..... +..++. ..++..+|++.++++.+
T Consensus 119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999999999887655 567777888888999999999999988877632 233333 35556568999999888
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHH------------------------------------------------HH
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELL------------------------------------------------HT 259 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~------------------------------------------------~~ 259 (427)
..+. +...+..+..++.+.|-...|.++. +.
T Consensus 198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 7543 5555565655555555443333332 22
Q ss_pred HhhC-CCCCCH-h----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 260 MVAR-NRAPDN-F----TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 260 m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
+... +..|.. . ..--.+-++.+.|++.++++.|+.+...|.+....+-..+.++|...+++++|+.+|+.+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 2221 122322 1 222345677889999999999999998886545557788999999999999999999999765
Q ss_pred C-----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-------------CCCCh-hhHHHHHHHHHhcCCHHHHH
Q 045814 334 G-----LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-------------YGETT-VTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 334 ~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~~~g~~~~A~ 394 (427)
. ..++......|.-+|...+++++|..+++.+.+.- ..||- ..+..++..+...|+..+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 3 12344446788999999999999999999998731 11222 34455677889999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 395 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+.++++...... |......+.+.+...|..
T Consensus 437 ~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 437 KKLEDLSSTAPA-NQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 999999876433 777888887777776654
No 23
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.5e-12 Score=113.71 Aligned_cols=308 Identities=13% Similarity=0.170 Sum_probs=195.1
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH
Q 045814 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179 (427)
Q Consensus 103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 179 (427)
+.+..+|..+|.++++-...+.|.+++++. ..+.+..+||.+|.+-.- ....++..+|....+.||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence 457789999999999999999999999874 446788999999876432 2237889999999999999999999
Q ss_pred HHHHHHcCChhHHH----HHHHHHHhcch---------hHHHHHhcCChhH-HHHHHHHHHH----CCCCC----CHHHH
Q 045814 180 LLGCIKIDRTDLVW----KLYHDLIESGY---------LIQAFCNDGKVSE-GYELLRQVLE----DGLVP----ENTAF 237 (427)
Q Consensus 180 l~~~~~~~~~~~a~----~~~~~~~~~~~---------l~~~~~~~g~~~~-a~~~~~~~~~----~~~~~----~~~~~ 237 (427)
+.+..+.|+++.|. +++.+|.+.|+ ++..+++.++..+ +..++.++.. ..++| |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 99999999887654 44455555442 5556666655533 3333333322 12222 34455
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhCC----CCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814 238 NKLISRFCEKKNFGRVSELLHTMVARN----RAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310 (427)
Q Consensus 238 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (427)
...++.|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 666666666666666666655443321 1222 123455666666777777777777777666566677777777
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-CH--------HH-----HHHHH-------HHHHHCC
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-NL--------EE-----AKRLH-------KEMLDKG 369 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----a~~~~-------~~m~~~~ 369 (427)
+++..-.|+++-.-++|.+++..|...+...-.-++.-+++.. +. .. |..++ .+|.+
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 7777777788888888888877765544444444444444333 11 00 11111 12222
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHH
Q 045814 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI-FRDVITYNTLI 416 (427)
Q Consensus 370 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li 416 (427)
........+.+.-.+.+.|+.++|.++|.-+.++|- .|-....++++
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 223444556666677788888888888888855532 33334444443
No 24
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.60 E-value=5.4e-12 Score=117.96 Aligned_cols=280 Identities=10% Similarity=-0.024 Sum_probs=186.2
Q ss_pred HcCChHHHHHHHHhc-CCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHH
Q 045814 118 EARAFKVAMDFLDST-GFSPNPNS-LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195 (427)
Q Consensus 118 ~~~~~~~a~~~~~~~-~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 195 (427)
..|+++.|.+.+.+. ...|++.. +-....+..+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 457777777777652 33444332 3333556666777777777777766543222222333346666677777777777
Q ss_pred HHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HccCChhHHHHHHHHHhhC
Q 045814 196 YHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN-KLISRF---CEKKNFGRVSELLHTMVAR 263 (427)
Q Consensus 196 ~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~m~~~ 263 (427)
++.+.+.+ .+...+...|++++|.+.+..+.+.+.. +...+. .-..++ ...+..+++.+.+..+.+.
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~ 254 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN 254 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 77777663 3667777888888888888888877654 333232 111111 2223333334455555444
Q ss_pred CC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 045814 264 NR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM---YTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337 (427)
Q Consensus 264 ~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 337 (427)
.. +.+...+..+...+...|+.++|.+++++..+.. ||... ...........++.+.+.+.+++..+. .|
T Consensus 255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p 330 (409)
T TIGR00540 255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD 330 (409)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence 22 1377888889999999999999999999998864 34332 122222334457788899999888776 33
Q ss_pred C-H--HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 338 N-E--YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 338 ~-~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+ . ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3 3 556688889999999999999999644444568998899999999999999999999998644
No 25
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.60 E-value=6.4e-12 Score=116.83 Aligned_cols=274 Identities=11% Similarity=0.044 Sum_probs=195.6
Q ss_pred cCChHHHHHHHHhcCCC-CCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHH--HHHHHHHHcCChhHHHH
Q 045814 119 ARAFKVAMDFLDSTGFS-PNPNS-LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN--SALLGCIKIDRTDLVWK 194 (427)
Q Consensus 119 ~~~~~~a~~~~~~~~~~-~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~ 194 (427)
.|+++.|.+.+.+.... +++.. |-....+..+.|+++.|.+.|.++.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777763222 22232 222234446778888888888887664 34433322 33557777888888888
Q ss_pred HHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChhHHHHHHHH
Q 045814 195 LYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-------TAFNKLISRFCEKKNFGRVSELLHT 259 (427)
Q Consensus 195 ~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~ 259 (427)
.++.+.+.+ .+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 887777663 3677788888888888888888876655322 1333444444445556666667666
Q ss_pred HhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 045814 260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339 (427)
Q Consensus 260 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 339 (427)
+.+. .+.+......+...+...|+.++|.+++++..+. .|+.. -.++.+....++.+++.+..+...+.. +-|.
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence 5443 2446778888999999999999999999998875 34442 223445556699999999999988773 2356
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..+..+...|.+.|++++|.+.|+...+. .|+...|..+...+.+.|+.++|.+++++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66788889999999999999999999875 68999999999999999999999999987754
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=6.6e-11 Score=119.99 Aligned_cols=313 Identities=10% Similarity=-0.024 Sum_probs=208.3
Q ss_pred HHhcCChHHHHHHHHHHhh-cCCCCCCHhhHHHHHHHHHHcCC---hHHHHHHHH-------------------------
Q 045814 80 LKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARA---FKVAMDFLD------------------------- 130 (427)
Q Consensus 80 l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~------------------------- 130 (427)
+-..++...|.++++.... +..-.++....+.++..|.+.+. ..++..+..
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV 465 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence 3356788889899888855 33344566667788888888766 333333311
Q ss_pred h-cCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---
Q 045814 131 S-TGF-SP--NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--- 203 (427)
Q Consensus 131 ~-~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 203 (427)
. .+. ++ +...|..+..++.. +++++|...|.+.... .|+......+...+...|++++|...|+.+....
T Consensus 466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~ 542 (987)
T PRK09782 466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN 542 (987)
T ss_pred HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence 1 122 23 45677777777766 7888888877777654 3555444344455567888888888888766531
Q ss_pred ----hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 045814 204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL 279 (427)
Q Consensus 204 ----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 279 (427)
.+...+.+.|+.++|...+++....... +...+..+.....+.|++++|...+++..+.. |+...+..+...+
T Consensus 543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l 619 (987)
T PRK09782 543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIY 619 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 2445667788888888888888765422 22333333334445588888888888887663 4566777888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 359 (427)
.+.|++++|+..|++..+.... +...++.+..++...|+.++|+..+++..+... -+...+..+..++...|++++|+
T Consensus 620 ~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 620 RQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 8888888888888888777543 556777777788888888888888888877632 24567777888888888888888
Q ss_pred HHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 360 RLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 360 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..+++..+.. |+ ..+.-.......+..+++.|.+-+++.-.
T Consensus 698 ~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 698 HYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred HHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 8888887653 33 24444445555555666666665555443
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4.8e-12 Score=106.86 Aligned_cols=283 Identities=10% Similarity=0.071 Sum_probs=197.9
Q ss_pred cCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC---HhhHHHHHHHHHHcCChhHHH
Q 045814 119 ARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVW 193 (427)
Q Consensus 119 ~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~ 193 (427)
+++.++|.++|-++ ...| +.++.-+|...|.+.|..+.|+++.+.+.+.--.+. ....-.|..-|...|-+|.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 56788888888774 3233 345667788889999999999999988886421111 123445666788888899999
Q ss_pred HHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHh
Q 045814 194 KLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN----TAFNKLISRFCEKKNFGRVSELLHTMV 261 (427)
Q Consensus 194 ~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~ 261 (427)
.+|..+.+.+ .|+..|-...+|++|+++-+++...+..+.. .-|.-|...+....+.++|..++.+..
T Consensus 128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 9998888753 3788888888999999988888877655432 234455555556778888888888888
Q ss_pred hCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 045814 262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341 (427)
Q Consensus 262 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 341 (427)
+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+....+ ..
T Consensus 208 qa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~ 284 (389)
T COG2956 208 QADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DA 284 (389)
T ss_pred hhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cH
Confidence 77533 4445556667888889999999999988887554445577788888889999999888888888764333 33
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCC
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL---HGRTDEAYHLFEEMAQKGIF 406 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~ 406 (427)
-..+-..-....-.+.|..++.+-... +|+...+..+|..-.. .|...+-+.++++|...-++
T Consensus 285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 344444334444555666555544443 4888888888876543 35567777778888765443
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.59 E-value=9.5e-12 Score=108.89 Aligned_cols=309 Identities=13% Similarity=0.190 Sum_probs=214.3
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHH--cCChHH-HHHHHHhc---C-------------------CCCC
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE--ARAFKV-AMDFLDST---G-------------------FSPN 137 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~-a~~~~~~~---~-------------------~~~~ 137 (427)
.+....+.-+++.|+ +.|+..+...--.|++..+- +.++.- -++.|-.+ | .+.+
T Consensus 128 ~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT 206 (625)
T KOG4422|consen 128 SREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT 206 (625)
T ss_pred hcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence 456677777888884 34666666655555544332 222211 12222111 1 1223
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~ 217 (427)
..++..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-. +..
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S------------------------------~~~ 256 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS------------------------------YSV 256 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH------------------------------hhc
Confidence 44555666666666556666666665555555555555555554322 222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh----HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH-HHHHH
Q 045814 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG----RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVF 292 (427)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~ 292 (427)
..+++.+|......||..|+|+++++..+.|+++ .|.+++.+|++-|++|...+|..+|..+++.+++.+ |..++
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 3677888999999999999999999999999866 467788999999999999999999999999998855 44444
Q ss_pred HHHH----hCCCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhhcCCHHH
Q 045814 293 NDLK----ERGYVP----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLPN---EYTYNSMIHGYCRIDNLEE 357 (427)
Q Consensus 293 ~~m~----~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~ 357 (427)
.++. .+.++| |...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443 333333 45567888889999999999998876655331 2233 2245677788888889999
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 045814 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422 (427)
Q Consensus 358 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 422 (427)
-...|+.|.-.-+.|+..+...++++....|.++-.-+++.++...|...+...-..++.-+|+.
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~ 481 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD 481 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence 99999999988888999999999999999999999999999999888665555555555555543
No 29
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.57 E-value=1.9e-14 Score=127.77 Aligned_cols=259 Identities=15% Similarity=0.168 Sum_probs=106.4
Q ss_pred HHHHHHHHcCChHHHHHHHHh-c-CC-CC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc
Q 045814 111 VLFDSLVEARAFKVAMDFLDS-T-GF-SP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186 (427)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~-~-~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 186 (427)
.+...+.+.|++++|++++++ . .. .| +...|..+.......++++.|.+.|+++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 457777788888888888854 2 22 23 3445566666777788888888888888776544 44455555444 344
Q ss_pred CChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC-C
Q 045814 187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN-R 265 (427)
Q Consensus 187 ~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~ 265 (427)
+ ++++|.+++....+.. ++...+..++..+.+.++++++.++++.+.... .
T Consensus 91 ~--------------------------~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~ 142 (280)
T PF13429_consen 91 G--------------------------DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA 142 (280)
T ss_dssp -------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--
T ss_pred c--------------------------cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC
Confidence 4 4445555444443322 355567778888888899999999988876543 2
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345 (427)
Q Consensus 266 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 345 (427)
+.+...|..+...+.+.|+.++|.+.+++..+..+. |....+.++..+...|+.+++..+++...+.. +.|...+..+
T Consensus 143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l 220 (280)
T PF13429_consen 143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDAL 220 (280)
T ss_dssp -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence 456677888888888999999999999998887433 56778888888888999988888888877764 3455677888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..+|...|+.++|..++++..+.. +.|+.....+..++...|+.++|.++.++..+
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 888899999999999999988753 33788888888999999999999988876643
No 30
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=9.7e-11 Score=103.68 Aligned_cols=270 Identities=14% Similarity=0.067 Sum_probs=188.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------------------
Q 045814 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG----------------------- 203 (427)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----------------------- 203 (427)
++......+++.+-.+.....|..-+...-+....+.-...+++.|+.+|+++.+..
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL 315 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL 315 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence 344444555555555555555555444444444444445556666666666665541
Q ss_pred -------------------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814 204 -------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264 (427)
Q Consensus 204 -------------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 264 (427)
++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-+...++-+
T Consensus 316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~ 394 (559)
T KOG1155|consen 316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN 394 (559)
T ss_pred HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence 2566677778888888899888887655 56778888888888888888888888888775
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045814 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344 (427)
Q Consensus 265 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 344 (427)
+.|-..|-.|.++|.-.+.+.-|+-.|++..+.... |...|.+|..+|.+.++.++|++-|......|-. +...+..
T Consensus 395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~ 471 (559)
T KOG1155|consen 395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVR 471 (559)
T ss_pred -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHH
Confidence 347788888888888888888888888888876443 7788888999999999999999998888887643 5678888
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLDK----GYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 418 (427)
+.+.|-+.++.++|.+.|+..++. |..-+ ....--|..-+.+.+++++|..+......- .+...--..|++.
T Consensus 472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlRe 549 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLRE 549 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 888888888888888888776652 33222 122222445667788888887766665542 5555566666666
Q ss_pred HHhc
Q 045814 419 YCKE 422 (427)
Q Consensus 419 ~~~~ 422 (427)
+.+.
T Consensus 550 ir~~ 553 (559)
T KOG1155|consen 550 IRKI 553 (559)
T ss_pred HHHh
Confidence 5543
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.57 E-value=5.5e-11 Score=113.28 Aligned_cols=343 Identities=12% Similarity=0.061 Sum_probs=262.6
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCC-CCCHHhHHHHHHHHHhcCChhH
Q 045814 79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGF-SPNPNSLELYIQCLCESGLIEE 156 (427)
Q Consensus 79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~ 156 (427)
.+-.+++.+.|.+++..+.++ .+.+...|..|..+|-..|+.+++...+-. ... +.|...|..+.....+.|+++.
T Consensus 148 ~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 148 NLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 344579999999999999886 456788999999999999999999876543 222 3466899999999999999999
Q ss_pred HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-------------hHHHHHhcCChhHHHHHHH
Q 045814 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------LIQAFCNDGKVSEGYELLR 223 (427)
Q Consensus 157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------l~~~~~~~g~~~~a~~~~~ 223 (427)
|.-+|.+..+.... +...+--=...|-+.|+...|...|.++..... .+..+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999987544 555555567789999999999999999987642 5677778888899999988
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC---------------------------CCHhhHHHH
Q 045814 224 QVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA---------------------------PDNFTYEEV 275 (427)
Q Consensus 224 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~l 275 (427)
..... +-..+...++.++..+.+...++.|......+.....+ ++..+ -.+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 87762 22346678899999999999999999988887762111 12222 112
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERG--YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
+-++......+....+...+.+.. +.-+...|.-+..+|...|++.+|+.++..+......-+...|-.+..+|-..|
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~ 463 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG 463 (895)
T ss_pred hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence 223334444444555555555554 333566888899999999999999999999998766667788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA--------QKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
..++|.+.|+..+... +-+...--+|-..+-+.|+.++|.+.+..|. ..+..|+........+.+...|+.
T Consensus 464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~ 542 (895)
T KOG2076|consen 464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR 542 (895)
T ss_pred hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence 9999999999999862 1234444556677889999999999999954 335667777777777777777775
Q ss_pred C
Q 045814 426 V 426 (427)
Q Consensus 426 ~ 426 (427)
+
T Consensus 543 E 543 (895)
T KOG2076|consen 543 E 543 (895)
T ss_pred H
Confidence 4
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.54 E-value=4.4e-11 Score=111.28 Aligned_cols=273 Identities=11% Similarity=0.062 Sum_probs=210.2
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHH-HHHHHHcCChHHHHHHHHhc-CCCCCHHhHH--HHHHHHHhcCChhHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVL-FDSLVEARAFKVAMDFLDST-GFSPNPNSLE--LYIQCLCESGLIEEAF 158 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~--~li~~~~~~~~~~~A~ 158 (427)
.+++..|.+........ .+++..+-.+ ..+..+.|+++.|.+.+.++ ...|+..... .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 58999999887766433 2233333333 45558999999999999884 4456654333 3467889999999999
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh----------------HHHHHhcCChhHHHHHH
Q 045814 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------------IQAFCNDGKVSEGYELL 222 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l----------------~~~~~~~g~~~~a~~~~ 222 (427)
+.++++.+.... +......+...|.+.|++++|.+++..+.+.+.+ +.......+.+...+++
T Consensus 174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 999999988655 7888999999999999999999999999976432 11112233344555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 045814 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 302 (427)
+.+.+. ...++.....+...+...|+.++|.+++++..+. .+|.. -.++.+....++.+++.+..+...+....
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~- 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD- 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence 554332 2347778889999999999999999999998875 34442 22344555669999999999999887543
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
|...+..+...|.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++-..
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6667889999999999999999999999986 68999999999999999999999999998754
No 33
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=8.6e-14 Score=123.61 Aligned_cols=260 Identities=15% Similarity=0.088 Sum_probs=102.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCC
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGL 153 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~ 153 (427)
+..++-..++++.|+++++....+.--..|...|..+.......++++.|...++++ ...+ ++..+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 345566789999999999654333111334555666666777889999999999984 2222 45567777777 78999
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC-CCCC
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED-GLVP 232 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~ 232 (427)
+++|.+++....+.. ++...+..++..+...++++++..++ +.+... ....
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l--------------------------~~~~~~~~~~~ 144 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELL--------------------------EKLEELPAAPD 144 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHH--------------------------HHHHH-T---T
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHH--------------------------HHHHhccCCCC
Confidence 999999998776543 45556666666666655555555544 443332 2345
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
+...|..+...+.+.|+.++|.+.+++..+..+. |......++..+...|+.+++..++....+.. ..|...+..+..
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~ 222 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAA 222 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 7778888889999999999999999999887432 56778888999999999999888888887664 336667888999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+|...|+.++|..++++..+.. +.|......+..++...|+.++|.++..+..+
T Consensus 223 ~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 223 AYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred Hhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 9999999999999999988863 33777888889999999999999998887654
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=5.3e-10 Score=113.56 Aligned_cols=310 Identities=9% Similarity=-0.031 Sum_probs=228.4
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCC----CCHHhHHHHHHHHHhcCC---hh
Q 045814 84 NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFS----PNPNSLELYIQCLCESGL---IE 155 (427)
Q Consensus 84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~----~~~~~~~~li~~~~~~~~---~~ 155 (427)
+....+.+.+..+.++ .+-+....-.+.-...+.|+.++|..+++.. ... ++.....-++..|.+.+. ..
T Consensus 356 ~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4555555555555443 1225566666666678999999999999873 222 233344467777777665 22
Q ss_pred HHHHH----------------------HHHHHhc-CC-Cc--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-----
Q 045814 156 EAFCA----------------------FSKLKEM-GV-FG--SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----- 204 (427)
Q Consensus 156 ~A~~~----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----- 204 (427)
++..+ +...... +. ++ +...|..+..++.. ++.++|...+.+......
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~ 512 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQH 512 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHH
Confidence 22222 2222211 12 23 56778888888876 888899998877766521
Q ss_pred --hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 045814 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS 282 (427)
Q Consensus 205 --l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 282 (427)
+...+...|++++|...++++... .|+...+..+...+.+.|+.++|...+++..+... .+...+..+.....+.
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC
Confidence 344556899999999999998654 33445566777888999999999999999988752 2333343444455566
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362 (427)
Q Consensus 283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 362 (427)
|++++|...+++..+.. |+...|..+..++.+.|+.++|+..+++...... .+...++.+..++...|+.++|...+
T Consensus 590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998774 5778899999999999999999999999998742 25667888888999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 363 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+...+... -+...+..+..++...|++++|...|++..+.
T Consensus 667 ~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 667 ERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99998632 36788999999999999999999999999875
No 35
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.52 E-value=9.4e-11 Score=109.65 Aligned_cols=282 Identities=10% Similarity=0.022 Sum_probs=209.1
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCCHhh-HHHHHHHHHHcCChHHHHHHHHhc-CCCCCHH--hHHHHHHHHHhcCChhH
Q 045814 81 KQQNNVLLSIRFFQWLHSHYGFSPDLVS-CNVLFDSLVEARAFKVAMDFLDST-GFSPNPN--SLELYIQCLCESGLIEE 156 (427)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~--~~~~li~~~~~~~~~~~ 156 (427)
...+++..|.+.+....+. .|+... +-....+..+.|+++.|.+.+++. ...|+.. ..-+....+...|+++.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3568999999999877543 455443 344467788899999999999873 3345543 34445888889999999
Q ss_pred HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh------------HHHHHhcCChhHHHHHHHH
Q 045814 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------------IQAFCNDGKVSEGYELLRQ 224 (427)
Q Consensus 157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~ 224 (427)
|.+.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+.. .......+..+++.+.+..
T Consensus 172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999998655 7788999999999999999999999999976431 1111222333333445555
Q ss_pred HHHCCCC---CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 225 VLEDGLV---PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT-YEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 225 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
+...... .+...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...+...
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p 330 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD 330 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence 5543321 3778889999999999999999999999998743322111 12222233446788889999988877632
Q ss_pred CCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 301 VPDT--VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 301 ~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
. |. ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus 331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 34 566688999999999999999999655555578998899999999999999999999998653
No 36
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=9.1e-11 Score=99.28 Aligned_cols=260 Identities=10% Similarity=0.078 Sum_probs=135.4
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc------------hhHHHHHhcCChhHHH
Q 045814 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------------YLIQAFCNDGKVSEGY 219 (427)
Q Consensus 152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~l~~~~~~~g~~~~a~ 219 (427)
++.++|.+.|-+|.+.... +..+--+|.+.|.+.|..|+|+++.+.+.+.. -|..-|...|-+|.|+
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 4556666666666553222 33444455666666666666666666555541 1455556666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN----FTYEEVINGLCKSRKRLEAYRVFNDL 295 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m 295 (427)
++|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+.. ..|..+...+....+.+.|..++.+.
T Consensus 128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 666666554322 3345555666666666666666666655555443322 23445555555556666666666666
Q ss_pred HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh
Q 045814 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV 375 (427)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 375 (427)
.+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+....++
T Consensus 207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~-- 283 (389)
T COG2956 207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD-- 283 (389)
T ss_pred HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--
Confidence 554332 33333344455556666666666666666554333344555566666666666666666666555422222
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 418 (427)
.-..+-+.-....-.+.|..++.+-..+ +|+...+..+|+.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~ 324 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence 2222222222233333444433333222 4566555555554
No 37
>PF13041 PPR_2: PPR repeat family
Probab=99.48 E-value=1.1e-13 Score=87.23 Aligned_cols=50 Identities=54% Similarity=0.913 Sum_probs=43.6
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814 372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421 (427)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 421 (427)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++||+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888875
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=3.8e-11 Score=110.86 Aligned_cols=199 Identities=12% Similarity=0.005 Sum_probs=135.1
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
+...|.-+++.+.|++.|++.++.... ...+|+.+..-+.....+|.|...|...+..... +-..|--+.-.|.+.++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek 504 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEK 504 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccch
Confidence 444444455555555555555553322 5677777777777788888888888776544211 23345556677888888
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 364 (427)
++.|+-.|++..+.+.. +.+....+...+.+.|+.++|+++++++.....+ |+.+--.-...+...+++++|.+.+++
T Consensus 505 ~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred hhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence 88888888888776554 5666667777777888888888888888876544 333333344556677888888888888
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
+++. ++-+...|..+...|.+.|+.+.|+.-|--+.+...+++
T Consensus 583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 583 LKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8875 333566677777888888888888888877776544433
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.7e-11 Score=113.08 Aligned_cols=262 Identities=12% Similarity=0.051 Sum_probs=197.6
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHH-H
Q 045814 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELL-R 223 (427)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~-~ 223 (427)
+..+|...|+++... +.-+..+...+..+|-..+++++|+++|+.+.+... .-..+-...+ +-++..+ +
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-EVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-hHHHHHHHH
Confidence 467888888885554 333456777888889999999999999988877631 1111111111 1222222 2
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 303 (427)
.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++.++.+.. ...+|+.+..-+.....+|.|...|+..... |
T Consensus 412 ~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~ 485 (638)
T KOG1126|consen 412 DLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----D 485 (638)
T ss_pred HHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----C
Confidence 333332 236789999999999999999999999999887422 6789999999999999999999999998765 5
Q ss_pred hhhHH---HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814 304 TVMYT---TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380 (427)
Q Consensus 304 ~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 380 (427)
+..|| -+.-.|.+.++++.|+-.|+++.+.+.. +.+....+...+-+.|+.++|++++++....+.+ |+..--..
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~ 563 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR 563 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence 55554 4667799999999999999999987533 5667777888889999999999999999987544 55555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCCC
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 426 (427)
+..+...+++++|+..++++++. .|+ ...|..+-..|.+.|+.+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccch
Confidence 67778899999999999999985 454 566777778888887654
No 40
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.46 E-value=4.5e-10 Score=108.00 Aligned_cols=277 Identities=13% Similarity=0.115 Sum_probs=146.8
Q ss_pred CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCcCH------hhHHHHHHHHHHcCChhHHHHHHHHHHhcch-
Q 045814 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM---GVFGSI------KTWNSALLGCIKIDRTDLVWKLYHDLIESGY- 204 (427)
Q Consensus 135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~- 204 (427)
.+.++..|.+...+...|+++.|...|...+.. ...++. .+--.+...+...++++.|.++|..+++...
T Consensus 449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~ 528 (1018)
T KOG2002|consen 449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG 528 (1018)
T ss_pred CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence 355555566666666666666666666655543 111122 1122234444455566666666666655432
Q ss_pred hHHHHHhc-------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCHhhHHHHH
Q 045814 205 LIQAFCND-------GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFTYEEVI 276 (427)
Q Consensus 205 l~~~~~~~-------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll 276 (427)
.+.+|.+. +...+|..++.......- .++..++.+...+.+..++..|.+-|....+.-. .+|..+.-.|.
T Consensus 529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG 607 (1018)
T KOG2002|consen 529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG 607 (1018)
T ss_pred hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence 33333333 344556566655554322 2444454455556666666666665554443321 23444444444
Q ss_pred HHHHh------------cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045814 277 NGLCK------------SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344 (427)
Q Consensus 277 ~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 344 (427)
+.|.+ .+..++|+++|.+.++...+ |...-|-+...++..|++.+|..+|.+..+.... ...+|-.
T Consensus 608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lN 685 (1018)
T KOG2002|consen 608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLN 685 (1018)
T ss_pred HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeee
Confidence 44432 22345566666666655433 5555555566666666677777777666665431 3345666
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 414 (427)
+.++|..+|++..|.++|+...+. .-.-++.+.+.|.+++...|++.+|.+.+.......+.-....||.
T Consensus 686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~ 756 (1018)
T KOG2002|consen 686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL 756 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence 666666667777777766655433 2233556666666666666666666666666555433333344443
No 41
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.46 E-value=1.3e-09 Score=95.06 Aligned_cols=289 Identities=12% Similarity=0.063 Sum_probs=219.3
Q ss_pred HHHHHHH--cCChHHHHHHHHhcC-CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC
Q 045814 112 LFDSLVE--ARAFKVAMDFLDSTG-FSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187 (427)
Q Consensus 112 ll~~~~~--~~~~~~a~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 187 (427)
+.+++.+ .|+|..|++++.+.. ..+ ....|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 4444443 588999998887632 122 233455666777888899999999988887644556677777778888889
Q ss_pred ChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChhH
Q 045814 188 RTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-------TAFNKLISRFCEKKNFGR 252 (427)
Q Consensus 188 ~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~ 252 (427)
+.+.|..-.+++.+.+ ....+|.+.|++.+...++..+.+.|.-.+. .+|..+++-....+..+.
T Consensus 168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g 247 (400)
T COG3071 168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG 247 (400)
T ss_pred CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence 9998888888887764 3678889999999999999999988876443 467777777777666666
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 253 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
-...++....+ .+-+...-..++.-+.++|+.++|.++..+..+.+..|+ -...-.+.+-++.+.-.+..++-.+
T Consensus 248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 66666665443 344566777888889999999999999999998877665 2233456677888877777777665
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
.. +-++..+.++...|.+.+.|.+|...|+...+ ..|+..+|+.+..++.+.|+..+|..+.++....-..|+
T Consensus 323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 52 23457888899999999999999999997766 468999999999999999999999999988775544444
No 42
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-09 Score=104.29 Aligned_cols=375 Identities=11% Similarity=0.068 Sum_probs=285.5
Q ss_pred ccccccHHHHHHHHHHHhcCCCcchhhhhhhCCCCCCCChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHH
Q 045814 34 KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLF 113 (427)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll 113 (427)
-+++.++......+-+.+...++.. .+|.+ -+.++.-..++...|...|+.+.++ .+-+..+.-.|.
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~-----~l~~~------GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG 383 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNF-----VLPLV------GLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILG 383 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCc-----ccccc------chhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 3788999999999999998877651 12222 3466666789999999999999876 344566777777
Q ss_pred HHHHHcC----ChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH----hcCCCcCHhhHHHHHHHH
Q 045814 114 DSLVEAR----AFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK----EMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 114 ~~~~~~~----~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~ 183 (427)
..|...+ ..+.|..++.+. ....|...|-.+...+...+-+.. +.+|.... ..+-.+.+...|.+...+
T Consensus 384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh 462 (1018)
T KOG2002|consen 384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH 462 (1018)
T ss_pred hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence 7777664 567888888773 334567788888888766554444 77776544 456567889999999999
Q ss_pred HHcCChhHHHHHHHHHHhc---------c---------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045814 184 IKIDRTDLVWKLYHDLIES---------G---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~---------~---------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 245 (427)
...|+++.|...|+..... + -+...+-..++.+.|.+.+..+....+. =+..|--+.....
T Consensus 463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMAR 541 (1018)
T ss_pred HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHH
Confidence 9999999999999988765 1 1455556678999999999999876432 2334555554444
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHc--------
Q 045814 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIHGLCK-------- 316 (427)
Q Consensus 246 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~-------- 316 (427)
..+...+|...+......+ ..+...++.+.+.+.+..++..|.+-|+...+.- ..+|+.+.-+|...|.+
T Consensus 542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn 620 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN 620 (1018)
T ss_pred hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence 5678889999999887764 3466678888889999999999999888776542 22466666566665543
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814 317 ----MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392 (427)
Q Consensus 317 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (427)
.+..++|+++|.+.++... -|...-|-+.-.++..|++.+|..+|....+... -...+|-.+..+|...|++..
T Consensus 621 ~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~ 698 (1018)
T KOG2002|consen 621 PEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL 698 (1018)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH
Confidence 2457899999999998853 3778888888899999999999999999998743 256789999999999999999
Q ss_pred HHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCCC
Q 045814 393 AYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 393 A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
|+++|+...+. +-.-+......|.+++.+.|++.
T Consensus 699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~ 733 (1018)
T KOG2002|consen 699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ 733 (1018)
T ss_pred HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence 99999876665 55667889999999999998764
No 43
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.6e-10 Score=99.91 Aligned_cols=337 Identities=14% Similarity=0.120 Sum_probs=188.5
Q ss_pred CChHHHHHHHHHHhhcC-CCCCC--HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 045814 84 NNVLLSIRFFQWLHSHY-GFSPD--LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFC 159 (427)
Q Consensus 84 ~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~ 159 (427)
.++.+|+++++-+..+- .+..+ ....+.+--.+.+.|+++.|+..|+. +...|+..+--.|+-++...|+-++..+
T Consensus 251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmke 330 (840)
T KOG2003|consen 251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKE 330 (840)
T ss_pred hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHH
Confidence 45677778777765541 12212 22344444455678899999999887 5667887654445555556788888889
Q ss_pred HHHHHHhcCCCcCHhh--------HHHHHHHHHHc---------CC--hhHHHHHHHHHHhc--------c---------
Q 045814 160 AFSKLKEMGVFGSIKT--------WNSALLGCIKI---------DR--TDLVWKLYHDLIES--------G--------- 203 (427)
Q Consensus 160 ~~~~m~~~g~~p~~~~--------~~~ll~~~~~~---------~~--~~~a~~~~~~~~~~--------~--------- 203 (427)
.|.+|...-..||..- -..|+.--.+. +. .+++.-.--.++.. |
T Consensus 331 af~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk 410 (840)
T KOG2003|consen 331 AFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK 410 (840)
T ss_pred HHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence 9998876533332211 11122111111 11 11111110111100 0
Q ss_pred -------------hhHHHHHhcCChhHHHHHHHHHHHCCCC-------------------------------CCHHHHHH
Q 045814 204 -------------YLIQAFCNDGKVSEGYELLRQVLEDGLV-------------------------------PENTAFNK 239 (427)
Q Consensus 204 -------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------~~~~~~~~ 239 (427)
.-...|.+.|+++.|+++++-+....-+ .+..-||.
T Consensus 411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~ 490 (840)
T KOG2003|consen 411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA 490 (840)
T ss_pred HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence 0123456667777776666655433111 01111111
Q ss_pred HH-----HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----------------
Q 045814 240 LI-----SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER---------------- 298 (427)
Q Consensus 240 li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---------------- 298 (427)
.. +.....|++++|.+.+++....+-.-....||+=+ .+-..|++++|++.|-++...
T Consensus 491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 11 22344677777777777665543222222232222 234455555555555443211
Q ss_pred ----------------C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814 299 ----------------G-YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361 (427)
Q Consensus 299 ----------------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 361 (427)
. ++-|+...+-|...|-+.|+-.+|++.+-+--+. .+-+..|..-|...|....-++++..+
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 1 2224555666666666666666666554332222 233555666666667777777788888
Q ss_pred HHHHHHCCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 362 HKEMLDKGYGETTVTYNTLIAGL-CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
|++..- +.|+..-|..+|..| .+.|++++|+++|++...+ ++-|.....-|++.+...|..
T Consensus 649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 877654 679999999998655 5789999999999999876 566888888888888777753
No 44
>PF13041 PPR_2: PPR repeat family
Probab=99.41 E-value=7.4e-13 Score=83.36 Aligned_cols=49 Identities=47% Similarity=0.939 Sum_probs=22.5
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
No 45
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.40 E-value=3.1e-09 Score=101.63 Aligned_cols=317 Identities=13% Similarity=0.096 Sum_probs=237.5
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 183 (427)
....-.....+.-.|++++|.+++.+. .. +.+...|-+|...|-+.|+.+++...+-..-..... |...|..+....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls 217 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence 344444455555669999999999883 33 446779999999999999999999888655554434 678999999999
Q ss_pred HHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChh
Q 045814 184 IKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK----LISRFCEKKNFG 251 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~ 251 (427)
.+.|+++.|.-.|.+.++.+. -...|-+.|+...|.+-|.++.......|..-+.. .+..+...++-+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999998853 46678899999999999999998755334333333 455667778889
Q ss_pred HHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCC
Q 045814 252 RVSELLHTMVARN-RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG---------------------------YVPD 303 (427)
Q Consensus 252 ~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~p~ 303 (427)
.|.+.++.....+ -..+...++.+...|.+...++.|......+.... ..++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 9999998877632 24455678899999999999999998888876511 1122
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
..+ --+.-++.+....+....+..........| +...|.-+..+|...|++.+|.++|..+......-+...|-.+.
T Consensus 378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 222 122334445555666666666666666443 45678889999999999999999999999875555678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCCC
Q 045814 382 AGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~ 426 (427)
.+|...|.+++|.+.|+..... .|+ ...--.|-..+-+.|+.|
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~E 500 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHE 500 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHH
Confidence 9999999999999999999875 333 334445555666666654
No 46
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=7.1e-10 Score=95.53 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=149.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
...+...|++++|.+.+++....... +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++
T Consensus 38 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 38 ALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccH
Confidence 34445556666666666665554322 566788888899999999999999998887753 3556778888889999999
Q ss_pred HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 364 (427)
++|.+.+++.......+ ....+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999987653222 344667778888999999999999999887642 2456788888899999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus 195 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 195 YQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8876 3446677778888888999999999998887653
No 47
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.36 E-value=9.4e-09 Score=89.85 Aligned_cols=279 Identities=12% Similarity=0.085 Sum_probs=212.5
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcC-C--CCCHHhHHHHHHHHHhcCChhHHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-F--SPNPNSLELYIQCLCESGLIEEAFC 159 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~li~~~~~~~~~~~A~~ 159 (427)
.|++.+|.+......+. + .-....|..-.++..+.|+.+.+-.++.+.. . .++...+-+..+.....|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~-~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 58899999888876433 2 2234455556778888999999999998743 2 3445566677788899999999999
Q ss_pred HHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch----------------hHHHHHhcCChhHHHHHHH
Q 045814 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----------------LIQAFCNDGKVSEGYELLR 223 (427)
Q Consensus 160 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~ 223 (427)
-.+.+.+.+.. ..........+|.+.|++..+..+...+.+.+. ++.-....+..+.-...++
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 99999988766 678889999999999999999999999998864 2222222233333333454
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 303 (427)
..... ..-++..-.+++.-+.+.|+.++|.++.++..+++..|. -...-.+.+-++...-.+..+.-.+.-.. +
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence 44332 333566777888889999999999999999999987766 22233456778888888877776554332 5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 372 (427)
+..+.++...|.+.+.+.+|...|+...+. .|+..+|+.+.+++.+.|+..+|.++.++....-..|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 578899999999999999999999977775 7899999999999999999999999999877443333
No 48
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.35 E-value=6.1e-08 Score=89.87 Aligned_cols=331 Identities=10% Similarity=-0.025 Sum_probs=229.1
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHH
Q 045814 80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A 157 (427)
+...+..+-|..+|..+..- ++.+...|......=-..|..+....+|++. .++.....|-.....+-..|++..|
T Consensus 526 ~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a 603 (913)
T KOG0495|consen 526 CEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA 603 (913)
T ss_pred HHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence 33445556666666666442 4556667776666656667888888888772 3344455677777778888999999
Q ss_pred HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh-------HHHHHhcCChhHHHHHHHHHHHCCC
Q 045814 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------IQAFCNDGKVSEGYELLRQVLEDGL 230 (427)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~ 230 (427)
..++....+.... +...|-..+.......++++|..+|.+....+-- +....-.++.++|.+++++..+.-
T Consensus 604 r~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f- 681 (913)
T KOG0495|consen 604 RVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF- 681 (913)
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-
Confidence 9999888887555 7788888888888999999999999888776431 222334577888888888877642
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (427)
..-...|-.+...+-+.++.+.|.+.|..-.+. ++-.+-.|-.+.+.--+.|.+-.|..++++..-.+.. +...|-..
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~ 759 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLES 759 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHH
Confidence 213446777777888888888888888765444 2334557777777778888899999999998877665 77888899
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 390 (427)
|+.-.+.|..+.|..++.+..+. ++-+...|..-|....+.++-.+....+++ +..|++..-.+...+....++
T Consensus 760 Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~ 833 (913)
T KOG0495|consen 760 IRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKI 833 (913)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHH
Confidence 99999999999999888887765 333455566666655555554333333332 233666666666667777777
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 045814 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 423 (427)
++|.+.|.+..+.+.. +-.+|.-+..-+.++|
T Consensus 834 ~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 834 EKAREWFERAVKKDPD-NGDAWAWFYKFELRHG 865 (913)
T ss_pred HHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence 7777777776665322 3456666666666666
No 49
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=8.4e-11 Score=111.67 Aligned_cols=264 Identities=13% Similarity=0.102 Sum_probs=133.2
Q ss_pred hcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh
Q 045814 98 SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK 174 (427)
Q Consensus 98 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 174 (427)
+..|+.|+..||..+|.-|+..|+.+.|- +|.-| ....+...|+.++.+...+++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 34577777777777777777777777766 54432 22344556777777777777766665 56677
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 045814 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254 (427)
Q Consensus 175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 254 (427)
||..|..+|...||... |+ .+.+.+. .++..+...|--....
T Consensus 85 tyt~Ll~ayr~hGDli~----fe-------------------~veqdLe---------------~i~~sfs~~Gvgs~e~ 126 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL----FE-------------------VVEQDLE---------------SINQSFSDHGVGSPER 126 (1088)
T ss_pred HHHHHHHHHHhccchHH----HH-------------------HHHHHHH---------------HHHhhhhhhccCcHHH
Confidence 77777777777776544 11 1111111 1111112222222222
Q ss_pred HHHHHHh-hCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 045814 255 ELLHTMV-ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG-WLGDARKMWFEMIH 332 (427)
Q Consensus 255 ~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~ 332 (427)
.++..+. ..+.-||.. ..+....-.|.++.+.+++..+...... . ++-..++-+.... .+++...+.....+
T Consensus 127 ~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e 200 (1088)
T KOG4318|consen 127 WFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE 200 (1088)
T ss_pred HHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc
Confidence 2221111 011122221 1122222334444444444443222110 0 1111122222221 22333322222222
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412 (427)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 412 (427)
.|+..+|..++++-...|+.+.|..++.+|.+.|++.+.+-|..|+-+ .++...+..+++-|.+.|+.|+..|+
T Consensus 201 ---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ 274 (1088)
T KOG4318|consen 201 ---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ 274 (1088)
T ss_pred ---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence 466666666666666666666666666666666666666655555554 56666666666666666666666666
Q ss_pred HHHHHHHHhcC
Q 045814 413 NTLIQGYCKEG 423 (427)
Q Consensus 413 ~~li~~~~~~g 423 (427)
...+-.+.+.|
T Consensus 275 adyvip~l~N~ 285 (1088)
T KOG4318|consen 275 ADYVIPQLSNG 285 (1088)
T ss_pred HHHHHhhhcch
Confidence 66665555543
No 50
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.34 E-value=5.5e-09 Score=98.51 Aligned_cols=283 Identities=17% Similarity=0.146 Sum_probs=199.5
Q ss_pred HHHHHHcCChHHHHHHHHh-cCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc----
Q 045814 113 FDSLVEARAFKVAMDFLDS-TGFSPNP-NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI---- 186 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~-~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---- 186 (427)
..++.+.|++++|++.+++ .+.-+|. .........+.+.|+.++|..+|..+.+.++. +..-|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 3456788899999988876 3334554 45566678888889999999999998887543 444455555554222
Q ss_pred -CChhHHHHHHHHHHhcch-------hHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814 187 -DRTDLVWKLYHDLIESGY-------LIQAFCNDGKV-SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257 (427)
Q Consensus 187 -~~~~~a~~~~~~~~~~~~-------l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 257 (427)
.+.+....+|+++.+.-. +.-.+.....+ ..+...+..+...|++ .+|+.|-..|....+..-..+++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 245667777777765521 11111111122 3455666777778865 36777777777666666666666
Q ss_pred HHHhhC----C----------CCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCH
Q 045814 258 HTMVAR----N----------RAPDN--FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWL 320 (427)
Q Consensus 258 ~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~ 320 (427)
...... + -.|+. .++..+...|...|++++|+.+.++..+.. |+ +..|..-...+-+.|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence 665432 1 12333 355666788889999999999999999884 44 56888889999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhh--------HHHHHHHHHhcCCHHH
Q 045814 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT--------YNTLIAGLCLHGRTDE 392 (427)
Q Consensus 321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~~~~ 392 (427)
.+|.+.++..+..+.. |...=+-....+.+.|++++|.+++......+..|-... ......+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999998654 777777788899999999999999999987765433221 2445678899999999
Q ss_pred HHHHHHHHHH
Q 045814 393 AYHLFEEMAQ 402 (427)
Q Consensus 393 A~~~~~~m~~ 402 (427)
|++-|....+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9887766554
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1e-08 Score=91.14 Aligned_cols=143 Identities=12% Similarity=-0.009 Sum_probs=71.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356 (427)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (427)
+.|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|..-++.+++-. +-|-..|-.+.++|.-.+...
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchH
Confidence 3344444555555555555555433 34455555555555555555555555555442 224445555555555555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 045814 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 357 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 423 (427)
-|.-+|++..+.. +.|...|.+|.++|.+.++.++|.+-|......|-. +...+..|.+.|-+.+
T Consensus 416 YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~ 480 (559)
T KOG1155|consen 416 YALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELK 480 (559)
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHH
Confidence 5555555554432 224555555555555555555555555555444322 3344444444444433
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.32 E-value=2.8e-09 Score=91.77 Aligned_cols=200 Identities=11% Similarity=0.001 Sum_probs=126.8
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~ 217 (427)
...+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~---------------------- 87 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDS---------------------- 87 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHH----------------------
Confidence 455666677777777777777777777654322 344444444444444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
+++....... +...+..+...+...|++++|.+.+++.......+ ....+..+...+...|++++|...+.+..
T Consensus 88 ----~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 162 (234)
T TIGR02521 88 ----FRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL 162 (234)
T ss_pred ----HHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333222 44556666667777777777777777776543222 23455666677777888888888888777
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+.... +...+..+...+...|++++|...+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus 163 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 163 QIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 65432 4556777777777888888888888877766 233455666667777777888888877776654
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=99.32 E-value=2.8e-09 Score=103.66 Aligned_cols=193 Identities=11% Similarity=-0.018 Sum_probs=93.9
Q ss_pred CHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc---------CChhHHHHHHHHHHhc
Q 045814 137 NPNSLELYIQCLCE-----SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI---------DRTDLVWKLYHDLIES 202 (427)
Q Consensus 137 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~ 202 (427)
+...|...+++-.. .+.+++|.+.|++..+.... +...|..+..++... ++.++|...+++.++.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 45555555555322 23467888888888876433 445555555444322 2245555555555544
Q ss_pred c--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 045814 203 G--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274 (427)
Q Consensus 203 ~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 274 (427)
+ .+...+...|++++|...+++..+.++. +...+..+...+...|++++|...+++..+..+. +...+..
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 2 1333444555555555555555554322 3344445555555555555555555555554322 1112222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
++..+...|++++|...++++.+....-+...+..+..++...|+.++|...+.++..
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 2223444555555555555554332111223344444455555555555555555433
No 54
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=4.3e-10 Score=95.36 Aligned_cols=220 Identities=11% Similarity=0.026 Sum_probs=155.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhH-HHHHHHHHHcC
Q 045814 110 NVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW-NSALLGCIKID 187 (427)
Q Consensus 110 ~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~ 187 (427)
+.+...|.+.|.+.+|.+.|+. ....|-+.||-.|-+.|.+.+++..|+.+|.+-.+. .|-.+|| .-+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence 4566777888888888888876 455677888888888888888888888888777764 3444444 45566777777
Q ss_pred ChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814 188 RTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259 (427)
Q Consensus 188 ~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 259 (427)
+.++|.++|+...+.. .+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.++++-++.-|.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 7888888887777652 2556677777788888888888877776 667777777777777777777777777
Q ss_pred HhhCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 260 MVARNRAPDN--FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 260 m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
....--.|+. .+|-.+-......|++..|.+-|+-....+.. ....+|.|.-.-.+.|++++|..+++.....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 6655433332 45666666666777777777777776655433 4456777766667777777777777776554
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.30 E-value=5e-10 Score=106.55 Aligned_cols=69 Identities=10% Similarity=0.052 Sum_probs=53.3
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhH
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE 156 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 156 (427)
.-+...++.+.|- +|..|+.+ ...-+...|+.++....+.++.+.+. .|.+.+|..|..+|...|++..
T Consensus 33 arYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 33 ARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred HHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC--------CCchhHHHHHHHHHHhccchHH
Confidence 3344567777776 88888544 46667888999998888888766554 7889999999999999999765
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.30 E-value=5.9e-09 Score=101.40 Aligned_cols=257 Identities=11% Similarity=0.029 Sum_probs=181.3
Q ss_pred CCHhhHHHHHHHHHH-----cCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHh---------cCChhHHHHHHHHHHhc
Q 045814 104 PDLVSCNVLFDSLVE-----ARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCE---------SGLIEEAFCAFSKLKEM 167 (427)
Q Consensus 104 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~ 167 (427)
.+...|...+.+... .+.+++|..+|++ ....|+ ...|..+..++.. .+++++|...+++..+.
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 345566666665432 2346789999987 555665 4566666555442 34588999999999987
Q ss_pred CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045814 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239 (427)
Q Consensus 168 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (427)
+.. +...+..+...+...|++++|...|++.++.+ .+...+...|++++|...+++..+..+. +...+..
T Consensus 334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~ 411 (553)
T PRK12370 334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT 411 (553)
T ss_pred CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence 655 78888888899999999999999999998874 2677888999999999999999987654 3333344
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319 (427)
Q Consensus 240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (427)
++..+...|++++|...+++......+-+...+..+...+...|+.++|...+.++...... +....+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g- 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS- 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH-
Confidence 45556778999999999999876642224456777888889999999999999998665221 3444555666777777
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 320 LGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 320 ~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
++|...++.+.+.. -.+....+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 490 -~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 490 -ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 47777777766541 12222222 33345556776666665 777765
No 57
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=6e-10 Score=94.53 Aligned_cols=229 Identities=11% Similarity=0.044 Sum_probs=185.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHH
Q 045814 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221 (427)
Q Consensus 142 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 221 (427)
+.+.++|.+.|.+.+|.+.|+.-.+. .|-+.||-.|-++|.+..+...|+.++.+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~g---------------------- 282 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEG---------------------- 282 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhh----------------------
Confidence 67889999999999999999988875 455667777777777766666666555433
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 222 LRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 222 ~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
.+. .| |+....-..+.+-..++.++|.++++...+.. ..++....++...|.-.++++-|++.|+++.+.|+
T Consensus 283 ----ld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~ 355 (478)
T KOG1129|consen 283 ----LDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA 355 (478)
T ss_pred ----hhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC
Confidence 332 23 33344456677788899999999999988774 34677888888899999999999999999999998
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 045814 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE--YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378 (427)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 378 (427)
. +...|+.+.-+|.-.+++|-++--|++....--.|+. ..|-.+-......||+..|.+.|+-...++-. +...+|
T Consensus 356 ~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealn 433 (478)
T KOG1129|consen 356 Q-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALN 433 (478)
T ss_pred C-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHH
Confidence 7 8889999999999999999999999998876544543 45777777788899999999999998877433 678899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 379 TLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.|.-.-.+.|++++|..+++.....
T Consensus 434 NLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9998889999999999999998875
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.4e-07 Score=84.37 Aligned_cols=153 Identities=11% Similarity=0.197 Sum_probs=96.8
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH
Q 045814 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGL----CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322 (427)
Q Consensus 247 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 322 (427)
..|.+.+.++++..++. ++...+||.-+--.| .++.++..|.+++.... |.-|...+|...|..-.+.++++.
T Consensus 379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR 455 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR 455 (677)
T ss_pred hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence 44455555555554442 222334444333333 24556666666666554 335666777777777777777888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+..+|++.++.+.. |..+|......-...|+.+.|..+|.-.+... .......|.+.|+.-...|.+++|..+++++.
T Consensus 456 cRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 456 CRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 88888887776532 55666666666667788888888888777552 22234567777777777888888888888887
Q ss_pred HC
Q 045814 402 QK 403 (427)
Q Consensus 402 ~~ 403 (427)
+.
T Consensus 535 ~r 536 (677)
T KOG1915|consen 535 DR 536 (677)
T ss_pred Hh
Confidence 75
No 59
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=6.5e-09 Score=96.95 Aligned_cols=260 Identities=18% Similarity=0.182 Sum_probs=171.4
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CcCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHh
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLKEM-----GV-FGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN 211 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~ 211 (427)
.+...|...|...|+++.|+.+++...+. |. .|.+. ..+.+...|...+++++|..+|+++
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A------------ 267 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA------------ 267 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH------------
Confidence 45666888999999999999999877654 21 11111 1222334444455555554443322
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-----CC-CCCH-hhHHHHHHHHHhcCC
Q 045814 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-----NR-APDN-FTYEEVINGLCKSRK 284 (427)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~ll~~~~~~~~ 284 (427)
+.+++........--..+++.|...|.+.|++++|...+++..+- +. .|.+ ..++.+...++..++
T Consensus 268 -------L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 268 -------LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE 340 (508)
T ss_pred -------HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc
Confidence 222332222222223457777888899999998888777765431 21 2233 356777788889999
Q ss_pred hHHHHHHHHHHHhC-----CCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHh
Q 045814 285 RLEAYRVFNDLKER-----GYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-----G--LLPNEYTYNSMIHGYC 350 (427)
Q Consensus 285 ~~~a~~~~~~m~~~-----~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p~~~~~~~li~~~~ 350 (427)
+++|..++....+. |.. --..+++.|...|...|++++|++++++++.. | ..-....++.+...|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 99999999876432 211 12358999999999999999999999998754 1 1122456788888999
Q ss_pred hcCCHHHHHHHHHHHHHC----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhHHHHHHH
Q 045814 351 RIDNLEEAKRLHKEMLDK----GYG-E-TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK------GIFRDVITYNTLIQ 417 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~----~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~ 417 (427)
+.+.+.+|.++|.+.... |.. | ...+|..|...|...|++++|.++.+..... ...|+.........
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA 499 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence 999999999998875432 221 2 2578999999999999999999998877532 33455554444433
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.24 E-value=3.8e-09 Score=93.53 Aligned_cols=335 Identities=11% Similarity=0.109 Sum_probs=190.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC------HHhHHHHHHHHHhcCChhHHH
Q 045814 86 VLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN------PNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 86 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~------~~~~~~li~~~~~~~~~~~A~ 158 (427)
...|+..++.+.+..-++-.-..--.+-.++.+...+.+|+++++- ....|+ ....+.+.-.+.+.|.++.|+
T Consensus 217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai 296 (840)
T KOG2003|consen 217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI 296 (840)
T ss_pred HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence 4556666665544332222222223344566788889999999875 333343 345667777788999999999
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------------hhHHH---------HHhc
Q 045814 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------------YLIQA---------FCND 212 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------~l~~~---------~~~~ 212 (427)
..|+...+. .|+..+--.|+-++--.|+.++..+.|..|+..- .|+.- .-+.
T Consensus 297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~ 374 (840)
T KOG2003|consen 297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE 374 (840)
T ss_pred hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence 999988775 5777666666666777899999999999988651 12111 1111
Q ss_pred CC--hhHHHHHHHHHHHCCCCCCHH---------------------HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH
Q 045814 213 GK--VSEGYELLRQVLEDGLVPENT---------------------AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269 (427)
Q Consensus 213 g~--~~~a~~~~~~~~~~~~~~~~~---------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 269 (427)
.+ -++++-.--+++..-+.|+-. .--.-...+.+.|+++.|.++++.+.+.+-+.-.
T Consensus 375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s 454 (840)
T KOG2003|consen 375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS 454 (840)
T ss_pred hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence 11 111111111111111112110 0011235688999999999999887765332211
Q ss_pred hhHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814 270 FTYEEVI------------------------------------NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313 (427)
Q Consensus 270 ~~~~~ll------------------------------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (427)
..-+.|- +.....|++++|.+.|.+.....-.-....||+ .-.
T Consensus 455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt 533 (840)
T KOG2003|consen 455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLT 533 (840)
T ss_pred HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-ccc
Confidence 1111110 011235799999999999987633322333442 334
Q ss_pred HHccCCHHHHHHHHHHHHHc--------------------------------C-CCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814 314 LCKMGWLGDARKMWFEMIHK--------------------------------G-LLPNEYTYNSMIHGYCRIDNLEEAKR 360 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~--------------------------------~-~~p~~~~~~~li~~~~~~g~~~~a~~ 360 (427)
+...|++++|++.|-++... . ++.|+....-|...|-+.|+-..|.+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq 613 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ 613 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence 55678888887777665432 1 12233344444444555555555544
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hcCCCC
Q 045814 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC-KEGKIV 426 (427)
Q Consensus 361 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~ 426 (427)
.+-+--.. ++-+..+..-|..-|....-+++|..+|++..- +.|+..-|..+|..|. +.|.+.
T Consensus 614 ~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyq 677 (840)
T KOG2003|consen 614 CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQ 677 (840)
T ss_pred hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHH
Confidence 43332221 334555555555566666666677777766543 6899999999887665 456543
No 61
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.23 E-value=6.1e-07 Score=83.47 Aligned_cols=323 Identities=12% Similarity=0.055 Sum_probs=158.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-------cCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814 86 VLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-------TGFSPNPNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 86 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~ 158 (427)
++-|.++++.+++. ++-+...|.+-...=-..|+.+.+.+++++ -|+.-+...|-.=...|-+.|.+-.+.
T Consensus 422 YenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ 499 (913)
T KOG0495|consen 422 YENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ 499 (913)
T ss_pred HHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence 34444555555432 455566665555555556666666665543 244445555544455555555555555
Q ss_pred HHHHHHHhcCCCcC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------------------------------
Q 045814 159 CAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------------------------- 204 (427)
Q Consensus 159 ~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------------------------- 204 (427)
.+.......|+.-. ..||..-...|.+.+.++-|..+|...++.-.
T Consensus 500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~ 579 (913)
T KOG0495|consen 500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ 579 (913)
T ss_pred HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 55555555544421 23455555555555555555555555544311
Q ss_pred ----------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 045814 205 ----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE 274 (427)
Q Consensus 205 ----------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 274 (427)
....+-..|++..|..++....+.... +...|-..+..-.....++.|..+|.+.... .|+..+|.-
T Consensus 580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 122233345555555555555444332 4444555555555555555555555544432 334444444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
-+....-.+..++|.+++++..+. -|+ ...|..+.+.+-+.++++.|...|..-.+. ++-....|-.+.+.--+.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence 444444445555555555554443 122 224444444555555555555544433322 1112233444444444555
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 418 (427)
.+-+|..++++..-.+.+ +...|-..|++-.+.|+.+.|..++.+..+. ++-+...|..-|..
T Consensus 734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l 796 (913)
T KOG0495|consen 734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL 796 (913)
T ss_pred chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence 666666666665544322 5556666666666666666666666555543 22234444444433
No 62
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.23 E-value=4.3e-09 Score=98.14 Aligned_cols=241 Identities=16% Similarity=0.142 Sum_probs=175.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc--------CC-CCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhc-----C--
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST--------GF-SPNPN-SLELYIQCLCESGLIEEAFCAFSKLKEM-----G-- 168 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g-- 168 (427)
..+...+...|...|+++.|..+++.. |. .|... ..+.+...|...+++.+|..+|+++... |
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446777899999999999999998752 21 23333 3455778899999999999999998743 2
Q ss_pred CCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc
Q 045814 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-TAFNKLISRFCEK 247 (427)
Q Consensus 169 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~ 247 (427)
.+--+.+++.|..+|.+.|++++|...++ .|+++++..... ..|.+ ..++.+...|+..
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e-------------------~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~ 338 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCE-------------------RALEIYEKLLGA-SHPEVAAQLSELAAILQSM 338 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHH-------------------HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHh
Confidence 11134567777788999999999988865 445555552211 11222 2466677788889
Q ss_pred CChhHHHHHHHHHhhC---CCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC--CC-ChhhHHHHHHH
Q 045814 248 KNFGRVSELLHTMVAR---NRAPD----NFTYEEVINGLCKSRKRLEAYRVFNDLKER----GY--VP-DTVMYTTVIHG 313 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~p-~~~~~~~li~~ 313 (427)
+++++|..++....+. -+.++ ..+++.|...|.+.|++++|+++|++.... +. .+ ....++.+...
T Consensus 339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 9999999998865542 12222 358999999999999999999999988543 11 12 24577889999
Q ss_pred HHccCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 314 LCKMGWLGDARKMWFEMIHK----GL-LPN-EYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
|.+.+++++|.++|.+...- |. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999999999888875432 32 223 4688999999999999999999998876
No 63
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1e-07 Score=85.47 Aligned_cols=189 Identities=14% Similarity=0.155 Sum_probs=100.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 045814 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 288 (427)
|....+.++..+.|.+..+.+.. ++.+|..-...+.-.+++++|..=|++.+..... +...|-.+.-+..+.++++++
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~ 447 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAES 447 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433322 3333433334444444444555545444443211 334444444555566666777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-----CCHHH--HHHHHHHHhhcCCHHHHHHH
Q 045814 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-----PNEYT--YNSMIHGYCRIDNLEEAKRL 361 (427)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~--~~~li~~~~~~g~~~~a~~~ 361 (427)
+..|++..++-.. .+..|+.....+...++++.|.+.|+..++.... .+..+ --.++.. --.+++..|.++
T Consensus 448 m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~L 525 (606)
T KOG0547|consen 448 MKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENL 525 (606)
T ss_pred HHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHH
Confidence 7777766655222 4456666677777777777777777766654211 11111 1111111 122667777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+.+..+.+.+ ....|..|...-...|+.++|+++|++-..
T Consensus 526 l~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 526 LRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777665322 345677777888888888888888877543
No 64
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=6e-08 Score=86.96 Aligned_cols=335 Identities=13% Similarity=0.070 Sum_probs=225.0
Q ss_pred cCChHHHHHHHHHHhhcCCCCCC-HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChhHHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPD-LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIEEAFC 159 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~A~~ 159 (427)
.+.++.|++++.|+.. +.|| +.-|.....+|...|+|+++.+.-.+ ..+.|+ +..+.-=..++-..|++++|+.
T Consensus 128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~ 204 (606)
T KOG0547|consen 128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALF 204 (606)
T ss_pred cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHH
Confidence 4678999999999975 4788 77888888899999999998887655 566676 4466666778888999988865
Q ss_pred HHHHH-------------------------------Hhc--CCCcCHhhHHHHHHHHHHc--------C---C--hhHHH
Q 045814 160 AFSKL-------------------------------KEM--GVFGSIKTWNSALLGCIKI--------D---R--TDLVW 193 (427)
Q Consensus 160 ~~~~m-------------------------------~~~--g~~p~~~~~~~ll~~~~~~--------~---~--~~~a~ 193 (427)
=.... .+. -+.|+.....+.+..+... + + ..++.
T Consensus 205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l 284 (606)
T KOG0547|consen 205 DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL 284 (606)
T ss_pred hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence 33311 100 1223333333333222110 0 0 01111
Q ss_pred HHHHHH------------Hhc----------c-------hhHHH-------HHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 045814 194 KLYHDL------------IES----------G-------YLIQA-------FCNDGKVSEGYELLRQVLEDGLVPENTAF 237 (427)
Q Consensus 194 ~~~~~~------------~~~----------~-------~l~~~-------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 237 (427)
+-+..- .+. + .+..+ +.-.|+...|.+-|+..+.....++ ..|
T Consensus 285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~ly 363 (606)
T KOG0547|consen 285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLY 363 (606)
T ss_pred HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHH
Confidence 111111 000 0 02222 2335778888888888887665533 337
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 045814 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317 (427)
Q Consensus 238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (427)
--+..+|...++.++..+.|....+.+.. +..+|..-...+.-.+++++|..=|++....... ++..|-.+..+..+.
T Consensus 364 I~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~ 441 (606)
T KOG0547|consen 364 IKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQ 441 (606)
T ss_pred HHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHH
Confidence 77778899999999999999988877643 5667877777888888999999999998887544 566777777777788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-----C--CCChhhHHHHHHHHHhcCCH
Q 045814 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-----Y--GETTVTYNTLIAGLCLHGRT 390 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~--~p~~~~~~~li~~~~~~g~~ 390 (427)
+++++++..|++.++. .+--+..|+.....+...+++++|.+.|+..++.. + .+.+.+-..++..-.+ +++
T Consensus 442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~ 519 (606)
T KOG0547|consen 442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence 9999999999999886 34346789999999999999999999999887642 1 1112222333333333 889
Q ss_pred HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 391 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
..|..++++..+...+ ....|..|-+.-...|+.+
T Consensus 520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPK-CEQAYETLAQFELQRGKID 554 (606)
T ss_pred HHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHH
Confidence 9999999998875433 3456777766666666554
No 65
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.18 E-value=5.2e-07 Score=80.82 Aligned_cols=311 Identities=14% Similarity=0.157 Sum_probs=207.1
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAF 161 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 161 (427)
.+|...|.++|.... ..+|+...|++.|+.=.+-+.++.|..++++ .-+.|++.+|--..+.=.++|.+..|..+|
T Consensus 154 LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 477777888887543 3678889999988888888888888888887 344577777766666666667666666666
Q ss_pred HHHHhc-CC-Cc--------------------------------------------------------------------
Q 045814 162 SKLKEM-GV-FG-------------------------------------------------------------------- 171 (427)
Q Consensus 162 ~~m~~~-g~-~p-------------------------------------------------------------------- 171 (427)
+...+. |- .-
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 654432 10 00
Q ss_pred ----------CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc------------------hhHHHHHhcCChhHHHHHHH
Q 045814 172 ----------SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------------------YLIQAFCNDGKVSEGYELLR 223 (427)
Q Consensus 172 ----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------~l~~~~~~~g~~~~a~~~~~ 223 (427)
|-.+|--.++.-...|+.+...++|+..+..- ..+-.-....+.+.+.++++
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11122222222223333333333333333220 01112224566777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHH----HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814 224 QVLEDGLVPENTAFNKLISRF----CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 299 (427)
..++. ++....||..+=-.| .+..++..|.+++...+. .-|-..+|...|..-.+.+.++.+..+|++..+.+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 76662 233445555443333 467889999999987764 46777889999999999999999999999999987
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 045814 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN 378 (427)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 378 (427)
+. +..+|.-....-...|+.+.|..+|.-..... .......|-..|..-...|.+++|..+++.+++. .+...+|-
T Consensus 468 Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWi 544 (677)
T KOG1915|consen 468 PE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWI 544 (677)
T ss_pred hH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHH
Confidence 76 88899888888889999999999999988763 2223446667777777889999999999999876 23444565
Q ss_pred HHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 045814 379 TLIAGLC-----LHG-----------RTDEAYHLFEEMAQ 402 (427)
Q Consensus 379 ~li~~~~-----~~g-----------~~~~A~~~~~~m~~ 402 (427)
+...--. ..| ....|..+|++...
T Consensus 545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 5544322 223 45678888877644
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7.8e-08 Score=87.76 Aligned_cols=277 Identities=15% Similarity=0.095 Sum_probs=215.7
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 045814 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178 (427)
Q Consensus 101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 178 (427)
+...|+.....-.+-+-..+++.+..++.+.. ..++....+..-|.++...|+..+-..+=.++.+.-+. .+.+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence 45667777777888888899999999988872 33556777777788999999988888888888876444 7889999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC
Q 045814 179 ALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLED--GLVPENTAFNKLISRFCEKK 248 (427)
Q Consensus 179 ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 248 (427)
+.--|.-.|..++|.+.|.+....+ .+...|+-.|..++|+..+...-+. |.. -+ +--+.--|.+.+
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP--~LYlgmey~~t~ 394 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LP--SLYLGMEYMRTN 394 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-ch--HHHHHHHHHHhc
Confidence 9999999999999999998877653 2677788888899999888776653 322 11 222344678889
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC--CCChhhHHHHHHHHHccCCHHH
Q 045814 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----GY--VPDTVMYTTVIHGLCKMGWLGD 322 (427)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~p~~~~~~~li~~~~~~g~~~~ 322 (427)
+.+.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|...+.. +. ..-..+++.|..+|.+.+.+++
T Consensus 395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 9999999999887663 447778888888888889999999999887622 10 1134568889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
|+..+++..... +-|..++.++.-.|...|+++.|.+.|.+... +.||..+...++..+.
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 999999998874 44888999999999999999999999998875 5678777777766544
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.11 E-value=1.1e-07 Score=77.26 Aligned_cols=205 Identities=11% Similarity=0.017 Sum_probs=169.3
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
+.-+|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence 566788999999999999999887654 6778999999999999999999999999887533 56788888889999999
Q ss_pred hHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 363 (427)
+++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++..|..+++
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence 999999999998762222 2347888888888999999999999999987533 34567778888889999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 415 (427)
.....+. ++..+.-..|+.-...|+.+.+-++=.++... .|...-|..+
T Consensus 198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f 246 (250)
T COG3063 198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF 246 (250)
T ss_pred HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence 9988765 78888888999999999999998888887764 5666555443
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.2e-07 Score=77.15 Aligned_cols=186 Identities=11% Similarity=0.003 Sum_probs=158.7
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (427)
+...|.-.|...|+...|..-+++.++.+.. +..+|..+...|-+.|..+.|.+-|++....... +..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 5666778899999999999999999998533 5679999999999999999999999999887554 6678888888999
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045814 316 KMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 394 (427)
..|++++|...|++....-.-+. ..||..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 99999999999999988633222 357888888889999999999999999987433 4567778888999999999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 395 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
.+++.....|. ++..+.-..|+.-.+.|+.
T Consensus 194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~ 223 (250)
T COG3063 194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDR 223 (250)
T ss_pred HHHHHHHhccc-ccHHHHHHHHHHHHHhccH
Confidence 99999998876 8888888888887777764
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=6.2e-07 Score=84.87 Aligned_cols=284 Identities=12% Similarity=0.092 Sum_probs=195.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHH-h----
Q 045814 77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLC-E---- 150 (427)
Q Consensus 77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~-~---- 150 (427)
..++...++++.|++.++.-... +.............+.+.|+.++|...+.. ....|+...|-..+..+. -
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 45777889999999999776433 334456777778899999999999999998 566787777655554443 2
Q ss_pred -cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh-hHHHHHHHHHHhcch------hHHHHHhcCChhHHHHHH
Q 045814 151 -SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-DLVWKLYHDLIESGY------LIQAFCNDGKVSEGYELL 222 (427)
Q Consensus 151 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~------l~~~~~~~g~~~~a~~~~ 222 (427)
....+...++|+++...- |.......+.-.+..-..+ ..+...+..+...|+ +-..|....+.+-..+++
T Consensus 89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence 235677888888887653 2222222221111111111 233344444444443 333344444455555555
Q ss_pred HHHHHC----C----------CCCCH--HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCh
Q 045814 223 RQVLED----G----------LVPEN--TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD-NFTYEEVINGLCKSRKR 285 (427)
Q Consensus 223 ~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~ 285 (427)
...... + -.|+. .++.-+...|...|++++|.+.+++.+++. |+ +..|..-.+.+-..|++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence 555432 1 12333 355667788889999999999999999884 44 56888888999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHhhcCCHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY--------NSMIHGYCRIDNLEE 357 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~~~~ 357 (427)
.+|.+.++........ |-..-+-.+..+.++|++++|.+++....+.+..|-...+ .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999988665 7777788889999999999999999998877654433222 345678899999999
Q ss_pred HHHHHHHHHH
Q 045814 358 AKRLHKEMLD 367 (427)
Q Consensus 358 a~~~~~~m~~ 367 (427)
|++.|..+.+
T Consensus 324 ALk~~~~v~k 333 (517)
T PF12569_consen 324 ALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHH
Confidence 9887776654
No 70
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.3e-07 Score=83.06 Aligned_cols=263 Identities=12% Similarity=0.019 Sum_probs=205.1
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCC-CCCHHhHHHHHHHHHhcCChhHH
Q 045814 80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGF-SPNPNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~A 157 (427)
+-..+++..-+++++.+....++ ....+..-|..+.+.|+..+...+=.+ ... +..+.+|-++.--|.-.|+..+|
T Consensus 254 ~y~~c~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seA 331 (611)
T KOG1173|consen 254 LYYGCRFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEA 331 (611)
T ss_pred HHHcChHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHH
Confidence 33567888888999888776444 444555556688888877665554443 222 34577899999999999999999
Q ss_pred HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc--c------hhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--G------YLIQAFCNDGKVSEGYELLRQVLEDG 229 (427)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~------~l~~~~~~~g~~~~a~~~~~~~~~~~ 229 (427)
.+.|.+....+.. -...|-.....++-.+..+.|...+...-+. | .+.--|.+.++.+.|.+.|.+.....
T Consensus 332 Rry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 332 RRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred HHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence 9999988765433 3568999999999999999999998877664 2 25556778999999999999988754
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC----CC-C-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----NR-A-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303 (427)
Q Consensus 230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 303 (427)
+. |+...+-+.-.....+.+.+|..+|+..... +. . .-..+++.|..+|.+.+++++|+..|++......+ |
T Consensus 411 P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~ 488 (611)
T KOG1173|consen 411 PS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-D 488 (611)
T ss_pred CC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-c
Confidence 33 7788888888888889999999999877632 11 1 12346888999999999999999999999887655 8
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+|.++.-.|...|+++.|.+.|.+.... .|+..+...++..+
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA 532 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 899999999999999999999999998764 78877766666643
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.02 E-value=7.1e-07 Score=79.67 Aligned_cols=197 Identities=14% Similarity=0.041 Sum_probs=128.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 287 (427)
.|...|+.++|...|++....... +...|+.+...+...|++++|...|++..+.... +..+|..+...+...|++++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~e 150 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYEL 150 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 344556666666666666665443 6778888999999999999999999998876432 45677788888888999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
|.+.|+...+.. |+..........+...++.++|...+.+..... .|+... ..+. ....|+...+ +.++.+.+
T Consensus 151 A~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~ 223 (296)
T PRK11189 151 AQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIV--EFYLGKISEE-TLMERLKA 223 (296)
T ss_pred HHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHH--HHHccCCCHH-HHHHHHHh
Confidence 999999988764 333222222223445678899999997755432 333222 2222 2335555444 34444442
Q ss_pred C---CC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 045814 368 K---GY--G-ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414 (427)
Q Consensus 368 ~---~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 414 (427)
. .. . .....|..+...+...|++++|...|++..+.++ ||..-+..
T Consensus 224 ~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~ 275 (296)
T PRK11189 224 GATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRY 275 (296)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHH
Confidence 2 11 1 1235788888999999999999999999887643 35544444
No 72
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.98 E-value=1.2e-05 Score=74.95 Aligned_cols=100 Identities=4% Similarity=0.029 Sum_probs=51.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----------CCCC
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKER----------GYVP 302 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----------~~~p 302 (427)
.|..+...|-..|+++.|..+|++..+-..+-- ..+|..-...-.+..+++.|.++.++.... |-.|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 455566666667777777777776655432211 123444444445556666666666554321 0000
Q ss_pred -------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045814 303 -------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335 (427)
Q Consensus 303 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 335 (427)
+...|...++.--..|-++....+|+.+.+..+
T Consensus 469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 223344444444455566666666666655543
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=2.4e-05 Score=72.33 Aligned_cols=363 Identities=15% Similarity=0.122 Sum_probs=214.5
Q ss_pred cccccHHHHHHHHHHHhcCCCcchhhhhhhCCCCCCCChHHHHHH--HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHH
Q 045814 35 ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREF--LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL 112 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 112 (427)
..+..|+++++.+.+++...|+-..++. ..+ +-..+.++.|+.+++.-. +..-+..-+---
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~--------------cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEK 85 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIR--------------CKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEK 85 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHh--------------hhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHH
Confidence 4456677778877777766554333322 112 224567777876655431 111111111111
Q ss_pred HHHHHHcCChHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--------------------
Q 045814 113 FDSLVEARAFKVAMDFLDSTGFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG-------------------- 171 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p-------------------- 171 (427)
.-+..+.+..++|+..++ +..++ ..+...-.+.+-+.|++++|+++|+.+.+.+..-
T Consensus 86 AYc~Yrlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~ 163 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL 163 (652)
T ss_pred HHHHHHcccHHHHHHHHh--cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence 223347888899988888 33333 3366666777888899999999998875443210
Q ss_pred -------CHhhHHHHHH---HHHHcCChhHHHHHHHHHHhcc-----------------------hhHHHHHhcCChhHH
Q 045814 172 -------SIKTWNSALL---GCIKIDRTDLVWKLYHDLIESG-----------------------YLIQAFCNDGKVSEG 218 (427)
Q Consensus 172 -------~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-----------------------~l~~~~~~~g~~~~a 218 (427)
...+|..+.+ .++..|++..|+++++...+.+ -+..++-..|+.++|
T Consensus 164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 1224444443 4567899999999998883321 167778889999999
Q ss_pred HHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChhH--HHHHH------------HHH--------------------
Q 045814 219 YELLRQVLEDGLVPENT----AFNKLISRFCEKKNFGR--VSELL------------HTM-------------------- 260 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~--a~~~~------------~~m-------------------- 260 (427)
.+++...+..... |.. .-|.|+.. ..-.++-+ ++..+ ..+
T Consensus 244 ~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN 321 (652)
T ss_pred HHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999998877543 322 22222211 11111100 00000 000
Q ss_pred --------hhC--CCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 261 --------VAR--NRAPDNFTYEEVINGLCK--SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 261 --------~~~--~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
... +..| ...+.+++..+.+ ...+.++..++...-+....-...+.-.+++.....|+++.|..++.
T Consensus 322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 000 1122 2333444433322 22466677777666554333234456667788889999999999999
Q ss_pred --------HHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCCh----hhHHHHHHHHHhcCCHHHHH
Q 045814 329 --------EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETT----VTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 329 --------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~----~~~~~li~~~~~~g~~~~A~ 394 (427)
...+.+..|- +...++..+.+.++-+.|..++.+.... .-.+.. .++..+...-.+.|+.++|.
T Consensus 401 ~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 401 LFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred HHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 6666566664 4455666777888877788777776532 011122 23333344445789999999
Q ss_pred HHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 045814 395 HLFEEMAQKGIFRDVITYNTLIQGYCKE 422 (427)
Q Consensus 395 ~~~~~m~~~g~~p~~~~~~~li~~~~~~ 422 (427)
.+++++.+.. ++|..+...++.+|++.
T Consensus 479 s~leel~k~n-~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 479 SLLEELVKFN-PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence 9999999853 56889999999999875
No 74
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.93 E-value=1.1e-05 Score=74.57 Aligned_cols=198 Identities=8% Similarity=-0.010 Sum_probs=124.1
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCH--hhHHHHHHHHHh
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDN--FTYEEVINGLCK 281 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~ 281 (427)
+...+...|++++|...+++....... +...+..+...+...|++++|...+++...... .++. ..|..+...+..
T Consensus 120 ~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 120 LAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 344567788888888888888876543 567788888999999999999999998877543 2232 345567888999
Q ss_pred cCChHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHccCCHHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHhhcC
Q 045814 282 SRKRLEAYRVFNDLKERGY-VPDTVMY-T--TVIHGLCKMGWLGDARKM--WFEMIHKGL--LPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g 353 (427)
.|++++|..++++...... .+..... + .++.-+...|..+.+... +........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 9999999999999864422 1111111 1 223333444543333332 211111111 111122235667788899
Q ss_pred CHHHHHHHHHHHHHCCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 354 NLEEAKRLHKEMLDKGYGE--------TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+.+.|..+++.+....... .....-...-++...|++++|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999887642210 1112222223456889999999999887764
No 75
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.6e-05 Score=70.32 Aligned_cols=272 Identities=14% Similarity=0.034 Sum_probs=142.8
Q ss_pred HHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814 90 IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPN-SLELYIQCLCESGLIEEAFCAFSKLKEM 167 (427)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~ 167 (427)
.+.|-.+....-++-|+.....+.+.+...|+.++|...|++. ...|... ........+.+.|+.+....+...+...
T Consensus 216 ~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~ 295 (564)
T KOG1174|consen 216 SQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK 295 (564)
T ss_pred hhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence 3334444334445666777777777777777777777777662 2233322 1222223334556666655555555433
Q ss_pred CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch------h--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045814 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------L--IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239 (427)
Q Consensus 168 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 239 (427)
.- -+...|..-........++..|+.+-++.++.+. + ...+...|+.++|.-.|+......+ .+...|..
T Consensus 296 ~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~G 373 (564)
T KOG1174|consen 296 VK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRG 373 (564)
T ss_pred hh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHH
Confidence 11 1233344444444455566666666666555421 2 2234455666666666666555432 25556666
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHc
Q 045814 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI-NGLC-KSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCK 316 (427)
Q Consensus 240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~ 316 (427)
|+..|...|+..+|...-...... +..+..+.+.+. ..+. ...--++|.+++++..+. .|+ ....+.+...|..
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~ 450 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQV 450 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHh
Confidence 666666666666665554443332 122333333331 2221 222335566666655443 333 2244555555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.|..+.++.++++.... .||....+.|.+.+...+.+++|.+.|......
T Consensus 451 Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 451 EGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred hCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 66666666666666553 566666666666666666666666666665543
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=1.9e-06 Score=76.89 Aligned_cols=216 Identities=13% Similarity=0.006 Sum_probs=130.5
Q ss_pred cCChHHHHHHHHhc----CCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHH
Q 045814 119 ARAFKVAMDFLDST----GFSPN--PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV 192 (427)
Q Consensus 119 ~~~~~~a~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a 192 (427)
.+..+.++..+.+. ...|+ ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 34555555555442 23333 345777777888888888888888888876543 567777766666666665555
Q ss_pred HHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH
Q 045814 193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY 272 (427)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 272 (427)
...|+ +..+.... +..+|..+..++...|++++|.+.++...+... +....
T Consensus 118 ~~~~~--------------------------~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~ 168 (296)
T PRK11189 118 YEAFD--------------------------SVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYR 168 (296)
T ss_pred HHHHH--------------------------HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHH
Confidence 55544 44443322 456677777778888888888888888877643 22211
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CC--CC-CHHHHHHHH
Q 045814 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK---GL--LP-NEYTYNSMI 346 (427)
Q Consensus 273 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~li 346 (427)
......+...+++++|...|.+..... .|+...+ . ......|+..++ ..+..+.+. .+ .| ...+|..+.
T Consensus 169 ~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg 243 (296)
T PRK11189 169 ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLA 243 (296)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 222223345677888888886654332 2232222 2 222234555443 244444322 11 11 234677888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCC
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDKG 369 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~~ 369 (427)
..+.+.|++++|...|++..+.+
T Consensus 244 ~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 244 KYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 88888899999999998888764
No 77
>PF12854 PPR_1: PPR repeat
Probab=98.86 E-value=3.5e-09 Score=59.82 Aligned_cols=32 Identities=59% Similarity=1.007 Sum_probs=21.7
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045814 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400 (427)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (427)
|+.||..+|++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56666666666666666666666666666666
No 78
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.82 E-value=0.00012 Score=68.68 Aligned_cols=259 Identities=13% Similarity=0.094 Sum_probs=153.5
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCcCHhhHHHHHH------HHHHcCChhHHHHHHHHHHhc--------c
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALL------GCIKIDRTDLVWKLYHDLIES--------G 203 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~--------~ 203 (427)
..|..+..++.-.|+...|..+.+...+.. -.|+...|.-... ...+.|..+.|.+.+...... -
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 345566666667788888888888777654 2455555543332 345677777777666544333 2
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCChhHHH-HHHHHHhh-------------------
Q 045814 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-SRFCEKKNFGRVS-ELLHTMVA------------------- 262 (427)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~------------------- 262 (427)
.-...+.+.+++++|..++..++... ||...|...+ .++.+-.+..++. .+|....+
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e 301 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE 301 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence 35667788999999999999998864 5555555444 4443322322222 44443322
Q ss_pred ---------------CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----hCC----------CCCChh--hHHHHH
Q 045814 263 ---------------RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK----ERG----------YVPDTV--MYTTVI 311 (427)
Q Consensus 263 ---------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~----------~~p~~~--~~~~li 311 (427)
.|+++ ++..+...|-...+.+-.+++...+. ..| -.|++. ++-.++
T Consensus 302 el~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la 378 (700)
T KOG1156|consen 302 ELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA 378 (700)
T ss_pred hhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence 22211 12222222211111111111111111 111 134444 344567
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 045814 312 HGLCKMGWLGDARKMWFEMIHKGLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 390 (427)
+.+-..|+++.|..+++..... .|+. ..|..=.+.+...|++++|..++++..+.+. +|...=..-..-..++++.
T Consensus 379 qh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i 455 (700)
T KOG1156|consen 379 QHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEI 455 (700)
T ss_pred HHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcccc
Confidence 7788889999999999888765 5553 3444445778888999999999998887643 3555444556666788899
Q ss_pred HHHHHHHHHHHHCCC
Q 045814 391 DEAYHLFEEMAQKGI 405 (427)
Q Consensus 391 ~~A~~~~~~m~~~g~ 405 (427)
++|.++.....+.|.
T Consensus 456 ~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 456 EEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHhhhccc
Confidence 999998888887764
No 79
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.80 E-value=2.1e-07 Score=81.95 Aligned_cols=249 Identities=14% Similarity=0.110 Sum_probs=144.3
Q ss_pred HHHHHcCChHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhH
Q 045814 114 DSLVEARAFKVAMDFLDSTGFSP--NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191 (427)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 191 (427)
+-+.-.|++..++.-.+..+..+ +......+.+++...|+.+.++ .++.... .|.......+...+..
T Consensus 9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~------ 78 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS------ 78 (290)
T ss_dssp HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT------
T ss_pred HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC------
Confidence 33445677777775444222222 2334556677777777766443 3333322 4444443332222211
Q ss_pred HHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270 (427)
Q Consensus 192 a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 270 (427)
.++-+.++.-+++........ +..........+...|++++|+++++.- .+..
T Consensus 79 --------------------~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE 132 (290)
T PF04733_consen 79 --------------------PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLE 132 (290)
T ss_dssp --------------------STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHH
T ss_pred --------------------ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------Cccc
Confidence 122233333333333222222 2222223334566678888888887642 2456
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 346 (427)
.....+..|.+.++++.|.+.++.|.+.+ .| .+...+..++.. ...+.+|..+|+++... ..++..+.+.+.
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A 208 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA 208 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence 66777888888999999999998887652 23 344445554443 33688899999987654 556778888888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT-DEAYHLFEEMAQK 403 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~ 403 (427)
.++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+++.++...
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888889999999988887765433 566777777777777877 6677788887764
No 80
>PF12854 PPR_1: PPR repeat
Probab=98.78 E-value=8.4e-09 Score=58.26 Aligned_cols=27 Identities=41% Similarity=0.797 Sum_probs=10.0
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
||..||+++|.+|++.|++++|.++|+
T Consensus 5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 5 PDVVTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 333333333333333333333333333
No 81
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.78 E-value=5.2e-07 Score=79.51 Aligned_cols=248 Identities=14% Similarity=0.151 Sum_probs=148.6
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814 82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 161 (427)
..|++..++.-.+ . ....-..+.....-+.+++...|+++.++.-+.... .|.......+...+...++-+.+..-+
T Consensus 13 y~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l 89 (290)
T PF04733_consen 13 YLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEEL 89 (290)
T ss_dssp CTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred HhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHH
Confidence 3567777765554 2 211112234556667788899999887776665544 666666655555554434455555554
Q ss_pred HHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045814 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241 (427)
Q Consensus 162 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 241 (427)
++....+..++..++. ++.+ ..+...|++++|++++... .+.......+
T Consensus 90 ~~~~~~~~~~~~~~~~-~~~A------------------------~i~~~~~~~~~AL~~l~~~------~~lE~~al~V 138 (290)
T PF04733_consen 90 KELLADQAGESNEIVQ-LLAA------------------------TILFHEGDYEEALKLLHKG------GSLELLALAV 138 (290)
T ss_dssp HHCCCTS---CHHHHH-HHHH------------------------HHHCCCCHHHHHHCCCTTT------TCHHHHHHHH
T ss_pred HHHHHhccccccHHHH-HHHH------------------------HHHHHcCCHHHHHHHHHcc------CcccHHHHHH
Confidence 4443332222222222 2211 2234455566665555321 2556667778
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 045814 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL----CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (427)
..|.+.++++.|.+.++.|.+.+ .| .+...+..++ ...+++.+|..+|+++.+. ..+++.+.+.+..++...
T Consensus 139 qi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 139 QILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence 88888899999999998887663 23 3333344433 3344688899999998654 445777888888888889
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHC
Q 045814 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL-EEAKRLHKEMLDK 368 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 368 (427)
|++++|..++.+....+.. +..+...++.+....|+. +.+.+++.++...
T Consensus 215 ~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 9999999998888765433 566777777777777776 6677888887764
No 82
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=4.9e-05 Score=67.38 Aligned_cols=263 Identities=11% Similarity=-0.049 Sum_probs=185.9
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------h
Q 045814 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------Y 204 (427)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~ 204 (427)
-.+-|+.....+..++...|+.++|...|+.....++. +........-.+...|+++....+...+.... .
T Consensus 227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV 305 (564)
T KOG1174|consen 227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV 305 (564)
T ss_pred cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence 33456667888889999999999999999888765322 22223333344567777777777776665442 1
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
-.......++++.|+.+-++.++.... +...|-.-...+...++.++|.-.|....... +-+...|.-|+..|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence 233445677888888888888775543 55566665677788899999988888876653 2367889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHc-cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVI-HGLCK-MGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRL 361 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~ 361 (427)
+.+|.-.-+...+.- .-+..+.+.+. ..|.- -.--++|.+++++-.+. .|+ ....+.+...|...|..+.+..+
T Consensus 384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence 999877666544321 11444444332 22221 22247888888887765 455 34566777788899999999999
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 362 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
++..... .||....+.|.+.+...+.+++|.+.|......
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9998864 679999999999999999999999999888764
No 83
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=5.8e-06 Score=69.97 Aligned_cols=311 Identities=14% Similarity=0.139 Sum_probs=188.8
Q ss_pred hcCChHHHHHHHHHHhhcCCCCC-CHhhHHHHHHHHHHcCChHHHHHHHHhcCC-CCCHHhHHHH-HHHHHhcCChhHHH
Q 045814 82 QQNNVLLSIRFFQWLHSHYGFSP-DLVSCNVLFDSLVEARAFKVAMDFLDSTGF-SPNPNSLELY-IQCLCESGLIEEAF 158 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l-i~~~~~~~~~~~A~ 158 (427)
+..++..|++++....+. .| +....+.+...|....++..|-+.+++.+. -|...-|... .+.+-+.+.+..|+
T Consensus 22 ~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL 98 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL 98 (459)
T ss_pred HHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence 345566666666655433 34 667777777777788888888888887543 4555555443 45666778888888
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHH--HHHcCChhHHHHHHHHHHhcch------hHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814 159 CAFSKLKEMGVFGSIKTWNSALLG--CIKIDRTDLVWKLYHDLIESGY------LIQAFCNDGKVSEGYELLRQVLEDGL 230 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~------l~~~~~~~g~~~~a~~~~~~~~~~~~ 230 (427)
++...|... |+...-..-+.+ ....+++..+..+.++....|. ......+.|++++|++-|....+-+-
T Consensus 99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG 175 (459)
T KOG4340|consen 99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG 175 (459)
T ss_pred HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence 888777642 222222222222 2246677777777777775431 23334578899999999998887544
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-------------CCHh--------hHHHHHH-------HHHhc
Q 045814 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-------------PDNF--------TYEEVIN-------GLCKS 282 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~~--------~~~~ll~-------~~~~~ 282 (427)
-.....||..+.. .+.|++..|.+...+++++|++ ||+. .-+.++. .+.+.
T Consensus 176 yqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~ 254 (459)
T KOG4340|consen 176 YQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL 254 (459)
T ss_pred CCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence 4456778876644 4568889999999998887652 1221 1122222 34577
Q ss_pred CChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814 283 RKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361 (427)
Q Consensus 283 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 361 (427)
|+++.|.+-+..|.-+ .-..|++|...+.-.-. .+++.+..+-+.-+...+.. ...||..++-.||+..-++-|-.+
T Consensus 255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADv 332 (459)
T KOG4340|consen 255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADV 332 (459)
T ss_pred ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHH
Confidence 8888888888888432 22345665544433222 34455555555555555443 346888888888888888888887
Q ss_pred HHHHHHCCCC-CChhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 045814 362 HKEMLDKGYG-ETTVTYNTLIAGLC-LHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 362 ~~~m~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~ 402 (427)
+.+-...-.. .+...|+ |++++. ..-..++|++-++.+..
T Consensus 333 LAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 333 LAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 7653322111 2333443 334443 34567777777666543
No 84
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.74 E-value=0.00014 Score=66.72 Aligned_cols=172 Identities=9% Similarity=0.074 Sum_probs=122.1
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
.+....+++++...-..--..+|...|+.-.+..-+..|..+|.+..+.+..+ ++..+++++.-||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 44444555555443222223577888888888888999999999998887776 77788888888875 67789999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 045814 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK--- 403 (427)
Q Consensus 329 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--- 403 (427)
--.+. ..-+..-....+..+...++-..+..+|++....++.|| ..+|..+|+--..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76554 122333445677888888999999999999998866655 478999999889999999999988877654
Q ss_pred CCCCCHhHHHHHHHHHHhcC
Q 045814 404 GIFRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 404 g~~p~~~~~~~li~~~~~~g 423 (427)
...|...+-..+++.|.-.+
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d 524 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILD 524 (656)
T ss_pred hhcCCCChHHHHHHHHhhcc
Confidence 12333344455555554443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.73 E-value=0.00012 Score=67.69 Aligned_cols=191 Identities=10% Similarity=-0.012 Sum_probs=108.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHc
Q 045814 178 SALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGL-VPE--NTAFNKLISRFCE 246 (427)
Q Consensus 178 ~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~ 246 (427)
.+...+...|++++|...+++..+.+ .+...+...|++++|...+++...... .++ ...|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 34445556666666666666655542 245566667777777777777665432 122 2345567888999
Q ss_pred cCChhHHHHHHHHHhhCCC-CCCHhhH-H--HHHHHHHhcCChHHHHHH--H-HHHHhCCC-CCChhhHHHHHHHHHccC
Q 045814 247 KKNFGRVSELLHTMVARNR-APDNFTY-E--EVINGLCKSRKRLEAYRV--F-NDLKERGY-VPDTVMYTTVIHGLCKMG 318 (427)
Q Consensus 247 ~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g 318 (427)
.|++++|..++++...... .+..... + .++.-+...|....+.+. . ........ ............++...|
T Consensus 199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 278 (355)
T cd05804 199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG 278 (355)
T ss_pred CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence 9999999999999864432 1112111 1 233333444543333332 2 21111100 111122225667778899
Q ss_pred CHHHHHHHHHHHHHcCCCC---C---HHHHHHHH--HHHhhcCCHHHHHHHHHHHHHC
Q 045814 319 WLGDARKMWFEMIHKGLLP---N---EYTYNSMI--HGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 319 ~~~~a~~~~~~m~~~~~~p---~---~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+.++|..+++.+......+ . ..+-..++ -++...|+.++|.+.+......
T Consensus 279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987643221 1 11112222 3456889999999999887754
No 86
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.73 E-value=3.1e-05 Score=72.33 Aligned_cols=299 Identities=9% Similarity=0.096 Sum_probs=196.1
Q ss_pred hHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh----cCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814 86 VLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS----TGFSPNPNSLELYIQCLCESGLIEEAFCAF 161 (427)
Q Consensus 86 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 161 (427)
.+.++.+.+.| +..|-..+..+.++|++......|+. +++.-....|...+......+-++.+.++|
T Consensus 91 ~er~lv~mHkm---------pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy 161 (835)
T KOG2047|consen 91 FERCLVFMHKM---------PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY 161 (835)
T ss_pred HHHHHHHHhcC---------CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence 34555555555 34566667777888988888888875 344445668999999999999999999999
Q ss_pred HHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHh------------------cCChhHHHHHHH
Q 045814 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN------------------DGKVSEGYELLR 223 (427)
Q Consensus 162 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~------------------~g~~~~a~~~~~ 223 (427)
.+..+. ++..-+--+..+++.++.++|.+.+..++........+.+ .+.--....+++
T Consensus 162 rRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR 237 (835)
T KOG2047|consen 162 RRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR 237 (835)
T ss_pred HHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence 998874 4445777788889999999999999888766332222211 111122233333
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--------------------
Q 045814 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR-------------------- 283 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-------------------- 283 (427)
.+...-...-...|++|.+.|.+.|.+++|.++|++.... ..++.-|+.+.++|..-.
T Consensus 238 ~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed 315 (835)
T KOG2047|consen 238 GGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED 315 (835)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence 3332211112347899999999999999999999988776 334556666666665421
Q ss_pred --ChHHHHHHHHHHHhCCC-----------CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 045814 284 --KRLEAYRVFNDLKERGY-----------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN------EYTYNS 344 (427)
Q Consensus 284 --~~~~a~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~ 344 (427)
+++-...-|+.+..... .-++..|..-+. ...|+..+-...|.++.+. +.|. ...|..
T Consensus 316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~ 392 (835)
T KOG2047|consen 316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVE 392 (835)
T ss_pred hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHH
Confidence 11222333333332210 012333333222 2346677888888888765 3332 246788
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+.+.|-..|+++.|..+|++..+...+-- ..+|..-...-.++.+++.|++++++...
T Consensus 393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~ 453 (835)
T KOG2047|consen 393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH 453 (835)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence 88999999999999999999987644311 34566666666788899999999887754
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.70 E-value=3.6e-06 Score=77.47 Aligned_cols=243 Identities=14% Similarity=0.094 Sum_probs=172.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChh
Q 045814 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVS 216 (427)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~ 216 (427)
..-+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+.-+++..+... |.-.|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 34456788888999999888887666 788888888888888888888888888877642 666777888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHccCChhHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCC
Q 045814 217 EGYELLRQVLEDGLVPENTAFNKLI-----------SRFCEKKNFGRVSELLHTMVA-RNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
.|+..|+..+...++ |..+. ..+.....+....++|-++.. .+..+|..+...|.-.|.-.|+
T Consensus 371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 888888877654322 11100 111222223445555555443 3434677788888888889999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHK 363 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~ 363 (427)
+++|...|+.++..... |...||.|...++...+.++|+.-|++.++. +|+ +.....|.-+|...|.+++|.+.|-
T Consensus 446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 99999999998877554 7789999999999999999999999999886 555 3344445667889999999998887
Q ss_pred HHHHC---------CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045814 364 EMLDK---------GYGETTVTYNTLIAGLCLHGRTDEAYHL 396 (427)
Q Consensus 364 ~m~~~---------~~~p~~~~~~~li~~~~~~g~~~~A~~~ 396 (427)
..+.. +..++..+|.+|=.++.-.++.|-+.+.
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 65532 1122345777777777777777644443
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=5.2e-06 Score=70.26 Aligned_cols=290 Identities=13% Similarity=0.100 Sum_probs=190.8
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHhcC-CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH-H
Q 045814 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-FSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS-A 179 (427)
Q Consensus 103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-l 179 (427)
.....-+.+++..+.+..+++.|++++...+ ..| +....+.|..+|-...++..|-..|+.+... .|...-|.. -
T Consensus 7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~ 84 (459)
T KOG4340|consen 7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQ 84 (459)
T ss_pred cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHH
Confidence 3334456777878889999999999998643 234 6778999999999999999999999999774 444444432 2
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcchhHHH--------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 045814 180 LLGCIKIDRTDLVWKLYHDLIESGYLIQA--------FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251 (427)
Q Consensus 180 l~~~~~~~~~~~a~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 251 (427)
...+.+.+.+..|+++...|.....+.+- ....+++..+..++++....| +..+.+.......+.|+++
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 34556778888888888888775433222 224567777777777665433 3345555555567889999
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-------------Chh--------hHHHH
Q 045814 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-------------DTV--------MYTTV 310 (427)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-------------~~~--------~~~~l 310 (427)
+|.+-|+...+-+--.....|+..+..| +.|+++.|++...++.++|++- |+. .-+.+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999998877755433456777766554 6688899999999998888762 111 11122
Q ss_pred HH-------HHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814 311 IH-------GLCKMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382 (427)
Q Consensus 311 i~-------~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 382 (427)
+. .+.+.|+.+.|.+-+-+|.-. ....|+.|...+.-.= -.+++....+-+.-+..... -...||..++-
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl 318 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL 318 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence 22 234567777777777666422 2344666665543221 22345555555555555432 34577888888
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 045814 383 GLCLHGRTDEAYHLFEEM 400 (427)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m 400 (427)
.||++.-++-|-.++-+=
T Consensus 319 lyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 319 LYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHhhhHHHhHHHHHHhhC
Confidence 888888888887777553
No 89
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=3.1e-06 Score=79.90 Aligned_cols=217 Identities=14% Similarity=0.097 Sum_probs=171.5
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 045814 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV 253 (427)
Q Consensus 174 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 253 (427)
..-..+...+...|-...|..+|+++..+.-.+..|+..|+..+|..+..+..+ -+||...|..+.+.....--+++|
T Consensus 399 q~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka 476 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA 476 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence 344556677888999999999999999999999999999999999998888877 457888888888887777778888
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.++.+..-.+ .-..+.....+.++++++.+.|+.-.+...- -..+|-.+..+..+.++++.|.+.|......
T Consensus 477 wElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL 548 (777)
T KOG1128|consen 477 WELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL 548 (777)
T ss_pred HHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence 8888754332 1111112223478999999999887665432 5568888888888999999999999888775
Q ss_pred CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 334 GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 334 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.|| ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++.+.
T Consensus 549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 444 6689999999999999999999999999887 346777888888888999999999999887653
No 90
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2.1e-06 Score=81.00 Aligned_cols=221 Identities=14% Similarity=0.100 Sum_probs=181.3
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 045814 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180 (427)
Q Consensus 101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 180 (427)
+++|--..-..+.+.+...|-...|..++++. ..|.-+|.+|+..|+..+|..+...-.+ -+||...|..+.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG 464 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG 464 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence 34455555566778888999999999999874 4688889999999999999999887777 378999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhc--chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814 181 LGCIKIDRTDLVWKLYHDLIES--GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258 (427)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 258 (427)
+......-++.|.++++..-.. -.+.......++++++.+.|+.-.....- -..+|-.+-.+..+.++++.|.+.|.
T Consensus 465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence 9988888889999999876654 22333345579999999999987765433 55688888888899999999999999
Q ss_pred HHhhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 259 TMVARNRAPD-NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 259 ~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.-... .|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++...
T Consensus 544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 88776 444 578999999999999999999999999988743 6667878888889999999999999988654
No 91
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.65 E-value=0.00043 Score=65.07 Aligned_cols=60 Identities=18% Similarity=0.129 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+-.++..|-+.|+++.|..+++...++ .|+ +..|..=.+.+...|++++|..++++..+.
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el 434 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL 434 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence 344566777788888888888877765 233 334444457777888888888888877664
No 92
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.64 E-value=0.00045 Score=66.19 Aligned_cols=323 Identities=14% Similarity=0.056 Sum_probs=181.6
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH-hhHH
Q 045814 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI-KTWN 177 (427)
Q Consensus 101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~ 177 (427)
.+.-|...|-.+.-++...|+++.+.+.|++. +.--....|+.+-..|...|.-..|..+.++-......|+. ..+-
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 45667888888888888888888888888872 22234567778888888888877788777766544322332 2222
Q ss_pred HHHHHHH-HcCChhHHHHHHHHHHhc--------------------------------------------------c---
Q 045814 178 SALLGCI-KIDRTDLVWKLYHDLIES--------------------------------------------------G--- 203 (427)
Q Consensus 178 ~ll~~~~-~~~~~~~a~~~~~~~~~~--------------------------------------------------~--- 203 (427)
..-..|. +.+.+++++.+-.++++. +
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d 477 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD 477 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2222332 345555555555555542 0
Q ss_pred -----hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-CCC-----------
Q 045814 204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-NRA----------- 266 (427)
Q Consensus 204 -----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~----------- 266 (427)
.+.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |..
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 033335556667777777777776655556677777777777777777777776654432 110
Q ss_pred -------CCHhhHHHHHHHHHh-----------------------cCChHHHHHHHHHHH--------hCC---------
Q 045814 267 -------PDNFTYEEVINGLCK-----------------------SRKRLEAYRVFNDLK--------ERG--------- 299 (427)
Q Consensus 267 -------~~~~~~~~ll~~~~~-----------------------~~~~~~a~~~~~~m~--------~~~--------- 299 (427)
.-..|...++...-. .++..+|......+. ..|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 001111111111110 001111111111100 000
Q ss_pred CC--CC------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 045814 300 YV--PD------TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371 (427)
Q Consensus 300 ~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 371 (427)
.. |+ ...|......+.+.+..++|...+.+..... .-....|......+...|.+.+|.+.|......+..
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~ 716 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD 716 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence 00 11 1122333444555566666665555554432 223344555555666677777887777777654321
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 372 ETTVTYNTLIAGLCLHGRTDEAYH--LFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 372 p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
++.+..++...+.+.|+..-|.. ++.++.+.+.. +...|..+-..+-+.|+.+
T Consensus 717 -hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 717 -HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred -CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchH
Confidence 45677777888888887776666 78888776544 6778888888888877754
No 93
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.63 E-value=1.2e-05 Score=74.19 Aligned_cols=239 Identities=11% Similarity=0.115 Sum_probs=179.5
Q ss_pred HHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHH
Q 045814 116 LVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193 (427)
Q Consensus 116 ~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 193 (427)
+.+.|++.+|.-.|+. ....| +...|-.|......+++-..|+..+.+..+.... +....-.|.-.|...|.-..|.
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence 4578889999888886 33344 5789999999999999999999999999987555 6778888888999999999999
Q ss_pred HHHHHHHhcch---hH------------HHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814 194 KLYHDLIESGY---LI------------QAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELL 257 (427)
Q Consensus 194 ~~~~~~~~~~~---l~------------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 257 (427)
+.++.-+.... .+ ..+..........++|-++. ..+..+|..++..|.-.|.-.|++++|.+.|
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 99998876532 11 12222333455666666665 4555578888889988999999999999999
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHc---
Q 045814 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHK--- 333 (427)
Q Consensus 258 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--- 333 (427)
+..+...+ -|...||.|...++...+.++|+..|++.++. .|+ +.+...|.-+|...|.+++|...|-..+..
T Consensus 454 ~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 454 EAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99988743 36789999999999999999999999999887 454 334455777789999999999988765432
Q ss_pred C------CCCCHHHHHHHHHHHhhcCCHHHH
Q 045814 334 G------LLPNEYTYNSMIHGYCRIDNLEEA 358 (427)
Q Consensus 334 ~------~~p~~~~~~~li~~~~~~g~~~~a 358 (427)
+ ..++...|..|=.++.-.++.|.+
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 1 112334555554455555555433
No 94
>PLN02789 farnesyltranstransferase
Probab=98.62 E-value=6.6e-05 Score=67.22 Aligned_cols=215 Identities=10% Similarity=0.076 Sum_probs=114.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH-HhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP-NSLELYIQCLCESG-LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~-~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 184 (427)
++..+-..+...++.++|+.+..+ ....|+. .+|+.-..++...| .+++++..++++.+...+ +..+|+.-...+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 444444455556677777777665 3334433 34555555555555 466777777777665444 4445543332222
Q ss_pred HcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814 185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264 (427)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 264 (427)
+.|.. ..++++.+++++.+.... +..+|+....++...|+++++++.++++++.+
T Consensus 118 ~l~~~------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 118 KLGPD------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HcCch------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 22210 113445555566555443 66667766666667777777777777777765
Q ss_pred CCCCHhhHHHHHHHHHhc---CCh----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHHc
Q 045814 265 RAPDNFTYEEVINGLCKS---RKR----LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----GWLGDARKMWFEMIHK 333 (427)
Q Consensus 265 ~~~~~~~~~~ll~~~~~~---~~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~ 333 (427)
+. |...|+.....+.+. |.. ++......++...... |...|+-+...+... ++..+|...+.+....
T Consensus 173 ~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 173 VR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK 250 (320)
T ss_pred CC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence 43 445555544444333 222 3445555555554333 555666666666552 2334566666665543
Q ss_pred CCCCCHHHHHHHHHHHhh
Q 045814 334 GLLPNEYTYNSMIHGYCR 351 (427)
Q Consensus 334 ~~~p~~~~~~~li~~~~~ 351 (427)
++ .+......|+..|+.
T Consensus 251 ~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 251 DS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cC-CcHHHHHHHHHHHHh
Confidence 32 244555556666554
No 95
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=0.00014 Score=71.45 Aligned_cols=277 Identities=13% Similarity=0.102 Sum_probs=182.1
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 045814 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN-----SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS 178 (427)
Q Consensus 104 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 178 (427)
.|+...+..+.++...+-+.+.++++++.-..|++. .-|.||-...+. +.....+..+++...... .
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-------~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-------D 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-------h
Confidence 456666666777778888888888888754444433 334444444333 345566666666543211 2
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcchhHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN-DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257 (427)
Q Consensus 179 ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 257 (427)
+...+...+-+++|..+|+..-..+..+..+.. -+..+.|.+.-++.. .+..|+.+..+-.+.|...+|++-|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 334455666777888888776665555554443 456666666554432 3457888888888888888887766
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 045814 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337 (427)
Q Consensus 258 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 337 (427)
-+. -|...|..+++...+.|.+++-.+.+....+..-+|... +.+|-+|++.+++.+.++++ .-|
T Consensus 1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gp 1192 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGP 1192 (1666)
T ss_pred Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCC
Confidence 432 256678888888888888888888888777776555544 56888888888887766554 236
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 045814 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417 (427)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 417 (427)
|..-...+.+-|...|.++.|.-+|.. +..|..|...+...|+++.|..--++.- +..||..+-.
T Consensus 1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCF 1257 (1666)
T ss_pred CchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHH
Confidence 666677777777777888777766653 3446777777777788777776554433 4567777766
Q ss_pred HHHhcCC
Q 045814 418 GYCKEGK 424 (427)
Q Consensus 418 ~~~~~g~ 424 (427)
+|...+.
T Consensus 1258 aCvd~~E 1264 (1666)
T KOG0985|consen 1258 ACVDKEE 1264 (1666)
T ss_pred HHhchhh
Confidence 6665543
No 96
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.61 E-value=0.00031 Score=61.25 Aligned_cols=315 Identities=10% Similarity=0.020 Sum_probs=167.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChh
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 155 (427)
+....-+.++++.|+..+..+... -.++...+-.|.-...-.|.+.+|..+..+.+ .++-.-..|+..-.+.++-+
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk 138 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEK 138 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHH
Confidence 333444678999999999988653 35666666666666667788999988887753 23444455556666667766
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHHHHHHH
Q 045814 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLE 227 (427)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~ 227 (427)
+-..+.+.+... ..---+|........++.+|.++|+.+...+. +.-.|.+..-++-+.++++-..+
T Consensus 139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 666665555432 22233344444445567888888888777642 45566677777777777776665
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH--------------hhCCC------------CCC-----HhhHHHHH
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--------------VARNR------------APD-----NFTYEEVI 276 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------------~~~~~------------~~~-----~~~~~~ll 276 (427)
.-.. ++...|.......+.-.-..|++-.+.+ .+++. -|. ...--.++
T Consensus 214 q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~ 292 (557)
T KOG3785|consen 214 QFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI 292 (557)
T ss_pred hCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence 4222 3344444433333321111111111111 11110 000 01111233
Q ss_pred HHHHhcCChHHHHHHHHHHHhC--------------------------------------CCCCChh-hHHHHHHHHHcc
Q 045814 277 NGLCKSRKRLEAYRVFNDLKER--------------------------------------GYVPDTV-MYTTVIHGLCKM 317 (427)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~--------------------------------------~~~p~~~-~~~~li~~~~~~ 317 (427)
-.|.+.++..+|..+..++.-. +..-|+. -=.++.+++.-.
T Consensus 293 iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~ 372 (557)
T KOG3785|consen 293 IYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS 372 (557)
T ss_pred eeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence 3456677777776666554311 1111100 011122222222
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCCHHHHHHH
Q 045814 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL-IAGLCLHGRTDEAYHL 396 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~ 396 (427)
-++++.+.+++.+...=..-|...| .+.++++..|++.+|+++|-.+....++ |..+|.++ .++|.+.++++-|+++
T Consensus 373 ~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~ 450 (557)
T KOG3785|consen 373 FQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM 450 (557)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence 2333333333333333222222222 3456677778888888888777655444 55555544 4677888888888777
Q ss_pred HHHHHH
Q 045814 397 FEEMAQ 402 (427)
Q Consensus 397 ~~~m~~ 402 (427)
+-++..
T Consensus 451 ~lk~~t 456 (557)
T KOG3785|consen 451 MLKTNT 456 (557)
T ss_pred HHhcCC
Confidence 665543
No 97
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.61 E-value=3.4e-05 Score=78.07 Aligned_cols=232 Identities=12% Similarity=0.062 Sum_probs=139.9
Q ss_pred CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCc---CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHH
Q 045814 135 SPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEM-GVFG---SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF 209 (427)
Q Consensus 135 ~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~ 209 (427)
.|| ...|-..|....+.++.++|.+++++.... ++.- -...|.++++.-..-|.-+...++|+++.+..
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------ 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------ 1527 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc------
Confidence 344 345777777777788888888888777643 1111 12345555555555555555555555444321
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 289 (427)
. .-..|..|...|.+.++.++|.++++.|.+.- ......|...+..+.+..+-+.|.
T Consensus 1528 ---------------------d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1528 ---------------------D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred ---------------------c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHH
Confidence 1 22356667777777777777777777777652 245567777777777777777777
Q ss_pred HHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 290 RVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 290 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.++.+..+.-.+- -.....-.++.-.+.|+.+.+..+|+.....-.+ -...|+.+++.-.++|+.+.++.+|++....
T Consensus 1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7777766542211 1223334445555677777777777777665322 3456777777777777777777777777776
Q ss_pred CCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 045814 369 GYGET--TVTYNTLIAGLCLHGRTDEAYHL 396 (427)
Q Consensus 369 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 396 (427)
++.|- ...|...+..--..|+-..+..+
T Consensus 1664 ~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1664 KLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 66554 24566666655566665544433
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.61 E-value=0.00022 Score=74.53 Aligned_cols=294 Identities=10% Similarity=-0.059 Sum_probs=188.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHhc----CC-----CCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH----h
Q 045814 110 NVLFDSLVEARAFKVAMDFLDST----GF-----SPN--PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI----K 174 (427)
Q Consensus 110 ~~ll~~~~~~~~~~~a~~~~~~~----~~-----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~ 174 (427)
......+...|+++++..++... .. .+. ......+...+...|++++|...++.....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 33444556778888888877642 11 111 112233345566789999999999887653111121 3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhc--------------chhHHHHHhcCChhHHHHHHHHHHHC----CCC--C-C
Q 045814 175 TWNSALLGCIKIDRTDLVWKLYHDLIES--------------GYLIQAFCNDGKVSEGYELLRQVLED----GLV--P-E 233 (427)
Q Consensus 175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~ 233 (427)
..+.+...+...|++++|...+++.... ..+...+...|++++|...+++.... +.. + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 4455666778899999999998887643 12456677899999999988876542 211 1 2
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCC--CCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CChhhH-
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARN--RAP--DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMY- 307 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~- 307 (427)
...+..+...+...|++++|...+.+..... ..+ ....+..+...+...|++++|.+.+......... .....+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 2334455566777899999999888765531 111 2334455666778899999999998887542111 011111
Q ss_pred ----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hh
Q 045814 308 ----TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET-TV 375 (427)
Q Consensus 308 ----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~ 375 (427)
...+..+...|+.+.|...+............ ..+..+..++...|+.++|...+++.... |..++ ..
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11224445678899999887775543211111 11345667788899999999999987653 32222 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+...+..++.+.|+.++|...+.+..+.
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666777888999999999999988775
No 99
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.60 E-value=3.8e-05 Score=77.71 Aligned_cols=225 Identities=12% Similarity=0.065 Sum_probs=168.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 045814 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251 (427)
Q Consensus 172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 251 (427)
+...|-..|......++.+.|.++.++++.. =++.+-.+ -...|.++++.-..-|.-+
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t----------IN~REeeE------------KLNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT----------INFREEEE------------KLNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----------CCcchhHH------------HHHHHHHHHhHHHhhCcHH
Confidence 4556767777777777777777766655421 00000000 1235777777777778888
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331 (427)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 331 (427)
...++|+++.+.. . ....|..|...|.+.++.++|.++++.|.+.-- -....|...+..+.+.++-+.|..++.++.
T Consensus 1515 sl~kVFeRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1515 SLKKVFERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999998763 2 246789999999999999999999999977622 366789999999999999999999999998
Q ss_pred HcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 332 HKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 332 ~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
+. .|. .....-.+..-.+.|+.+.++.+|+...... +--...|+.+|+.-.++|+.+.+..+|++....++.|-
T Consensus 1592 ~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1592 KS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 76 343 2334445555668899999999999998763 33578899999999999999999999999999988775
Q ss_pred H--hHHHHHHHHHHhcCC
Q 045814 409 V--ITYNTLIQGYCKEGK 424 (427)
Q Consensus 409 ~--~~~~~li~~~~~~g~ 424 (427)
. ..|...++-=.++|+
T Consensus 1669 kmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred HhHHHHHHHHHHHHhcCc
Confidence 3 466666665555554
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.56 E-value=1.6e-05 Score=68.68 Aligned_cols=60 Identities=12% Similarity=0.031 Sum_probs=48.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEMLDKGY--GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.+...|.+.|++++|...++...+... +.....+..+..++...|++++|.++++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345668889999999999999987621 223578889999999999999999999988765
No 101
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=2.3e-05 Score=65.26 Aligned_cols=119 Identities=8% Similarity=0.046 Sum_probs=66.3
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhhcCC--HHHH
Q 045814 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG-YCRIDN--LEEA 358 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a 358 (427)
.++.+++...++...+.+.. |...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44445555555555544332 5556666666666666666666666666655321 44445554444 244444 3666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 359 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.+++++..+.+.. +...+..+...+...|++++|...|+++.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655322 4555566666666666666666666666554
No 102
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=1.9e-05 Score=65.68 Aligned_cols=117 Identities=4% Similarity=0.053 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCC--hHHHHH
Q 045814 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING-LCKSRK--RLEAYR 290 (427)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~--~~~a~~ 290 (427)
+.+++...++........ +...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 334444444444443332 4555555555555555555555555555554322 33444444443 234444 355555
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 291 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus 132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55555554433 4445555555555555555555555555544
No 103
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=0.00068 Score=63.09 Aligned_cols=331 Identities=12% Similarity=0.098 Sum_probs=186.6
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChhHHHHH
Q 045814 82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF-SPNPNSLELYIQCLCESGLIEEAFCA 160 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~ 160 (427)
..++++.|++....+... .+-|...+..=+-++.+.+++++|+.+.+..+. ..+..-+--=..+.-+.+..++|+..
T Consensus 24 ~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~ 101 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT 101 (652)
T ss_pred cchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence 456788899999888653 355677788888889999999999988877442 22211111123444578999999999
Q ss_pred HHHHHhcCCCc-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-hHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHHH
Q 045814 161 FSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-LIQAFCNDGKVSEGYELL-RQVLEDGLVPENTAF 237 (427)
Q Consensus 161 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~ 237 (427)
++ |..+ |..+...-...+.+.+++++|..+|+.+.+.+. -.+.-.+.+-...+-..- ..+......| ..+|
T Consensus 102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~sy 175 (652)
T KOG2376|consen 102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSY 175 (652)
T ss_pred Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchH
Confidence 98 3333 334666666778899999999999999987753 111111111111110000 0122222333 2344
Q ss_pred HHHH---HHHHccCChhHHHHHHHHHhhCC--------C-----CCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 238 NKLI---SRFCEKKNFGRVSELLHTMVARN--------R-----APDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 238 ~~li---~~~~~~~~~~~a~~~~~~m~~~~--------~-----~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
..+. ..+...|++.+|+++++.....+ . .-+.. .--.+.-++-..|+..+|..++....+...
T Consensus 176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~ 255 (652)
T KOG2376|consen 176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP 255 (652)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence 4443 34556899999999998873211 0 00111 112334456678999999999999887754
Q ss_pred CCChhh----HHHHHHHHHccCCHH-------------HHHHHHHHH----------------------------HH--c
Q 045814 301 VPDTVM----YTTVIHGLCKMGWLG-------------DARKMWFEM----------------------------IH--K 333 (427)
Q Consensus 301 ~p~~~~----~~~li~~~~~~g~~~-------------~a~~~~~~m----------------------------~~--~ 333 (427)
. |... -|.++..-....-++ -+......+ .. .
T Consensus 256 ~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp 334 (652)
T KOG2376|consen 256 A-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP 334 (652)
T ss_pred C-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence 3 3321 122221111000000 000000000 00 0
Q ss_pred CCCCCHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHC
Q 045814 334 GLLPNEYTYNSMIHGYCR--IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE--------EMAQK 403 (427)
Q Consensus 334 ~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~ 403 (427)
+..|. ..+.+++..+.+ .....++.+++....+....-...+.-.++......|+++.|.+++. .+.+.
T Consensus 335 ~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~ 413 (652)
T KOG2376|consen 335 GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA 413 (652)
T ss_pred ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence 12222 233444443322 22467777777777665332234566667778889999999999999 66665
Q ss_pred CCCCCHhHHHHHHHHHHhcCC
Q 045814 404 GIFRDVITYNTLIQGYCKEGK 424 (427)
Q Consensus 404 g~~p~~~~~~~li~~~~~~g~ 424 (427)
+..| .+..+++..+.+.++
T Consensus 414 ~~~P--~~V~aiv~l~~~~~~ 432 (652)
T KOG2376|consen 414 KHLP--GTVGAIVALYYKIKD 432 (652)
T ss_pred ccCh--hHHHHHHHHHHhccC
Confidence 5555 445556665655554
No 104
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=0.00014 Score=63.33 Aligned_cols=290 Identities=12% Similarity=0.092 Sum_probs=166.2
Q ss_pred HHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHH--c
Q 045814 112 LFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYI-QCLCESGLIEEAFCAFSKLKEMGVFGS-IKTWNSALLGCIK--I 186 (427)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li-~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~--~ 186 (427)
|.+...-.-.+.+|++++++ ..-.|+-...|.-+ -+|.+.+-++-+.+++..-.+. .|| ....|......-+ .
T Consensus 157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~n 234 (557)
T KOG3785|consen 157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLIN 234 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhc
Confidence 33333333457888888887 33355555555543 4667777788888887766654 233 3333332222222 1
Q ss_pred CChhH--HHHH----------HHHHHhcc--------------------------hhHHHHHhcCChhHHHHHHHHHHHC
Q 045814 187 DRTDL--VWKL----------YHDLIESG--------------------------YLIQAFCNDGKVSEGYELLRQVLED 228 (427)
Q Consensus 187 ~~~~~--a~~~----------~~~~~~~~--------------------------~l~~~~~~~g~~~~a~~~~~~~~~~ 228 (427)
|+..+ -.++ .+.+.+.+ -++-.|.+.+++++|..+.+++..
T Consensus 235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P- 313 (557)
T KOG3785|consen 235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP- 313 (557)
T ss_pred cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC-
Confidence 11111 1111 11222221 155567888999999888766532
Q ss_pred CCCCCHHHHHHHH-----HHHHccCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 045814 229 GLVPENTAFNKLI-----SRFCEKKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302 (427)
Q Consensus 229 ~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 302 (427)
..|-......+. .-........-|.+.|+-.-+++.+.|.. .-.++...+.-..++++++-.++.+..--..-
T Consensus 314 -ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd 392 (557)
T KOG3785|consen 314 -TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND 392 (557)
T ss_pred -CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 122222222222 11122223556777776666665544432 33455555666677888888888877654444
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-
Q 045814 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS-MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL- 380 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l- 380 (427)
|...|| +.++++..|.+.+|+++|-.+....++ |..+|-. +.++|.+.+.++.|++++-.+.. +.+..+.-.+
T Consensus 393 D~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlI 467 (557)
T KOG3785|consen 393 DDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLI 467 (557)
T ss_pred chhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHH
Confidence 555555 678888889999999988777655555 5556654 45688888888888877655533 2233333333
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 412 (427)
..-|.+.+.+--|-+.|+.+... .|++..|
T Consensus 468 An~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 468 ANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred HHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 45677888888888888877764 3444433
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.53 E-value=6.1e-05 Score=74.34 Aligned_cols=133 Identities=9% Similarity=-0.014 Sum_probs=85.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
+...+-.|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|...+++....... +......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence 5666666667777777777777777776665321 3445566666667777777777777777666443 4555666666
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
++.+.|++++|..+|+++...+ .-+..++..+..++-..|+.++|...|+...+.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 6667777777777777776632 223556666666667777777777777766654
No 106
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=8.1e-05 Score=66.64 Aligned_cols=120 Identities=8% Similarity=0.000 Sum_probs=50.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh--HHH
Q 045814 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK-NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR--LEA 288 (427)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--~~a 288 (427)
.+..++|+.+..+++..... +..+|+.--.++...| +++++++.++++.+...+ +..+|+...-.+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence 33444455554444443222 2223333333333333 344555555555444322 222333332223333331 344
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045814 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334 (427)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 334 (427)
..+++++.+...+ |..+|+...-++...|+++++++.++++++.+
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d 172 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED 172 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence 4444444444333 44445544444445555555555555555543
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.51 E-value=0.00045 Score=72.31 Aligned_cols=310 Identities=12% Similarity=0.048 Sum_probs=189.0
Q ss_pred HHcCChHHHHHHHHhcCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CcC--HhhHHHHHHHHHH
Q 045814 117 VEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV------FGS--IKTWNSALLGCIK 185 (427)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~ 185 (427)
...|+++.+..+++..+. ..++.........+...|++++|...+......-- .+. ......+...+..
T Consensus 385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 464 (903)
T PRK04841 385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN 464 (903)
T ss_pred HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence 345666666666655421 11222223344455677899999988887654311 111 1122233345667
Q ss_pred cCChhHHHHHHHHHHhc-------------chhHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcc
Q 045814 186 IDRTDLVWKLYHDLIES-------------GYLIQAFCNDGKVSEGYELLRQVLED----GLV-PENTAFNKLISRFCEK 247 (427)
Q Consensus 186 ~~~~~~a~~~~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~ 247 (427)
.|++++|...+++.... +.+...+...|++++|...+++.... |.. ....++..+...+...
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~ 544 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ 544 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence 89999999998887652 12445567789999999998887642 111 1123455566778889
Q ss_pred CChhHHHHHHHHHhhC----CCC--C-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHHHc
Q 045814 248 KNFGRVSELLHTMVAR----NRA--P-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--YVP--DTVMYTTVIHGLCK 316 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~li~~~~~ 316 (427)
|++++|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+...+..
T Consensus 545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~ 624 (903)
T PRK04841 545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA 624 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence 9999999988876542 211 1 12334455566777899999999988875431 111 23345556667778
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc
Q 045814 317 MGWLGDARKMWFEMIHKGLLP-NEYTY-----NSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAGLCLH 387 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~ 387 (427)
.|+.++|...++......... ....+ ...+..+...|+.+.|.+.+........... ...+..+..++...
T Consensus 625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 704 (903)
T PRK04841 625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL 704 (903)
T ss_pred cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence 899999999988875431110 11111 1122445567899999998877654221111 11234567778899
Q ss_pred CCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCCC
Q 045814 388 GRTDEAYHLFEEMAQK----GIFRD-VITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 388 g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~ 426 (427)
|++++|..++++.... |..++ ..+...+-.++.+.|+.+
T Consensus 705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~ 748 (903)
T PRK04841 705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS 748 (903)
T ss_pred CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999999987653 33332 245666677777877753
No 108
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.49 E-value=9.7e-05 Score=73.85 Aligned_cols=267 Identities=11% Similarity=0.075 Sum_probs=126.2
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPN-SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 182 (427)
+...+-.|+..+...+++++|.++.+. ....|+.. .|-.+...+.+.++..++..+ .+.. ..+...-|...-..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~~~ve~~ 105 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKWAIVEHI 105 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccchhHHHHH
Confidence 345666666666666666666666654 23334322 233333355555555555444 2221 11122222222222
Q ss_pred HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262 (427)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 262 (427)
|...+++..-.. ..-.+..+|-+.|+.++|..+++++.+.... |+.+.|.+...|+.. ++++|.+++.+...
T Consensus 106 ~~~i~~~~~~k~------Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 106 CDKILLYGENKL------ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHhhhhhhH------HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 222221111100 0012444455555555555555555554422 455555555555555 55555555554433
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHH
Q 045814 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPNEYT 341 (427)
Q Consensus 263 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~ 341 (427)
. |...+++..+..+|.++..... .+.+.-..+.+.+... |..--..+
T Consensus 178 ~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 178 R---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred H---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhhccchhHHH
Confidence 3 3334455555555555544321 1222223333333322 22223345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHhHHHHHHHHH
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM-AQKGIFRDVITYNTLIQGY 419 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~ 419 (427)
+-.+-..|-..++++++.++++.+.+..-. |.....-++.+|. +.+.. ...|++. ...|+.-+...+..-|.-|
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~f 300 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADF 300 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHH
Confidence 556667788888899999999998887433 5566667777766 33333 3334333 2335554434444334333
No 109
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=0.0011 Score=61.19 Aligned_cols=330 Identities=15% Similarity=0.095 Sum_probs=211.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChhHHHH
Q 045814 82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIEEAFC 159 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~A~~ 159 (427)
..+++..|+..|-....- -++|...|..-..+|...|++++|++=-.+ ....|+ +..|+-...++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 457788888888777532 244677888888888888888888765544 455666 5678888888888888888888
Q ss_pred HHHHHHhcCCCcCHhhHHHHHHHHHHcC---Ch---------------------hHH-HHHHHHHHhc------------
Q 045814 160 AFSKLKEMGVFGSIKTWNSALLGCIKID---RT---------------------DLV-WKLYHDLIES------------ 202 (427)
Q Consensus 160 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~---------------------~~a-~~~~~~~~~~------------ 202 (427)
.|.+-++.... +...++-+..++.... +. +.+ ..+++.+...
T Consensus 92 ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r 170 (539)
T KOG0548|consen 92 AYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR 170 (539)
T ss_pred HHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence 88877765333 4455555555541110 00 000 0000000000
Q ss_pred ---------------------------------------------------------chhHHHHHhcCChhHHHHHHHHH
Q 045814 203 ---------------------------------------------------------GYLIQAFCNDGKVSEGYELLRQV 225 (427)
Q Consensus 203 ---------------------------------------------------------~~l~~~~~~~g~~~~a~~~~~~~ 225 (427)
.-+.+...+..++..|.+-+...
T Consensus 171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a 250 (539)
T KOG0548|consen 171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA 250 (539)
T ss_pred HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 01556666667777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH-------HHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY-------EEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 226 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
.... -+..-++....+|...|.+..+...-+...+.|.+ ...-| ..+..+|.+.++++.|...|.+....
T Consensus 251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte 327 (539)
T KOG0548|consen 251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE 327 (539)
T ss_pred HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence 7654 35555666667778888877777666666655532 11222 23344666777888888888876544
Q ss_pred CCCCChhhH-------------------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 299 GYVPDTVMY-------------------------TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 299 ~~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
-..|+..+= ..-...+.+.|++..|...|.+++... +-|...|..-.-+|.+.|
T Consensus 328 ~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~ 406 (539)
T KOG0548|consen 328 HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG 406 (539)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence 333322111 111334667789999999999998886 346788888889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 421 (427)
.+..|..=.+...+.. ++....|.-=..++....++++|.+.|++..+. .|+..-+.--+.-|..
T Consensus 407 ~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 407 EYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred hHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 9999988877777652 223444544455666677899999999888875 4666555555555554
No 110
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.47 E-value=0.00016 Score=68.78 Aligned_cols=108 Identities=15% Similarity=0.281 Sum_probs=47.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
+.+......|.+|+.+++.+.+.... ..-|..+...|+..|+++.|+++|.+. ..++-.|..|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 33444445555555555555443221 123444445555555555555555431 1233445555555555
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM 326 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (427)
+.|.++-.+.. |.......|-+-..-.-+.|++.+|+++
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeql 846 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence 55555443332 2222333333333334444444444433
No 111
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.45 E-value=3.1e-05 Score=66.86 Aligned_cols=160 Identities=11% Similarity=0.077 Sum_probs=95.5
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhc-
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLV-P-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN--FTYEEVINGLCKS- 282 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~- 282 (427)
.+...|++++|...++++...... | ...++..+..++...|++++|...++++.+....... .++..+..++.+.
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~ 121 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI 121 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc
Confidence 344445555555555555443221 1 1134455566666666666666666666655321111 1233333334333
Q ss_pred -------CChHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHccCCHHHHHHHHHHHHHcCC--C
Q 045814 283 -------RKRLEAYRVFNDLKERGYVPDTVMY-----------------TTVIHGLCKMGWLGDARKMWFEMIHKGL--L 336 (427)
Q Consensus 283 -------~~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~--~ 336 (427)
|++++|.+.|+.+.+.... +...+ ..+...+.+.|++++|...+++..+... +
T Consensus 122 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~ 200 (235)
T TIGR03302 122 DRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP 200 (235)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence 5566667776666554222 11111 1345667888999999999999987632 1
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.....+..+..++...|++++|..+++.+...
T Consensus 201 ~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 201 ATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23567888999999999999999999988765
No 112
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.0019 Score=62.56 Aligned_cols=291 Identities=14% Similarity=0.091 Sum_probs=167.9
Q ss_pred HHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH----------HhcC---------CCcCHh
Q 045814 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL----------KEMG---------VFGSIK 174 (427)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----------~~~g---------~~p~~~ 174 (427)
..|...|.+++|.++-+....-.--.||......+-..++.+.|++.|++. .... -..|..
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~ 913 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES 913 (1416)
T ss_pred HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence 344556666666666654333333456666666666677788787777642 2211 122556
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 045814 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS 254 (427)
Q Consensus 175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 254 (427)
.|......+...|+.+.|+.+|.....+-.+.+..|-.|+.++|-++-++- -|......|.+.|-..|++.+|.
T Consensus 914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av 987 (1416)
T KOG3617|consen 914 LYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAV 987 (1416)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHH
Confidence 667777777889999999999999999989999999999999998776543 25567778889999999999999
Q ss_pred HHHHHHhhCC--CCC--CHhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 255 ELLHTMVARN--RAP--DNFTYEEVINGLCKSR--KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 255 ~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
..|.+..... +.. ....-..|.+.+.-.| +.-.|-++|++. |.. +...+-.|-+.|.+.+|+++--
T Consensus 988 ~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen 988 KFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHH
Confidence 9987754321 000 0000011111111111 222333344332 111 1123344566666666655422
Q ss_pred H--------HHHcCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH--------------------------CCCCC
Q 045814 329 E--------MIHKGL--LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD--------------------------KGYGE 372 (427)
Q Consensus 329 ~--------m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------------------------~~~~p 372 (427)
+ ++..++ ..|+...+.-...++...++++|..++....+ .+-.|
T Consensus 1060 ~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCc
Confidence 1 122222 22444455545555555555555555432221 11122
Q ss_pred Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814 373 TT----VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427 (427)
Q Consensus 373 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 427 (427)
+. .....+...|.+.|.+..|-+-|-+.-++ -.-++++.++|+.++
T Consensus 1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred cHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence 32 45666777888999998888777655432 134566777777654
No 113
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.43 E-value=0.00033 Score=58.75 Aligned_cols=154 Identities=18% Similarity=0.112 Sum_probs=87.0
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-
Q 045814 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK- 316 (427)
Q Consensus 238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~- 316 (427)
..-...|+..|++++|++.++... +......=+..+.+..+.+-|.+.+++|.+- -+..|.+.|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL 182 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence 333445666677777776665411 2222333334445666667777777777654 244555555555543
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-
Q 045814 317 ---MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE- 392 (427)
Q Consensus 317 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~- 392 (427)
.+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++......+ ++.+...+|..-...|...+
T Consensus 183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~ 260 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV 260 (299)
T ss_pred hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence 34566777777776653 4566666666666666777777777777777665433 45555555555445554433
Q ss_pred HHHHHHHHHH
Q 045814 393 AYHLFEEMAQ 402 (427)
Q Consensus 393 A~~~~~~m~~ 402 (427)
..+.+.++..
T Consensus 261 ~~r~l~QLk~ 270 (299)
T KOG3081|consen 261 TERNLSQLKL 270 (299)
T ss_pred HHHHHHHHHh
Confidence 3344455444
No 114
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.43 E-value=0.00072 Score=62.29 Aligned_cols=139 Identities=17% Similarity=0.232 Sum_probs=107.7
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHK 363 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 363 (427)
.+....++++++..-..--..+|...+....+..-++.|..+|.++.+.+..+ ++..++++|..||. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45556666666544222223467778888888888999999999999998887 78888999998875 68899999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCC
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV--ITYNTLIQGYCKEGKI 425 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~ 425 (427)
.-.+. +.-++.--...++-+...++-..|..+|++....++.||. ..|..+|+-=+.-|+.
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL 488 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL 488 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence 87765 3335566677888889999999999999999998777664 6899888877777764
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.43 E-value=8.8e-05 Score=71.31 Aligned_cols=260 Identities=13% Similarity=0.128 Sum_probs=164.3
Q ss_pred CCHhhHHHHHH--HHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CCcC
Q 045814 104 PDLVSCNVLFD--SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM-G--------VFGS 172 (427)
Q Consensus 104 ~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~~p~ 172 (427)
-|..|-.++++ .|.-.|+.+.|.+-.+-+ .+...|..+.+.|.+..+++-|.-.+..|... | ..|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~ 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence 35555555553 455678888886665544 35677888888888888888887777666432 1 1221
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 045814 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252 (427)
Q Consensus 173 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 252 (427)
.+-....-.....|..++|+.+|.+-.+.+.|-+.|-..|.+++|+++-+.=-+-. -..||......+...+|.+.
T Consensus 801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 801 -EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred -chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 23333334456789999999999999999999999999999999988765432222 23577777777777889999
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 253 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
|++.|++.... --.++..|. .++...+.+.+++. |...|.--.+.....|+.+.|+.+|.....
T Consensus 877 AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 877 ALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 99888764221 111111111 12333333334333 334455555556667777777777766543
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
|-++++..|-+|+.++|-++-++- | |....-.|.+.|-..|++.+|..+|-+.+
T Consensus 941 ---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 345556666677777777665542 1 44555566677777777777777766554
No 116
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.40 E-value=5.8e-07 Score=51.51 Aligned_cols=33 Identities=61% Similarity=0.986 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888887
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.38 E-value=0.00013 Score=60.94 Aligned_cols=159 Identities=14% Similarity=0.062 Sum_probs=109.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 045814 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM 317 (427)
Q Consensus 238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 317 (427)
..+-..+...|+-+....+........ ..|.......+....+.|++.+|...|++...... +|..+|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 444555666666666666665543321 22444555577777788888888888888776543 4777888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 397 (427)
|+.++|..-|.+..+.... +...++.+.-.|.-.|+.+.|..++......+.. |..+-..+.......|++++|..+-
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888887776332 4556777777777778888888888877766433 6666677777777888888887776
Q ss_pred HHH
Q 045814 398 EEM 400 (427)
Q Consensus 398 ~~m 400 (427)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 443
No 118
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.36 E-value=9.8e-05 Score=70.15 Aligned_cols=109 Identities=17% Similarity=0.159 Sum_probs=74.7
Q ss_pred HHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH
Q 045814 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL 320 (427)
Q Consensus 241 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 320 (427)
+.+......|.+|+.+++.+..... -..-|..+.+.|...|+++.|+++|.+.- .++-.|..|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 4445566778888888887776633 34567888899999999999999997542 345578899999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362 (427)
Q Consensus 321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 362 (427)
+.|.++-.+.. |.......|-+-..-.-+.|.+.+|+++|
T Consensus 808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 99998876653 33334444544444444555555555444
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.35 E-value=5.5e-05 Score=63.20 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=117.2
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 045814 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 288 (427)
+...|+-+....+......... .|....+..+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+.++|
T Consensus 76 ~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~A 153 (257)
T COG5010 76 LYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEA 153 (257)
T ss_pred HHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHH
Confidence 3344555555555554433222 266666678888889999999999999887664 56888999999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
..-|.+..+.-.. +...+|.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|+.+...-.
T Consensus 154 r~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 154 RRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 9999998887554 5667788888888889999999999988887543 66667777778888999999988876544
No 120
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=0.0016 Score=64.51 Aligned_cols=279 Identities=14% Similarity=0.135 Sum_probs=197.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHh----------------cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC--C
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDS----------------TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG--V 169 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~ 169 (427)
.|-...+.+.+..+.+.-.+++.+ .+-..|++..+.-.+++...+...+-.++++++.-.. .
T Consensus 938 lfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F 1017 (1666)
T KOG0985|consen 938 LFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF 1017 (1666)
T ss_pred HHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc
Confidence 444555556666665554444421 1334567777788899999999999999999987432 1
Q ss_pred CcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 045814 170 FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247 (427)
Q Consensus 170 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 247 (427)
.-+...-|.|+-...+ .+..++.+..+++-..+. +...+...+-+++|..+|++.. .+....+.||.- -
T Consensus 1018 se~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i 1088 (1666)
T KOG0985|consen 1018 SENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---I 1088 (1666)
T ss_pred ccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---h
Confidence 1122223333333333 455566677666665543 6777778888999999998754 245566666643 4
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 045814 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (427)
+.++.|.+.-++.. ...+|+.+..+-.+.|...+|.+-|-+.. |+..|.-++....+.|.+++..+++
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 56777776655432 34689999999999999999988776542 7789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407 (427)
Q Consensus 328 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (427)
...++..-.|... +.+|-+|++.+++.+-++++ ..||......+.+-|...|.++.|.-+|....
T Consensus 1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS------ 1221 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS------ 1221 (1666)
T ss_pred HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh------
Confidence 9988887666654 67899999999987766543 24788999999999999999999888776543
Q ss_pred CHhHHHHHHHHHHhcCCC
Q 045814 408 DVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 408 ~~~~~~~li~~~~~~g~~ 425 (427)
.|..|...+...|++
T Consensus 1222 ---N~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1222 ---NFAKLASTLVYLGEY 1236 (1666)
T ss_pred ---hHHHHHHHHHHHHHH
Confidence 355555555555543
No 121
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.32 E-value=1.1e-06 Score=49.97 Aligned_cols=33 Identities=36% Similarity=0.607 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407 (427)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (427)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.30 E-value=0.00011 Score=57.82 Aligned_cols=92 Identities=9% Similarity=-0.079 Sum_probs=47.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 045814 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388 (427)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 388 (427)
.....+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 34444455555555555555555442 1234445555555555555555555555555432 124455555555555555
Q ss_pred CHHHHHHHHHHHHH
Q 045814 389 RTDEAYHLFEEMAQ 402 (427)
Q Consensus 389 ~~~~A~~~~~~m~~ 402 (427)
++++|...|+...+
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555554
No 123
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00028 Score=59.11 Aligned_cols=183 Identities=17% Similarity=0.085 Sum_probs=128.0
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHH-HHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 045814 231 VPENTAFNKLISRFCEKKNFGRVSE-LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (427)
.|....+..+......-++.++-.. +.+.+.......+......-...|+..|++++|++...... +......
T Consensus 69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al 142 (299)
T KOG3081|consen 69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAAL 142 (299)
T ss_pred CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHH
Confidence 3444444444444444444444333 44444444344343444455567889999999999988732 2223333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
=+..+.+..+.+-|.+.+++|.+-. +..|.+.|..++.+ .+.+..|.-+|++|.++ .+|+..+.+-...++.
T Consensus 143 ~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 143 NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence 3455678888999999999999853 66788877777654 35799999999999875 7889999999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424 (427)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 424 (427)
..|++++|..++++...+... ++.|..-+|-.--..|+
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 999999999999999987544 56666666665555554
No 124
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=0.00012 Score=57.64 Aligned_cols=93 Identities=5% Similarity=-0.176 Sum_probs=52.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
.....+...|++++|...|+........ +...|..+..++.+.|++++|...|+...... +.+..++..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444555566666666666665554332 44555555566666666666666666665543 224455555555566666
Q ss_pred CHHHHHHHHHHHHHC
Q 045814 354 NLEEAKRLHKEMLDK 368 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~ 368 (427)
+.++|...|+...+.
T Consensus 107 ~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 107 EPGLAREAFQTAIKM 121 (144)
T ss_pred CHHHHHHHHHHHHHh
Confidence 666666666665553
No 125
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.25 E-value=0.0025 Score=55.55 Aligned_cols=299 Identities=11% Similarity=0.076 Sum_probs=156.1
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHhhHHHH---HHHHHHcCChHHHHHHHHh-cCCCCCHHhH-HHHHHHHHhcCChhH
Q 045814 82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDS-TGFSPNPNSL-ELYIQCLCESGLIEE 156 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~-~~~~~~~~~~-~~li~~~~~~~~~~~ 156 (427)
..+.+..|+.-|+.+. .-|+..|.++ ...|...|+-..|+.=+.+ ....||-..- -.-...+.+.|.+++
T Consensus 50 a~~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 50 ARGQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred HhhhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 3455555555555553 2333333333 3455556665555555544 3445553321 112344566777777
Q ss_pred HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 045814 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA 236 (427)
Q Consensus 157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 236 (427)
|..=|+...+.... ..+ ...+..+.--.++-..+.. .+..+...|+...|+.....+++..+- |...
T Consensus 125 A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~~l~~-------ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l 191 (504)
T KOG0624|consen 125 AEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHWVLVQ-------QLKSASGSGDCQNAIEMITHLLEIQPW-DASL 191 (504)
T ss_pred HHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHHHHHH-------HHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence 77777777665321 111 0111111111111111111 233455566777777777766664332 6666
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh----HHHH--
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM----YTTV-- 310 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l-- 310 (427)
|..-..+|...|++..|+.=++..-+..- -+..++--+-..+.+.|+.+.++...++-++. .||... |-.+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 66666777777777777666655544322 23444555556666777777777666666554 233321 1111
Q ss_pred -------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHH
Q 045814 311 -------IHGLCKMGWLGDARKMWFEMIHKGLLPNEYT---YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNT 379 (427)
Q Consensus 311 -------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ 379 (427)
+......+++.++..-.+...+......... +..+-.+|...|++.+|++...+..+. .| |+.++.-
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d 346 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence 1123344566666666666655532212222 334455666667777777777777654 23 3556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 380 LIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
-..+|.-...+++|+.-|+...+.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhc
Confidence 666666666677777666666553
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.25 E-value=0.0006 Score=68.42 Aligned_cols=210 Identities=8% Similarity=-0.045 Sum_probs=134.2
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH--HH----------------hcCCCC-CH
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF--LD----------------STGFSP-NP 138 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~--~~----------------~~~~~~-~~ 138 (427)
......++++.|.++++.......-.+....+..+ .+.+.++.+.+.-+ .+ .++.-+ +.
T Consensus 39 ~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k 116 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENK 116 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhh
Confidence 44557799999999999776543333333344433 56666666655444 11 111111 12
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a 218 (427)
.++-.+..+|-+.|+.++|..+|+++.+.... |+.+.|.+...|+.. +.++|.+++...+.. +...+++..+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------~i~~kq~~~~ 188 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR------FIKKKQYVGI 188 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------HHhhhcchHH
Confidence 46677888888999999999999999998855 889999999999999 999999999988764 6777788888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 297 (427)
.+++.++....+. +...+..++ +.+... |..--+.++-.+...|...++++++..++..+.+
T Consensus 189 ~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 189 EEIWSKLVHYNSD-DFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHHHHHHHhcCcc-cchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 8888888775433 222222221 111111 1122234455555666666677777777777766
Q ss_pred CCCCCChhhHHHHHHHHH
Q 045814 298 RGYVPDTVMYTTVIHGLC 315 (427)
Q Consensus 298 ~~~~p~~~~~~~li~~~~ 315 (427)
...+ |.....-++..|.
T Consensus 252 ~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 252 HDNK-NNKAREELIRFYK 268 (906)
T ss_pred cCCc-chhhHHHHHHHHH
Confidence 5433 4444444555544
No 127
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.24 E-value=0.0019 Score=62.14 Aligned_cols=129 Identities=13% Similarity=0.029 Sum_probs=104.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGY 349 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~ 349 (427)
.|......+.+.+..++|...+.+..+... -.+..|......+...|..++|.+.|...... .|+ +....++..++
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l 728 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL 728 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 455666778888999999888887766532 25667777777888889999999999988875 344 56788889999
Q ss_pred hhcCCHHHHHH--HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 350 CRIDNLEEAKR--LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 350 ~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.+.|+...|.. ++.++.+.+.. +...|-.+...+-+.|+.+.|.+.|....+.
T Consensus 729 le~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 729 LELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 99998887777 99999987644 7899999999999999999999999887764
No 128
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.23 E-value=2.4e-06 Score=48.86 Aligned_cols=32 Identities=41% Similarity=0.885 Sum_probs=13.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 338 (427)
||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.23 E-value=0.00046 Score=68.28 Aligned_cols=135 Identities=12% Similarity=0.057 Sum_probs=115.8
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345 (427)
Q Consensus 266 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 345 (427)
..+...+-.|.....+.|.+++|+.+++...+.... +......+...+.+.+++++|...+++....... +......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 446788899999999999999999999999987433 4557778889999999999999999999987432 56677788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..++.+.|++++|..+|+++...+ +-+...+..+..++...|+.++|...|++..+.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999999999999843 235788999999999999999999999998774
No 130
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.22 E-value=2.6e-05 Score=71.56 Aligned_cols=123 Identities=10% Similarity=0.154 Sum_probs=79.2
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045814 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342 (427)
Q Consensus 265 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 342 (427)
...+......+++.+....+.+.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+.||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666666677777777666544 22122334457777777777777777777777777777777777
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387 (427)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (427)
|.+|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777766665555556665555555444
No 131
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.21 E-value=0.00011 Score=57.29 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=50.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 386 (427)
...+...+...|++++|...++.+...+ +.+...+..+..++...|++++|..+++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 3444455555555666665555555543 2244455555555555566666666655555442 2234455555555556
Q ss_pred cCCHHHHHHHHHHHHH
Q 045814 387 HGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 387 ~g~~~~A~~~~~~m~~ 402 (427)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666655555
No 132
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.21 E-value=0.003 Score=55.09 Aligned_cols=277 Identities=12% Similarity=0.059 Sum_probs=165.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHH---HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHH-HHHHHHH
Q 045814 109 CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYI---QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN-SALLGCI 184 (427)
Q Consensus 109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~ 184 (427)
.--+-..+...|++..|+.-|... +.-|+..|-++. ..|...|+...|+.=+.+..+. +||-..-. .-...
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaA-ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v-- 115 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAA-VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV-- 115 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh--
Confidence 333445555556666666555542 123333343332 3455556666666666555553 44422111 11123
Q ss_pred HcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC------------CH--HHHHHHHHHHHccCCh
Q 045814 185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP------------EN--TAFNKLISRFCEKKNF 250 (427)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~--~~~~~li~~~~~~~~~ 250 (427)
+.+.|.+++|..-|+..++....- .. ......+..+.-.|+.
T Consensus 116 ------------------------llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 116 ------------------------LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC 171 (504)
T ss_pred ------------------------hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence 344555555555555554433210 01 1122234456678999
Q ss_pred hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 251 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 330 (427)
..|+.....+.+-. +-|...|..-..+|...|++..|+.-+....+..-. ++.++--+-..+...|+.+.++...++.
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998874 347788888899999999999999888877666443 5555666677788899999999999888
Q ss_pred HHcCCCCCHHH-HH---H---H------HHHHhhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHH
Q 045814 331 IHKGLLPNEYT-YN---S---M------IHGYCRIDNLEEAKRLHKEMLDKGYGETT---VTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 331 ~~~~~~p~~~~-~~---~---l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~ 394 (427)
.+. .||... |. . + +......++|.++.+-.+...+....... ..+..+-.++...|++.+|+
T Consensus 250 LKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 250 LKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred Hcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 875 455432 21 1 1 12234556777888777777765332122 23445556777889999999
Q ss_pred HHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 045814 395 HLFEEMAQKGIFRD-VITYNTLIQGYC 420 (427)
Q Consensus 395 ~~~~~m~~~g~~p~-~~~~~~li~~~~ 420 (427)
....+..+. .|| +.++.--..+|.
T Consensus 328 qqC~evL~~--d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 328 QQCKEVLDI--DPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHHHHHhc--CchHHHHHHHHHHHHh
Confidence 998888863 454 444444444443
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=0.00082 Score=61.29 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=68.9
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHH
Q 045814 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGD 322 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~ 322 (427)
+...|++++|+..+..++..- +-|...+....+.+.+.++..+|.+.++++... .|+ ....-.+..++.+.|++.+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 344566666666666665552 123444445556666666666666666666655 233 3344445566666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
|..+++...... +-|...|..|..+|...|+..++..-..+.
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 666666665553 335566666666666666666666555554
No 134
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.17 E-value=4.9e-05 Score=69.82 Aligned_cols=125 Identities=13% Similarity=0.115 Sum_probs=106.5
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN--RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 305 (427)
.+...+......+++.+....+.+.+..++.+..... ...-..|..++++.|.+.|..+++..++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 3445578888999999999999999999999887762 22334567799999999999999999999999999999999
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 352 (427)
++|.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999998888777888887777766665
No 135
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=0.00018 Score=65.86 Aligned_cols=125 Identities=14% Similarity=0.119 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 045814 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351 (427)
Q Consensus 272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 351 (427)
...++..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++..+.. +-+...+..-...|.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455556666778888888888887763 33 34446677777777778888888877652 2255566666667778
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 352 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.++++.|..+.+++.+.. +-+-.+|..|..+|...|+++.|+-.++.+..
T Consensus 247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 888888888888887752 22456888888888888888888888777664
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.15 E-value=4e-06 Score=47.54 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=11.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGL 335 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 335 (427)
|+++|.+|++.|+++.|.+++++|.+.|+
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33333333333333333333333333333
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.14 E-value=0.00014 Score=56.59 Aligned_cols=94 Identities=13% Similarity=0.038 Sum_probs=44.5
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (427)
...+...+...|++++|.+.++.....+ +.+...+..+...+.+.|++++|...++...+.+.. +...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence 3344444445555555555555544432 123344444455555555555555555554444321 33344444444555
Q ss_pred cCCHHHHHHHHHHHHH
Q 045814 317 MGWLGDARKMWFEMIH 332 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~ 332 (427)
.|+.++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 138
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.10 E-value=0.0064 Score=59.64 Aligned_cols=193 Identities=15% Similarity=0.079 Sum_probs=118.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 289 (427)
.+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|++.... .|+......+..+|.+.+.+.+-.
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777666666655555 7778888888888888888888888887766 455666677777777777776544
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCC----------HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHH
Q 045814 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGW----------LGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEA 358 (427)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a 358 (427)
++=-+|.+.- .-+...+-++++.+.+.-. ..-|.+..+.+.+.+ .--+..-...........|++++|
T Consensus 131 kaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 4433333321 1244555555555554321 234566666666554 111222222223344567788888
Q ss_pred HHHH-HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045814 359 KRLH-KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406 (427)
Q Consensus 359 ~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (427)
..++ ....+.-..-+...-+.-++.+...++|.+..++..++..+|-.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 8887 34444333334445556677777888888888888888777533
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.09 E-value=4.9e-06 Score=46.02 Aligned_cols=30 Identities=50% Similarity=0.979 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (427)
+|+++|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 140
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.08 E-value=6.8e-05 Score=54.13 Aligned_cols=70 Identities=11% Similarity=0.232 Sum_probs=36.0
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814 352 IDNLEEAKRLHKEMLDKGY-GETTVTYNTLIAGLCLHG--------RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421 (427)
Q Consensus 352 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 421 (427)
.+++.....+|+.++..|+ -|+..+|+.++.+.++.. +.-+++.+|++|...+++|+..||+.++..+.+
T Consensus 38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 3444444555555554444 444555555544443321 233455566666666666666666666655543
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.00049 Score=62.73 Aligned_cols=159 Identities=14% Similarity=0.047 Sum_probs=97.7
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045814 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311 (427)
Q Consensus 232 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (427)
|+...+...+........-..+...+.+..+. .-...-|..-+ .+...|++++|+..++.+.+.-.. |+..+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 45555555555544433333333333322221 11223344333 344678888888888887766322 455555666
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 045814 312 HGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT 390 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 390 (427)
..+.+.|+.++|.+.++++... .|+ ....-.+..+|.+.|++.+|.+++++..... +-|+..|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence 7788888888888888888776 455 4445556777888888888888888877663 44777888887777766555
Q ss_pred HHHHHHH
Q 045814 391 DEAYHLF 397 (427)
Q Consensus 391 ~~A~~~~ 397 (427)
.+|..-.
T Consensus 425 ~~a~~A~ 431 (484)
T COG4783 425 AEALLAR 431 (484)
T ss_pred HHHHHHH
Confidence 5444433
No 142
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.07 E-value=7.7e-05 Score=53.86 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=39.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGL-LPNEYTYNSMIHGYCRID--------NLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. .+.+.+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544432 2334455555565555666666666655
Q ss_pred HHHH
Q 045814 382 AGLC 385 (427)
Q Consensus 382 ~~~~ 385 (427)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5544
No 143
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.03 E-value=0.00029 Score=55.61 Aligned_cols=125 Identities=13% Similarity=0.100 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD---TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE--YTYNSM 345 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l 345 (427)
.|..++..+ ..++...+...++.+.+.... + ....-.+...+...|++++|...|+........|+. ...-.+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 366666666666666655322 1 112223345566677777777777777765422221 123334
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (427)
...+...|++++|...++...... .....+....+.|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 556667777777777775543322 2344555666777777777777777765
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.01 E-value=0.00028 Score=64.64 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=71.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (427)
...|+..+...++++.|.++++++.+.. |+ ....+.+.+...++-.+|.+++++..+.... +......-...+.+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 3444555555666666666666666553 33 2334555555666666666666666654322 44444444555666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 317 MGWLGDARKMWFEMIHKGLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
.++.+.|..+.+++.+. .|+. .+|..|..+|...|+++.|...++.+
T Consensus 247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666666664 3443 36666666666666666666666544
No 145
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.99 E-value=0.009 Score=59.39 Aligned_cols=150 Identities=12% Similarity=0.125 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCC----CHHhHHHHHHHHH
Q 045814 74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP----NPNSLELYIQCLC 149 (427)
Q Consensus 74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~li~~~~ 149 (427)
.+++++++...+...|.+.|+.+.+- -..+......+.+.|++...++.|..+.-..+... -...|-...-.|.
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 45677777767888888888887532 12356788888999999999999998853322111 1223334455677
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHH
Q 045814 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYEL 221 (427)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~ 221 (427)
+.+++..|..-|+...+..+. |...|..++.+|.+.|++..|.++|.++...+. ..-..|..|.+.+|+..
T Consensus 574 ea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred CccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 788888888888888877665 778888888888888888888888877665532 23345567777777777
Q ss_pred HHHHH
Q 045814 222 LRQVL 226 (427)
Q Consensus 222 ~~~~~ 226 (427)
+....
T Consensus 653 l~~ii 657 (1238)
T KOG1127|consen 653 LGLII 657 (1238)
T ss_pred HHHHH
Confidence 66654
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00056 Score=53.95 Aligned_cols=127 Identities=7% Similarity=0.056 Sum_probs=84.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT--VMYTTVI 311 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li 311 (427)
.|..++..+ ..++...+...++.+........ ....-.+...+...|++++|...|+........|+. .....+.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455555555 37778888888888877643211 123334456777888888888888888876533322 2344466
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
..+...|++++|+..++...... .....+......|.+.|+.++|...|+..
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77778888888888886643332 23445666777888888888888888753
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0096 Score=49.89 Aligned_cols=84 Identities=21% Similarity=0.191 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 361 (427)
.|.+++|+++++.+.+.+.. |.++|-.-+...-..|+.-+|++-+.+..+. ...|...|.-+-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 45555555555555554422 3444444444444444444555555544443 233555555555555555555555555
Q ss_pred HHHHHH
Q 045814 362 HKEMLD 367 (427)
Q Consensus 362 ~~~m~~ 367 (427)
++++.-
T Consensus 177 lEE~ll 182 (289)
T KOG3060|consen 177 LEELLL 182 (289)
T ss_pred HHHHHH
Confidence 555544
No 148
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.9e-05 Score=43.53 Aligned_cols=24 Identities=42% Similarity=0.816 Sum_probs=8.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m 330 (427)
|++++++|++.|++++|.+++++|
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M 26 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEM 26 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHH
Confidence 333333333333333333333333
No 149
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.0053 Score=56.76 Aligned_cols=215 Identities=15% Similarity=0.078 Sum_probs=145.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch---------------h
Q 045814 141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------------L 205 (427)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------l 205 (427)
...+..+.-+..++..|++-+....+.. -+..-++..-.+|...|.+.+....-+..++.|. +
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456777778889999999999888765 3566667777788888888877777666665542 3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
..+|.+.++++.+...|.+.......|+ ...+....+++....+...-.+... ..-.-.-.+.+.+.|++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 4467777888888888887665433332 1222333445555444443332221 11122225677889999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
..|.+.|.++.+.... |...|+....+|.+.|.+..|+.=.+...+.. ++....|.-=..++....++++|.+.|++.
T Consensus 375 ~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888744 78899999999999999999988877777762 222333443344445556788888888888
Q ss_pred HHCC
Q 045814 366 LDKG 369 (427)
Q Consensus 366 ~~~~ 369 (427)
.+.+
T Consensus 453 le~d 456 (539)
T KOG0548|consen 453 LELD 456 (539)
T ss_pred HhcC
Confidence 8763
No 150
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.012 Score=49.35 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=61.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
.|++++|.++++.+...... |..++---+-..-..|+..+|++-+....+. +..|...|.-+-..|...|++++|.-.
T Consensus 99 ~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC 176 (289)
T KOG3060|consen 99 TGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC 176 (289)
T ss_pred hhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence 45556666666666555432 4555554444444555555555555555544 344556666666666666666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHHc
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGLCK---MGWLGDARKMWFEMIHK 333 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 333 (427)
++++.-..+. +...+..+...+.- ..+.+.+.++|.+..+.
T Consensus 177 lEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 177 LEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6666544221 33333333333222 22345555666655554
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.86 E-value=0.00031 Score=62.06 Aligned_cols=130 Identities=9% Similarity=0.091 Sum_probs=71.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
+|..+++...+.+..+.|..+|.+..+.+.. +...|-..... |...++.+.|..+|+...+. ...+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 4566666666666666666666666643221 22233332222 22234555566676666654 333555566666666
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
...|+.+.|+.+|++.... +.++ ...|...++.-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666777777777666654 2222 236666666666667777777776666653
No 152
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.81 E-value=0.0031 Score=62.43 Aligned_cols=55 Identities=11% Similarity=0.048 Sum_probs=28.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHH
Q 045814 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL 195 (427)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~ 195 (427)
.|..|...|+...+...|.+.|++..+.... +...+..+.+.|++..++++|..+
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence 4555555555555555555555555544333 444455555555555555555554
No 153
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.028 Score=50.40 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=85.7
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045814 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348 (427)
Q Consensus 269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 348 (427)
..+.+..|.-+...|+...|.++-.+.. .|+..-|...+.+++..+++++...+-.. . -++.-|..++.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence 3466666777888899888888866653 37999999999999999999988876542 1 134678999999
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 397 (427)
|.+.|+..+|..+...+ .+..-+..|.+.|++.+|.+.-
T Consensus 247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999888772 2356678888999999887653
No 154
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.75 E-value=0.00075 Score=55.22 Aligned_cols=104 Identities=18% Similarity=0.199 Sum_probs=52.5
Q ss_pred CCHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 045814 267 PDNFTYEEVINGLCK-----SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341 (427)
Q Consensus 267 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 341 (427)
.|..+|..+++.|.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- |.. .
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~ 107 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F 107 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence 355566666666553 24555555556666666666666666666665543 2210 000 0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (427)
+-++...|- .+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 000000011 1234566666666666666666666666666644443
No 155
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.71 E-value=0.0024 Score=52.01 Aligned_cols=130 Identities=12% Similarity=0.042 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD--TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 347 (427)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++...... -+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3556666666677777777777777765433222 24566666667777777777777777666421 13444555555
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+|...|+...+..-++... ..+++|.+++++.... +...|..++..+...|+.
T Consensus 115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~ 167 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCcc
Confidence 6666555444333222211 1145566666666553 333366666666666654
No 156
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.69 E-value=0.0011 Score=54.21 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHHc-----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 045814 231 VPENTAFNKLISRFCE-----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~ 305 (427)
..+..+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 4588999999999976 46788888899999999999999999999998765 3332 111111111
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEML 366 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 366 (427)
-- .-.+-+-|++++++|...|+-||..|+..+++.+.+.+. +.+..++.--|.
T Consensus 113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 11 123356788888888888888888888888888877764 334444444333
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.67 E-value=0.0028 Score=47.82 Aligned_cols=97 Identities=13% Similarity=0.063 Sum_probs=50.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHH
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIA 382 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~ 382 (427)
+..+...+.+.|++++|...++.+...... .....+..+..++.+.|+++.|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 344445555556666666666665543211 01233444555566666666666666665543211 11334555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 045814 383 GLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~ 403 (427)
++...|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 566666666666666666554
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.66 E-value=0.0012 Score=47.09 Aligned_cols=93 Identities=17% Similarity=0.227 Sum_probs=50.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (427)
..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 3344455555666666666666555421 122444555555556666666666666655542 12334555555666666
Q ss_pred CCHHHHHHHHHHHHH
Q 045814 388 GRTDEAYHLFEEMAQ 402 (427)
Q Consensus 388 g~~~~A~~~~~~m~~ 402 (427)
|++++|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655543
No 159
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.65 E-value=0.0023 Score=48.27 Aligned_cols=97 Identities=12% Similarity=0.069 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 045814 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYNSMIH 347 (427)
Q Consensus 272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~ 347 (427)
+..+...+.+.|++++|...|..+.+.... .....+..+..++.+.|++++|...++.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444445555555555555555443211 01223344555555555555555555555543211 11233444445
Q ss_pred HHhhcCCHHHHHHHHHHHHHC
Q 045814 348 GYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~~ 368 (427)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 555555555555555555554
No 160
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.63 E-value=0.0013 Score=46.93 Aligned_cols=93 Identities=17% Similarity=0.146 Sum_probs=48.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352 (427)
Q Consensus 273 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 352 (427)
..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++....... .+..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence 33444455555666666666555544221 224444555555555666666666665555431 1234555555556666
Q ss_pred CCHHHHHHHHHHHHH
Q 045814 353 DNLEEAKRLHKEMLD 367 (427)
Q Consensus 353 g~~~~a~~~~~~m~~ 367 (427)
|+++.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 666666666655543
No 161
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=0.00016 Score=50.96 Aligned_cols=81 Identities=21% Similarity=0.205 Sum_probs=39.6
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045814 317 MGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 395 (427)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666555321 1233333355566666666666666655 211111 22233333555666666666666
Q ss_pred HHHH
Q 045814 396 LFEE 399 (427)
Q Consensus 396 ~~~~ 399 (427)
+|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0024 Score=51.85 Aligned_cols=93 Identities=13% Similarity=0.080 Sum_probs=47.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 383 (427)
.|..+...+...|++++|...+++.......+ ...++..+...|...|++++|...++...... +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 44444555555566666666666655442221 12345555556666666666666666655431 1123334444444
Q ss_pred HH-------hcCCHHHHHHHHHH
Q 045814 384 LC-------LHGRTDEAYHLFEE 399 (427)
Q Consensus 384 ~~-------~~g~~~~A~~~~~~ 399 (427)
+. ..|++++|...+++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHH
Confidence 44 66666655554443
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.60 E-value=0.016 Score=51.35 Aligned_cols=130 Identities=15% Similarity=0.199 Sum_probs=57.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCC-----cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814 145 IQCLCESGLIEEAFCAFSKLKEMGVF-----GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219 (427)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (427)
...|-..|++++|.+.|.+....... .-...|.....+|.+. ++++|...+++.. ..|...|++..|-
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~------~~y~~~G~~~~aA 114 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI------EIYREAGRFSQAA 114 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH------HHHHHCT-HHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH------HHHHhcCcHHHHH
Confidence 45566667777777776655432111 0112233333333332 5555555555443 2344555555443
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHhcCChHHHHHHH
Q 045814 220 ELLRQVLEDGLVPENTAFNKLISRFCEK-KNFGRVSELLHTMVAR----NRAPD--NFTYEEVINGLCKSRKRLEAYRVF 292 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~ 292 (427)
..+. .+...|... |++++|.+.|++..+. + .+. ...+..+...+.+.|++++|..+|
T Consensus 115 ~~~~---------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~ 178 (282)
T PF14938_consen 115 KCLK---------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIY 178 (282)
T ss_dssp HHHH---------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3332 233344444 5666666666544332 1 110 123344445555556666666666
Q ss_pred HHHHh
Q 045814 293 NDLKE 297 (427)
Q Consensus 293 ~~m~~ 297 (427)
+++..
T Consensus 179 e~~~~ 183 (282)
T PF14938_consen 179 EEVAK 183 (282)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 164
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.041 Score=47.43 Aligned_cols=173 Identities=16% Similarity=0.137 Sum_probs=96.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cC
Q 045814 209 FCNDGKVSEGYELLRQVLEDGLVPENTA---FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK--SR 283 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~ 283 (427)
+...|++++|.+.|+.+...-+.+ ... .-.+..++.+.+++++|...+++..+..+.-...-|...+.+.+. .+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~ 120 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD 120 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence 345666777777777766643332 222 233456667777777777777777766443222333333333321 00
Q ss_pred ---------------Ch---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814 284 ---------------KR---LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345 (427)
Q Consensus 284 ---------------~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 345 (427)
+. .+|...|+.+.+ -|=...-..+|...+..+... + -..- -.+
T Consensus 121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~-l--a~~e-~~i 181 (243)
T PRK10866 121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR-L--AKYE-LSV 181 (243)
T ss_pred hhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH-H--HHHH-HHH
Confidence 11 123333333332 222223344444444333322 0 0011 245
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
.+.|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 66788899999999999998876 333345667778889999999999988776654
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.58 E-value=0.0053 Score=49.97 Aligned_cols=95 Identities=7% Similarity=-0.030 Sum_probs=73.8
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (427)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.... +...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence 445678888888999999999999999987654332 367888899999999999999999999876433 56677777
Q ss_pred HHHHHccCCHHHHHHHHH
Q 045814 311 IHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~ 328 (427)
...+...|+...+..-++
T Consensus 113 g~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHHcCChHhHhhCHH
Confidence 788888887655554333
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.53 E-value=0.004 Score=57.16 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=71.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 355 (427)
...+...|++++|+..|+++.+.... +...|..+..+|.+.|++++|+..++++..... .+...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence 45566788888888888888877544 666777888888888888888888888887642 2566777788888888888
Q ss_pred HHHHHHHHHHHHC
Q 045814 356 EEAKRLHKEMLDK 368 (427)
Q Consensus 356 ~~a~~~~~~m~~~ 368 (427)
++|...|+...+.
T Consensus 87 ~eA~~~~~~al~l 99 (356)
T PLN03088 87 QTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888888875
No 167
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.026 Score=50.09 Aligned_cols=197 Identities=10% Similarity=0.112 Sum_probs=108.1
Q ss_pred HHHHHHcCChHHHHHHHHhc-------CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 045814 113 FDSLVEARAFKVAMDFLDST-------GFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~-------~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 184 (427)
...|-..|++++|.+.|.+. +...+ ...|.....+|.+. ++++|.+. |...+..|.
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~---------------~~~A~~~y~ 105 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC---------------YEKAIEIYR 105 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH---------------HHHHHHHHH
Confidence 45566777777777776642 10000 11222223333222 44444444 444556677
Q ss_pred HcCChhHHHHHHHHHHhcchhHHHHHhc-CChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814 185 KIDRTDLVWKLYHDLIESGYLIQAFCND-GKVSEGYELLRQVLE----DGLV-PENTAFNKLISRFCEKKNFGRVSELLH 258 (427)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~ 258 (427)
..|++..|-+.+..+ ...|-.. |++++|++.|++..+ .+.. .-...+..+...+.+.|++++|.++|+
T Consensus 106 ~~G~~~~aA~~~~~l------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e 179 (282)
T PF14938_consen 106 EAGRFSQAAKCLKEL------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE 179 (282)
T ss_dssp HCT-HHHHHHHHHHH------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred hcCcHHHHHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 778877777766654 3456666 788888888877654 2311 123456777888999999999999999
Q ss_pred HHhhCCCCC-----CHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC--hhhHHHHHHHHHcc--CCHHHHHHH
Q 045814 259 TMVARNRAP-----DNF-TYEEVINGLCKSRKRLEAYRVFNDLKERG--YVPD--TVMYTTVIHGLCKM--GWLGDARKM 326 (427)
Q Consensus 259 ~m~~~~~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~--g~~~~a~~~ 326 (427)
+........ +.. .|-..+-.+...||+..|.+.|++..... +..+ ......||.+|-.. ..++.+..-
T Consensus 180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE 259 (282)
T ss_dssp HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 887754322 221 22233345566789999999999886542 2211 23455566666432 224455555
Q ss_pred HHHHH
Q 045814 327 WFEMI 331 (427)
Q Consensus 327 ~~~m~ 331 (427)
|+.+.
T Consensus 260 ~d~~~ 264 (282)
T PF14938_consen 260 YDSIS 264 (282)
T ss_dssp HTTSS
T ss_pred HcccC
Confidence 55443
No 168
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00018 Score=50.72 Aligned_cols=47 Identities=13% Similarity=0.164 Sum_probs=19.2
Q ss_pred CChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHH
Q 045814 283 RKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFE 329 (427)
Q Consensus 283 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (427)
|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444443221 1222223344444444444444444444
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.47 E-value=0.0037 Score=55.29 Aligned_cols=129 Identities=11% Similarity=0.158 Sum_probs=63.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK-SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (427)
+|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555555555666666666655332 1122233322222122 34444466666665544 222445555555666
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 315 CKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
...|+.+.|..+|++.... +.++. ..|...+..=.+.|+++.+..+.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544 22221 2556666655566666666666655554
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.45 E-value=0.077 Score=47.62 Aligned_cols=86 Identities=17% Similarity=0.265 Sum_probs=70.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 383 (427)
..+.+..|.-+...|+...|.++-.+. + .|+..-|...+.+++..++|++-.++... +-++..|...+.+
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence 346666778888899998888886654 3 37888999999999999999988876543 2267899999999
Q ss_pred HHhcCCHHHHHHHHHH
Q 045814 384 LCLHGRTDEAYHLFEE 399 (427)
Q Consensus 384 ~~~~g~~~~A~~~~~~ 399 (427)
|.+.|+..+|..+...
T Consensus 247 ~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHCCCHHHHHHHHHh
Confidence 9999999999999887
No 171
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.44 E-value=0.004 Score=50.49 Aligned_cols=94 Identities=14% Similarity=0.044 Sum_probs=56.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 347 (427)
..|..+...+...|++++|...|++.......+ ...+|..+...+...|+.++|+..+++..... +....++..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence 455566666667777777777777776543222 12366667777777777777777777776652 122344555555
Q ss_pred HHh-------hcCCHHHHHHHHHH
Q 045814 348 GYC-------RIDNLEEAKRLHKE 364 (427)
Q Consensus 348 ~~~-------~~g~~~~a~~~~~~ 364 (427)
.+. ..|+++.|...+++
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 555 56666655544443
No 172
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.038 Score=52.98 Aligned_cols=213 Identities=18% Similarity=0.185 Sum_probs=125.5
Q ss_pred hHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCcCHhhHHHHHH----------HHHHcCChh
Q 045814 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM-GVFGSIKTWNSALL----------GCIKIDRTD 190 (427)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~----------~~~~~~~~~ 190 (427)
+++|.++.+. .|.+..|..|.......-.++.|+..|-+.... |++ ....|-. .-+--|+++
T Consensus 679 ledA~qfiEd---nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 679 LEDAIQFIED---NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred hHHHHHHHhc---CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 4444444433 688899999988888888888888888665432 332 1111111 112357899
Q ss_pred HHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH
Q 045814 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269 (427)
Q Consensus 191 ~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 269 (427)
+|+++|-++-+++..+..+.+.|++-.+.++++.--... -.--...++.+...+.....|++|.+.|..-..
T Consensus 752 eaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------- 824 (1189)
T KOG2041|consen 752 EAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------- 824 (1189)
T ss_pred HhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence 999999999999999999999999999888776421100 001134677777777777778887777754211
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
-...+.++.+..++++.+.+-..+.+ |....-.+..++.+.|.-++|.+.+-+- + .| ...+..|
T Consensus 825 --~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tC 888 (1189)
T KOG2041|consen 825 --TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTC 888 (1189)
T ss_pred --hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHH
Confidence 12234455554555554444443332 3334455556666666666665544321 1 11 1223445
Q ss_pred hhcCCHHHHHHHHHH
Q 045814 350 CRIDNLEEAKRLHKE 364 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~ 364 (427)
....+|.+|.++-+.
T Consensus 889 v~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 889 VELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555554443
No 173
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.41 E-value=0.005 Score=56.52 Aligned_cols=91 Identities=9% Similarity=-0.016 Sum_probs=63.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH
Q 045814 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286 (427)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 286 (427)
..+...|++++|++.|++.+..... +...|..+..+|.+.|++++|+..+++.+.... .+...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 4455677777777777777765543 566677777777777777777777777776642 24556667777777777777
Q ss_pred HHHHHHHHHHhCC
Q 045814 287 EAYRVFNDLKERG 299 (427)
Q Consensus 287 ~a~~~~~~m~~~~ 299 (427)
+|...|++..+..
T Consensus 88 eA~~~~~~al~l~ 100 (356)
T PLN03088 88 TAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHhC
Confidence 7777777776653
No 174
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.40 E-value=0.0048 Score=48.19 Aligned_cols=91 Identities=13% Similarity=-0.012 Sum_probs=52.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 354 (427)
+...+...|++++|.++|+-+...... +..-|..|..++-..|++++|+..|......++ -|...+-.+..++...|+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 333445566666666666666554433 444455555555566666666666666665543 245555556666666666
Q ss_pred HHHHHHHHHHHHH
Q 045814 355 LEEAKRLHKEMLD 367 (427)
Q Consensus 355 ~~~a~~~~~~m~~ 367 (427)
.+.|.+.|+..+.
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
No 175
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.38 E-value=0.016 Score=55.81 Aligned_cols=135 Identities=10% Similarity=-0.063 Sum_probs=71.9
Q ss_pred CCCHhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--------CCHHHHHHHHHHHHH
Q 045814 266 APDNFTYEEVINGLCKS-----RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM--------GWLGDARKMWFEMIH 332 (427)
Q Consensus 266 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~ 332 (427)
..+...|...+.+.... +....|..+|++..+.... ....|..+..++... .+...+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 44556666666553321 2245666666666665322 223333333222211 112233333333222
Q ss_pred c-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 333 K-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 333 ~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
. ....+...|..+.-.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.+++....
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2 122234556555555555677777777777777653 56667777777777777777777777776653
No 176
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.34 E-value=0.046 Score=47.12 Aligned_cols=187 Identities=14% Similarity=0.099 Sum_probs=102.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216 (427)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~ 216 (427)
++..+-.....+.+.|++++|.+.|+.+...-..+ .....+.+ .++.++.+.++++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l-----------------------~la~ayy~~~~y~ 86 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQL-----------------------DLIYAYYKNADLP 86 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHH-----------------------HHHHHHHhcCCHH
Confidence 33333344555567889999999998888753332 22221111 1344555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c---------------CC---hhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 045814 217 EGYELLRQVLEDGLVPENTAFNKLISRFCE--K---------------KN---FGRVSELLHTMVARNRAPDNFTYEEVI 276 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---------------~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll 276 (427)
+|...+++..+..+......|...+.+.+. . .| ..+|++.|+++++.
T Consensus 87 ~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~------------- 153 (243)
T PRK10866 87 LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG------------- 153 (243)
T ss_pred HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-------------
Confidence 666666666654433222333333333321 1 11 12344455555444
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhcCC
Q 045814 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK--GLLPNEYTYNSMIHGYCRIDN 354 (427)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~ 354 (427)
|-...-..+|...+..+... =...--.+..-|.+.|.+..|..-++.+.+. +..........++.+|...|.
T Consensus 154 --yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~ 227 (243)
T PRK10866 154 --YPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL 227 (243)
T ss_pred --CcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence 33333344554444443321 0111123556677888888888888888765 223334566677888888888
Q ss_pred HHHHHHHHHHHH
Q 045814 355 LEEAKRLHKEML 366 (427)
Q Consensus 355 ~~~a~~~~~~m~ 366 (427)
.++|..+...+.
T Consensus 228 ~~~a~~~~~~l~ 239 (243)
T PRK10866 228 NAQADKVAKIIA 239 (243)
T ss_pred hHHHHHHHHHHh
Confidence 888888776654
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.34 E-value=0.018 Score=45.10 Aligned_cols=96 Identities=5% Similarity=-0.123 Sum_probs=80.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
..-.+...+...|++++|..+|+-+...... +..-|-.|.-+|-..|++++|...|......+. -|+..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3344555667899999999999999887533 556677788888999999999999999998864 48899999999999
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 045814 386 LHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~ 403 (427)
..|+.+.|.+-|+.....
T Consensus 115 ~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 999999999999988775
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.30 E-value=0.022 Score=42.83 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=27.3
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 312 HGLCKMGWLGDARKMWFEMIHKGLLPN--EYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
.++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..++++...
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555555555544332 12333344445555555555555555544
No 179
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.28 E-value=0.0074 Score=45.81 Aligned_cols=80 Identities=15% Similarity=0.161 Sum_probs=40.5
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK---------------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
|..++..+|.++++.|+++....+++..-.- ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3456667777777777777777666554211 1224444444444444444444444444444433
Q ss_pred C-CCCCChhhHHHHHH
Q 045814 368 K-GYGETTVTYNTLIA 382 (427)
Q Consensus 368 ~-~~~p~~~~~~~li~ 382 (427)
. +++.+..+|..|++
T Consensus 81 ~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLE 96 (126)
T ss_pred HcCCCCCHHHHHHHHH
Confidence 2 33334444444443
No 180
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.09 Score=44.53 Aligned_cols=144 Identities=9% Similarity=0.066 Sum_probs=98.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH----
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI---- 311 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li---- 311 (427)
+.+.++..+.-.|.+.-....+++.++...+.+....+.+++.-.+.||.+.|...|++..+..-+.|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4556677777778888888888888887767777888888888888888888888888876654444555554443
Q ss_pred -HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814 312 -HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382 (427)
Q Consensus 312 -~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 382 (427)
..|.-.+++..|...+++....+.. |....|.-.-+..-.|+...|.+.++.|... .|...+-++++-
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~ 327 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF 327 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence 3344566777788888777766422 4444454444445568888888888888875 344444444433
No 181
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.25 E-value=0.011 Score=46.52 Aligned_cols=58 Identities=22% Similarity=0.393 Sum_probs=27.8
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 295 (427)
...++..+...|++++|..+...+.... +.|...|..+|.+|...|+..+|.++|+.+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555555555443 224445555555555555555555555544
No 182
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0045 Score=53.18 Aligned_cols=101 Identities=10% Similarity=0.120 Sum_probs=77.5
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (427)
.-..+.+++++|+..|.+.++... -|.+-|..-..+|++.|.++.|++-.+........ -..+|..|..+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 346677889999999998888743 36677778888899999999998888887776332 3458888889999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814 322 DARKMWFEMIHKGLLPNEYTYNSMI 346 (427)
Q Consensus 322 ~a~~~~~~m~~~~~~p~~~~~~~li 346 (427)
+|.+.|++.++. .|+-.+|-.=+
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHH
Confidence 999998888774 66666654433
No 183
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.23 E-value=0.0095 Score=46.98 Aligned_cols=72 Identities=24% Similarity=0.293 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-----KGIFRDVITYN 413 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 413 (427)
+...++..+...|++++|.++++.+.... +-|...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+-.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~ 140 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA 140 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence 45667777888999999999999998874 34788999999999999999999999988754 39999887654
No 184
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.15 E-value=0.32 Score=48.41 Aligned_cols=183 Identities=14% Similarity=0.070 Sum_probs=111.5
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814 80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~ 158 (427)
+-+.+....|+.+.+....-.+ .|..|...+-..|.+.++.++|..++++ .+..|+......+..+|.+-+++.+-.
T Consensus 53 l~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888877766643322 2778888888888888999999998887 466788777777888888887776554
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHHcC-C---------hhHHHHHHHHHHhcc-h---------hHHHHHhcCChhHH
Q 045814 159 CAFSKLKEMGVFGSIKTWNSALLGCIKID-R---------TDLVWKLYHDLIESG-Y---------LIQAFCNDGKVSEG 218 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~~-~---------l~~~~~~~g~~~~a 218 (427)
++--+|.+. .+-....+=++++.....- . ..-|.+.++.+++.+ . ....+...|++++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 444444332 1223444444444433211 1 123555555555543 1 34445567788888
Q ss_pred HHHHH-HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC
Q 045814 219 YELLR-QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265 (427)
Q Consensus 219 ~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 265 (427)
.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++...|.
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 88874 333332222444444556666667777777777777666653
No 185
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0018 Score=43.34 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=25.8
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..|++++|.++|+.+..... -+...+..+..+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34555555555555554421 14444445555555555555555555555543
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.14 E-value=0.0076 Score=51.80 Aligned_cols=102 Identities=21% Similarity=0.218 Sum_probs=78.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356 (427)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (427)
+-+.+.+++.+|+..|.+.++...+ |.+-|..-..+|.+.|.++.|++=.+..+..+.. ...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence 3466788899999999988887655 7777888888889999988888888887775321 3568888888888899999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814 357 EAKRLHKEMLDKGYGETTVTYNTLIA 382 (427)
Q Consensus 357 ~a~~~~~~m~~~~~~p~~~~~~~li~ 382 (427)
+|.+.|++.++ +.|+-.+|..=+.
T Consensus 167 ~A~~aykKaLe--ldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALE--LDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence 99988888876 4567666654444
No 187
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.12 E-value=0.064 Score=44.95 Aligned_cols=176 Identities=11% Similarity=0.099 Sum_probs=83.7
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLV--PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
.+...|++++|.+.|+.+...... --....-.++.++.+.|++++|...+++..+.-+.....-+...+.+.+.....
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~ 93 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI 93 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence 345667777777777777654221 123344556667777777777777777776653322222222222222211111
Q ss_pred HHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 362 (427)
.... ........ -...+..++.-|=......+|...+..+... + -. .--.+...|.+.|.+..|..-+
T Consensus 94 ~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-l--a~-~e~~ia~~Y~~~~~y~aA~~r~ 164 (203)
T PF13525_consen 94 PGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-L--AE-HELYIARFYYKRGKYKAAIIRF 164 (203)
T ss_dssp HHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-H--HH-HHHHHHHHHHCTT-HHHHHHHH
T ss_pred ccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-H--HH-HHHHHHHHHHHcccHHHHHHHH
Confidence 0000 00000000 0113334444444455555555555444332 0 00 1122456677888888888888
Q ss_pred HHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHH
Q 045814 363 KEMLDKGYGET----TVTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 363 ~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 394 (427)
+.+++. -|+ ....-.++.+|.+.|..+.|.
T Consensus 165 ~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 165 QYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888775 123 234566677777777776443
No 188
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.10 E-value=0.0017 Score=43.50 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=8.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHH
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
.+..+|.+.|++++|.++++.+.
T Consensus 30 ~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 30 LLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHTT-HHHHHHHHHCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 33334444444444444444333
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.10 E-value=0.031 Score=42.02 Aligned_cols=89 Identities=18% Similarity=0.135 Sum_probs=45.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcC
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLVPE--NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP--DNFTYEEVINGLCKSR 283 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~ 283 (427)
++-..|+.++|+.+|++....|...+ ...+-.+.+.+...|++++|..++++........ +......+.-++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34455666666666666666554432 2244445556666666666666666655442110 1111122223445556
Q ss_pred ChHHHHHHHHHHH
Q 045814 284 KRLEAYRVFNDLK 296 (427)
Q Consensus 284 ~~~~a~~~~~~m~ 296 (427)
+.++|...+-...
T Consensus 90 r~~eAl~~~l~~l 102 (120)
T PF12688_consen 90 RPKEALEWLLEAL 102 (120)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666555444
No 190
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.08 E-value=0.047 Score=52.59 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcC--------ChHHHHHHHHH
Q 045814 229 GLVPENTAFNKLISRFCEK-----KNFGRVSELLHTMVARNRAPD-NFTYEEVINGLCKSR--------KRLEAYRVFND 294 (427)
Q Consensus 229 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~--------~~~~a~~~~~~ 294 (427)
+...+...|...+.+.... ++...|..+|++..+.. |+ ...|..+..++.... +...+.+...+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 4456788899888875442 23778999999999884 44 345554444333221 22334444444
Q ss_pred HHhC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 295 LKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373 (427)
Q Consensus 295 m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 373 (427)
.... ....+...|.++.-.....|++++|...++++...+ |+...|..+...+...|+.++|.+.+++.... .|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence 3332 123355678877777777899999999999999975 68889999999999999999999999998875 344
Q ss_pred hhhH
Q 045814 374 TVTY 377 (427)
Q Consensus 374 ~~~~ 377 (427)
..+|
T Consensus 486 ~pt~ 489 (517)
T PRK10153 486 ENTL 489 (517)
T ss_pred CchH
Confidence 4444
No 191
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.07 E-value=0.015 Score=52.22 Aligned_cols=133 Identities=13% Similarity=0.004 Sum_probs=83.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH----HhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDL----KERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLL-PNE 339 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~ 339 (427)
..|..|.+.|.-.|+++.|+...+.= .+.|-+. ....+..+..++.-.|+++.|.+.|+..... |-. ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777778888887665432 2333221 2346677777888888888888887765432 211 122
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDK-----GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
...-+|...|.-..++++|+.++.+=... +..-....|-+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 34455667777777888888777643321 1112456677888888888888888877765544
No 192
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.05 E-value=0.075 Score=44.54 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=103.0
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814 239 KLISRFCEKKNFGRVSELLHTMVARNRAP--DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316 (427)
Q Consensus 239 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (427)
.....+...|++.+|.+.|+.+....+.. -....-.+..++.+.|++++|...+++..+.-..-....+...+.+.+.
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34556677899999999999998764321 2245567788899999999999999998765322122233333333322
Q ss_pred cCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814 317 MGWLGDARKMWFEMIHKGLL---PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (427)
-....... ....... --...+..++.-|-...-..+|...+..+.+. =...--.+...|.+.|.+..|
T Consensus 90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence 11111110 0000000 01124566666677777777777776666543 111122356789999999999
Q ss_pred HHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCCC
Q 045814 394 YHLFEEMAQKGIFRDV----ITYNTLIQGYCKEGKI 425 (427)
Q Consensus 394 ~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~ 425 (427)
..-++.+.+. -|+. .....++.+|.+.|..
T Consensus 161 ~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 161 IIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp HHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCCh
Confidence 9999999986 3333 4567888888887753
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.01 E-value=0.27 Score=47.87 Aligned_cols=292 Identities=15% Similarity=0.083 Sum_probs=160.3
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcC---ChHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChhHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR---AFKVAMDFLDSTGF-SPNPNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~ 158 (427)
.+.+..|.++..|+....+. ....|......+.+.. +-+.+..+-++.+. .-...+|..+.+..-..|+++-|.
T Consensus 450 r~~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~ 527 (829)
T KOG2280|consen 450 RHLYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELAR 527 (829)
T ss_pred cchhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHH
Confidence 45677788888887432111 1455555555555542 22334444445333 233445555555555667777777
Q ss_pred HHHHHHHhcCCC----cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------------------------hh
Q 045814 159 CAFSKLKEMGVF----GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------------------------YL 205 (427)
Q Consensus 159 ~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~l 205 (427)
.+++.=...+.. .+..-+...+.-+.+.|+.+....++-.+...- .+
T Consensus 528 kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l 607 (829)
T KOG2280|consen 528 KLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATL 607 (829)
T ss_pred HHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhh
Confidence 666533222211 122334455555556666655555554444331 11
Q ss_pred HHHHHhcCChhHHHHHHHHH-H----HCCCCCCHHHHHHHHHHHHccCChhHHHH----------HHHHHhh-CCCCCCH
Q 045814 206 IQAFCNDGKVSEGYELLRQV-L----EDGLVPENTAFNKLISRFCEKKNFGRVSE----------LLHTMVA-RNRAPDN 269 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~-~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~----------~~~~m~~-~~~~~~~ 269 (427)
-..|-...+...+-.+..+- . ..|..| ......+.+.+.....-..+ +.+.+.. .|.....
T Consensus 608 ~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~---~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~d 684 (829)
T KOG2280|consen 608 YDFYNQDDNHQALASFHLQASYAAETIEGRIP---ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVD 684 (829)
T ss_pred hhhhhcccchhhhhhhhhhhhhhhhhhcccch---hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 11222222222211111111 0 012222 23333444444433221111 1112211 2333344
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
.+.+--+.-+...|+..+|.++-.+.+ .||-..|-.-+.+++..+++++.+++-+.+.. +.-|.-++.+|
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c 754 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC 754 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence 456666677778889999988877765 36888999899999999999888777655432 34577788999
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE 398 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 398 (427)
.+.|+.++|.+++-+.... .-...+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence 9999999999988765332 156778888898888877543
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.98 E-value=0.0043 Score=41.58 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=45.3
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 045814 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID-RTDLVWKLYHDLIE 201 (427)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~ 201 (427)
++.+|..+...+...|++++|+..|++..+.... +...|..+..++...| ++++|.+.++..++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3556777777777788888888888777776433 5667777777777777 57777777766554
No 195
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.97 E-value=0.046 Score=52.03 Aligned_cols=210 Identities=9% Similarity=0.004 Sum_probs=98.5
Q ss_pred HHHHHHHHhcCChh--HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814 142 ELYIQCLCESGLIE--EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219 (427)
Q Consensus 142 ~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (427)
+..=.+|.+-.+.. +..--++++++.|-.|+.... ...++-.|.+.+|-++|.+--..+..++.|.....++.|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ 678 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ 678 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence 33334454444322 233334566677777766433 3345556666666666665444444444444444444443
Q ss_pred HHHH------------HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH------HHhhCCC---CCCHhhHHHHHHH
Q 045814 220 ELLR------------QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH------TMVARNR---APDNFTYEEVING 278 (427)
Q Consensus 220 ~~~~------------~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------~m~~~~~---~~~~~~~~~ll~~ 278 (427)
+++. +-.+ ..-+..-=.+....+..+|+.++|..+.- .+.+-+. ..+..+...+...
T Consensus 679 E~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~y 756 (1081)
T KOG1538|consen 679 EFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATY 756 (1081)
T ss_pred HHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 3332 1110 00000011122334445566655555432 1111111 1122334444444
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHH
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT-----------YNSMIH 347 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------~~~li~ 347 (427)
+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-+...+. .||++. |...-+
T Consensus 757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538|consen 757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHH
Confidence 44555666677777666432 23556667777777777776665443 333321 222334
Q ss_pred HHhhcCCHHHHHHHHHHHHH
Q 045814 348 GYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~ 367 (427)
+|-++|+-.+|.++++++..
T Consensus 826 AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHhcchHHHHHHHHHhhh
Confidence 45555555555555555543
No 196
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.083 Score=45.79 Aligned_cols=99 Identities=12% Similarity=0.057 Sum_probs=45.4
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 045814 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI---DNLEEAKRLHKEMLDKGYGETTVTYNT 379 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~ 379 (427)
|...|-.|..+|...|+.+.|..-|.+..+.. .++...+..+..++... .+-.++..+|+++...+.. |+.....
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 44455555555555555555555555554431 11233333333322211 1234455555555544221 3444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 380 LIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
|...+...|++.+|...|+.|.+.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc
Confidence 444555555555555555555543
No 197
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.92 E-value=0.0047 Score=40.83 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=18.7
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 330 (427)
.+.|++++|...|+.+.+.... +...+..+..++.+.|++++|...|+++
T Consensus 8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444444444444333211 2333333333344444444444444433
No 198
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.91 E-value=0.014 Score=44.30 Aligned_cols=49 Identities=14% Similarity=0.076 Sum_probs=22.9
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHH
Q 045814 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGY 419 (427)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~ 419 (427)
.|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++-+
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 444444444444444444444444444444333 4444444444444433
No 199
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.84 E-value=0.0062 Score=40.23 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=24.2
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045814 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199 (427)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 199 (427)
..+.+.|++++|...|+.+.+.... +...+..+..++...|++++|...|+++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444455555555555555544322 3444444444444444444444444443
No 200
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.79 E-value=0.57 Score=45.45 Aligned_cols=131 Identities=8% Similarity=-0.014 Sum_probs=70.5
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChhHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN----PNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~ 158 (427)
.+.++.|.+.+-.+-++ ..-+....+.|++-.+.++++.-|...| ..+|+.+...++....+++|.
T Consensus 747 ~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~ 816 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA 816 (1189)
T ss_pred hcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666655544221 2235666777788777777775332222 335666666666666666666
Q ss_pred HHHHHHHh---------------------cCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814 159 CAFSKLKE---------------------MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217 (427)
Q Consensus 159 ~~~~~m~~---------------------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~ 217 (427)
+.|..-.. ..++-+....-.+..++.+.|..++|.+.|-+-......+..|...++|.+
T Consensus 817 ~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~ 896 (1189)
T KOG2041|consen 817 KYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGE 896 (1189)
T ss_pred HHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 55543211 112224444455555666666666665555544444445555555556655
Q ss_pred HHHHHH
Q 045814 218 GYELLR 223 (427)
Q Consensus 218 a~~~~~ 223 (427)
|.++-+
T Consensus 897 avelaq 902 (1189)
T KOG2041|consen 897 AVELAQ 902 (1189)
T ss_pred HHHHHH
Confidence 555543
No 201
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.77 E-value=0.034 Score=48.41 Aligned_cols=96 Identities=9% Similarity=-0.018 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Q 045814 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPD--TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL--LPNEYTYNSMIH 347 (427)
Q Consensus 272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~ 347 (427)
|...+..+.+.|++++|...|+.+.+.-.... ...+-.+..+|...|++++|...|+.+.+.-. ......+-.+..
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333444555555555555544421100 12334444455555555555555555543310 001122222333
Q ss_pred HHhhcCCHHHHHHHHHHHHH
Q 045814 348 GYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~ 367 (427)
.+...|+.++|..+|+.+.+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 44444555555555554444
No 202
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.74 E-value=0.007 Score=40.53 Aligned_cols=59 Identities=15% Similarity=0.146 Sum_probs=23.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-NLEEAKRLHKEM 365 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m 365 (427)
+|..+...+...|++++|+..|++..+... -+...|..+..+|...| ++++|.+.++..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 333344444444444444444444443321 12333333444444444 344444444433
No 203
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.13 Score=44.58 Aligned_cols=112 Identities=11% Similarity=0.032 Sum_probs=75.5
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045814 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM---GWLGDARKMWFEMIHKGLLPNEYTYN 343 (427)
Q Consensus 267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~ 343 (427)
-|...|-.|...|...|+.+.|..-|....+...+ +...+..+..++... ....++..+++++...+.. |..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence 36778888888888888888888888887765332 445555555544432 2356788888888876432 566666
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 382 (427)
.+...+...|++.+|...|+.|.+.. |....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence 66777888888888888888888762 33344444444
No 204
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.68 E-value=0.48 Score=43.19 Aligned_cols=166 Identities=15% Similarity=0.090 Sum_probs=94.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChhhHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARN---RAPDNFTYEEVINGLCK---SRKRLEAYRVFNDLKERGYVPDTVMYTT 309 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (427)
+...++-.|....+++..+++.+.+.... +.-....--...-++.+ .|+.++|++++..+....-.++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34455556777888888888888776541 11111122233344455 7888888888888655555567777777
Q ss_pred HHHHHHc---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----HHHHHHHH---H-HHHHCCC--
Q 045814 310 VIHGLCK---------MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN----LEEAKRLH---K-EMLDKGY-- 370 (427)
Q Consensus 310 li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~~a~~~~---~-~m~~~~~-- 370 (427)
+...|-. ....++|...|.+.-+. .||.++--.+...+.-.|. -.+..++- . .+.+.|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 7766542 12366777777766554 2444332222222222232 11222222 1 1112222
Q ss_pred -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 371 -GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 371 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..|--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 234556677888888888999988888888865
No 205
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.82 Score=44.75 Aligned_cols=281 Identities=15% Similarity=0.179 Sum_probs=166.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSP--NPNSLELYIQCLCESGLI--EEAFCAFSKLKEMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 183 (427)
+-..+++-+...+.+..|.++-+-++.+- +...|....+.+.+..+. +++.+..++=...... ...+|..+.+-.
T Consensus 439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~A 517 (829)
T KOG2280|consen 439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRA 517 (829)
T ss_pred chhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHH
Confidence 34567888888999999998877655322 245566666666665322 2333333322222233 455677778877
Q ss_pred HHcCChhHHHHHHHHHHhc-------------chhHHHHHhcCChhHHHHHHHHHHHCCCC----------C-CHHHHHH
Q 045814 184 IKIDRTDLVWKLYHDLIES-------------GYLIQAFCNDGKVSEGYELLRQVLEDGLV----------P-ENTAFNK 239 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~-~~~~~~~ 239 (427)
...|+.+.|..+++.=... ...+.-+...|+.+....++..+...-.. | ....|.-
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~ 597 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ 597 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence 8899999998887543222 34666777888888888877776543111 1 1112222
Q ss_pred HHH--------HHHccCChhHHHHHHH--HHhh----CCCCCCHhhHHHHHHHHHhcCChH----------HHHHHHHHH
Q 045814 240 LIS--------RFCEKKNFGRVSELLH--TMVA----RNRAPDNFTYEEVINGLCKSRKRL----------EAYRVFNDL 295 (427)
Q Consensus 240 li~--------~~~~~~~~~~a~~~~~--~m~~----~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m 295 (427)
+++ .+...++...+...|. ...+ .+..|+ .....+.+.+..... +-+++.+.+
T Consensus 598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L 674 (829)
T KOG2280|consen 598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL 674 (829)
T ss_pred HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 221 0111222222222221 1000 122222 223334444433311 112222333
Q ss_pred H-hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh
Q 045814 296 K-ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374 (427)
Q Consensus 296 ~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 374 (427)
. +.|.....-+.+--+.-+...|+..+|.++-.+.+ -||...|-.=+.+++..+++++-+++-+.+. ++
T Consensus 675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sP 744 (829)
T KOG2280|consen 675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SP 744 (829)
T ss_pred HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CC
Confidence 2 22433444566667777888899999998877654 4688889888999999999988777666543 36
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.-|.-.+.+|.+.|+.++|.+++-+...
T Consensus 745 IGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 745 IGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred CCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 7788899999999999999999876543
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.53 E-value=0.057 Score=47.04 Aligned_cols=98 Identities=12% Similarity=0.006 Sum_probs=48.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--PDTVMYTTVI 311 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li 311 (427)
.|...+..+.+.|++++|...|+.+.+..+... ...+-.+...|...|++++|...|..+.+.-.. .....+-.+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444445566666666666555532111 134445555556666666666666665543111 0122333334
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 045814 312 HGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
..+...|+.++|..+|+++.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 4455556666666666655554
No 207
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.51 E-value=0.54 Score=41.60 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=125.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH-------HcC-ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHH
Q 045814 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-------KID-RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE 220 (427)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~-~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 220 (427)
.+.|+++.|..++.+........++.....|...|. ..+ +++.|..++++. .+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-------------------~~ 64 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-------------------YD 64 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-------------------HH
Confidence 456788888888887765431223333333333322 233 555555554433 33
Q ss_pred HHHHH-HHCCCCCC-----HHHHHHHHHHHHccCChh---HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814 221 LLRQV-LEDGLVPE-----NTAFNKLISRFCEKKNFG---RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 221 ~~~~~-~~~~~~~~-----~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
+++.. ......|+ ..++..++.+|...+..+ +|.++++.+...... ...++-.-++.+.+.++.+++.++
T Consensus 65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHH
Confidence 33221 11112222 246777888888877744 566677666554322 245565667777778999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHH---HccCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HH---HHHhhcCC------HHH
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGL---CKMGWLGDARKMWFEMIHKGLLPNEY-TYNS-MI---HGYCRIDN------LEE 357 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-li---~~~~~~g~------~~~ 357 (427)
+.+|...-.. ....+..++..+ ... ....|...++.+....+.|... .... ++ -...+.++ ++.
T Consensus 144 L~~mi~~~~~-~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~ 221 (278)
T PF08631_consen 144 LMRMIRSVDH-SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIES 221 (278)
T ss_pred HHHHHHhccc-ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHH
Confidence 9999876221 334555555555 333 3456777777777665665553 1111 11 11222222 444
Q ss_pred HHHHHHHHHHC-CCCCChhhHHHHHH-------HHHhcCCHHHHHHHHHHHH
Q 045814 358 AKRLHKEMLDK-GYGETTVTYNTLIA-------GLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 358 a~~~~~~m~~~-~~~p~~~~~~~li~-------~~~~~g~~~~A~~~~~~m~ 401 (427)
..++++.+.+. +.+.+..+-.++.. .+.+.+++++|.+.|+-..
T Consensus 222 l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 222 LEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 44555543332 33334433333322 3456889999999988543
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=96.42 E-value=0.13 Score=40.58 Aligned_cols=88 Identities=7% Similarity=-0.106 Sum_probs=58.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 358 (427)
+...|++++|..+|.-+.-.+.. +..-|..|..++-..+++++|...|......+. -|...+-....+|...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence 44677888888887777665443 444555566666667778888877777665543 2444455566777777888888
Q ss_pred HHHHHHHHHC
Q 045814 359 KRLHKEMLDK 368 (427)
Q Consensus 359 ~~~~~~m~~~ 368 (427)
...|+...+.
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 8877777663
No 209
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.41 E-value=0.025 Score=50.77 Aligned_cols=131 Identities=8% Similarity=-0.032 Sum_probs=83.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHh----hCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHH----hCCC-CCChh
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMV----ARNRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLK----ERGY-VPDTV 305 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~ 305 (427)
.|..|-+.|.-.|++++|+...+.-. +.|-. .....++.+.+++.-.|+++.|.+.|.... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 56667777777788888877665322 22221 123567778888888888888888777643 2222 12344
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHK----G-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
+..+|..+|.-..++++|+.++.+-... + ..-....+-+|..+|...|..++|..+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5666777777777788888877654322 1 11234567778888888888888877665543
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.38 E-value=0.39 Score=38.59 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=68.4
Q ss_pred CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcC
Q 045814 134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG 213 (427)
Q Consensus 134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g 213 (427)
.-|++..--.|..+..+.|+..+|...|++...--..-|....-.+.++. ...+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aq--------------------------fa~~ 138 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQ--------------------------FAIQ 138 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHH--------------------------Hhhc
Confidence 34555555555556666666666666666554322223333333333333 3444
Q ss_pred ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 045814 214 KVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF 292 (427)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 292 (427)
++..|...++.+.+.... -++.+.-.+...+...|++.+|+..|+.....-..|... ......+.+.|+.+++..-+
T Consensus 139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar--~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR--IYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH--HHHHHHHHHhcchhHHHHHH
Confidence 555555555555443210 122244455667777777777777777777663333322 22333445666665554444
Q ss_pred HHH
Q 045814 293 NDL 295 (427)
Q Consensus 293 ~~m 295 (427)
..+
T Consensus 217 ~~v 219 (251)
T COG4700 217 VAV 219 (251)
T ss_pred HHH
Confidence 333
No 211
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.37 E-value=0.028 Score=47.93 Aligned_cols=89 Identities=9% Similarity=-0.006 Sum_probs=64.5
Q ss_pred CCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----------------HHHHH
Q 045814 301 VPDTVMYTTVIHGLCKM-----GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN----------------LEEAK 359 (427)
Q Consensus 301 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------------~~~a~ 359 (427)
+-|-.+|..++..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+-.- -+-+.
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 34778888888887654 5678888888999999999999999999998765431 23355
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389 (427)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (427)
.++++|...|+.||..+-..|+.++.+.+-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 666666666666666666666666655554
No 212
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.36 E-value=0.061 Score=50.61 Aligned_cols=155 Identities=12% Similarity=0.110 Sum_probs=93.3
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814 82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 161 (427)
-+++.+.+.+....-.--..+ +..-.+.++..+-+.|..+.|+++... +. .-.....+.|+++.|.++-
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D------~~---~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD------PD---HRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-------HH---HHHHHHHHCT-HHHHHHHC
T ss_pred HcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC------hH---HHhHHHHhcCCHHHHHHHH
Confidence 456666666655421111111 244577777777788888888776432 21 2244555667777777665
Q ss_pred HHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045814 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI 241 (427)
Q Consensus 162 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 241 (427)
++. .+...|..|.+...+.|+++-|++.|.+....+.|+-.|.-.|+.+...++.+.....| -++...
T Consensus 342 ~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af 409 (443)
T PF04053_consen 342 KEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAF 409 (443)
T ss_dssp CCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred Hhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHH
Confidence 443 25667888888888888888888888888777777778888888777777776666654 255666
Q ss_pred HHHHccCChhHHHHHHHH
Q 045814 242 SRFCEKKNFGRVSELLHT 259 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~ 259 (427)
.++.-.|+.++..+++.+
T Consensus 410 ~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 410 QAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHT-HHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 666667888887777764
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.55 Score=39.99 Aligned_cols=140 Identities=14% Similarity=0.061 Sum_probs=105.4
Q ss_pred chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHH-----H
Q 045814 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI-----N 277 (427)
Q Consensus 203 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~ 277 (427)
..++..+.-.|.+.-.+..+.+.++.....++.....|.+.-.+.||.+.|...|+...+..-..|..+++.++ .
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34666666778888889999999988777788899999999999999999999999877654455555555544 3
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345 (427)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 345 (427)
.|.-.+++..|...|.+....... |+...|.-.-+..-.|+...|.+.++.|... .|...+-+++
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 455678889999999888776543 5555555555555679999999999999986 4555444433
No 214
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.34 E-value=0.013 Score=40.38 Aligned_cols=61 Identities=23% Similarity=0.294 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHC----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDK----GY-GET-TVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+|+.+...|...|++++|...|++..+. |- .|+ ..++..+...|...|++++|++++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555666666666666666555432 11 111 3455566666666666666666666544
No 215
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.26 E-value=0.034 Score=37.58 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=21.8
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
|.+.+++++|.++++.+.+.+.. +...|......+.+.|++++|...++...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 33444444444444444433222 333333344444444444444444444443
No 216
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.25 E-value=0.042 Score=37.13 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=32.2
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.|.+.+++++|.++++.+...+. .+...|......+...|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 45556666666666666665532 24555555566666666666666666666654
No 217
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.21 E-value=0.016 Score=39.83 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=33.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHK----GL-LPN-EYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
+|+.+...|...|++++|+..+++..+. |- .|+ ..++..+..+|...|++++|.+++++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666655432 11 111 3345556666666666666666666544
No 218
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.16 E-value=0.13 Score=48.46 Aligned_cols=126 Identities=21% Similarity=0.214 Sum_probs=91.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 045814 74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL 153 (427)
Q Consensus 74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~ 153 (427)
.-+...|...+-++.|+++...-..+ .+...+.|+++.|.++.++.. +...|..|.....+.|+
T Consensus 299 ~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 299 QSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTB
T ss_pred HHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCC
Confidence 44556788888899998887665433 667788999999988866543 77899999999999999
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---hhHHHHHhcCChhHHHHHHHH
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---YLIQAFCNDGKVSEGYELLRQ 224 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~ 224 (427)
++-|++.|++... +..|+-.|.-.|+.+...++.+.....| ....++.-.|+.++..+++.+
T Consensus 363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999987753 6677778888888888888877777554 455566667888777776654
No 219
>PRK15331 chaperone protein SicA; Provisional
Probab=96.15 E-value=0.49 Score=37.45 Aligned_cols=90 Identities=11% Similarity=-0.023 Sum_probs=73.6
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 045814 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 391 (427)
.-+...|++++|..+|.-+...+.. +..-+..|..+|-..+++++|...|......+. -|+..+-....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3345789999999999999887543 455567777788888999999999998876654 36667777889999999999
Q ss_pred HHHHHHHHHHHC
Q 045814 392 EAYHLFEEMAQK 403 (427)
Q Consensus 392 ~A~~~~~~m~~~ 403 (427)
.|...|+...+.
T Consensus 123 ~A~~~f~~a~~~ 134 (165)
T PRK15331 123 KARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHhC
Confidence 999999998884
No 220
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.12 E-value=1.1 Score=41.27 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=113.9
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY-NSMIH 347 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~ 347 (427)
.+|...++...+..-.+.|..+|-+..+.| +.+++..++++|..++. |+..-|..+|+--... .||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 467778888888899999999999999998 66888999999998874 7788999999876554 4555544 45677
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814 348 GYCRIDNLEEAKRLHKEMLDKGYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 421 (427)
.+...++-+.|..+|+...+. +..+ ...|..+|+--..-|+...|..+-++|.+. .|...+-..+.+.|.-
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i 547 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI 547 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence 788899999999999966543 2223 578999999999999999999888888873 5565555555555543
No 221
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.10 E-value=0.24 Score=47.42 Aligned_cols=199 Identities=13% Similarity=0.090 Sum_probs=111.3
Q ss_pred cCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH-------H--hc-C
Q 045814 99 HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL-------K--EM-G 168 (427)
Q Consensus 99 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m-------~--~~-g 168 (427)
+.|-.|+.... .+.++-.|++.+|-++|.+.|.. |-.+..|.....++.|.++...- . +. .
T Consensus 628 ~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~ 698 (1081)
T KOG1538|consen 628 KRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD 698 (1081)
T ss_pred hcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 44566776543 45677889999999999887743 22233444444444444433211 0 00 0
Q ss_pred CCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 045814 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248 (427)
Q Consensus 169 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 248 (427)
-..++.-=.+....+...|+.++|.. .+...|-.+.+.++-+++-. .+..+...+...+-+..
T Consensus 699 WAr~~kePkaAAEmLiSaGe~~KAi~-------------i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~ 761 (1081)
T KOG1538|consen 699 WARNIKEPKAAAEMLISAGEHVKAIE-------------ICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLD 761 (1081)
T ss_pred HhhhcCCcHHHHHHhhcccchhhhhh-------------hhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhcc
Confidence 00000011112223333344433332 23344444444444443332 24445555555566677
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHcc
Q 045814 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV-----------MYTTVIHGLCKM 317 (427)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~ 317 (427)
.+.-|-++|..|-+. ..+++.....+++++|..+-++..+. .||+. -|.-.-.+|.++
T Consensus 762 ~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 762 SPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 788888888877432 35677778889999999888877654 33332 233445678888
Q ss_pred CCHHHHHHHHHHHHHcC
Q 045814 318 GWLGDARKMWFEMIHKG 334 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~ 334 (427)
|+-.+|..+++++....
T Consensus 831 Gr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 831 GRQREAVQVLEQLTNNA 847 (1081)
T ss_pred cchHHHHHHHHHhhhhh
Confidence 99999999998886653
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.05 E-value=0.5 Score=36.75 Aligned_cols=84 Identities=17% Similarity=0.048 Sum_probs=37.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
.++..+.+.+.+..+..+++.+...+. .+...++.++..|++.+ .++....++. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 344444444455555555555544442 34445555555555432 2233333321 012222333445555555
Q ss_pred CHHHHHHHHHHH
Q 045814 354 NLEEAKRLHKEM 365 (427)
Q Consensus 354 ~~~~a~~~~~~m 365 (427)
-++++..++..+
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555444
No 223
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.96 E-value=0.66 Score=37.35 Aligned_cols=99 Identities=10% Similarity=0.092 Sum_probs=47.1
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 045814 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG---LLPNEYTYN 343 (427)
Q Consensus 267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~ 343 (427)
|++..--.|..+....|+..+|...|.+...--+.-|....-.+.++....+++..|...++++.+.. -.|| +.-
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 44444444555555555555555555554433233344444444455555555555555555554432 1122 223
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
.+.+.|...|....|+.-|+....
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~ 188 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAIS 188 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHH
Confidence 334445555555555555555544
No 224
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=1.3 Score=40.36 Aligned_cols=170 Identities=15% Similarity=0.028 Sum_probs=94.4
Q ss_pred HHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCChhhHH---HH-------
Q 045814 243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING--LCKSRKRLEAYRVFNDLKERGYVPDTVMYT---TV------- 310 (427)
Q Consensus 243 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l------- 310 (427)
++.-.|++++|..+-....+.+. ...+...+++ +.-.++.+.|...|++.+..+ |+...-. .+
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~ 252 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK 252 (486)
T ss_pred hhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence 34456777777776665555431 2233444433 334567777777777776653 2322111 11
Q ss_pred ---HHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh-hHHHH--H
Q 045814 311 ---IHGLCKMGWLGDARKMWFEMIHK---GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTL--I 381 (427)
Q Consensus 311 ---i~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l--i 381 (427)
..-..+.|++..|.+.|.+.+.. ++.|+...|.....+..+.|+..+|+.-.+...+. |.. +...+ .
T Consensus 253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra 328 (486)
T KOG0550|consen 253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA 328 (486)
T ss_pred HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence 12234667788888888877654 34455566666666677778888888777777664 332 22222 2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHh
Q 045814 382 AGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCK 421 (427)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 421 (427)
.++...++|++|.+-+++..+..-.+ ...|+.-...++-+
T Consensus 329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk 369 (486)
T KOG0550|consen 329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK 369 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence 34445677778877777765542221 23344444444433
No 225
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.82 E-value=0.56 Score=35.39 Aligned_cols=138 Identities=12% Similarity=0.121 Sum_probs=57.0
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229 (427)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 229 (427)
-.|.+++..++..+.... .+..-||.++--....-+.+-..+.++.+-+. .-....|++......+-.+ |
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis~C~NlKrVi~C~~~~---n 83 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDISKCGNLKRVIECYAKR---N 83 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GGG-S-THHHHHHHHHT---T
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCchhhcchHHHHHHHHHh---c
Confidence 346667777777766653 24455555555555555555555544443321 0011222222222222111 0
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
.+.......+......|+.++-.+++..+.+. -+++....-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus 84 --~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 84 --KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred --chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 12233444445555555555555555554432 233444444555555555555555555555555443
No 226
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.75 E-value=0.09 Score=44.98 Aligned_cols=87 Identities=16% Similarity=0.283 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHc-----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----------------ChHHHHHH
Q 045814 233 ENTAFNKLISRFCE-----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR----------------KRLEAYRV 291 (427)
Q Consensus 233 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~~ 291 (427)
|..+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+-. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44455555544432 2334445555556666666666666666665543321 22345666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGLCKMGW 319 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (427)
+++|...|+.||..+-..++.++.+.+.
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 6666666666666666666666666553
No 227
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.73 E-value=1.7 Score=40.22 Aligned_cols=88 Identities=13% Similarity=0.075 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHH----HHHHHHH--HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814 320 LGDARKMWFEMIHKGLLPNEY----TYNSMIH--GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 320 ~~~a~~~~~~m~~~~~~p~~~----~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (427)
+.+-..+-+-+.+.|+.|-.. .-|.+.+ .+...|++.++.-.-.-+.+ +.|++.+|..+.-++....++++|
T Consensus 437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA 514 (549)
T PF07079_consen 437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA 514 (549)
T ss_pred HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence 445555555556667766433 2333333 24456888887766555554 679999999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhHHHH
Q 045814 394 YHLFEEMAQKGIFRDVITYNT 414 (427)
Q Consensus 394 ~~~~~~m~~~g~~p~~~~~~~ 414 (427)
..++..+. |+..++++
T Consensus 515 ~~~l~~LP-----~n~~~~ds 530 (549)
T PF07079_consen 515 WEYLQKLP-----PNERMRDS 530 (549)
T ss_pred HHHHHhCC-----CchhhHHH
Confidence 99998765 56666554
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.72 E-value=0.22 Score=46.14 Aligned_cols=65 Identities=15% Similarity=0.026 Sum_probs=52.5
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP----NSLELYIQCLCESGLIEEAFCAFSKLKEM 167 (427)
Q Consensus 103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 167 (427)
+.+...++.+..+|.+.|++++|+..|++ +.+.|+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34577888888888888999999988887 5666764 35888888888899999999988888774
No 229
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.58 Score=46.33 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=39.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP--NSLELYIQCLCESGLIEEAFCAFSKLK 165 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~ 165 (427)
..-....-++.+.+...++.|..+-+..+..++. .........+-+.|++++|...|-+-.
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 3445566677778888888888887776544442 234444555667788888887775544
No 230
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.50 E-value=0.76 Score=34.71 Aligned_cols=136 Identities=13% Similarity=0.108 Sum_probs=77.5
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHccCCHHH
Q 045814 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM---YTTVIHGLCKMGWLGD 322 (427)
Q Consensus 246 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~ 322 (427)
-.|..++..+++.+...+. +..-+|.+|--....-+-+-..++++.+-+ -.|... .-.++..|+..|.
T Consensus 14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~--- 84 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK--- 84 (161)
T ss_dssp HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc---
Confidence 3577788888887776653 344455555444444444555555555432 233322 1223333333322
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+..-.+..+......|.-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++-+++.+.-+
T Consensus 85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 2334555677778888888888888888753 356788888888899999999999999999888
Q ss_pred CCCC
Q 045814 403 KGIF 406 (427)
Q Consensus 403 ~g~~ 406 (427)
+|++
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8875
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.47 E-value=2.1 Score=39.55 Aligned_cols=132 Identities=16% Similarity=0.230 Sum_probs=102.4
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH-HHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARN-RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY-TTV 310 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l 310 (427)
-..+|...++.-.+..-++.|..+|-+..+.+ ..+++..++++|..++. |++.-|.++|+.-... -||...| +-.
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky 472 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY 472 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence 34578888888888888999999999999988 57888999999988765 7888999999875544 2444433 456
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGLLPN--EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+.-+...++-+.|..+|+..... +..+ ...|..+|..-..-|++..+..+=++|.+.
T Consensus 473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 67777889999999999965543 2222 468999999889999998888877777654
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.40 E-value=0.95 Score=35.18 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=23.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHc
Q 045814 73 PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA 119 (427)
Q Consensus 73 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 119 (427)
+.-+...+...+.+.....+++++... + ..+...++.++..|++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence 333334444445566666666665443 2 24555566666666554
No 233
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.33 E-value=0.38 Score=44.62 Aligned_cols=64 Identities=11% Similarity=-0.034 Sum_probs=48.2
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT----VMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
+...++.+..+|.+.|++++|...|++..+.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45677778888888888888888888877764 342 34777888888888888888888888775
No 234
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=95.27 E-value=2 Score=38.21 Aligned_cols=130 Identities=11% Similarity=0.226 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCC----hhHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCCh
Q 045814 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCE--KKN----FGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~ 285 (427)
+++...+++.|.+.|+.-+..+|-+....... ..+ ..++..+|+.|++..+ .++...+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566778888888888777666664433333 222 4578888899888754 3445566666554 33433
Q ss_pred ----HHHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814 286 ----LEAYRVFNDLKERGYVPDTV--MYTTVIHGLCKMGW--LGDARKMWFEMIHKGLLPNEYTYNSMI 346 (427)
Q Consensus 286 ----~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li 346 (427)
+.++.+|+.+.+.|+..+.. ..+.++..+..... ...+..+++.+.+.|+++....|..+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 45677888888877765433 33333332222222 457888888888888887777666553
No 235
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.11 E-value=3.7 Score=42.72 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=47.2
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEY--TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (427)
.+.+|..+|++++|+.+..++.... +.. +-..|+.-+...++.-+|-++..+.... ..-.+..|++.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence 3556666666666666665553321 211 1245566666777777777777666543 23445566677
Q ss_pred CCHHHHHHHHHHHH
Q 045814 388 GRTDEAYHLFEEMA 401 (427)
Q Consensus 388 g~~~~A~~~~~~m~ 401 (427)
..|++|.++-....
T Consensus 1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred hHHHHHHHHHHhcc
Confidence 77777777665544
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.11 E-value=2 Score=41.24 Aligned_cols=164 Identities=18% Similarity=0.141 Sum_probs=108.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCC-CCCCH-----hhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChh
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARN-RAPDN-----FTYEEVINGLCK----SRKRLEAYRVFNDLKERGYVPDTV 305 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~ 305 (427)
.+..+++..+=.||-+.+++.+.+..+.+ +.-.. -+|..++..++. ....+.|.+++..+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 45566777777899999999888766543 21111 234444444443 45678899999999876 46766
Q ss_pred hHHHHH-HHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 306 MYTTVI-HGLCKMGWLGDARKMWFEMIHKG---LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 306 ~~~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
.|...- +.+...|++++|.+.+++..... .+.....+--+..++.-.++|++|.+.|..+.+.. ..+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 555433 45667899999999999766421 11223345556677888899999999999998762 23445555444
Q ss_pred H-HHHhcCCH-------HHHHHHHHHHHH
Q 045814 382 A-GLCLHGRT-------DEAYHLFEEMAQ 402 (427)
Q Consensus 382 ~-~~~~~g~~-------~~A~~~~~~m~~ 402 (427)
. ++...|+. ++|.++|.+...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 33456777 888888887654
No 237
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.98 E-value=2 Score=36.64 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI 311 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 311 (427)
...|+.-+ .-.+.|++++|.+.|+.+....+ +-...+--.++.++.+.+++++|....++....-..-...-|-.-|
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34455443 44667888999998888876532 1123455666777888889999888888877653332233444444
Q ss_pred HHHHcc-------CCH---HHHHHHHHHHHHc----CCCCCHHHH------------HHHHHHHhhcCCHHHHHHHHHHH
Q 045814 312 HGLCKM-------GWL---GDARKMWFEMIHK----GLLPNEYTY------------NSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 312 ~~~~~~-------g~~---~~a~~~~~~m~~~----~~~p~~~~~------------~~li~~~~~~g~~~~a~~~~~~m 365 (427)
.+.+.- .+. ..|..-|++++.. ...||...- ..+.+.|.+.|.+..|..-+++|
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v 193 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV 193 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 444421 222 3444444444443 222332211 23566789999999999999999
Q ss_pred HHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 366 LDKGYGET---TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 366 ~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.+. .+-+ ...+-.+..+|...|-.++|.+.-+-+...
T Consensus 194 ~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 194 LEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred Hhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 987 3323 345566778899999999998887777664
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.94 E-value=1.7 Score=44.93 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=77.5
Q ss_pred CcCHhhHH----HHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045814 170 FGSIKTWN----SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245 (427)
Q Consensus 170 ~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 245 (427)
.|+...+. +....+.+...+++|.-+|+..-+..-.+.+|..+|+|.+|+.+..++....-. -..+-..|+.-+.
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence 44555444 444555667788888888877766666788888999999999888877532111 1122256777788
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 246 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
..++.-+|-+++.+.... ....+..|++...+++|.++-....
T Consensus 1011 e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 888888888888776543 2334455566667777776655443
No 239
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.92 E-value=2.6 Score=37.55 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=86.1
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCC---
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL--- 230 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 230 (427)
+++...+++.|.+.|...+..+|-+..-.... .+-+.... ....|..+++.|.+..+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~-------------------~~~ra~~iy~~mKk~H~fLT 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDE-------------------IIQRAKEIYKEMKKKHPFLT 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHH-------------------HHHHHHHHHHHHHHhCcccc
Confidence 45677889999999999888777664444333 11111111 13466777888876543
Q ss_pred CCCHHHHHHHHHHHHccCC----hhHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 045814 231 VPENTAFNKLISRFCEKKN----FGRVSELLHTMVARNRAPDN--FTYEEVINGLCKSRK--RLEAYRVFNDLKERGYVP 302 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p 302 (427)
.++...+..++.. ..++ .+.++..|+.+.+.|+..+. ...+.++........ ...+.++++.+.+.|+++
T Consensus 138 s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki 215 (297)
T PF13170_consen 138 SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI 215 (297)
T ss_pred CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc
Confidence 2345566666544 3333 35677888888887875443 344444443332222 447888999999999998
Q ss_pred ChhhHHHHHHHH
Q 045814 303 DTVMYTTVIHGL 314 (427)
Q Consensus 303 ~~~~~~~li~~~ 314 (427)
....|..+.-..
T Consensus 216 k~~~yp~lGlLa 227 (297)
T PF13170_consen 216 KYMHYPTLGLLA 227 (297)
T ss_pred ccccccHHHHHH
Confidence 888877654433
No 240
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.73 E-value=1.1 Score=38.46 Aligned_cols=96 Identities=17% Similarity=0.154 Sum_probs=39.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHH
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY--GETTVTYNTLIA 382 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~ 382 (427)
|+..+..+ +.|++..|..-|...++.... -....+--|..++...|+++.|..+|..+.+.-. +--+..+-.|..
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 44433333 334455555555544443110 0111223344444555555555555554443310 001233344444
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 045814 383 GLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~ 403 (427)
...+.|+.++|..+|++..+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHH
Confidence 444555555555555555443
No 241
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.68 E-value=0.72 Score=41.84 Aligned_cols=94 Identities=9% Similarity=-0.017 Sum_probs=52.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY-NTLIAGL 384 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~ 384 (427)
.++.+.-+|.+.+++.+|+..-++.+..+ ++|....-.=..+|...|+++.|+..|+.+.+. .|+.... +.|+..-
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~ 335 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK 335 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence 45556666666777777777777666664 335555555566666677777777777777664 3333333 3333333
Q ss_pred HhcCCHH-HHHHHHHHHHH
Q 045814 385 CLHGRTD-EAYHLFEEMAQ 402 (427)
Q Consensus 385 ~~~g~~~-~A~~~~~~m~~ 402 (427)
-+..... ...++|..|..
T Consensus 336 ~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 336 QKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3333332 33556666654
No 242
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.58 E-value=0.49 Score=41.24 Aligned_cols=79 Identities=13% Similarity=0.053 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CCCCCChhhHH
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-----KGYGETTVTYN 378 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~ 378 (427)
..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|++.|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3456666666666666777777666666654 23566666677777777777777666666554 36666666555
Q ss_pred HHHHH
Q 045814 379 TLIAG 383 (427)
Q Consensus 379 ~li~~ 383 (427)
.+...
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 55444
No 243
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.48 E-value=0.78 Score=41.66 Aligned_cols=96 Identities=17% Similarity=0.103 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT-YNSMIHG 348 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~ 348 (427)
.++..+.-+|.+.+++.+|++.-+..++.+.. |+...-.-..+|...|+++.|+..|+++++. .|+... -+.++.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 46777888889999999999999998887643 7777777788999999999999999999986 455444 4445544
Q ss_pred HhhcCCH-HHHHHHHHHHHHC
Q 045814 349 YCRIDNL-EEAKRLHKEMLDK 368 (427)
Q Consensus 349 ~~~~g~~-~~a~~~~~~m~~~ 368 (427)
-.+.... ++..++|..|...
T Consensus 335 ~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 4444443 4446788888654
No 244
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.15 E-value=0.15 Score=30.38 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=28.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 179 (427)
.++..+...|.+.|++++|.++|++..+.... |...+..+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 35667778888888888888888888876443 45555443
No 245
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.15 E-value=1.8 Score=32.69 Aligned_cols=91 Identities=13% Similarity=0.043 Sum_probs=62.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCC
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN---FTYEEVINGLCKSRK 284 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~ 284 (427)
++...|+.+.|++.|.+.+..-+. ....||.-..++.-.|+.++|.+=+++..+..-..+. ..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 455677888888888777765333 6678888888888888888888888877764322222 233333445667788
Q ss_pred hHHHHHHHHHHHhCC
Q 045814 285 RLEAYRVFNDLKERG 299 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~ 299 (427)
-+.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 888888888777665
No 246
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.09 E-value=1.9 Score=32.55 Aligned_cols=91 Identities=12% Similarity=-0.014 Sum_probs=51.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcCC
Q 045814 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT---YNSMIHGYCRIDN 354 (427)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~ 354 (427)
++...|+.+.|++.|......-.+ ....||.-.+++.-.|+.++|++=+++..+..-.-.... |..-...|-..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 345566677777777666554332 556666666777667777777666666665421112221 2222233555666
Q ss_pred HHHHHHHHHHHHHCC
Q 045814 355 LEEAKRLHKEMLDKG 369 (427)
Q Consensus 355 ~~~a~~~~~~m~~~~ 369 (427)
.+.|..=|+...+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 666666666665554
No 247
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=5 Score=36.80 Aligned_cols=89 Identities=12% Similarity=0.050 Sum_probs=49.6
Q ss_pred HHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH
Q 045814 279 LCKSRKRLEAYRVFNDLKER---GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL 355 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~ 355 (427)
..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--++..+.+.. -...|..-..++...++|
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKW 337 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHH
Confidence 45667777777777766543 23344555655666666777777777666666554100 011222223344455667
Q ss_pred HHHHHHHHHHHHC
Q 045814 356 EEAKRLHKEMLDK 368 (427)
Q Consensus 356 ~~a~~~~~~m~~~ 368 (427)
++|.+-++...+.
T Consensus 338 e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 338 EEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHhh
Confidence 7777766666544
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.89 E-value=3.6 Score=34.91 Aligned_cols=27 Identities=15% Similarity=-0.009 Sum_probs=17.3
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLK 165 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~ 165 (427)
..|.-...+|...+++++|...+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 345555666777777777777665554
No 249
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.75 E-value=0.79 Score=39.99 Aligned_cols=60 Identities=20% Similarity=0.263 Sum_probs=33.1
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
++..++..+...|+.+.+...++++....+ -+...|..+|.+|.+.|+...|+..|+.+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 455555555555555555555555555532 244555555555555555555555555553
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.75 E-value=2.5 Score=32.68 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=35.5
Q ss_pred HhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 280 CKSRKRLEAYRVFNDLKERGYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
.+.|++++|.+.|+.+...-.- -....--.++.+|.+.+++++|...+++.++....-...-|...+.+++
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 4556666666666666544111 1223444455666666666666666666665532222233444444443
No 251
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.72 E-value=2.5 Score=32.66 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=52.4
Q ss_pred HHHHHccCChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814 241 ISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316 (427)
Q Consensus 241 i~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (427)
.....+.|++++|.+.|+.+..+-.. -....--.++.+|.+.+++++|...+++..+....---.-|-..+.+++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34456678888888888888776321 12345667788888899999998888888877554333455555555554
No 252
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.71 E-value=5.5 Score=36.52 Aligned_cols=31 Identities=6% Similarity=0.156 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+---+.+++.++.-.|+.++|.+..+.|.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 4445566777777777888888877777765
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.68 E-value=4.5 Score=35.39 Aligned_cols=148 Identities=13% Similarity=0.094 Sum_probs=87.9
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (427)
......|+..+|..+|......... +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456678888888888877766433 345566677788888888888888887754322112222223344455555555
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHH
Q 045814 322 DARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 322 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~ 394 (427)
+...+-.+.-.. | |...-..+...+...|+.+.|.+.+-.+.+. |.. |...=..+++.+.-.|.-+.+.
T Consensus 221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~ 292 (304)
T COG3118 221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLV 292 (304)
T ss_pred CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence 555554444442 3 4455555666777778888877766555543 333 4555666666666666444433
No 254
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.63 E-value=3.7 Score=34.26 Aligned_cols=224 Identities=16% Similarity=0.086 Sum_probs=103.4
Q ss_pred CChhHHHHHHHHHHhcCCC-cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814 152 GLIEEAFCAFSKLKEMGVF-GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230 (427)
Q Consensus 152 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 230 (427)
+....+...+......... .....+......+...+....+...+...... ...
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~ 91 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-------------------------ELL 91 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-------------------------hhc
Confidence 4444555555555443222 12455556666666666666666555554421 011
Q ss_pred CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCChhhH
Q 045814 231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN-GLCKSRKRLEAYRVFNDLKERGY--VPDTVMY 307 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~ 307 (427)
......+......+...+++..+.+.+.........+ ......... .+...|+++.|...+.+...... ......+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 170 (291)
T COG0457 92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL 170 (291)
T ss_pred cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence 1223334444444444445555555555554433222 111111122 45555666666666665533211 0122222
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (427)
......+...++.+.+...+..............+..+...+...++++.|...+......... ....+..+...+...
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 249 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLEL 249 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHc
Confidence 3333334455566666666666555421112344555555555666666666666665554211 123333333333344
Q ss_pred CCHHHHHHHHHHHHH
Q 045814 388 GRTDEAYHLFEEMAQ 402 (427)
Q Consensus 388 g~~~~A~~~~~~m~~ 402 (427)
|..+++...+.+...
T Consensus 250 ~~~~~~~~~~~~~~~ 264 (291)
T COG0457 250 GRYEEALEALEKALE 264 (291)
T ss_pred CCHHHHHHHHHHHHH
Confidence 556666666655554
No 255
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=93.53 E-value=4.8 Score=35.19 Aligned_cols=140 Identities=8% Similarity=0.085 Sum_probs=95.6
Q ss_pred ChHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814 284 KRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKMG--WLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAK 359 (427)
Q Consensus 284 ~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~ 359 (427)
...+|+++|+.... ..+--|..+...+++...... ....-.++.+-+... |-.++..+...++..+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34566666663322 234447777777777776522 233333333333322 45677888889999999999999999
Q ss_pred HHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHhHHHHHHHHHHhcC
Q 045814 360 RLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEE-----MAQKGIFRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 360 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~li~~~~~~g 423 (427)
++|+..... +..-|...|...|+.....|+..-..++.++ +.+.|+..+...-..+-+.|.+.|
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
Confidence 999988765 6667899999999999999998777666654 344567777777766666665543
No 256
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.52 E-value=5.2 Score=35.62 Aligned_cols=87 Identities=8% Similarity=0.045 Sum_probs=37.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAF----NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 281 (427)
-.+|...|+.+.....++++... ..+|...| ..+.-++...|-+++|++.-++..+-+ +.|...-.++...+--
T Consensus 144 h~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem 221 (491)
T KOG2610|consen 144 HDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEM 221 (491)
T ss_pred hhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHh
Confidence 34455555555555555554432 11122111 112222334555555555555544443 2244444444444555
Q ss_pred cCChHHHHHHHHH
Q 045814 282 SRKRLEAYRVFND 294 (427)
Q Consensus 282 ~~~~~~a~~~~~~ 294 (427)
.|+..++.+...+
T Consensus 222 ~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 222 NGRHKEGKEFMYK 234 (491)
T ss_pred cchhhhHHHHHHh
Confidence 5555555544443
No 257
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.19 E-value=7.2 Score=36.29 Aligned_cols=258 Identities=13% Similarity=0.082 Sum_probs=125.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCcCH------hhHHHHHHHHHHcCChhHHHHHHHHHHhcc------hh--HHHHHhc
Q 045814 147 CLCESGLIEEAFCAFSKLKEMGVFGSI------KTWNSALLGCIKIDRTDLVWKLYHDLIESG------YL--IQAFCND 212 (427)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~l--~~~~~~~ 212 (427)
.+-+.+++.+|.++|.++.+..-. +. ..-+.++++|-. ++.+.....+....+.. .+ .-.+.+.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~ 92 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ 92 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence 345788999999999998764211 21 223445555543 23333333333333321 12 2223456
Q ss_pred CChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC----CCCHhhHHH
Q 045814 213 GKVSEGYELLRQVLED--GLVP------------ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----APDNFTYEE 274 (427)
Q Consensus 213 g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~ 274 (427)
+.+++|.+.+...... +..| |-..=+..+.++...|.+.++..+++++...-+ .-+..+|+.
T Consensus 93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~ 172 (549)
T PF07079_consen 93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR 172 (549)
T ss_pred hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence 7777777777665544 2221 112223445666677777777777777665432 356667776
Q ss_pred HHHHHHhcC--------C-------hHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHcc--CCHHHHHHHHHHHH
Q 045814 275 VINGLCKSR--------K-------RLEAYRVFNDLKER------GYVPDTVMYTTVIHGLCKM--GWLGDARKMWFEMI 331 (427)
Q Consensus 275 ll~~~~~~~--------~-------~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~ 331 (427)
++-.++++- . ++.+.-...+|... .+.|-......++....-. .+..--++++..-.
T Consensus 173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We 252 (549)
T PF07079_consen 173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE 252 (549)
T ss_pred HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence 554444321 0 11122222222211 1122222222222222211 11122223333333
Q ss_pred HcCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045814 332 HKGLLPNEY-TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE----TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406 (427)
Q Consensus 332 ~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (427)
..-+.|+.. ....++..+.. +.+++..+.+.+....+.+ =..++..++...++.++..+|...+.-+..- .
T Consensus 253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--d 328 (549)
T PF07079_consen 253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--D 328 (549)
T ss_pred hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--C
Confidence 333445433 22334444443 5666666666665543221 1346777777777888888888888777653 4
Q ss_pred CCHh
Q 045814 407 RDVI 410 (427)
Q Consensus 407 p~~~ 410 (427)
|+..
T Consensus 329 p~~s 332 (549)
T PF07079_consen 329 PRIS 332 (549)
T ss_pred Ccch
Confidence 4443
No 258
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=1.8 Score=41.49 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=82.7
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 187 (427)
.-+.+++.+.+.|-.++|+++ .+|+..- .....+.|+++.|.++..+.. +..-|..|.++....+
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~ 680 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALEL------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG 680 (794)
T ss_pred hhhhHHhHhhhccchHhhhhc------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc
Confidence 445556666666666666654 2222211 223345577777776665542 4566777777777777
Q ss_pred ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 045814 188 RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260 (427)
Q Consensus 188 ~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 260 (427)
++..|.+.|......+.|+-.+...|+-+....+-....+.|. .|...-+|...|+++++.+++.+-
T Consensus 681 ~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 681 ELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred cchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 7777777777777777777777777776655555555555543 233445566778888887777543
No 259
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.15 E-value=0.002 Score=50.70 Aligned_cols=52 Identities=8% Similarity=-0.021 Sum_probs=21.8
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 3333444444444444444433333334444444444444444444444443
No 260
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.11 E-value=2.9 Score=34.09 Aligned_cols=95 Identities=17% Similarity=0.192 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-------
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT--VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY------- 340 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------- 340 (427)
..+..+.+.|++.|+.++|.+.|.++.+....+.. ..+-.+|......+++..+...+.+....-..+...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 35556666666667777777766666655333322 244555666666666666666666554331111111
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
.|..+ ++...+++..|-+.|-+..
T Consensus 117 ~~~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHHhchHHHHHHHHHccC
Confidence 11111 1234566776666665544
No 261
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.03 E-value=1.5 Score=41.93 Aligned_cols=97 Identities=13% Similarity=0.143 Sum_probs=48.3
Q ss_pred HHcCChhHHHHHHHHH---HhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 045814 184 IKIDRTDLVWKLYHDL---IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM 260 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 260 (427)
.+.|+++.|.++..+. .++..|.++....|++..|.+.|....+ |..|+-.+...|+-+....+-...
T Consensus 648 l~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~ 718 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA 718 (794)
T ss_pred hhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence 4555666665554333 2234456666666666666666554432 334455555555555444444444
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL 295 (427)
Q Consensus 261 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 295 (427)
.+.|.. |...-+|...|+++++.+++.+-
T Consensus 719 ~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 719 KKQGKN------NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred Hhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence 444321 12223444556666666555443
No 262
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=92.99 E-value=7.1 Score=35.62 Aligned_cols=298 Identities=12% Similarity=0.079 Sum_probs=183.8
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHH--HcCChHHHHHHHHhcC--CCCCHHhHHHHHH--HHHhcCChhHHH
Q 045814 85 NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV--EARAFKVAMDFLDSTG--FSPNPNSLELYIQ--CLCESGLIEEAF 158 (427)
Q Consensus 85 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~--~~~~~~~~~~li~--~~~~~~~~~~A~ 158 (427)
.+..+.+.|..-.++.| |..|-..+. -.|+-..|.++-.+.+ +..|......|+. +-.-.|+.+.|.
T Consensus 68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence 44455566665544433 344444443 4578888888877632 3445555555554 344579999999
Q ss_pred HHHHHHHhcCCCcCHhhHHH----HHHHHHHcCChhHHHHHHHHHHhc--------chhHHHHHhcCChhHHHHHHHHHH
Q 045814 159 CAFSKLKEMGVFGSIKTWNS----ALLGCIKIDRTDLVWKLYHDLIES--------GYLIQAFCNDGKVSEGYELLRQVL 226 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~~ 226 (427)
+-|+.|.. |..+-.. |.-.-.+.|+.+.|.+.-+..-.. ...+...|..|+++.|+++++.-.
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 99999986 4444333 223334678888888777776654 247888999999999999998776
Q ss_pred HCC-CCCCHHH--HHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814 227 EDG-LVPENTA--FNKLISRFCE---KKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERG 299 (427)
Q Consensus 227 ~~~-~~~~~~~--~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 299 (427)
... +.++..- -..|+.+-.. .-+...|.+.-.+..+ +.||.. .--.-..++.+.|+..++-.+++.+-+..
T Consensus 216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 543 3333221 1222222111 2234445544444433 344432 22334567889999999999999998886
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 045814 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377 (427)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 377 (427)
..|+.. .+..+.+.|+ .+..-++...+. .++|| ....-.+..+-...|++..|..--+.... ..|....|
T Consensus 294 PHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 294 PHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred CChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 666533 2334455565 333333333222 13343 45566667777788999888876666654 35778888
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 045814 378 NTLIAGLC-LHGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 378 ~~li~~~~-~~g~~~~A~~~~~~m~~~g 404 (427)
-.|.+.-. ..|+-.++...+-+..+.-
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 88877654 4599999999988887753
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.96 E-value=9 Score=36.80 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=88.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcch---------------hHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHH
Q 045814 176 WNSALLGCIKIDRTDLVWKLYHDLIESGY---------------LIQAFC----NDGKVSEGYELLRQVLEDGLVPENTA 236 (427)
Q Consensus 176 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~ 236 (427)
+..++....=.|+-+.+++.+....+.+. .+..++ ...+.+.|.+++..+...- |+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence 34445555555666666666665544321 111111 2456777888888887643 45444
Q ss_pred HHHH-HHHHHccCChhHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 237 FNKL-ISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 237 ~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
|... .+.+...|+.++|.+.|+....... ......+--+.-.+.-..++++|.+.|..+.+.+-. +..+|.-+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence 4433 3455668888888888886653211 112233444455567778888888888888776433 3334443333
Q ss_pred H-HHccCCH-------HHHHHHHHHHH
Q 045814 313 G-LCKMGWL-------GDARKMWFEMI 331 (427)
Q Consensus 313 ~-~~~~g~~-------~~a~~~~~~m~ 331 (427)
+ +...|+. ++|..++.+..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 2 3345666 77777777664
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.95 E-value=3.3 Score=36.80 Aligned_cols=190 Identities=12% Similarity=-0.006 Sum_probs=122.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh--hH--HHHHHHHHhcCCh
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF--TY--EEVINGLCKSRKR 285 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~--~~ll~~~~~~~~~ 285 (427)
...|+..+|-..++++.+.-+. |...++-.=.+|.-.|+.+.-...+++.... -.+|.. +| ....-++..+|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4578888888888888876443 8888888888899999998888888887765 123332 22 3344455688999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLH 362 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~ 362 (427)
++|++.-++..+.+.. |.-.--+....+.-.|+..++.+++.+-...--..+ ..-|-...-.+...+.++.|+++|
T Consensus 192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 9999999988877543 666667777888888999999998776543311111 122333344556668999999999
Q ss_pred HH-HHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 363 KE-MLDKGYGETTVT---YNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 363 ~~-m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+. |.+.--+.|.+. |.-+.-.-.+...+.+..++-+.+-+
T Consensus 271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d 314 (491)
T KOG2610|consen 271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTD 314 (491)
T ss_pred HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcc
Confidence 85 444423334322 22223333344444444444444433
No 265
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.91 E-value=0.48 Score=28.16 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=14.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 377 YNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
|..+...|...|++++|.++|++..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444455555555555555555555543
No 266
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.83 E-value=4.2 Score=32.57 Aligned_cols=101 Identities=19% Similarity=0.242 Sum_probs=43.9
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 299 (427)
+.++.+...++.|+...+..+++.+.+.|.+. .+..+...++-+|.......+-.+.. ....+.++=-+|.++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR- 87 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR- 87 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence 34444455555566666666666666655543 23333344444444333333322221 222233332233221
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 330 (427)
=...+..++..+...|++-+|.++.+..
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012334445555555555555555443
No 267
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.80 E-value=4.2 Score=32.55 Aligned_cols=135 Identities=16% Similarity=0.219 Sum_probs=87.7
Q ss_pred HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 254 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.+.+..+.+.++.|+...+..+++.+.+.|++... ..+...++-+|.......+-.+.. ....+.++=-+|.+.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 44556666778888888999999999999886554 444556666676665555544433 233444443344332
Q ss_pred -CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 334 -GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 334 -~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+ ..+..++..+...|++-+|.++.+..... +......++++-.+.++...-..+++-..+.
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1 13566777788889999999988775332 3334466777777888877666666666554
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.64 E-value=9.3 Score=36.12 Aligned_cols=75 Identities=16% Similarity=0.204 Sum_probs=45.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 045814 309 TVIHGLCKMGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNTLIAG 383 (427)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~ 383 (427)
.+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+..+...+. -..+|+..+-.
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 3455555678888888888877654211 123355667777778888888887777765432221 23456655543
No 269
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.57 E-value=0.33 Score=27.44 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=20.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+|..|...|.+.|++++|.++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
No 270
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.53 E-value=13 Score=37.48 Aligned_cols=72 Identities=11% Similarity=0.188 Sum_probs=48.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCCHhHHHHHHHHH
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH----LFEEMAQKGIFRDVITYNTLIQGY 419 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~~~~~li~~~ 419 (427)
-++..+.+..+.+.+..+.+..-+. ++..|..++..+++.+.++...+ +++.+.....-|. ..+++.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp----l~VL~~L 781 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP----LHVLQIL 781 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH----HHHHHHH
Confidence 3566777778888888887776554 88899999999999986665444 4444444433333 3455555
Q ss_pred HhcC
Q 045814 420 CKEG 423 (427)
Q Consensus 420 ~~~g 423 (427)
++.+
T Consensus 782 akn~ 785 (933)
T KOG2114|consen 782 AKNG 785 (933)
T ss_pred hcCC
Confidence 5544
No 271
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.49 E-value=6 Score=33.60 Aligned_cols=204 Identities=12% Similarity=0.086 Sum_probs=95.0
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 183 (427)
...|..-..+|-...++++|..-+.+. +..-+...|. ..+..+.|.-+.++|.+. .--+..|+-....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 334555556666777888887766552 2121211111 122334555555555442 11234556666677
Q ss_pred HHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814 184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED---GL--VPENTAFNKLISRFCEKKNFGRVSELLH 258 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~ 258 (427)
...|..+.|-..++..-+ .....++++|++++.+.... +- ..-...+..+-..+.+...+++|-..+.
T Consensus 102 ~E~GspdtAAmaleKAak-------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK-------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHhCCcchHHHHHHHHHH-------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 777777766665554432 23455667777776654421 10 0111233344444555555554444433
Q ss_pred HHhhCC----CCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCCHHHHHHH
Q 045814 259 TMVARN----RAPDN-FTYEEVINGLCKSRKRLEAYRVFNDLKER---GYVPDTVMYTTVIHGLCKMGWLGDARKM 326 (427)
Q Consensus 259 ~m~~~~----~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~ 326 (427)
+-.... --++. ..|-..|-.|.-..++..|++.++.-.+. .-.-+..+...|+.+| ..|+.+++..+
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 221110 01111 12333333444455666666666553221 1112444555566555 34555554443
No 272
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.43 E-value=5.6 Score=33.10 Aligned_cols=189 Identities=15% Similarity=0.026 Sum_probs=135.5
Q ss_pred ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814 214 KVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVAR-NRAPDNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444555554443322 13567778888889999999999998887753 2344556777788888888999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 292 FNDLKERGYVPDTVMYTTVIH-GLCKMGWLGDARKMWFEMIHKGL--LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....+.
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 99998764443 222333333 78899999999999999966321 123344444455577889999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
........+..+...+...++++.|...+......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL 231 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence 32214677888888999999999999999998875
No 273
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=92.43 E-value=7 Score=34.20 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=96.1
Q ss_pred hcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 045814 166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRF 244 (427)
Q Consensus 166 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~ 244 (427)
..|.+++..-+..+++.+...-...+... |..+++.| ..+.+|+.+|+.... ..+.-|..+...+++..
T Consensus 105 s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk~N---------~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sM 174 (292)
T PF13929_consen 105 SMGCELTKEDLISFLKLVIINLSSNKSFN-YWDLVKRN---------KIVVEALKLYDGLNPDESIIFDEEVISLLLKSM 174 (292)
T ss_pred HcCCCCcHHHHHHHHHHHHhccccccchH-HHHHHHhh---------HHHHHHHHHhhccCcccceeeChHHHHHHHHHH
Confidence 34555555555555555444433333322 33333222 223445555553221 23444666777777666
Q ss_pred Hc-cC-ChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCCH
Q 045814 245 CE-KK-NFGRVSELLHTMVAR-NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWL 320 (427)
Q Consensus 245 ~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~ 320 (427)
.. .+ ....-.++.+-+... +..++..+...+++.++..+++.+-.++++.-... +..-|...|..+|......|+.
T Consensus 175 v~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~ 254 (292)
T PF13929_consen 175 VIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ 254 (292)
T ss_pred HhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence 55 21 233333334433322 34667777888888888888888888888776554 5555788888888888888887
Q ss_pred HHHHHHHHH-----HHHcCCCCCHHHHHHHHH
Q 045814 321 GDARKMWFE-----MIHKGLLPNEYTYNSMIH 347 (427)
Q Consensus 321 ~~a~~~~~~-----m~~~~~~p~~~~~~~li~ 347 (427)
.-...+.++ +.+.|+..+...-..+-.
T Consensus 255 ~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~ 286 (292)
T PF13929_consen 255 EVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE 286 (292)
T ss_pred HHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence 666665554 233345545444444433
No 274
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=2.6 Score=37.01 Aligned_cols=48 Identities=17% Similarity=0.215 Sum_probs=23.4
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331 (427)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 331 (427)
++++++.++..=.+.|+-||-.+++.+|+.+.+.+++.+|..+...|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555554444444443
No 275
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=92.07 E-value=8 Score=34.90 Aligned_cols=126 Identities=12% Similarity=0.052 Sum_probs=57.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHH-
Q 045814 274 EVINGLCKSRKRLEAYRVFNDLKERG-----YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNEYTYN- 343 (427)
Q Consensus 274 ~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~- 343 (427)
++-.++...+.++++++.|+...+-. ......+|..+-+.|.+..++++|.-+..+..+. ++.--..-|.
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~ 206 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA 206 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence 34455555556666666665553321 0112335556666666666666665555444322 2111111122
Q ss_pred ----HHHHHHhhcCCHHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814 344 ----SMIHGYCRIDNLEEAKRLHKEMLD----KGYGE-TTVTYNTLIAGLCLHGRTDEAYHLFEE 399 (427)
Q Consensus 344 ----~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (427)
.+.-++-..|.+-.|.+..++..+ .|-.+ .......+.+.|...|+.+.|+.-|++
T Consensus 207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 122344455555555555554432 22111 122333444555566666666555544
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.97 E-value=6 Score=34.19 Aligned_cols=97 Identities=10% Similarity=0.124 Sum_probs=60.5
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-hhhHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD-TVMYTTVI 311 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~~li 311 (427)
.|+.-+.. .+.|++..|...|...++..+. -....+-.|...+...|++++|-.+|..+.+.-.+ |. +.++--+.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56666654 4456677777777777776432 12234556777777777777777777777654211 11 23445555
Q ss_pred HHHHccCCHHHHHHHHHHHHHc
Q 045814 312 HGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6666777777777777777665
No 277
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.78 E-value=8.8 Score=33.94 Aligned_cols=163 Identities=13% Similarity=0.095 Sum_probs=95.2
Q ss_pred hcCChhHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHccCChhHHHHHHHHHhhC--------CCCCCH-----
Q 045814 211 NDGKVSEGYELLRQVLEDG--LVPEN------TAFNKLISRFCEKKNFGRVSELLHTMVAR--------NRAPDN----- 269 (427)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~----- 269 (427)
+.|+.+.|..++.+..... ..|+. ..|+.=...+.+..+++.|...+++..+. ...|+.
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 4566666666666655432 12221 12333333333333887777777655432 122332
Q ss_pred hhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRL---EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 346 (427)
.++..++.+|...+..+ +|.++++.+...... ....+-.-+..+.+.++.+++.+.+.+|...- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 35667788888877665 466667777554322 24455566777777899999999999999873 22344566666
Q ss_pred HHHhhc--CCHHHHHHHHHHHHHCCCCCChh
Q 045814 347 HGYCRI--DNLEEAKRLHKEMLDKGYGETTV 375 (427)
Q Consensus 347 ~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~ 375 (427)
..+-.. .....|...++.+....+.|...
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~ 193 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED 193 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence 555222 23456777777776655555553
No 278
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.40 E-value=6.3 Score=31.56 Aligned_cols=88 Identities=11% Similarity=0.173 Sum_probs=38.5
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENT-AFNKL--ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 286 (427)
...|+...|+..|++.-.....|-.. -..-| .-.+...|.++++....+-+-..+-+--...-..|.-+-.+.|++.
T Consensus 105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a 184 (221)
T COG4649 105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA 184 (221)
T ss_pred hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence 34455555555555554433333222 11111 1123345555555555554433322212222334444445566666
Q ss_pred HHHHHHHHHHh
Q 045814 287 EAYRVFNDLKE 297 (427)
Q Consensus 287 ~a~~~~~~m~~ 297 (427)
+|...|..+..
T Consensus 185 ~A~~~F~qia~ 195 (221)
T COG4649 185 KAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHHHc
Confidence 66666665544
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.35 E-value=3.6 Score=33.54 Aligned_cols=98 Identities=13% Similarity=0.068 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHC---CCCCChhhHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE--YTYNSMIHGYCRIDNLEEAKRLHKEMLDK---GYGETTVTYNT 379 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ 379 (427)
..+..+...|++.|+.+.|.+.|.++.+....+.. ..+-.+|+.....+++..+...+.+.... |-.++...--.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46788899999999999999999999987554443 35667788888999999999988877644 22222221111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHHH
Q 045814 380 LIA--GLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 380 li~--~~~~~g~~~~A~~~~~~m~~ 402 (427)
... .+...|++.+|-+.|-+...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCc
Confidence 122 23457899999988876643
No 280
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=1 Score=39.47 Aligned_cols=102 Identities=15% Similarity=0.163 Sum_probs=74.0
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhh
Q 045814 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN-----SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT 175 (427)
Q Consensus 101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 175 (427)
|...+..+...++.......+++.+...+-+....|+.. +-.+.++.+ -.-++++++.++..=...|+.||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 556667777777776667778888888876654444321 222333333 33467788888888888999999999
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcc
Q 045814 176 WNSALLGCIKIDRTDLVWKLYHDLIESG 203 (427)
Q Consensus 176 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 203 (427)
++.+|+.+.+.+++.+|.++...|+..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999988888777653
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.15 E-value=0.53 Score=26.53 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHH
Q 045814 141 LELYIQCLCESGLIEEAFCAFSKLK 165 (427)
Q Consensus 141 ~~~li~~~~~~~~~~~A~~~~~~m~ 165 (427)
|+.|...|.+.|++++|.++|++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5566666666666666666666643
No 282
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.12 E-value=1.8 Score=30.73 Aligned_cols=45 Identities=13% Similarity=0.266 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
++.+-++.+....+.|++....+.+++|-+.+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555555444
No 283
>PRK11906 transcriptional regulator; Provisional
Probab=91.04 E-value=13 Score=34.85 Aligned_cols=160 Identities=9% Similarity=0.024 Sum_probs=102.7
Q ss_pred HHH--HHHHHHHHcc-----CChhHHHHHHHHHhhC-CCCCCH-hhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 045814 235 TAF--NKLISRFCEK-----KNFGRVSELLHTMVAR-NRAPDN-FTYEEVINGLCK---------SRKRLEAYRVFNDLK 296 (427)
Q Consensus 235 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~m~ 296 (427)
..| ...+.+.... .+.+.|..+|.+.... ...|+- ..|..+-.++.. .....+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 2256788888888732 234543 445444443332 223456777777788
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh-
Q 045814 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT- 374 (427)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~- 374 (427)
+.+.. |......+..+....++.+.|...|++.... .|| ..+|......+.-.|+.++|.+.+++..+. .|..
T Consensus 332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~ 406 (458)
T PRK11906 332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRR 406 (458)
T ss_pred hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchhh
Confidence 77655 8888888888788888899999999999886 444 344544455556679999999999997664 3332
Q ss_pred --hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045814 375 --VTYNTLIAGLCLHGRTDEAYHLFEEM 400 (427)
Q Consensus 375 --~~~~~li~~~~~~g~~~~A~~~~~~m 400 (427)
......++.|+.+ ..+.|.++|-+-
T Consensus 407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 433 (458)
T PRK11906 407 KAVVIKECVDMYVPN-PLKNNIKLYYKE 433 (458)
T ss_pred HHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence 3333444566655 567777777543
No 284
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=90.44 E-value=2.1 Score=30.70 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=18.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
..+-++.+....+.|++....+.+++|-+.+++..|.++++-++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444444444444
No 285
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=90.44 E-value=11 Score=32.45 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=33.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+..-|.+.|.+-.|..-+++|.+. ..-+ ...+-.+..+|-..|-.++|.+.-+-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345566667777777777777665 2111 123445566666777766666665555443
No 286
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.02 E-value=22 Score=35.55 Aligned_cols=125 Identities=14% Similarity=0.234 Sum_probs=69.4
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHccCChhHHHHHHHHHhhCC---CCCCHhhHHHHH
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLED----GLVPENTAFNKL-ISRFCEKKNFGRVSELLHTMVARN---RAPDNFTYEEVI 276 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll 276 (427)
++..+.+.+... |...+++.+.. +..+-...|..+ +..+...++...|.+.++.....- ..|-..++..++
T Consensus 106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~ 184 (608)
T PF10345_consen 106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS 184 (608)
T ss_pred HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence 444555555444 66666665542 222233344444 333333478888999888776542 244445555555
Q ss_pred HHHH--hcCChHHHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--ccCCHHHHHHHHHHH
Q 045814 277 NGLC--KSRKRLEAYRVFNDLKERG---------YVPDTVMYTTVIHGLC--KMGWLGDARKMWFEM 330 (427)
Q Consensus 277 ~~~~--~~~~~~~a~~~~~~m~~~~---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m 330 (427)
.+.. +.+..+++.+..+++.... ..|-..+|..+++.++ ..|+++.+...++++
T Consensus 185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5543 4566677777777663321 1234556777776554 567766666655554
No 287
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=13 Score=32.63 Aligned_cols=161 Identities=11% Similarity=0.110 Sum_probs=94.3
Q ss_pred hHHHHHHHHHHhcch-----hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814 190 DLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264 (427)
Q Consensus 190 ~~a~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 264 (427)
+...++++....... -.......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+....
T Consensus 120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 344555555544311 233556778888888888887765444 45566677788888888888888888776543
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHH
Q 045814 265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL-LPNEYTY 342 (427)
Q Consensus 265 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~ 342 (427)
-.........-|..+.+.....+...+-.+.-.. | |...=-.+...+...|+.++|.+.+-.+.+.+. .-|...=
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R 275 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR 275 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence 2222223233344455555555444444444432 3 444555566777778888888776666655421 1234445
Q ss_pred HHHHHHHhhcCC
Q 045814 343 NSMIHGYCRIDN 354 (427)
Q Consensus 343 ~~li~~~~~~g~ 354 (427)
..++..+.-.|.
T Consensus 276 k~lle~f~~~g~ 287 (304)
T COG3118 276 KTLLELFEAFGP 287 (304)
T ss_pred HHHHHHHHhcCC
Confidence 556665555553
No 288
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.81 E-value=5.8 Score=28.53 Aligned_cols=65 Identities=11% Similarity=0.010 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY 419 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 419 (427)
+.-+..+-+..+...++-|++.+..+.+++|.+.+++.-|.++|+-.+.+. .+....|..+++-.
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqEl 89 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQEL 89 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence 344677788888888999999999999999999999999999999998862 22333787777643
No 289
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.65 E-value=9.3 Score=30.65 Aligned_cols=128 Identities=15% Similarity=0.107 Sum_probs=64.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHhhcCCH
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY-TYNSMI--HGYCRIDNL 355 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li--~~~~~~g~~ 355 (427)
.+.++.++|+.-|..+.+.|..--+. .-..+.....+.|+...|...|+++-.....|-.. -...|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566666666666666654431110 11112223445666777777777665543333322 111111 123455666
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407 (427)
Q Consensus 356 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 407 (427)
+......+-+...+-+.-...-..|.-+-.+.|++.+|.+.|+.+......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 6666655555443322222333445555566777777777777666543333
No 290
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.77 E-value=26 Score=34.59 Aligned_cols=119 Identities=13% Similarity=0.007 Sum_probs=56.5
Q ss_pred ccCChhHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814 246 EKKNFGRVSELLHTMVA-------RNRAPDNFTYEEVINGLCKSR-----KRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313 (427)
Q Consensus 246 ~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (427)
...|.+.|+..|+.+.+ .| .......+...|.+.. +.+.|..++...-+.|.. +....-..+.-
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 44556666666665554 33 2223444445554422 455566666666666542 43333222222
Q ss_pred HHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHCC
Q 045814 314 LCK-MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC--RIDNLEEAKRLHKEMLDKG 369 (427)
Q Consensus 314 ~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~ 369 (427)
... ..+...|.++|...-..|..+ ...+-.++-... -..+...|..++++..+.|
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 222 134566777777766666421 111111111111 1225666666666666665
No 291
>PRK11906 transcriptional regulator; Provisional
Probab=88.72 E-value=21 Score=33.57 Aligned_cols=146 Identities=10% Similarity=0.001 Sum_probs=92.6
Q ss_pred hhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHc---------cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 045814 215 VSEGYELLRQVLE-DGLVPE-NTAFNKLISRFCE---------KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283 (427)
Q Consensus 215 ~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 283 (427)
.+.|+.+|.+... ....|+ ...|..+..++.. ..+..+|.+.-+...+.+. -|......+..+..-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence 4567777777762 223333 3344443333221 2334567777777777763 36777777777777888
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHH
Q 045814 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKR 360 (427)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~ 360 (427)
+++.|...|++....+.. ...+|....-.+.-.|+.++|.+.+++..+. .|.. ......+..|+.. .++.|.+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~ 428 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK 428 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence 899999999999887543 3445655566666789999999999997765 3332 2333445566655 4677777
Q ss_pred HHHHH
Q 045814 361 LHKEM 365 (427)
Q Consensus 361 ~~~~m 365 (427)
++-+-
T Consensus 429 ~~~~~ 433 (458)
T PRK11906 429 LYYKE 433 (458)
T ss_pred HHhhc
Confidence 76543
No 292
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=88.60 E-value=23 Score=33.69 Aligned_cols=129 Identities=8% Similarity=0.003 Sum_probs=72.2
Q ss_pred HcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814 185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN 264 (427)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 264 (427)
......+++++|++.++.+-..-. +....+..-..++........+-..+-..+..++-+.|+.++|.+.+.+|.+..
T Consensus 212 eA~Ti~Eae~l~rqAvkAgE~~lg--~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 212 EASTIVEAEELLRQAVKAGEASLG--KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred cccCHHHHHHHHHHHHHHHHHhhc--hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 345567888888877765321111 000000000111111122222223333446666677899999999999887654
Q ss_pred CCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 045814 265 RAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLC 315 (427)
Q Consensus 265 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~ 315 (427)
... .......|+.++...+.+.++..++.+-.+..... -...|+..+--+-
T Consensus 290 p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 290 PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 322 33577788899999999999999988875433221 2346666554433
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.49 E-value=20 Score=32.82 Aligned_cols=199 Identities=12% Similarity=0.042 Sum_probs=90.4
Q ss_pred HHHHHHcCChHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----cCHhhHHHHHHHHHHcC
Q 045814 113 FDSLVEARAFKVAMDFLDSTGF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF----GSIKTWNSALLGCIKID 187 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~ 187 (427)
.++..+.|+++...+....... .++...+..+... +.++++++....++....-.. .....|........+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq 82 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ 82 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 5667788888887666665432 2344444444443 778888888887776543110 01122222222222222
Q ss_pred ChhHHHHHHHHHHhcchhHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC
Q 045814 188 RTDLVWKLYHDLIESGYLIQAFCN-DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266 (427)
Q Consensus 188 ~~~~a~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 266 (427)
.+.+..++.+-... ... ..+.....+.++.=.. ...++..++..++..-.- ++..+ ....
T Consensus 83 ~L~Elee~~~~~~~-------~~~~~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~---------~l~~~--~~~~ 143 (352)
T PF02259_consen 83 QLVELEEIIELKSN-------LSQNPQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRL---------VLSLI--LLPE 143 (352)
T ss_pred HHHHHHHHHHHHHh-------hcccHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH---------HHhcc--cchh
Confidence 22222222211100 000 1111122222221111 123344444444432110 00000 1112
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
....+|..+.+.+.+.|.++.|...+..+.+.+... +....-.-+...-..|+..+|+..+++...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 234566667777777777777777777766543211 222333344555566777777777666655
No 294
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=88.45 E-value=20 Score=32.88 Aligned_cols=272 Identities=14% Similarity=0.037 Sum_probs=173.2
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHH--HcCChHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCChhHHHH
Q 045814 84 NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV--EARAFKVAMDFLDSTGFSPNPNS--LELYIQCLCESGLIEEAFC 159 (427)
Q Consensus 84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~ 159 (427)
++-..|.+.-....+. +..|..-.-.++.+-. -.|+++.|.+-|+.|--.|.... ...|.-.--+.|..+.|.+
T Consensus 98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~ 175 (531)
T COG3898 98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH 175 (531)
T ss_pred CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence 5556666555544322 4556666655655433 46999999999999754554332 2333344456788888888
Q ss_pred HHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch------------hHHHHH---hcCChhHHHHHHHH
Q 045814 160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------LIQAFC---NDGKVSEGYELLRQ 224 (427)
Q Consensus 160 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------l~~~~~---~~g~~~~a~~~~~~ 224 (427)
.-+..-..-.. -...+...+...+..|+++.|+++.+.-..... |+.+-. -..+...|...-.+
T Consensus 176 yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~ 254 (531)
T COG3898 176 YAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE 254 (531)
T ss_pred HHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 88877665333 467888999999999999999999987665421 221111 12234455444444
Q ss_pred HHHCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC
Q 045814 225 VLEDGLVPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVP 302 (427)
Q Consensus 225 ~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p 302 (427)
..+ +.||.. .-..-...+.+.|+..++-.+++.+=+....|++. .+..+.+.|+.. ..-+++..+. ..+|
T Consensus 255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta--~dRlkRa~~L~slk~ 326 (531)
T COG3898 255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTA--LDRLKRAKKLESLKP 326 (531)
T ss_pred Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcH--HHHHHHHHHHHhcCc
Confidence 333 344432 23334578899999999999999998886666542 223344556543 3333333221 2233
Q ss_pred -ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHC
Q 045814 303 -DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY-CRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 303 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~ 368 (427)
+..+--.+..+-...|++..|..--+.... ..|....|..|.+.- +..|+-.++...+.+..+.
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 445666677788889999888776666655 367888888777654 3459999999999888765
No 295
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.12 E-value=7.6 Score=27.66 Aligned_cols=64 Identities=11% Similarity=0.012 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 418 (427)
+.-++.+-++.+...++-|++.+..+.+++|.+.+++.-|.++|+-.+.+. ..+...|..+++-
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe 85 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE 85 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence 566778888888888999999999999999999999999999999888652 1245577777654
No 296
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=87.43 E-value=0.46 Score=37.10 Aligned_cols=84 Identities=18% Similarity=0.260 Sum_probs=45.8
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.. +..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 45555566666666666666666554455666677777777766666666655511 11222344555555555
Q ss_pred hHHHHHHHHHH
Q 045814 285 RLEAYRVFNDL 295 (427)
Q Consensus 285 ~~~a~~~~~~m 295 (427)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
No 297
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.36 E-value=13 Score=29.48 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=30.8
Q ss_pred HccCChhHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 245 CEKKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
.+.++.+++..++..+.-..+. +...++... .+...|++.+|.++|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence 4566777777777776654321 122233332 345777777777777777655
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.22 E-value=1.7 Score=25.06 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=21.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677788888888888888888877654
No 299
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.21 E-value=1.7 Score=23.85 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=16.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 300
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=86.96 E-value=28 Score=32.88 Aligned_cols=120 Identities=10% Similarity=0.083 Sum_probs=76.4
Q ss_pred HhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 045814 210 CNDGKVSEGYE-LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA 288 (427)
Q Consensus 210 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 288 (427)
...|++..|-+ ++..+......|+.....+ ..+...|+++.+...+...... +.....+..+++....+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 45566665554 4444444444455444433 3356678888888877655432 333556777888888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
..+-.-|....++ +...........-..|-++++...|+++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8888888776665 4444444444445567778888888877654
No 301
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=86.93 E-value=7.2 Score=32.15 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=9.2
Q ss_pred ChhhHHHHHHHHHccCCHHHH
Q 045814 303 DTVMYTTVIHGLCKMGWLGDA 323 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a 323 (427)
|+..+.+|++.+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 344444444444444444443
No 302
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.70 E-value=30 Score=33.01 Aligned_cols=163 Identities=13% Similarity=0.169 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
|....-+++..++.+.++.-++.+..+|...|. +-..|..++..|... ..++-..+|+++.+..+. |+..-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 344455555666666556666666666655542 344555566666555 445555566655555443 3333333333
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh
Q 045814 313 GLCKMGWLGDARKMWFEMIHKGLL-----PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCL 386 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~ 386 (427)
-|.+ ++...+..+|.++...=++ .-...|.-+.... ..+.+...++..++.+. |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 3333 5555555555554433111 0011222222211 12344444444444322 222233344444445555
Q ss_pred cCCHHHHHHHHHHHHH
Q 045814 387 HGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 387 ~g~~~~A~~~~~~m~~ 402 (427)
..++++|++++..+.+
T Consensus 218 ~eN~~eai~Ilk~il~ 233 (711)
T COG1747 218 NENWTEAIRILKHILE 233 (711)
T ss_pred ccCHHHHHHHHHHHhh
Confidence 5555555555554443
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=86.66 E-value=2.1 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=19.8
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLKEM 167 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 167 (427)
.+|..+..+|...|++++|++.|++..+.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666777777777777777777777653
No 304
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=86.37 E-value=14 Score=28.81 Aligned_cols=81 Identities=11% Similarity=0.123 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKG-----YGETTVTYNTLIAGLCLHGR-TDEAYHLFEEMAQKGIFRDVITYNTL 415 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l 415 (427)
.|+++......+++.-...+++.+.... -..+..+|+.++.+.....- --.+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555555555555555443110 01244566666666655444 33455666666666666777777777
Q ss_pred HHHHHhc
Q 045814 416 IQGYCKE 422 (427)
Q Consensus 416 i~~~~~~ 422 (427)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7666554
No 305
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=86.04 E-value=23 Score=31.09 Aligned_cols=72 Identities=22% Similarity=0.211 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-----KGIFRDVITYN 413 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~ 413 (427)
+++.....|..+|.+.+|.++.+.....+ +.+...|-.++..+...|+--.|.+-++++.+ .|+..|...++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 45666778999999999999999998763 45788899999999999998888888877754 37777665543
No 306
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.90 E-value=1.1 Score=24.82 Aligned_cols=18 Identities=17% Similarity=0.185 Sum_probs=7.1
Q ss_pred hHHHHHHHHHccCCHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDA 323 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a 323 (427)
+|+.+...|...|++++|
T Consensus 15 a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHCcCHHhh
Confidence 333333344444443333
No 307
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.62 E-value=9.3 Score=31.53 Aligned_cols=72 Identities=11% Similarity=0.030 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHH
Q 045814 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK---GYGETTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A 393 (427)
+.|.+.|-.+...+.--++.....+...|. ..+.+++.+++....+. +-.+|+..+.+|...|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 455555555555544434444444444443 34555666655555433 2245556666666666666666555
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=85.60 E-value=1.1 Score=24.87 Aligned_cols=20 Identities=20% Similarity=0.164 Sum_probs=9.7
Q ss_pred HHhHHHHHHHHHhcCChhHH
Q 045814 138 PNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A 157 (427)
..+|+.+...|...|++++|
T Consensus 13 ~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhh
Confidence 34444444455555554444
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.97 E-value=2.4 Score=24.35 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=15.9
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLK 165 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~ 165 (427)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 355666666666666666666666554
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.82 E-value=20 Score=28.46 Aligned_cols=53 Identities=13% Similarity=-0.011 Sum_probs=31.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYT-TVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
-.+.++.+++..++..+.-. .|...... .-...+...|++.+|..+++++.+.
T Consensus 20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34566777777777777655 23322221 1223345677777777777776654
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.98 E-value=3.8 Score=22.18 Aligned_cols=29 Identities=28% Similarity=0.211 Sum_probs=18.6
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLKEM 167 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 167 (427)
..|..+..++...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34556666777777777777777766653
No 312
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.44 E-value=4.2 Score=22.00 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..|..+...|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667778888888888888888887763
No 313
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.82 E-value=69 Score=33.27 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE 227 (427)
Q Consensus 191 ~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (427)
+...+++.......|+..|...|+.++|+++|.+..+
T Consensus 496 e~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 496 EIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 3333333333334567777777777777777777665
No 314
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.44 E-value=4.1 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=10.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..+|...|+.+.|.+++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444555555555544443
No 315
>PRK09687 putative lyase; Provisional
Probab=81.36 E-value=38 Score=29.98 Aligned_cols=184 Identities=14% Similarity=0.076 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF-----GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
++...+..+... .++..+-...+.+++..+.. ..+...+..... .++..+-...+.++.+.++ .++...
T Consensus 90 ~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~ 163 (280)
T PRK09687 90 NVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPL 163 (280)
T ss_pred HHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHH
Confidence 455555554322 23444444555555544321 223333333222 2355566667777777776 455666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGLCKMG-WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 370 (427)
+-.+.+. +|...-...+.++.+.+ +...+...+..+.. .+|..+-...+.++.+.|+. .|...+-...+.+
T Consensus 164 L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~- 235 (280)
T PRK09687 164 LINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG- 235 (280)
T ss_pred HHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC-
Confidence 6666553 34444455555666543 23466666666664 34666667778888888874 5555555555542
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421 (427)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 421 (427)
+ .....+.++...|.. +|...+..+.+. .||...-...+.+|.+
T Consensus 236 --~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 236 --T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred --c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 2 234677888888885 688888888864 4577777777766643
No 316
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=81.09 E-value=64 Score=32.39 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=28.9
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHh--cCCCCCHHhHHHHHHHHHhc
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDS--TGFSPNPNSLELYIQCLCES 151 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~li~~~~~~ 151 (427)
|....=.+|-.|.|+|++++|.++..+ .........+-..+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 333444567778899999999888843 23344455666677777664
No 317
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.02 E-value=24 Score=27.55 Aligned_cols=51 Identities=16% Similarity=0.165 Sum_probs=24.7
Q ss_pred hcCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 281 KSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
..++++++..+++.|.-.... +...++- .-.+...|++++|..+++++.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence 355666666666665443211 1122222 22234556666666666666554
No 318
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.87 E-value=17 Score=30.53 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=55.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNTLIAG 383 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~ 383 (427)
|.+.-++.+.+.+.+.+++.+.++-.+.+ +.|..+-..+++.+|-.|++++|..-++-.-.. ...+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 45566778888899999999988877763 225556677888999999999998777665543 223345677777765
No 319
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=80.76 E-value=22 Score=27.00 Aligned_cols=59 Identities=15% Similarity=0.089 Sum_probs=26.8
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 045814 72 DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD 130 (427)
Q Consensus 72 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 130 (427)
|+..+...+..-.....+..+|..|..+.-..--..-|..-...+...|++++|.++++
T Consensus 65 D~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 65 DERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp -HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44444443333333335555555554433233334445555555555555555555543
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.43 E-value=27 Score=32.91 Aligned_cols=86 Identities=10% Similarity=0.039 Sum_probs=40.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360 (427)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 360 (427)
..|+++.+...+....+. +-....+..+++....+.|++++|..+-..|....+. ++.........--..|-++++.-
T Consensus 335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~ 412 (831)
T PRK15180 335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH 412 (831)
T ss_pred HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence 455555555555444322 1113344555555555556666666555555554443 22222222222233445555555
Q ss_pred HHHHHHHC
Q 045814 361 LHKEMLDK 368 (427)
Q Consensus 361 ~~~~m~~~ 368 (427)
.|+++...
T Consensus 413 ~wk~~~~~ 420 (831)
T PRK15180 413 YWKRVLLL 420 (831)
T ss_pred HHHHHhcc
Confidence 55555543
No 321
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=79.68 E-value=8.5 Score=23.40 Aligned_cols=33 Identities=15% Similarity=0.193 Sum_probs=21.5
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 045814 385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417 (427)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 417 (427)
.+.|-.+++..++++|.+.|+..+...+..+++
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 455666666677777766677666666666554
No 322
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.53 E-value=68 Score=31.73 Aligned_cols=176 Identities=13% Similarity=0.111 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHH--H-HHHcCChhHHHHHHHHHHh-------cc------hhHHHHHhcC----
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALL--G-CIKIDRTDLVWKLYHDLIE-------SG------YLIQAFCNDG---- 213 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~-~~~~~~~~~a~~~~~~~~~-------~~------~l~~~~~~~g---- 213 (427)
...|.+.++...+.|.. .......++. + +....+.+.|..+|+.+.+ .+ -+...|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 35677777776666533 2222222222 2 3355577777777777765 22 2455555432
Q ss_pred -ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH--HhcCChHHHH
Q 045814 214 -KVSEGYELLRQVLEDGLVPENTAFNKLISRFCE-KKNFGRVSELLHTMVARNRAPDNFTYEEVINGL--CKSRKRLEAY 289 (427)
Q Consensus 214 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~ 289 (427)
+.+.|..++....+.|.. +....-..+..... ..+...|.+.|......|..+ ..-+..++-.. ....+...|.
T Consensus 307 ~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~ 384 (552)
T KOG1550|consen 307 IDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAF 384 (552)
T ss_pred ccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHH
Confidence 456677777777776653 43333333222222 235667777777777776432 21121221111 1234667777
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045814 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334 (427)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 334 (427)
.++.+.-+.| .|...--...+..+.. ++.+.+...+..+.+.|
T Consensus 385 ~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 385 AYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred HHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 7777777766 2222222223333333 56666666655555554
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.97 E-value=6.5 Score=21.30 Aligned_cols=27 Identities=26% Similarity=0.257 Sum_probs=20.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566677777788888888888877665
No 324
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.92 E-value=25 Score=30.67 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=59.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK---- 281 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~---- 281 (427)
|.+++..+++.+++.+.-+.-+..-+........-|-.|.+.+....+.++-....+..-.-+...|..+...|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 7888888888888877666554333334445555566688888888888887777665333344457777666654
Q ss_pred -cCChHHHHHHH
Q 045814 282 -SRKRLEAYRVF 292 (427)
Q Consensus 282 -~~~~~~a~~~~ 292 (427)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 68888887776
No 325
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=78.79 E-value=46 Score=29.36 Aligned_cols=71 Identities=8% Similarity=0.059 Sum_probs=48.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CCCCCChhhH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-----KGYGETTVTY 377 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~ 377 (427)
+++.....|..+|.+.+|.++.+.....+ +.+...+-.++..++..|+--.|.+-++.+.+ .|+..|...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556677888888888888888887764 34666777788888888886666666665542 3666555444
No 326
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=78.78 E-value=30 Score=29.18 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=55.9
Q ss_pred CCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC---CHHhH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH
Q 045814 100 YGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP---NPNSL--ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173 (427)
Q Consensus 100 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~---~~~~~--~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 173 (427)
..+.+....+|.|+--|.-...+.+|-+.|.+ .++.| +..++ ..-|+.....|+.++|.+....+.-.-+.-|.
T Consensus 20 ~~~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 20 MKVSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred hccCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 34666667677766555554445556555554 66665 33333 34577788999999999988877543333343
Q ss_pred hhHHHHHH----HHHHcCChhHHHHHHH
Q 045814 174 KTWNSALL----GCIKIDRTDLVWKLYH 197 (427)
Q Consensus 174 ~~~~~ll~----~~~~~~~~~~a~~~~~ 197 (427)
..+-.|.. -.++.|..++|+++.+
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q 127 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQ 127 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333322 1334555555555443
No 327
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=78.67 E-value=6.2 Score=21.37 Aligned_cols=27 Identities=26% Similarity=0.087 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045814 140 SLELYIQCLCESGLIEEAFCAFSKLKE 166 (427)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 166 (427)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666777777777777777776654
No 328
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=78.51 E-value=74 Score=31.60 Aligned_cols=95 Identities=11% Similarity=0.088 Sum_probs=40.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 384 (427)
..|...+..+...++.. ...++.+...-.-.+.....-++..|.+.|-.+.|.++.+.+-..-. ...-|..-+.-+
T Consensus 373 ~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~ 448 (566)
T PF07575_consen 373 SLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWF 448 (566)
T ss_dssp TTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHH
Confidence 34555454444443322 44444544443333555666777778888888888888776654322 233466666667
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 045814 385 CLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~ 403 (427)
.++|+...+-.+-+.+.+.
T Consensus 449 ~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 449 IRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp H------------------
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 7777777766666555543
No 329
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=78.33 E-value=32 Score=30.05 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=56.9
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhc---------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 045814 177 NSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE- 246 (427)
Q Consensus 177 ~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~- 246 (427)
..=|.+++..+++.++..+.-+..+. ..-|-.|.+.|.+..+.++-.......-.-+...|.+++..|..
T Consensus 87 vvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 87 VVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 34467888888888887776555443 12466778889888888888777654333345568888777765
Q ss_pred ----cCChhHHHHHH
Q 045814 247 ----KKNFGRVSELL 257 (427)
Q Consensus 247 ----~~~~~~a~~~~ 257 (427)
.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 68888888877
No 330
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.65 E-value=14 Score=37.57 Aligned_cols=152 Identities=13% Similarity=0.131 Sum_probs=77.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHH
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A 157 (427)
.+|++.+-++.|++|.+.-..+ ...+.++|+++.|++.-.+.+ +..+|..|+......|+.+-|
T Consensus 628 aYLqKkgypeiAL~FVkD~~tR-------------F~LaLe~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~Ia 691 (1202)
T KOG0292|consen 628 AYLQKKGYPEIALHFVKDERTR-------------FELALECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIA 691 (1202)
T ss_pred HHHHhcCCcceeeeeecCcchh-------------eeeehhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHH
Confidence 4455555555555555443222 223456666666666655543 556677777766677777777
Q ss_pred HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch---hHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 045814 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---LIQAFCNDGKVSEGYELLRQVLEDGLVPEN 234 (427)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 234 (427)
+..|++.+. |+.|--.|.-.|+.++-.++.+....++- ......-.|+.++-.++++.. |..|
T Consensus 692 Em~yQ~~kn---------fekLsfLYliTgn~eKL~Km~~iae~r~D~~~~~qnalYl~dv~ervkIl~n~---g~~~-- 757 (1202)
T KOG0292|consen 692 EMCYQRTKN---------FEKLSFLYLITGNLEKLSKMMKIAEIRNDATGQFQNALYLGDVKERVKILENG---GQLP-- 757 (1202)
T ss_pred HHHHHHhhh---------hhheeEEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHHHhc---Cccc--
Confidence 666666553 22222333444555555555444433321 122222345555554444322 2221
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHhhC
Q 045814 235 TAFNKLISRFCEKKNFGRVSELLHTMVAR 263 (427)
Q Consensus 235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 263 (427)
..|.. ....|.-++|.++.++....
T Consensus 758 laylt----a~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 758 LAYLT----AAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHHHH----HhhcCcHHHHHHHHHhhccc
Confidence 12221 23356777888888877663
No 331
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=77.52 E-value=21 Score=29.93 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=57.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG--LLPNEYTYNSMIHG 348 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~ 348 (427)
|.+..++.+.+.+...+++...+.-.+.... |...=-.+++.+|-.|++++|..-++-.-... ..+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4566777888999999999998887776443 55566678899999999999998887766542 23345567777665
No 332
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.24 E-value=4.2 Score=20.78 Aligned_cols=20 Identities=35% Similarity=0.461 Sum_probs=10.9
Q ss_pred HHHHHHHhcCCHHHHHHHHH
Q 045814 379 TLIAGLCLHGRTDEAYHLFE 398 (427)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~ 398 (427)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34455555566655555543
No 333
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=77.11 E-value=4.7 Score=21.57 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 380 LIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+..++.+.|++++|.++|+++.+.
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 344555566666666666665553
No 334
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=76.85 E-value=18 Score=27.21 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=20.8
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 325 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
+-++.+...++.|++.....-+++|-+.+|+..|.++|+-++
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 333444444445555555555555555555555555555444
No 335
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=76.60 E-value=6.6 Score=23.39 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=9.9
Q ss_pred HHHHHccCCHHHHHHHHHHHHH
Q 045814 311 IHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~ 332 (427)
..+|...|+.+.|..++++...
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHH
Confidence 3444444444444444444443
No 336
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.95 E-value=43 Score=27.20 Aligned_cols=14 Identities=7% Similarity=0.040 Sum_probs=6.7
Q ss_pred CCChhhHHHHHHHH
Q 045814 371 GETTVTYNTLIAGL 384 (427)
Q Consensus 371 ~p~~~~~~~li~~~ 384 (427)
.|+...|+.-+...
T Consensus 110 ~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 110 DPNNELYRKSLEMA 123 (186)
T ss_dssp -TT-HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 45556665555544
No 337
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.84 E-value=60 Score=28.25 Aligned_cols=69 Identities=13% Similarity=0.135 Sum_probs=39.4
Q ss_pred cCCCCCHHhHHHHHHHH-HhcCChhHHHHHHHHHHhcCCCcCHhh---HHHHHHHHHHcCChhHHHHHHHHHH
Q 045814 132 TGFSPNPNSLELYIQCL-CESGLIEEAFCAFSKLKEMGVFGSIKT---WNSALLGCIKIDRTDLVWKLYHDLI 200 (427)
Q Consensus 132 ~~~~~~~~~~~~li~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~ 200 (427)
.+..||+..-|..-.+- .+...+++|+.-|++..+....-..+- ...++...-+.+++++....|.++.
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45567665544332221 234578899999998887543323333 3345555666666666666665554
No 338
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.70 E-value=42 Score=27.84 Aligned_cols=21 Identities=14% Similarity=0.142 Sum_probs=9.7
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 045814 313 GLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~ 333 (427)
+|.+..++++|+.=|.++.+.
T Consensus 177 ayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHh
Confidence 344444444444444444443
No 339
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.43 E-value=28 Score=35.50 Aligned_cols=158 Identities=13% Similarity=0.137 Sum_probs=105.9
Q ss_pred HHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChh
Q 045814 111 VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD 190 (427)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~ 190 (427)
++|..+.+.|-++-|+.+.+.-..+ ...+..+|+++.|++.-.++- +..+|..|.....+.|+.+
T Consensus 625 aiIaYLqKkgypeiAL~FVkD~~tR---------F~LaLe~gnle~ale~akkld------d~d~w~rLge~Al~qgn~~ 689 (1202)
T KOG0292|consen 625 AIIAYLQKKGYPEIALHFVKDERTR---------FELALECGNLEVALEAAKKLD------DKDVWERLGEEALRQGNHQ 689 (1202)
T ss_pred HHHHHHHhcCCcceeeeeecCcchh---------eeeehhcCCHHHHHHHHHhcC------cHHHHHHHHHHHHHhcchH
Confidence 4556666667666666665532211 233456789998888765552 6789999999999999999
Q ss_pred HHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814 191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF 270 (427)
Q Consensus 191 ~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 270 (427)
-|+..|+.....+-|--.|.-.|+.++-.++.+....++ |..+ ......-.|+.++-.++++.- |..| .
T Consensus 690 IaEm~yQ~~knfekLsfLYliTgn~eKL~Km~~iae~r~---D~~~---~~qnalYl~dv~ervkIl~n~---g~~~--l 758 (1202)
T KOG0292|consen 690 IAEMCYQRTKNFEKLSFLYLITGNLEKLSKMMKIAEIRN---DATG---QFQNALYLGDVKERVKILENG---GQLP--L 758 (1202)
T ss_pred HHHHHHHHhhhhhheeEEEEEeCCHHHHHHHHHHHHhhh---hhHH---HHHHHHHhccHHHHHHHHHhc---Cccc--H
Confidence 999999999999888888999999988877766654332 2111 111222357777777777643 2221 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
.|- .....|.-++|.++.++....
T Consensus 759 ayl----ta~~~G~~~~ae~l~ee~~~~ 782 (1202)
T KOG0292|consen 759 AYL----TAAAHGLEDQAEKLGEELEKQ 782 (1202)
T ss_pred HHH----HHhhcCcHHHHHHHHHhhccc
Confidence 221 123567888999998888653
No 340
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=72.94 E-value=13 Score=33.32 Aligned_cols=52 Identities=12% Similarity=0.070 Sum_probs=36.8
Q ss_pred HHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814 114 DSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLK 165 (427)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 165 (427)
.-|.++|.+++|++.+.. +...| |++++..-..+|.+.+.|..|+.=-....
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 345678888888888876 56666 77777777778888877776665444443
No 341
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=72.89 E-value=27 Score=26.51 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=22.2
Q ss_pred cCChHHHHHHHHhcCCCC-CHHhHHHHHHHHHhcCChhHHHHHHH
Q 045814 119 ARAFKVAMDFLDSTGFSP-NPNSLELYIQCLCESGLIEEAFCAFS 162 (427)
Q Consensus 119 ~~~~~~a~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~ 162 (427)
.+++.+....+...++-. -+.-|......+-..|++.+|.++|+
T Consensus 79 ~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 79 CDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred cCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444444433322 23345555555566666666666664
No 342
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=71.87 E-value=79 Score=28.77 Aligned_cols=66 Identities=12% Similarity=-0.031 Sum_probs=50.0
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP---NEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
....+|..+...+.+.|.++.|...+..+...+... +....-.-.+..-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355688899999999999999999999988754221 233344445666678899999998888776
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.41 E-value=13 Score=25.36 Aligned_cols=17 Identities=12% Similarity=0.120 Sum_probs=6.8
Q ss_pred HHHHHHHHHccCCHHHH
Q 045814 307 YTTVIHGLCKMGWLGDA 323 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a 323 (427)
+..++.+|+..|+++++
T Consensus 46 lG~l~qA~~e~Gkyr~~ 62 (80)
T PF10579_consen 46 LGYLIQAHMEWGKYREM 62 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 344
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=71.28 E-value=62 Score=27.29 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=33.9
Q ss_pred hHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045814 122 FKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170 (427)
Q Consensus 122 ~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 170 (427)
+..|.-=|.+ ..+.|+ +..||.|.--+...|+++.|.+.|+...+....
T Consensus 81 ~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~ 131 (297)
T COG4785 81 RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 131 (297)
T ss_pred HHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc
Confidence 3333333333 345665 567888888888899999999999888876443
No 345
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=70.62 E-value=35 Score=25.83 Aligned_cols=61 Identities=10% Similarity=0.069 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 045814 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417 (427)
Q Consensus 356 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 417 (427)
-+..+-+..+...++-|++.....-++++.+.+++..|.++|+-.+.+ +.+....|-.+++
T Consensus 66 wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 66 WEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 355666777777889999999999999999999999999999999876 2222234655554
No 346
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=69.88 E-value=84 Score=28.25 Aligned_cols=176 Identities=17% Similarity=0.141 Sum_probs=0.0
Q ss_pred CChhHHHHHHHHHhhCCCCC-------------CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHH
Q 045814 248 KNFGRVSELLHTMVARNRAP-------------DNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHG 313 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~~~~~-------------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~ 313 (427)
++.+....++..+.+.+..| |...++.+... +..+.++-.+..++..+. |-.--...+-.....
T Consensus 36 ~~~~~~e~l~~~Ird~~Map~Ye~lce~~~i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeY 113 (393)
T KOG0687|consen 36 QKAAAREKLLAAIRDEDMAPLYEYLCESLVIKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEY 113 (393)
T ss_pred cCHHHHHHHHHHHHhcccchHHHHHHhhcceeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Q ss_pred HHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH--HHh
Q 045814 314 LCKMGWLGDARKMWFEMIHK----GLLPNEYTYNSMIH-GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG--LCL 386 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~ 386 (427)
||+.|+.+.|++.+.+..+. |.+.|...+.+=+. .|....-+.+-.+..+.+.+.|...+...=-..-.+ +..
T Consensus 114 ycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~ms 193 (393)
T KOG0687|consen 114 YCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMS 193 (393)
T ss_pred HHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
..++.+|-.+|-+....=-.-...+|..++.--.-.|.+
T Consensus 194 vR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i 232 (393)
T KOG0687|consen 194 VRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLI 232 (393)
T ss_pred HHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhh
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.67 E-value=1.4e+02 Score=30.81 Aligned_cols=191 Identities=13% Similarity=0.010 Sum_probs=99.9
Q ss_pred HHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHH---HHH--HHH
Q 045814 209 FCNDGKVSEGYELLRQVLED----GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE---EVI--NGL 279 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll--~~~ 279 (427)
....|++++|.++.+..... -..+....+..+..+..-.|++++|..+..+..+..-.-++..+. .+. ..+
T Consensus 468 al~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il 547 (894)
T COG2909 468 ALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEIL 547 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 34567778887777766542 234466677777788888899999988887665542222333222 222 234
Q ss_pred HhcCC--hHHHHHHHHHHHhC--CCC----CChhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHH
Q 045814 280 CKSRK--RLEAYRVFNDLKER--GYV----PDTVMYTTVIHGLCKM-GWLGDARKMWFEMIHKGLLPNEYTY--NSMIHG 348 (427)
Q Consensus 280 ~~~~~--~~~a~~~~~~m~~~--~~~----p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~ 348 (427)
...|. ..+.+..|...... .-+ +-..++..++.++.+. +...++..-+.--......|-...+ ..++..
T Consensus 548 ~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l 627 (894)
T COG2909 548 EAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAEL 627 (894)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHH
Confidence 45662 33334444443221 111 1223444444555441 1122222222222222222222222 367778
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCC----ChhhHHHHHHH--HHhcCCHHHHHHHHHH
Q 045814 349 YCRIDNLEEAKRLHKEMLDKGYGE----TTVTYNTLIAG--LCLHGRTDEAYHLFEE 399 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~ 399 (427)
+...|++++|...++++......+ +-..-...+.. -...|+..+|.....+
T Consensus 628 ~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 628 EFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 888999999999999887653333 22222222222 2356777777776665
No 348
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=69.29 E-value=13 Score=30.70 Aligned_cols=34 Identities=26% Similarity=0.285 Sum_probs=19.3
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045814 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166 (427)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 166 (427)
...|++..|..++..+...|+.++|.+..+++..
T Consensus 139 ~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 139 RRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3345555555555555556666666555555554
No 349
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.82 E-value=1.4e+02 Score=30.37 Aligned_cols=56 Identities=18% Similarity=-0.006 Sum_probs=31.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCc---CHhhHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 045814 145 IQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLGCIKIDRTDLVWKLYHDLIES 202 (427)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 202 (427)
|+.+.+.+.+++|+++-+.... ..| ....+...+..+...|++++|-...-.|...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn 421 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN 421 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc
Confidence 5556666666666665544332 222 2345555666666666666666665555443
No 350
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=68.81 E-value=24 Score=27.57 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=41.3
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 361 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+.+.+.+.|++++.. =..+++.+...++.-.|.++++++.+.+...+..|..--++.+...|-+
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 444555566654432 2345566666666677777777777777777777777777777777654
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=68.78 E-value=1.5e+02 Score=30.68 Aligned_cols=196 Identities=11% Similarity=0.036 Sum_probs=89.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHccCChhHHHHHHHHHhhC----CCCCCHhhHHHHHH
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENT-------AFNKLIS-RFCEKKNFGRVSELLHTMVAR----NRAPDNFTYEEVIN 277 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~ 277 (427)
....++++|..++.++...-..|+.. .++.|-. .....|+.+.|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34566777777766665432222111 2222221 122356666666666655443 12334455556666
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHH---HH--HHHHccCCHH--HHHHHHHHHHHc-----CC-CCCHHHHHH
Q 045814 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT---VI--HGLCKMGWLG--DARKMWFEMIHK-----GL-LPNEYTYNS 344 (427)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---li--~~~~~~g~~~--~a~~~~~~m~~~-----~~-~p~~~~~~~ 344 (427)
+..-.|++++|..+.....+..-.-++..+.. +. ..+...|+.. +.+.-+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 66667777777766665544322223322222 21 1233445222 222222222111 00 111233444
Q ss_pred HHHHHhhcC-CHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045814 345 MIHGYCRID-NLEEAKRLHKEMLDKGYGETTVT--YNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405 (427)
Q Consensus 345 li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (427)
+..++.+.. ...++..-+.-.......|-... +..|...+...|+.++|...++++.....
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 444444421 11112111221111111121222 23677888899999999999999877533
No 352
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=68.71 E-value=19 Score=24.55 Aligned_cols=46 Identities=15% Similarity=0.128 Sum_probs=23.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGET--TVTYNTLIAGLCLHGRTDEAYHL 396 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~ 396 (427)
...+-++|...|....+.-..+. -.++..++.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666555422211 13445555666666666665544
No 353
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.41 E-value=67 Score=26.54 Aligned_cols=125 Identities=10% Similarity=0.155 Sum_probs=79.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH-----HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT-----VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 344 (427)
..|..++.... .+.+ +.....+.+.... ...+|.. +...+...|++++|..-++..... |....+..
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~ 126 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENLKA 126 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHHHH
Confidence 44555555543 3333 4455555555542 2334433 335677889999999988877654 23333333
Q ss_pred -----HHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045814 345 -----MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 345 -----li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (427)
|.+.....|.+++|...++...+.++ .......-.+.+...|+-++|..-|++....+
T Consensus 127 l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 127 LAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34556778899999999888776543 22333444678888999999999999888875
No 354
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=67.67 E-value=45 Score=30.09 Aligned_cols=91 Identities=11% Similarity=0.080 Sum_probs=51.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
...|.+.|.+++|++.|......... +.+++..-..+|.+...+..|+.=....+..+- .-+..|+.-+.+-...|+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence 46678888888888888776654322 667777777778877777766655554443320 0112333333333334455
Q ss_pred HHHHHHHHHHHhC
Q 045814 286 LEAYRVFNDLKER 298 (427)
Q Consensus 286 ~~a~~~~~~m~~~ 298 (427)
.+|.+-++..++.
T Consensus 182 ~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 182 MEAKKDCETVLAL 194 (536)
T ss_pred HHHHHhHHHHHhh
Confidence 5555555555444
No 355
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=67.17 E-value=6.5 Score=29.91 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=15.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (427)
-|.-..|..+|.+|++.|-.|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 3444455556666666655554 34444443
No 356
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=66.98 E-value=88 Score=27.36 Aligned_cols=58 Identities=10% Similarity=-0.020 Sum_probs=24.3
Q ss_pred HcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHH----HHHHHhcCCCcCHhhHHHHHHHHHHcC
Q 045814 118 EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA----FSKLKEMGVFGSIKTWNSALLGCIKID 187 (427)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~ 187 (427)
+++++++|.+++.+- ...+.+.|+...|-++ .+...+.+.+.|......++..+...+
T Consensus 2 ~~kky~eAidLL~~G------------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~ 63 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG------------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFP 63 (260)
T ss_dssp HTT-HHHHHHHHHHH------------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-
T ss_pred ccccHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 456677777766431 2223344444333322 233333455555555555555554443
No 357
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.84 E-value=72 Score=26.35 Aligned_cols=53 Identities=17% Similarity=0.075 Sum_probs=22.4
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
....|.+++|...++.....+.. ......-.+.+...|+-++|..-|....+.
T Consensus 136 q~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 136 QLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444444444444444333221 122223334444445555555555444444
No 358
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=66.50 E-value=35 Score=33.72 Aligned_cols=91 Identities=14% Similarity=0.116 Sum_probs=61.1
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhcCCHH------HHHHHHHHHHHCCCCCChhhHHHH
Q 045814 309 TVIHGLCKMGWLGDARKMWFEMIHK--GLLPNEYTYNSMIHGYCRIDNLE------EAKRLHKEMLDKGYGETTVTYNTL 380 (427)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 380 (427)
+++.+|..+|++-.+.++++..... |-+.=...||..|+.+.+.|.++ .|.+.++... +.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7889999999999999999888754 33333456888888888888653 3445555444 34478888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+.+-..--.-.-..-++.+...
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8775554333344445544443
No 359
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=66.19 E-value=62 Score=25.38 Aligned_cols=90 Identities=11% Similarity=0.080 Sum_probs=51.6
Q ss_pred HccCChhHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHH
Q 045814 245 CEKKNFGRVSELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (427)
...++.+++..+++.|.-..+ .+...++...+ +...|++++|.++|+++.+.+. ...|...+.++|-.-.-|-.
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~~---~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSAG---APPYGKALLALCLNAKGDAE 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccCC---CchHHHHHHHHHHHhcCChH
Confidence 347888888888888876533 22333444443 4688999999999999887642 23455555555543322333
Q ss_pred HHHH-HHHHHcCCCCCH
Q 045814 324 RKMW-FEMIHKGLLPNE 339 (427)
Q Consensus 324 ~~~~-~~m~~~~~~p~~ 339 (427)
++.+ +++.+.+-.|+.
T Consensus 96 Wr~~A~~~le~~~~~~a 112 (153)
T TIGR02561 96 WHVHADEVLARDADADA 112 (153)
T ss_pred HHHHHHHHHHhCCCHhH
Confidence 3322 334444444443
No 360
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=65.21 E-value=99 Score=27.33 Aligned_cols=26 Identities=8% Similarity=0.134 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDL 295 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m 295 (427)
..+..+...|++.++.+.+.+...+.
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~~~ 141 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMRRL 141 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 34445555555555555555544443
No 361
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.12 E-value=88 Score=26.74 Aligned_cols=19 Identities=16% Similarity=0.205 Sum_probs=9.9
Q ss_pred hcCChhHHHHHHHHHHHCC
Q 045814 211 NDGKVSEGYELLRQVLEDG 229 (427)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~ 229 (427)
..+++.+|.++|++.....
T Consensus 166 ~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555443
No 362
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=65.00 E-value=78 Score=26.07 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHH
Q 045814 317 MGWLGDARKMWFEMI 331 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~ 331 (427)
.|+++.|..+++-|.
T Consensus 134 ~~~~~~Ae~~~~~ME 148 (204)
T COG2178 134 KGSFEEAERFLKFME 148 (204)
T ss_pred hccHHHHHHHHHHHH
Confidence 344444444444443
No 363
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=64.82 E-value=36 Score=27.45 Aligned_cols=38 Identities=13% Similarity=0.063 Sum_probs=18.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814 387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424 (427)
Q Consensus 387 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 424 (427)
.++.-.|.++++.+.+.+..++..|..--+..+.+.|-
T Consensus 38 ~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 38 QPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred cCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34444455555555555544555555555555555443
No 364
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.77 E-value=1.3e+02 Score=28.38 Aligned_cols=17 Identities=6% Similarity=0.006 Sum_probs=7.8
Q ss_pred HHHHHHcCChHHHHHHH
Q 045814 113 FDSLVEARAFKVAMDFL 129 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~ 129 (427)
+...++.|+.+-+.-++
T Consensus 39 L~~A~~~~~~~~v~~Ll 55 (413)
T PHA02875 39 IKLAMKFRDSEAIKLLM 55 (413)
T ss_pred HHHHHHcCCHHHHHHHH
Confidence 34444555555443333
No 365
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=64.58 E-value=51 Score=23.83 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399 (427)
Q Consensus 320 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (427)
-++|..+-+-+...+-. ....--+-+..+...|++++|..+.+.+ ..||...|-+|-. .+.|..+++..-+.+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~r 93 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNR 93 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 45555555554443311 1111112233455666777776666554 3566666665543 356666666666666
Q ss_pred HHHCC
Q 045814 400 MAQKG 404 (427)
Q Consensus 400 m~~~g 404 (427)
|..+|
T Consensus 94 la~sg 98 (115)
T TIGR02508 94 LAASG 98 (115)
T ss_pred HHhCC
Confidence 66554
No 366
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=64.58 E-value=98 Score=27.04 Aligned_cols=84 Identities=13% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCC-CCC-----CHHHHHHHHHHHHccCChhH
Q 045814 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG-LVP-----ENTAFNKLISRFCEKKNFGR 252 (427)
Q Consensus 179 ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~-----~~~~~~~li~~~~~~~~~~~ 252 (427)
++..|.|.-+...-..+|+.+-.-.-+...|.+.|+++.|-.++--+...+ ... +...-..++......++|+-
T Consensus 159 Ivv~C~RKtE~~~W~~LF~~lg~P~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~L 238 (258)
T PF07064_consen 159 IVVNCARKTEVRYWPYLFDYLGSPRDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDL 238 (258)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCHHHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHH
Confidence 333344433333333344333222234455555566555555444443222 111 12222334444444555555
Q ss_pred HHHHHHHHhh
Q 045814 253 VSELLHTMVA 262 (427)
Q Consensus 253 a~~~~~~m~~ 262 (427)
+.++.+-+..
T Consensus 239 c~eL~RFL~~ 248 (258)
T PF07064_consen 239 CFELVRFLKA 248 (258)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 367
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.24 E-value=1.7e+02 Score=29.77 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=26.5
Q ss_pred HHHHHHcCChHHHHHHHHhc-CCCC---CHHhHHHHHHHHHhcCChhHHHHHHHHH
Q 045814 113 FDSLVEARAFKVAMDFLDST-GFSP---NPNSLELYIQCLCESGLIEEAFCAFSKL 164 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m 164 (427)
++-+.+.+.+++|+++.+.. |..| -...+...|..+.-.|++++|-...-.|
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m 418 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKM 418 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHH
Confidence 33445556666666666552 3333 1234555566666556655554443333
No 368
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=63.13 E-value=19 Score=23.34 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=9.3
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 045814 310 VIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m 330 (427)
+|.++.+.|++++|.++++++
T Consensus 29 vI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHH
Confidence 444444444444444444444
No 369
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.93 E-value=45 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.274 Sum_probs=17.5
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.|++.+|..++..+...|+.++|.++.+++..
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35555555555555555555555555555554
No 370
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=62.86 E-value=23 Score=22.87 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
---.+|.+|...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334456666666666666666666554
No 371
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=62.78 E-value=1.6e+02 Score=28.76 Aligned_cols=94 Identities=13% Similarity=0.135 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhcCCCCC-HHhH---HHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPN-PNSL---ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 183 (427)
....++.-|.+.+++++|..++..|...-. ...| +.+...+.+..--++.+..++.+...=..|....-.....-|
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey 489 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEY 489 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHH
Confidence 445677789999999999999998865432 3334 444556666665666666677666554444333333333333
Q ss_pred HHcCChhHHHHHHHHHHhc
Q 045814 184 IKIDRTDLVWKLYHDLIES 202 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~ 202 (427)
.. .=.+-|.++|..+...
T Consensus 490 ~d-~V~~~aRRfFhhLLR~ 507 (545)
T PF11768_consen 490 RD-PVSDLARRFFHHLLRY 507 (545)
T ss_pred HH-HHHHHHHHHHHHHHHh
Confidence 22 2223456666666543
No 372
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=62.66 E-value=17 Score=32.07 Aligned_cols=30 Identities=20% Similarity=0.283 Sum_probs=16.9
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 371 (427)
|+..|..-.+.||+++|++++++.++.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345555555555666666666655555544
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=62.46 E-value=84 Score=25.60 Aligned_cols=117 Identities=12% Similarity=0.134 Sum_probs=53.5
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc---CChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI---DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 230 (427)
++.|.+.++.-...+.. |...++....++... ....++.++++ +|+.-|++.+...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~mie-------------------dAisK~eeAL~I~P 66 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIE-------------------DAISKFEEALKINP 66 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHH-------------------HHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHH-------------------HHHHHHHHHHhcCC
Confidence 45566666554444333 555555444444333 33344544444 34444455444322
Q ss_pred CCCHHHHHHHHHHHHcc----CC-------hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814 231 VPENTAFNKLISRFCEK----KN-------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~~----~~-------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 299 (427)
. ...++..+..++... .+ +++|.+.|+..... +|+..+|+.-+.... +|-++..++.+.+
T Consensus 67 ~-~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~~------kap~lh~e~~~~~ 137 (186)
T PF06552_consen 67 N-KHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMAA------KAPELHMEIHKQG 137 (186)
T ss_dssp T--HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred c-hHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH------hhHHHHHHHHHHH
Confidence 2 234555555555432 22 33444444444433 677777777776652 3556666665554
No 374
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=62.34 E-value=32 Score=20.84 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=15.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
+.|-.+++..+++.|.+.|+..+...|..++
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L 44 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEIL 44 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHH
Confidence 3444445555555555555544444444443
No 375
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=61.37 E-value=18 Score=26.86 Aligned_cols=46 Identities=15% Similarity=0.148 Sum_probs=28.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
++..+...+..-.|.++++.+.+.+..++..|..-.++.+.+.|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 3444444555556667777776666666666666666666666643
No 376
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=61.07 E-value=97 Score=25.82 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=60.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 278 GLCKSRKRLEAYRVFNDLKERGYVP----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
-+.+.|++++|..-|...++.-... -...|..-..++.+.+.++.|+.-..+.++.+.. .......-..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 4567788888888888777652211 1234444556777888888888888888776422 2223333345788888
Q ss_pred CHHHHHHHHHHHHHC
Q 045814 354 NLEEAKRLHKEMLDK 368 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~ 368 (427)
.+++|+.=|+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 899999999998886
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=61.03 E-value=17 Score=18.31 Aligned_cols=27 Identities=22% Similarity=0.124 Sum_probs=15.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045814 140 SLELYIQCLCESGLIEEAFCAFSKLKE 166 (427)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 166 (427)
.|..+...+...++++.|...|+...+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 344555566666666666666655543
No 378
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=60.70 E-value=1e+02 Score=26.04 Aligned_cols=159 Identities=14% Similarity=0.014 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CChhhHHHHHH
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIH 312 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~ 312 (427)
+.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|.. .-.|++.-|.+-|...-+.... |-...|--++
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 446777776777778888888888877766443333333333332 2356777776666665544322 1111222111
Q ss_pred HHHccCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHCCCCCC-------hhhHHHHHHH
Q 045814 313 GLCKMGWLGDARKMWF-EMIHKGLLPNEYTYNSMIH-GYCRIDNLEEAKRLHKEMLDKGYGET-------TVTYNTLIAG 383 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~~~~~li~~ 383 (427)
.+.-++.+|..-+. +.... |..-|...|- .|...=.. +.+++.+... -.-+ ..||--|.+-
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~---e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISE---ETLMERLKAD-ATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccH---HHHHHHHHhh-ccchHHHHHHHHHHHHHHHHH
Confidence 13334555544332 22221 3233332222 22211111 1222222211 1101 2455566666
Q ss_pred HHhcCCHHHHHHHHHHHHHCC
Q 045814 384 LCLHGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g 404 (427)
|...|+.++|..+|+-....+
T Consensus 247 ~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 247 YLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HhccccHHHHHHHHHHHHHHh
Confidence 777777777777777766543
No 379
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=60.62 E-value=1.1e+02 Score=26.26 Aligned_cols=103 Identities=17% Similarity=0.148 Sum_probs=64.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-C-----------CCCCHHHHHHHH
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-G-----------LLPNEYTYNSMI 346 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-----------~~p~~~~~~~li 346 (427)
|.+..+..--.++.+-....++.-+..-..+++ +...|+..+|+.-++.-... | -.|.+.....++
T Consensus 169 ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml 246 (333)
T KOG0991|consen 169 YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKML 246 (333)
T ss_pred hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHH
Confidence 444444444445555455555544444444333 45689999998888776533 1 136666667777
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
..|. .+++++|.+++.++.+.|+.|. ...+.+.+.+-
T Consensus 247 ~~~~-~~~~~~A~~il~~lw~lgysp~-Dii~~~FRv~K 283 (333)
T KOG0991|consen 247 QACL-KRNIDEALKILAELWKLGYSPE-DIITTLFRVVK 283 (333)
T ss_pred HHHH-hccHHHHHHHHHHHHHcCCCHH-HHHHHHHHHHH
Confidence 7654 5689999999999999998865 34455555543
No 380
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=60.43 E-value=59 Score=26.22 Aligned_cols=67 Identities=13% Similarity=0.002 Sum_probs=46.1
Q ss_pred hHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh
Q 045814 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189 (427)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 189 (427)
.+.+.+++++.|.+.+..=. .++..+...+..-.|.++++.+.+.+...+..|.-.-|..+.+.|-+
T Consensus 10 ~~~~~~~L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 10 LAQAEKLCAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 45566777777776665433 34444445567788999999999988777777766666777666644
No 381
>PRK11619 lytic murein transglycosylase; Provisional
Probab=60.43 E-value=2e+02 Score=29.18 Aligned_cols=99 Identities=10% Similarity=0.091 Sum_probs=63.3
Q ss_pred HHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045814 91 RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170 (427)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 170 (427)
++-..+.+..+.+.....=..-+..+.+.+++......+... +.+...-.....+....|+.++|......+=..|-.
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~--p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~ 161 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK--PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS 161 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC
Confidence 344444333334444444455566777888988888733222 345566677788888889988787776666544433
Q ss_pred cCHhhHHHHHHHHHHcCChhHH
Q 045814 171 GSIKTWNSALLGCIKIDRTDLV 192 (427)
Q Consensus 171 p~~~~~~~ll~~~~~~~~~~~a 192 (427)
.....+.++..+.+.|.....
T Consensus 162 -~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 162 -LPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred -CChHHHHHHHHHHHcCCCCHH
Confidence 566788888888877765543
No 382
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.20 E-value=1.2e+02 Score=26.55 Aligned_cols=193 Identities=14% Similarity=0.128 Sum_probs=110.5
Q ss_pred cCCCcCHhhHHHHHHHH-HHcCChhHHHHHHHHHHhc-------c-----hhHHHHHhcCChhHHHHHHHHHHHC---CC
Q 045814 167 MGVFGSIKTWNSALLGC-IKIDRTDLVWKLYHDLIES-------G-----YLIQAFCNDGKVSEGYELLRQVLED---GL 230 (427)
Q Consensus 167 ~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~-------~-----~l~~~~~~~g~~~~a~~~~~~~~~~---~~ 230 (427)
.+-.||+..-|..-.+- .+..+.++|+.-|++.++. | -++..+.+.|++++..+.+.++... .+
T Consensus 20 s~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAV 99 (440)
T KOG1464|consen 20 SNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAV 99 (440)
T ss_pred cCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 34566665444322211 2344778888888887764 2 2777888888888888888877531 11
Q ss_pred --CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-----CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-
Q 045814 231 --VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-----NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP- 302 (427)
Q Consensus 231 --~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p- 302 (427)
.-+..+.|+++..-+...+.+-..+.++.-.+. +-..=-.|-+-+.+.|...+.+.+..+++.++.+.-..-
T Consensus 100 TrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed 179 (440)
T KOG1464|consen 100 TRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED 179 (440)
T ss_pred hccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc
Confidence 124456677777666666666655555533321 111111234566777777778887777777775431110
Q ss_pred ----------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----hcCCHHHHHH
Q 045814 303 ----------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYC-----RIDNLEEAKR 360 (427)
Q Consensus 303 ----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~-----~~g~~~~a~~ 360 (427)
=...|..=|+.|....+-.....+|++..... --|.+.... +|+-|. +.|++++|..
T Consensus 180 GedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 180 GEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred CchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHh
Confidence 13356666777777777777777777665442 223443333 344332 4466666654
No 383
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=59.52 E-value=3.5e+02 Score=31.77 Aligned_cols=302 Identities=11% Similarity=-0.040 Sum_probs=150.1
Q ss_pred hcCChHHHHHHHHHHhh-cCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 045814 82 QQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 160 (427)
+++.+..|+..++.-.. ...-.-....|-.+...|+..++++....+.......|+ ....|......|++..|...
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~C 1471 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAAC 1471 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHH
Confidence 45556666666655210 000112233444555588899998888777653211222 22345556678999999999
Q ss_pred HHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc---------chhHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045814 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLV 231 (427)
Q Consensus 161 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 231 (427)
|+.+.+.+.. ...+++-++......+.++.+....+-.... +.=..+--+.++++.....+. +.
T Consensus 1472 ye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~--- 1544 (2382)
T KOG0890|consen 1472 YERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DR--- 1544 (2382)
T ss_pred HHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc---
Confidence 9999987433 4667887777777777777666655444332 112223356677776666554 11
Q ss_pred CCHHHHHHH--HHHHHc--cCChhHHHHHHHHHhhCCCCC--------C-HhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 232 PENTAFNKL--ISRFCE--KKNFGRVSELLHTMVARNRAP--------D-NFTYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 232 ~~~~~~~~l--i~~~~~--~~~~~~a~~~~~~m~~~~~~~--------~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
+..+|... .....+ ..|.-.-.+.++-+.+.-+.| + ...|..+++...-..- ....+...
T Consensus 1545 -n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el----~~~~~~l~-- 1617 (2382)
T KOG0890|consen 1545 -NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL----ENSIEELK-- 1617 (2382)
T ss_pred -cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH----HHHHHHhh--
Confidence 22233332 222222 222222223333333221111 0 1233444333222111 11111111
Q ss_pred CCCCChh------hHHHHHHHHHccCCHHHHHHHH-HHHHHcCCCC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 299 GYVPDTV------MYTTVIHGLCKMGWLGDARKMW-FEMIHKGLLP-----NEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 299 ~~~p~~~------~~~~li~~~~~~g~~~~a~~~~-~~m~~~~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
+..++.. -|-.-+..-....+..+-+--+ +.+......| -..+|-...+..-..|+++.|...+-...
T Consensus 1618 ~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~ 1697 (2382)
T KOG0890|consen 1618 KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAK 1697 (2382)
T ss_pred ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhh
Confidence 1111111 1111111111111111111111 1111111111 23467777777777899999988777766
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 367 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+.+ -+..+-...+-....|+...|+.++++..+.
T Consensus 1698 e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1698 ESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred hcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 654 2345566677788899999999999888754
No 384
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=59.17 E-value=1.3e+02 Score=26.81 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=10.2
Q ss_pred hHHHHHHHHHhcCChHH
Q 045814 271 TYEEVINGLCKSRKRLE 287 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~ 287 (427)
+|..|+.+++..|+.+-
T Consensus 323 ~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSEL 339 (412)
T ss_pred hhhHHHHHHhcCChHHH
Confidence 45666666666666554
No 385
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=58.43 E-value=21 Score=31.51 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=17.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 336 (427)
|+..|....+.||+++|+.++++..+.|+.
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 445566666666666666666666666544
No 386
>PRK09462 fur ferric uptake regulator; Provisional
Probab=58.33 E-value=52 Score=25.79 Aligned_cols=37 Identities=14% Similarity=0.206 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 32 ~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 4555666666666666555666666666666665543
No 387
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=58.17 E-value=68 Score=28.53 Aligned_cols=71 Identities=17% Similarity=0.314 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----------cCCHHHH
Q 045814 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL----------HGRTDEA 393 (427)
Q Consensus 324 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~A 393 (427)
.++|+.+.+.++.|.-+.+.-+.-.+.+.=.+.....+|+.+.. |..-|..|+..||. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 45666677777777777766666666666677777777777765 33335566655553 3555555
Q ss_pred HHHHHH
Q 045814 394 YHLFEE 399 (427)
Q Consensus 394 ~~~~~~ 399 (427)
.++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 555543
No 388
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=57.79 E-value=2.1e+02 Score=28.76 Aligned_cols=21 Identities=24% Similarity=0.373 Sum_probs=12.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCC
Q 045814 314 LCKMGWLGDARKMWFEMIHKGLLP 337 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~~~~p 337 (427)
+...|++++|++.++++ ++-|
T Consensus 515 ~~~~g~~~~AL~~i~~L---~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKL---DLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHT---T-S-
T ss_pred HHHcCCHHHHHHHHHhC---CCCC
Confidence 45678898888766664 4555
No 389
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=57.76 E-value=2.2e+02 Score=28.92 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=10.8
Q ss_pred HHHcCChHHHHHHHHh
Q 045814 116 LVEARAFKVAMDFLDS 131 (427)
Q Consensus 116 ~~~~~~~~~a~~~~~~ 131 (427)
....|+...|.++++.
T Consensus 367 vIH~G~~~~~~~ll~p 382 (929)
T KOG2062|consen 367 VIHRGHENQAMKLLAP 382 (929)
T ss_pred eeeccccchHHHHhhh
Confidence 3466777777777764
No 390
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=56.55 E-value=2.1e+02 Score=28.17 Aligned_cols=175 Identities=15% Similarity=0.081 Sum_probs=111.0
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 045814 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLV--PENTAFNKLI 241 (427)
Q Consensus 172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li 241 (427)
+..+|+.-+..-.+.|+.+.+.-+|+...-.-. .+.-....|+.+-|..++....+--.+ |......+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 457888888999999999999999988765421 233333448888888777766654333 3333333332
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCChHHHHH---HHHHHHhCCCCCChhhHHHHHHHHH--
Q 045814 242 SRFCEKKNFGRVSELLHTMVARNRAPDN-FTYEEVINGLCKSRKRLEAYR---VFNDLKERGYVPDTVMYTTVIHGLC-- 315 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~---~~~~m~~~~~~p~~~~~~~li~~~~-- 315 (427)
.-..|++..|..+++...+.- |+. ..-..-+....+.|..+.+.. ++..... |.. +....+.+.--++
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~-~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKE-NNGILEKLYVKFARL 449 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-ccc-CcchhHHHHHHHHHH
Confidence 334689999999999988774 443 233334455667788887773 3333322 211 2233333332222
Q ss_pred ---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 316 ---KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 316 ---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
-.++.+.|..++.++... ++++...|..+++.+...+
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 357889999999999876 4667777888887766555
No 391
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=56.11 E-value=94 Score=24.28 Aligned_cols=66 Identities=20% Similarity=0.093 Sum_probs=46.6
Q ss_pred hHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCC
Q 045814 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188 (427)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 188 (427)
...+.+.+++.|++++.. -..++..+.+.+..-.|.++|+.+.+.+...+..|.-.-++.+...|-
T Consensus 5 ~~~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 5 LEDAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHHHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 455677777777765543 234567777777779999999999998877766665555666666553
No 392
>PRK09857 putative transposase; Provisional
Probab=56.01 E-value=1.1e+02 Score=27.32 Aligned_cols=64 Identities=11% Similarity=0.141 Sum_probs=30.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
.++......++.++..++++.+.+. .+......-++..-+...|..+++.++.++|...|+.++
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3333333444444444555444433 222222333444444445555566666777766666644
No 393
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=55.78 E-value=2.1e+02 Score=28.09 Aligned_cols=185 Identities=14% Similarity=0.018 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
+..+|..-+..-.+.|+.+.+.-+|++..-.--. =...|-..+.-....|+.+-|..++....+--++-...+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4456777777777778887777777765422100 112233333334444787777777776655433322222111112
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCCHHHHH---HHHHHHHHCCCCCChhhHHHHHHH-----
Q 045814 313 GLCKMGWLGDARKMWFEMIHKGLLPNEY-TYNSMIHGYCRIDNLEEAK---RLHKEMLDKGYGETTVTYNTLIAG----- 383 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~---~~~~~m~~~~~~p~~~~~~~li~~----- 383 (427)
-.-..|+++.|..+++.....- |+.. .-..-+....+.|+.+.+. +++....+.. -+..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~--~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK--ENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc--cCcchhHHHHHHHHHHH
Confidence 2334689999999999988763 5432 2222244455777777777 3333333221 122333333322
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 045814 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 423 (427)
+.-.++.+.|..++.++.+. ++++...|..++.-+...+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23467889999999999875 5556777777777665554
No 394
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=55.75 E-value=17 Score=27.20 Aligned_cols=48 Identities=15% Similarity=0.104 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
..++..+...+..-.|.++++.|.+.|...+..|..--++.+.+.|-+
T Consensus 11 ~~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 11 LAILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 345566666666777888888888877777777777777777777754
No 395
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=55.68 E-value=1.5e+02 Score=26.26 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=10.9
Q ss_pred HHHHHhhcCCHHHHHHHHH
Q 045814 345 MIHGYCRIDNLEEAKRLHK 363 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~ 363 (427)
++..+.+.|.+..|..+..
T Consensus 131 li~l~y~~~~YsdalalIn 149 (421)
T COG5159 131 LIYLLYKTGKYSDALALIN 149 (421)
T ss_pred HHHHHHhcccHHHHHHHHH
Confidence 4555566666666665443
No 396
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=55.63 E-value=31 Score=34.17 Aligned_cols=27 Identities=19% Similarity=0.090 Sum_probs=19.6
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhcC
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDSTG 133 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 133 (427)
+.-|+ .+..+.-.|.++.|.++++..+
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~s 175 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLHS 175 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TTT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhcc
Confidence 55555 6888889999999999996543
No 397
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.06 E-value=71 Score=22.40 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=5.8
Q ss_pred CCHHHHHHHHHHHH
Q 045814 318 GWLGDARKMWFEMI 331 (427)
Q Consensus 318 g~~~~a~~~~~~m~ 331 (427)
|+.+.|.++++.+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 34444444444443
No 398
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=54.87 E-value=16 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.646 Sum_probs=18.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045814 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243 (427)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 243 (427)
.|.-..|..+|++|++.|-.|| .|+.|+..
T Consensus 108 ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 108 YGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 4455566667777777766665 45555544
No 399
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.25 E-value=2e+02 Score=27.25 Aligned_cols=117 Identities=12% Similarity=-0.026 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHhc---CC-CcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814 155 EEAFCAFSKLKEM---GV-FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL 230 (427)
Q Consensus 155 ~~A~~~~~~m~~~---g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 230 (427)
++...++...... |+ ..+......++..+ .|+...+..+++.+... ...=..+...+++...... .
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~-------~~~It~~~v~~~~~~~~~~-~ 223 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALG-------VDSITLELLEEALQKRAAR-Y 223 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHc-------cCCCCHHHHHHHHhhhhhc-c
Confidence 4445555544321 33 34444444444432 56776666666655421 0001222333333322111 1
Q ss_pred CCCHHHHHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 045814 231 VPENTAFNKLISRFCE---KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 281 (427)
..+...+..+++++.+ ..+.+.|...+..|.+.|..|....-..++.++-.
T Consensus 224 d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ed 277 (413)
T PRK13342 224 DKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASED 277 (413)
T ss_pred CCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 1122233444455444 46788888888888888776654444444444333
No 400
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.60 E-value=1.3e+02 Score=30.04 Aligned_cols=91 Identities=11% Similarity=0.127 Sum_probs=62.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCCHH------HHHHHHHHHHHcCCCCCHHHHHHH
Q 045814 274 EVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVMYTTVIHGLCKMGWLG------DARKMWFEMIHKGLLPNEYTYNSM 345 (427)
Q Consensus 274 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l 345 (427)
.++.+|...|++-.+..+++.+... |-+.=...||..|..+.+.|.++ .|.++++... +.-|..||..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 8999999999999999999998654 32333457888899999999754 3444444443 55588899998
Q ss_pred HHHHhhcCCHHHHHHHHHHHHH
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+++-..--+-.-..-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8876553333334444555444
No 401
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=53.27 E-value=1.1e+02 Score=23.98 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=49.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCC-----CCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCChhhHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNR-----APDNFTYEEVINGLCKSRK-RLEAYRVFNDLKERGYVPDTVMYTT 309 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (427)
..|.++.-....++......+++.+..-.. ..+..+|.+++++..+..- ---+..+|+-|++.+.+++..-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356666666666677766666666532110 2244566677776655444 3345666666666666667777777
Q ss_pred HHHHHHcc
Q 045814 310 VIHGLCKM 317 (427)
Q Consensus 310 li~~~~~~ 317 (427)
+|.++.+.
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766654
No 402
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=52.98 E-value=2.1e+02 Score=27.16 Aligned_cols=62 Identities=18% Similarity=0.208 Sum_probs=46.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (427)
...|+.-|...|++.+|.+.++++--- +-.....+.+++.+.-+.|+-...+.+++..-+.|
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 456788888899999998888776321 22356788888888888888888888877766554
No 403
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=52.72 E-value=1.2e+02 Score=24.80 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCCCCH--HHH-----HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814 320 LGDARKMWFEMIHKGLLPNE--YTY-----NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389 (427)
Q Consensus 320 ~~~a~~~~~~m~~~~~~p~~--~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (427)
++.|+.+|+.+.+.-..|.. ... ...+-.|.+.|.+++|.+++++.... |+......-+....+..+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~Kd 158 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREKD 158 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHccc
Confidence 67899999888876433311 111 23455688899999999999988873 565555666666665554
No 404
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=50.65 E-value=98 Score=22.74 Aligned_cols=26 Identities=19% Similarity=0.359 Sum_probs=16.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhh
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVA 262 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~ 262 (427)
|..|+..|...|..++|.+++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 56666666666666666666665555
No 405
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=50.12 E-value=47 Score=21.79 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 045814 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL 386 (427)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 386 (427)
|....++.++..+++....+.+...+.+..+.|. .+..+|-.-++.+++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666554 244444444444443
No 406
>PHA02875 ankyrin repeat protein; Provisional
Probab=49.85 E-value=2.3e+02 Score=26.66 Aligned_cols=80 Identities=20% Similarity=0.153 Sum_probs=45.5
Q ss_pred HHHHHHcCChHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh--hHHHHHHHHHHcCC
Q 045814 113 FDSLVEARAFKVAMDFLDSTGFSPNPNS--LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK--TWNSALLGCIKIDR 188 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~ 188 (427)
+...++.|+.+.+..+++. |..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+
T Consensus 6 L~~A~~~g~~~iv~~Ll~~-g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 6 LCDAILFGELDIARRLLDI-GINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHhCCHHHHHHHHHC-CCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3445577888887777764 55555432 334455556677765 344455566555432 12234555566777
Q ss_pred hhHHHHHHH
Q 045814 189 TDLVWKLYH 197 (427)
Q Consensus 189 ~~~a~~~~~ 197 (427)
.+.+..+++
T Consensus 81 ~~~v~~Ll~ 89 (413)
T PHA02875 81 VKAVEELLD 89 (413)
T ss_pred HHHHHHHHH
Confidence 766655554
No 407
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=49.80 E-value=2.9e+02 Score=27.83 Aligned_cols=65 Identities=12% Similarity=0.108 Sum_probs=40.5
Q ss_pred hhcCCHHHHHHHHHHHHHCCC-CC-----ChhhHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCCHhHHH
Q 045814 350 CRIDNLEEAKRLHKEMLDKGY-GE-----TTVTYNTLIAG--LCLHGRTDEAYHLFE--------EMAQKGIFRDVITYN 413 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~-~p-----~~~~~~~li~~--~~~~g~~~~A~~~~~--------~m~~~g~~p~~~~~~ 413 (427)
+-.+++..|.+.++.|.+..- .| ....+..++.+ +-..|+.+.|...|. .....+...+..++.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 456889999999998886421 11 12334444443 345699999999997 444555555554443
Q ss_pred H
Q 045814 414 T 414 (427)
Q Consensus 414 ~ 414 (427)
.
T Consensus 452 ~ 452 (608)
T PF10345_consen 452 A 452 (608)
T ss_pred H
Confidence 3
No 408
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=48.58 E-value=2e+02 Score=25.74 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHhcCCHHH
Q 045814 374 TVTYNTLIAGLCLHGRTDE 392 (427)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~ 392 (427)
..+|.-|+.+++..|+.+-
T Consensus 321 lK~yaPLL~af~s~g~sEL 339 (412)
T KOG2297|consen 321 LKQYAPLLAAFCSQGQSEL 339 (412)
T ss_pred HHhhhHHHHHHhcCChHHH
Confidence 3456666666666666553
No 409
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=48.19 E-value=94 Score=21.81 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=37.7
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045814 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 394 (427)
+.++++.+.+.|+- +......+-.+-...|+.+.|.+++..+. .| +..|...+.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg----~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK----EGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC----CcHHHHHHHHHHHcCchhhhh
Confidence 44566666666643 33333333333335577777777777777 42 345667777777666655443
No 410
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=47.77 E-value=1.6e+02 Score=24.21 Aligned_cols=67 Identities=10% Similarity=0.081 Sum_probs=43.8
Q ss_pred ChHHHHHHHHHHHhCCCCCC--hhhH-----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 284 KRLEAYRVFNDLKERGYVPD--TVMY-----TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~--~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
-.+.|+.+|+.+.+.-..|. .... -..+..|.+.|.+++|.+++++.... |+......-+....+.+
T Consensus 84 PLESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d---~~~~~~r~kL~~II~~K 157 (200)
T cd00280 84 PLESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSD---PESQKLRMKLLMIIREK 157 (200)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---CCchhHHHHHHHHHHcc
Confidence 35789999999987644431 1122 23445789999999999999998873 45444444444444433
No 411
>PRK10304 ferritin; Provisional
Probab=47.74 E-value=1.5e+02 Score=23.87 Aligned_cols=96 Identities=9% Similarity=0.078 Sum_probs=45.7
Q ss_pred HhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 045814 173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR 252 (427)
Q Consensus 173 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 252 (427)
...|-++-..|...|-..-|.-++.+..+ ..+.|.++++.+...|..|....... -...+..
T Consensus 21 s~~Yl~ma~~~~~~gl~g~A~~f~~qs~E------------E~~HA~kl~~~i~~rgg~~~~~~i~~------p~~~~~s 82 (165)
T PRK10304 21 SLLYQQMSAWCSYHTFEGAAAFLRRHAQE------------EMTHMQRLFDYLTDTGNLPRINTVES------PFAEYSS 82 (165)
T ss_pred HHHHHHHHHHHhhCCChHHHHHHHHHHHH------------HHHHHHHHHHHHHHcCCCeeeCCCCC------CccccCC
Confidence 34454444445455544444444444333 25567777777777776654322110 0123334
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH
Q 045814 253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287 (427)
Q Consensus 253 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 287 (427)
..++|+...+.-.. -...++.++..+.+.+|+..
T Consensus 83 ~~e~~~~~l~~E~~-vt~~i~~l~~~A~~~~D~~t 116 (165)
T PRK10304 83 LDELFQETYKHEQL-ITQKINELAHAAMTNQDYPT 116 (165)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCHhH
Confidence 44455444433111 23455666666666655543
No 412
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.90 E-value=1.2e+02 Score=26.26 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=37.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHC----CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 343 NSMIHGYCRIDNLEEAKRLHKEMLDK----GY-GETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
-.+..-|...|++++|.++|+.+... |. .+...+...+..++...|+.++.+.+.-+|.
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 34556677778888888887776422 22 2334556666677777777777766655543
No 413
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=46.37 E-value=43 Score=17.34 Aligned_cols=14 Identities=21% Similarity=0.596 Sum_probs=6.4
Q ss_pred CHHHHHHHHHHHHH
Q 045814 354 NLEEAKRLHKEMLD 367 (427)
Q Consensus 354 ~~~~a~~~~~~m~~ 367 (427)
+.+.|..+|+++..
T Consensus 2 ~~~~~r~i~e~~l~ 15 (33)
T smart00386 2 DIERARKIYERALE 15 (33)
T ss_pred cHHHHHHHHHHHHH
Confidence 34444444444443
No 414
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=46.14 E-value=1.5e+02 Score=29.11 Aligned_cols=57 Identities=11% Similarity=-0.056 Sum_probs=27.6
Q ss_pred HHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045814 112 LFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168 (427)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 168 (427)
+...+-+.|...+|--++.. .+..|. ..-+-.+.++++..+.+......|+...+.|
T Consensus 255 laTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~ 313 (886)
T KOG4507|consen 255 LATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQAR 313 (886)
T ss_pred HHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhhhhhhhhhhhhhhccC
Confidence 34444555555555444432 111111 1114455566666666666666666555543
No 415
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.80 E-value=2.9e+02 Score=26.72 Aligned_cols=99 Identities=7% Similarity=0.131 Sum_probs=70.5
Q ss_pred CCHHH-HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHh-CCCCCChhhH
Q 045814 232 PENTA-FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK--SRKRLEAYRVFNDLKE-RGYVPDTVMY 307 (427)
Q Consensus 232 ~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~-~~~~p~~~~~ 307 (427)
|+..+ -+.++..+.+.|-..+|..++..+... ++|+...|.-+|..-.. .-+...+...|+.|.. .| .|+..|
T Consensus 457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw 533 (568)
T KOG2396|consen 457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLW 533 (568)
T ss_pred CceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHH
Confidence 34443 356777788888899999999988776 46677777777754321 2237778888888854 46 477778
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.-.+.--...|..+.+-.++.++.+.
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~kt 559 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMKT 559 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHHh
Confidence 77777777888888888887776654
No 416
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.72 E-value=1.7e+02 Score=24.16 Aligned_cols=55 Identities=13% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--------------CCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 274 EVINGLCKSRKRLEAYRVFNDLKERGY--------------VPDTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
+++-.|.+.-++.+..++++.|.+..+ .+--...|.....|.+.|.+|.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 456677777788888888888765422 2233345566666666666666666665
No 417
>PRK13342 recombination factor protein RarA; Reviewed
Probab=44.95 E-value=2.8e+02 Score=26.27 Aligned_cols=157 Identities=18% Similarity=0.103 Sum_probs=76.0
Q ss_pred hHHHHHHHHHHH---CCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814 216 SEGYELLRQVLE---DGL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 216 ~~a~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
++...+++.... .|. ..+......++..+ .|+...+..+++.....+... ..+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHH
Confidence 344444444332 133 34555555554432 688888888887765431111 11222222
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-----HHHHHHHHH
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGLCK---MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-----LEEAKRLHK 363 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~ 363 (427)
+...... ...+...+..+++++.+ .++.+.|+..+..|.+.|..|....-..++.++-..|. ..-|...++
T Consensus 216 ~~~~~~~-~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~ 294 (413)
T PRK13342 216 LQKRAAR-YDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAAD 294 (413)
T ss_pred Hhhhhhc-cCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence 2221111 01111223334444444 47788888888888888877765554445555555542 333444455
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCLHGRTD 391 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~ 391 (427)
-....|++--.......+-.++.+-+..
T Consensus 295 ~~~~~g~pe~~~~l~~~~~~l~~~pksn 322 (413)
T PRK13342 295 AVERIGMPEGRIALAQAVIYLALAPKSN 322 (413)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHcCCCcc
Confidence 5555565433333333333344443433
No 418
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=44.13 E-value=2.3e+02 Score=25.04 Aligned_cols=156 Identities=12% Similarity=0.053 Sum_probs=87.6
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-----
Q 045814 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG----- 318 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----- 318 (427)
.+..+|.+++..+.+.|.. .....|...|.. ..+..+|...|++.-+.|..+...+...+...|..-.
T Consensus 91 ~~~~~A~~~~~~~a~~g~~---~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYRCAAADGLA---EALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred ccHHHHHHHHHHHhhcccH---HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3456677777765555532 222223333333 3367777777777777765432222333444443321
Q ss_pred --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC----
Q 045814 319 --WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG---- 388 (427)
Q Consensus 319 --~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---- 388 (427)
+...|...+.++...+ +......+...|.. ..+..+|...|+...+.|. ......+- .+...|
T Consensus 168 ~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~ 240 (292)
T COG0790 168 AYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVK 240 (292)
T ss_pred cHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCch
Confidence 2336777787777776 33333334333322 3377888888888887764 22222222 333333
Q ss_pred -----------CHHHHHHHHHHHHHCCCCCCHhHHH
Q 045814 389 -----------RTDEAYHLFEEMAQKGIFRDVITYN 413 (427)
Q Consensus 389 -----------~~~~A~~~~~~m~~~g~~p~~~~~~ 413 (427)
+...|...+......|.........
T Consensus 241 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 276 (292)
T COG0790 241 KAAFLTAAKEEDKKQALEWLQKACELGFDNACEALR 276 (292)
T ss_pred hhhhcccccCCCHHHHHHHHHHHHHcCChhHHHHHH
Confidence 7778888888888887776666666
No 419
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=44.12 E-value=1.4e+02 Score=22.63 Aligned_cols=45 Identities=11% Similarity=-0.111 Sum_probs=34.9
Q ss_pred hhHHHHHHHHHHhcCCCc-CHhhHHHHHHHHHHcCChhHHHHHHHH
Q 045814 154 IEEAFCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHD 198 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~ 198 (427)
...+.++|..|...|+-- -+..|......+...|++++|.++|+.
T Consensus 79 ~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 79 SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 348999999999877653 456778888888888999888888865
No 420
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=44.04 E-value=88 Score=20.25 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=27.1
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-----HhcCCHHHHHHHH
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL-----CLHGRTDEAYHLF 397 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-----~~~g~~~~A~~~~ 397 (427)
...|++-+|-++++++-.....+....|..+|... .+.|+.+.|.+++
T Consensus 10 ~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 10 FNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 35677777777777776443333455566665543 3456666666553
No 421
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=43.77 E-value=1.3e+02 Score=22.12 Aligned_cols=27 Identities=15% Similarity=0.288 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKE 297 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 297 (427)
-|..++..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 477888888888888888888888766
No 422
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=43.50 E-value=1.9e+02 Score=23.96 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=45.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCC--------------CCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814 343 NSMIHGYCRIDNLEEAKRLHKEMLDKG--------------YGETTVTYNTLIAGLCLHGRTDEAYHLFEE 399 (427)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~m~~~~--------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (427)
-+++-.|-+..++.+++++++.|.+.. ..+-....|.....+.++|..|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 456677888889999999999887642 233456788889999999999999999983
No 423
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=43.42 E-value=2.7e+02 Score=25.76 Aligned_cols=156 Identities=12% Similarity=0.139 Sum_probs=85.1
Q ss_pred HHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH---HHcC-----
Q 045814 116 LVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC---IKID----- 187 (427)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~----- 187 (427)
+...++++....++++.+ -.+.++-.+-..+.+.|+.+.|.+++++..-. =..++...+..+ ...|
T Consensus 20 ~v~~~Dp~~l~~ll~~~P--yHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~rL~ 93 (360)
T PF04910_consen 20 AVQSHDPNALINLLQKNP--YHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNCRLD 93 (360)
T ss_pred HHHccCHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCccccC
Confidence 344556666666665442 24556666667777777777777777666421 001111111100 0001
Q ss_pred -ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHhhC--
Q 045814 188 -RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-EKKNFGRVSELLHTMVAR-- 263 (427)
Q Consensus 188 -~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~-- 263 (427)
...+=..+|..+.. .+..+.+.|-+..|+++.+-+......-|+.....+|+.|+ ++++++-.+++.+.....
T Consensus 94 ~~~~eNR~fflal~r---~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 94 YRRPENRQFFLALFR---YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred CccccchHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 01111122222211 45667788888888888888888776667777777777765 466677677777765442
Q ss_pred -C---CCCCHhhHHHHHHHHHh
Q 045814 264 -N---RAPDNFTYEEVINGLCK 281 (427)
Q Consensus 264 -~---~~~~~~~~~~ll~~~~~ 281 (427)
. .-| ...|+..+..+..
T Consensus 171 ~~~~~~lP-n~a~S~aLA~~~l 191 (360)
T PF04910_consen 171 RNWLSLLP-NFAFSIALAYFRL 191 (360)
T ss_pred hhhhhhCc-cHHHHHHHHHHHh
Confidence 0 122 3456655555443
No 424
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=43.32 E-value=2.8e+02 Score=25.95 Aligned_cols=58 Identities=12% Similarity=0.061 Sum_probs=28.0
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDG--LVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 262 (427)
+...|...|+++.|++.+.+..+.- .+..+..|-.+|..-.-.|+|..+.....+..+
T Consensus 156 l~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 156 LGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 5555666666666666665543321 111222333444444445555555555555443
No 425
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=43.23 E-value=3e+02 Score=26.19 Aligned_cols=92 Identities=5% Similarity=0.084 Sum_probs=61.9
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (427)
...|+.-|...|+..+|.+.++++--- +-....++.+++.+.-+.|+-...+.+++..-+.| ..|-+.|-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 456778888888888888888765322 12235678888888888888887777777777664 4466777777776
Q ss_pred cCC--------HHHHHHHHHHHHHc
Q 045814 317 MGW--------LGDARKMWFEMIHK 333 (427)
Q Consensus 317 ~g~--------~~~a~~~~~~m~~~ 333 (427)
..+ +..|.+.|+...+.
T Consensus 587 V~dsl~DlsLDvPna~ekf~~~Ve~ 611 (645)
T KOG0403|consen 587 VYDSLPDLSLDVPNAYEKFERYVEE 611 (645)
T ss_pred hhccCcccccCCCcHHHHHHHHHHH
Confidence 532 34455555554444
No 426
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=43.02 E-value=1.6e+02 Score=26.24 Aligned_cols=22 Identities=23% Similarity=0.064 Sum_probs=12.3
Q ss_pred CCHhhHHHHHHHHHhcCChHHH
Q 045814 267 PDNFTYEEVINGLCKSRKRLEA 288 (427)
Q Consensus 267 ~~~~~~~~ll~~~~~~~~~~~a 288 (427)
.|...|..++.+|.-.|+...+
T Consensus 195 Fd~~~Y~~v~~AY~lLgk~~~~ 216 (291)
T PF10475_consen 195 FDPDKYSKVQEAYQLLGKTQSA 216 (291)
T ss_pred CCHHHHHHHHHHHHHHhhhHHH
Confidence 3555566666666655554443
No 427
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=42.78 E-value=2.9e+02 Score=25.84 Aligned_cols=55 Identities=11% Similarity=-0.015 Sum_probs=34.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCcCHh--hHHHHHHHHH--HcCChhHHHHHHHHHH
Q 045814 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIK--TWNSALLGCI--KIDRTDLVWKLYHDLI 200 (427)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~ 200 (427)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ...++++|.+.++...
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455889999999999999987 555554 3344444443 3444555555555444
No 428
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=42.67 E-value=2.2e+02 Score=24.47 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHC---CCCCChhhHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 045814 355 LEEAKRLHKEMLDK---GYGETTVTYNTLIA-----GLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 355 ~~~a~~~~~~m~~~---~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~ 402 (427)
.+.|.+.|+...+. .++|...++-.|+- .|--.|+.++|.++-++..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 34555555554321 24555444433332 33457888888877666544
No 429
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=42.64 E-value=1.5e+02 Score=26.48 Aligned_cols=72 Identities=13% Similarity=0.234 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----------cCCHHHH
Q 045814 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----------IDNLEEA 358 (427)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----------~g~~~~a 358 (427)
.++|+.|.+.++.|.-.++.-+.-.+.+.=.+...+.+|+.+... ..-|..++..||. .|++.-.
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 456666666677776666666666666666667777777766553 2225555555543 3666666
Q ss_pred HHHHHHH
Q 045814 359 KRLHKEM 365 (427)
Q Consensus 359 ~~~~~~m 365 (427)
.++++.-
T Consensus 338 mkLLQ~y 344 (370)
T KOG4567|consen 338 MKLLQNY 344 (370)
T ss_pred HHHHhcC
Confidence 6666543
No 430
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=42.21 E-value=2.4e+02 Score=24.84 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=49.0
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHH----cCChHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCCh
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE----SGLI 154 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 154 (427)
..+...+...+...... -+......+...+.. ..+...|.++++...-.-.......|...|.. ..+.
T Consensus 54 ~~~~~~a~~~~~~a~~~----~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~ 129 (292)
T COG0790 54 PPDYAKALKSYEKAAEL----GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDL 129 (292)
T ss_pred cccHHHHHHHHHHhhhc----CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCH
Confidence 44556666666666431 112333334444432 34577788888765444445555556555554 3477
Q ss_pred hHHHHHHHHHHhcCCCc
Q 045814 155 EEAFCAFSKLKEMGVFG 171 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p 171 (427)
.+|...|.+..+.|..+
T Consensus 130 ~~A~~~~~~Aa~~g~~~ 146 (292)
T COG0790 130 VKALKYYEKAAKLGNVE 146 (292)
T ss_pred HHHHHHHHHHHHcCChh
Confidence 78888888888777664
No 431
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=42.20 E-value=2.8e+02 Score=25.59 Aligned_cols=222 Identities=11% Similarity=-0.001 Sum_probs=102.2
Q ss_pred hcCChHHHHHHHHHHhhcCC-CCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCC----C---CCHHhHHHHHHHHHhcC
Q 045814 82 QQNNVLLSIRFFQWLHSHYG-FSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGF----S---PNPNSLELYIQCLCESG 152 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~----~---~~~~~~~~li~~~~~~~ 152 (427)
..++..+|++.+.....+.. ..--..+|..+..+.++.|.+++++..--. +.. . .--.+|-.+-+++-+..
T Consensus 18 ~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 18 QSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666665544321 111234566667777777777776554211 110 0 01223444444444444
Q ss_pred ChhHHHHHHHHHHhc-CCCcC---HhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC
Q 045814 153 LIEEAFCAFSKLKEM-GVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED 228 (427)
Q Consensus 153 ~~~~A~~~~~~m~~~-g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 228 (427)
++.+++.+-..-... |..|. -...-++..++. ..+.++++++.|+...+.
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl--------------------------gls~fq~~Lesfe~A~~~ 151 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL--------------------------GLSVFQKALESFEKALRY 151 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh--------------------------hHHHHHHHHHHHHHHHHH
Confidence 444444443332221 11110 011222333333 344444444444443321
Q ss_pred -----CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh----CCCCCCH-hhHH-----HHHHHHHhcCChHHHHHHHH
Q 045814 229 -----GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA----RNRAPDN-FTYE-----EVINGLCKSRKRLEAYRVFN 293 (427)
Q Consensus 229 -----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~ 293 (427)
.......+|..|-+.|.+..|+++|.-+.....+ .++. |. .-|. .+.-++...|....|.+.-+
T Consensus 152 A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~ 230 (518)
T KOG1941|consen 152 AHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCE 230 (518)
T ss_pred hhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 1112334666777777777777766655543332 1211 11 1122 22334556666666666665
Q ss_pred HHH----hCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814 294 DLK----ERGYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 294 ~m~----~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 330 (427)
+.. +.|-.+. ......+.+.|-..|+.+.|+.-|++.
T Consensus 231 Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 231 EAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 543 2332221 223345556666777777777666654
No 432
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=42.06 E-value=69 Score=23.62 Aligned_cols=43 Identities=19% Similarity=0.217 Sum_probs=20.4
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319 (427)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (427)
+.+...+..-.|.++++.+.+.+...+..|....+..+.+.|-
T Consensus 8 ~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 8 EVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 3333334444455555555555444444444444444544443
No 433
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=41.83 E-value=1.4e+02 Score=21.85 Aligned_cols=21 Identities=19% Similarity=0.203 Sum_probs=9.3
Q ss_pred HHHHHHhcCChHHHHHHHHHH
Q 045814 275 VINGLCKSRKRLEAYRVFNDL 295 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m 295 (427)
++..|...|+.++|..-+.++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 334444445555554444443
No 434
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=41.58 E-value=2.2e+02 Score=29.39 Aligned_cols=31 Identities=10% Similarity=0.237 Sum_probs=20.6
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHhcCC
Q 045814 104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGF 134 (427)
Q Consensus 104 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 134 (427)
+.......+++.+...|+++.|.+++...+.
T Consensus 430 ~~~~~~~~~l~~LL~~~~f~la~~~~~~~~~ 460 (715)
T PF08314_consen 430 SKDEIEEIFLEALLSSGRFSLAKSLYEESSS 460 (715)
T ss_dssp -HHHHHHHHHHHHHHTT-HHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHCCCHHHHHHHHhcCCc
Confidence 4455667777777888888888888877544
No 435
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=41.36 E-value=2.6e+02 Score=24.92 Aligned_cols=113 Identities=12% Similarity=0.084 Sum_probs=65.7
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 045814 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318 (427)
Q Consensus 239 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (427)
.++....+.++..+..+.+..+. ....-...++.+...|++..|.++..+..+.- . +...|+.+=..- .
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l-~-~l~~~~c~~~L~---~ 171 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK------TVQQTQSRLQELLEEGDYPGALDLIEECQQLL-E-ELKGYSCVRHLS---S 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-H-hcccchHHHHHh---H
Confidence 34555555666666666666552 45566677788889999999999988876531 0 111121111111 1
Q ss_pred CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814 319 WLGDARKMWFEMIHK-----GLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362 (427)
Q Consensus 319 ~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 362 (427)
++++.....+++.+. -...|+..|..++.+|.-.|+...+.+-+
T Consensus 172 ~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 172 QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 233333333333322 11468888999999999999776655433
No 436
>PRK11619 lytic murein transglycosylase; Provisional
Probab=41.32 E-value=4e+02 Score=27.08 Aligned_cols=250 Identities=8% Similarity=-0.075 Sum_probs=126.8
Q ss_pred hcCChHHHHHHHHHHhhcCCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814 82 QQNNVLLSIRFFQWLHSHYGFSPDL--VSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 82 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~ 158 (427)
...+++.|...+.......++.+.. ..+..+...+...+...+|...++.. ....+......-+..-...++++.+.
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~ 332 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLN 332 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHH
Confidence 3567788888888775554444432 23444444444443356677777763 22335555566666666888999888
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh--HHHHHhcCChhHH-HHHHHHHHHCCCCCCHH
Q 045814 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL--IQAFCNDGKVSEG-YELLRQVLEDGLVPENT 235 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l--~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~ 235 (427)
..+..|....-. ...-.--+.+++...|+.++|...|+.+...... .-+..+.|..-.. ...... ....+. ..
T Consensus 333 ~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~-~~~~~~-~~- 408 (644)
T PRK11619 333 TWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPK-PDSALT-QG- 408 (644)
T ss_pred HHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCc-hhhhhc-cC-
Confidence 888888653322 3344445677777789999999999887554211 0001111211000 000000 000000 00
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--PDTVMYTTVIHG 313 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~ 313 (427)
.-..-+..+...|....|...+..+... . +......+.....+.|.++.+..........+.. --+..|...+..
T Consensus 409 ~~~~ra~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~ 485 (644)
T PRK11619 409 PEMARVRELMYWNMDNTARSEWANLVAS-R--SKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRR 485 (644)
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHH
Confidence 1112234556677777777777776654 2 3334445555555667666666554432211000 001135555555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCC
Q 045814 314 LCKMGWLGDARKMWFEMIHKGLLPN 338 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~~~~p~ 338 (427)
+.+...++.++-+---..+++..|+
T Consensus 486 ~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 486 YTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 5554445544433222334444443
No 437
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=41.27 E-value=75 Score=20.83 Aligned_cols=48 Identities=6% Similarity=0.043 Sum_probs=24.5
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
|+...++.++..+++..-.++++..+.++...|. .+..+|.--++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 3444555566666655556666666666665553 23444444444433
No 438
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=40.81 E-value=1.5e+02 Score=25.61 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=32.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 309 TVIHGLCKMGWLGDARKMWFEMIHK----G-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
.+..-|.+.|++++|.++|+.+... | ..+...+...+..++...|+.+....+.=++
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3455566677777777777766322 1 2233344555666666677766666554443
No 439
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=40.12 E-value=1.5e+02 Score=21.69 Aligned_cols=61 Identities=8% Similarity=0.032 Sum_probs=33.2
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHCCC
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID--NLEEAKRLHKEMLDKGY 370 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~ 370 (427)
..++..|...|+.++|..-+.++.... -.......++..+...+ .-+....++..+.+.+.
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~~~--~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~ 68 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKLPS--QHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKL 68 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT-GG--GHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCc--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCC
Confidence 446667778899999998887763321 12223344444444332 23445556666666543
No 440
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=39.67 E-value=2.9e+02 Score=25.03 Aligned_cols=118 Identities=11% Similarity=0.069 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCCHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR---IDNLEEAKRLH 362 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~ 362 (427)
+.-+.++++..+.+. -+......++..+.+..+.++..+.++++...... +...|...|..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 344556666655533 24555566666666666677777777777665321 45555555554433 12355555555
Q ss_pred HHHHHC------CC----CCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045814 363 KEMLDK------GY----GETT-------VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405 (427)
Q Consensus 363 ~~m~~~------~~----~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 405 (427)
.+.... +. .+-. ..+..+...+..+|..+.|..+++.+.+.++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 443321 11 0111 2233333344578888999999988888755
No 441
>PRK09462 fur ferric uptake regulator; Provisional
Probab=39.15 E-value=1.9e+02 Score=22.62 Aligned_cols=63 Identities=16% Similarity=0.029 Sum_probs=39.9
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh
Q 045814 126 MDFLDSTGFSPNPNSLELYIQCLCES-GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189 (427)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 189 (427)
.+.+++.|.+.+..= ..++..+... +..-.|.++++.+.+.+...+..|.-..+..+.+.|-+
T Consensus 5 ~~~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 445555666554432 2334444443 46788999999999888777776666666666666643
No 442
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=38.76 E-value=2.4e+02 Score=27.87 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=67.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045814 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH 395 (427)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 395 (427)
-.|+...|.+.+.........-..+....|.....+.|....|-.++.+..... ...+.++-.+..+|....++++|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHH
Confidence 357777888777766544322223344455555666677778888887776654 3356777788899999999999999
Q ss_pred HHHHHHHCCCCCCHhHHHHHHHH
Q 045814 396 LFEEMAQKGIFRDVITYNTLIQG 418 (427)
Q Consensus 396 ~~~~m~~~g~~p~~~~~~~li~~ 418 (427)
-|++..+.... +.+.-+.|...
T Consensus 698 ~~~~a~~~~~~-~~~~~~~l~~i 719 (886)
T KOG4507|consen 698 AFRQALKLTTK-CPECENSLKLI 719 (886)
T ss_pred HHHHHHhcCCC-ChhhHHHHHHH
Confidence 99998876433 33444444433
No 443
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=38.24 E-value=2.9e+02 Score=24.56 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=57.6
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHccCChhHHHHHHHHHhh----CCCCCCHhhHHHHHH
Q 045814 209 FCNDGKVSEGYELLRQVLEDGLVPENT-------AFNKLISRFCEKKNFGRVSELLHTMVA----RNRAPDNFTYEEVIN 277 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~ll~ 277 (427)
..+.+++++|+..+.++...|...|.. +...+...|...|++...-+......+ -.-........+++.
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 344555666666666666555544333 233455556666665444333322211 110111223333343
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCCCCCh-----hhHHHHHHHHHccCCHHHHHHHHHHH----HHcCCCCCHHH
Q 045814 278 GLCKS-RKRLEAYRVFNDLKERGYVPDT-----VMYTTVIHGLCKMGWLGDARKMWFEM----IHKGLLPNEYT 341 (427)
Q Consensus 278 ~~~~~-~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m----~~~~~~p~~~~ 341 (427)
.+-.. ..++....+.....+-..+-.. ..=.-+|..+.+.|.+.+|+.+.+.+ .+.+-+|+..+
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 33222 2333334443333221111010 11133566677777777777665443 33344444433
No 444
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.06 E-value=53 Score=18.01 Aligned_cols=25 Identities=16% Similarity=0.317 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814 389 RTDEAYHLFEEMAQKGIFRDVITYNTL 415 (427)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~~~~~l 415 (427)
.++.|..+|++... +.|+..+|-..
T Consensus 2 E~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHH--hCCCchHHHHH
Confidence 46778888888776 35777766543
No 445
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.83 E-value=2.6e+02 Score=23.86 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=0.0
Q ss_pred CCCCCCChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHH
Q 045814 66 PSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYI 145 (427)
Q Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li 145 (427)
++....-+.-+...+-.++++..|++++++.. ..-.+......++.. ..++.+.+|+.+-+...-.-....+..++
T Consensus 104 ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~ 179 (226)
T PF13934_consen 104 PSLIPWFPDKILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA-LANGLVTEAFSFQRSYPDELRRRLFEQLL 179 (226)
T ss_pred CCCCcccHHHHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH-HHcCCHHHHHHHHHhCchhhhHHHHHHHH
Q ss_pred HHHH----hcCChhHHHHH
Q 045814 146 QCLC----ESGLIEEAFCA 160 (427)
Q Consensus 146 ~~~~----~~~~~~~A~~~ 160 (427)
..+. +.+..++-..+
T Consensus 180 ~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 180 EHCLEECARSGRLDELLSL 198 (226)
T ss_pred HHHHHHhhhhhHHHHHHhC
No 446
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.62 E-value=1.5e+02 Score=20.97 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=14.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.......|++++|...+++..+
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3445566777777777777654
No 447
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=37.44 E-value=5.3e+02 Score=27.37 Aligned_cols=68 Identities=10% Similarity=-0.018 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHhcC
Q 045814 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-KGIFRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 356 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g 423 (427)
+.-.+.|.++.+---..|..++..-...+...|++..|++++.++.+ .|-.++...|..+++.+...|
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 34444555544321123556666666666777888888888777765 355666666666666665544
No 448
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=37.41 E-value=4.9e+02 Score=26.94 Aligned_cols=127 Identities=11% Similarity=-0.042 Sum_probs=65.7
Q ss_pred CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCC----hhHHHHHHHHHH---HCCCCCCHHHHHHH
Q 045814 168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK----VSEGYELLRQVL---EDGLVPENTAFNKL 240 (427)
Q Consensus 168 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~----~~~a~~~~~~~~---~~~~~~~~~~~~~l 240 (427)
++..+..+...+.... .|+..+++.+++.+..... -...+. .+.+.+.+.... +..-.+...+.+.+
T Consensus 192 ~v~I~deaL~~La~~s--~GD~R~lln~Le~a~~~~~----~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~ 265 (725)
T PRK13341 192 KVDLEPEAEKHLVDVA--NGDARSLLNALELAVESTP----PDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAF 265 (725)
T ss_pred ccCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcc----cCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHH
Confidence 3455566666666543 7888888888776542100 000111 122333332211 11111233344444
Q ss_pred HHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--h---HHHHHHHHHHHhCCCC
Q 045814 241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK--R---LEAYRVFNDLKERGYV 301 (427)
Q Consensus 241 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~---~~a~~~~~~m~~~~~~ 301 (427)
+.. .+.+|.+.|...+.+|.+.|..|....-..++.+.-..|. + .-|...+......|.+
T Consensus 266 ~ks-irgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~~~~~~~a~~~~g~p 330 (725)
T PRK13341 266 IKS-LRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVVVEACAAAFERVGLP 330 (725)
T ss_pred HHH-HhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhCCc
Confidence 443 4468899999999999999988765555555544434443 2 2244444445555653
No 449
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=37.36 E-value=1.2e+02 Score=25.46 Aligned_cols=62 Identities=15% Similarity=0.269 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhcC---------CHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 340 YTYNSMIHGYCRID---------NLEEAKRLHKEMLDKGYGE-TTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 340 ~~~~~li~~~~~~g---------~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
.-|..+..+|++.| +.+.-.++++..++.|++- =++.|+++|+--...-+.++..+++..++
T Consensus 164 eE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 164 EEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 34555666666654 4556666777777766542 24667777776555556777777776654
No 450
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=36.94 E-value=3.1e+02 Score=24.87 Aligned_cols=119 Identities=9% Similarity=0.093 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 364 (427)
..+|+++|+...+. -..+|+ +..+...--...+-+.+.+...-.+.=..+..+-.+.|+..+|.+++++
T Consensus 232 i~~AE~l~k~ALka----~e~~yr-------~sqq~qh~~~~~da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RD 300 (556)
T KOG3807|consen 232 IVDAERLFKQALKA----GETIYR-------QSQQCQHQSPQHEAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRD 300 (556)
T ss_pred HHHHHHHHHHHHHH----HHHHHh-------hHHHHhhhccchhhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHH
Q ss_pred HHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 045814 365 MLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT 414 (427)
Q Consensus 365 m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 414 (427)
+.+. .+..-..+-..||.++....-+.+...++-+.-+...+-+......
T Consensus 301 L~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYT 351 (556)
T KOG3807|consen 301 LMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYT 351 (556)
T ss_pred HhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHH
No 451
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=36.60 E-value=3.4e+02 Score=24.87 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDT----VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 348 (427)
+++..+++.+.+. .|++ .-|-.++......|.++.++.+|++++..|..|-...-..++..
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~di 184 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDI 184 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 3445555544443 2332 24555555555666666666666666666666555444444443
No 452
>PRK09857 putative transposase; Provisional
Probab=36.55 E-value=3.1e+02 Score=24.48 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=15.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGET 373 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 373 (427)
+..-+.+.|.-+++.++...|...|+.++
T Consensus 246 iAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 246 IAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 33334444444455666666666665433
No 453
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=36.24 E-value=2.5e+02 Score=23.26 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=13.9
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 045814 385 CLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~ 402 (427)
.+.|+++.|.+.++-|.+
T Consensus 132 l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 132 LRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHhccHHHHHHHHHHHHH
Confidence 356888888888888765
No 454
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=36.14 E-value=71 Score=23.81 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=17.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (427)
++.+...+.+-.|.++++.+.+.+...+..|.-.-+..+.+.|
T Consensus 14 l~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 14 LELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3333343444444555555544444444443333334444333
No 455
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=36.12 E-value=1.7e+02 Score=21.30 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=57.8
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHH
Q 045814 84 NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK 163 (427)
Q Consensus 84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 163 (427)
...+.|.-+-+|+...... ...+--.-+..+...|++++|..+.+... .||...|-.|-.. +.|..+.+..-+.+
T Consensus 19 HcHqEA~tIAdwL~~~~~~--~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~-~pdlepw~ALce~--rlGl~s~l~~rl~r 93 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES--EEAVQLIRLSSLMNRGDYQSALQLGNKLC-YPDLEPWLALCEW--RLGLGSALESRLNR 93 (115)
T ss_pred hHHHHHHHHHHHHhcCCch--HHHHHHHHHHHHHccchHHHHHHhcCCCC-CchHHHHHHHHHH--hhccHHHHHHHHHH
Confidence 3456788888888543111 22222223556778999999999988874 8898888776554 67777777777777
Q ss_pred HHhcCCCcCHhhH
Q 045814 164 LKEMGVFGSIKTW 176 (427)
Q Consensus 164 m~~~g~~p~~~~~ 176 (427)
|...|-+ ....|
T Consensus 94 la~sg~p-~lq~F 105 (115)
T TIGR02508 94 LAASGDP-RLQTF 105 (115)
T ss_pred HHhCCCH-HHHHH
Confidence 8776533 44444
No 456
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=35.95 E-value=1.5e+02 Score=20.72 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=23.6
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
++|+-....|+..|+..|..+++.+.-.=-.+...++++.|..
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~s 71 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMCS 71 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHHc
Confidence 4555555555555555565555555544455555555555543
No 457
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=35.73 E-value=1.1e+02 Score=19.04 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=13.1
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHC
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.-++.+.|++++|.+..+.+.+.
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhh
Confidence 33455666666666666666653
No 458
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.67 E-value=4.2e+02 Score=25.71 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373 (427)
Q Consensus 338 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 373 (427)
+...+..++.+....+....|..++.++.+.|..|.
T Consensus 247 ~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~ 282 (484)
T PRK14956 247 GIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIY 282 (484)
T ss_pred CHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHH
Confidence 444455555555444445567777777777665543
No 459
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=35.60 E-value=1.7e+02 Score=27.37 Aligned_cols=18 Identities=6% Similarity=0.222 Sum_probs=11.3
Q ss_pred CCCHhHHHHHHHHHHhcC
Q 045814 406 FRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 406 ~p~~~~~~~li~~~~~~g 423 (427)
.||...|.++...|+--|
T Consensus 234 aPnVlIwsAv~aS~a~p~ 251 (391)
T cd07229 234 APNVLIWSAALASNASSA 251 (391)
T ss_pred CCCchHHHHHHHHcCCcc
Confidence 467777777666665443
No 460
>PHA02798 ankyrin-like protein; Provisional
Probab=35.01 E-value=4.3e+02 Score=25.61 Aligned_cols=49 Identities=18% Similarity=0.180 Sum_probs=22.2
Q ss_pred HHHHHHHHHhCCCCCChh---hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 045814 288 AYRVFNDLKERGYVPDTV---MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338 (427)
Q Consensus 288 a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 338 (427)
..++.+.+.+.|..++.. -.+.+. ..+..+.. .-.++.+.+.+.|..++
T Consensus 88 ~~~iv~~Ll~~GadiN~~d~~G~TpLh-~a~~~~~~-~~~~iv~~Ll~~Gadvn 139 (489)
T PHA02798 88 MLDIVKILIENGADINKKNSDGETPLY-CLLSNGYI-NNLEILLFMIENGADTT 139 (489)
T ss_pred HHHHHHHHHHCCCCCCCCCCCcCcHHH-HHHHcCCc-ChHHHHHHHHHcCCCcc
Confidence 356666666676655432 222232 22333321 12344445555665544
No 461
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=35.00 E-value=3.9e+02 Score=25.12 Aligned_cols=55 Identities=9% Similarity=0.004 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhcch-----------hHHHHHhcCChhHHHHHHHHHHHC
Q 045814 174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----------LIQAFCNDGKVSEGYELLRQVLED 228 (427)
Q Consensus 174 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------l~~~~~~~g~~~~a~~~~~~~~~~ 228 (427)
..+.-+...|...|+++.|.+.|.+....-. ++..-.-.|+|.....+..+....
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4577788899999999999999998665411 344444567777777766666543
No 462
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=34.98 E-value=1.6e+02 Score=20.73 Aligned_cols=18 Identities=0% Similarity=-0.073 Sum_probs=8.5
Q ss_pred HHHHcCChhHHHHHHHHH
Q 045814 182 GCIKIDRTDLVWKLYHDL 199 (427)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~ 199 (427)
.....|+.++|...+++.
T Consensus 50 ~~~~~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 50 LHRRFGHYEEALQALEEA 67 (94)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 344445555555544443
No 463
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=34.67 E-value=3.9e+02 Score=24.99 Aligned_cols=56 Identities=16% Similarity=0.336 Sum_probs=36.1
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCCHh--hHHHHHHHHH--hcCChHHHHHHHHHHHhC
Q 045814 242 SRFCEKKNFGRVSELLHTMVARNRAPDNF--TYEEVINGLC--KSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~--~~~~~~~a~~~~~~m~~~ 298 (427)
..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445778888888888888876 444433 3444445554 355677788877776654
No 464
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=34.39 E-value=3e+02 Score=23.71 Aligned_cols=46 Identities=13% Similarity=0.269 Sum_probs=29.1
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
|.+...-.++..|. .+++++|.+++.++-+.|..|.. ..+.+.+.+
T Consensus 237 PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D-ii~~~FRv~ 282 (333)
T KOG0991|consen 237 PHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED-IITTLFRVV 282 (333)
T ss_pred CChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH-HHHHHHHHH
Confidence 56666666666654 46678888888887777777654 334444443
No 465
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=34.09 E-value=63 Score=21.82 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=22.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (427)
-.|+.+.+.+++++..+.|..|.......+.-+....|+
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 345666677777777666666555555555555554444
No 466
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=33.66 E-value=1.7e+02 Score=21.67 Aligned_cols=44 Identities=11% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcC
Q 045814 75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR 120 (427)
Q Consensus 75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 120 (427)
.+...+.+|...+.|+++++|+.++ -..+...-+.|-..+.+.|
T Consensus 66 tViD~lrRC~T~EEALEVInylek~--GEIt~e~A~eLr~~L~~kG 109 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKR--GEITPEEAKELRSILVKKG 109 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhh
No 467
>PHA02989 ankyrin repeat protein; Provisional
Probab=32.92 E-value=4.1e+02 Score=25.77 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=8.8
Q ss_pred HHHHHHHHHhCCCCCC
Q 045814 288 AYRVFNDLKERGYVPD 303 (427)
Q Consensus 288 a~~~~~~m~~~~~~p~ 303 (427)
..++.+.+.+.|..++
T Consensus 87 ~~~iv~~Ll~~Gadin 102 (494)
T PHA02989 87 IKKIVKLLLKFGADIN 102 (494)
T ss_pred HHHHHHHHHHCCCCCC
Confidence 3455566666665544
No 468
>COG0819 TenA Putative transcription activator [Transcription]
Probab=32.72 E-value=2.7e+02 Score=23.63 Aligned_cols=60 Identities=15% Similarity=0.130 Sum_probs=34.3
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH-----------HHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814 293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM-----------WFEMIHKGLLPNEYTYNSMIHGYCRI 352 (427)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-----------~~~m~~~~~~p~~~~~~~li~~~~~~ 352 (427)
+.+.+....|....|+..+...+..|++.+.... ...+.+.+..+....|...++.|+..
T Consensus 98 ~~~~~~~~~~~~~aYt~ym~~~~~~g~~~~~~aAl~PC~~~Y~eig~~~~~~~~~~~~~~Y~~Wi~~Y~s~ 168 (218)
T COG0819 98 DELLKTEPSPANKAYTRYLLDTAYSGSFAELLAALLPCLWGYAEIGKRLKAKPRASPNPPYQEWIDTYASE 168 (218)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcHHHHHHHcCCH
Confidence 3444555567777888888888888876654322 12222223222445677777776543
No 469
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=32.60 E-value=3.8e+02 Score=24.28 Aligned_cols=136 Identities=12% Similarity=0.024 Sum_probs=86.2
Q ss_pred CHHHHHHHHHHHHccC------------ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 233 ENTAFNKLISRFCEKK------------NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~------------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
|+.+|-.++..--..- -.+.-+.++++..+.+. -+.......|..+.+..+.++..+-++++.....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 6667776664332211 13456677888777743 4567778888888888888898999999987743
Q ss_pred CCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHHc------CC----CCCHH-------HHHHHHHHHhhcCCHHHHHH
Q 045814 301 VPDTVMYTTVIHGLCK---MGWLGDARKMWFEMIHK------GL----LPNEY-------TYNSMIHGYCRIDNLEEAKR 360 (427)
Q Consensus 301 ~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~------~~----~p~~~-------~~~~li~~~~~~g~~~~a~~ 360 (427)
. +...|...|..... .-.++....+|.+.... +. .+-.. .+..+...+..+|..+.|..
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 3 56677777665544 23456666666554332 11 01111 22233344567899999999
Q ss_pred HHHHHHHCCC
Q 045814 361 LHKEMLDKGY 370 (427)
Q Consensus 361 ~~~~m~~~~~ 370 (427)
+++-+.+.++
T Consensus 176 ~~Qa~lE~n~ 185 (321)
T PF08424_consen 176 LWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHc
Confidence 9999988754
No 470
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=32.38 E-value=4.1e+02 Score=24.61 Aligned_cols=169 Identities=10% Similarity=0.035 Sum_probs=98.0
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-c-hhHHHHHhcC-ChhHHHHHHHHHHHCCCCCCHHHHHHH---HHHHH
Q 045814 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIES-G-YLIQAFCNDG-KVSEGYELLRQVLEDGLVPENTAFNKL---ISRFC 245 (427)
Q Consensus 172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l---i~~~~ 245 (427)
-+.++-.+-..+...|+...|.++.++.+-. + .+...+.... +..... .-......-|...|.++ |..+.
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~----~rL~~~~~eNR~fflal~r~i~~L~ 114 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN----CRLDYRRPENRQFFLALFRYIQSLG 114 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc----cccCCccccchHHHHHHHHHHHHHH
Confidence 4566777777888899998888887765421 0 0000110000 000000 00000011144444444 56778
Q ss_pred ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH-hcCChHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHccC
Q 045814 246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC-KSRKRLEAYRVFNDLKER------GYVPDTVMYTTVIHGLCKMG 318 (427)
Q Consensus 246 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~g 318 (427)
+.|.+..|.++.+-+...+..-|......+|+.|+ +.++++-.+++.+..... ..-|+ ..|+..+..+...+
T Consensus 115 ~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn-~a~S~aLA~~~l~~ 193 (360)
T PF04910_consen 115 RRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPN-FAFSIALAYFRLEK 193 (360)
T ss_pred hcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCcc-HHHHHHHHHHHhcC
Confidence 89999999999999999877667777778888775 678888888888876552 11233 45666555554333
Q ss_pred C--------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 319 W--------------LGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 319 ~--------------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
. .+.|...+.+.... -+.++..|+..+
T Consensus 194 ~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~----fP~vl~~Ll~~l 234 (360)
T PF04910_consen 194 EESSQSSAQSGRSENSESADEALQKAILR----FPWVLVPLLDKL 234 (360)
T ss_pred ccccccccccccccchhHHHHHHHHHHHH----hHHHHHHHHHHh
Confidence 3 26777777776654 223444454444
No 471
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=32.36 E-value=2.1e+02 Score=21.14 Aligned_cols=81 Identities=12% Similarity=-0.033 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045814 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 396 (427)
....++|..+.+-+...+. -....--+-+..+.+.|++++| +..-... ..||...|-+|-.. +.|-.+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~AL~a~--klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWAALCAW--KLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHHHHHHH--HCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHHHHHHH--hhccHHHHHHH
Q ss_pred HHHHHHCC
Q 045814 397 FEEMAQKG 404 (427)
Q Consensus 397 ~~~m~~~g 404 (427)
+.++..+|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
No 472
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.18 E-value=1.8e+02 Score=20.39 Aligned_cols=42 Identities=10% Similarity=0.002 Sum_probs=29.3
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 045814 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLI 200 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 200 (427)
++|+-....|+..|..+|..++..+.-.-..+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 777777777888888888877777666555555555555554
No 473
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=32.15 E-value=1.5e+02 Score=20.17 Aligned_cols=15 Identities=7% Similarity=0.155 Sum_probs=7.4
Q ss_pred HHHcCChHHHHHHHH
Q 045814 116 LVEARAFKVAMDFLD 130 (427)
Q Consensus 116 ~~~~~~~~~a~~~~~ 130 (427)
.++.|+++.+..+++
T Consensus 4 A~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 4 AAQNGNLEILKFLLE 18 (89)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344555555555544
No 474
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=31.82 E-value=5.8e+02 Score=26.18 Aligned_cols=84 Identities=11% Similarity=0.058 Sum_probs=51.0
Q ss_pred hHHHHHHHHHH-HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC---C----------CCHHHHHHHHHHHh
Q 045814 285 RLEAYRVFNDL-KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL---L----------PNEYTYNSMIHGYC 350 (427)
Q Consensus 285 ~~~a~~~~~~m-~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~----------p~~~~~~~li~~~~ 350 (427)
.++....+... .+.|+..+......++... .|++..++.+++++...|- . .+......++.++.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia~g~g~It~e~V~~lLG~~d~~~If~LldAL~ 257 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIALGSGKVAENDVRQMIGAVDKQYLYELLTGII 257 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcCCCcCHHHHHHHHcccCHHHHHHHHHHHH
Confidence 34555555544 4557777777777666654 5999999999988776431 1 11122333444433
Q ss_pred hcCCHHHHHHHHHHHHHCCCC
Q 045814 351 RIDNLEEAKRLHKEMLDKGYG 371 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~ 371 (427)
. ++...++.+++++.+.|..
T Consensus 258 ~-~d~~~al~~l~~L~~~G~d 277 (709)
T PRK08691 258 N-QDGAALLAKAQEMAACAVG 277 (709)
T ss_pred c-CCHHHHHHHHHHHHHhCCC
Confidence 3 6677777777777776654
No 475
>PRK14700 recombination factor protein RarA; Provisional
Probab=31.81 E-value=3.8e+02 Score=24.03 Aligned_cols=100 Identities=12% Similarity=0.026 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCCh
Q 045814 233 ENTAFNKLISRFCE---KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR-----KRLEAYRVFNDLKERGYVPDT 304 (427)
Q Consensus 233 ~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~ 304 (427)
+...+.-+|+++.+ -.|.+.|.-.+.+|.+.|..|....-..++-++-..| -...|...++.....|.+--.
T Consensus 122 ~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~ 201 (300)
T PRK14700 122 EGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGR 201 (300)
T ss_pred CcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHH
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
......+-.++..-+...+..-++...+
T Consensus 202 i~La~aviyLA~aPKSNs~y~A~~~A~~ 229 (300)
T PRK14700 202 LVLAQAAIYLAVAPKSNACYKALAQAQQ 229 (300)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHHHHHH
No 476
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.64 E-value=1.5e+02 Score=19.21 Aligned_cols=15 Identities=27% Similarity=0.388 Sum_probs=6.6
Q ss_pred hcCChHHHHHHHHHH
Q 045814 281 KSRKRLEAYRVFNDL 295 (427)
Q Consensus 281 ~~~~~~~a~~~~~~m 295 (427)
..|++-+|-++++.+
T Consensus 11 n~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 11 NAGDFFEAHEVLEEL 25 (62)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHH
Confidence 344444444444444
No 477
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=31.61 E-value=3.3e+02 Score=23.47 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=14.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 045814 382 AGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
-++.+.++.+.+..+.+-+.+.
T Consensus 200 La~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 200 LALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 3444557777777777766653
No 478
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.19 E-value=5.2e+02 Score=25.38 Aligned_cols=85 Identities=13% Similarity=0.093 Sum_probs=51.0
Q ss_pred HHHHHHHHH-HHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC---C----------CCHHHHHHHHHHHhh
Q 045814 286 LEAYRVFND-LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL---L----------PNEYTYNSMIHGYCR 351 (427)
Q Consensus 286 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~----------p~~~~~~~li~~~~~ 351 (427)
++....+.. +.+.|+..+......++... .|++..|..+++++...|- . ++......++.++ .
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al-~ 257 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEAL-A 257 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-H
Confidence 343444443 35567776766666555543 6899999999988765531 1 1122223344443 3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC
Q 045814 352 IDNLEEAKRLHKEMLDKGYGET 373 (427)
Q Consensus 352 ~g~~~~a~~~~~~m~~~~~~p~ 373 (427)
.|+.+.+..+++++.+.|..|.
T Consensus 258 ~~d~~~~l~~~~~l~~~g~~~~ 279 (509)
T PRK14958 258 AKAGDRLLGCVTRLVEQGVDFS 279 (509)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3677778888888887776654
No 479
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=31.17 E-value=3.5e+02 Score=26.36 Aligned_cols=62 Identities=3% Similarity=0.033 Sum_probs=45.4
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045814 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166 (427)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 166 (427)
++.++.-|-.++.-|..++++++|.++-+-.+ +...|.++.....+..+..-++..|..+.+
T Consensus 569 lpisV~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~ 630 (737)
T KOG1524|consen 569 LPISVNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQ 630 (737)
T ss_pred EeeeccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhc
Confidence 34467778888889999999999999876543 455677777777777777766666665544
No 480
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=31.08 E-value=4e+02 Score=24.08 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=27.4
Q ss_pred HHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 045814 295 LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN 338 (427)
Q Consensus 295 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 338 (427)
..+.|+..|...+..++. ...|++..|+.+++.+-..|-..+
T Consensus 201 a~~E~v~~d~~al~~I~~--~S~GdLR~Ait~Lqsls~~gk~It 242 (346)
T KOG0989|consen 201 ASKEGVDIDDDALKLIAK--ISDGDLRRAITTLQSLSLLGKRIT 242 (346)
T ss_pred HHHhCCCCCHHHHHHHHH--HcCCcHHHHHHHHHHhhccCcccc
Confidence 355667667777766555 346778888888877766554444
No 481
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=31.06 E-value=3.5e+02 Score=23.41 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=56.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCChH
Q 045814 209 FCNDGKVSEGYELLRQVLEDGLVPEN-TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRL 286 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~ 286 (427)
|.....++.|...+.+.+.. .|+. .-|+.-+.++.+.++++.+..--.+.++. .|+.+ ..-.+..+......++
T Consensus 20 ~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~ 95 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYD 95 (284)
T ss_pred ccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcccc
Confidence 33445566666655555543 3333 23344445555666666655544444433 34432 2333444555566666
Q ss_pred HHHHHHHHHHh----CCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 045814 287 EAYRVFNDLKE----RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329 (427)
Q Consensus 287 ~a~~~~~~m~~----~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 329 (427)
+|+.++.+... ..+.+.......|..+=-+.-...+..++.++
T Consensus 96 eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 96 EAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 77666666522 22333333444444443333334444444443
No 482
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=30.55 E-value=1.5e+02 Score=22.11 Aligned_cols=90 Identities=16% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhhcCCCCC-CHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814 87 LLSIRFFQWLHSHYGFSP-DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165 (427)
Q Consensus 87 ~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 165 (427)
..+...+..+....|+.| |+.+=-++...+.....+.. .+.-...|..-+-.||. |+++.....+=++.
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~~~~~-~~~~~d~g~e~~~~t~~---------Ge~~~~~~~ll~q~ 75 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPSIPSD-EDIKDDSGLELNWKTFT---------GEYDDIYEALLKQR 75 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCCCCCC-CccCCCCCeEEeeeeec---------CchHHHHHHHHHHH
Confidence 456677778877788888 76665555555544433320 00001112222222222 66666665555554
Q ss_pred hcCCCcCHhhHHHHHHHHHHcC
Q 045814 166 EMGVFGSIKTWNSALLGCIKID 187 (427)
Q Consensus 166 ~~g~~p~~~~~~~ll~~~~~~~ 187 (427)
. |...|...+...+.++...|
T Consensus 76 ~-g~~~d~~~l~~~~~~Hl~rG 96 (113)
T PF08870_consen 76 Y-GPELDDEELPKYFKLHLDRG 96 (113)
T ss_pred h-CCCCCHHHHHHHHHHHHHHh
Confidence 4 66668888887777776655
No 483
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=30.18 E-value=3.4e+02 Score=22.92 Aligned_cols=25 Identities=20% Similarity=0.060 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 379 TLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.+.....+.|+.++|.+.|.++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 3445556777777888777777765
No 484
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=29.53 E-value=4.6e+02 Score=24.26 Aligned_cols=55 Identities=20% Similarity=0.183 Sum_probs=29.6
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCC
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI----AGLCLHGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g 404 (427)
.+-++..-|......+.++.+..=..+|.+|= ...+..+..++|.+..-+|.+.|
T Consensus 288 ~kDnnt~l~k~av~sl~k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~ 346 (422)
T KOG2582|consen 288 TKDNNTGLAKQAVSSLYKKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDG 346 (422)
T ss_pred hhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccC
Confidence 34455666666666665554333344454442 22334566667776666666654
No 485
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=29.44 E-value=4.9e+02 Score=24.57 Aligned_cols=62 Identities=18% Similarity=0.113 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHhhC--CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 235 TAFNKLISRFCEKKNFGRVSELLHTMVAR--NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
.+.-.|++...-.||.....+.++.|.+. |-.|...+---+.-+|.-.|++.+|.++|-...
T Consensus 236 fsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 236 FSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 34555677777789988888888877654 334433222456667778889999999887764
No 486
>PLN03025 replication factor C subunit; Provisional
Probab=28.53 E-value=4.4e+02 Score=23.76 Aligned_cols=102 Identities=8% Similarity=-0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC------------CCCCChhhHHHHHHHHHhcC
Q 045814 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK------------GYGETTVTYNTLIAGLCLHG 388 (427)
Q Consensus 321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------~~~p~~~~~~~li~~~~~~g 388 (427)
+....+-..+.+.|+..+......++..+. |++..+...++..... .-.+.......+++.... +
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~-~ 238 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK-G 238 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc-C
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427 (427)
Q Consensus 389 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 427 (427)
+.++|...+.+|...|+.|....... ..+...-++++
T Consensus 239 ~~~~a~~~l~~ll~~g~~~~~Il~~l--~~~~~~~~~~~ 275 (319)
T PLN03025 239 KFDDACDGLKQLYDLGYSPTDIITTL--FRVVKNYDMPE 275 (319)
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHhcCCCH
No 487
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.52 E-value=1.2e+02 Score=27.59 Aligned_cols=90 Identities=20% Similarity=0.086 Sum_probs=41.1
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH-hhHHHHHHHHHhcCChHH
Q 045814 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN-FTYEEVINGLCKSRKRLE 287 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~ 287 (427)
....|.++.|++.|...+.... +....|..-.+.+.+.++...|++=+......+ ||. .-|-.--.+..-.|++++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHH
Confidence 3344555555555555554432 233444444455555555555555555444432 222 122222223333455555
Q ss_pred HHHHHHHHHhCCCC
Q 045814 288 AYRVFNDLKERGYV 301 (427)
Q Consensus 288 a~~~~~~m~~~~~~ 301 (427)
|-+.|....+.+..
T Consensus 201 aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 201 AAHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHHhcccc
Confidence 55555555555443
No 488
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=28.44 E-value=1.9e+02 Score=19.50 Aligned_cols=61 Identities=15% Similarity=0.181 Sum_probs=36.0
Q ss_pred hHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814 86 VLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK 165 (427)
Q Consensus 86 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 165 (427)
.+.|.+++..++.. -+.++..||++-..+.+.+ |.-..+.|+.... |....|++-|.+|.
T Consensus 13 tEmA~~mL~DLr~d--ekRsPQLYnAI~k~L~RHk--------F~iskl~pd~~~L----------G~L~~aL~ey~~~~ 72 (82)
T PF11123_consen 13 TEMAQQMLADLRDD--EKRSPQLYNAIGKLLDRHK--------FQISKLQPDENIL----------GELAAALEEYKKMV 72 (82)
T ss_pred HHHHHHHHHHhcch--hhcChHHHHHHHHHHHHcc--------chhhhcCccHHHH----------HHHHHHHHHHHHHc
Confidence 45556666666433 3567788888777665554 2333556776655 44455666666665
Q ss_pred h
Q 045814 166 E 166 (427)
Q Consensus 166 ~ 166 (427)
.
T Consensus 73 g 73 (82)
T PF11123_consen 73 G 73 (82)
T ss_pred C
Confidence 3
No 489
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=27.90 E-value=7.8e+02 Score=26.42 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHccC--CHHHHHHHHHHHHHc
Q 045814 304 TVMYTTVIHGLCKMG--WLGDARKMWFEMIHK 333 (427)
Q Consensus 304 ~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 333 (427)
..-...++.+|++.+ ++++|+.+..++++.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 345566788888887 788888888888765
No 490
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=27.90 E-value=1.6e+02 Score=28.10 Aligned_cols=102 Identities=14% Similarity=0.015 Sum_probs=50.9
Q ss_pred HHHccCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814 243 RFCEKKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321 (427)
Q Consensus 243 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (427)
.+.+.++++.|..++.+.++. .||.. .|..--.++.+.+++..|+.=+.++.+.... -...|-.=..++...+++.
T Consensus 13 ~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 13 EALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred hhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHH
Confidence 344556666666666666655 34332 2333335666667776666666666555311 1112222223333444455
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 322 DARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
+|...|+.... +.|+..-....+.-|
T Consensus 90 ~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 90 KALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 55555555444 355555554444443
No 491
>PF10963 DUF2765: Protein of unknown function (DUF2765); InterPro: IPR024406 This family of proteins with no known function is found in phages and suspected prophages.
Probab=27.74 E-value=1.4e+02 Score=20.68 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=25.0
Q ss_pred CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc
Q 045814 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST 132 (427)
Q Consensus 101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 132 (427)
.|.|+...||.++......+...-|..++.+.
T Consensus 11 ~F~pt~~~yn~yiN~~~~~nkVaPa~n~L~r~ 42 (83)
T PF10963_consen 11 TFNPTPTAYNKYINEMAMDNKVAPAHNYLMRI 42 (83)
T ss_pred EeccCHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 47888888988888888888877777776653
No 492
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=27.73 E-value=1.8e+02 Score=19.03 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=14.0
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 045814 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423 (427)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 423 (427)
+.+-.+..+.+.+...|...+..+..-.+.+.-+.|
T Consensus 11 ~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 11 DKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 333333333333333333333344444444433333
No 493
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.50 E-value=6.2e+02 Score=25.12 Aligned_cols=173 Identities=10% Similarity=0.015 Sum_probs=0.0
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc-----------------------CCCCCHHhHHHH---HHHHHhcCChhHHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST-----------------------GFSPNPNSLELY---IQCLCESGLIEEAFC 159 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-----------------------~~~~~~~~~~~l---i~~~~~~~~~~~A~~ 159 (427)
+.+.-.+.+++-.+|+.+.|.+++++. ...-|-..|-+| |+.+.+.|.+..|++
T Consensus 284 vdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E 363 (665)
T KOG2422|consen 284 VDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALE 363 (665)
T ss_pred hhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHH
Q ss_pred HHHHHHhcCCCcCHhhHHHHHHHHH-HcCChhHHHHHHHHHHhcch------------hHHHHHhcCC---hhHHHHHHH
Q 045814 160 AFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIESGY------------LIQAFCNDGK---VSEGYELLR 223 (427)
Q Consensus 160 ~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~------------l~~~~~~~g~---~~~a~~~~~ 223 (427)
+-..+.+....-|+...-.+|+.|+ +..++...+++++.....+. +...|..... -+.|...+.
T Consensus 364 ~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~ 443 (665)
T KOG2422|consen 364 WCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALL 443 (665)
T ss_pred HHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHH
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 224 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
+....-.. ..+-|+..+.-. .+.+...++.....-..+...++..++..|....+
T Consensus 444 qAl~~~P~----vl~eLld~~~l~--~da~~~~~k~~~~~a~~~e~pal~~lv~lY~~r~~ 498 (665)
T KOG2422|consen 444 QALKHHPL----VLSELLDELLLG--DDALTKDLKFDGSSAENSELPALMLLVKLYANRNE 498 (665)
T ss_pred HHHHhCcH----HHHHHHHhccCC--chhhhhhhcccccccccccchHHHHHHHHHHhhhh
No 494
>PHA03100 ankyrin repeat protein; Provisional
Probab=27.34 E-value=5.6e+02 Score=24.56 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=29.1
Q ss_pred HHHcCChHHHHHHHHhcCCCCC---HHhHHHHHHHHH-hcCChhHHHHHHHHHHhcCCCcCHhh--HHHHHHHHHHcC
Q 045814 116 LVEARAFKVAMDFLDSTGFSPN---PNSLELYIQCLC-ESGLIEEAFCAFSKLKEMGVFGSIKT--WNSALLGCIKID 187 (427)
Q Consensus 116 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~-~~~~~~~A~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~ 187 (427)
....|..+-+.-+++. |..++ ....+.|..+.. ..|+.+ +++.+.+.|..++... -...+...+..|
T Consensus 80 a~~~~~~~iv~~Ll~~-ga~i~~~d~~g~tpL~~A~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 152 (480)
T PHA03100 80 YNLTDVKEIVKLLLEY-GANVNAPDNNGITPLLYAISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESN 152 (480)
T ss_pred HHhhchHHHHHHHHHC-CCCCCCCCCCCCchhhHHHhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcC
Confidence 5556666555555543 33322 222333333332 445444 3344445555443321 123444445555
No 495
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=27.33 E-value=4e+02 Score=22.88 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=32.9
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChhHHHHHHHHHhh
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE-KKNFGRVSELLHTMVA 262 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~ 262 (427)
+++.+-..|+++++...++++...+...+..--+.|-.+|-. -|....+.+++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 345556677777777777777777666666655555555522 3444555555555443
No 496
>PRK10941 hypothetical protein; Provisional
Probab=27.23 E-value=4.4e+02 Score=23.26 Aligned_cols=56 Identities=11% Similarity=-0.044 Sum_probs=24.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+-.+|.+.++++.|.++.+.+.... +.|+.-+.--.-.|.+.|.+..|..=++...
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3334444555555555555554431 1123333333334445555555554444443
No 497
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.08 E-value=1.2e+02 Score=27.62 Aligned_cols=83 Identities=11% Similarity=-0.062 Sum_probs=49.2
Q ss_pred HcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 045814 185 KIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256 (427)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 256 (427)
..|.++.|.+.|...+..+. -.+++.+.++...|++-+......+.. +...|-.--.+-...|+|++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHHH
Confidence 45677777777777776643 244556667777777766665553322 122233222333446778888877
Q ss_pred HHHHhhCCCCCC
Q 045814 257 LHTMVARNRAPD 268 (427)
Q Consensus 257 ~~~m~~~~~~~~ 268 (427)
|....+.+..+.
T Consensus 205 l~~a~kld~dE~ 216 (377)
T KOG1308|consen 205 LALACKLDYDEA 216 (377)
T ss_pred HHHHHhccccHH
Confidence 777777765443
No 498
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=27.06 E-value=7.1e+02 Score=25.69 Aligned_cols=184 Identities=17% Similarity=0.223 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC------CCH-hhHHHHHHHHHhcCCh
Q 045814 216 SEGYELLRQVLEDGLVP---ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA------PDN-FTYEEVINGLCKSRKR 285 (427)
Q Consensus 216 ~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~------~~~-~~~~~ll~~~~~~~~~ 285 (427)
++--..+.+|..+--.| ...+...++-.|....+++...++.+.+...--. +++ +.|...++-=-+.|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 34445667777543333 4556677777888888999999999988765211 111 2445555555567888
Q ss_pred HHHHHHHHHHHhC--CCCCChhh-----HHH--HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcC
Q 045814 286 LEAYRVFNDLKER--GYVPDTVM-----YTT--VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT---YNSMIHGYCRID 353 (427)
Q Consensus 286 ~~a~~~~~~m~~~--~~~p~~~~-----~~~--li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g 353 (427)
++|+.+.-.+.+. .+.||... |-- +-+.|...+..+.|...|++.-+. .|+... +..|+.+-.+
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~-- 335 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGE-- 335 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhh--
Confidence 8998888777654 24455432 211 123344556678888888888764 666543 3333333221
Q ss_pred CHHHHHHH------HHHHH-HCCCCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 354 NLEEAKRL------HKEML-DKGYGETTVTY---NTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 354 ~~~~a~~~------~~~m~-~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.++...++ +..+. +.|.--....| ...+.+-.-++++.+|...-+.|-+.
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKL 395 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKL 395 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhcc
Confidence 12222211 11111 11111111111 12234445567888888888777764
No 499
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=26.93 E-value=2.2e+02 Score=27.17 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=67.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcC
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMY-TTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRID 353 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g 353 (427)
.+.+.+.++++.|..++.++.+. .||...| ..-..++.+.+++..|+.=..++.+.. |+ ...|..=..++.+.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--P~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD--PTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC--chhhheeeeccHHHHhHH
Confidence 34556778899999999999887 4554443 333478889999999988888887764 32 122222233444455
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
.+.+|...|+.... +.|+..-....+.-|-
T Consensus 87 ~~~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~ 116 (476)
T KOG0376|consen 87 EFKKALLDLEKVKK--LAPNDPDATRKIDECN 116 (476)
T ss_pred HHHHHHHHHHHhhh--cCcCcHHHHHHHHHHH
Confidence 66666666666554 4677666666665543
No 500
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=26.83 E-value=1.9e+02 Score=18.87 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=20.0
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHh
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLV 107 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~ 107 (427)
..|++.|++.|..+..+..++|+.+
T Consensus 38 ~Wd~~~Al~~F~~lk~~~~IP~eAF 62 (63)
T smart00804 38 NWDYERALKNFTELKSEGSIPPEAF 62 (63)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhc
Confidence 4688999999999977766777654
Done!