Query 045814
Match_columns 427
No_of_seqs 540 out of 2975
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 09:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 8.4E-35 2.9E-39 276.2 23.9 206 217-422 8-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.3E-32 4.4E-37 261.2 24.4 207 155-387 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 4.4E-30 1.5E-34 252.4 42.5 344 75-426 122-567 (597)
4 2xpi_A Anaphase-promoting comp 100.0 2.2E-30 7.6E-35 254.5 32.4 340 79-426 93-533 (597)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.9E-24 6.6E-29 200.7 44.5 366 37-424 12-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-24 4.3E-29 201.9 41.5 341 78-427 7-357 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.3E-20 8E-25 176.5 39.2 342 76-426 32-442 (450)
8 2y4t_A DNAJ homolog subfamily 99.9 8.8E-21 3E-25 179.4 35.7 305 103-416 23-370 (450)
9 2gw1_A Mitochondrial precursor 99.9 3.1E-20 1.1E-24 178.6 35.3 341 77-426 13-466 (514)
10 3ieg_A DNAJ homolog subfamily 99.9 2.2E-18 7.4E-23 157.5 36.7 322 78-422 11-353 (359)
11 2gw1_A Mitochondrial precursor 99.9 2.9E-19 9.9E-24 171.8 29.1 315 106-426 6-432 (514)
12 3hym_B Cell division cycle pro 99.8 5.4E-18 1.9E-22 153.0 31.5 291 102-425 18-321 (330)
13 3fp2_A TPR repeat-containing p 99.8 6.2E-18 2.1E-22 163.5 32.5 224 176-403 246-491 (537)
14 3ieg_A DNAJ homolog subfamily 99.8 8.8E-17 3E-21 146.7 36.5 276 76-385 43-351 (359)
15 3spa_A Mtrpol, DNA-directed RN 99.8 2.1E-20 7.1E-25 183.0 11.0 151 268-423 126-286 (1134)
16 3fp2_A TPR repeat-containing p 99.8 5E-17 1.7E-21 157.1 34.7 234 187-426 216-479 (537)
17 3hym_B Cell division cycle pro 99.8 2.5E-17 8.5E-22 148.7 30.5 283 76-391 28-322 (330)
18 3spa_A Mtrpol, DNA-directed RN 99.8 1.4E-20 4.9E-25 184.2 9.3 152 232-388 125-286 (1134)
19 1fch_A Peroxisomal targeting s 99.8 9.1E-18 3.1E-22 154.2 25.8 278 106-399 64-355 (368)
20 1fch_A Peroxisomal targeting s 99.8 3.4E-17 1.2E-21 150.4 26.5 276 74-365 68-356 (368)
21 4eqf_A PEX5-related protein; a 99.8 9.5E-18 3.3E-22 154.1 21.9 274 106-399 65-352 (365)
22 4eqf_A PEX5-related protein; a 99.8 8.7E-17 3E-21 147.6 25.5 270 74-364 69-352 (365)
23 3cv0_A Peroxisome targeting si 99.8 1.4E-16 4.9E-21 143.5 25.1 279 105-401 20-313 (327)
24 3cv0_A Peroxisome targeting si 99.8 4.5E-16 1.5E-20 140.2 26.1 274 74-366 25-313 (327)
25 2xm6_A Protein corresponding t 99.8 7.4E-14 2.5E-18 133.4 42.8 314 83-421 56-411 (490)
26 1b89_A Protein (clathrin heavy 99.7 8.9E-17 3.1E-21 146.2 17.5 287 76-396 9-304 (449)
27 3mkr_A Coatomer subunit epsilo 99.7 9.2E-15 3.2E-19 129.5 28.0 251 113-403 6-264 (291)
28 2xm6_A Protein corresponding t 99.7 3.1E-13 1E-17 129.2 40.6 309 76-406 81-435 (490)
29 1b89_A Protein (clathrin heavy 99.7 8.9E-17 3.1E-21 146.2 14.7 271 117-426 14-299 (449)
30 3mkr_A Coatomer subunit epsilo 99.7 8.1E-15 2.8E-19 129.8 26.0 270 81-395 10-286 (291)
31 2ooe_A Cleavage stimulation fa 99.7 4.3E-13 1.5E-17 129.4 38.0 204 217-425 256-479 (530)
32 4g1t_A Interferon-induced prot 99.7 5.7E-14 2E-18 133.4 30.8 334 75-412 56-469 (472)
33 3uq3_A Heat shock protein STI1 99.7 1.8E-14 6.2E-19 124.9 23.6 223 106-331 5-234 (258)
34 3uq3_A Heat shock protein STI1 99.7 6.6E-14 2.2E-18 121.3 25.2 228 138-403 5-236 (258)
35 4g1t_A Interferon-induced prot 99.6 9.2E-13 3.1E-17 125.1 34.2 322 102-427 47-448 (472)
36 2ho1_A Type 4 fimbrial biogene 99.6 6.4E-13 2.2E-17 114.9 25.5 204 206-415 44-248 (252)
37 2pl2_A Hypothetical conserved 99.6 1.1E-13 3.6E-18 117.2 20.0 188 208-401 14-212 (217)
38 2pl2_A Hypothetical conserved 99.6 1.1E-13 3.7E-18 117.1 19.8 115 248-366 98-212 (217)
39 1ouv_A Conserved hypothetical 99.6 3.4E-12 1.2E-16 111.9 29.6 228 137-404 5-252 (273)
40 1xi4_A Clathrin heavy chain; a 99.6 1.5E-11 5.1E-16 125.0 36.9 300 81-421 996-1326(1630)
41 2vq2_A PILW, putative fimbrial 99.6 1.3E-12 4.4E-17 110.6 25.0 206 206-416 15-222 (225)
42 3u4t_A TPR repeat-containing p 99.6 5.7E-13 2E-17 116.6 23.3 234 140-403 5-250 (272)
43 1xnf_A Lipoprotein NLPI; TPR, 99.6 1E-13 3.5E-18 121.5 18.5 244 118-397 17-269 (275)
44 2ooe_A Cleavage stimulation fa 99.6 7.2E-11 2.4E-15 113.9 39.7 209 191-403 256-492 (530)
45 1ouv_A Conserved hypothetical 99.6 7.1E-12 2.4E-16 109.8 29.3 224 105-369 5-252 (273)
46 2ho1_A Type 4 fimbrial biogene 99.6 2.9E-12 9.8E-17 110.8 26.4 201 138-368 37-238 (252)
47 2h6f_A Protein farnesyltransfe 99.6 2E-12 6.7E-17 118.6 26.0 228 106-365 97-344 (382)
48 2vq2_A PILW, putative fimbrial 99.6 3.4E-12 1.2E-16 107.9 25.9 202 138-368 8-211 (225)
49 1xi4_A Clathrin heavy chain; a 99.6 2E-11 6.9E-16 124.1 35.0 304 75-426 1054-1372(1630)
50 2q7f_A YRRB protein; TPR, prot 99.6 4.3E-13 1.5E-17 115.1 20.4 193 206-403 30-222 (243)
51 3sf4_A G-protein-signaling mod 99.6 4.1E-13 1.4E-17 124.6 21.3 302 103-425 6-363 (406)
52 3u4t_A TPR repeat-containing p 99.5 2.4E-12 8.3E-17 112.5 24.5 217 206-426 10-238 (272)
53 2h6f_A Protein farnesyltransfe 99.5 3.7E-12 1.3E-16 116.7 25.8 248 138-420 97-364 (382)
54 4a1s_A PINS, partner of inscut 99.5 5.1E-13 1.7E-17 124.4 20.3 277 106-403 48-372 (411)
55 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-12 4.2E-17 112.3 20.2 199 139-368 24-222 (243)
56 3sf4_A G-protein-signaling mod 99.5 3.7E-13 1.3E-17 124.8 18.1 293 76-390 15-363 (406)
57 1xnf_A Lipoprotein NLPI; TPR, 99.5 6.4E-13 2.2E-17 116.3 18.3 245 83-362 18-269 (275)
58 3ro2_A PINS homolog, G-protein 99.5 9.6E-13 3.3E-17 118.4 18.5 274 108-403 7-332 (338)
59 4a1s_A PINS, partner of inscut 99.5 2.1E-12 7.1E-17 120.3 19.5 268 78-368 56-372 (411)
60 2ond_A Cleavage stimulation fa 99.5 8.6E-11 3E-15 104.9 29.0 224 155-403 33-270 (308)
61 3nf1_A KLC 1, kinesin light ch 99.5 9.5E-13 3.2E-17 117.4 15.5 245 138-402 27-306 (311)
62 3ro2_A PINS homolog, G-protein 99.5 3.2E-12 1.1E-16 115.0 18.5 271 77-368 12-332 (338)
63 3vtx_A MAMA; tetratricopeptide 99.5 1.9E-11 6.6E-16 100.1 21.6 171 233-409 4-174 (184)
64 3ulq_A Response regulator aspa 99.4 3.7E-11 1.3E-15 110.8 24.5 234 144-402 109-367 (383)
65 3e4b_A ALGK; tetratricopeptide 99.4 1.3E-10 4.3E-15 109.6 26.0 307 76-403 9-351 (452)
66 4abn_A Tetratricopeptide repea 99.4 4.2E-11 1.5E-15 113.6 22.5 191 205-400 108-318 (474)
67 1hz4_A MALT regulatory protein 99.4 2.9E-10 1E-14 104.3 26.9 271 110-402 18-321 (373)
68 3vtx_A MAMA; tetratricopeptide 99.4 1.4E-10 4.8E-15 94.9 21.9 167 137-333 4-170 (184)
69 2ond_A Cleavage stimulation fa 99.4 4.9E-10 1.7E-14 99.9 26.4 215 123-368 33-270 (308)
70 3q15_A PSP28, response regulat 99.4 4E-10 1.4E-14 103.7 25.5 165 234-402 182-364 (378)
71 4abn_A Tetratricopeptide repea 99.4 4.8E-11 1.6E-15 113.2 19.5 213 122-365 84-318 (474)
72 3ulq_A Response regulator aspa 99.3 5.9E-11 2E-15 109.5 19.2 231 112-367 109-367 (383)
73 3nf1_A KLC 1, kinesin light ch 99.3 1.1E-11 3.7E-16 110.5 13.7 244 105-368 26-307 (311)
74 3e4b_A ALGK; tetratricopeptide 99.3 4.9E-10 1.7E-14 105.5 25.6 298 85-406 53-390 (452)
75 3as5_A MAMA; tetratricopeptide 99.3 2.5E-10 8.6E-15 93.0 19.5 166 234-403 8-173 (186)
76 3edt_B KLC 2, kinesin light ch 99.3 9.4E-11 3.2E-15 102.6 15.8 217 185-402 13-280 (283)
77 4gyw_A UDP-N-acetylglucosamine 99.3 2.4E-10 8.3E-15 113.0 20.1 166 233-402 8-173 (723)
78 1hz4_A MALT regulatory protein 99.3 2.9E-09 1E-13 97.6 26.0 267 79-368 23-322 (373)
79 3q15_A PSP28, response regulat 99.3 9.2E-10 3.1E-14 101.2 21.9 218 206-426 108-353 (378)
80 3as5_A MAMA; tetratricopeptide 99.2 6.1E-10 2.1E-14 90.7 17.9 159 206-368 15-173 (186)
81 4i17_A Hypothetical protein; T 99.2 1.9E-09 6.4E-14 91.5 20.8 194 205-412 13-216 (228)
82 3edt_B KLC 2, kinesin light ch 99.2 3.1E-10 1.1E-14 99.3 16.0 163 205-368 91-281 (283)
83 4gyw_A UDP-N-acetylglucosamine 99.2 1.1E-09 3.7E-14 108.4 19.3 154 210-367 20-173 (723)
84 4e6h_A MRNA 3'-END-processing 99.1 1.7E-07 5.8E-12 91.8 31.5 190 233-425 342-557 (679)
85 3mv2_B Coatomer subunit epsilo 99.1 2.7E-08 9.1E-13 86.9 22.8 179 218-403 85-282 (310)
86 4i17_A Hypothetical protein; T 99.1 1.2E-08 4.1E-13 86.4 20.2 192 105-334 6-210 (228)
87 1qqe_A Vesicular transport pro 99.1 4.9E-09 1.7E-13 92.7 17.8 206 189-402 33-268 (292)
88 2fo7_A Synthetic consensus TPR 99.1 8.5E-09 2.9E-13 78.9 16.8 129 272-403 4-132 (136)
89 1qqe_A Vesicular transport pro 99.1 2.4E-08 8.2E-13 88.2 21.7 212 121-367 32-268 (292)
90 2fo7_A Synthetic consensus TPR 99.0 2E-08 6.8E-13 76.7 16.6 130 236-368 3-132 (136)
91 4e6h_A MRNA 3'-END-processing 99.0 1.4E-06 4.9E-11 85.2 33.4 210 205-419 349-584 (679)
92 3urz_A Uncharacterized protein 99.0 2.5E-08 8.6E-13 83.2 16.8 137 275-417 60-198 (208)
93 3rjv_A Putative SEL1 repeat pr 99.0 1.1E-07 3.7E-12 79.6 20.4 180 216-407 3-201 (212)
94 3qky_A Outer membrane assembly 99.0 4E-08 1.4E-12 85.1 18.4 170 233-403 14-224 (261)
95 3mv2_B Coatomer subunit epsilo 99.0 1.3E-07 4.6E-12 82.4 21.0 157 206-368 107-282 (310)
96 2ifu_A Gamma-SNAP; membrane fu 98.9 1.9E-08 6.4E-13 89.6 15.1 227 150-397 3-255 (307)
97 2pzi_A Probable serine/threoni 98.9 9.2E-09 3.1E-13 102.0 14.3 173 210-389 402-583 (681)
98 3qky_A Outer membrane assembly 98.9 4.1E-08 1.4E-12 85.1 16.6 159 208-368 24-224 (261)
99 3urz_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 82.3 15.4 135 240-380 60-196 (208)
100 2ifu_A Gamma-SNAP; membrane fu 98.9 2.8E-08 9.6E-13 88.4 15.5 213 119-360 4-253 (307)
101 4ga2_A E3 SUMO-protein ligase 98.9 8.3E-09 2.8E-13 81.2 9.6 141 244-388 7-148 (150)
102 3dra_A Protein farnesyltransfe 98.9 2E-06 6.8E-11 75.7 25.7 151 213-366 124-285 (306)
103 2yhc_A BAMD, UPF0169 lipoprote 98.9 3.2E-07 1.1E-11 77.5 19.9 178 206-404 11-214 (225)
104 4ga2_A E3 SUMO-protein ligase 98.9 1.6E-08 5.6E-13 79.5 10.9 145 275-424 3-149 (150)
105 2r5s_A Uncharacterized protein 98.9 3.6E-08 1.2E-12 79.8 12.8 163 236-402 8-172 (176)
106 2vsy_A XCC0866; transferase, g 98.8 8.8E-08 3E-12 93.0 17.6 154 212-369 2-158 (568)
107 2vsy_A XCC0866; transferase, g 98.8 9E-08 3.1E-12 93.0 17.5 146 186-334 2-158 (568)
108 2r5s_A Uncharacterized protein 98.8 3.1E-08 1.1E-12 80.3 11.9 157 207-367 14-172 (176)
109 3dra_A Protein farnesyltransfe 98.8 3.9E-06 1.3E-10 73.8 25.5 226 149-403 44-287 (306)
110 3qou_A Protein YBBN; thioredox 98.8 1.4E-07 4.8E-12 83.0 16.5 166 233-402 116-283 (287)
111 2pzi_A Probable serine/threoni 98.8 4.2E-08 1.4E-12 97.3 14.5 172 245-423 402-582 (681)
112 2yhc_A BAMD, UPF0169 lipoprote 98.8 5.4E-07 1.9E-11 76.0 19.1 179 172-369 3-214 (225)
113 3rjv_A Putative SEL1 repeat pr 98.8 8.5E-07 2.9E-11 74.1 19.2 82 214-298 68-158 (212)
114 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.1E-07 2.8E-11 74.0 18.7 129 235-368 7-150 (213)
115 3u3w_A Transcriptional activat 98.8 1.4E-06 4.9E-11 76.7 21.2 164 239-402 80-265 (293)
116 3qou_A Protein YBBN; thioredox 98.7 2.7E-07 9.1E-12 81.2 15.0 157 207-367 125-283 (287)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.3E-06 4.6E-11 72.6 17.8 125 204-334 11-151 (213)
118 2uy1_A Cleavage stimulation fa 98.7 4.7E-05 1.6E-09 72.1 30.0 124 271-402 288-412 (493)
119 3u3w_A Transcriptional activat 98.7 5.3E-06 1.8E-10 73.0 22.0 162 206-367 82-265 (293)
120 2qfc_A PLCR protein; TPR, HTH, 98.7 3E-06 1E-10 74.6 19.9 166 236-401 77-264 (293)
121 1a17_A Serine/threonine protei 98.6 1.5E-06 5E-11 69.0 15.7 128 271-401 15-144 (166)
122 3gw4_A Uncharacterized protein 98.6 4.6E-07 1.6E-11 74.8 13.1 133 270-402 27-175 (203)
123 3q7a_A Farnesyltransferase alp 98.6 3.8E-05 1.3E-09 68.4 25.0 185 215-403 105-331 (349)
124 2qfc_A PLCR protein; TPR, HTH, 98.6 4.2E-06 1.4E-10 73.7 18.9 163 205-367 81-265 (293)
125 2uy1_A Cleavage stimulation fa 98.6 8.2E-05 2.8E-09 70.5 28.5 320 84-424 28-399 (493)
126 2vyi_A SGTA protein; chaperone 98.6 3.2E-06 1.1E-10 63.8 15.4 119 304-425 12-130 (131)
127 1a17_A Serine/threonine protei 98.6 2.7E-06 9.3E-11 67.4 15.5 129 235-366 14-144 (166)
128 1na0_A Designed protein CTPR3; 98.6 4.1E-06 1.4E-10 62.5 15.6 97 305-403 10-106 (125)
129 2e2e_A Formate-dependent nitri 98.6 7.1E-07 2.4E-11 72.0 11.9 121 245-368 21-144 (177)
130 3gw4_A Uncharacterized protein 98.5 1.1E-06 3.7E-11 72.5 12.9 157 210-367 3-175 (203)
131 1na0_A Designed protein CTPR3; 98.5 3.8E-06 1.3E-10 62.8 15.0 97 270-368 10-106 (125)
132 4gco_A Protein STI-1; structur 98.5 2.6E-06 9E-11 64.5 14.0 93 273-367 17-109 (126)
133 2lni_A Stress-induced-phosphop 98.5 3E-06 1E-10 64.3 14.2 94 271-366 18-111 (133)
134 4gco_A Protein STI-1; structur 98.5 3.5E-06 1.2E-10 63.7 14.1 107 235-345 14-121 (126)
135 2e2e_A Formate-dependent nitri 98.5 8.6E-07 2.9E-11 71.6 11.3 123 209-334 20-145 (177)
136 2vyi_A SGTA protein; chaperone 98.5 3.6E-06 1.2E-10 63.5 13.9 117 270-389 13-129 (131)
137 2lni_A Stress-induced-phosphop 98.5 3.9E-06 1.3E-10 63.6 14.1 120 302-424 14-133 (133)
138 4f3v_A ESX-1 secretion system 98.5 1.7E-06 5.8E-11 74.5 13.1 197 211-415 18-247 (282)
139 2vgx_A Chaperone SYCD; alterna 98.5 2.2E-06 7.5E-11 67.0 12.0 96 270-367 22-117 (148)
140 3gyz_A Chaperone protein IPGC; 98.5 6.3E-06 2.1E-10 64.5 14.6 96 306-403 38-133 (151)
141 1p5q_A FKBP52, FK506-binding p 98.5 3.8E-06 1.3E-10 75.6 15.1 124 233-358 146-283 (336)
142 1p5q_A FKBP52, FK506-binding p 98.5 3.7E-06 1.3E-10 75.7 14.9 121 271-393 149-283 (336)
143 4f3v_A ESX-1 secretion system 98.5 4.9E-06 1.7E-10 71.6 14.8 129 237-368 105-237 (282)
144 3gyz_A Chaperone protein IPGC; 98.4 6.4E-06 2.2E-10 64.4 14.2 97 270-368 37-133 (151)
145 2c2l_A CHIP, carboxy terminus 98.4 9.7E-07 3.3E-11 77.3 10.0 187 206-403 11-199 (281)
146 2c2l_A CHIP, carboxy terminus 98.4 2.2E-06 7.6E-11 75.0 12.1 96 105-201 3-100 (281)
147 2vgx_A Chaperone SYCD; alterna 98.4 3.9E-06 1.3E-10 65.6 11.4 95 306-402 23-117 (148)
148 4b4t_Q 26S proteasome regulato 98.4 2.1E-05 7.2E-10 73.2 18.4 165 237-401 58-243 (434)
149 3upv_A Heat shock protein STI1 98.3 2E-05 6.8E-10 59.3 13.9 95 306-402 6-100 (126)
150 3q7a_A Farnesyltransferase alp 98.3 0.00025 8.7E-09 63.1 22.6 32 337-368 300-331 (349)
151 4gcn_A Protein STI-1; structur 98.3 1.5E-05 5E-10 60.4 12.7 96 306-402 10-111 (127)
152 1elw_A TPR1-domain of HOP; HOP 98.3 3.4E-05 1.2E-09 56.8 14.5 93 308-402 8-100 (118)
153 1elw_A TPR1-domain of HOP; HOP 98.3 4E-05 1.4E-09 56.4 14.8 110 268-380 3-112 (118)
154 4gcn_A Protein STI-1; structur 98.3 1.5E-05 5E-10 60.4 12.5 96 271-367 10-111 (127)
155 3upv_A Heat shock protein STI1 98.3 2E-05 6.9E-10 59.3 13.2 95 271-367 6-100 (126)
156 2fbn_A 70 kDa peptidylprolyl i 98.3 1.8E-05 6.1E-10 65.1 13.4 131 271-403 40-186 (198)
157 1elr_A TPR2A-domain of HOP; HO 98.3 1.7E-05 5.9E-10 59.7 12.4 97 306-403 6-108 (131)
158 2kck_A TPR repeat; tetratricop 98.3 2.2E-05 7.5E-10 57.2 12.6 96 306-403 8-106 (112)
159 2xcb_A PCRH, regulatory protei 98.2 1.9E-05 6.4E-10 61.0 12.5 97 270-368 19-115 (142)
160 2kck_A TPR repeat; tetratricop 98.2 1.9E-05 6.6E-10 57.5 12.0 98 269-368 6-106 (112)
161 2fbn_A 70 kDa peptidylprolyl i 98.2 2.2E-05 7.4E-10 64.5 13.5 130 236-367 40-185 (198)
162 3q49_B STIP1 homology and U bo 98.2 4.8E-05 1.6E-09 58.0 14.4 95 270-366 10-104 (137)
163 4b4t_Q 26S proteasome regulato 98.2 8.2E-05 2.8E-09 69.1 18.5 194 113-332 11-244 (434)
164 3ro3_A PINS homolog, G-protein 98.2 8.9E-06 3.1E-10 63.8 10.2 132 271-402 11-157 (164)
165 3q49_B STIP1 homology and U bo 98.2 4.2E-05 1.4E-09 58.3 13.7 100 302-403 7-106 (137)
166 2xcb_A PCRH, regulatory protei 98.2 2.3E-05 8E-10 60.5 12.2 96 236-333 20-115 (142)
167 3sz7_A HSC70 cochaperone (SGT) 98.2 4E-05 1.4E-09 60.8 13.9 99 268-368 10-108 (164)
168 3sz7_A HSC70 cochaperone (SGT) 98.2 4.1E-05 1.4E-09 60.7 13.6 100 233-334 10-109 (164)
169 2dba_A Smooth muscle cell asso 98.2 7.8E-05 2.7E-09 57.5 14.9 95 305-402 29-127 (148)
170 1elr_A TPR2A-domain of HOP; HO 98.2 2E-05 6.8E-10 59.3 10.8 96 236-332 6-107 (131)
171 2dba_A Smooth muscle cell asso 98.2 0.0001 3.6E-09 56.7 15.2 98 233-333 27-128 (148)
172 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.5E-10 62.3 10.3 133 235-367 10-157 (164)
173 3dss_A Geranylgeranyl transfer 98.1 0.0046 1.6E-07 54.7 25.9 227 150-403 41-304 (331)
174 1wao_1 Serine/threonine protei 98.1 1.7E-05 5.9E-10 74.9 10.4 121 205-328 12-134 (477)
175 1wao_1 Serine/threonine protei 98.0 1.6E-05 5.4E-10 75.2 9.9 116 280-398 17-134 (477)
176 1hxi_A PEX5, peroxisome target 98.0 4.9E-05 1.7E-09 56.9 10.7 88 312-401 25-112 (121)
177 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 6.1E-05 2.1E-09 70.8 13.7 88 305-394 318-405 (457)
178 3dss_A Geranylgeranyl transfer 98.0 0.0012 4.1E-08 58.4 21.0 193 210-409 40-271 (331)
179 1hxi_A PEX5, peroxisome target 98.0 5.3E-05 1.8E-09 56.6 10.8 97 270-368 18-114 (121)
180 2xev_A YBGF; tetratricopeptide 98.0 0.00017 5.8E-09 54.2 13.8 91 275-367 8-104 (129)
181 1dce_A Protein (RAB geranylger 98.0 0.00049 1.7E-08 66.3 19.5 171 250-425 45-242 (567)
182 3k9i_A BH0479 protein; putativ 98.0 1.6E-05 5.6E-10 59.0 7.3 85 282-367 3-89 (117)
183 2xev_A YBGF; tetratricopeptide 98.0 0.00042 1.4E-08 51.9 14.8 92 310-403 8-105 (129)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 9.5E-05 3.2E-09 69.4 13.3 132 234-367 268-414 (457)
185 3n71_A Histone lysine methyltr 98.0 3.4E-05 1.2E-09 72.6 10.1 126 278-403 318-464 (490)
186 3k9i_A BH0479 protein; putativ 97.9 2.6E-05 8.9E-10 57.9 7.5 86 247-333 3-90 (117)
187 3rkv_A Putative peptidylprolyl 97.9 0.0002 6.8E-09 56.5 12.8 98 270-368 12-126 (162)
188 1ihg_A Cyclophilin 40; ppiase 97.9 0.00011 3.9E-09 66.7 12.6 90 304-395 273-362 (370)
189 1klx_A Cysteine rich protein B 97.9 0.00072 2.5E-08 51.7 14.6 112 283-405 9-128 (138)
190 1ihg_A Cyclophilin 40; ppiase 97.9 0.00016 5.5E-09 65.7 12.6 123 236-360 225-362 (370)
191 3rkv_A Putative peptidylprolyl 97.8 0.00027 9.2E-09 55.7 12.3 100 233-333 10-126 (162)
192 3n71_A Histone lysine methyltr 97.8 0.00012 4.2E-09 68.8 11.1 132 147-297 318-463 (490)
193 1dce_A Protein (RAB geranylger 97.8 0.00097 3.3E-08 64.2 17.0 174 214-392 44-244 (567)
194 2if4_A ATFKBP42; FKBP-like, al 97.8 0.0001 3.5E-09 66.2 9.5 149 234-403 179-328 (338)
195 2hr2_A Hypothetical protein; a 97.7 0.00027 9.3E-09 54.9 10.3 94 108-201 13-130 (159)
196 2hr2_A Hypothetical protein; a 97.7 0.0012 4.1E-08 51.3 13.8 62 341-402 59-130 (159)
197 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00011 3.7E-09 66.0 9.2 149 198-368 178-328 (338)
198 1klx_A Cysteine rich protein B 97.7 0.0007 2.4E-08 51.8 12.0 109 214-333 10-126 (138)
199 2l6j_A TPR repeat-containing p 97.5 0.0011 3.7E-08 48.0 10.8 89 303-394 3-98 (111)
200 2l6j_A TPR repeat-containing p 97.4 0.00014 4.9E-09 52.8 4.8 65 268-333 3-67 (111)
201 2kat_A Uncharacterized protein 97.4 0.00087 3E-08 49.1 8.9 62 269-331 19-80 (115)
202 2kat_A Uncharacterized protein 97.4 0.0015 5.1E-08 47.8 9.9 80 287-368 3-82 (115)
203 1na3_A Designed protein CTPR2; 97.3 0.0032 1.1E-07 43.4 10.8 61 341-402 11-71 (91)
204 1na3_A Designed protein CTPR2; 97.3 0.0023 7.9E-08 44.2 10.1 25 307-331 46-70 (91)
205 3ma5_A Tetratricopeptide repea 97.2 0.002 7E-08 45.9 8.7 64 303-367 6-69 (100)
206 1zu2_A Mitochondrial import re 97.2 0.0011 3.6E-08 51.5 7.4 98 280-381 13-131 (158)
207 1zu2_A Mitochondrial import re 97.2 0.00096 3.3E-08 51.7 7.1 99 245-347 13-132 (158)
208 3ma5_A Tetratricopeptide repea 97.1 0.0034 1.2E-07 44.7 8.8 64 137-201 6-69 (100)
209 3qww_A SET and MYND domain-con 97.0 0.0017 5.8E-08 60.0 8.4 87 316-402 310-410 (433)
210 3qwp_A SET and MYND domain-con 97.0 0.0025 8.7E-08 58.9 9.0 92 311-402 294-399 (429)
211 3ly7_A Transcriptional activat 96.9 0.022 7.6E-07 50.7 14.0 73 336-412 274-346 (372)
212 3qww_A SET and MYND domain-con 96.8 0.0047 1.6E-07 57.1 9.0 94 150-262 310-410 (433)
213 3qwp_A SET and MYND domain-con 96.7 0.0056 1.9E-07 56.6 9.0 92 276-367 294-399 (429)
214 3mkq_B Coatomer subunit alpha; 96.7 0.038 1.3E-06 43.4 12.3 100 148-259 15-114 (177)
215 3mkq_A Coatomer beta'-subunit; 96.5 0.036 1.2E-06 55.8 14.6 115 114-259 660-774 (814)
216 3mkq_A Coatomer beta'-subunit; 96.4 0.02 7E-07 57.6 12.1 130 108-258 631-760 (814)
217 2kc7_A BFR218_protein; tetratr 96.3 0.013 4.3E-07 41.2 6.8 52 280-332 11-63 (99)
218 3u64_A Protein TP_0956; tetrat 96.2 0.27 9.2E-06 42.1 15.7 83 252-336 181-272 (301)
219 1wy6_A Hypothetical protein ST 96.2 0.24 8.1E-06 36.7 13.9 139 149-300 18-156 (172)
220 3ly7_A Transcriptional activat 96.2 0.63 2.2E-05 41.4 19.9 48 135-183 191-243 (372)
221 1wy6_A Hypothetical protein ST 96.0 0.32 1.1E-05 36.1 13.1 140 245-406 18-157 (172)
222 3mkq_B Coatomer subunit alpha; 96.0 0.43 1.5E-05 37.4 17.2 55 72-133 7-61 (177)
223 1pc2_A Mitochondria fission pr 95.9 0.13 4.4E-06 39.3 11.2 82 285-368 14-100 (152)
224 2kc7_A BFR218_protein; tetratr 95.9 0.083 2.8E-06 36.8 9.7 58 310-368 6-64 (99)
225 3bee_A Putative YFRE protein; 95.7 0.12 4.3E-06 35.9 9.7 65 303-368 5-72 (93)
226 3bee_A Putative YFRE protein; 95.4 0.16 5.3E-06 35.3 9.3 48 285-333 25-72 (93)
227 1pc2_A Mitochondria fission pr 95.3 0.32 1.1E-05 37.2 11.4 80 321-402 15-99 (152)
228 3u64_A Protein TP_0956; tetrat 95.3 0.19 6.4E-06 43.0 11.0 92 285-378 179-281 (301)
229 4h7y_A Dual specificity protei 95.1 0.34 1.2E-05 36.7 10.6 53 353-406 74-126 (161)
230 2v5f_A Prolyl 4-hydroxylase su 94.8 0.25 8.6E-06 35.0 9.3 62 236-297 7-74 (104)
231 2v5f_A Prolyl 4-hydroxylase su 94.4 0.46 1.6E-05 33.6 9.8 28 340-367 47-74 (104)
232 4h7y_A Dual specificity protei 94.4 0.49 1.7E-05 35.8 9.9 102 233-336 12-126 (161)
233 2ff4_A Probable regulatory pro 94.4 0.84 2.9E-05 41.3 13.7 69 237-306 174-247 (388)
234 1nzn_A CGI-135 protein, fissio 93.5 0.48 1.6E-05 34.8 8.3 22 381-402 81-102 (126)
235 1v54_E Cytochrome C oxidase po 92.9 1.6 5.6E-05 30.3 9.7 63 319-382 25-87 (109)
236 3lvg_A Clathrin heavy chain 1; 92.8 0.0075 2.6E-07 55.2 -2.6 204 104-327 81-285 (624)
237 4gns_B Protein CSD3, chitin bi 92.8 0.72 2.5E-05 45.4 10.9 54 347-401 345-398 (754)
238 2ff4_A Probable regulatory pro 92.7 0.56 1.9E-05 42.5 9.5 69 306-375 173-246 (388)
239 4ady_A RPN2, 26S proteasome re 92.6 9.7 0.00033 38.5 24.6 298 117-424 385-721 (963)
240 4b4t_P 26S proteasome regulato 92.5 6.4 0.00022 36.3 18.7 57 274-330 142-203 (445)
241 4b4t_P 26S proteasome regulato 92.4 6.6 0.00023 36.2 17.5 95 238-332 141-246 (445)
242 1v54_E Cytochrome C oxidase po 92.3 1.9 6.4E-05 30.0 9.2 48 285-332 26-73 (109)
243 4ady_A RPN2, 26S proteasome re 91.9 12 0.0004 37.9 21.2 154 244-402 500-657 (963)
244 1nzn_A CGI-135 protein, fissio 91.6 1.1 3.6E-05 33.0 8.0 84 283-368 15-103 (126)
245 4fhn_B Nucleoporin NUP120; pro 91.2 8.2 0.00028 40.5 17.4 81 237-319 902-986 (1139)
246 2y69_E Cytochrome C oxidase su 90.9 3.4 0.00012 30.5 9.8 62 320-382 69-130 (152)
247 2y69_E Cytochrome C oxidase su 89.7 3.8 0.00013 30.3 9.2 62 284-346 68-129 (152)
248 3lvg_A Clathrin heavy chain 1; 89.6 0.74 2.5E-05 42.5 6.8 205 76-289 89-324 (624)
249 4gns_B Protein CSD3, chitin bi 89.5 2 7E-05 42.3 10.3 128 237-366 251-398 (754)
250 4fhn_B Nucleoporin NUP120; pro 88.8 16 0.00056 38.2 17.3 116 80-201 822-966 (1139)
251 3lpz_A GET4 (YOR164C homolog); 87.3 14 0.00049 32.2 19.7 101 110-222 39-159 (336)
252 3o48_A Mitochondria fission 1 86.6 6.5 0.00022 29.0 9.0 68 301-368 37-107 (134)
253 2wpv_A GET4, UPF0363 protein Y 85.4 17 0.0006 31.4 18.3 167 175-366 35-215 (312)
254 1wdy_A 2-5A-dependent ribonucl 85.3 10 0.00036 31.7 11.6 19 113-131 9-27 (285)
255 1qsa_A Protein (soluble lytic 83.8 32 0.0011 33.1 27.5 98 91-191 57-154 (618)
256 1y8m_A FIS1; mitochondria, unk 83.3 12 0.00042 27.9 10.9 67 302-368 37-106 (144)
257 1qsa_A Protein (soluble lytic 82.4 36 0.0012 32.7 19.1 199 83-294 227-438 (618)
258 4b4t_R RPN7, 26S proteasome re 81.7 15 0.00051 33.6 11.6 99 270-368 132-237 (429)
259 1zbp_A Hypothetical protein VP 81.4 23 0.00079 29.8 12.3 115 208-333 6-129 (273)
260 4b4t_R RPN7, 26S proteasome re 80.5 12 0.0004 34.3 10.4 111 235-345 132-249 (429)
261 2wpv_A GET4, UPF0363 protein Y 79.1 31 0.0011 29.8 18.1 65 111-187 38-106 (312)
262 3txn_A 26S proteasome regulato 79.1 36 0.0012 30.6 22.4 95 106-201 19-127 (394)
263 3ffl_A Anaphase-promoting comp 78.5 5.4 0.00019 30.7 6.2 69 133-201 13-91 (167)
264 3o48_A Mitochondria fission 1 78.3 18 0.00061 26.7 10.0 47 356-402 60-106 (134)
265 3kea_A K1L; tropism, ANK repea 78.2 22 0.00076 30.1 11.0 63 274-341 163-225 (285)
266 3lpz_A GET4 (YOR164C homolog); 76.5 38 0.0013 29.6 20.8 167 176-367 38-215 (336)
267 3esl_A Checkpoint serine/threo 76.3 27 0.00093 27.9 9.8 55 318-372 93-148 (202)
268 1k1a_A B-cell lymphoma 3-encod 75.4 24 0.00082 28.6 10.2 184 206-408 13-210 (241)
269 4aez_C MAD3, mitotic spindle c 74.9 27 0.00091 28.4 9.6 70 102-171 113-183 (223)
270 3eiq_C Programmed cell death p 74.8 45 0.0015 29.5 12.1 64 342-406 220-285 (358)
271 4a1g_A Mitotic checkpoint seri 74.5 26 0.00088 26.6 9.0 71 102-172 64-135 (152)
272 3eiq_C Programmed cell death p 74.3 46 0.0016 29.4 14.1 69 271-340 219-289 (358)
273 2uwj_G Type III export protein 73.3 20 0.00069 24.8 7.2 79 318-404 20-98 (115)
274 2p58_C Putative type III secre 73.0 21 0.00071 24.8 8.0 79 318-404 21-99 (116)
275 3eu9_A Huntingtin-interacting 71.3 31 0.0011 27.7 10.0 15 350-364 218-232 (240)
276 1wdy_A 2-5A-dependent ribonucl 70.6 17 0.00059 30.3 8.4 241 143-408 7-280 (285)
277 3ffl_A Anaphase-promoting comp 69.2 37 0.0013 26.1 9.5 23 308-330 67-89 (167)
278 1y8m_A FIS1; mitochondria, unk 68.9 34 0.0012 25.6 11.3 68 231-298 36-106 (144)
279 2wvi_A Mitotic checkpoint seri 68.0 28 0.00095 26.8 7.9 72 102-173 59-131 (164)
280 3txn_A 26S proteasome regulato 67.9 69 0.0023 28.8 20.0 233 174-410 20-290 (394)
281 3eu9_A Huntingtin-interacting 66.6 24 0.00083 28.4 8.2 54 346-403 181-236 (240)
282 3hra_A Ankyrin repeat family p 65.6 34 0.0012 26.7 8.8 19 115-133 11-29 (201)
283 2uwj_G Type III export protein 65.1 32 0.0011 23.9 8.2 86 83-176 19-105 (115)
284 2fu4_A Ferric uptake regulatio 64.9 16 0.00055 24.0 5.6 60 365-425 8-68 (83)
285 3kea_A K1L; tropism, ANK repea 64.8 27 0.00093 29.5 8.4 179 180-376 35-225 (285)
286 2p58_C Putative type III secre 64.3 33 0.0011 23.8 8.9 86 83-176 20-106 (116)
287 3jxi_A Vanilloid receptor-rela 62.6 12 0.0004 31.1 5.6 27 146-172 10-36 (260)
288 2xig_A Ferric uptake regulatio 62.6 25 0.00087 26.5 6.9 62 363-425 16-77 (150)
289 1n11_A Ankyrin; clathrin, BAND 61.1 86 0.0029 28.2 11.6 284 91-409 28-339 (437)
290 3jxi_A Vanilloid receptor-rela 60.4 7.4 0.00025 32.4 3.9 185 208-403 11-251 (260)
291 1bpo_A Protein (clathrin); cla 59.8 1.1E+02 0.0036 28.2 11.9 93 72-168 331-425 (494)
292 2fe3_A Peroxide operon regulat 59.5 26 0.00088 26.2 6.4 61 364-425 12-72 (145)
293 4a1g_A Mitotic checkpoint seri 58.2 58 0.002 24.6 9.6 51 358-408 84-135 (152)
294 2d2s_A Exocyst complex compone 57.7 78 0.0027 26.0 9.5 90 275-367 24-119 (235)
295 3hra_A Ankyrin repeat family p 55.8 30 0.001 27.0 6.7 15 359-373 158-172 (201)
296 1mzb_A Ferric uptake regulatio 55.3 25 0.00087 25.9 5.7 60 365-425 9-69 (136)
297 1n11_A Ankyrin; clathrin, BAND 55.0 1.2E+02 0.004 27.2 12.0 262 112-409 83-372 (437)
298 3esl_A Checkpoint serine/threo 54.8 80 0.0027 25.2 9.1 53 250-302 95-148 (202)
299 1zbp_A Hypothetical protein VP 53.7 99 0.0034 26.0 12.7 16 247-262 113-128 (273)
300 4g8k_A 2-5A-dependent ribonucl 53.2 1.1E+02 0.0037 26.3 14.9 148 243-409 174-329 (337)
301 3mwm_A ZUR, putative metal upt 52.1 15 0.00052 27.3 4.0 47 379-425 18-64 (139)
302 4ets_A Ferric uptake regulatio 52.0 43 0.0015 25.6 6.6 66 123-189 18-85 (162)
303 4g8k_A 2-5A-dependent ribonucl 51.2 98 0.0034 26.5 9.9 49 245-304 281-329 (337)
304 3eyy_A Putative iron uptake re 50.9 25 0.00084 26.4 5.0 60 364-425 9-68 (145)
305 2o03_A Probable zinc uptake re 50.9 17 0.00058 26.7 4.0 47 379-425 15-61 (131)
306 2w57_A Ferric uptake regulatio 49.9 29 0.001 26.1 5.3 60 365-425 8-68 (150)
307 1k1a_A B-cell lymphoma 3-encod 49.3 87 0.003 25.0 8.8 13 117-129 17-29 (241)
308 1ug3_A EIF4GI, eukaryotic prot 49.2 51 0.0017 28.9 7.5 26 236-261 13-38 (339)
309 2ion_A PDCD4, programmed cell 48.5 85 0.0029 23.7 8.3 64 272-336 12-77 (152)
310 2qx5_A Nucleoporin NIC96; mRNA 48.0 2E+02 0.0069 27.9 11.9 266 111-398 157-467 (661)
311 1bpo_A Protein (clathrin); cla 47.2 1.7E+02 0.0059 26.8 10.5 84 118-202 341-424 (494)
312 3aji_A 26S proteasome non-ATPa 46.8 93 0.0032 24.7 8.5 19 180-198 10-28 (231)
313 3b7b_A Euchromatic histone-lys 46.5 75 0.0026 25.4 7.9 19 349-367 217-235 (237)
314 2ijq_A Hypothetical protein; s 46.1 97 0.0033 23.7 8.2 60 342-402 36-103 (161)
315 2nsz_A Programmed cell death p 45.7 85 0.0029 22.8 9.7 64 272-336 10-75 (129)
316 4ets_A Ferric uptake regulatio 45.7 40 0.0014 25.8 5.5 59 366-425 25-85 (162)
317 2d2s_A Exocyst complex compone 45.4 1E+02 0.0036 25.2 8.3 92 239-333 23-120 (235)
318 2zu6_B Programmed cell death p 45.2 1.5E+02 0.0051 25.5 11.7 195 204-407 8-235 (307)
319 2fe3_A Peroxide operon regulat 44.7 83 0.0028 23.4 7.1 67 122-189 6-72 (145)
320 2nsz_A Programmed cell death p 44.1 90 0.0031 22.7 8.3 64 306-370 9-74 (129)
321 2ion_A PDCD4, programmed cell 43.1 86 0.0029 23.6 6.9 64 306-370 11-76 (152)
322 2r9g_A AAA ATPase, central reg 42.4 1.3E+02 0.0044 23.9 9.9 54 317-371 27-85 (204)
323 3bu8_A Telomeric repeat-bindin 42.3 1.1E+02 0.0036 24.7 7.3 18 114-131 122-139 (235)
324 4b4t_S RPN3, 26S proteasome re 42.1 82 0.0028 29.4 7.8 14 321-334 417-430 (523)
325 2b7e_A PRE-mRNA processing pro 41.7 24 0.00082 21.7 2.8 34 154-187 2-36 (59)
326 3t8k_A Uncharacterized protein 41.2 1.2E+02 0.0042 23.4 9.9 94 280-373 46-148 (186)
327 3eyy_A Putative iron uptake re 41.0 85 0.0029 23.3 6.6 64 124-189 5-68 (145)
328 3b7b_A Euchromatic histone-lys 39.5 68 0.0023 25.7 6.5 53 347-403 182-236 (237)
329 3pvs_A Replication-associated 39.4 2.2E+02 0.0076 25.9 14.3 142 214-371 166-327 (447)
330 3ljn_A Hypothetical protein; a 39.4 1.9E+02 0.0064 25.0 11.2 17 115-131 26-42 (364)
331 3bge_A Predicted ATPase; struc 39.3 1.4E+02 0.0049 23.6 8.7 37 317-353 20-56 (201)
332 2rfa_A Transient receptor pote 39.3 1.2E+02 0.0043 23.9 8.1 87 311-402 125-222 (232)
333 2rfa_A Transient receptor pote 36.2 1.6E+02 0.0055 23.3 8.9 56 276-332 158-222 (232)
334 3pvs_A Replication-associated 36.0 2.5E+02 0.0086 25.5 13.8 55 281-335 267-326 (447)
335 3kae_A CDC27, possible protein 35.3 1.6E+02 0.0054 22.9 7.2 53 348-400 71-140 (242)
336 2xig_A Ferric uptake regulatio 35.2 1.4E+02 0.0048 22.3 7.5 39 242-280 34-72 (150)
337 2zu6_B Programmed cell death p 34.8 2.2E+02 0.0075 24.4 13.7 70 236-306 168-239 (307)
338 3ctd_A Putative ATPase, AAA fa 34.5 1.8E+02 0.0061 23.3 9.0 22 282-303 48-69 (213)
339 3ljn_A Hypothetical protein; a 33.9 2.1E+02 0.0072 24.7 9.3 46 349-399 218-266 (364)
340 4b4t_S RPN3, 26S proteasome re 33.5 1.4E+02 0.0049 27.8 8.0 65 234-298 231-299 (523)
341 2wvi_A Mitotic checkpoint seri 33.0 1.6E+02 0.0056 22.5 10.2 103 90-204 23-127 (164)
342 3t8k_A Uncharacterized protein 33.0 1.7E+02 0.0057 22.6 10.7 23 245-267 46-68 (186)
343 2o03_A Probable zinc uptake re 32.8 72 0.0025 23.2 5.0 43 276-318 17-59 (131)
344 1mzb_A Ferric uptake regulatio 32.5 1.4E+02 0.0049 21.7 6.7 32 249-280 33-64 (136)
345 3mv2_A Coatomer subunit alpha; 31.9 2.5E+02 0.0086 24.3 9.0 133 145-287 121-260 (325)
346 1s3q_A Ferritin; ferroxidase, 31.5 1.6E+02 0.0054 22.6 7.0 50 172-233 22-71 (173)
347 3l6a_A Eukaryotic translation 31.1 2.8E+02 0.0094 24.5 13.5 21 205-225 18-38 (364)
348 3mwm_A ZUR, putative metal upt 30.9 66 0.0023 23.7 4.5 43 276-318 20-62 (139)
349 1ug3_A EIF4GI, eukaryotic prot 30.8 2E+02 0.0068 25.1 8.3 146 203-364 15-166 (339)
350 3l6a_A Eukaryotic translation 30.2 79 0.0027 28.0 5.6 66 236-301 14-80 (364)
351 2fu4_A Ferric uptake regulatio 30.0 1.1E+02 0.0039 19.7 6.8 62 126-188 5-67 (83)
352 3c1d_A Protein ORAA, regulator 29.8 1.8E+02 0.0062 21.9 11.3 51 285-337 46-96 (159)
353 4fke_A Aminopeptidase N; zinc 29.7 4.6E+02 0.016 26.6 17.8 158 238-402 690-859 (909)
354 2etb_A Transient receptor pote 29.7 1E+02 0.0035 25.1 6.1 22 244-265 9-30 (256)
355 2w57_A Ferric uptake regulatio 29.5 1.6E+02 0.0055 21.9 6.5 35 249-283 32-66 (150)
356 3f3f_C Nucleoporin NUP85; stru 27.4 2.1E+02 0.0073 27.0 8.0 85 237-323 482-568 (570)
357 2r9g_A AAA ATPase, central reg 26.7 2.4E+02 0.0082 22.4 8.9 17 213-229 28-44 (204)
358 1bd8_A P19INK4D CDK4/6 inhibit 26.7 91 0.0031 22.8 4.9 16 244-259 9-24 (156)
359 2keb_A DNA polymerase subunit 26.6 1.6E+02 0.0054 20.3 6.3 31 358-388 28-58 (101)
360 2ijq_A Hypothetical protein; s 25.9 2.2E+02 0.0075 21.7 7.6 51 282-332 45-103 (161)
361 4fke_A Aminopeptidase N; zinc 25.6 5.4E+02 0.018 26.1 16.7 56 142-199 690-752 (909)
362 4aez_C MAD3, mitotic spindle c 25.4 2.7E+02 0.0093 22.5 9.0 51 154-204 130-181 (223)
363 2keb_A DNA polymerase subunit 25.0 1.7E+02 0.0058 20.1 5.8 31 288-318 28-58 (101)
364 1krq_A Ferritin; H-chain like 24.9 1.1E+02 0.0038 23.3 5.0 19 215-233 51-69 (167)
365 4gq2_M Nucleoporin NUP120; bet 23.3 6E+02 0.021 25.8 12.2 109 310-423 816-950 (950)
366 3bge_A Predicted ATPase; struc 22.8 2.9E+02 0.0098 21.9 7.8 20 248-267 21-40 (201)
367 1eum_A Ferritin 1; ECFTNA, met 21.5 2.7E+02 0.0091 21.0 7.7 19 215-233 51-69 (165)
368 2pnn_A Transient receptor pote 21.1 2.4E+02 0.0083 23.0 6.9 51 244-294 20-79 (273)
369 2etb_A Transient receptor pote 20.1 1.8E+02 0.0061 23.5 5.8 93 276-374 6-118 (256)
370 3ygs_P Procaspase 9; apoptosis 20.0 1.9E+02 0.0065 19.6 4.9 33 249-285 52-84 (97)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=8.4e-35 Score=276.22 Aligned_cols=206 Identities=12% Similarity=0.155 Sum_probs=182.8
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---------hH
Q 045814 217 EGYELLRQVLEDGLVPEN-TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK---------RL 286 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~ 286 (427)
.+..+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..||+.||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 445566677766665443 46888999999999999999999999999999999999999999987765 68
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 045814 367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422 (427)
Q Consensus 367 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 422 (427)
+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999875
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=1.3e-32 Score=261.25 Aligned_cols=207 Identities=14% Similarity=0.191 Sum_probs=175.2
Q ss_pred hHHHHHHHHHHhcCCCcCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 045814 155 EEAFCAFSKLKEMGVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 233 (427)
..+..+..++.+.+..+.+. .++.+ +.+|++.|++++|+++|++|.+.|+.||
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~--------------------------id~c~k~G~~~~A~~lf~~M~~~Gv~pd 60 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQK--------------------------LDMCSKKGDVLEALRLYDEARRNGVQLS 60 (501)
T ss_dssp -----------------CHHHHHHHH--------------------------HHHTTTSCCHHHHHHHHHHHHHHTCCCC
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHH--------------------------HHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 34555666777666654433 34444 4555667777777788888888999999
Q ss_pred HHHHHHHHHHHHccCC---------hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 045814 234 NTAFNKLISRFCEKKN---------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 304 (427)
..|||+||.+|++.+. ++.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 61 ~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 140 (501)
T 4g26_A 61 QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL 140 (501)
T ss_dssp HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999987665 6789999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 384 (427)
.+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|
T Consensus 141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F 220 (501)
T 4g26_A 141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF 220 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc
Q 045814 385 CLH 387 (427)
Q Consensus 385 ~~~ 387 (427)
+..
T Consensus 221 ~s~ 223 (501)
T 4g26_A 221 KSE 223 (501)
T ss_dssp HSH
T ss_pred hcC
Confidence 864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.4e-30 Score=252.37 Aligned_cols=344 Identities=8% Similarity=-0.024 Sum_probs=286.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-----------------CC
Q 045814 75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-----------------SP 136 (427)
Q Consensus 75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-----------------~~ 136 (427)
.+...+...+++..|+.+|+.+.. ..++..+++.++.+|.+.|++++|.++|++. +. .+
T Consensus 122 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (597)
T 2xpi_A 122 WLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL 198 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence 344566778999999999998853 3688999999999999999999999999963 21 12
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----------------------------------------------
Q 045814 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV----------------------------------------------- 169 (427)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~----------------------------------------------- 169 (427)
+..+|+.++.+|.+.|++++|.++|++|.+.+.
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 478999999999999999999999999876542
Q ss_pred -----------------------CcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHH
Q 045814 170 -----------------------FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEG 218 (427)
Q Consensus 170 -----------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a 218 (427)
.++..+++.++.+|.+.|++++|..+|+++.+.+ .++.++.+.|++++|
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 358 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHH
Confidence 1566778888888888888888888888887643 377788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
.++++++..... .+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 359 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 359 YLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 888888876543 377888899999999999999999999988764 235778999999999999999999999999877
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-
Q 045814 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET- 373 (427)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~- 373 (427)
+.. +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+
T Consensus 437 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 437 FQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp TTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred Ccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 543 77889999999999999999999999998764 336788999999999999999999999998775 66777
Q ss_pred -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 374 -TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 374 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|+++
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~ 567 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPG 567 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence 6789999999999999999999999988865 337889999999999999875
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.2e-30 Score=254.49 Aligned_cols=340 Identities=10% Similarity=-0.033 Sum_probs=260.1
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChhHH
Q 045814 79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A 157 (427)
.+.+.+++..|+.+|+.+.. ..|+..++..++.+|.+.|++++|..+|+++ ...++..+++.++.+|.+.|++++|
T Consensus 93 ~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 169 (597)
T 2xpi_A 93 DALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGA 169 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHH
Confidence 44567999999999999964 4688899999999999999999999999985 4578899999999999999999999
Q ss_pred HHHHHHHH-hc--------------CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch------------------
Q 045814 158 FCAFSKLK-EM--------------GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------------ 204 (427)
Q Consensus 158 ~~~~~~m~-~~--------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------ 204 (427)
.++|+++. .. |..++..+|+.++.+|.+.|++++|.++|+++.+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 249 (597)
T 2xpi_A 170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249 (597)
T ss_dssp HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHH
T ss_pred HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccch
Confidence 99999532 21 2344688999999999999999999999999876431
Q ss_pred ----------------------------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 045814 205 ----------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256 (427)
Q Consensus 205 ----------------------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 256 (427)
++..|.+.|++++|.++|+++... .++..+++.++.+|.+.|++++|.++
T Consensus 250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 327 (597)
T 2xpi_A 250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI 327 (597)
T ss_dssp HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHH
Confidence 033344555566666666655543 24555666666666666666666666
Q ss_pred HHHHhhCCC---------------------------------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814 257 LHTMVARNR---------------------------------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303 (427)
Q Consensus 257 ~~~m~~~~~---------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~ 303 (427)
|+++.+.+. +.+..+++.++..|.+.|++++|.++|+++.+.... +
T Consensus 328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~ 406 (597)
T 2xpi_A 328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-F 406 (597)
T ss_dssp HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-C
Confidence 665554321 234667777778888888888888888887765332 5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 383 (427)
..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 6688888888888888888888888887764 3367788888888888888888888888887753 3367888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCCCC
Q 045814 384 LCLHGRTDEAYHLFEEMAQK----GIFRD--VITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~ 426 (427)
|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|+++
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 533 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD 533 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence 88888888888888888776 66777 678888888888888765
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.9e-24 Score=200.70 Aligned_cols=366 Identities=14% Similarity=0.057 Sum_probs=303.1
Q ss_pred cccHHHHHHHHHHHhcCCCcchhhhhhhCCCCCCCChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHH
Q 045814 37 QQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL 116 (427)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~ 116 (427)
...+.+....+.+.+...|+....+ ..+..++...++.+.|..+++.+... .+.+..+|..+...+
T Consensus 12 ~g~~~~A~~~~~~~~~~~p~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~ 77 (388)
T 1w3b_A 12 AGDFEAAERHCMQLWRQEPDNTGVL------------LLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVY 77 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence 3455566665555555555433221 24455667789999999999988664 355788999999999
Q ss_pred HHcCChHHHHHHHHhc-CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHH
Q 045814 117 VEARAFKVAMDFLDST-GFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194 (427)
Q Consensus 117 ~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~ 194 (427)
.+.|++++|.+.|++. ...|+ ..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|..
T Consensus 78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999973 44454 568999999999999999999999999986533 56677888899999999999999
Q ss_pred HHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC
Q 045814 195 LYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA 266 (427)
Q Consensus 195 ~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 266 (427)
.|+++.+.. .+...+...|++++|...|+++...... +...|..+...+...|++++|...+++......
T Consensus 157 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 999988753 3778889999999999999999986544 677899999999999999999999999887743
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346 (427)
Q Consensus 267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 346 (427)
.+..++..+...|.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 25788999999999999999999999999987543 56789999999999999999999999999874 45788999999
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCC
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGK 424 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 424 (427)
..+...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+. .| +...|..+-..+.+.|+
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999998763 346789999999999999999999999999875 44 45677777777766653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.3e-24 Score=201.93 Aligned_cols=341 Identities=12% Similarity=0.015 Sum_probs=294.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChh
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIE 155 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~ 155 (427)
..+...++++.|++.+..+... .+.+...+..+...+...|++++|...++.. ..+.+..+|..+...|.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 3445689999999999988654 2345667778888889999999999999862 23456889999999999999999
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHH
Q 045814 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLE 227 (427)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~ 227 (427)
+|.+.|+++.+.... +..+|..+..++...|++++|...|+++.+.+ .+...+...|++++|.+.|+++..
T Consensus 85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 163 (388)
T 1w3b_A 85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163 (388)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999986433 56789999999999999999999999998764 367788889999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 307 (427)
.... +..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...|++..+.... +..++
T Consensus 164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 240 (388)
T 1w3b_A 164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH 240 (388)
T ss_dssp HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHH
Confidence 6543 678999999999999999999999999998753 35678999999999999999999999999876533 57889
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (427)
..+...+.+.|++++|...++++.+.+. .+..+|..+...+.+.|++++|.+.++++.+. .+.+..+|..+...+...
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~ 318 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence 9999999999999999999999998742 25678999999999999999999999999987 345788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814 388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427 (427)
Q Consensus 388 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e 427 (427)
|++++|.+.++++.+.. +.+..++..+...+.+.|++++
T Consensus 319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 99999999999998752 3357899999999999998763
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.3e-20 Score=176.51 Aligned_cols=342 Identities=10% Similarity=0.060 Sum_probs=267.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCC-CCHHhHHHHHHHHHhcCC
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFS-PNPNSLELYIQCLCESGL 153 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~li~~~~~~~~ 153 (427)
+...+...+++..|+.+|+.+... .+.+..++..+...+...|++++|...+++. ... .+..++..+..+|.+.|+
T Consensus 32 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 109 (450)
T 2y4t_A 32 LGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK 109 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 344566789999999999998764 3457889999999999999999999999873 223 357789999999999999
Q ss_pred hhHHHHHHHHHHhcCCCcCH---hhHHHH------------HHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHH
Q 045814 154 IEEAFCAFSKLKEMGVFGSI---KTWNSA------------LLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFC 210 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~ 210 (427)
+++|.+.|+++.+.... +. ..+..+ ...+...|++++|...|+.+.+.. .+...|.
T Consensus 110 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (450)
T 2y4t_A 110 LDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI 188 (450)
T ss_dssp HHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 99999999999886433 33 555555 444889999999999999988753 3788899
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHH------------HHH
Q 045814 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV------------ING 278 (427)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~ 278 (427)
..|++++|.+.|+++...... +..++..+...|...|++++|...++++...... +...+..+ ...
T Consensus 189 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~ 266 (450)
T 2y4t_A 189 KEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE 266 (450)
T ss_dssp HTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999876433 6789999999999999999999999999876422 34444444 788
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYVPD-----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
+.+.|++++|...|+++.+.. |+ ...|..+...+.+.|++++|...++++.+.. +.+..++..+..+|...|
T Consensus 267 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 343 (450)
T 2y4t_A 267 LIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE 343 (450)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence 999999999999999998753 34 3478888999999999999999999998763 336788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHH------------HHhcC-----CHHHHHHHHHHH-HHCC--CCCC-----
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAG------------LCLHG-----RTDEAYHLFEEM-AQKG--IFRD----- 408 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~~g--~~p~----- 408 (427)
++++|...++++.+... -+...+..+..+ |...| +.+++.+.|+++ .+.. ..|+
T Consensus 344 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~ 422 (450)
T 2y4t_A 344 MYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK 422 (450)
T ss_dssp CHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHH
Confidence 99999999999988532 245566666532 33344 567778888763 3321 1122
Q ss_pred --HhHHHHHHHHHHhcCCCC
Q 045814 409 --VITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 409 --~~~~~~li~~~~~~g~~~ 426 (427)
...+..+..+|...|+.+
T Consensus 423 ~a~~~~~~i~~ay~~L~d~~ 442 (450)
T 2y4t_A 423 KAEKKFIDIAAAKEVLSDPE 442 (450)
T ss_dssp HHHHHHHHHHHHHHHSSGGG
T ss_pred HHHHHHHHHHHHHHHhCCHH
Confidence 237788888888877654
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=8.8e-21 Score=179.43 Aligned_cols=305 Identities=11% Similarity=0.051 Sum_probs=258.6
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHhc-C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 045814 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST-G-FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180 (427)
Q Consensus 103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 180 (427)
+.+...+..+...+.+.|++++|..+|+++ . .+.+..+|..+..+|...|++++|...|+++.+.+.. +..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 346778899999999999999999999973 2 2446889999999999999999999999999987644 688999999
Q ss_pred HHHHHcCChhHHHHHHHHHHhcch-----------------------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 045814 181 LGCIKIDRTDLVWKLYHDLIESGY-----------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237 (427)
Q Consensus 181 ~~~~~~~~~~~a~~~~~~~~~~~~-----------------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 237 (427)
.+|.+.|++++|...|+.+.+.+. +...+...|++++|...++++...... +..++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence 999999999999999999976531 144588999999999999999986543 78899
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH-------
Q 045814 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV------- 310 (427)
Q Consensus 238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l------- 310 (427)
..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 346789999999999999999999999999876432 34445444
Q ss_pred -----HHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814 311 -----IHGLCKMGWLGDARKMWFEMIHKGLLPN-----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380 (427)
Q Consensus 311 -----i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 380 (427)
...|.+.|++++|...++++.+. .|+ ...+..+..++.+.|++++|...++++.+.. +.+...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78899999999999999999986 344 3478888999999999999999999998763 3368999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLI 416 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li 416 (427)
..+|...|++++|.+.++++.+. .|+ ...+..+-
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 99999999999999999999984 454 44454444
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-20 Score=178.56 Aligned_cols=341 Identities=11% Similarity=0.007 Sum_probs=259.0
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCCh
Q 045814 77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLI 154 (427)
Q Consensus 77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~ 154 (427)
...+...+++..|+..|+.+... .|+..+|..+..++.+.|++++|...+++. ...| +..+|..+..+|.+.|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 89 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF 89 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence 34555678889999999988764 378888988999999999999999988862 3334 467888888999999999
Q ss_pred hHHHHHHHHHHhcCCCcC--------------------------------------------------------------
Q 045814 155 EEAFCAFSKLKEMGVFGS-------------------------------------------------------------- 172 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~-------------------------------------------------------------- 172 (427)
++|...|+++.+.+...+
T Consensus 90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (514)
T 2gw1_A 90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG 169 (514)
T ss_dssp HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence 999999988876543110
Q ss_pred ----------------HhhHHHHHHHHHH---cCChhHHHHHHHHHHh-----c-----------------chhHHHHHh
Q 045814 173 ----------------IKTWNSALLGCIK---IDRTDLVWKLYHDLIE-----S-----------------GYLIQAFCN 211 (427)
Q Consensus 173 ----------------~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~-----------------~~l~~~~~~ 211 (427)
...+......+.. .|++++|...|+++.+ . ..+...+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (514)
T 2gw1_A 170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249 (514)
T ss_dssp TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence 2222223333333 7888899998888877 2 126677888
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
.|++++|...++++...... ..++..+...+...|++++|...++++.+... .+..++..+...|...|++++|...
T Consensus 250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 326 (514)
T 2gw1_A 250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKD 326 (514)
T ss_dssp SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 89999999999988876544 77888888888889999999999988887643 3566788888888889999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG 371 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 371 (427)
|+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++.+.+....
T Consensus 327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 404 (514)
T 2gw1_A 327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK 404 (514)
T ss_dssp HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 9888876544 56678888888888899999999988888763 225667888888888889999999888888764211
Q ss_pred -CC----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 372 -ET----TVTYNTLIAGLCL---HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 372 -p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
++ ...|..+...|.. .|++++|.+.++++.+.. +.+..++..+...|.+.|+++
T Consensus 405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence 11 3378888888888 888999999988888753 225677888888888888764
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.87 E-value=2.2e-18 Score=157.46 Aligned_cols=322 Identities=10% Similarity=0.013 Sum_probs=229.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChh
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIE 155 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~ 155 (427)
..+...+++..|+..|+.+... .+.+..++..+...+...|++++|...+++ ....| +...+..+..++...|+++
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 88 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD 88 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence 3444566777777777766543 233456666666667777777777777665 22233 4556666666777777777
Q ss_pred HHHHHHHHHHhcCCC--cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 045814 156 EAFCAFSKLKEMGVF--GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233 (427)
Q Consensus 156 ~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 233 (427)
+|...|+++.+.... .+...+..+..... + ...-.+...+...|++++|.+.++++...... +
T Consensus 89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~ 153 (359)
T 3ieg_A 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M-------QRLRSQALDAFDGADYTAAITFLDKILEVCVW-D 153 (359)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-c
Confidence 777777766654320 02222322221111 0 00111356778899999999999998876543 7
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-----
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT----- 308 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----- 308 (427)
...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~ 231 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV 231 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH
Confidence 7889999999999999999999999998874 346788999999999999999999999999876433 333333
Q ss_pred -------HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 045814 309 -------TVIHGLCKMGWLGDARKMWFEMIHKGLLPNE----YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY 377 (427)
Q Consensus 309 -------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 377 (427)
.+...+.+.|++++|...++++.+.... +. ..+..+..+|...|++++|...++...+.. +.+...|
T Consensus 232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 309 (359)
T 3ieg_A 232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL 309 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence 2366688999999999999999886422 22 234557788999999999999999998863 3378899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 045814 378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKE 422 (427)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 422 (427)
..+...|...|++++|.+.|++..+. .|+ ...+..+..+....
T Consensus 310 ~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 310 KDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999985 444 55666666655443
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.9e-19 Score=171.80 Aligned_cols=315 Identities=10% Similarity=-0.033 Sum_probs=263.2
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI 184 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 184 (427)
...+......+.+.|++++|...|++ ....|+..+|..+..+|.+.|++++|...|+++.+.+.. +..+|..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHH
Confidence 34566778889999999999999997 344589999999999999999999999999999987644 6789999999999
Q ss_pred HcCChhHHHHHHHHHHhcch------------------------------------------------------------
Q 045814 185 KIDRTDLVWKLYHDLIESGY------------------------------------------------------------ 204 (427)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~~~------------------------------------------------------------ 204 (427)
..|++++|...|+.+...+.
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 99999999999998865431
Q ss_pred ---------------------------hHHHHH---hcCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHH
Q 045814 205 ---------------------------LIQAFC---NDGKVSEGYELLRQVLE-----DGLV--------PENTAFNKLI 241 (427)
Q Consensus 205 ---------------------------l~~~~~---~~g~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~li 241 (427)
....+. +.|++++|...++++.. .... .+..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 011122 37999999999999988 3111 2356788889
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 321 (427)
..+...|++++|...++++.+.... ...+..+...|...|++++|...++++.+.... +...+..+...+...|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 321 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD 321 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence 9999999999999999999987544 888999999999999999999999999887543 6778999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+|...++++.+.... +..++..+...|...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++.
T Consensus 322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999987533 56788899999999999999999999998763 3367889999999999999999999999987
Q ss_pred HCCCC-CC----HhHHHHHHHHHHh---cCCCC
Q 045814 402 QKGIF-RD----VITYNTLIQGYCK---EGKIV 426 (427)
Q Consensus 402 ~~g~~-p~----~~~~~~li~~~~~---~g~~~ 426 (427)
+.... ++ ...+..+...+.+ .|+++
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 432 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFI 432 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence 75221 11 3388888888888 77654
No 12
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=5.4e-18 Score=153.05 Aligned_cols=291 Identities=15% Similarity=0.069 Sum_probs=203.1
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH
Q 045814 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA 179 (427)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 179 (427)
...+...+..+...+...|++++|.+++++. .. +.+...+..++.++...|++++|...++++.+.... +...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 4556667777777777778888888877762 22 234456666777777778888888888877765433 45566665
Q ss_pred HHHHHHcC-ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814 180 LLGCIKID-RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258 (427)
Q Consensus 180 l~~~~~~~-~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 258 (427)
...+...| ++++| .+.+++....... +...|..+...+...|++++|...++
T Consensus 97 ~~~~~~~~~~~~~A--------------------------~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 149 (330)
T 3hym_B 97 GCYYLMVGHKNEHA--------------------------RRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYF 149 (330)
T ss_dssp HHHHHHSCSCHHHH--------------------------HHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhhhhHHHH--------------------------HHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 55555555 45444 4455554443322 45677788888888888888888888
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----
Q 045814 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG---- 334 (427)
Q Consensus 259 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---- 334 (427)
++.+.... +...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..
T Consensus 150 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 227 (330)
T 3hym_B 150 TAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG 227 (330)
T ss_dssp HHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence 88776432 3456666888888888888888888888776543 56778888888888888888888888877642
Q ss_pred ----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 045814 335 ----LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DV 409 (427)
Q Consensus 335 ----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~ 409 (427)
...+..++..+..+|...|++++|...+++..+.. +.+...|..+...|...|++++|.+.|++..+. .| +.
T Consensus 228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 304 (330)
T 3hym_B 228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDT 304 (330)
T ss_dssp CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCH
T ss_pred ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCch
Confidence 12335677888888888888888888888887763 235677888888888888888888888887764 34 45
Q ss_pred hHHHHHHHHH-HhcCCC
Q 045814 410 ITYNTLIQGY-CKEGKI 425 (427)
Q Consensus 410 ~~~~~li~~~-~~~g~~ 425 (427)
..+..+..++ ...|+.
T Consensus 305 ~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 305 FSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHHHhCch
Confidence 6666666666 345543
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=6.2e-18 Score=163.49 Aligned_cols=224 Identities=13% Similarity=0.032 Sum_probs=109.2
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcc-------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 045814 176 WNSALLGCIKIDRTDLVWKLYHDLIESG-------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248 (427)
Q Consensus 176 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 248 (427)
+..+...+...|++++|...|+.+.+.. .+...+...|++++|.+.++++...... +..++..+...+...|
T Consensus 246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcC
Confidence 4444444555555555555555554432 1344444555555555555555543322 3445555555555555
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
++++|...+++..+.... +...+..+...|...|++++|...|+++.+.... +...+..+...+...|++++|...++
T Consensus 325 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp CHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555555555544321 2344555555555555555555555555444321 33455555555555555555555555
Q ss_pred HHHHcCCC-----CCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814 329 EMIHKGLL-----PNEYTYNSMIHGYCRI----------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 329 ~m~~~~~~-----p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (427)
++.+.... .....+......+... |++++|...++...+.. +.+...+..+...|...|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 55433100 0011122223344444 55555555555555432 12344555555555555555555
Q ss_pred HHHHHHHHHC
Q 045814 394 YHLFEEMAQK 403 (427)
Q Consensus 394 ~~~~~~m~~~ 403 (427)
.+.|++..+.
T Consensus 482 ~~~~~~al~~ 491 (537)
T 3fp2_A 482 IELFEDSAIL 491 (537)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 5555555543
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.83 E-value=8.8e-17 Score=146.72 Aligned_cols=276 Identities=9% Similarity=-0.011 Sum_probs=203.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC----CHHhHHHH------
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP----NPNSLELY------ 144 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~----~~~~~~~l------ 144 (427)
+..++...+++..|+..|+.+... .+.+...+..+...+...|++++|...+++ ....| +...+..+
T Consensus 43 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 120 (359)
T 3ieg_A 43 RATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120 (359)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence 345566789999999999998764 233678999999999999999999999998 45566 34455554
Q ss_pred ------HHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814 145 ------IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218 (427)
Q Consensus 145 ------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a 218 (427)
...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...
T Consensus 121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~----------------------- 176 (359)
T 3ieg_A 121 QRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISD----------------------- 176 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHH-----------------------
Confidence 47788889999999999888876443 566666666666555555555544
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHH------------HHHHHHHhcCChH
Q 045814 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE------------EVINGLCKSRKRL 286 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~~~~~ 286 (427)
++++..... .+..++..+...+...|++++|...+++..+.... +...+. .+...+.+.|+++
T Consensus 177 ---~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 251 (359)
T 3ieg_A 177 ---LKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYT 251 (359)
T ss_dssp ---HHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ---HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 444444432 26678888888888899999999999888876432 233332 2356688999999
Q ss_pred HHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814 287 EAYRVFNDLKERGYVPDT----VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362 (427)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 362 (427)
+|...++++.+.... +. ..+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...|
T Consensus 252 ~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~ 329 (359)
T 3ieg_A 252 DATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDY 329 (359)
T ss_dssp HHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999876433 22 235557788999999999999999998863 336778899999999999999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHH
Q 045814 363 KEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 363 ~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
++..+... -+...+..+..+..
T Consensus 330 ~~a~~~~p-~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 330 EAAQEHNE-NDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHTTCT-TCHHHHHHHHHHHH
T ss_pred HHHHhcCC-CChHHHHHHHHHHH
Confidence 99988632 24555665555544
No 15
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=2.1e-20 Score=183.05 Aligned_cols=151 Identities=15% Similarity=0.151 Sum_probs=122.6
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045814 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKE---RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344 (427)
Q Consensus 268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 344 (427)
-..||+++|++||+.|++++|.++|.+|.+ .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 346899999999999999999999988764 58899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhHHHHHHH
Q 045814 345 MIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD------VITYNTLIQ 417 (427)
Q Consensus 345 li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~ 417 (427)
+|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+ +++..+++ ..++.|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999997 4788999999999999999999999987665543 33334444 3355554 445555555
Q ss_pred HHHhcC
Q 045814 418 GYCKEG 423 (427)
Q Consensus 418 ~~~~~g 423 (427)
.|.+.|
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 555544
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=5e-17 Score=157.13 Aligned_cols=234 Identities=14% Similarity=0.022 Sum_probs=194.3
Q ss_pred CChhHHHHHHHHHHhcc---------------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 045814 187 DRTDLVWKLYHDLIESG---------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG 251 (427)
Q Consensus 187 ~~~~~a~~~~~~~~~~~---------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 251 (427)
+++++|..+++.+.+.. .+...+...|++++|...+++..... |+..++..+...+...|+++
T Consensus 216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence 57899999999988753 24567788999999999999999864 45788999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814 252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331 (427)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 331 (427)
+|.+.++++.+... .+..++..+...+...|++++|...|+++.+.... +...|..+...+...|++++|...++++.
T Consensus 294 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 371 (537)
T 3fp2_A 294 EFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK 371 (537)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999988753 36778999999999999999999999999887543 56788999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhc----------CCHHHHHHH
Q 045814 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-----YGETTVTYNTLIAGLCLH----------GRTDEAYHL 396 (427)
Q Consensus 332 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~ 396 (427)
+.. +.+..++..+...|...|++++|...++++.+.. .......+..+...|... |++++|...
T Consensus 372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~ 450 (537)
T 3fp2_A 372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL 450 (537)
T ss_dssp HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence 874 3356788899999999999999999999987542 112233455666778888 999999999
Q ss_pred HHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 397 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 426 (427)
|++..+... .+...+..+...|.+.|+++
T Consensus 451 ~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 451 LTKACELDP-RSEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHhccHH
Confidence 999988632 35788999999999999865
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.82 E-value=2.5e-17 Score=148.68 Aligned_cols=283 Identities=13% Similarity=-0.007 Sum_probs=214.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCC-CCHHhHHHHHHHHHhcC-
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFS-PNPNSLELYIQCLCESG- 152 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~li~~~~~~~- 152 (427)
....+...+++..|+++|+.+... .+.+...+..++..+.+.|++++|...+++. ... .+...|..+...+...|
T Consensus 28 ~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 28 LAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence 344566779999999999998765 2445667778888999999999999999873 223 35778999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 045814 153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP 232 (427)
Q Consensus 153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 232 (427)
++++|.+.|++..+.... +...|..+...+...|++++|...++.+.+ ....
T Consensus 106 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--------------------------~~~~- 157 (330)
T 3hym_B 106 KNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--------------------------LMKG- 157 (330)
T ss_dssp CHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HTTT-
T ss_pred hHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hccc-
Confidence 999999999999886543 566777777777776666666666555443 2222
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCh
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--------YVPDT 304 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~ 304 (427)
+...+..+...+...|++++|.+.+++..+... .+..++..+...+...|++++|...++++.+.. ...+.
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 236 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE 236 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence 345666688888888899999998888887643 356788888888889999999998888886531 12245
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 384 (427)
.++..+...+...|++++|...++++.+... .+..++..+..+|...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6888888889999999999999999887642 356778888888999999999999999887753 22567777777777
Q ss_pred -HhcCCHH
Q 045814 385 -CLHGRTD 391 (427)
Q Consensus 385 -~~~g~~~ 391 (427)
...|+.+
T Consensus 315 ~~~~g~~~ 322 (330)
T 3hym_B 315 EMYIGDSE 322 (330)
T ss_dssp HTTTTC--
T ss_pred HHHhCchh
Confidence 4555543
No 18
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=184.15 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHHccCChhHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 045814 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVA---RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308 (427)
Q Consensus 232 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 308 (427)
.-..||++||++||+.|++++|.++|.+|.+ .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3457999999999999999999999988764 5789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHH
Q 045814 309 TVIHGLCKMGWL-GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET------TVTYNTLI 381 (427)
Q Consensus 309 ~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li 381 (427)
++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+ +.+..+++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999984 789999999999999999999999987665543 33334444 3345554 44445555
Q ss_pred HHHHhcC
Q 045814 382 AGLCLHG 388 (427)
Q Consensus 382 ~~~~~~g 388 (427)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.81 E-value=9.1e-18 Score=154.20 Aligned_cols=278 Identities=10% Similarity=-0.030 Sum_probs=176.7
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 183 (427)
...+..+...+.+.|++++|...+++. .. +.+..++..+..++...|++++|.+.|+++.+.... +..++..+...+
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~ 142 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSF 142 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344555556666666666666666552 22 223455566666666666666666666666554322 455555555555
Q ss_pred HHcCChhHHHHHHHHHHhcchh-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814 184 IKIDRTDLVWKLYHDLIESGYL-IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 262 (427)
...|++++|...++.+...+.- ...+...+.... ...+ ...+. .+..+...|++++|...++++.+
T Consensus 143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~ 209 (368)
T 1fch_A 143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-----------GAGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVR 209 (368)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------C-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh-----------hhcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHH
Confidence 5555555555555554432110 000000000000 0000 00111 23333478888999999988887
Q ss_pred CCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 045814 263 RNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341 (427)
Q Consensus 263 ~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 341 (427)
..... +..++..+...|.+.|++++|...|+++.+.... +..+|..+...+...|++++|...++++.+.. +.+..+
T Consensus 210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~ 287 (368)
T 1fch_A 210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS 287 (368)
T ss_dssp HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 64322 4678888888899999999999999988776432 56788888889999999999999999988764 235678
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC----------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE----------TTVTYNTLIAGLCLHGRTDEAYHLFEE 399 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (427)
+..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|..++++
T Consensus 288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 8888889999999999999998887642111 157888999999999999998888764
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.80 E-value=3.4e-17 Score=150.37 Aligned_cols=276 Identities=10% Similarity=0.008 Sum_probs=212.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhc
Q 045814 74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCES 151 (427)
Q Consensus 74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~ 151 (427)
......+...+++..|+..|+.+... .+.+..++..+...+.+.|++++|.+.+++. .. +.+..++..+..+|...
T Consensus 68 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~ 145 (368)
T 1fch_A 68 FEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE 145 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 34556677889999999999999764 3456889999999999999999999999872 22 34678999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045814 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV 231 (427)
Q Consensus 152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 231 (427)
|++++|.+.|+++.+.... +...+..+.... + ... .-.... .+..+...|++++|...++++......
T Consensus 146 g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~---~----~~~---~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~ 213 (368)
T 1fch_A 146 SLQRQACEILRDWLRYTPA-YAHLVTPAEEGA---G----GAG---LGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPT 213 (368)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHh---h----hhc---ccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcC
Confidence 9999999999999986533 222222111000 0 000 000001 222333778888888888888875433
Q ss_pred C-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814 232 P-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310 (427)
Q Consensus 232 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (427)
. +..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+
T Consensus 214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l 291 (368)
T 1fch_A 214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNL 291 (368)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence 2 57889999999999999999999999998874 33578899999999999999999999999987643 267789999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGLLP----------NEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
...|.+.|++++|...++++.+..... ...+|..+..+|...|+.++|..++++.
T Consensus 292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 999999999999999999988753221 1578999999999999999999887743
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.79 E-value=9.5e-18 Score=154.08 Aligned_cols=274 Identities=9% Similarity=-0.039 Sum_probs=183.9
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 183 (427)
...+..+...+.+.|++++|...|++. .. +.+..+|..+..+|...|++++|.+.|+++.+.... +..++..+..+|
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 143 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY 143 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 344666667777777777777777652 22 234566777777777777777777777777665332 466666666666
Q ss_pred HHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC
Q 045814 184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263 (427)
Q Consensus 184 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 263 (427)
...|++++|...|+++.+.+.-.. .+ + .........+..+...+...|++++|...++++.+.
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~---------~~---~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 206 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYK---------YL---V-----KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ 206 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHH---------CC---------------------------CCHHHHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccch---------HH---H-----hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence 666666666666665554211000 00 0 000011234455677888889999999999988877
Q ss_pred CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045814 264 NRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY 342 (427)
Q Consensus 264 ~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 342 (427)
... ++..++..+...|.+.|++++|...|+++.+.... +..+|..+..+|...|++++|...++++.+.. +.+..++
T Consensus 207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 284 (365)
T 4eqf_A 207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSR 284 (365)
T ss_dssp SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH
Confidence 532 25778888889999999999999999998876433 67788889999999999999999999988863 2247788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYG-----------ETTVTYNTLIAGLCLHGRTDEAYHLFEE 399 (427)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~ 399 (427)
..+..+|...|++++|...|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 88889999999999999999988764211 1367888999999999999888877654
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.78 E-value=8.7e-17 Score=147.64 Aligned_cols=270 Identities=10% Similarity=-0.023 Sum_probs=207.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhc
Q 045814 74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCES 151 (427)
Q Consensus 74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~ 151 (427)
......+...+++..|+..|+.+... .+.+..++..+...+.+.|++++|...|++. ...| +..+|..+..+|...
T Consensus 69 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 69 FEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence 34455677889999999999999764 2457889999999999999999999999973 3334 578999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045814 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV 231 (427)
Q Consensus 152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 231 (427)
|++++|.+.|+++.+.... +...+..+. ....-...+...+...|++++|.+.++++......
T Consensus 147 g~~~~A~~~~~~al~~~p~-~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 209 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQNPK-YKYLVKNKK----------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD 209 (365)
T ss_dssp TCHHHHHHHHHHHHHHCHH-HHCC-----------------------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred ccHHHHHHHHHHHHHhCcc-chHHHhhhc----------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence 9999999999999885322 222222210 00000112345566777777888888877765432
Q ss_pred -CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814 232 -PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310 (427)
Q Consensus 232 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (427)
.+..++..+...+...|++++|.+.+++..+... .+..+|..+...|.+.|++++|...|+++.+.... +..+|..+
T Consensus 210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 287 (365)
T 4eqf_A 210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNL 287 (365)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence 2678999999999999999999999999988743 36789999999999999999999999999887433 57889999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGLL-----------PNEYTYNSMIHGYCRIDNLEEAKRLHKE 364 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 364 (427)
..+|.+.|++++|...++++.+.... .+..+|..+..++...|+.+.+..+.+.
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999999999998875211 1356889999999999999988887765
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.77 E-value=1.4e-16 Score=143.49 Aligned_cols=279 Identities=10% Similarity=-0.034 Sum_probs=203.4
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 182 (427)
+...+..+...+...|++++|..++++. .. +.+..++..+..++...|++++|.+.|+++.+.... +..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence 4456677788888899999999988873 22 335678888888899999999999999988876433 66777777777
Q ss_pred HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHccCChhHHHHHHHHH
Q 045814 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL-IS-RFCEKKNFGRVSELLHTM 260 (427)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~a~~~~~~m 260 (427)
+...|++++|...++.+.+...- ...+...+. ...|+......+ .. .+...|++++|.+.++++
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 164 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQPQ---------YEQLGSVNL-----QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA 164 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTSTT---------TTTC-------------------------CCTTSHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCc---------cHHHHHHHh-----HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence 77777777777777766543110 000000000 000111111112 22 367788899999999988
Q ss_pred hhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 045814 261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340 (427)
Q Consensus 261 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 340 (427)
.+... .+..++..+...|.+.|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+..
T Consensus 165 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 241 (327)
T 3cv0_A 165 LEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR 241 (327)
T ss_dssp HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence 87753 36778888999999999999999999998876433 57788889999999999999999999988864 23577
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-----------TTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
++..+...|...|++++|.+.++++.+..... +...|..+..+|...|++++|..++++..
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 88889999999999999999999988653221 46788999999999999999999887543
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.76 E-value=4.5e-16 Score=140.20 Aligned_cols=274 Identities=11% Similarity=-0.019 Sum_probs=212.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhc
Q 045814 74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCES 151 (427)
Q Consensus 74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~ 151 (427)
......+...++++.|+.+|+.+... .+.+...+..+...+.+.|++++|...+++. .. +.+..++..+...+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 34455677889999999999998764 2447888999999999999999999999873 22 34678899999999999
Q ss_pred CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh-HH-HHHhcCChhHHHHHHHHHHHCC
Q 045814 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-IQ-AFCNDGKVSEGYELLRQVLEDG 229 (427)
Q Consensus 152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l-~~-~~~~~g~~~~a~~~~~~~~~~~ 229 (427)
|++++|.+.|+++.+.... +...+..+...+.... ....+ .. .+...|++++|.+.++++....
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 168 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDID-------------DLNVQSEDFFFAAPNEYRECRTLLHAALEMN 168 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC---------------------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHH-------------HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999999986433 3333333321110000 00011 11 2667788889999998888765
Q ss_pred CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 045814 230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT 309 (427)
Q Consensus 230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 309 (427)
.. +..++..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...|+++.+.... +..++..
T Consensus 169 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~ 245 (327)
T 3cv0_A 169 PN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYN 245 (327)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 43 778899999999999999999999999988743 35778999999999999999999999999876533 6778999
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIHKGLLP-----------NEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
+...+...|++++|...++++.+..... +..++..+..++...|++++|..+++...
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999999999998764321 46788899999999999999999987543
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=7.4e-14 Score=133.43 Aligned_cols=314 Identities=13% Similarity=0.080 Sum_probs=159.6
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHH----cCChHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCCh
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE----SGLI 154 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~ 154 (427)
.++...|+..|+.+... -+...+..|...|.. .+++++|.++|++.-..-++..+..|...|.. .+++
T Consensus 56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~ 131 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK 131 (490)
T ss_dssp CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 45555666665555432 234455555555555 55666666666553222344555555555555 5556
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcch------hHHHHHh----cCChhHHHH
Q 045814 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIESGY------LIQAFCN----DGKVSEGYE 220 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~------l~~~~~~----~g~~~~a~~ 220 (427)
++|.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.+. +...|.. .++.++|.+
T Consensus 132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 66666666555543 34445555555554 5556666666655554431 3333333 455566666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHH
Q 045814 221 LLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAYRVF 292 (427)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~ 292 (427)
+|++..+.| +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~ 282 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY 282 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence 666555543 33444445555543 455556666655555443 23344444444444 55555555555
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHH
Q 045814 293 NDLKERGYVPDTVMYTTVIHGLCKM-----GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID---NLEEAKRLHKE 364 (427)
Q Consensus 293 ~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~ 364 (427)
++..+.| +...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.+.|++
T Consensus 283 ~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~ 356 (490)
T 2xm6_A 283 RKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRK 356 (490)
T ss_dssp HHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred HHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 5555442 333444444444444 55555555555555543 2334444444444433 45555555555
Q ss_pred HHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814 365 MLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421 (427)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 421 (427)
..+.| +...+..|...|.. .+++++|.+.|++..+.| +...+..|-..|.+
T Consensus 357 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 357 AAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence 55542 44455555555555 455555555555555543 23344444444433
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.73 E-value=8.9e-17 Score=146.22 Aligned_cols=287 Identities=11% Similarity=0.049 Sum_probs=134.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChh
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 155 (427)
+..++...++.+.|.++++.. +++.+|..+..++.+.|++++|.+.|.+. +|..+|..++.++...|+++
T Consensus 9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~E 78 (449)
T 1b89_A 9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWE 78 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHH
Confidence 455667788899999999887 23459999999999999999999999764 57789999999999999999
Q ss_pred HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHH--HhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 045814 156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL--IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233 (427)
Q Consensus 156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 233 (427)
+|...++..++. .+++.+.+.++.+|.+.|+++++.++++.- .....+...|...|.+++|...|..+
T Consensus 79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp --------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 999988777663 456788999999999999999999888642 12245888999999999999999976
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (427)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.....++..
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~ 216 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINY 216 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHH
Confidence 37999999999999999999999988 268899999999999999999966555422 234445578899
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCC------ChhhHHHHHHHHHh
Q 045814 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGE------TTVTYNTLIAGLCL 386 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~ 386 (427)
|.+.|++++|..+++...... .-....|+-+.-+|++- ++++..+-++..... +++| +...|..+.-.|..
T Consensus 217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999998765 44567788887777766 344444444333222 2333 46789999999999
Q ss_pred cCCHHHHHHH
Q 045814 387 HGRTDEAYHL 396 (427)
Q Consensus 387 ~g~~~~A~~~ 396 (427)
.++++.|...
T Consensus 295 ~~e~d~A~~t 304 (449)
T 1b89_A 295 YEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHH
T ss_pred hchHHHHHHH
Confidence 9999988874
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=9.2e-15 Score=129.47 Aligned_cols=251 Identities=12% Similarity=0.040 Sum_probs=171.1
Q ss_pred HHHHHHcCChHHHHHHHHhc-CCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh
Q 045814 113 FDSLVEARAFKVAMDFLDST-GFSPNP--NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~-~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 189 (427)
++.....|++..|+..+++. ...|+. .....+.++|...|+++.|+..++.. -.|+..++..+...+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~----- 76 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLA----- 76 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHc-----
Confidence 45566789999999988873 444543 35567788999999999998766441 2345555555554444
Q ss_pred hHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC
Q 045814 190 DLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268 (427)
Q Consensus 190 ~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~ 268 (427)
..|+.++|++.++++...+..| +...+..+...+...|++++|.+.+++ ..+
T Consensus 77 ---------------------~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~ 129 (291)
T 3mkr_A 77 ---------------------SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDS 129 (291)
T ss_dssp ---------------------CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCS
T ss_pred ---------------------CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCC
Confidence 4455556666666666655444 445556666777888888888888776 345
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY---TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345 (427)
Q Consensus 269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 345 (427)
...+..+...|.+.|++++|.+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~l 206 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQ 206 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHH
Confidence 6677777788888888888888888887663 443211 12223344557788888888888776 34467777788
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE-AYHLFEEMAQK 403 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~ 403 (427)
..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 888888888888888888877653 2266777778888888888765 56777777764
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.72 E-value=3.1e-13 Score=129.16 Aligned_cols=309 Identities=12% Similarity=0.034 Sum_probs=258.2
Q ss_pred HHHHHHh----cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHH----cCChHHHHHHHHhcCCCCCHHhHHHHHHH
Q 045814 76 FREFLKQ----QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQC 147 (427)
Q Consensus 76 ~~~~l~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~ 147 (427)
+..++.. .++...|++.|+.+... -+...+..|...|.. .+++++|..+|++.-..-++..+..|...
T Consensus 81 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~ 156 (490)
T 2xm6_A 81 LGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDA 156 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4445555 78999999999998653 367788888888888 78999999999984333467888889998
Q ss_pred HHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcch------hHHHHHh--
Q 045814 148 LCE----SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIESGY------LIQAFCN-- 211 (427)
Q Consensus 148 ~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~------l~~~~~~-- 211 (427)
|.. .+++++|.+.|++..+.| +...+..+...|.. .++.++|.++|+...+.+. +...|..
T Consensus 157 y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~ 233 (490)
T 2xm6_A 157 YFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGI 233 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence 987 889999999999998864 67888889999988 8999999999999887753 4555554
Q ss_pred --cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---
Q 045814 212 --DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS--- 282 (427)
Q Consensus 212 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~--- 282 (427)
.+++++|..+|++..+.| +...+..+...|.. .++.++|...|++..+.| +...+..+...|...
T Consensus 234 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 234 GVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp SSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence 789999999999998865 45677777777877 899999999999998775 455777788888877
Q ss_pred --CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cC
Q 045814 283 --RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG---WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----ID 353 (427)
Q Consensus 283 --~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g 353 (427)
+++++|...|++..+.| +...+..+...|...| +.++|...|++..+.| +...+..+...|.. .+
T Consensus 308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~ 381 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKK 381 (490)
T ss_dssp BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence 89999999999998875 5567777888887766 7899999999999875 66788888888888 89
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGIF 406 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 406 (427)
++++|...|++..+.| +...+..|...|.. .++.++|.+.|++..+.|..
T Consensus 382 ~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 382 DEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 9999999999999875 67888899999988 89999999999999987643
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.71 E-value=8.9e-17 Score=146.23 Aligned_cols=271 Identities=13% Similarity=0.131 Sum_probs=127.4
Q ss_pred HHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHH
Q 045814 117 VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196 (427)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 196 (427)
-+.|++++|.+.+++.+ ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~---~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 36788999999999883 4469999999999999999999999653 57889999999999999999999988
Q ss_pred HHHHhc-------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH
Q 045814 197 HDLIES-------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269 (427)
Q Consensus 197 ~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 269 (427)
+...+. ..++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 85 ~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------- 148 (449)
T 1b89_A 85 QMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------- 148 (449)
T ss_dssp ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred HHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence 777654 237779999999999988885 367779999999999999999999999976
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..|..+..++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. +.|+ -...++..|
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Y 217 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYY 217 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHH
Confidence 48999999999999999999999998 278899999999999999999965544322 3343 355788999
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhHHHHHHHHHHh
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH--GRTDEAYHLFEEMAQKGIFR------DVITYNTLIQGYCK 421 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~ 421 (427)
.+.|.+++|..+++...... +-....|+-|..+|++- ++..+.++.|.. ..+++| +...|.-++-.|.+
T Consensus 218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~ 294 (449)
T 1b89_A 218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDK 294 (449)
T ss_dssp HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998664 44577888887777765 334444444431 113333 35567777777777
Q ss_pred cCCCC
Q 045814 422 EGKIV 426 (427)
Q Consensus 422 ~g~~~ 426 (427)
.|++|
T Consensus 295 ~~e~d 299 (449)
T 1b89_A 295 YEEYD 299 (449)
T ss_dssp TTCHH
T ss_pred hchHH
Confidence 77654
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=8.1e-15 Score=129.84 Aligned_cols=270 Identities=12% Similarity=0.087 Sum_probs=197.6
Q ss_pred HhcCChHHHHHHHHHHhhcCCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814 81 KQQNNVLLSIRFFQWLHSHYGFSPDL--VSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~ 158 (427)
-..+++..|+..++.+.. ..|+. .....+.++|...|+++.|...++.. ..|+..++..+...+...++.++|+
T Consensus 10 ~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 357899999988876532 34543 35566789999999999999988764 3567778999999999999999999
Q ss_pred HHHHHHHhcCCCcC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 045814 159 CAFSKLKEMGVFGS-IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237 (427)
Q Consensus 159 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 237 (427)
+.++++...+..|+ ...+..+...+...|++++|.+. +++ ..+...+
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~--------------------------l~~------~~~~~~~ 133 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT--------------------------LHQ------GDSLECM 133 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH--------------------------HTT------CCSHHHH
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH--------------------------HhC------CCCHHHH
Confidence 99999998775554 44555555566555555555544 443 2467788
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY---EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314 (427)
Q Consensus 238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (427)
..+...+.+.|++++|.+.++++.+.. |+.... ...+..+...|++++|..+|+++.+... .+...|+.+..++
T Consensus 134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~ 210 (291)
T 3mkr_A 134 AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACH 210 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 888899999999999999999988874 443211 2233444556899999999999987743 4778888899999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE-AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (427)
.+.|++++|...++++.+... -+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++
T Consensus 211 ~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~ 284 (291)
T 3mkr_A 211 MAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRL 284 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHH
Confidence 999999999999999888742 367788888888888998865 578888888753 44322 22334455555555
Q ss_pred HH
Q 045814 394 YH 395 (427)
Q Consensus 394 ~~ 395 (427)
..
T Consensus 285 ~~ 286 (291)
T 3mkr_A 285 VL 286 (291)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=4.3e-13 Score=129.44 Aligned_cols=204 Identities=11% Similarity=0.045 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChh-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 045814 217 EGYELLRQVLEDGLVPENTAFNKLISRFCE-------KKNFG-------RVSELLHTMVARNRAPDNFTYEEVINGLCKS 282 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 282 (427)
.+..+|++.....+ -+...|..+...+.+ .|+++ +|..++++..+.-.+-+...|..++..+.+.
T Consensus 256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 44556666555422 256677777777665 68876 8899999888632233577888889999999
Q ss_pred CChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhhcCCHHHHH
Q 045814 283 RKRLEAYRVFNDLKERGYVPD--TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH-GYCRIDNLEEAK 359 (427)
Q Consensus 283 ~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~ 359 (427)
|++++|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++..+... .+...|..... .+...|+.++|.
T Consensus 335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~ 411 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF 411 (530)
T ss_dssp TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHH
Confidence 9999999999999886 343 24788888888889999999999999987632 12223322222 234689999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HhHHHHHHHHHHhcCCC
Q 045814 360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI-FRD--VITYNTLIQGYCKEGKI 425 (427)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~li~~~~~~g~~ 425 (427)
.+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+....+.|+.
T Consensus 412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~ 479 (530)
T 2ooe_A 412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL 479 (530)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 9999888753 33678899999999999999999999999988642 332 44777778777777764
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.68 E-value=5.7e-14 Score=133.43 Aligned_cols=334 Identities=10% Similarity=-0.021 Sum_probs=222.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhc----CC---CCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-------C--CC-CC
Q 045814 75 FFREFLKQQNNVLLSIRFFQWLHSH----YG---FSPDLVSCNVLFDSLVEARAFKVAMDFLDST-------G--FS-PN 137 (427)
Q Consensus 75 ~~~~~l~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~--~~-~~ 137 (427)
.+..+....++.+.|++.|+.+..- .+ ......+|+.+..+|...|++++|...+++. . .. ..
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 4566777889999999999876431 11 2234678999999999999999999988752 1 11 23
Q ss_pred HHhHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCcCHhhHHHHHHH---HHHcCChhHHHHHHHHHHhcch--------
Q 045814 138 PNSLELYIQCLCES--GLIEEAFCAFSKLKEMGVFGSIKTWNSALLG---CIKIDRTDLVWKLYHDLIESGY-------- 204 (427)
Q Consensus 138 ~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~-------- 204 (427)
..+++.+..++... +++++|.+.|++..+..+. +...+..+..+ +...++.++|++.+++.++.+.
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~ 214 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL 214 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence 56677666666554 5699999999999886543 45555555544 4456788889999988876532
Q ss_pred hHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 045814 205 LIQ----AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280 (427)
Q Consensus 205 l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 280 (427)
+.. .+...|+.++|.+.+++....... +..++..+...|...|++++|...+++..+..+. +..++..+...|.
T Consensus 215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~ 292 (472)
T 4g1t_A 215 LALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYR 292 (472)
T ss_dssp HHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence 222 233457789999999998876544 6778899999999999999999999999887432 4556666665554
Q ss_pred hc-------------------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-
Q 045814 281 KS-------------------RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY- 340 (427)
Q Consensus 281 ~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~- 340 (427)
.. +..++|...|++..+.... +..++..+...|...|++++|...|++..+....+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~ 371 (472)
T 4g1t_A 293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371 (472)
T ss_dssp HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence 32 2356788888887766443 56788889999999999999999999999875443321
Q ss_pred -HHHHHHH-HHhhcCCHHHHHHHHHHHHHCC-----------------------CCCChhhHHHHHHHHHhcCCHHHHHH
Q 045814 341 -TYNSMIH-GYCRIDNLEEAKRLHKEMLDKG-----------------------YGETTVTYNTLIAGLCLHGRTDEAYH 395 (427)
Q Consensus 341 -~~~~li~-~~~~~g~~~~a~~~~~~m~~~~-----------------------~~p~~~~~~~li~~~~~~g~~~~A~~ 395 (427)
.+..+.. .+...|+.++|...|++..+.. -+.+..+|..+...|...|++++|.+
T Consensus 372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~ 451 (472)
T 4g1t_A 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE 451 (472)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2222222 2346789999999988876542 12356788899999999999999999
Q ss_pred HHHHHHHCC-CCCCHhHH
Q 045814 396 LFEEMAQKG-IFRDVITY 412 (427)
Q Consensus 396 ~~~~m~~~g-~~p~~~~~ 412 (427)
.|++..+.| ..|+..+|
T Consensus 452 ~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 452 DSERGLESGSLIPSASSW 469 (472)
T ss_dssp ------------------
T ss_pred HHHHHHhcCCCCCcHhhc
Confidence 999988764 34554443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.8e-14 Score=124.91 Aligned_cols=223 Identities=12% Similarity=0.023 Sum_probs=120.5
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--C----HhhHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG--S----IKTWNS 178 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~----~~~~~~ 178 (427)
...+..+...+...|++++|...+++. ....+...|..+..++...|++++|.+.|++..+..... + ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 345667777778888888888887762 111667778888888888888888888888777643221 1 466667
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258 (427)
Q Consensus 179 ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 258 (427)
+...+...|++++|...|+.+.+...-...+...|++++|...++++...... +...+..+...+...|++++|...++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~ 163 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYT 163 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 77777777777777777666665443344444445555555555544443211 23344444444444444444444444
Q ss_pred HHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814 259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331 (427)
Q Consensus 259 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 331 (427)
+..+... .+..++..+...|.+.|++++|...|++..+.... +...|..+...+.+.|++++|...+++..
T Consensus 164 ~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 164 EMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4444321 12334444444444444444444444444333211 23334444444444444444444444433
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=6.6e-14 Score=121.35 Aligned_cols=228 Identities=12% Similarity=0.077 Sum_probs=186.7
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~ 217 (427)
...|..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++.+.+..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------------- 68 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-------------- 68 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------
Confidence 4578888999999999999999999999887 688888888888888888888888877655320
Q ss_pred HHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 045814 218 GYELLRQVLEDGLVPE----NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN 293 (427)
Q Consensus 218 a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 293 (427)
... .++ ..++..+...+...|++++|...+++..+.. |+. ..+.+.|++++|...++
T Consensus 69 --------~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~ 129 (258)
T 3uq3_A 69 --------REM--RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAE 129 (258)
T ss_dssp --------HHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHH
T ss_pred --------ccc--ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHH
Confidence 011 111 4678888899999999999999999988864 332 45667788999999999
Q ss_pred HHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373 (427)
Q Consensus 294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 373 (427)
.+.+.... +...+..+...+...|++++|...++++.+... .+..++..+..+|...|++++|...+++..+.. +.+
T Consensus 130 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~ 206 (258)
T 3uq3_A 130 AEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNF 206 (258)
T ss_dssp HHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHH
Confidence 99876433 566788889999999999999999999988743 367788999999999999999999999998864 335
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
...|..+...|...|++++|.+.+++..+.
T Consensus 207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 207 VRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 788999999999999999999999998775
No 35
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=9.2e-13 Score=125.09 Aligned_cols=322 Identities=11% Similarity=-0.028 Sum_probs=229.1
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--------C--CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC--
Q 045814 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST--------G--FSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMG-- 168 (427)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~--~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-- 168 (427)
.......||.|..++...|++++|++.|++. + ..| ...+|+.+..+|...|++++|...|++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445678999999999999999999998752 1 123 46689999999999999999999999876531
Q ss_pred -----CCcCHhhHHHHHHHHHHc--CChhHHHHHHHHHHhcch-----------hHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814 169 -----VFGSIKTWNSALLGCIKI--DRTDLVWKLYHDLIESGY-----------LIQAFCNDGKVSEGYELLRQVLEDGL 230 (427)
Q Consensus 169 -----~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~-----------l~~~~~~~g~~~~a~~~~~~~~~~~~ 230 (427)
......++..+..++... +++++|...|++.++.+. +...+...++.++|++.+++......
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 011345676666666654 468999999999887531 22234566888999999999887654
Q ss_pred CCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 045814 231 VPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM 306 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 306 (427)
. +..++..+...+.. .+++++|.+.+++...... .+..++..+...|.+.|++++|...|++..+.... +..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence 3 55666666555544 4678899999998887643 35678899999999999999999999999887443 4556
Q ss_pred HHHHHHHHHcc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 307 YTTVIHGLCKM-------------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 307 ~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+..+...|... +..++|...+++..+... .+..++..+...|...|++++|...|++..+
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 66666555322 235678888888877642 3456788899999999999999999999988
Q ss_pred CCCCCCh--hhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHhHHHHHHHHHHh
Q 045814 368 KGYGETT--VTYNTLIA-GLCLHGRTDEAYHLFEEMAQKGI-----------------------FRDVITYNTLIQGYCK 421 (427)
Q Consensus 368 ~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~-----------------------~p~~~~~~~li~~~~~ 421 (427)
....+.. ..+..+.. .+...|++++|+..|++..+... +.+..+|..+-..|..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~ 442 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL 442 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6543322 12333332 23577999999999988765421 2245677778788888
Q ss_pred cCCCCC
Q 045814 422 EGKIVN 427 (427)
Q Consensus 422 ~g~~~e 427 (427)
.|++++
T Consensus 443 ~g~~~~ 448 (472)
T 4g1t_A 443 NEKMQQ 448 (472)
T ss_dssp HHHCC-
T ss_pred cCCHHH
Confidence 777654
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.60 E-value=6.4e-13 Score=114.88 Aligned_cols=204 Identities=12% Similarity=0.080 Sum_probs=164.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
...+...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+... .+...+..+...|...|++
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~ 121 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRY 121 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHH
Confidence 3445566666666666666665433 2677888999999999999999999999888753 3677888999999999999
Q ss_pred HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE 364 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 364 (427)
++|.+.|+++.+.+..| +...+..+...+...|++++|...++++.+... .+..++..+...|...|++++|...++.
T Consensus 122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998733344 456788888999999999999999999988742 3577888999999999999999999999
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814 365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415 (427)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 415 (427)
+.+.. +.+...+..+...+...|++++|.++++++.+. .|+...+..+
T Consensus 201 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 201 FAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 98763 346778888999999999999999999999885 4554444333
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.1e-13 Score=117.15 Aligned_cols=188 Identities=14% Similarity=0.038 Sum_probs=134.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-----
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS----- 282 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----- 282 (427)
.+...|++++|...|++.....+. +...+..+...+.+.|++++|...+++..+..+ .+...+..+...+.+.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~ 91 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAE 91 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhh
Confidence 344555566666666666655433 677788888888888888888888888887743 2566778888888888
Q ss_pred ------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814 283 ------RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356 (427)
Q Consensus 283 ------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (427)
|++++|...|++..+.... +...+..+...+...|++++|+..+++..+.. .+...+..+..+|...|+++
T Consensus 92 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~ 168 (217)
T 2pl2_A 92 DRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLD 168 (217)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHH
T ss_pred hhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHH
Confidence 8999999999988876543 56778888888889999999999999988877 57788888888899999999
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 357 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+|...|++..+.. +.+...+..+...+...|++++|.+.|++..
T Consensus 169 ~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 169 EALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999888763 2367778888888889999999988887654
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.60 E-value=1.1e-13 Score=117.11 Aligned_cols=115 Identities=10% Similarity=-0.067 Sum_probs=56.1
Q ss_pred CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 045814 248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (427)
|++++|...+++..+..+. +...+..+...|...|++++|...|++..+.. .+...+..+..++...|++++|...+
T Consensus 98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5556666666555554321 34455555556666666666666666665554 35555555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 328 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6665542 1234455555556666666666666655543
No 39
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=3.4e-12 Score=111.88 Aligned_cols=228 Identities=10% Similarity=-0.068 Sum_probs=175.8
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216 (427)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~ 216 (427)
++.++..+...|...|++++|.+.|++..+.+ +...+..+...+... ....++++
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g----------------------~~~~~~~~ 59 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQG----------------------QGVEKNLK 59 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT----------------------SSSCCCHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC----------------------CCcCCCHH
Confidence 56778888888999999999999999888732 445566666555550 00044445
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHH
Q 045814 217 EGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEA 288 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 288 (427)
+|...|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|
T Consensus 60 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 60 KAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHH
Confidence 5555555555544 56677778888888 889999999999888875 56778888888888 8999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHH
Q 045814 289 YRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKR 360 (427)
Q Consensus 289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~ 360 (427)
...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|..
T Consensus 134 ~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~ 207 (273)
T 1ouv_A 134 VEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA 207 (273)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 99999988875 55677777778877 889999999999988874 45677778888888 899999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 045814 361 LHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 361 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g 404 (427)
.+++..+.+ +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 208 ~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 208 RYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999988874 36777888888888 889999999999888865
No 40
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.59 E-value=1.5e-11 Score=124.97 Aligned_cols=300 Identities=13% Similarity=0.123 Sum_probs=167.4
Q ss_pred HhcCChHHHHHHHHHHhhcCC-CCCCHhhHHHHHHHH---------------------------HHcCChHHHHHHHHhc
Q 045814 81 KQQNNVLLSIRFFQWLHSHYG-FSPDLVSCNVLFDSL---------------------------VEARAFKVAMDFLDST 132 (427)
Q Consensus 81 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~---------------------------~~~~~~~~a~~~~~~~ 132 (427)
...+.+..|+++++.+..+.. +.-+...-+.++... ...|.+++|..+|++.
T Consensus 996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 356778888888887753322 223344444444433 3445555555555554
Q ss_pred CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---hhHHHH
Q 045814 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---YLIQAF 209 (427)
Q Consensus 133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~l~~~~ 209 (427)
+ -.....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|...|.+..... -++..+
T Consensus 1076 ~--~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~ 1144 (1630)
T 1xi4_A 1076 D--VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAA 1144 (1630)
T ss_pred C--CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHH
Confidence 3 11111222222 3455555555555331 35566666666666666666666665543221 255666
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 289 (427)
.+.|++++|.+.|....+.. ++....+.++.+|++.+++++..... . .++...|..+...|...|++++|.
T Consensus 1145 ~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A 1145 NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred HHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 66666666666666555433 22222223566666666655433332 1 234445555666666666666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 045814 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369 (427)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 369 (427)
.+|... ..|..+...+.+.|++++|.+.+++. .+..+|..+-.+|...|++..|......+
T Consensus 1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I---- 1276 (1630)
T 1xi4_A 1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI---- 1276 (1630)
T ss_pred HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 666653 25666666666666666666666654 24456666666666666666666544432
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814 370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421 (427)
Q Consensus 370 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 421 (427)
..++..+..++..|.+.|.+++|+.+++...... +-....|+-|...+++
T Consensus 1277 -iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1277 -VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred -hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 2356667788888888899999999887776432 1123345444444444
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.58 E-value=1.3e-12 Score=110.58 Aligned_cols=206 Identities=10% Similarity=0.011 Sum_probs=160.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CC
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS-RK 284 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~ 284 (427)
...+...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+... .+..++..+...+... |+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCc
Confidence 3344455555666666666555432 2567888899999999999999999999887643 3567888899999999 99
Q ss_pred hHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 363 (427)
+++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+... .+...+..+...|...|++++|...++
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999987332333 56788888999999999999999999988642 357788889999999999999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li 416 (427)
.+.+.....+...+..+...+...|+.++|..+++.+.+. .|+......++
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l 222 (225)
T 2vq2_A 172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL 222 (225)
T ss_dssp HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence 9887643146777888888889999999999999998764 45555544443
No 42
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.58 E-value=5.7e-13 Score=116.56 Aligned_cols=234 Identities=11% Similarity=0.017 Sum_probs=126.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814 140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219 (427)
Q Consensus 140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (427)
.+......+...|++++|...|++..+.... +...+..+...+...|++++|...++
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~---------------------- 61 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIE---------------------- 61 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHH----------------------
Confidence 3444555566666666666666666654322 33345544444444444444433333
Q ss_pred HHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814 220 ELLRQVLEDGLVP--ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297 (427)
Q Consensus 220 ~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 297 (427)
+....+..+ ....|..+...+...|++++|.+.+++..+.... +..++..+...|...|++++|...|++..+
T Consensus 62 ----~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 136 (272)
T 3u4t_A 62 ----TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR 136 (272)
T ss_dssp ----HHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred ----HHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 333311111 1233556666666666666666666666654322 345666666666666666666666666655
Q ss_pred CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCC-CCCC
Q 045814 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN---LEEAKRLHKEMLDKG-YGET 373 (427)
Q Consensus 298 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~ 373 (427)
.... +...|..+...+...+++++|...++++.+... .+...+..+...+...|+ +++|...+++..+.. -.|+
T Consensus 137 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 137 PTTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp SSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred cCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 5222 344555555223333466777777766666531 234555555666666665 666666666655431 1122
Q ss_pred ------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 374 ------TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 374 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
...|..+...|...|++++|.+.|++..+.
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 145666666777777777777777777664
No 43
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.58 E-value=1e-13 Score=121.48 Aligned_cols=244 Identities=10% Similarity=-0.067 Sum_probs=143.7
Q ss_pred HcCChHHHHHHHHhc-CCC----C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhH
Q 045814 118 EARAFKVAMDFLDST-GFS----P-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL 191 (427)
Q Consensus 118 ~~~~~~~a~~~~~~~-~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~ 191 (427)
..|++++|...+++. ... | +..++..+...+...|++++|...|+++.+.... +..+|..+...+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence 446667777776652 211 1 2445666677777777777777777776665333 45556555555555555555
Q ss_pred HHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhh
Q 045814 192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271 (427)
Q Consensus 192 a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 271 (427)
|...|+++ ...... +..++..+...+...|++++|...++++.+.. |+...
T Consensus 96 A~~~~~~a--------------------------l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~ 146 (275)
T 1xnf_A 96 AYEAFDSV--------------------------LELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPF 146 (275)
T ss_dssp HHHHHHHH--------------------------HHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHH--------------------------HhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChH
Confidence 44444433 332221 45667777777777888888888887777653 33333
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 045814 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP---NEYTYNSMIHG 348 (427)
Q Consensus 272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~ 348 (427)
....+..+...|++++|...+.+...... ++...+ .++..+...++.++|...++++....... +..++..+...
T Consensus 147 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~ 224 (275)
T 1xnf_A 147 RSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY 224 (275)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence 44444455666777888887766655422 233333 35666666777777777777765542110 14566777777
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 397 (427)
|...|++++|...|++..+.. |+ .+.....++...|++++|++-+
T Consensus 225 ~~~~g~~~~A~~~~~~al~~~--p~--~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 225 YLSLGDLDSATALFKLAVANN--VH--NFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC--CT--TCHHHHHHHHHHHHHHHC----
T ss_pred HHHcCCHHHHHHHHHHHHhCC--ch--hHHHHHHHHHHHHHHHhhHHHH
Confidence 777888888888888777652 32 2333355566667777776655
No 44
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.57 E-value=7.2e-11 Score=113.88 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=161.8
Q ss_pred HHHHHHHHHHhcch--------hHHHHHh-------cCChh-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 045814 191 LVWKLYHDLIESGY--------LIQAFCN-------DGKVS-------EGYELLRQVLEDGLVPENTAFNKLISRFCEKK 248 (427)
Q Consensus 191 ~a~~~~~~~~~~~~--------l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 248 (427)
++..+|++.+.... ++..+.+ .|+++ +|..++++....-.+-+...|..++..+.+.|
T Consensus 256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g 335 (530)
T 2ooe_A 256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 335 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence 56667777766521 3333443 68887 89999999886322236888999999999999
Q ss_pred ChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCHHHHHH
Q 045814 249 NFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-LCKMGWLGDARK 325 (427)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~ 325 (427)
++++|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++..+.... +...|...... +...|+.++|..
T Consensus 336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~ 412 (530)
T 2ooe_A 336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 412 (530)
T ss_dssp CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHH
Confidence 999999999999986 343 258889999999999999999999999876322 22333322222 336899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY-GET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 326 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+|++..+.. +-+...|..++..+.+.|+.++|..+|++....+. .|+ ...|...+......|+.+.+.++++++.+
T Consensus 413 ~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 413 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999998863 23578899999999999999999999999998632 232 44888889988999999999999999887
Q ss_pred C
Q 045814 403 K 403 (427)
Q Consensus 403 ~ 403 (427)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 4
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=7.1e-12 Score=109.82 Aligned_cols=224 Identities=9% Similarity=-0.046 Sum_probs=175.5
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE----SGLIEEAFCAFSKLKEMGVFGSIKTWNSAL 180 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll 180 (427)
+..++..+...+...|++++|.+.|++.-..-+..++..+...|.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 5778888899999999999999999974324467788899999999 999999999999999875 667777777
Q ss_pred HHHHH----cCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhH
Q 045814 181 LGCIK----IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGR 252 (427)
Q Consensus 181 ~~~~~----~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~ 252 (427)
..|.. .+++++|... |++..+.+ +...+..+...|.. .+++++
T Consensus 82 ~~~~~g~~~~~~~~~A~~~--------------------------~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~ 132 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQY--------------------------YSKACDLK---YAEGCASLGGIYHDGKVVTRDFKK 132 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHH--------------------------HHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred HHHhCCCCcccCHHHHHHH--------------------------HHHHHHcC---CccHHHHHHHHHHcCCCcccCHHH
Confidence 66666 5555555544 44444443 55677777778887 888888
Q ss_pred HHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHH
Q 045814 253 VSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDAR 324 (427)
Q Consensus 253 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~ 324 (427)
|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.
T Consensus 133 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~ 206 (273)
T 1ouv_A 133 AVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL 206 (273)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 888888888775 45667777777777 888889999888887764 45677778888888 88899999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCC
Q 045814 325 KMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKRLHKEMLDKG 369 (427)
Q Consensus 325 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~ 369 (427)
..+++..+.+ +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 207 ~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 207 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998888874 25667777777877 888899999888888764
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2.9e-12 Score=110.76 Aligned_cols=201 Identities=12% Similarity=0.007 Sum_probs=132.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~ 217 (427)
...|..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~----------------- 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKAL----------------- 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence 345666666777777777777777777665322 45555555555555555555554444433
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
.... .+...+..+...+...|++++|.+.++++.+.+..| +...+..+...+.+.|++++|...|+++.
T Consensus 99 ---------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 99 ---------ASDS-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp ---------HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------HHCc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2221 145566677777777777777777777776632233 34566677777777788888888877776
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+.+.
T Consensus 169 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 169 RLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 65432 46677777777778888888888887777653 235566777777777788888888888877765
No 47
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.56 E-value=2e-12 Score=118.55 Aligned_cols=228 Identities=10% Similarity=0.044 Sum_probs=130.1
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGL-IEEAFCAFSKLKEMGVFGSIKTWNSALLG 182 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 182 (427)
...|+.+..++.+.|++++|+..+++ ....| +..+|+.+..++...|+ +++|+..|++..+.... +...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 44555566666666666666666665 23333 34556666666666664 66666666666665433 45555555544
Q ss_pred HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262 (427)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 262 (427)
+...|++ ++|+..|++++..... +...|..+..++.+.|++++|+..++++++
T Consensus 176 ~~~~g~~--------------------------~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~ 228 (382)
T 2h6f_A 176 VEWLRDP--------------------------SQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228 (382)
T ss_dssp HHHHTCC--------------------------TTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred HHHccCH--------------------------HHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4444433 3333444444443332 556666666666667777777777777666
Q ss_pred CCCCCCHhhHHHHHHHHHh-cCChHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHcC
Q 045814 263 RNRAPDNFTYEEVINGLCK-SRKRLEA-----YRVFNDLKERGYVPDTVMYTTVIHGLCKMG--WLGDARKMWFEMIHKG 334 (427)
Q Consensus 263 ~~~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~ 334 (427)
.... +...|+.+..++.+ .|..++| +..|++..+.... +...|+.+...+...| ++++|+..+.++ +.
T Consensus 229 l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~- 304 (382)
T 2h6f_A 229 EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP- 304 (382)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-
T ss_pred hCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-
Confidence 5432 45566666666666 4444555 3566666554332 4556666666666655 466666666665 22
Q ss_pred CCCCHHHHHHHHHHHhhcC---------CHHHHHHHHHHH
Q 045814 335 LLPNEYTYNSMIHGYCRID---------NLEEAKRLHKEM 365 (427)
Q Consensus 335 ~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m 365 (427)
...+...+..+...|.+.| ..++|.++++++
T Consensus 305 ~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 2234455666666666553 246666666666
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=3.4e-12 Score=107.93 Aligned_cols=202 Identities=8% Similarity=-0.072 Sum_probs=143.0
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE 217 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~ 217 (427)
...+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------- 69 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQAL----------------- 69 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHH-----------------
Confidence 456777777788888888888888877765432 45566666666665555555555544433
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814 218 GYELLRQVLEDGLVPENTAFNKLISRFCEK-KNFGRVSELLHTMVARNRAPD-NFTYEEVINGLCKSRKRLEAYRVFNDL 295 (427)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m 295 (427)
.... .+..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...|+++
T Consensus 70 ---------~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 139 (225)
T 2vq2_A 70 ---------SIKP-DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS 139 (225)
T ss_dssp ---------HHCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------HhCC-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3222 2556777778888888 888888888888877322333 467777888888888888888888888
Q ss_pred HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.+.... +...+..+...+...|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 140 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 140 LAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 766432 566778888888888888888888888877643145666777777788888888888888887754
No 49
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.56 E-value=2e-11 Score=124.05 Aligned_cols=304 Identities=13% Similarity=0.124 Sum_probs=238.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 045814 75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI 154 (427)
Q Consensus 75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 154 (427)
-+..++...+.++.|..+|+... -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|++
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCH
Confidence 34556667788899999998862 12222333332 7789999999998763 588999999999999999
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-------hhHHHHHhcCChhHHHHHHHHHHH
Q 045814 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------YLIQAFCNDGKVSEGYELLRQVLE 227 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~~ 227 (427)
++|.+.|.+. -|...|..++..+.+.|++++|.+++....+.. .++.+|++.+++++..... .
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence 9999999664 378889999999999999999999998866542 3888999999988644442 2
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY 307 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 307 (427)
.++...|..+...|...|++++|...|... ..|..+...|.+.|++++|.+.+++.. +..+|
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence 346667888999999999999999999984 489999999999999999999999872 67899
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (427)
..+..+|...|++..|...... +..+...+..++..|.+.|.+++|..+++...... +-....|+-+...|++.
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence 9999999999999999887654 33356677899999999999999999998887654 33456777777777764
Q ss_pred --CCHHHHHHHHHHHHHCCCCC------CHhHHHHHHHHHHhcCCCC
Q 045814 388 --GRTDEAYHLFEEMAQKGIFR------DVITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 388 --g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~ 426 (427)
++..++.++|..-. +++| +...|.-++--|.+.|+++
T Consensus 1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 44555555555322 2333 4567888999998888875
No 50
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=4.3e-13 Score=115.13 Aligned_cols=193 Identities=9% Similarity=0.046 Sum_probs=153.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
...+...|++++|...++++...... +...+..+...+...|++++|.+.++++.+... .+..++..+...|...|++
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp ------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhccH
Confidence 34455666677777777777664433 677888899999999999999999999887743 3677888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++
T Consensus 108 ~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 108 KEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999876543 67788889999999999999999999998774 336778888999999999999999999998
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 366 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus 186 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 186 TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 8763 336788999999999999999999999999885
No 51
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=4.1e-13 Score=124.57 Aligned_cols=302 Identities=11% Similarity=0.018 Sum_probs=192.7
Q ss_pred CCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-
Q 045814 103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPN-----PNSLELYIQCLCESGLIEEAFCAFSKLKEM----GVFG- 171 (427)
Q Consensus 103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p- 171 (427)
......+......+...|++++|...+++. ...|+ ..++..+...|...|++++|...|++.... +-.|
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 455666777777888888888888888762 22332 346777888888888888888888876543 1111
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--
Q 045814 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN-- 249 (427)
Q Consensus 172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-- 249 (427)
...++..+...+...|++++|...+++..+. .... ........++..+...+...|+
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 144 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------SREL--NDKVGEARALYNLGNVYHAKGKSF 144 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HHHH--TCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHhc--ccccchHHHHHHHHHHHHHcCCcc
Confidence 2445666666777777777777766655432 1110 0000113366667777777777
Q ss_pred ------------------hhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--
Q 045814 250 ------------------FGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD-- 303 (427)
Q Consensus 250 ------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~-- 303 (427)
+++|.+.+++.... +..+ ...++..+...|...|++++|...+++..+.... ++
T Consensus 145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 224 (406)
T 3sf4_A 145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA 224 (406)
T ss_dssp C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence 77777777765432 1111 1346777777888888888888888877543111 11
Q ss_pred --hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCC
Q 045814 304 --TVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGE 372 (427)
Q Consensus 304 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p 372 (427)
..++..+...|...|++++|...+++..... ..+. ..++..+...|...|++++|...+++..+. +..+
T Consensus 225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 2367777788888888888888888776431 1111 446677778888888888888888877643 1111
Q ss_pred -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCC
Q 045814 373 -TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK----GIF-RDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 373 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~ 425 (427)
...++..+...|...|++++|.+.+++..+. |-. ....++..+...+...|+.
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1456777788888888888888888876543 211 1244666666777666654
No 52
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.55 E-value=2.4e-12 Score=112.54 Aligned_cols=217 Identities=11% Similarity=0.068 Sum_probs=172.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcC
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSR 283 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~ 283 (427)
...+...|++++|+..+++..+.... +...+..+..++...|++++|.+.+++..+....++ ...|..+...|...|
T Consensus 10 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 10 ADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 45567788888888888888876543 556888899999999999999999999988432222 234889999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363 (427)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 363 (427)
++++|...|++..+.... +..+|..+...|...|++++|...+++..+.. +.+..++..+...+...+++++|.+.++
T Consensus 89 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887543 66789999999999999999999999998873 3356677777734444569999999999
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHhcCCCC
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCLHGR---TDEAYHLFEEMAQKG-IFRD------VITYNTLIQGYCKEGKIV 426 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~ 426 (427)
++.+.. +.+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+-..|.+.|+++
T Consensus 167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 999863 2347788888888988888 888999998887642 1233 257888888898888765
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.54 E-value=3.7e-12 Score=116.67 Aligned_cols=248 Identities=8% Similarity=0.023 Sum_probs=196.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR-TDLVWKLYHDLIESGYLIQAFCNDGKVS 216 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~l~~~~~~~g~~~ 216 (427)
...|+.+...+.+.|++++|++.|++..+.... +...|+.+..++...|+ +++|+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl----------------------- 152 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEM----------------------- 152 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHH-----------------------
Confidence 557888999999999999999999999987554 67778877777766654 55554
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
..+++.+..... +...|..+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++.
T Consensus 153 ---~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al 227 (382)
T 2h6f_A 153 ---NYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLL 227 (382)
T ss_dssp ---HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred ---HHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 445555554443 7788999999999999999999999999988543 67899999999999999999999999999
Q ss_pred hCCCCCChhhHHHHHHHHHc-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHC
Q 045814 297 ERGYVPDTVMYTTVIHGLCK-MGWLGDA-----RKMWFEMIHKGLLPNEYTYNSMIHGYCRID--NLEEAKRLHKEMLDK 368 (427)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~ 368 (427)
+.... +...|+.+..++.+ .|..++| +..+++..+.... +...|+.+...+...| ++++|.+.+.++ +.
T Consensus 228 ~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~ 304 (382)
T 2h6f_A 228 KEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP 304 (382)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT
T ss_pred HhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc
Confidence 88655 77899999999998 6665777 5888888886432 5678888888898888 689999999988 43
Q ss_pred CCCCChhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCCH-hHHHHHHHHHH
Q 045814 369 GYGETTVTYNTLIAGLCLHG---------RTDEAYHLFEEM-AQKGIFRDV-ITYNTLIQGYC 420 (427)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~-~~~~~li~~~~ 420 (427)
.+.+...+..+...|.+.| ..++|.++|+++ .+ +.|.. ..|..+...+.
T Consensus 305 -~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 305 -SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp -TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence 3346788889999998874 358999999998 55 34543 45555555544
No 54
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=5.1e-13 Score=124.44 Aligned_cols=277 Identities=12% Similarity=0.031 Sum_probs=192.3
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-H----HhHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCcCHh
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-P----NSLELYIQCLCESGLIEEAFCAFSKLKEM----G-VFGSIK 174 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g-~~p~~~ 174 (427)
...+..+...+...|++++|...+++ ....|+ . ..|..+...|...|++++|.+.|++..+. + ......
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 44555666777888888888888876 222333 2 46778888888888888888888877653 1 112345
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----
Q 045814 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN----- 249 (427)
Q Consensus 175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----- 249 (427)
++..+...|...|++++|...+++..+. ..... .......++..+...|...|+
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~ 186 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTL-------------------ARQLG--DRLSEGRALYNLGNVYHAKGKHLGQR 186 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------HHHhh--chHHHHHHHHHHHHHHHHcCcccccc
Confidence 6666777777777777777776655431 11110 001134467777888888888
Q ss_pred ------------hhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhH
Q 045814 250 ------------FGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMY 307 (427)
Q Consensus 250 ------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~ 307 (427)
+++|.+.+++..+. +..+ ...++..+...|...|++++|...+++..+.... ++ ..++
T Consensus 187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (411)
T 4a1s_A 187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN 266 (411)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 88888888776542 1111 2347778888899999999999999887653211 11 2377
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CC-CCChhhH
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLL-----PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GY-GETTVTY 377 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~ 377 (427)
..+...|...|++++|...+++....... ....++..+...|...|++++|...+++..+. +. .....++
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 346 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC 346 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence 88888999999999999999887754211 11456788888999999999999999988753 11 1124578
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 378 NTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 378 ~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..+...|...|++++|.+.+++..+.
T Consensus 347 ~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 347 WSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88889999999999999999988764
No 55
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.52 E-value=1.2e-12 Score=112.30 Aligned_cols=199 Identities=14% Similarity=0.051 Sum_probs=95.1
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814 139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218 (427)
Q Consensus 139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a 218 (427)
..|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~------------------ 84 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKAL------------------ 84 (243)
T ss_dssp ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence 34445555555555566666555555543222 34444444444444444444443333332
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
.... .+..++..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.
T Consensus 85 --------~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 154 (243)
T 2q7f_A 85 --------ELDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154 (243)
T ss_dssp --------HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred --------HcCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2111 1344555555555555666666666655555432 23445555555666666666666666665544
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
... +...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus 155 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 155 NEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 322 44555556666666666666666666665543 223455666666666666666666666666554
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.52 E-value=3.7e-13 Score=124.85 Aligned_cols=293 Identities=11% Similarity=0.019 Sum_probs=206.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHhc-------CCCC-CHHhHHHHH
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPD--LVSCNVLFDSLVEARAFKVAMDFLDST-------GFSP-NPNSLELYI 145 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~li 145 (427)
....+...+++..|+..|+.+.....-.+. ..++..+...+...|++++|...+++. +..| ...++..+.
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 94 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 94 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 345667789999999999998765211111 357888899999999999999998752 2122 245788899
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHHHHHHHHHHcCC--------------------hhHHHHHHHHHH
Q 045814 146 QCLCESGLIEEAFCAFSKLKEMGVF-GS----IKTWNSALLGCIKIDR--------------------TDLVWKLYHDLI 200 (427)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~ 200 (427)
..|...|++++|...+++..+.... ++ ..++..+...+...|+ +++|...+++..
T Consensus 95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 174 (406)
T 3sf4_A 95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL 174 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999988754211 11 3467777777777777 555555544332
Q ss_pred hcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCC----HhhHHH
Q 045814 201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APD----NFTYEE 274 (427)
Q Consensus 201 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ 274 (427)
+++.. .+..+ ...++..+...+...|++++|...+++..+... .++ ..++..
T Consensus 175 -------------------~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 232 (406)
T 3sf4_A 175 -------------------SLVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 232 (406)
T ss_dssp -------------------HHHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -------------------HHHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 22211 11111 234678888889999999999999988765421 111 237888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CC-CHHHHHH
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL----LP-NEYTYNS 344 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p-~~~~~~~ 344 (427)
+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++..+... .+ ...++..
T Consensus 233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 312 (406)
T 3sf4_A 233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS 312 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 889999999999999999987643111 11 45778888999999999999999998875411 11 1457778
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCH
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLDK----GYG-ETTVTYNTLIAGLCLHGRT 390 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~ 390 (427)
+...|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 313 LGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 888999999999999999987643 211 1245677777788777765
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.52 E-value=6.4e-13 Score=116.35 Aligned_cols=245 Identities=8% Similarity=-0.001 Sum_probs=170.2
Q ss_pred cCChHHHHHHHHHHhhcCCCCC--CHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCChhHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSP--DLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLIEEAF 158 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~ 158 (427)
.++++.|+..|+.+.......+ +..++..+...+...|++++|...|++. ...| +..+|..+...|...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 4678899999999876532222 5678899999999999999999999872 3333 5789999999999999999999
Q ss_pred HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 045814 159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN 238 (427)
Q Consensus 159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 238 (427)
+.|++..+.... +..++..+...+...|++++|...|+.+.+ .. |+.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------------------------~~--~~~~~~~ 148 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--------------------------DD--PNDPFRS 148 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HC--TTCHHHH
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHH--------------------------hC--CCChHHH
Confidence 999999986443 567777777777777766666666655543 21 2323333
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 045814 239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLC 315 (427)
Q Consensus 239 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~ 315 (427)
..+..+...|++++|...+.+..... +++...+ .++..+...++.++|...+.+..+..... +..++..+...|.
T Consensus 149 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 226 (275)
T 1xnf_A 149 LWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL 226 (275)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence 34445566688888888887766653 2233333 46666777778888888888776542211 1467778888888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH 362 (427)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 362 (427)
+.|++++|...++++.... |+. +.....++...|++++|.+.+
T Consensus 227 ~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 227 SLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 8888888888888888753 422 223344566777777776655
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.50 E-value=9.6e-13 Score=118.44 Aligned_cols=274 Identities=11% Similarity=0.014 Sum_probs=181.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhc-CCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-CHhhH
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDST-GFSPN-----PNSLELYIQCLCESGLIEEAFCAFSKLKEM----GVFG-SIKTW 176 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~ 176 (427)
.+......+...|++++|...+++. ...|+ ...+..+...+...|++++|.+.+++..+. +..| ...++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556666777777777777652 22232 345666777777777777777777765432 1111 23445
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCC------
Q 045814 177 NSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKN------ 249 (427)
Q Consensus 177 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~------ 249 (427)
..+...+...|++++|...+++..+. .. ..+.. ....++..+...+...|+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 144 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDI-------------------SR---ELNDKVGEARALYNLGNVYHAKGKSFGCPG 144 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HH---HTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH-------------------HH---HhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence 55555555555555555555443321 00 11100 113467777888888888
Q ss_pred --------------hhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C----Chh
Q 045814 250 --------------FGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-P----DTV 305 (427)
Q Consensus 250 --------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~ 305 (427)
+++|.+.+++.... +..+ ...++..+...+...|++++|...+++..+.... + ...
T Consensus 145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 88888888776542 1111 2346778888899999999999999987643111 1 133
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CC-CCChh
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-PN----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GY-GETTV 375 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~ 375 (427)
++..+...+...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+. +. .....
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 7788888999999999999999988754111 11 456778888999999999999999988653 11 11145
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
++..+...|...|++++|.+.+++..+.
T Consensus 305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 305 ACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7788899999999999999999998874
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.48 E-value=2.1e-12 Score=120.28 Aligned_cols=268 Identities=12% Similarity=0.015 Sum_probs=194.0
Q ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCCCH----hhHHHHHHHHHHcCChHHHHHHHHhc-------CCCC-CHHhHHHHH
Q 045814 78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDL----VSCNVLFDSLVEARAFKVAMDFLDST-------GFSP-NPNSLELYI 145 (427)
Q Consensus 78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~li 145 (427)
..+...+++..|+..|+.+.... +.+. ..+..+...+...|++++|...+++. +..| ...++..+.
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 34557899999999999987652 2233 57888899999999999999998752 2122 345788899
Q ss_pred HHHHhcCChhHHHHHHHHHHhcC-----CCcCHhhHHHHHHHHHHcCC-----------------hhHHHHHHHHHHhcc
Q 045814 146 QCLCESGLIEEAFCAFSKLKEMG-----VFGSIKTWNSALLGCIKIDR-----------------TDLVWKLYHDLIESG 203 (427)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~~ 203 (427)
..|...|++++|.+.|++..+.. ......++..+...+...|+ +++|...+++.
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a---- 209 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN---- 209 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH----
Confidence 99999999999999999887541 11234567777778888888 55555544433
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC----HhhHHHHHHH
Q 045814 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PD----NFTYEEVING 278 (427)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~ 278 (427)
+++..... .......++..+...+...|++++|.+.+++..+.... .+ ..++..+...
T Consensus 210 ---------------l~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 272 (411)
T 4a1s_A 210 ---------------LKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS 272 (411)
T ss_dssp ---------------HHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---------------HHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 22222221 01113347788888899999999999999887664211 11 2377888899
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHH
Q 045814 279 LCKSRKRLEAYRVFNDLKERGYV-----PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LL-PNEYTYNSMIHG 348 (427)
Q Consensus 279 ~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~li~~ 348 (427)
|...|++++|...|++..+.... ....++..+...|...|++++|...+++..... .. ....++..+...
T Consensus 273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 352 (411)
T 4a1s_A 273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA 352 (411)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 99999999999999987653211 124578888899999999999999999887641 11 113477788899
Q ss_pred HhhcCCHHHHHHHHHHHHHC
Q 045814 349 YCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~~ 368 (427)
|...|++++|.+.+++..+.
T Consensus 353 ~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 353 HSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHH
Confidence 99999999999999998764
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=8.6e-11 Score=104.89 Aligned_cols=224 Identities=9% Similarity=0.029 Sum_probs=170.2
Q ss_pred hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCCh-------hHHHHHHHHHHH
Q 045814 155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV-------SEGYELLRQVLE 227 (427)
Q Consensus 155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~-------~~a~~~~~~~~~ 227 (427)
++|..+|++....... +...|..++..+...++ .+...|++ ++|..+|++...
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~-------------------~l~~~g~~~~~~~~~~~A~~~~~rAl~ 92 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSK-------------------LLAEKGDMNNAKLFSDEAANIYERAIS 92 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-------------------HHHHTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhch-------------------hhhhccchhhcccchHHHHHHHHHHHH
Confidence 6788888888876433 67778777766654321 01233443 778888888777
Q ss_pred C-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC-Hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 045814 228 D-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD-NF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304 (427)
Q Consensus 228 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 304 (427)
. ... +...|..++..+.+.|++++|.++|++..+. .|+ .. +|..+...+.+.|++++|..+|++..+.... +.
T Consensus 93 ~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~ 168 (308)
T 2ond_A 93 TLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RH 168 (308)
T ss_dssp TTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CT
T ss_pred HhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CH
Confidence 3 332 5668999999999999999999999999885 343 33 7889999999999999999999999886432 44
Q ss_pred hhHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHH
Q 045814 305 VMYTTVIHGL-CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGE--TTVTYNTL 380 (427)
Q Consensus 305 ~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~l 380 (427)
..|....... ...|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. +.| ....|..+
T Consensus 169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~ 247 (308)
T 2ond_A 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF 247 (308)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 4454333332 23699999999999998763 2357788888999999999999999999999863 454 46788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+..+.+.|+.++|..+++++.+.
T Consensus 248 ~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 248 LAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999998875
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.47 E-value=9.5e-13 Score=117.38 Aligned_cols=245 Identities=13% Similarity=0.027 Sum_probs=163.1
Q ss_pred HHhHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHH
Q 045814 138 PNSLELYIQCLCESGLIEEAFCAFSKLKEM-------GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC 210 (427)
Q Consensus 138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~ 210 (427)
..++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++.+.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------- 97 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA--------- 97 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------
Confidence 456778888888888888888888888763 2233456777788888888888888887665542
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcC
Q 045814 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR------NRAP-DNFTYEEVINGLCKSR 283 (427)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~ 283 (427)
+.+............++..+...+...|++++|.+.+++..+. +..| ....+..+...|...|
T Consensus 98 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 98 ----------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp ----------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred ----------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Confidence 2222221222224567888888999999999999999888764 2222 3457888888999999
Q ss_pred ChHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHH-------HH
Q 045814 284 KRLEAYRVFNDLKER------GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-------GLLPNEY-------TY 342 (427)
Q Consensus 284 ~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~-------~~ 342 (427)
++++|...|+++.+. +..| ...++..+...|...|++++|...++++.+. ...+... .+
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER 247 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence 999999999988664 2122 3457888889999999999999999998763 1111111 12
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 343 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..+...+...+.+.++...++...... +.+..++..+...|...|++++|.++|++..+
T Consensus 248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 248 EECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222333444455666666666665432 23567888999999999999999999998875
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.46 E-value=3.2e-12 Score=115.03 Aligned_cols=271 Identities=11% Similarity=0.032 Sum_probs=192.9
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcCCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHhc-------CCCC-CHHhHHHHHH
Q 045814 77 REFLKQQNNVLLSIRFFQWLHSHYGFSPD--LVSCNVLFDSLVEARAFKVAMDFLDST-------GFSP-NPNSLELYIQ 146 (427)
Q Consensus 77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~li~ 146 (427)
...+...+++..|+..|+.+.....-.+. ...+..+...+...|++++|.+.+++. +..| ...++..+..
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 91 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 91 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 34566789999999999998765211111 467888999999999999999998752 2122 2557888999
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHHHHHHHHHHcCC--------------------hhHHHHHHHHHHh
Q 045814 147 CLCESGLIEEAFCAFSKLKEMGVF-GS----IKTWNSALLGCIKIDR--------------------TDLVWKLYHDLIE 201 (427)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~ 201 (427)
.+...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|...+++..
T Consensus 92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~- 170 (338)
T 3ro2_A 92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL- 170 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 999999999999999987653211 11 3467777777877777 555555544332
Q ss_pred cchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-----CCCHhhHHHHH
Q 045814 202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-----APDNFTYEEVI 276 (427)
Q Consensus 202 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll 276 (427)
.+..... .......++..+...+...|++++|...+++..+... .....++..+.
T Consensus 171 ------------------~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 171 ------------------SLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230 (338)
T ss_dssp ------------------HHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------------HHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 2222211 0011234677788888999999999999988765321 11123778888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHH
Q 045814 277 NGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LL-PNEYTYNSMI 346 (427)
Q Consensus 277 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~li 346 (427)
..+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+++..... .. ....++..+.
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 310 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 310 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 8999999999999999987643111 11 4577888889999999999999999886541 11 1134677888
Q ss_pred HHHhhcCCHHHHHHHHHHHHHC
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
..|...|++++|...+++..+.
T Consensus 311 ~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 311 NAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHcCChHHHHHHHHHHHHH
Confidence 8999999999999999998865
No 63
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.46 E-value=1.9e-11 Score=100.12 Aligned_cols=171 Identities=11% Similarity=0.013 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
+...|..+...|...|++++|++.|++..+..+. +..++..+...|.+.|++++|...+......... +...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 5678999999999999999999999999887533 6778899999999999999999999998877544 5667788888
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (427)
.+...++++.|...+.+...... -+...+..+...|.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence 89999999999999999888643 3577888889999999999999999999988642 367889999999999999999
Q ss_pred HHHHHHHHHHCCCCCCH
Q 045814 393 AYHLFEEMAQKGIFRDV 409 (427)
Q Consensus 393 A~~~~~~m~~~g~~p~~ 409 (427)
|.+.|++..+. .|+.
T Consensus 160 A~~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 160 AVKYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHHHT--THHH
T ss_pred HHHHHHHHHhC--CccC
Confidence 99999999874 4543
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.44 E-value=3.7e-11 Score=110.82 Aligned_cols=234 Identities=8% Similarity=-0.055 Sum_probs=160.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhc----CCCc-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814 144 YIQCLCESGLIEEAFCAFSKLKEM----GVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG 218 (427)
Q Consensus 144 li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a 218 (427)
....+...|++++|...|++..+. +-.+ ...++..+...+...|++++|...+++..+
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~----------------- 171 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE----------------- 171 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence 344556677777777777776543 1111 234555555666666666666555544332
Q ss_pred HHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC----CC-CHhhHHHHHHHHHhcCChHHHHHH
Q 045814 219 YELLRQVLEDGL--VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----AP-DNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 219 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
++.. .+. .....+++.+...|...|++++|.+.+++..+... .+ ...++..+...|...|++++|...
T Consensus 172 --~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 172 --IYKE---HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp --HHHT---CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred --HHHh---CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 1111 110 01235788888999999999999999988775421 11 124788899999999999999999
Q ss_pred HHHHHhC----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhcCC---HHHHH
Q 045814 292 FNDLKER----GY-VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNEYTYNSMIHGYCRIDN---LEEAK 359 (427)
Q Consensus 292 ~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~ 359 (427)
|++..+. +. .....++..+...|.+.|++++|...+++..+. +.......+..+...|...|+ +++|.
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9998762 22 224567888999999999999999999988754 111122345677888889998 77777
Q ss_pred HHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 360 RLHKEMLDKGYGE-TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 360 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.++++. +..| ....+..+...|...|++++|.+.+++..+
T Consensus 327 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777665 2222 345677888999999999999999998865
No 65
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.41 E-value=1.3e-10 Score=109.62 Aligned_cols=307 Identities=11% Similarity=0.029 Sum_probs=131.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCCh---HHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESG 152 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~li~~~~~~~ 152 (427)
+.......+++..|++.|..+... | +...+..+...+...|+. ++|..+|++.--. ++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC-----------------------------CHHHHHHHHHTC-
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCC
Confidence 344455667778888888777543 2 334444555555566666 7788887774322 6666666666555544
Q ss_pred -----ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChh---HHHHHHHHHHhcc------hhHHHHHhcCChhHH
Q 045814 153 -----LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---LVWKLYHDLIESG------YLIQAFCNDGKVSEG 218 (427)
Q Consensus 153 -----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~------~l~~~~~~~g~~~~a 218 (427)
++++|...|++..+.|.. ..+..|...|...+..+ .+.+.+......+ .+...|...+.++++
T Consensus 84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 667788888877775533 25555666665544322 2333333333222 133344444433333
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----CChHHHHHH
Q 045814 219 YELLRQVLEDGLVPENTAFNKLISRFCEKK---NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS----RKRLEAYRV 291 (427)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~ 291 (427)
......+...-...+...+..|...|...| +.++|++.|++..+.|. ++...+..+...|... +++++|...
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 332222221111112224444555555555 55555555555555442 2233333333444332 455555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-----CHHHHHHHHH
Q 045814 292 FNDLKERGYVPDTVMYTTVIHG-L--CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-----NLEEAKRLHK 363 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~ 363 (427)
|++.. .| +...+..+... + ...++.++|...|++..+.| +...+..+...|. .| ++++|.+.|+
T Consensus 240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 55544 21 23333333333 2 23455555555555555444 3334444444443 23 5555555555
Q ss_pred HHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~ 403 (427)
+.. .| +...+..|...|.. ..+.++|.+.|++..+.
T Consensus 312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 544 21 34444444444433 22455555555554443
No 66
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.40 E-value=4.2e-11 Score=113.56 Aligned_cols=191 Identities=9% Similarity=-0.058 Sum_probs=131.0
Q ss_pred hHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-
Q 045814 205 LIQAFCNDGKV-SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS- 282 (427)
Q Consensus 205 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~- 282 (427)
+...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|++..+.. |+...+..+...|...
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~ 184 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQ 184 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCC
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhc
Confidence 55566677777 7777777777765433 56677777777777777777777777777663 4456677777777777
Q ss_pred --------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 045814 283 --------RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM--------GWLGDARKMWFEMIHKGLL--PNEYTYNS 344 (427)
Q Consensus 283 --------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~ 344 (427)
|++++|...|++..+.... +...|..+..+|... |++++|...|++..+.... -+...|..
T Consensus 185 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 263 (474)
T 4abn_A 185 TDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263 (474)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH
T ss_pred cCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence 7777777777777665433 566777777777776 7777777777777765310 25666777
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (427)
+..+|...|++++|.+.|++..+... -+...+..+...+...|++++|.+.+.++
T Consensus 264 lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 264 RATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777777777777777777766532 24556677777777777777777655444
No 67
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.39 E-value=2.9e-10 Score=104.30 Aligned_cols=271 Identities=8% Similarity=-0.030 Sum_probs=144.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHh-cCCCC--CH----HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHH
Q 045814 110 NVLFDSLVEARAFKVAMDFLDS-TGFSP--NP----NSLELYIQCLCESGLIEEAFCAFSKLKEMGVF-GS----IKTWN 177 (427)
Q Consensus 110 ~~ll~~~~~~~~~~~a~~~~~~-~~~~~--~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~ 177 (427)
......+...|++++|...+++ ....| +. .+++.+...+...|++++|.+.+++....... .+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 3344455677888888888775 11112 11 24566667777788888888888776643111 11 12244
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCChhHHH
Q 045814 178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV--P-ENTAFNKLISRFCEKKNFGRVS 254 (427)
Q Consensus 178 ~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~ 254 (427)
.+...+...|++++|...+++.... ....+.. | ....+..+...+...|++++|.
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~----------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQL----------------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE 155 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHH----------------------HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence 4555556666666666655544321 0011111 1 2234455566666677777777
Q ss_pred HHHHHHhhCCCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHccCCHHHHH
Q 045814 255 ELLHTMVARNRAP----DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT-VMYT-----TVIHGLCKMGWLGDAR 324 (427)
Q Consensus 255 ~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~g~~~~a~ 324 (427)
..+++........ ...++..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|.
T Consensus 156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 235 (373)
T 1hz4_A 156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA 235 (373)
T ss_dssp HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence 7776655432211 1234555666666777777777777666433111111 1111 1223355667777777
Q ss_pred HHHHHHHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 045814 325 KMWFEMIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGETT-VTYNTLIAGLCLHGRTDEAYHL 396 (427)
Q Consensus 325 ~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~ 396 (427)
..+++.......+. ...+..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 315 (373)
T 1hz4_A 236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV 315 (373)
T ss_dssp HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 77766654321111 123455556666777777777776665432 211122 2445555666677777777776
Q ss_pred HHHHHH
Q 045814 397 FEEMAQ 402 (427)
Q Consensus 397 ~~~m~~ 402 (427)
+++...
T Consensus 316 l~~al~ 321 (373)
T 1hz4_A 316 LLDALK 321 (373)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 68
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=1.4e-10 Score=94.93 Aligned_cols=167 Identities=11% Similarity=-0.037 Sum_probs=96.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS 216 (427)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~ 216 (427)
++..|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...++..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~----------------- 65 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKF----------------- 65 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence 4556667777777777777777777777665433 4555555555555544444444443333
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
...... +...+..+...+...++++.+...+.+...... .+...+..+...|.+.|++++|++.|++..
T Consensus 66 ---------~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l 134 (184)
T 3vtx_A 66 ---------VVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTI 134 (184)
T ss_dssp ---------HHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------HhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 222222 344555555556666666666666666555432 244555666666666666666666666665
Q ss_pred hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
+.... +..+|..+..+|.+.|++++|...|++..+.
T Consensus 135 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 135 SIKPG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred Hhcch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 54332 4455666666666666666666666666553
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.37 E-value=4.9e-10 Score=99.95 Aligned_cols=215 Identities=13% Similarity=0.074 Sum_probs=146.0
Q ss_pred HHHHHHHHhc-CC-CCCHHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHh-cCCCcCHhhHHHHHHHHHH
Q 045814 123 KVAMDFLDST-GF-SPNPNSLELYIQCLC-------ESGLI-------EEAFCAFSKLKE-MGVFGSIKTWNSALLGCIK 185 (427)
Q Consensus 123 ~~a~~~~~~~-~~-~~~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~ 185 (427)
++|...|++. .. +.++..|..++..+. +.|++ ++|..+|++..+ .... +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHh
Confidence 4555566552 21 335667777766665 34775 788888888887 3322 55577776666666
Q ss_pred cCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHccCChhHHHHHHHHHhhC
Q 045814 186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENT-AFNKLISRFCEKKNFGRVSELLHTMVAR 263 (427)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~ 263 (427)
.|++++|..+|++++ .. .| +.. .|..+...+.+.|++++|..+|++..+.
T Consensus 112 ~~~~~~A~~~~~~al--------------------------~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 112 RMKYEKVHSIYNRLL--------------------------AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 163 (308)
T ss_dssp TTCHHHHHHHHHHHH--------------------------TS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHHH--------------------------hc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 665555555555443 32 22 232 6788888888888888888888888876
Q ss_pred CCCCCHhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC--CH
Q 045814 264 NRAPDNFTYEEVINGLC-KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLP--NE 339 (427)
Q Consensus 264 ~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~ 339 (427)
.. .+...|........ ..|++++|..+|++..+.... +...|..++..+.+.|++++|..+|++..... ..| ..
T Consensus 164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~ 241 (308)
T 2ond_A 164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241 (308)
T ss_dssp TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence 43 23344443333322 368889999999888765332 56788888888888899999999999988863 344 35
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
..|..++..+.+.|+.+.|..+++++.+.
T Consensus 242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 242 EIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 67788888888889999999988888765
No 70
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=4e-10 Score=103.70 Aligned_cols=165 Identities=10% Similarity=0.043 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCC
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKE-----RGYVPD 303 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~p~ 303 (427)
..+++.+...|...|++++|.+.+++..+. +..+ ...++..+...|...|++++|...|++..+ .... .
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence 457888889999999999999999887653 1111 235778888999999999999999999876 4332 3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCC-Chh
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL----LPNEYTYNSMIHGYCRIDN---LEEAKRLHKEMLDKGYGE-TTV 375 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~ 375 (427)
..++..+...+.+.|++++|...+++..+... ......+..+...|...|+ +.+|..+++. .+..| ...
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~ 337 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEA 337 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHH
Confidence 66788889999999999999999999887521 2223456666667778888 7777777766 22222 245
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.+..+...|...|++++|.+.|++..+
T Consensus 338 ~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 338 CARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 667888999999999999999998765
No 71
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.35 E-value=4.8e-11 Score=113.20 Aligned_cols=213 Identities=10% Similarity=-0.002 Sum_probs=164.2
Q ss_pred hHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 045814 122 FKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLI-EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD 198 (427)
Q Consensus 122 ~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 198 (427)
++.+...+++. ...| +...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~---------- 152 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGD---------- 152 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC----------
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCC----------
Confidence 55666666552 2233 567788888888888888 8888888888776433 46666666665555555
Q ss_pred HHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---------CChhHHHHHHHHHhhCCCCCCH
Q 045814 199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK---------KNFGRVSELLHTMVARNRAPDN 269 (427)
Q Consensus 199 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~ 269 (427)
+++|.+.|++.... .|+...+..+...+... |++++|.+.+++..+... .+.
T Consensus 153 ----------------~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~ 213 (474)
T 4abn_A 153 ----------------VTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDG 213 (474)
T ss_dssp ----------------HHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred ----------------HHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCH
Confidence 45555555555554 36678899999999999 999999999999998753 367
Q ss_pred hhHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 045814 270 FTYEEVINGLCKS--------RKRLEAYRVFNDLKERGYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339 (427)
Q Consensus 270 ~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 339 (427)
..|..+..+|... |++++|...|++..+.... -+...|..+..+|...|++++|...|++..+... -+.
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~ 292 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH
Confidence 8899999999998 9999999999999886431 2778999999999999999999999999998742 256
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 340 YTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
..+..+...+...|++++|.+.+..+
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 67888888999999999888766544
No 72
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.34 E-value=5.9e-11 Score=109.45 Aligned_cols=231 Identities=7% Similarity=-0.087 Sum_probs=165.2
Q ss_pred HHHHHHHcCChHHHHHHHHhc-CC---CCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------cCHhhHH
Q 045814 112 LFDSLVEARAFKVAMDFLDST-GF---SPN----PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF------GSIKTWN 177 (427)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~~-~~---~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~------p~~~~~~ 177 (427)
....+...|++++|...+++. .. .++ ..++..+...|...|++++|...+.+..+.-.. ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 455667899999999999873 21 233 457889999999999999999999988754111 1234667
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHH
Q 045814 178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSEL 256 (427)
Q Consensus 178 ~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 256 (427)
.+...|...|++++|...|++..+ +... .+-. ....++..+...|...|++++|.+.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~-------------------~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~ 246 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYS-------------------MAEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-------------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHH-------------------HHHH---cCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 777777777777777777665442 1111 1111 1224678888899999999999999
Q ss_pred HHHHhhC----CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCC---HHHHH
Q 045814 257 LHTMVAR----NR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG----YVPDTVMYTTVIHGLCKMGW---LGDAR 324 (427)
Q Consensus 257 ~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~ 324 (427)
+++..+. +. +....++..+...|.+.|++++|...+++..+.. -......+..+...+...|+ .++|.
T Consensus 247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al 326 (383)
T 3ulq_A 247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF 326 (383)
T ss_dssp HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 9988762 22 2235678889999999999999999999876531 11122345677788888898 77777
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 325 KMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 325 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
.++++. +..|+ ...+..+...|...|++++|...+++..+
T Consensus 327 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 327 DFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 777665 32333 34677788899999999999999998765
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.34 E-value=1.1e-11 Score=110.46 Aligned_cols=244 Identities=12% Similarity=0.050 Sum_probs=160.3
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHhc-C---------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDST-G---------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM------G 168 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g 168 (427)
+..++..+...+...|++++|...+++. . ......++..+...|...|++++|...|++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567788888899999999999988762 1 1223557888999999999999999999988764 1
Q ss_pred C-CcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 045814 169 V-FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK 247 (427)
Q Consensus 169 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 247 (427)
- .....++..+...+...|++++|...++++.+ +.+.............+..+...+...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------------------~~~~~~~~~~~~~~~~~~~la~~~~~~ 166 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-------------------IREKVLGKDHPDVAKQLNNLALLCQNQ 166 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------HHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------------------HHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence 1 22356677777788888888888777765543 222221111122455778888899999
Q ss_pred CChhHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCChh-------h
Q 045814 248 KNFGRVSELLHTMVAR------NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKER-------GYVPDTV-------M 306 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-------~ 306 (427)
|++++|.+.++++.+. +..| ...++..+...|...|++++|...++++.+. ...+... .
T Consensus 167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 246 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence 9999999999888764 2222 2357888889999999999999999988753 1112222 1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+..+...+...+.+.++...+....... ..+..++..+..+|.+.|++++|.+++++..+.
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2222233334455666666666665542 234567888999999999999999999988753
No 74
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.34 E-value=4.9e-10 Score=105.54 Aligned_cols=298 Identities=8% Similarity=-0.041 Sum_probs=197.0
Q ss_pred ChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcC-----ChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhH---
Q 045814 85 NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR-----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE--- 156 (427)
Q Consensus 85 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--- 156 (427)
+...|+..|+.+... ++..+..+...+...+ ++++|..+|++.-..-+...+..|...|...+..+.
T Consensus 53 d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~ 127 (452)
T 3e4b_A 53 QIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN 127 (452)
T ss_dssp -----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC
T ss_pred CHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH
Confidence 338888888887532 6667777777555554 778999999873222234477788888877665444
Q ss_pred HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHH----HHHHHHHhcc-----hhHHHHHhcC---ChhHHHHHHHH
Q 045814 157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW----KLYHDLIESG-----YLIQAFCNDG---KVSEGYELLRQ 224 (427)
Q Consensus 157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~----~~~~~~~~~~-----~l~~~~~~~g---~~~~a~~~~~~ 224 (427)
+.+.+......| +...+..|...|...+.++.+. .+++.....+ .+...|...| +.++|++.|++
T Consensus 128 a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~ 204 (452)
T 3e4b_A 128 AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEA 204 (452)
T ss_dssp HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 445555554443 3556777778888877554444 4444443332 3666777788 89999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc----CChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-H--HhcCChHHHHHHHHHHHh
Q 045814 225 VLEDGLVPENTAFNKLISRFCEK----KNFGRVSELLHTMVARNRAPDNFTYEEVING-L--CKSRKRLEAYRVFNDLKE 297 (427)
Q Consensus 225 ~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~m~~ 297 (427)
..+.|.. +...+..|...|... +++++|.+.|++.. .| +...+..+... | ...+++++|...|++..+
T Consensus 205 aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 205 GVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp HHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred HHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 9888754 555556677777654 78999999999887 33 44566666665 4 468899999999999988
Q ss_pred CCCCCChhhHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHC
Q 045814 298 RGYVPDTVMYTTVIHGLCKMG-----WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 298 ~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 368 (427)
.| +...+..+...|. .| ++++|...|++.. .| +...+..+...|.. ..++++|...|+...+.
T Consensus 280 ~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 280 AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 76 5667777777776 55 8999999999887 43 55667777766665 34899999999999887
Q ss_pred CCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045814 369 GYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGIF 406 (427)
Q Consensus 369 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 406 (427)
| +......|...|.. ..+.++|...|+...+.|..
T Consensus 352 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 352 G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 6 44556667777764 45888999999888877643
No 75
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.32 E-value=2.5e-10 Score=93.02 Aligned_cols=166 Identities=10% Similarity=-0.020 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (427)
...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.... +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 34567777888889999999999988876542 35678888888899999999999999998776432 66788888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (427)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988764 3367788888889999999999999999988763 33678888899999999999999
Q ss_pred HHHHHHHHHC
Q 045814 394 YHLFEEMAQK 403 (427)
Q Consensus 394 ~~~~~~m~~~ 403 (427)
.+.+++..+.
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 9999988764
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=9.4e-11 Score=102.64 Aligned_cols=217 Identities=14% Similarity=0.074 Sum_probs=105.7
Q ss_pred HcCChhHHHHHHHHHHhc----------------chhHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 045814 185 KIDRTDLVWKLYHDLIES----------------GYLIQAFCNDGKVSEGYELLRQVLED------GLVP-ENTAFNKLI 241 (427)
Q Consensus 185 ~~~~~~~a~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li 241 (427)
..|++++|...|++.++. ..+...|...|++++|...+++.... +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666665544431 12445555556666666666555432 1111 233555555
Q ss_pred HHHHccCChhHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-ChhhH
Q 045814 242 SRFCEKKNFGRVSELLHTMVAR------NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKER------GYVP-DTVMY 307 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~ 307 (427)
..+...|++++|.+.+++..+. ...| ...++..+...|...|++++|...|+++.+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 5556666666666666555443 1011 2344555555555666666666666555433 1011 23345
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHhhcCC------HHHHHHHHHHHHHCCCCCC
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHK-------GLLPNE-YTYNSMIHGYCRIDN------LEEAKRLHKEMLDKGYGET 373 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~ 373 (427)
..+...|...|++++|...++++.+. ...+.. ..+..+...+...+. +..+...++.... ..+..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 251 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV 251 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence 55555555666666666666555442 111111 112222222222111 1111111111110 11123
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..++..+...|...|++++|.++|++..+
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788888999999999999999998765
No 77
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.27 E-value=2.4e-10 Score=113.00 Aligned_cols=166 Identities=13% Similarity=0.008 Sum_probs=141.2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
+..+|+.|...+.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|+..|++..+.... +...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4568899999999999999999999998887432 5678999999999999999999999999887543 5778999999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814 313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (427)
+|.+.|++++|++.|++..+.... +..+|+.+..+|...|++++|.+.|++..+.... +...|..+...|...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999887422 5778999999999999999999999999886422 57888999999999999999
Q ss_pred HHHHHHHHHH
Q 045814 393 AYHLFEEMAQ 402 (427)
Q Consensus 393 A~~~~~~m~~ 402 (427)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887755
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.27 E-value=2.9e-09 Score=97.56 Aligned_cols=267 Identities=11% Similarity=-0.025 Sum_probs=177.4
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCCCCH----hhHHHHHHHHHHcCChHHHHHHHHhc----CCCCCH----HhHHHHHH
Q 045814 79 FLKQQNNVLLSIRFFQWLHSHYGFSPDL----VSCNVLFDSLVEARAFKVAMDFLDST----GFSPNP----NSLELYIQ 146 (427)
Q Consensus 79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~----~~~~~li~ 146 (427)
+....+++..|...++....... ..+. .+++.+...+...|++++|...+++. ....+. .++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44567999999999999866432 1122 25666777888999999999998762 111222 34677888
Q ss_pred HHHhcCChhHHHHHHHHHHhcC----CC--c-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814 147 CLCESGLIEEAFCAFSKLKEMG----VF--G-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219 (427)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~g----~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (427)
.+...|++++|.+.+++..+.. .. | ....+..+...+...|++++|...+++.....
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------- 165 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL---------------- 165 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----------------
Confidence 8999999999999999887532 11 2 23345556666666666666666655443210
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHH----HHHHHHHhcCChHHHHHHHH
Q 045814 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYE----EVINGLCKSRKRLEAYRVFN 293 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~ 293 (427)
...+......++..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++
T Consensus 166 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 239 (373)
T 1hz4_A 166 ------SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239 (373)
T ss_dssp ------TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0011111234677788888899999999999988765422211 11111 23344778999999999998
Q ss_pred HHHhCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 294 DLKERGYVPD---TVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 294 ~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
+.......+. ...+..+...+...|++++|...+++.... |..++. .++..+..++...|+.++|...+++.
T Consensus 240 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 240 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8865432211 224567778888999999999999887643 222222 25666777888999999999999887
Q ss_pred HHC
Q 045814 366 LDK 368 (427)
Q Consensus 366 ~~~ 368 (427)
...
T Consensus 320 l~~ 322 (373)
T 1hz4_A 320 LKL 322 (373)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.26 E-value=9.2e-10 Score=101.24 Aligned_cols=218 Identities=9% Similarity=-0.075 Sum_probs=159.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-----CC-CHhhHHH
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGL-VP----ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-----AP-DNFTYEE 274 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~-~~~~~~~ 274 (427)
...+...|++++|...+++...... .+ ...++..+...|...|+++.|...+++..+... .+ ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3445677888888888888775321 12 245788888999999999999999988765311 11 2457888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKER----GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNEYTYNSM 345 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l 345 (427)
+...|...|++++|...|++..+. +..+ ...++..+...|...|++++|...+++..+. +.+....++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 999999999999999999988653 2111 2347788899999999999999999998872 222236778889
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDKG----YGETTVTYNTLIAGLCLHGR---TDEAYHLFEEMAQKGIFRD-VITYNTLIQ 417 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li~ 417 (427)
...|.+.|++++|...+++..+.. -+.....+..+...|...|+ +.+|+.++++ .+..|+ ...+..+..
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence 999999999999999999988642 11123455666667777888 7777777776 333333 346667888
Q ss_pred HHHhcCCCC
Q 045814 418 GYCKEGKIV 426 (427)
Q Consensus 418 ~~~~~g~~~ 426 (427)
.|.+.|+++
T Consensus 345 ~y~~~g~~~ 353 (378)
T 3q15_A 345 VFESSCHFE 353 (378)
T ss_dssp HHHHTTCHH
T ss_pred HHHHCCCHH
Confidence 888888764
No 80
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=6.1e-10 Score=90.69 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=129.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
...+...|++++|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 15 GISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp HHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence 3445556666666666666655433 267788889999999999999999999988774 33567888889999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.++..
T Consensus 93 ~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 93 DLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998876433 67788888999999999999999999998874 335778888999999999999999999988
Q ss_pred HHC
Q 045814 366 LDK 368 (427)
Q Consensus 366 ~~~ 368 (427)
.+.
T Consensus 171 ~~~ 173 (186)
T 3as5_A 171 NEL 173 (186)
T ss_dssp HHH
T ss_pred HHc
Confidence 764
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.9e-09 Score=91.50 Aligned_cols=194 Identities=8% Similarity=-0.025 Sum_probs=117.4
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
....+...|++++|+..|++.......++...+..+..++...|++++|.+.+++..+.... +...+..+...|...|+
T Consensus 13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~ 91 (228)
T 4i17_A 13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKN 91 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHccc
Confidence 34456667777777777777776554345566666677777777777777777777665322 44566677777777777
Q ss_pred hHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCC
Q 045814 285 RLEAYRVFNDLKERGYVPDT-------VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHGYCRIDN 354 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~ 354 (427)
+++|...|++..+.... +. ..|..+...+...|++++|...++++.+. .|+ ...+..+..+|...
T Consensus 92 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~-- 166 (228)
T 4i17_A 92 NQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNN-- 166 (228)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHH--
Confidence 77777777777665322 23 34566666666777777777777777664 343 34455555555433
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412 (427)
Q Consensus 355 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 412 (427)
+..+++.+...+. .+...|..... ...+.+++|...+++..+. .|+....
T Consensus 167 ---~~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~ 216 (228)
T 4i17_A 167 ---GADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEI 216 (228)
T ss_dssp ---HHHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred ---HHHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence 3334444444321 13333333332 2345569999999999885 4554433
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.22 E-value=3.1e-10 Score=99.28 Aligned_cols=163 Identities=15% Similarity=0.073 Sum_probs=112.8
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC------CCCC-CHh
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLED------GL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR------NRAP-DNF 270 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~ 270 (427)
+...|...|++++|.+.+++.... .. .....++..+...+...|++++|...+++..+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 677889999999999999998864 11 224668888999999999999999999988775 1122 346
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCChh-hHHHHHHHHHccCCHH------HHHHHHHHHHHcCCC
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKER-------GYVPDTV-MYTTVIHGLCKMGWLG------DARKMWFEMIHKGLL 336 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~ 336 (427)
++..+...|...|++++|...+++..+. ...+... .|..+...+...+... .+...++.... ...
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7889999999999999999999998753 1222322 3333333333333322 22222222111 111
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
....++..+...|...|++++|..++++..+.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23457888899999999999999999988753
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1.1e-09 Score=108.36 Aligned_cols=154 Identities=12% Similarity=0.037 Sum_probs=118.6
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY 289 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 289 (427)
.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|++.|++..+.... +...|..+...|.+.|++++|+
T Consensus 20 ~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~ 97 (723)
T 4gyw_A 20 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGAL 97 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence 3344444444444444443322 5678888889999999999999999988877432 5678888999999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+.|++..+.... +...|+.+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|.+.+++..+
T Consensus 98 ~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 98 QCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999998876543 5678888999999999999999999998886422 467888888999999999988888887654
No 84
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.12 E-value=1.7e-07 Score=91.76 Aligned_cols=190 Identities=15% Similarity=0.060 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHHccCChhHHH-HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CC
Q 045814 233 ENTAFNKLISRFCEKKNFGRVS-ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY---------VP 302 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------~p 302 (427)
....|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|..+|+++.+... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 3344445555555666667775 777777654 233455566666677777777777777777765310 12
Q ss_pred C------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 303 D------------TVMYTTVIHGLCKMGWLGDARKMWFEMIHK-G-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 303 ~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+ ...|...+....+.|..+.|..+|.++.+. + ..+......+.+... ..++.+.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence 1 235666666666777777777777777765 2 112222222222211 124477777777777765
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCC
Q 045814 369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR--DVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 369 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~ 425 (427)
++-+...|...++.....|+.+.|..+|++.......+ ....|...++--.+.|+.
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~ 557 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL 557 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence 44456666677777777777777777777777653321 234666666666666654
No 85
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.12 E-value=2.7e-08 Score=86.87 Aligned_cols=179 Identities=12% Similarity=0.059 Sum_probs=125.3
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLK 296 (427)
Q Consensus 218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 296 (427)
|+..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455666665544 34556666778888888999999999988876654 2245677888888999999999999999887
Q ss_pred hCCCCC-----ChhhHHHHHHHHH--ccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 297 ERGYVP-----DTVMYTTVIHGLC--KMG--WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 297 ~~~~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+. .| +..+...+..++. ..| +..+|..+|+++... .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 34 2455555665533 233 788999999998665 45533444445578888999999999887654
Q ss_pred CC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 368 KG---------YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 368 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.. -+-|+.++..+|......|+ +|.++++++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 12356677566666666676 788888888875
No 86
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=1.2e-08 Score=86.42 Aligned_cols=192 Identities=9% Similarity=-0.033 Sum_probs=116.0
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHH
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFS--PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL 181 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 181 (427)
|+..+......+.+.|++++|.+.|++ .... ++...+..+..++...|++++|++.|++..+.... +...|..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence 456666666666677777777777665 1212 45555555666677777777777777766664333 3445555555
Q ss_pred HHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChhHHH
Q 045814 182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-------TAFNKLISRFCEKKNFGRVS 254 (427)
Q Consensus 182 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~ 254 (427)
++...|++++|... +++....... +. ..|..+...+...|++++|.
T Consensus 85 ~~~~~~~~~~A~~~--------------------------~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 137 (228)
T 4i17_A 85 AYRDMKNNQEYIAT--------------------------LTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAE 137 (228)
T ss_dssp HHHHTTCHHHHHHH--------------------------HHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcccHHHHHHH--------------------------HHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence 55555555444444 4444443221 23 35777777888889999999
Q ss_pred HHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814 255 ELLHTMVARNRAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331 (427)
Q Consensus 255 ~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 331 (427)
+.|++..+. .|+ ...+..+...|... +...++++...+.. +...|.... ....+.+++|...+++..
T Consensus 138 ~~~~~al~~--~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~ 207 (228)
T 4i17_A 138 ENYKHATDV--TSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAV 207 (228)
T ss_dssp HHHHHHTTS--SCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 999888776 343 45666666666543 34445555554322 334444333 233466899999999998
Q ss_pred HcC
Q 045814 332 HKG 334 (427)
Q Consensus 332 ~~~ 334 (427)
+..
T Consensus 208 ~l~ 210 (228)
T 4i17_A 208 TLS 210 (228)
T ss_dssp HHC
T ss_pred hcC
Confidence 863
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.10 E-value=4.9e-09 Score=92.66 Aligned_cols=206 Identities=9% Similarity=-0.028 Sum_probs=142.3
Q ss_pred hhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhC
Q 045814 189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED----GLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVAR 263 (427)
Q Consensus 189 ~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 263 (427)
+++|...|+.. ...|...|++++|.+.|.+.... |-.+ ...+|+.+..+|.+.|++++|...+++..+.
T Consensus 33 ~~~A~~~~~~a------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 106 (292)
T 1qqe_A 33 FEEAADLCVQA------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI 106 (292)
T ss_dssp HHHHHHHHHHH------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 55555555544 23455566666666666655432 2111 1457888999999999999999999887654
Q ss_pred CC---CC--CHhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 264 NR---AP--DNFTYEEVINGLCKS-RKRLEAYRVFNDLKERGYVP-D----TVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 264 ~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
.. .+ -..+++.+...|... |++++|...|++..+..... + ..++..+...+.+.|++++|...+++..+
T Consensus 107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 21 11 135788888999996 99999999999986542110 1 34688889999999999999999999998
Q ss_pred cCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHH--hcCCHHHHHHHHH
Q 045814 333 KGLLPNE------YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET------TVTYNTLIAGLC--LHGRTDEAYHLFE 398 (427)
Q Consensus 333 ~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~--~~g~~~~A~~~~~ 398 (427)
....... .+|..+..++...|++++|...|++..+. .|+ ...+..++.+|. ..+++++|++.|+
T Consensus 187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 6433222 15677788899999999999999998764 232 123455566664 4567888888887
Q ss_pred HHHH
Q 045814 399 EMAQ 402 (427)
Q Consensus 399 ~m~~ 402 (427)
++..
T Consensus 265 ~~~~ 268 (292)
T 1qqe_A 265 NFMR 268 (292)
T ss_dssp TSSC
T ss_pred cCCc
Confidence 7654
No 88
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=8.5e-09 Score=78.86 Aligned_cols=129 Identities=13% Similarity=0.151 Sum_probs=79.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 045814 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351 (427)
Q Consensus 272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 351 (427)
|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 445555666666666666666666554322 44555566666666666666666666666553 2244556666666667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 352 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 777777777777666542 224556666667777777777777777766653
No 89
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.08 E-value=2.4e-08 Score=88.20 Aligned_cols=212 Identities=12% Similarity=0.025 Sum_probs=146.2
Q ss_pred ChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCcC-HhhHHHHHHHHHHcCChhHHHHH
Q 045814 121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM----GVFGS-IKTWNSALLGCIKIDRTDLVWKL 195 (427)
Q Consensus 121 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~ 195 (427)
++++|.+.+++. ...|...|++++|.+.|.+..+. |-.++ ..+|+.+..+|.+.|++++|...
T Consensus 32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 99 (292)
T 1qqe_A 32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS 99 (292)
T ss_dssp HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777777665 45677889999999998877653 22222 46788888888888888888888
Q ss_pred HHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHhhCCCCC-C----H
Q 045814 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK-KNFGRVSELLHTMVARNRAP-D----N 269 (427)
Q Consensus 196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~ 269 (427)
|++.++. +...|+...+ ..+++.+...|... |++++|+..|++..+..... + .
T Consensus 100 ~~~Al~l------~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 100 LENAIQI------FTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHH------HHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHH------HHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 7766542 2223332222 23577778888886 99999999998877642111 1 3
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV------MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE---- 339 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---- 339 (427)
.++..+...|.+.|++++|...|++..+........ .|..+..++...|++++|...+++..+. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 467888899999999999999999998765432221 4677778888999999999999998764 2321
Q ss_pred --HHHHHHHHHHh--hcCCHHHHHHHHHHHHH
Q 045814 340 --YTYNSMIHGYC--RIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 340 --~~~~~li~~~~--~~g~~~~a~~~~~~m~~ 367 (427)
..+..++.+|. ..+++++|...|+.+..
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 13444556664 45678888888876654
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.03 E-value=2e-08 Score=76.73 Aligned_cols=130 Identities=12% Similarity=0.142 Sum_probs=96.9
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (427)
.|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+.. +...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence 456677777778888888888887776542 25567777777788888888888888887765432 5567777788888
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
..|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888887764 235667777788888888888888888887764
No 91
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.03 E-value=1.4e-06 Score=85.24 Aligned_cols=210 Identities=11% Similarity=0.071 Sum_probs=156.8
Q ss_pred hHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC---------CCC------
Q 045814 205 LIQAFCNDGKVSEGY-ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---------APD------ 268 (427)
Q Consensus 205 l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~~~------ 268 (427)
.+..+...|+.++|. ++|++....- +.+...|-..+....+.|+++.|.++|+.+..... .|+
T Consensus 349 ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~ 427 (679)
T 4e6h_A 349 MANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN 427 (679)
T ss_dssp HHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence 344455678888997 9999998743 33666777888888899999999999999886410 132
Q ss_pred ------HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHH
Q 045814 269 ------NFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKM-GWLGDARKMWFEMIHKGLLPNEY 340 (427)
Q Consensus 269 ------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~ 340 (427)
..+|...++...+.|..+.|..+|.+..+. +. .....|...+..-.+. ++.+.|..+|+...+. ..-+..
T Consensus 428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~ 505 (679)
T 4e6h_A 428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGE 505 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHH
T ss_pred hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchH
Confidence 236888888888899999999999999876 22 1233443333333344 4589999999999887 333566
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE--TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG 418 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 418 (427)
.+...+......|+.+.|..+|++.......+ ....|...+..-.+.|+.+.+.++.+++.+. .|+......+++-
T Consensus 506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r 583 (679)
T 4e6h_A 506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK 583 (679)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence 67788888888999999999999998764321 3568999999889999999999999999986 4555555555554
Q ss_pred H
Q 045814 419 Y 419 (427)
Q Consensus 419 ~ 419 (427)
|
T Consensus 584 y 584 (679)
T 4e6h_A 584 Y 584 (679)
T ss_dssp T
T ss_pred h
Confidence 4
No 92
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.98 E-value=2.5e-08 Score=83.25 Aligned_cols=137 Identities=12% Similarity=0.030 Sum_probs=86.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 354 (427)
+...|.+.|++++|...|++..+.... +...+..+...+...|++++|...|++..+... -+..++..+..+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence 677777888888888888887776543 566777788888888888888888888877642 245667777666655543
Q ss_pred --HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 045814 355 --LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417 (427)
Q Consensus 355 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 417 (427)
.+.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......+.+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 3344444444432 122222333445556667888888888888776 3566555544433
No 93
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.98 E-value=1.1e-07 Score=79.63 Aligned_cols=180 Identities=11% Similarity=-0.003 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----ChHHHHHH
Q 045814 216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR----KRLEAYRV 291 (427)
Q Consensus 216 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~ 291 (427)
.+|++.|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..+...|.. + ++++|...
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35677777777764 66788888888888999999999999988876 55677777777777 6 89999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhh----cCCHHHHHHHH
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCR----IDNLEEAKRLH 362 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~ 362 (427)
|++..+.| +...+..+...|.. .+++++|..+|++..+.|.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 56677778888877 78999999999999887632 125677788888877 78999999999
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCCCC
Q 045814 363 KEMLDKGYGETTVTYNTLIAGLCLH-G-----RTDEAYHLFEEMAQKGIFR 407 (427)
Q Consensus 363 ~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~~p 407 (427)
++..+. ..+...+..|...|... | +.++|.+.|++..+.|...
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 999886 23555777787777654 3 8999999999998887543
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.98 E-value=4e-08 Score=85.15 Aligned_cols=170 Identities=12% Similarity=0.039 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-hhhHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD-TVMYT 308 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~ 308 (427)
+...+..+...+.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|...|++..+.... |. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445566666677777777777777777776532211 456666777777777777777777777665321 11 33455
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHhhcCCHHHHHHHHH
Q 045814 309 TVIHGLCK--------MGWLGDARKMWFEMIHKGLLPNEYTY-----------------NSMIHGYCRIDNLEEAKRLHK 363 (427)
Q Consensus 309 ~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~~ 363 (427)
.+..++.. .|++++|...|+++.+.... +.... ..+...|.+.|++++|...|+
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 56666666 77777777777777765311 12222 445677888888888888888
Q ss_pred HHHHCCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 045814 364 EMLDKGYGE--TTVTYNTLIAGLCLH----------GRTDEAYHLFEEMAQK 403 (427)
Q Consensus 364 ~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~ 403 (427)
.+.+..... ....+..+..+|... |++++|...|+++.+.
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 887652211 234666777777765 7888888888888775
No 95
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.97 E-value=1.3e-07 Score=82.44 Aligned_cols=157 Identities=9% Similarity=0.039 Sum_probs=110.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-----CHhhHHHHHHH-
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-----DNFTYEEVING- 278 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~- 278 (427)
..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+...+..+
T Consensus 107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~ 184 (310)
T 3mv2_B 107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESY 184 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHH
Confidence 3444556666666677766655553 226677888899999999999999999999776 45 35566666655
Q ss_pred -HHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---------CCCCHHHHHHHH
Q 045814 279 -LCKSR--KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG---------LLPNEYTYNSMI 346 (427)
Q Consensus 279 -~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~~~~~~~li 346 (427)
....| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+.- -+-|..++..+|
T Consensus 185 v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i 262 (310)
T 3mv2_B 185 IKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQI 262 (310)
T ss_dssp HHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence 33334 899999999998765 3443333445558889999999999998766531 123566775666
Q ss_pred HHHhhcCCHHHHHHHHHHHHHC
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
......|+ +|.+++.++.+.
T Consensus 263 ~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 263 TLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHhCh--HHHHHHHHHHHh
Confidence 66666676 889999999886
No 96
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.94 E-value=1.9e-08 Score=89.58 Aligned_cols=227 Identities=10% Similarity=0.002 Sum_probs=161.7
Q ss_pred hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229 (427)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 229 (427)
..|++++|.+++++..+.... . + +...++++.|...|..+ ...|...|++++|...+.+.....
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---~------~~~~~~~~~A~~~~~~a------~~~~~~~g~~~~A~~~~~~al~~~ 66 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---F------MKWKPDYDSAASEYAKA------AVAFKNAKQLEQAKDAYLQEAEAH 66 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---S------SSCSCCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---c------cCCCCCHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHH
Confidence 357889999999988764211 1 1 11158899999999876 456888999999999998876531
Q ss_pred C----CC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC---CCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814 230 L----VP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299 (427)
Q Consensus 230 ~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 299 (427)
. .. -..+|+.+...|.+.|++++|...|++..+... .+. ..++..+...|.. |++++|+..|++..+..
T Consensus 67 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~ 145 (307)
T 2ifu_A 67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF 145 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence 1 11 145788888999999999999999998765311 222 3577788888888 99999999999886542
Q ss_pred CCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 045814 300 YVP-----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369 (427)
Q Consensus 300 ~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 369 (427)
... ...++..+...|.+.|++++|+..+++..+. +..+. ..++..+..++...|++++|...|++.. .
T Consensus 146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~- 223 (307)
T 2ifu_A 146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S- 223 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T-
T ss_pred HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C-
Confidence 111 1457888889999999999999999998764 21111 2256666777888899999999999988 4
Q ss_pred CCCCh------hhHHHHHHHHHhcCCHHHHHHHH
Q 045814 370 YGETT------VTYNTLIAGLCLHGRTDEAYHLF 397 (427)
Q Consensus 370 ~~p~~------~~~~~li~~~~~~g~~~~A~~~~ 397 (427)
.|+. .....++.++ ..|+.+.+.++.
T Consensus 224 -~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~ 255 (307)
T 2ifu_A 224 -IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVC 255 (307)
T ss_dssp -STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHT
T ss_pred -CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence 2321 2344555555 678877766643
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=9.2e-09 Score=101.97 Aligned_cols=173 Identities=9% Similarity=-0.108 Sum_probs=141.1
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 045814 210 CNDGKVSEGYELLRQVL--------EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 281 (427)
...|++++|++.+++.. .... .+...+..+...+...|++++|.+.|++..+.+.. +...|..+...|.+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 67889999999999988 4322 25678888899999999999999999999887432 66788999999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL 361 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~ 361 (427)
.|++++|...|++..+.... +...|..+..++.+.|++++ ...|++..+.+. -+...|..+..++.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887543 56788899999999999999 999999998743 2567889999999999999999999
Q ss_pred HHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 045814 362 HKEMLDKGYGET-TVTYNTLIAGLCLHGR 389 (427)
Q Consensus 362 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~ 389 (427)
|++..+. .|+ ...|..+..++...|+
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 9998875 344 5677777777766554
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.93 E-value=4.1e-08 Score=85.08 Aligned_cols=159 Identities=13% Similarity=0.101 Sum_probs=107.0
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCC-HhhHHHHHHHHHh-
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLVPE---NTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APD-NFTYEEVINGLCK- 281 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~-~~~~~~ll~~~~~- 281 (427)
.+.+.|++++|...|+++...... + ...+..+..++.+.|++++|...|++..+..+ .|. ...+..+..++..
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 344555556666666665554322 2 45666777777778888888888887777533 112 3455666666766
Q ss_pred -------cCChHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 045814 282 -------SRKRLEAYRVFNDLKERGYVPDTVMY-----------------TTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337 (427)
Q Consensus 282 -------~~~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 337 (427)
.|++++|...|+++.+.... +.... ..+...|.+.|++++|...|+++.+.....
T Consensus 103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 181 (261)
T 3qky_A 103 SPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT 181 (261)
T ss_dssp CCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred cccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence 77888888888877765322 22222 456778889999999999999998763221
Q ss_pred --CHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHC
Q 045814 338 --NEYTYNSMIHGYCRI----------DNLEEAKRLHKEMLDK 368 (427)
Q Consensus 338 --~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 368 (427)
....+..+..+|... |++++|...|+.+.+.
T Consensus 182 ~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 182 PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 234677777778766 8889999999999875
No 99
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.92 E-value=3.6e-08 Score=82.28 Aligned_cols=135 Identities=8% Similarity=0.010 Sum_probs=99.8
Q ss_pred HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW 319 (427)
Q Consensus 240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 319 (427)
+..++.+.|++++|...|++..+..+. +...+..+...|...|++++|...|++..+.... +..+|..+...|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~ 137 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE 137 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence 888899999999999999999887533 6788999999999999999999999999887544 67788888888766554
Q ss_pred --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814 320 --LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380 (427)
Q Consensus 320 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 380 (427)
.+.+...++.... ..|....+.....++...|++++|...|++..+. .|+......+
T Consensus 138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 3445555555432 2333334444556677789999999999999875 5665544433
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=2.8e-08 Score=88.45 Aligned_cols=213 Identities=11% Similarity=0.045 Sum_probs=138.3
Q ss_pred cCChHHHHHHHHhcC-CCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHH
Q 045814 119 ARAFKVAMDFLDSTG-FSPNPNSLELYIQCLCE-SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY 196 (427)
Q Consensus 119 ~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 196 (427)
.|++++|.+++++.. ..+. .+.+ .+++++|...|.+. ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 466777877777531 0110 1222 46777777777654 45667788888888888
Q ss_pred HHHHhcc--------------hhHHHHHhcCChhHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHccCChhHHHHHH
Q 045814 197 HDLIESG--------------YLIQAFCNDGKVSEGYELLRQVLEDG---LVP--ENTAFNKLISRFCEKKNFGRVSELL 257 (427)
Q Consensus 197 ~~~~~~~--------------~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--~~~~~~~li~~~~~~~~~~~a~~~~ 257 (427)
.+..+.. .+...|...|++++|+..+++....- -.+ -..++..+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 7766541 25667778889999998888776431 111 13567777788877 8999999888
Q ss_pred HHHhhCCCCC-----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHccCCHHHHHHHH
Q 045814 258 HTMVARNRAP-----DNFTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVPD-TVMYTTVIHGLCKMGWLGDARKMW 327 (427)
Q Consensus 258 ~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~ 327 (427)
++..+..... ...++..+...|.+.|++++|...|++..+. +..+. ...+..+...+...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8776542111 1356777888888899999999988887653 11111 225566667777778999999999
Q ss_pred HHHHHcCCCCCH------HHHHHHHHHHhhcCCHHHHHH
Q 045814 328 FEMIHKGLLPNE------YTYNSMIHGYCRIDNLEEAKR 360 (427)
Q Consensus 328 ~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~ 360 (427)
++.. . .|+. .....++.++ ..|+.+.+.+
T Consensus 219 ~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8887 4 2321 1234445554 5566665555
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.88 E-value=8.3e-09 Score=81.24 Aligned_cols=141 Identities=8% Similarity=-0.098 Sum_probs=70.8
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHH
Q 045814 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA 323 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 323 (427)
+...|++++|+..+........ -+...+-.+...|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence 3344555555555555443311 12234445555555666666666666655554332 445555555666666666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcC
Q 045814 324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL-HKEMLDKGYGETTVTYNTLIAGLCLHG 388 (427)
Q Consensus 324 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g 388 (427)
...|++..+.... +..++..+...|.+.|++++|.+. +++..+.. +-++.+|......+...|
T Consensus 85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 6666665554211 344555555556666655544433 35544432 113444554444444444
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.88 E-value=2e-06 Score=75.68 Aligned_cols=151 Identities=5% Similarity=0.048 Sum_probs=64.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC------
Q 045814 213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG--RVSELLHTMVARNRAPDNFTYEEVINGLCKSRK------ 284 (427)
Q Consensus 213 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------ 284 (427)
+++++++++++.+.....+ +-.+|+--...+.+.|.++ ++++.++++.+.++. |...|+.-...+.+.++
T Consensus 124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence 3445555555555544333 4445544444444455554 555555555554322 34444444333333333
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH-HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG-DARKMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRL 361 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~ 361 (427)
++++++.++++....+. |...|+-+-..+.+.|+.. .+..+..++.+.+ -..+...+..+...|.+.|+.++|.++
T Consensus 202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 44444444444444332 4444444444444444322 2223333332221 011333444444444444444444444
Q ss_pred HHHHH
Q 045814 362 HKEML 366 (427)
Q Consensus 362 ~~~m~ 366 (427)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.88 E-value=3.2e-07 Score=77.50 Aligned_cols=178 Identities=11% Similarity=0.011 Sum_probs=98.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLV-P-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN--FTYEEVINGLCK 281 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~ 281 (427)
...+...|++++|...|+++...... | ....+..+..++.+.|++++|...|+++.+..+.... ..+..+..++.+
T Consensus 11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA 90 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence 34556666777777777766654322 1 1245555666666667777777777666655322111 123333333332
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-H-----------------HHH
Q 045814 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE-Y-----------------TYN 343 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~-----------------~~~ 343 (427)
.+.. .+ ..|..+...+...|+.++|...|+++.+.. |+. . ...
T Consensus 91 ~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~ 151 (225)
T 2yhc_A 91 LDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEY 151 (225)
T ss_dssp HHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00 000000111112344444544444444431 111 1 112
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGET----TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (427)
.+...|.+.|++++|...|+++.+.. |+ ...+..+..+|.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 45567888999999999999998762 33 2568888899999999999999999988764
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.87 E-value=1.6e-08 Score=79.51 Aligned_cols=145 Identities=12% Similarity=-0.051 Sum_probs=113.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN 354 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 354 (427)
|...+...|++++|+..+......... +...+-.+...|.+.|++++|+..|++..+... -+..+|..+..+|...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence 344566778999999999988765322 455677789999999999999999999998753 367899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHhHHHHHHHHHHhcCC
Q 045814 355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL-FEEMAQKGIFR-DVITYNTLIQGYCKEGK 424 (427)
Q Consensus 355 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~li~~~~~~g~ 424 (427)
+++|...|++..+.... +...|..+...|.+.|++++|.+. +++..+. .| +...|......+.+.|+
T Consensus 81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99999999999986422 678899999999999999877665 5887774 34 45677777777777764
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.85 E-value=3.6e-08 Score=79.84 Aligned_cols=163 Identities=12% Similarity=0.048 Sum_probs=115.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-H
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-L 314 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~ 314 (427)
.+..+...+...|++++|...+++..+..+ .+...+..+...+.+.|++++|...|++..+.. |+...+...... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence 345566677888888888888887766532 256678888888888899999988888876653 333333222211 1
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 045814 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A 393 (427)
...+...+|...+++..+... -+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 222333457888888877632 256778888888999999999999999988764332 355788888899999999999
Q ss_pred HHHHHHHHH
Q 045814 394 YHLFEEMAQ 402 (427)
Q Consensus 394 ~~~~~~m~~ 402 (427)
...|++...
T Consensus 164 ~~~y~~al~ 172 (176)
T 2r5s_A 164 ASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887654
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=8.8e-08 Score=93.04 Aligned_cols=154 Identities=10% Similarity=-0.009 Sum_probs=115.8
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291 (427)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 291 (427)
.|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47889999999988876443 678899999999999999999999999988753 3577888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHC
Q 045814 292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI---DNLEEAKRLHKEMLDK 368 (427)
Q Consensus 292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 368 (427)
|++..+.... +...+..+..+|.+.|++++|...+++..+... .+...+..+..++... |+.++|.+.+++..+.
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999877543 577888999999999999999999999988742 3567888888999999 9999999999999886
Q ss_pred C
Q 045814 369 G 369 (427)
Q Consensus 369 ~ 369 (427)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
No 107
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=9e-08 Score=92.98 Aligned_cols=146 Identities=9% Similarity=-0.046 Sum_probs=104.8
Q ss_pred cCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814 186 IDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL 257 (427)
Q Consensus 186 ~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 257 (427)
.|++++|...|++..+.+ .+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367788888888877653 3677788889999999999988876543 6778888888899999999999999
Q ss_pred HHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcC
Q 045814 258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM---GWLGDARKMWFEMIHKG 334 (427)
Q Consensus 258 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~ 334 (427)
++..+... .+...+..+...|.+.|++++|.+.|++..+.... +...+..+...+... |+.++|...+++..+.+
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 98887743 25678888888899999999999999988776443 567788888888888 89999999999888774
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.84 E-value=3.1e-08 Score=80.26 Aligned_cols=157 Identities=10% Similarity=0.073 Sum_probs=109.0
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCh
Q 045814 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING-LCKSRKR 285 (427)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~ 285 (427)
..+...|++++|...+++.....+. +...+..+...+...|++++|...+++...... +...+...... +...+..
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhccc
Confidence 3455666777777777665543322 567788888888889999999998888766533 43333222211 1222333
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKE 364 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 364 (427)
.+|...+++..+.... +...+..+...+...|++++|...++++.+....+ +...+..+...+...|+.++|...|++
T Consensus 91 ~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 91 SPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp CHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 4578888888776433 56788888888999999999999999988765332 345788888888899999999988887
Q ss_pred HHH
Q 045814 365 MLD 367 (427)
Q Consensus 365 m~~ 367 (427)
...
T Consensus 170 al~ 172 (176)
T 2r5s_A 170 QLY 172 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.82 E-value=3.9e-06 Score=73.81 Aligned_cols=226 Identities=9% Similarity=0.024 Sum_probs=166.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC
Q 045814 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED 228 (427)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 228 (427)
.+....++|+++++++...+.. +...|+.--..+...+. .+++++++.++.+...
T Consensus 44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~------------------------~~~~eeL~~~~~~L~~ 98 (306)
T 3dra_A 44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPN------------------------RNLYDELDWCEEIALD 98 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTT------------------------SCHHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHccc------------------------ccHHHHHHHHHHHHHH
Confidence 3344456888988888886544 45556654444444330 2566666666666665
Q ss_pred CCCCCHHHHHHHHHHH----Hcc---CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH--HHHHHHHHHHhCC
Q 045814 229 GLVPENTAFNKLISRF----CEK---KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL--EAYRVFNDLKERG 299 (427)
Q Consensus 229 ~~~~~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~ 299 (427)
.++ +..+|+.--..+ ... +++++++++++.+.+...+ +..+|+--.-.+.+.|.++ ++++.++++.+..
T Consensus 99 nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d 176 (306)
T 3dra_A 99 NEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD 176 (306)
T ss_dssp CTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred Ccc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence 544 444555544444 444 7899999999999987644 7778888777788888888 9999999999887
Q ss_pred CCCChhhHHHHHHHHHccCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHCC--C
Q 045814 300 YVPDTVMYTTVIHGLCKMGW------LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL-EEAKRLHKEMLDKG--Y 370 (427)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~--~ 370 (427)
+. |...|+.-...+...++ ++++++.++++...... |...|+-.-..+.+.|.. +.+..+..++.+.+ -
T Consensus 177 ~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 177 LK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp TT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred CC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 66 78888877777777776 89999999999988644 788898888888888874 44556777666543 1
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 371 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
..++..+..+...|.+.|+.++|.++++.+.++
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 236788999999999999999999999999864
No 110
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.82 E-value=1.4e-07 Score=82.96 Aligned_cols=166 Identities=12% Similarity=0.015 Sum_probs=131.5
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-HHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT-TVI 311 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li 311 (427)
+...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...++++.... |+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence 5566777888889999999999999999887533 56788889999999999999999999887653 4443322 223
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCH
Q 045814 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNTLIAGLCLHGRT 390 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~ 390 (427)
..+.+.++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++..|...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 34667788888999999988874 3367788889999999999999999999998864321 267889999999999999
Q ss_pred HHHHHHHHHHHH
Q 045814 391 DEAYHLFEEMAQ 402 (427)
Q Consensus 391 ~~A~~~~~~m~~ 402 (427)
++|...|++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999988887653
No 111
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.82 E-value=4.2e-08 Score=97.26 Aligned_cols=172 Identities=12% Similarity=-0.065 Sum_probs=141.4
Q ss_pred HccCChhHHHHHHHHHh--------hCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814 245 CEKKNFGRVSELLHTMV--------ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~ 316 (427)
...|++++|.+.+++.. +.. +.+...+..+...|.+.|++++|...|+++.+.... +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999998 332 335578888999999999999999999999887543 67789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045814 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 396 (427)
.|++++|...|++..+.... +...+..+..+|.+.|++++ .+.|++..+.+. -+...|..+..+|.+.|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999987432 56788899999999999999 999999988643 2678899999999999999999999
Q ss_pred HHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 045814 397 FEEMAQKGIFRD-VITYNTLIQGYCKEG 423 (427)
Q Consensus 397 ~~~m~~~g~~p~-~~~~~~li~~~~~~g 423 (427)
|++..+. .|+ ...+..+..++...|
T Consensus 557 ~~~al~l--~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPT--SRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred HHhhccc--CcccHHHHHHHHHHHHccC
Confidence 9998874 455 456666666655444
No 112
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.81 E-value=5.4e-07 Score=76.04 Aligned_cols=179 Identities=8% Similarity=-0.046 Sum_probs=116.3
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHH
Q 045814 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN--TAFN 238 (427)
Q Consensus 172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~ 238 (427)
+...+..+...+.+.|++++|...|+.+++.. .+..+|.+.|++++|+..|+++.+..+.... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 44566677788999999999999999998742 2577889999999999999999976543211 2444
Q ss_pred HHHHHHHc------------------cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 239 KLISRFCE------------------KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 239 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
.+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 44555543 34555666666655554211 11111111000 0000000
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 045814 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369 (427)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 369 (427)
......+...|.+.|++++|...|+++.+..... ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0011245667888999999999999998863221 12467788889999999999999999888764
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.78 E-value=8.5e-07 Score=74.10 Aligned_cols=82 Identities=10% Similarity=0.058 Sum_probs=34.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHh----cCC
Q 045814 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCK----SRK 284 (427)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~~~ 284 (427)
+.++|+++|++..+.| +...+..|...|.. .+++++|.+.|++..+.+.. .+...+..|...|.. .++
T Consensus 68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d 144 (212)
T 3rjv_A 68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED 144 (212)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence 3444444444443332 23344444444443 44455555555554444321 013344444444444 444
Q ss_pred hHHHHHHHHHHHhC
Q 045814 285 RLEAYRVFNDLKER 298 (427)
Q Consensus 285 ~~~a~~~~~~m~~~ 298 (427)
+++|...|++..+.
T Consensus 145 ~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 145 DVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 44455544444443
No 114
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.77 E-value=8.1e-07 Score=74.03 Aligned_cols=129 Identities=11% Similarity=-0.055 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314 (427)
Q Consensus 235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (427)
..+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|...|++..+.... +...|..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence 345556677778888888888887663 456777888888888888888888888887766432 566777788888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 315 CKMGWLGDARKMWFEMIHKGLLP---------------NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
...|++++|...+++..+..... ....+..+..+|...|++++|...|+...+.
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 88888888888888887753211 1156677777788888888888888887765
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.77 E-value=1.4e-06 Score=76.68 Aligned_cols=164 Identities=9% Similarity=0.022 Sum_probs=120.3
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhCCC-CCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHH
Q 045814 239 KLISRFCEKKNFGRVSELLHTMVARNR-APDN----FTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYT 308 (427)
Q Consensus 239 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~ 308 (427)
..+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|...|++..+.... ++ ..+|+
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999998877532 2221 13335666777788999999999998874322 22 23688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hhhH
Q 045814 309 TVIHGLCKMGWLGDARKMWFEMIHK-----GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET-TVTY 377 (427)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~ 377 (427)
.+...|...|++++|...++++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8889999999999999999988742 21222 237788888999999999999999887643 22222 5688
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 045814 378 NTLIAGLCLHGR-TDEAYHLFEEMAQ 402 (427)
Q Consensus 378 ~~li~~~~~~g~-~~~A~~~~~~m~~ 402 (427)
..+..+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 889999999995 6999998887754
No 116
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.72 E-value=2.7e-07 Score=81.19 Aligned_cols=157 Identities=10% Similarity=0.045 Sum_probs=114.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHhcCCh
Q 045814 207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY-EEVINGLCKSRKR 285 (427)
Q Consensus 207 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~ 285 (427)
..+...|++++|...|++....... +...+..+...+.+.|++++|...+++..... |+.... ......+.+.++.
T Consensus 125 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhccc
Confidence 3445566666666666666665443 66788888888999999999999998877663 343322 2223346677788
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKE 364 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 364 (427)
++|...+++..+.... +...+..+...+...|++++|...+.++.+..... +...+..+...|...|+.++|...+++
T Consensus 202 ~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 202 TPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp CHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 8888888888776543 67788888889999999999999999988874321 256788888889999998888888876
Q ss_pred HHH
Q 045814 365 MLD 367 (427)
Q Consensus 365 m~~ 367 (427)
...
T Consensus 281 al~ 283 (287)
T 3qou_A 281 QLY 283 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.69 E-value=1.3e-06 Score=72.64 Aligned_cols=125 Identities=8% Similarity=-0.068 Sum_probs=99.0
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 045814 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283 (427)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 283 (427)
.+...+...|++++|...+++.. .|+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 35667778889999988887763 4577888888888888999999999998888764 235677888888888899
Q ss_pred ChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045814 284 KRLEAYRVFNDLKERGYVPDT----------------VMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334 (427)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 334 (427)
++++|...|++..+.... +. ..+..+..+|.+.|++++|...+++..+..
T Consensus 86 ~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp CHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999888776432 22 567778888888899999999998888763
No 118
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=4.7e-05 Score=72.12 Aligned_cols=124 Identities=14% Similarity=0.079 Sum_probs=81.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK-MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
.|...+..+.+.+..+.|..+|++. +.. ..+...|......-.. .++.+.|..+|+...+.- .-+...+...++..
T Consensus 288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e 364 (493)
T 2uy1_A 288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL 364 (493)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 3444555555667788888888888 321 1233344322222222 236888888888887753 11234455667777
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
...|+.+.|..+|+.+. .....|...+..-...|+.+.+.++++++..
T Consensus 365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77888888888888873 2567788888877788888888888877764
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.68 E-value=5.3e-06 Score=73.02 Aligned_cols=162 Identities=10% Similarity=0.021 Sum_probs=118.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC----HhhHHHH
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGL-VPEN----TAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PD----NFTYEEV 275 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l 275 (427)
+..+...|++++|...+++...... .|+. ..+..+...+...+++++|...+++....... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 3445667777777777777765322 2221 23445667777788999999999999874332 22 2368899
Q ss_pred HHHHHhcCChHHHHHHHHHHHh----C-CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 045814 276 INGLCKSRKRLEAYRVFNDLKE----R-GYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPN-EYTYNS 344 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ 344 (427)
...|...|++++|...|+++.+ . +..+. ..+|..+...|.+.|++++|...+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9999999999999999999874 1 11222 347888999999999999999999988754 22222 567888
Q ss_pred HHHHHhhcCC-HHHHHHHHHHHHH
Q 045814 345 MIHGYCRIDN-LEEAKRLHKEMLD 367 (427)
Q Consensus 345 li~~~~~~g~-~~~a~~~~~~m~~ 367 (427)
+..+|.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 9999999994 6999999988764
No 120
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.66 E-value=3e-06 Score=74.65 Aligned_cols=166 Identities=8% Similarity=0.036 Sum_probs=110.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH-----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC--hh
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN-----FTYEEVINGLCKSRKRLEAYRVFNDLKERGYV---PD--TV 305 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~ 305 (427)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...+++..+.... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556667777777777777766654322111 22334555667778888888888887653211 11 34
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCC-Ch
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPN-----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGE-TT 374 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~ 374 (427)
+|+.+...|...|++++|...+++..+. ...|+ ..++..+...|...|++++|...+++..+. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7778888888888888888888887632 01112 247778888888899999999888877643 1111 15
Q ss_pred hhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 045814 375 VTYNTLIAGLCLHGRTDEA-YHLFEEMA 401 (427)
Q Consensus 375 ~~~~~li~~~~~~g~~~~A-~~~~~~m~ 401 (427)
.+|..+...|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6778888888899999888 67677654
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.64 E-value=1.5e-06 Score=69.02 Aligned_cols=128 Identities=10% Similarity=-0.017 Sum_probs=77.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
.+..+...+...|++++|...|++..+.... +..++..+...+...|++++|...+++..+.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 4455555666666666666666666554322 45566666666677777777777777766653 224556666666777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 045814 351 RIDNLEEAKRLHKEMLDKGYGETTVTYNT--LIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~ 401 (427)
..|++++|...+++..+... .+...+.. +...+...|++++|.+.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777665422 13334422 2333556677777777776554
No 122
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=4.6e-07 Score=74.76 Aligned_cols=133 Identities=13% Similarity=-0.052 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC--C
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLP--N 338 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~ 338 (427)
.++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+. +..| .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 34444444555555555555555444331 1111 1234444555555555555555555554432 1011 1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYG-ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 339 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
...+..+...+...|++++|...+++..+. +.. .-..++..+...+...|++++|.+.+++..+
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 223444555555556666666555554422 100 0012345555556666666666666655543
No 123
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.60 E-value=3.8e-05 Score=68.38 Aligned_cols=185 Identities=11% Similarity=0.010 Sum_probs=104.4
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH------
Q 045814 215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEK-K-NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL------ 286 (427)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~------ 286 (427)
++++++.++.+.....+ +..+|+.-...+... + ++++++++++.+.+...+ |..+|+--.-.+.+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhh
Confidence 44444445555444433 444555444444443 4 556666666666655432 4455554444444444444
Q ss_pred --HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH--
Q 045814 287 --EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW-------LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL-- 355 (427)
Q Consensus 287 --~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-- 355 (427)
++++.++++.+..+. |...|+.....+.+.++ ++++++.++++...... |...|+-+-..+.+.|..
T Consensus 183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~ 260 (349)
T 3q7a_A 183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLV 260 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcc
Confidence 677777777766554 66677766666666665 56777777777766432 566666555555444432
Q ss_pred ------------------HHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 356 ------------------EEAKRLHKEMLDKG-----YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 356 ------------------~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
........++...+ -.+++..+..|.+.|...|+.++|.++++.+.++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22233333332221 1246777888888888888888899998888654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.60 E-value=4.2e-06 Score=73.68 Aligned_cols=163 Identities=9% Similarity=-0.010 Sum_probs=119.0
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHhhCCC---CCC--HhhHHH
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPE-----NTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APD--NFTYEE 274 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~ 274 (427)
.+..+...|++++|.+.+.+........+ ...+..+...+...|++++|...+++..+... .+. ..+++.
T Consensus 81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 2qfc_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34556777888888888877766433211 12344456677888999999999998876432 112 347889
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh---CC-CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHHHHH
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKE---RG-YVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLP-NEYTYN 343 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~---~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~ 343 (427)
+...|...|++++|...|++..+ .. ..+ ...+|..+...|...|++++|...+++..+.. ... -..+|.
T Consensus 161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~ 240 (293)
T 2qfc_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 99999999999999999999862 21 111 12588889999999999999999999887542 111 156788
Q ss_pred HHHHHHhhcCCHHHH-HHHHHHHHH
Q 045814 344 SMIHGYCRIDNLEEA-KRLHKEMLD 367 (427)
Q Consensus 344 ~li~~~~~~g~~~~a-~~~~~~m~~ 367 (427)
.+..+|.+.|++++| ...+++...
T Consensus 241 ~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 899999999999999 777877653
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.58 E-value=8.2e-05 Score=70.46 Aligned_cols=320 Identities=10% Similarity=-0.005 Sum_probs=188.7
Q ss_pred CChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCC-hHHHHHHHHh----cCCCC-CHHhHHHHHHHHH----hcCC
Q 045814 84 NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARA-FKVAMDFLDS----TGFSP-NPNSLELYIQCLC----ESGL 153 (427)
Q Consensus 84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~----~~~~~-~~~~~~~li~~~~----~~~~ 153 (427)
++.+.+..+|+..... .|+...|...+....+.+. .+.+...|+. +|..| +...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 7899999999998663 5799999999998887763 3444555553 45443 6678888887654 3467
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc-------------CChhHHHHHHHHHHhc----ch-hHHHHHh--cC
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI-------------DRTDLVWKLYHDLIES----GY-LIQAFCN--DG 213 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------~~~~~a~~~~~~~~~~----~~-l~~~~~~--~g 213 (427)
.+.+.++|++.......--...|......-... +.+..|..+++.+... .. +-..|+. .+
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence 889999999998742221112222222211111 1222333334333321 00 1111221 12
Q ss_pred C---------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 214 K---------VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 214 ~---------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
+ .+.+..+|+++..... .+...|...+..+.+.|+.+.|..++++.... |....... .|....+
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e 257 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMD 257 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTT
T ss_pred CCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcc
Confidence 1 2346678888877543 35778888888888899999999999999887 33322111 2222222
Q ss_pred hHHHHHHHHHHHhCC---------C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-
Q 045814 285 RLEAYRVFNDLKERG---------Y---VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR- 351 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~- 351 (427)
.++. ++.+.+.- . ......|...+....+.+..+.|..+|+++ .. ...+...|......-..
T Consensus 258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH
T ss_pred hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH
Confidence 2222 23322110 0 011245666677777788899999999999 32 12233344322222222
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814 352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424 (427)
Q Consensus 352 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 424 (427)
.++.+.|..+|+...+.- +-++..|...++...+.|+.+.|..+|+++.+ ....|...++--...|+
T Consensus 333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSC
T ss_pred CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC
Confidence 336999999999998752 22455677788888889999999999888631 34555555554444443
No 126
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.58 E-value=3.2e-06 Score=63.79 Aligned_cols=119 Identities=12% Similarity=0.034 Sum_probs=72.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 383 (427)
...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 3455555666666666666666666666542 2245556666666666677777777766666542 2245566666667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
|...|++++|.+.|++..+... .+...+..+...+.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence 7777777777777776666422 2455666666666666665
No 127
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.57 E-value=2.7e-06 Score=67.44 Aligned_cols=129 Identities=8% Similarity=-0.012 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314 (427)
Q Consensus 235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (427)
..+..+...+...|++++|...+++..+... .+..++..+...+...|++++|...+++..+.... +...|..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 4566677778888888888888888777642 25677788888888888888888888888776432 566788888888
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhhcCCHHHHHHHHHHHH
Q 045814 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNS--MIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~ 366 (427)
...|++++|...++++.+.... +...+.. ....+...|++++|...+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 8888999999888888876322 3444433 3334667788888888887654
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=4.1e-06 Score=62.55 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=51.6
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 384 (427)
..|..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344445555555555555555555555442 1234445555555555555666655555555432 22445555555556
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 045814 385 CLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 385 ~~~g~~~~A~~~~~~m~~~ 403 (427)
...|++++|.+.++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 6666666666666655543
No 129
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.56 E-value=7.1e-07 Score=72.05 Aligned_cols=121 Identities=8% Similarity=0.015 Sum_probs=63.8
Q ss_pred HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCH--H
Q 045814 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-LCKMGWL--G 321 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~ 321 (427)
...|++++|...+++..+... .+...+..+...|...|++++|...|++..+.... +...+..+..+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 344556666666665555432 24455566666666666666666666665544322 34445555555 4455665 6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+|...++++.+... .+...+..+...|...|++++|...|+...+.
T Consensus 99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666655431 13445555555566666666666666665554
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.1e-06 Score=72.51 Aligned_cols=157 Identities=13% Similarity=0.002 Sum_probs=113.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCC
Q 045814 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRK 284 (427)
Q Consensus 210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~ 284 (427)
...|++++|.+.++.+... ......++..+...+...|++++|...+++..+. +..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4567888888855554432 2235678888999999999999999999987762 2222 34578888889999999
Q ss_pred hHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhhcC
Q 045814 285 RLEAYRVFNDLKER----GYVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG---LLPN--EYTYNSMIHGYCRID 353 (427)
Q Consensus 285 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g 353 (427)
+++|...+++..+. +-.+ ....+..+...+...|++++|...+++..... -.+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987543 2111 23467788889999999999999999887431 1111 234677888899999
Q ss_pred CHHHHHHHHHHHHH
Q 045814 354 NLEEAKRLHKEMLD 367 (427)
Q Consensus 354 ~~~~a~~~~~~m~~ 367 (427)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988764
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.55 E-value=3.8e-06 Score=62.76 Aligned_cols=97 Identities=13% Similarity=0.133 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444445555555555555555555544322 134445555555555555555555555555442 12344555555555
Q ss_pred hhcCCHHHHHHHHHHHHHC
Q 045814 350 CRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~ 368 (427)
...|++++|...++++.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 5556666666665555543
No 132
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.55 E-value=2.6e-06 Score=64.47 Aligned_cols=93 Identities=16% Similarity=0.092 Sum_probs=37.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814 273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI 352 (427)
Q Consensus 273 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 352 (427)
......|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+.+. .+...|..+..+|...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHC
Confidence 33344444444444444444444333221 333444444444444444444444444443321 1233344444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 045814 353 DNLEEAKRLHKEMLD 367 (427)
Q Consensus 353 g~~~~a~~~~~~m~~ 367 (427)
|++++|.+.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.53 E-value=3e-06 Score=64.32 Aligned_cols=94 Identities=14% Similarity=0.042 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
.+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence 3344444444444444444444444433211 33334444444444444444444444444332 112333444444444
Q ss_pred hcCCHHHHHHHHHHHH
Q 045814 351 RIDNLEEAKRLHKEML 366 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~ 366 (427)
..|++++|.+.+++..
T Consensus 96 ~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 96 AMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHH
Confidence 4444444444444443
No 134
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.52 E-value=3.5e-06 Score=63.73 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314 (427)
Q Consensus 235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (427)
..+......|.+.|++++|++.|++.++... .+...|..+..+|.+.|++++|+..|++..+.... +...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 4677778888999999999999998887753 36778888889999999999999999998877543 677888899999
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 045814 315 CKMGWLGDARKMWFEMIHKGLLPN-EYTYNSM 345 (427)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l 345 (427)
...|++++|...|++..+.. |+ ......+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l 121 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD--PSNEEAREGV 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC--cCCHHHHHHH
Confidence 99999999999999988863 43 4444433
No 135
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.52 E-value=8.6e-07 Score=71.57 Aligned_cols=123 Identities=5% Similarity=0.077 Sum_probs=100.0
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCh--
Q 045814 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING-LCKSRKR-- 285 (427)
Q Consensus 209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~-- 285 (427)
+...|++++|...+++....... +...+..+...|...|++++|...|++..+... .+...+..+... +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence 45678889999999988876543 778899999999999999999999999888743 356778888888 7789998
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG 334 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 334 (427)
++|...|+++.+.... +...+..+...|...|++++|...++++.+..
T Consensus 98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999887543 56788889999999999999999999998874
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.50 E-value=3.6e-06 Score=63.52 Aligned_cols=117 Identities=14% Similarity=0.024 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 34445555555566666666666655544221 44455555566666666666666666665542 12344555556666
Q ss_pred hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814 350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~ 389 (427)
...|++++|...+++..+... .+...+..+..++...|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 666666666666666655421 244555555555555554
No 137
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=3.9e-06 Score=63.62 Aligned_cols=120 Identities=12% Similarity=0.033 Sum_probs=99.1
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
.+...|..+...+.+.|++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 356688889999999999999999999998864 2367788899999999999999999999998863 23678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424 (427)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 424 (427)
..|...|++++|.+.|++..+.... +...+..+...+.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence 9999999999999999999875322 34667777777776653
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=1.7e-06 Score=74.48 Aligned_cols=197 Identities=11% Similarity=-0.077 Sum_probs=136.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCChhHHHHHHHHHhhCCCCCCH--------------
Q 045814 211 NDGKVSEGYELLRQVLEDGLVPENTAFNKL-------ISRFCEKKNFGRVSELLHTMVARNRAPDN-------------- 269 (427)
Q Consensus 211 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------------- 269 (427)
..++...|.+.|.+.....+. ....|..+ ...+...++..+++..+..-.. +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888888888888876554 56677766 3445554455555555544433 22211
Q ss_pred --------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--H
Q 045814 270 --------FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN--E 339 (427)
Q Consensus 270 --------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~ 339 (427)
...-.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 123345667888999999999999887654 443355566668889999999999998654432 111 2
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL 415 (427)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 415 (427)
..+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++... .|+...+..|
T Consensus 172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 3677778899999999999999999885433243 345667777888999999999999999986 4554444333
No 139
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.47 E-value=2.2e-06 Score=67.00 Aligned_cols=96 Identities=13% Similarity=-0.078 Sum_probs=52.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++...... .+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 34445555555566666666666655544322 444555555555556666666666665555421 1344455555555
Q ss_pred hhcCCHHHHHHHHHHHHH
Q 045814 350 CRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~ 367 (427)
...|++++|...|+...+
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 556666666665555554
No 140
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.47 E-value=6.3e-06 Score=64.49 Aligned_cols=96 Identities=11% Similarity=-0.032 Sum_probs=59.6
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
.+..+...+.+.|++++|...|+++..... -+...|..+..+|...|++++|...|++..+... -+...|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence 455555666666666666666666666532 2455666666666666666666666666665432 24556666666666
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 045814 386 LHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 386 ~~g~~~~A~~~~~~m~~~ 403 (427)
..|++++|.+.|++..+.
T Consensus 116 ~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666666654
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=3.8e-06 Score=75.59 Aligned_cols=124 Identities=9% Similarity=-0.073 Sum_probs=66.1
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--------------HhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--------------NFTYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
+...+..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|...|++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455677777777778888888888877776543211 244445555555555555555555555444
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 045814 299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA 358 (427)
Q Consensus 299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a 358 (427)
... +...|..+..+|...|++++|...|+++.+... -+...+..+..++...|+.++|
T Consensus 226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 322 344444455555555555555555555544321 1333444444444444444444
No 142
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.46 E-value=3.7e-06 Score=75.66 Aligned_cols=121 Identities=11% Similarity=-0.057 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD--------------TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 336 (427)
.+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+...
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p- 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS- 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 444444445555555555555555444322110 24444455555555555555555555544421
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA 393 (427)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A 393 (427)
.+...|..+..+|...|++++|...|++..+... -+...+..+..++...|+.++|
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 1344444444555555555555555555444321 1334444444445555555444
No 143
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.45 E-value=4.9e-06 Score=71.63 Aligned_cols=129 Identities=6% Similarity=-0.101 Sum_probs=79.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHH
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP--DTVMYTTVIHGL 314 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~ 314 (427)
.-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .| ....+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence 3344556666777777777777666543 332244445556777777777777776544321 11 123556667777
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 315 CKMGWLGDARKMWFEMIHKGLLPN--EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 315 ~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.+.|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 777777777777777764332243 234455556667777777777777777765
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.45 E-value=6.4e-06 Score=64.42 Aligned_cols=97 Identities=9% Similarity=-0.071 Sum_probs=71.0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+..+...+.+.|++++|...|+++.+.... +...|..+..+|...|++++|...|++..+.... +...|..+..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~ 114 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence 45666677777788888888888877766443 5667777777777888888888888877776422 456677777777
Q ss_pred hhcCCHHHHHHHHHHHHHC
Q 045814 350 CRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~ 368 (427)
...|++++|...|+...+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877765
No 145
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=9.7e-07 Score=77.31 Aligned_cols=187 Identities=6% Similarity=-0.030 Sum_probs=117.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
...+...|++++|...|++....... +...|..+..++.+.|++++|...+++..+... .+...+..+..+|...|++
T Consensus 11 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~ 88 (281)
T 2c2l_A 11 GNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESY 88 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 34455666666777777766664433 677888899999999999999999999887743 3567888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814 286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 365 (427)
++|...|++..+.... +...+...+....+. .++.. +..........+......+ ..+ ..|+.++|.+.++..
T Consensus 89 ~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~a 161 (281)
T 2c2l_A 89 DEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRN 161 (281)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGG
T ss_pred HHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhh
Confidence 9999999988765321 111222222222211 11111 2223333334444443333 222 368889999888887
Q ss_pred HHCCCCCCh-hhHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 045814 366 LDKGYGETT-VTYNTLIAGLCLH-GRTDEAYHLFEEMAQK 403 (427)
Q Consensus 366 ~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m~~~ 403 (427)
.+. .|+. .....+-..+.+. +.+++|.++|.+..+.
T Consensus 162 l~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 162 HEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp GTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred hcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 765 3443 3334444444444 6788899999887653
No 146
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=2.2e-06 Score=74.98 Aligned_cols=96 Identities=11% Similarity=-0.003 Sum_probs=71.8
Q ss_pred CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814 105 DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182 (427)
Q Consensus 105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 182 (427)
+...+..+...+.+.|++++|...+++ ....| +...|..+..+|.+.|++++|...+++..+.... +...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 455677777788888888888888876 23334 5677888888888888888888888888776433 56777777777
Q ss_pred HHHcCChhHHHHHHHHHHh
Q 045814 183 CIKIDRTDLVWKLYHDLIE 201 (427)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~ 201 (427)
+...|++++|...|+...+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888777777776654
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.38 E-value=3.9e-06 Score=65.56 Aligned_cols=95 Identities=8% Similarity=-0.106 Sum_probs=42.7
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
.+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|++...... .+...|..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 333344444444555555555544444321 1334444444444444555555555544444321 13344444444444
Q ss_pred hcCCHHHHHHHHHHHHH
Q 045814 386 LHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 386 ~~g~~~~A~~~~~~m~~ 402 (427)
..|++++|.+.|++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555444443
No 148
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=2.1e-05 Score=73.19 Aligned_cols=165 Identities=9% Similarity=-0.085 Sum_probs=85.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCC-CCH----hhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-hhh
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRA-PDN----FTYEEVINGLCKSRKRLEAYRVFNDLKE----RGYVPD-TVM 306 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~ 306 (427)
+..+...|...|++++|.+.+..+...-.. ++. .+.+.+-..+...|++++|..++..... .+..+. ..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 455666666666666666666655432111 111 1222223333345666666666665532 121222 335
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHc--C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC--hh
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIHK--G--LLP-NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET--TV 375 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~ 375 (427)
+..+...|...|++++|..+++++... + -.+ ...++..++..|...|++++|..+++..... +.++. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666667777776666665433 1 111 1235566666666677777776666655432 11111 23
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
.+..+...+...|++++|.+.|.+..
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44555555566666666666655543
No 149
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.32 E-value=2e-05 Score=59.34 Aligned_cols=95 Identities=12% Similarity=0.043 Sum_probs=49.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 385 (427)
.|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+... .+...|..+..+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 34444445555555555555555555442 11344555555555555555555555555554421 13445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 045814 386 LHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 386 ~~g~~~~A~~~~~~m~~ 402 (427)
..|++++|.+.|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555544
No 150
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.31 E-value=0.00025 Score=63.05 Aligned_cols=32 Identities=6% Similarity=0.321 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
++...+..+...|...|+.++|.++++.+.+.
T Consensus 300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 45566666666777777777777777776543
No 151
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.30 E-value=1.5e-05 Score=60.37 Aligned_cols=96 Identities=11% Similarity=0.048 Sum_probs=48.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY--GET----TVTYNT 379 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 379 (427)
++..+...+.+.|++++|+..|++..+... -+..+|..+..+|...|++++|.+.+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344444555555555555555555554421 1344455555555555555555555555543210 000 124455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 045814 380 LIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+..++...|++++|++.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55556666666666666666554
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=3.4e-05 Score=56.76 Aligned_cols=93 Identities=19% Similarity=0.170 Sum_probs=38.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH 387 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 387 (427)
..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|...
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence 333344444444444444444444332 1123333444444444444444444444444331 11233444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 045814 388 GRTDEAYHLFEEMAQ 402 (427)
Q Consensus 388 g~~~~A~~~~~~m~~ 402 (427)
|++++|.+.+++..+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 444444444444443
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.29 E-value=4e-05 Score=56.37 Aligned_cols=110 Identities=15% Similarity=0.059 Sum_probs=90.4
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347 (427)
Q Consensus 268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 347 (427)
....+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence 3457788889999999999999999999876433 677888899999999999999999999988742 35778888999
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 380 (427)
++...|++++|.+.++...+.+. .+...+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 112 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGL 112 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence 99999999999999999987632 234444443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.29 E-value=1.5e-05 Score=60.37 Aligned_cols=96 Identities=9% Similarity=0.072 Sum_probs=54.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL--LPN----EYTYNS 344 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 344 (427)
.+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 4445555666666666666666666554332 445566666666666666666666666554311 111 124555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHH
Q 045814 345 MIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 345 li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+..++...|++++|.+.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 55666666677777777666655
No 155
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.28 E-value=2e-05 Score=59.30 Aligned_cols=95 Identities=12% Similarity=0.016 Sum_probs=52.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC 350 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 350 (427)
.+..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++..+... .+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence 3444455555555666666555555544322 445555555556666666666666666555431 13445555555666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 045814 351 RIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 351 ~~g~~~~a~~~~~~m~~ 367 (427)
..|++++|...|++..+
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 66666666666665554
No 156
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.26 E-value=1.8e-05 Score=65.06 Aligned_cols=131 Identities=13% Similarity=-0.062 Sum_probs=75.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C--------------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV-P--------------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 335 (427)
.+..+...+.+.|++++|...|++..+.... | ....|..+..+|.+.|++++|...+++..+..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 3444445555555555555555555543211 0 02566667777777788888888777777663
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 045814 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY-HLFEEMAQK 403 (427)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~ 403 (427)
+.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..|...
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2356667777777778888888888887777652 224566666666666666666655 445555443
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=1.7e-05 Score=59.66 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=49.0
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY--GET----TVTYNT 379 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~ 379 (427)
.|..+...+...|++++|...+++..... +.+...+..+...|...|++++|...+++..+... .++ ..+|..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444445555555555555555554442 12344445555555555555555555555544311 111 444555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 380 LIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+...|...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555566666666666666655553
No 158
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.25 E-value=2.2e-05 Score=57.23 Aligned_cols=96 Identities=10% Similarity=-0.009 Sum_probs=50.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHH
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE--TTVTYNTLIAG 383 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~ 383 (427)
.+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 444455555555555555555555554421 234445555555555556666665555555442 11 34555555555
Q ss_pred HHhc-CCHHHHHHHHHHHHHC
Q 045814 384 LCLH-GRTDEAYHLFEEMAQK 403 (427)
Q Consensus 384 ~~~~-g~~~~A~~~~~~m~~~ 403 (427)
|... |++++|.+.+++....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5566 6666666666555544
No 159
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.24 E-value=1.9e-05 Score=61.01 Aligned_cols=97 Identities=9% Similarity=-0.063 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...|++...... .+...+..+..+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 34445555666667777777777666655432 455666666666666677777766666666532 2344555666666
Q ss_pred hhcCCHHHHHHHHHHHHHC
Q 045814 350 CRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~ 368 (427)
...|++++|...|+...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 6666666666666666553
No 160
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.24 E-value=1.9e-05 Score=57.52 Aligned_cols=98 Identities=10% Similarity=-0.039 Sum_probs=61.6
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 045814 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMI 346 (427)
Q Consensus 269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li 346 (427)
...+..+...+...|++++|...|++..+.... +...|..+...+...|++++|...+++..+.. +. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 344555666666666666666666666554322 45566666666667777777777777766652 12 355666666
Q ss_pred HHHhhc-CCHHHHHHHHHHHHHC
Q 045814 347 HGYCRI-DNLEEAKRLHKEMLDK 368 (427)
Q Consensus 347 ~~~~~~-g~~~~a~~~~~~m~~~ 368 (427)
.+|... |++++|.+.++...+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 667777 7777777777776654
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.24 E-value=2.2e-05 Score=64.52 Aligned_cols=130 Identities=9% Similarity=-0.001 Sum_probs=85.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---------------HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD---------------NFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
.+..+...+...|++++|...|++......... ...+..+..+|.+.|++++|...+++..+...
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 455556666667777777777776665432111 25777788888888888888888888877643
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH-HHHHHHHH
Q 045814 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK-RLHKEMLD 367 (427)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~ 367 (427)
. +...+..+..+|...|++++|...|++..+... -+...+..+..++...++.+++. ..+..+..
T Consensus 120 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 120 N-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2 567788888888888999999999888887632 24566777777777776666665 44555443
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.23 E-value=4.8e-05 Score=57.99 Aligned_cols=95 Identities=17% Similarity=0.002 Sum_probs=42.1
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+..+...+...|++++|...|++..+.... +...|..+..++...|++++|...+++..+... .+...+..+..+|
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 87 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence 34444444444444444444444444433221 333444444444444444444444444444321 1233444444444
Q ss_pred hhcCCHHHHHHHHHHHH
Q 045814 350 CRIDNLEEAKRLHKEML 366 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~ 366 (427)
...|++++|...|+...
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
No 163
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=8.2e-05 Score=69.15 Aligned_cols=194 Identities=12% Similarity=-0.009 Sum_probs=108.9
Q ss_pred HHHHHHcCChHHHHHHHHhc-CCCCC------------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCcC
Q 045814 113 FDSLVEARAFKVAMDFLDST-GFSPN------------------PNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGS 172 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~~-~~~~~------------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~ 172 (427)
...+.+.|++++|.+.+.+. ...|+ ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34556777777777777652 11111 0135566677777777777777776655321 0111
Q ss_pred Hh----hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHH
Q 045814 173 IK----TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE----DGLVP-ENTAFNKLISR 243 (427)
Q Consensus 173 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~ 243 (427)
.. +.+.+... +...|+.+.|.++++.... .+..+ -..++..+...
T Consensus 91 ~~~~~~~~~~l~~~--------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 144 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKF--------------------------EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATL 144 (434)
T ss_dssp HHHHHHHHHHHHHH--------------------------CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH--------------------------HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 11 11111122 2233445555554444332 22222 24466777788
Q ss_pred HHccCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--hhhHHHHHH
Q 045814 244 FCEKKNFGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVPD--TVMYTTVIH 312 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~ 312 (427)
+...|++++|..++++.... +..+ ...++..++..|...|++++|..++++.... +..+. ...+..+..
T Consensus 145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 88888888888888766542 1111 2346777778888888888888888776432 11111 235556666
Q ss_pred HHHccCCHHHHHHHHHHHHH
Q 045814 313 GLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~ 332 (427)
.+...|++++|...+.+..+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 67777888888777766643
No 164
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.21 E-value=8.9e-06 Score=63.83 Aligned_cols=132 Identities=14% Similarity=0.075 Sum_probs=76.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLP-NEY 340 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~ 340 (427)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4455555555666666666666555432100 01 1355556666666677777777666655431 000 133
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYG-ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
++..+...+...|++++|.+.+++..+. +.. .....+..+...|...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 4556666777777777777777766532 111 1134566677777788888888888877654
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.20 E-value=4.2e-05 Score=58.32 Aligned_cols=100 Identities=13% Similarity=-0.018 Sum_probs=87.8
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
.+...|..+...+...|++++|...|++...... .+...+..+..+|...|++++|...++...+... .+...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 3677888899999999999999999999988753 3577899999999999999999999999998643 3678899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 045814 382 AGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.+|...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999998764
No 166
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.20 E-value=2.3e-05 Score=60.48 Aligned_cols=96 Identities=6% Similarity=-0.044 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC 315 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~ 315 (427)
.+..+...+.+.|++++|...|++...... .+...|..+..+|.+.|++++|...|++..+.... +...+..+..+|.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence 344445555556666666666665555432 24455555555666666666666666665554332 3445555555666
Q ss_pred ccCCHHHHHHHHHHHHHc
Q 045814 316 KMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~ 333 (427)
..|++++|...|++..+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666655543
No 167
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.20 E-value=4e-05 Score=60.76 Aligned_cols=99 Identities=6% Similarity=-0.024 Sum_probs=80.0
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347 (427)
Q Consensus 268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 347 (427)
+...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..+++..+... -+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4567778888888899999999999888776543 677888888888888999999999888887742 25677888888
Q ss_pred HHhhcCCHHHHHHHHHHHHHC
Q 045814 348 GYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~~ 368 (427)
+|...|++++|...|++..+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 888889999999888888765
No 168
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.18 E-value=4.1e-05 Score=60.70 Aligned_cols=100 Identities=8% Similarity=-0.002 Sum_probs=82.9
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
+...+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 556788888888899999999999998887743 26778888888999999999999999998877543 5778888888
Q ss_pred HHHccCCHHHHHHHHHHHHHcC
Q 045814 313 GLCKMGWLGDARKMWFEMIHKG 334 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~~ 334 (427)
+|...|++++|...|++..+..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 9999999999999999888763
No 169
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=7.8e-05 Score=57.46 Aligned_cols=95 Identities=14% Similarity=0.092 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL 380 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 380 (427)
..+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 34444444445555555555555554443 222 3344444555555555555555555554432 1134445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..+|...|++++|.+.|++..+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555555554
No 170
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.16 E-value=2e-05 Score=59.32 Aligned_cols=96 Identities=11% Similarity=0.045 Sum_probs=42.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----hhhHHH
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--PD----TVMYTT 309 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~----~~~~~~ 309 (427)
.+..+...+...|++++|...+++..... +.+...+..+...|...|++++|...+++..+.... ++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 34444444455555555555555444432 113344444444444555555555555444332110 01 333444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHH
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
+..++...|++++|...++++.+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 171
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=0.0001 Score=56.73 Aligned_cols=98 Identities=11% Similarity=-0.020 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD----NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~ 308 (427)
+...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|...+++..+.... +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 34445555555555555666655555555442 22 344444555555555555555555555443221 334444
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 309 TVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.+..++...|++++|...+++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 4555555555555555555555443
No 172
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=1.6e-05 Score=62.32 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCC-Ch
Q 045814 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PD----NFTYEEVINGLCKSRKRLEAYRVFNDLKERG----YVP-DT 304 (427)
Q Consensus 235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~ 304 (427)
.++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+.. ..+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35667777777888888888888776653211 11 1467777888888888888888888875431 111 13
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
..+..+...+...|++++|...+++..+. +..+ ...++..+...|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 46777778888889999999988887644 1111 134567778888899999999999888764
No 173
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.09 E-value=0.0046 Score=54.68 Aligned_cols=227 Identities=11% Similarity=0.031 Sum_probs=146.8
Q ss_pred hcCCh-hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCC---hhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHH
Q 045814 150 ESGLI-EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQV 225 (427)
Q Consensus 150 ~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 225 (427)
+.|.+ ++|+++++.+...++. +..+|+.=-..+...+. .+.. ...+++++.+++.+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~-------------------~~~l~~EL~~~~~~ 100 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEES-------------------AALVKAELGFLESC 100 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHH-------------------HHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhh-------------------hHHHHHHHHHHHHH
Confidence 44444 4788888888876444 44555542222221111 0100 11145677777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCC
Q 045814 226 LEDGLVPENTAFNKLISRFCEKK--NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK-RLEAYRVFNDLKERGYVP 302 (427)
Q Consensus 226 ~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p 302 (427)
....++ +..+|+.-...+...+ ++++++.+++.+.+.... |...|+--.-.+...|. ++++++.++++.+..+.
T Consensus 101 L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~- 177 (331)
T 3dss_A 101 LRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS- 177 (331)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-
T ss_pred HHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-
Confidence 776554 6777777666677766 478999999998887643 66777777777777787 58889999998887665
Q ss_pred ChhhHHHHHHHHHcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-----------CCHHH
Q 045814 303 DTVMYTTVIHGLCKM--------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI-----------DNLEE 357 (427)
Q Consensus 303 ~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~ 357 (427)
|...|+.....+... +.++++++.+++....... |...|+-+-..+.+. +.+++
T Consensus 178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~ 256 (331)
T 3dss_A 178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQS 256 (331)
T ss_dssp CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence 777777666655544 4578888888888877433 666666444444333 45788
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 045814 358 AKRLHKEMLDKGYGETTVTYNTLIA-----GLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 358 a~~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+.+.++++.+. .||. .|..+-. +....|..+++...+.++.+.
T Consensus 257 el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 257 ELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 88999988875 4553 3432222 222467788899999998874
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=1.7e-05 Score=74.91 Aligned_cols=121 Identities=8% Similarity=-0.045 Sum_probs=93.0
Q ss_pred hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 284 (427)
+...+.+.|++++|.+.+++..+.... +..+|..+..+|.+.|++++|.+.+++..+... .+...+..+..+|.+.|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 445667788899999999988876443 678899999999999999999999999988753 356788889999999999
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHccCCHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHG--LCKMGWLGDARKMWF 328 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 328 (427)
+++|.+.|++..+.... +...+..+..+ +.+.|++++|...++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999998876432 34455555555 778899999999988
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.05 E-value=1.6e-05 Score=75.15 Aligned_cols=116 Identities=10% Similarity=-0.018 Sum_probs=50.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 359 (427)
.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|...+++..+... -+..++..+..+|...|++++|.
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444555555555544443221 344444455555555555555555555544421 13344444555555555555555
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 045814 360 RLHKEMLDKGYGETTVTYNTLIAG--LCLHGRTDEAYHLFE 398 (427)
Q Consensus 360 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 398 (427)
+.+++..+... -+...+..+..+ +.+.|++++|.+.++
T Consensus 95 ~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 95 RDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555444311 122233333333 444455555555544
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.04 E-value=4.9e-05 Score=56.85 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=34.7
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 045814 312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391 (427)
Q Consensus 312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 391 (427)
..+.+.|++++|...+++..+... .+...+..+..++...|++++|...|++..+.... +...+..+..+|...|+++
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence 333344444444444444443321 12333333444444444444444444444433111 2333344444444444444
Q ss_pred HHHHHHHHHH
Q 045814 392 EAYHLFEEMA 401 (427)
Q Consensus 392 ~A~~~~~~m~ 401 (427)
+|...+++..
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
No 177
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.04 E-value=6.1e-05 Score=70.77 Aligned_cols=88 Identities=10% Similarity=-0.020 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL 384 (427)
Q Consensus 305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 384 (427)
..|..+..+|.+.|++++|+..++++.+... .+...|..+..+|...|++++|...|++..+... -+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3445555555555555555555555555421 1344555555555555555555555555554321 1334455555555
Q ss_pred HhcCCHHHHH
Q 045814 385 CLHGRTDEAY 394 (427)
Q Consensus 385 ~~~g~~~~A~ 394 (427)
.+.|+.++|.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 178
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.03 E-value=0.0012 Score=58.40 Aligned_cols=193 Identities=9% Similarity=-0.044 Sum_probs=138.9
Q ss_pred HhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 045814 210 CNDGKVS-EGYELLRQVLEDGLVPENTAFNKLISRFCEKKN----------FGRVSELLHTMVARNRAPDNFTYEEVING 278 (427)
Q Consensus 210 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 278 (427)
.+.|.++ +|+++++.+....+. +..+|+.--..+...+. +++++.+++.+....++ +..+|+.-.-.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445544 788888888876544 44455543333333222 67888999998887543 66778777777
Q ss_pred HHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---
Q 045814 279 LCKSR--KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW-LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI--- 352 (427)
Q Consensus 279 ~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--- 352 (427)
+.+.+ .+++++.+++++.+...+ |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 77777 489999999999988665 78888888877888888 59999999999988654 777787766555544
Q ss_pred -----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCH
Q 045814 353 -----------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH-----------GRTDEAYHLFEEMAQKGIFRDV 409 (427)
Q Consensus 353 -----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~ 409 (427)
+.++++.+.++........ |...|+-+-..+.+. +.++++++.++++.+. .||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 4578899999998876433 677777555555544 4578999999999885 5554
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.03 E-value=5.3e-05 Score=56.65 Aligned_cols=97 Identities=10% Similarity=-0.146 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
..+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..+++..+.... +...+..+..+|
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 35666778889999999999999999887543 7778889999999999999999999999987432 567888899999
Q ss_pred hhcCCHHHHHHHHHHHHHC
Q 045814 350 CRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~m~~~ 368 (427)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998865
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.03 E-value=0.00017 Score=54.15 Aligned_cols=91 Identities=10% Similarity=-0.079 Sum_probs=41.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKERGYVPDT---VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHG 348 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 348 (427)
+...+.+.|++++|...|+.+.+.... +. ..+..+..++.+.|++++|...++++.+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 334444555555555555555443211 11 23444444455555555555555554443211 1 2334444444
Q ss_pred HhhcCCHHHHHHHHHHHHH
Q 045814 349 YCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~ 367 (427)
+...|++++|...|+.+.+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 4455555555555554444
No 181
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.00 E-value=0.00049 Score=66.26 Aligned_cols=171 Identities=6% Similarity=-0.087 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-
Q 045814 250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK----------RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG- 318 (427)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g- 318 (427)
.++|++.++++...+.. +..+|+.--..+...|+ ++++.+.++.+.+...+ +..+|+.-.-.+.+.|
T Consensus 45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 34556666666655322 33445444444444444 67777777777666544 5666666666666666
Q ss_pred -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---------
Q 045814 319 -WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH--------- 387 (427)
Q Consensus 319 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------- 387 (427)
+++++++.++++.+.... |..+|+.-...+.+.| .++++.+.++++.+.... |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~ 200 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ 200 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence 557777777777776543 5666666666666666 677777777777665433 566666666655542
Q ss_pred -----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 388 -----GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 388 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+.++++++.+++....... |...|..+-..+.+.|+.
T Consensus 201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence 4467777777777764322 456666665555555543
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.00 E-value=1.6e-05 Score=59.04 Aligned_cols=85 Identities=8% Similarity=-0.014 Sum_probs=41.3
Q ss_pred cCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814 282 SRKRLEAYRVFNDLKERGY--VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 359 (427)
.|++++|+..|++..+.+. +-+...+..+..+|...|++++|...+++..+.... +..++..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 3555555555555555421 112334555555555555555555555555554321 3444555555555555555555
Q ss_pred HHHHHHHH
Q 045814 360 RLHKEMLD 367 (427)
Q Consensus 360 ~~~~~m~~ 367 (427)
..+++..+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
No 183
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.96 E-value=0.00042 Score=51.93 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=44.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHH
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAG 383 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~ 383 (427)
+...+...|++++|...++++.+.... +. ..+..+..++...|++++|...++...+.... + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence 334444555555555555555543211 11 24444445555555555555555555543211 1 3334445555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 045814 384 LCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 384 ~~~~g~~~~A~~~~~~m~~~ 403 (427)
|...|++++|.+.|+++.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 55555555555555555543
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.95 E-value=9.5e-05 Score=69.44 Aligned_cols=132 Identities=8% Similarity=-0.029 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--------------HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--------------NFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 299 (427)
...|..+...+.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 44677777788888888888888888776532211 4778888899999999999999999998875
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH-HHHHHHH
Q 045814 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR-LHKEMLD 367 (427)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~ 367 (427)
.. +...|..+..+|...|++++|...|+++.+... -+...+..+..++.+.++.+++.+ ++..|..
T Consensus 348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43 677888899999999999999999999987632 245677888888888888877664 4555543
No 185
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.95 E-value=3.4e-05 Score=72.63 Aligned_cols=126 Identities=6% Similarity=-0.086 Sum_probs=91.8
Q ss_pred HHHhcCChHHHHHHHHHHHhC-----CC-CC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCC-HHHHH
Q 045814 278 GLCKSRKRLEAYRVFNDLKER-----GY-VP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-----G-LLPN-EYTYN 343 (427)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~ 343 (427)
.+...|++++|+.++++..+. |. .| ...+++.|..+|...|++++|+.++++..+. | -.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355788999999888887542 21 12 2457888899999999999999988887643 2 1233 45788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 344 SMIHGYCRIDNLEEAKRLHKEMLDK-----GYG-ET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 344 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
.|...|...|++++|+.++++..+. |.. |+ ..+.+.+-.++...|.+++|..+|+.+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999998877642 321 22 345566677788889999999999998774
No 186
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.94 E-value=2.6e-05 Score=57.90 Aligned_cols=86 Identities=8% Similarity=-0.037 Sum_probs=45.4
Q ss_pred cCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 045814 247 KKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324 (427)
Q Consensus 247 ~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (427)
.|++++|+..|++..+.+. +.+...+..+...|.+.|++++|...|++..+.... +...+..+..++.+.|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 3555555555555555431 112345555555666666666666666666554332 3455555666666666666666
Q ss_pred HHHHHHHHc
Q 045814 325 KMWFEMIHK 333 (427)
Q Consensus 325 ~~~~~m~~~ 333 (427)
..+++....
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.92 E-value=0.0002 Score=56.48 Aligned_cols=98 Identities=18% Similarity=0.135 Sum_probs=55.7
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKER--------GY---------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
..+......+.+.|++++|...|.+..+. .. .-+...|..+..+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 45566667777777777777777776543 00 00223455555555566666666666666555
Q ss_pred cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.. +.+...|..+..+|...|++++|...|+...+.
T Consensus 92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 43 223445555555566666666666666555553
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.91 E-value=0.00011 Score=66.71 Aligned_cols=90 Identities=11% Similarity=-0.018 Sum_probs=56.2
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383 (427)
Q Consensus 304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 383 (427)
...|..+..+|.+.|++++|+..+++..+... -+...+..+..+|...|++++|...|++..+... -+...+..+...
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~ 350 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 44666666677777777777777777766532 2455666666777777777777777777666421 245555555666
Q ss_pred HHhcCCHHHHHH
Q 045814 384 LCLHGRTDEAYH 395 (427)
Q Consensus 384 ~~~~g~~~~A~~ 395 (427)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666665555543
No 189
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=0.00072 Score=51.71 Aligned_cols=112 Identities=9% Similarity=-0.111 Sum_probs=69.7
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHH
Q 045814 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEA 358 (427)
Q Consensus 283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a 358 (427)
+++++|.+.|++..+.|. |+. . +...|...+.+++|...|++..+.| +...+..+-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 355666666666666652 222 2 4555555556666777777766654 44555566666655 5677777
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 045814 359 KRLHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGI 405 (427)
Q Consensus 359 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 405 (427)
.+.|++..+.| +...+..|...|.. .++.++|.+.|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 77777776654 55666666666666 6677777777777766653
No 190
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.85 E-value=0.00016 Score=65.73 Aligned_cols=123 Identities=7% Similarity=-0.045 Sum_probs=91.6
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhC--------------CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVAR--------------NR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
.+..+...+.+.|++++|.+.|++..+. .. ..+...|..+..+|.+.|++++|...+++..+...
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence 4566666777777777777777766651 01 12346788888899999999999999999988754
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814 301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR 360 (427)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~ 360 (427)
. +...|..+..+|...|++++|...|+++.+... -+...+..+..++...++.+++.+
T Consensus 305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 677888889999999999999999999988642 255666777777777776666654
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.84 E-value=0.00027 Score=55.70 Aligned_cols=100 Identities=9% Similarity=0.028 Sum_probs=76.2
Q ss_pred CHHHHHHHHHHHHccCChhHHHHHHHHHhhC--------CC---------CCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814 233 ENTAFNKLISRFCEKKNFGRVSELLHTMVAR--------NR---------APDNFTYEEVINGLCKSRKRLEAYRVFNDL 295 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 295 (427)
....+......+.+.|++++|...|.+.... .. +.+...|..+..+|.+.|++++|...+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777778888888888888888877764 10 112356777888888888888888888888
Q ss_pred HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.+.... +...|..+..+|...|++++|...|++..+.
T Consensus 90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 776433 5677888888888888888888888888876
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=0.00012 Score=68.80 Aligned_cols=132 Identities=8% Similarity=-0.065 Sum_probs=88.9
Q ss_pred HHHhcCChhHHHHHHHHHHhcC---CCc----CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814 147 CLCESGLIEEAFCAFSKLKEMG---VFG----SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY 219 (427)
Q Consensus 147 ~~~~~~~~~~A~~~~~~m~~~g---~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~ 219 (427)
.+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|..++++. +
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-------------------L 378 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM-------------------V 378 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------H
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------H
Confidence 3567899999999998776431 111 3467888888888888888888886644 3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh-----CCC-CCCH-hhHHHHHHHHHhcCChHHHHHHH
Q 045814 220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA-----RNR-APDN-FTYEEVINGLCKSRKRLEAYRVF 292 (427)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~ 292 (427)
+++++.......-...+++.|...|...|++++|+.++++..+ .|. .|++ .+.+.+-.++...+++++|+.+|
T Consensus 379 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~ 458 (490)
T 3n71_A 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY 458 (490)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333222455788899999999999999988887654 232 2222 34455556666677777777777
Q ss_pred HHHHh
Q 045814 293 NDLKE 297 (427)
Q Consensus 293 ~~m~~ 297 (427)
.++.+
T Consensus 459 ~~~~~ 463 (490)
T 3n71_A 459 HKMRE 463 (490)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.77 E-value=0.00097 Score=64.19 Aligned_cols=174 Identities=10% Similarity=-0.069 Sum_probs=132.8
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 045814 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN----------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283 (427)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 283 (427)
..++|++.++++...... +..+|+.--.++...|+ ++++.+.++.+.+...+ +..+|+.-.-.+.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 346778888888876554 55667666566666666 89999999999887644 6678887777888888
Q ss_pred --ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc--------
Q 045814 284 --KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG-WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI-------- 352 (427)
Q Consensus 284 --~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-------- 352 (427)
+++++.+.++++.+.... +..+|+.-...+.+.| ..+++++.++++.+.... |...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 669999999999988665 7888888888888888 889999999999887544 677787766665553
Q ss_pred ------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814 353 ------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE 392 (427)
Q Consensus 353 ------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~ 392 (427)
+.++++.+.++........ |...|.-+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999988876433 67788887777777776443
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.75 E-value=0.0001 Score=66.22 Aligned_cols=149 Identities=7% Similarity=-0.015 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 313 (427)
...+..+...+.+.|++++|...|++..... |+... +...++.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 4566777777788888888888888877652 33221 222333333332221 1367778888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHH
Q 045814 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG-LCLHGRTDE 392 (427)
Q Consensus 314 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~ 392 (427)
|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+... ....+..++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~ 317 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK 317 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999888764 23567888888889999999999999988876521 134445555444 234566777
Q ss_pred HHHHHHHHHHC
Q 045814 393 AYHLFEEMAQK 403 (427)
Q Consensus 393 A~~~~~~m~~~ 403 (427)
+..+|+.|...
T Consensus 318 a~~~~~~~l~~ 328 (338)
T 2if4_A 318 QKEMYKGIFKG 328 (338)
T ss_dssp -----------
T ss_pred HHHHHHHhhCC
Confidence 88888888754
No 195
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.74 E-value=0.00027 Score=54.92 Aligned_cols=94 Identities=14% Similarity=0.038 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhc-----C
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-------------PNSLELYIQCLCESGLIEEAFCAFSKLKEM-----G 168 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g 168 (427)
.+......+.+.|++++|...|++ +.+.|+ ...|+.+..++.+.|++++|+..|++..+. .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 344456667788888888888876 333333 238888999999999999999999998875 1
Q ss_pred CCc-CHhhH----HHHHHHHHHcCChhHHHHHHHHHHh
Q 045814 169 VFG-SIKTW----NSALLGCIKIDRTDLVWKLYHDLIE 201 (427)
Q Consensus 169 ~~p-~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~ 201 (427)
+.| +...| .....++...|++++|+..|+..++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 133 45677 7788888888888888888877665
No 196
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.73 E-value=0.0012 Score=51.27 Aligned_cols=62 Identities=15% Similarity=0.161 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CCCCC-hhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDK-----GYGET-TVTY----NTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.|..+..++.+.|++++|...+++.++. .+.|+ ...| .....++...|++++|+..|++..+
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5555555666666666666666655543 11333 3455 6666666667777777776666654
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=0.00011 Score=66.01 Aligned_cols=149 Identities=10% Similarity=0.009 Sum_probs=82.6
Q ss_pred HHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 045814 198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277 (427)
Q Consensus 198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 277 (427)
.......+...+.+.|++++|...|++..... |+.. .+...++.+++...+. ...|..+..
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 33344457788889999999999999988743 3322 1223334444333221 136777888
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HhhcCCH
Q 045814 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHG-YCRIDNL 355 (427)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~ 355 (427)
+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 888999999999999988776432 6678888888999999999999999888765 333 3344444443 2334566
Q ss_pred HHHHHHHHHHHHC
Q 045814 356 EEAKRLHKEMLDK 368 (427)
Q Consensus 356 ~~a~~~~~~m~~~ 368 (427)
+++..+|..|...
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 7777888877654
No 198
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.0007 Score=51.79 Aligned_cols=109 Identities=8% Similarity=-0.101 Sum_probs=47.3
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHHH
Q 045814 214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAY 289 (427)
Q Consensus 214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~ 289 (427)
++++|+++|++..+.|.. + .. |-..|...+..++|.+.|++..+.| +...+..+-..|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 344555555555544421 1 11 3333444444444555555444443 23344444444444 44444444
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 045814 290 RVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHK 333 (427)
Q Consensus 290 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 333 (427)
+.|++..+.| +...+..+...|.. .++.++|...|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4444444432 23333444444443 34444444444444444
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.53 E-value=0.0011 Score=47.97 Aligned_cols=89 Identities=13% Similarity=0.077 Sum_probs=56.1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-------hh
Q 045814 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-------TV 375 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~ 375 (427)
+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 44566667777777777777777777777653 2255667777777777777777777777777642 33 33
Q ss_pred hHHHHHHHHHhcCCHHHHH
Q 045814 376 TYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~ 394 (427)
.+..+..++...|+.+.|.
T Consensus 80 ~~~~~~~~~~~~~~~~~a~ 98 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPV 98 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCS
T ss_pred HHHHHHHHHHHHHhHhhhH
Confidence 3444444444444444443
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.43 E-value=0.00014 Score=52.83 Aligned_cols=65 Identities=22% Similarity=0.133 Sum_probs=43.3
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
+...+..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++..+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445666666777777777777777777665332 5556666777777777777777777777654
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.41 E-value=0.00087 Score=49.14 Aligned_cols=62 Identities=11% Similarity=-0.016 Sum_probs=28.2
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331 (427)
Q Consensus 269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 331 (427)
...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444443221 23344444444444555555555444444
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.38 E-value=0.0015 Score=47.83 Aligned_cols=80 Identities=6% Similarity=-0.033 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
+|...|++..+.... +...+..+...|...|++++|...+++..+... .+...+..+..+|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456666766665432 566777777777777888888888777776532 245567777777777777777777777766
Q ss_pred HC
Q 045814 367 DK 368 (427)
Q Consensus 367 ~~ 368 (427)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0032 Score=43.44 Aligned_cols=61 Identities=15% Similarity=0.271 Sum_probs=28.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444555555555555444432 11334444455555555555555555555444
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.34 E-value=0.0023 Score=44.19 Aligned_cols=25 Identities=12% Similarity=0.181 Sum_probs=9.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHH
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMI 331 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~ 331 (427)
+..+...+.+.|++++|...+++..
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 46 WYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3333333333344444444433333
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.21 E-value=0.002 Score=45.85 Aligned_cols=64 Identities=16% Similarity=0.105 Sum_probs=37.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
+...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555666666666666666666666655322 344555566666666666666666665543
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.20 E-value=0.0011 Score=51.48 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=65.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL----------GDARKMWFEMIHKGLLPNEYTYNSMIHGY 349 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 349 (427)
.+.+.+++|.+.++...+.... +...|..+..++...+++ ++|+..|++.++.... +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 4556677888888887776544 667777777777777654 4777777777776422 456777777777
Q ss_pred hhcC-----------CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814 350 CRID-----------NLEEAKRLHKEMLDKGYGETTVTYNTLI 381 (427)
Q Consensus 350 ~~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li 381 (427)
...| ++++|.+.|++..+. .|+...|...+
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al 131 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 7664 677777777777764 45554444333
No 207
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.19 E-value=0.00096 Score=51.73 Aligned_cols=99 Identities=10% Similarity=0.009 Sum_probs=65.5
Q ss_pred HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR----------LEAYRVFNDLKERGYVPDTVMYTTVIHGL 314 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (427)
.+.+.+++|.+.++...+.... +...|..+..++...+++ ++|+..|++..+.... +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence 3445577777777777766432 566777777777776654 4777777777776543 556777777777
Q ss_pred HccC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814 315 CKMG-----------WLGDARKMWFEMIHKGLLPNEYTYNSMIH 347 (427)
Q Consensus 315 ~~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 347 (427)
...| ++++|...|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 7664 677888888877775 556555544433
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.09 E-value=0.0034 Score=44.69 Aligned_cols=64 Identities=22% Similarity=0.123 Sum_probs=46.0
Q ss_pred CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045814 137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201 (427)
Q Consensus 137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 201 (427)
+...+..+..+|...|++++|+..|++..+.... +...|..+..+|...|++++|...|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4566777777777788888888888777776443 556777777777777777777777776653
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.04 E-value=0.0017 Score=60.00 Aligned_cols=87 Identities=5% Similarity=-0.120 Sum_probs=64.5
Q ss_pred ccCCHHHHHHHHHHHHHc---CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CC-CCC-hhhHHHHH
Q 045814 316 KMGWLGDARKMWFEMIHK---GLL---PN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-----GY-GET-TVTYNTLI 381 (427)
Q Consensus 316 ~~g~~~~a~~~~~~m~~~---~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~li 381 (427)
..|++++|+.++++..+. -+. |+ ..+++.+..+|...|++++|+.++++..+. |- .|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457888888888887653 111 22 357888888999999999999988887643 21 222 46788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 045814 382 AGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 382 ~~~~~~g~~~~A~~~~~~m~~ 402 (427)
..|...|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999888765
No 210
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.98 E-value=0.0025 Score=58.91 Aligned_cols=92 Identities=13% Similarity=-0.014 Sum_probs=65.8
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----C-CCCC-hhh
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKG---LLP----NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-----G-YGET-TVT 376 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~ 376 (427)
+..+.+.|++++|+.++++..+.. +.| ...+++.+...|...|++++|+.++++..+. | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556788888888888877541 111 2346788888888888888888888877642 2 1122 457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 377 YNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 377 ~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888888889999988888887654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.91 E-value=0.022 Score=50.71 Aligned_cols=73 Identities=12% Similarity=-0.032 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814 336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY 412 (427)
Q Consensus 336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 412 (427)
..+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...||
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 3455666666666666677777777777777764 56666666677777777777777777776664 4555554
No 212
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.76 E-value=0.0047 Score=57.06 Aligned_cols=94 Identities=12% Similarity=-0.006 Sum_probs=64.2
Q ss_pred hcCChhHHHHHHHHHHhc---CCCc----CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHH
Q 045814 150 ESGLIEEAFCAFSKLKEM---GVFG----SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELL 222 (427)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 222 (427)
..|++++|+.++++..+. -+.| ...+++.|..+|...|++++|+.++++.+ +++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-------------------~i~ 370 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII-------------------KPY 370 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-------------------HHH
Confidence 356788888888877642 1122 24677888888888888888888766443 444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814 223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262 (427)
Q Consensus 223 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 262 (427)
++.......-...+++.|...|...|++++|+.++++..+
T Consensus 371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4443322222345788888999999999999988887654
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.71 E-value=0.0056 Score=56.59 Aligned_cols=92 Identities=10% Similarity=0.003 Sum_probs=70.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCC-HHH
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERG---YVP----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-----G-LLPN-EYT 341 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~ 341 (427)
+..+.+.|++++|+.++++..+.. .-| ...+++.+..+|...|++++|+.+++++... | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667889999999999887531 112 2457888999999999999999999987643 2 2233 357
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88899999999999999999988764
No 214
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.69 E-value=0.038 Score=43.43 Aligned_cols=100 Identities=14% Similarity=0.154 Sum_probs=60.0
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814 148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE 227 (427)
Q Consensus 148 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 227 (427)
..+.|+++.|.++.+.+ -+...|..|.......|+++-|.+.|......+.+.-.|.-.|+.+....+-+....
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~ 88 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQT 88 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33456666666665544 145566666666666666666666666666666666666666666655555444444
Q ss_pred CCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814 228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259 (427)
Q Consensus 228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 259 (427)
.| -++.....+.-.|+++++.++|.+
T Consensus 89 ~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 89 RE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 43 245555556666777777777643
No 215
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.55 E-value=0.036 Score=55.81 Aligned_cols=115 Identities=13% Similarity=0.084 Sum_probs=63.9
Q ss_pred HHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHH
Q 045814 114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW 193 (427)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~ 193 (427)
....+.|+++.|+++.+.. .+...|..+...+.+.++++.|.+.|.++.. |..+...+...++.+...
T Consensus 660 ~~~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~ 727 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV 727 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence 3445667777777776554 3567777788888888888888888777643 334444444455555444
Q ss_pred HHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814 194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT 259 (427)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 259 (427)
++-+. ....|+++.|...+...- -+...+..|.+.+++++|..+-+.
T Consensus 728 ~~~~~----------a~~~~~~~~A~~~~~~~g---------~~~~a~~~~~~~~~~~~A~~lA~~ 774 (814)
T 3mkq_A 728 TLAKD----------AETTGKFNLAFNAYWIAG---------DIQGAKDLLIKSQRFSEAAFLGST 774 (814)
T ss_dssp HHHHH----------HHHTTCHHHHHHHHHHHT---------CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH----------HHHcCchHHHHHHHHHcC---------CHHHHHHHHHHcCChHHHHHHHHH
Confidence 43333 333444444444433221 133344555555566665555443
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.44 E-value=0.02 Score=57.62 Aligned_cols=130 Identities=11% Similarity=0.077 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC
Q 045814 108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID 187 (427)
Q Consensus 108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 187 (427)
....++..+.+.|.++.|.++.+. . ..-.......|++++|.++.+.+ .+...|..+...+.+.+
T Consensus 631 ~~~~~~~~l~~~~~~~~a~~~~~~------~---~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 631 SLTKIARFLEGQEYYEEALNISPD------Q---DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCC------H---HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCChHHheecCCC------c---chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence 337777888888888888876532 1 11133456679999998886543 36788999999999999
Q ss_pred ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814 188 RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH 258 (427)
Q Consensus 188 ~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 258 (427)
+++.|.+.|..+.....+...+...|+.+...++-+.....| -++....+|.+.|++++|.+++.
T Consensus 696 ~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 696 NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence 999999888877666666666666666665555444444433 12333334444555555555544
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.26 E-value=0.013 Score=41.23 Aligned_cols=52 Identities=13% Similarity=0.091 Sum_probs=21.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
.+.|++++|...|++..+.... +.. .|..+..+|...|++++|...|++..+
T Consensus 11 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 11 INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3344444444444444333211 223 333444444444444444444444443
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.25 E-value=0.27 Score=42.05 Aligned_cols=83 Identities=11% Similarity=-0.007 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CCHHH
Q 045814 252 RVSELLHTMVARNRAPD---NFTYEEVINGLCKS-----RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM-GWLGD 322 (427)
Q Consensus 252 ~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~ 322 (427)
.|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.++
T Consensus 181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 444455555444 222 34555555555553 56666666666665553321244555555555553 56666
Q ss_pred HHHHHHHHHHcCCC
Q 045814 323 ARKMWFEMIHKGLL 336 (427)
Q Consensus 323 a~~~~~~m~~~~~~ 336 (427)
+.+.+++.......
T Consensus 259 a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 259 FDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHCCGG
T ss_pred HHHHHHHHHcCCCC
Confidence 66666666655444
No 219
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.22 E-value=0.24 Score=36.73 Aligned_cols=139 Identities=10% Similarity=0.070 Sum_probs=70.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC
Q 045814 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED 228 (427)
Q Consensus 149 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 228 (427)
.-.|.+++..++..+.... .+..-||..+--....-+.+-..+.++.+-+. .-....|++......+-.+-
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FDis~C~NlKrVi~C~~~~n-- 88 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FDLDKCQNLKSVVECGVINN-- 88 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SCGGGCSCTHHHHHHHHHTT--
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCcHhhhcHHHHHHHHHHhc--
Confidence 3456777777777776653 24555666666666666666555555544321 00122333333333222211
Q ss_pred CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814 229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY 300 (427)
Q Consensus 229 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 300 (427)
.+...++..++.+..+|+.++-.+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus 89 ---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 89 ---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp ---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 1333444555555555665555555555432 2244455555555556666666666665555555554
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.20 E-value=0.63 Score=41.43 Aligned_cols=48 Identities=10% Similarity=-0.074 Sum_probs=27.4
Q ss_pred CCCHHhHHHHHHHHH--hcC---ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814 135 SPNPNSLELYIQCLC--ESG---LIEEAFCAFSKLKEMGVFGSIKTWNSALLGC 183 (427)
Q Consensus 135 ~~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 183 (427)
+.+...|...+++.. ..+ ...+|..+|++..+..+. ....|..+.-+|
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~ 243 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVD 243 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 445667777665543 333 357888888888876333 344444433333
No 221
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.98 E-value=0.32 Score=36.07 Aligned_cols=140 Identities=13% Similarity=0.057 Sum_probs=90.9
Q ss_pred HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 045814 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (427)
.-.|..++..++..+..... +..-||.+|--....-+-+-..++++.+-+. .|.. ..|++....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34677888888888776653 4455666665555556666666666665332 2322 233333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045814 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404 (427)
Q Consensus 325 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 404 (427)
.-+-.+- .+...++..+.....+|.-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.-++|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 3332221 1334556667777888888888888888654 346778888888889999999999999999888888
Q ss_pred CC
Q 045814 405 IF 406 (427)
Q Consensus 405 ~~ 406 (427)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 222
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.43 Score=37.44 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=29.9
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcC
Q 045814 72 DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG 133 (427)
Q Consensus 72 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 133 (427)
|+..-..+.-..++.+.|.++.+.+ -+...|..|.+...+.|+++-|.+.|.+.+
T Consensus 7 D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 7 DPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 3444334444556666666555544 235556666666666666666666665543
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.92 E-value=0.13 Score=39.33 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG---WLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAK 359 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~ 359 (427)
...+.+-|.+..+.|. ++..+.-.+..++++.+ +.+++..++++..+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4455555555555444 35555555666666665 4556777777666653 23 2333444445556777777777
Q ss_pred HHHHHHHHC
Q 045814 360 RLHKEMLDK 368 (427)
Q Consensus 360 ~~~~~m~~~ 368 (427)
++++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 777776664
No 224
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.89 E-value=0.083 Score=36.81 Aligned_cols=58 Identities=16% Similarity=0.194 Sum_probs=43.4
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEY-TYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
....+.+.|++++|...++++.+... .+.. .+..+..+|...|++++|.+.|++..+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 44566778888888888888877632 2455 7777777888888888888888888775
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.71 E-value=0.12 Score=35.85 Aligned_cols=65 Identities=11% Similarity=0.013 Sum_probs=33.5
Q ss_pred ChhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 303 DTVMYTTVIHGLCKMGW---LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 303 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
|...+..+..++...++ .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34444444544433322 45666666665554321 3444555555555566666666666665554
No 226
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.39 E-value=0.16 Score=35.35 Aligned_cols=48 Identities=6% Similarity=0.042 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.++|..++++..+.... ++.....+...+.+.|++++|...|+++.+.
T Consensus 25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34555555555444322 3344444445555555555555555555544
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.33 E-value=0.32 Score=37.16 Aligned_cols=80 Identities=16% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 045814 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID---NLEEAKRLHKEMLDKGYGE--TTVTYNTLIAGLCLHGRTDEAYH 395 (427)
Q Consensus 321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~ 395 (427)
..+.+-|.+....|. ++..+-..+..++++.+ +++++..++++..+.+ .| +...+-.|.-+|.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 334444444444332 34444444444444444 3445555555554432 12 12233333344455555555555
Q ss_pred HHHHHHH
Q 045814 396 LFEEMAQ 402 (427)
Q Consensus 396 ~~~~m~~ 402 (427)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 5555554
No 228
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.31 E-value=0.19 Score=43.03 Aligned_cols=92 Identities=8% Similarity=-0.007 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-CCH
Q 045814 285 RLEAYRVFNDLKERGYVPD---TVMYTTVIHGLCKM-----GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI-DNL 355 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~ 355 (427)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777765 344 45788888888874 88888888888888864322356677777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CChhhHH
Q 045814 356 EEAKRLHKEMLDKGYG--ETTVTYN 378 (427)
Q Consensus 356 ~~a~~~~~~m~~~~~~--p~~~~~~ 378 (427)
+.+.+.+++....... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888887554 5544333
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.13 E-value=0.34 Score=36.70 Aligned_cols=53 Identities=8% Similarity=0.083 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045814 353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406 (427)
Q Consensus 353 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 406 (427)
+++++|.++|+.+.+.+-.- ...|-...+--.+.|+.++|.+++.+....+.+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554431111 444444444445555555555555555555444
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.83 E-value=0.25 Score=35.02 Aligned_cols=62 Identities=6% Similarity=-0.039 Sum_probs=28.2
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCC------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARN------RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 297 (427)
.+..+...+.+.+++..|...|+...+.. ..+....+..+..+|.+.|+++.|...++++.+
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34444555555555555555555444321 011223444444444445555555554444443
No 231
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.44 E-value=0.46 Score=33.63 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
..+..+..+|.+.|+++.|..++++..+
T Consensus 47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 47 SVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3444444444445555555554444443
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.38 E-value=0.49 Score=35.82 Aligned_cols=102 Identities=9% Similarity=0.093 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHHccCCh------hHHHHHHHHHhhCCCCCCHh-hHHHHHHH------HHhcCChHHHHHHHHHHHhCC
Q 045814 233 ENTAFNKLISRFCEKKNF------GRVSELLHTMVARNRAPDNF-TYEEVING------LCKSRKRLEAYRVFNDLKERG 299 (427)
Q Consensus 233 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~ll~~------~~~~~~~~~a~~~~~~m~~~~ 299 (427)
|..+|-..+...-+.|+. ++..++|++.... ++|+.. .|...+.. +...+++++|.++|+.+...+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666666 6666777766654 344321 11111110 112355556666666554432
Q ss_pred CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 045814 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336 (427)
Q Consensus 300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 336 (427)
-+. ...|....+--.+.|+++.|.+++......+.+
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 222 444444444455556666666666655555444
No 233
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.36 E-value=0.84 Score=41.35 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=41.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCChhh
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK-----ERGYVPDTVM 306 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~ 306 (427)
...++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|.+.|+... +.|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445555666666666666666665543 2355566666667777777766666666653 2366665543
No 234
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.53 E-value=0.48 Score=34.82 Aligned_cols=22 Identities=14% Similarity=0.102 Sum_probs=11.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 045814 381 IAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 381 i~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.-++.+.|++++|.+.++.+.+
T Consensus 81 Avg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 81 AVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHH
Confidence 3344455555555555555544
No 235
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.87 E-value=1.6 Score=30.31 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814 319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382 (427)
Q Consensus 319 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 382 (427)
+.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++-++.+ +.+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34455555555555566666666666666666666666666666655543 2223334554443
No 236
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.83 E-value=0.0075 Score=55.17 Aligned_cols=204 Identities=13% Similarity=0.042 Sum_probs=139.2
Q ss_pred CCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814 104 PDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG 182 (427)
Q Consensus 104 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 182 (427)
-|+..|..++.+..+.|.+++....+.-. ....++..=+.|+.+|++.++..+-++++ -.|+..-...+.+-
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr 153 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR 153 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence 36777888888888888888888877642 22345556677888888888877655443 23666667778888
Q ss_pred HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814 183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262 (427)
Q Consensus 183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 262 (427)
|-..|.++.|.-+|..+....-|...+.+.|++..|.+.-++ .-++.||..+-.+|...+.+.-|.-.--.++-
T Consensus 154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 888888888888888888777888888888988888654322 23667899999999998888766544333322
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 045814 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327 (427)
Q Consensus 263 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 327 (427)
.. .-...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+-+
T Consensus 228 ha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 228 HA-----DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp CS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred cH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 21 122345566777888888888887765321 23556777777777764 344444433
No 237
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.80 E-value=0.72 Score=45.42 Aligned_cols=54 Identities=9% Similarity=-0.005 Sum_probs=42.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA 401 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 401 (427)
+.|...|+++.|.++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456678888898888888775 23357888899999999999999988888774
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.73 E-value=0.56 Score=42.54 Aligned_cols=69 Identities=12% Similarity=0.033 Sum_probs=36.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CCCCCChh
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-----KGYGETTV 375 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~ 375 (427)
+...++.++...|+.++|...+..+.... +-+...+..+|.++.+.|+..+|.+.|+.+.+ .|+.|+..
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 33444455555566666665555555442 23455566666666666666666666555432 25555544
No 239
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.60 E-value=9.7 Score=38.51 Aligned_cols=298 Identities=9% Similarity=0.016 Sum_probs=153.4
Q ss_pred HHcCChHHHHHHHHhcCC---CCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhcCC-------CcCHhhHHHHHHHHH
Q 045814 117 VEARAFKVAMDFLDSTGF---SPNPN--SLELYIQCLCESGLIEEAFCAFSKLKEMGV-------FGSIKTWNSALLGCI 184 (427)
Q Consensus 117 ~~~~~~~~a~~~~~~~~~---~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~~~ 184 (427)
...|+.++++.++++.-. ..+.. .-..+.-+....|..+++..++.......- .+....-.++.-+++
T Consensus 385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 345666777777766321 12222 223334445556665667776666554211 011222233333333
Q ss_pred HcCCh-hHHHHHHHHHHhc-ch---------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChh
Q 045814 185 KIDRT-DLVWKLYHDLIES-GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR--FCEKKNFG 251 (427)
Q Consensus 185 ~~~~~-~~a~~~~~~~~~~-~~---------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~ 251 (427)
-.|.- +++.+.+..++.. +. +...++-.|+.+....++..+.+.. +......+..+ +.-.|+.+
T Consensus 465 ~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e 541 (963)
T 4ady_A 465 AMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQE 541 (963)
T ss_dssp STTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGG
T ss_pred hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChH
Confidence 33432 3445555544432 21 3333456677777777777666532 22333333333 34678888
Q ss_pred HHHHHHHHHhhCCCCCCHhhHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814 252 RVSELLHTMVARNRAPDNFTYE---EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328 (427)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 328 (427)
.+..+++.+.... .|.. -|. ++.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++
T Consensus 542 ~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 542 LADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888776642 2222 232 33445677888877777888877642 1233333334445555677666777776
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHH--HhcC-------CHHHHHHHHH
Q 045814 329 EMIHKGLLPNEYTYNSMIHGYCRIDNL-EEAKRLHKEMLDKGYGETTVTYNTLIAGL--CLHG-------RTDEAYHLFE 398 (427)
Q Consensus 329 ~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g-------~~~~A~~~~~ 398 (427)
.+.+.+ .|...--..+.-+....|.. .++..++..+... +|..+-...+.++ .-.| +....++.+.
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 665543 44544444444444445443 5777788888653 3443333333333 3333 2333334333
Q ss_pred HHHH-CCCCCCHhHHHHHHHHHHhcCC
Q 045814 399 EMAQ-KGIFRDVITYNTLIQGYCKEGK 424 (427)
Q Consensus 399 ~m~~-~g~~p~~~~~~~li~~~~~~g~ 424 (427)
.... +.-.++...-..+.++....|+
T Consensus 695 ~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 3332 2334556777777777777764
No 240
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.53 E-value=6.4 Score=36.27 Aligned_cols=57 Identities=12% Similarity=0.023 Sum_probs=25.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814 274 EVINGLCKSRKRLEAYRVFNDLKER--GYVPD---TVMYTTVIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 274 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m 330 (427)
.|...|...|++.+|.+++..+... |.... ...|...++.|...+++.+|..++.++
T Consensus 142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki 203 (445)
T 4b4t_P 142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI 203 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444455555555555555554322 11101 123344444455555555555555544
No 241
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.40 E-value=6.6 Score=36.16 Aligned_cols=95 Identities=7% Similarity=-0.038 Sum_probs=52.2
Q ss_pred HHHHHHHHccCChhHHHHHHHHHhhC--CCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC--hhh
Q 045814 238 NKLISRFCEKKNFGRVSELLHTMVAR--NRAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKE----RGYVPD--TVM 306 (427)
Q Consensus 238 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~ 306 (427)
..|...+...|++.+|.+++..+... +.... ...+...++.|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44556666667777777766665432 11111 23455556666777777777776666532 111122 224
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 307 YTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 307 ~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
|..++..+...+++.+|...|.++..
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555666666777766666665543
No 242
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.33 E-value=1.9 Score=30.04 Aligned_cols=48 Identities=13% Similarity=0.151 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
.-++.+-++.+......|++....+.+.+|-+.+++..|.++++-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334555555555555555555555555555555555555555555543
No 243
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=91.90 E-value=12 Score=37.92 Aligned_cols=154 Identities=7% Similarity=0.078 Sum_probs=81.9
Q ss_pred HHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHccCCH
Q 045814 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT---TVIHGLCKMGWL 320 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~ 320 (427)
+.-.|+-+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+.... .| ..-|. ++.-+|+..|+.
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCH
T ss_pred hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCH
Confidence 445566666666766655432 1112222222233446677777777777776531 11 12222 233456677777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHH
Q 045814 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT-DEAYHLFEE 399 (427)
Q Consensus 321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~ 399 (427)
....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+.--..+.-+....|.. .+|..++..
T Consensus 577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~ 654 (963)
T 4ady_A 577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP 654 (963)
T ss_dssp HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence 66666777776542 2233333333334444566666666666555542 34444444444455555553 567777777
Q ss_pred HHH
Q 045814 400 MAQ 402 (427)
Q Consensus 400 m~~ 402 (427)
+..
T Consensus 655 L~~ 657 (963)
T 4ady_A 655 LTK 657 (963)
T ss_dssp HHT
T ss_pred Hcc
Confidence 764
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.56 E-value=1.1 Score=32.97 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=51.6
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHH
Q 045814 283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD---ARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEE 357 (427)
Q Consensus 283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~ 357 (427)
.....+.+-|.+....|. ++..+--.+..++++...... ++.+++++.+.+ .| .....-.+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344455555665555443 455555556666776665544 777777777653 22 22334445557778888888
Q ss_pred HHHHHHHHHHC
Q 045814 358 AKRLHKEMLDK 368 (427)
Q Consensus 358 a~~~~~~m~~~ 368 (427)
|.+.++.+.+.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 88888888775
No 245
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.20 E-value=8.2 Score=40.46 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=40.4
Q ss_pred HHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPD----NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
|.-++..+.+.+.++.+.++-...++....-+ ...|..+.+++...|++++|...+-.+.....+ ......++.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence 45555566666666666655554443321111 124556666666666666666666555443222 223444444
Q ss_pred HHHccCC
Q 045814 313 GLCKMGW 319 (427)
Q Consensus 313 ~~~~~g~ 319 (427)
..|..|.
T Consensus 980 ~lce~~~ 986 (1139)
T 4fhn_B 980 QLTKQGK 986 (1139)
T ss_dssp HHHHHCC
T ss_pred HHHhCCC
Confidence 4444443
No 246
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.89 E-value=3.4 Score=30.46 Aligned_cols=62 Identities=19% Similarity=0.282 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814 320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA 382 (427)
Q Consensus 320 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 382 (427)
.-+..+-++.+...++.|++......+++|-+.+|+..|.++|+-++.+ +.+...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence 3344555555555555555555555556665555666666655555543 2223334444443
No 247
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.75 E-value=3.8 Score=30.26 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=36.2
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814 284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346 (427)
Q Consensus 284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li 346 (427)
|.-+..+-++.+....+.|++....+.+.+|-+.+++..|.++++-.+.+ +.+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 34455555666666666666666666666666666666666666665544 222333454444
No 248
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=89.64 E-value=0.74 Score=42.47 Aligned_cols=205 Identities=14% Similarity=0.175 Sum_probs=135.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChh
Q 045814 76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE 155 (427)
Q Consensus 76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 155 (427)
+.....+.+.++.-++++.-+++. ..++..=+.|+-+|++.+++.+..+++. .||..-...+..-|...|.++
T Consensus 89 Vi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYe 161 (624)
T 3lvg_A 89 VVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYD 161 (624)
T ss_dssp HHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCST
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHH
Confidence 334444556666666666555433 4455666788999999998777655543 466666667777777888888
Q ss_pred HHHHHHHHHHhcC--------------------CCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc----chhHHHHHh
Q 045814 156 EAFCAFSKLKEMG--------------------VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----GYLIQAFCN 211 (427)
Q Consensus 156 ~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~l~~~~~~ 211 (427)
.|.-+|..+.... -.-+..||-.+-.+|...+++..|.-.--.++-. .-++..|-.
T Consensus 162 AAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~ 241 (624)
T 3lvg_A 162 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD 241 (624)
T ss_dssp TSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSST
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHh
Confidence 8877776543211 1236789999999999999998877665555543 458889999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-------CHhhHHHHHHHHHhcCC
Q 045814 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-------DNFTYEEVINGLCKSRK 284 (427)
Q Consensus 212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~ll~~~~~~~~ 284 (427)
.|.+++-+.+++.-.... ......|+-|.-.|++- +.++..+.++..-.+--.| ....|..++-.|.+-.+
T Consensus 242 ~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE 319 (624)
T 3lvg_A 242 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 319 (624)
T ss_dssp TCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchh
Confidence 999999999998876421 23566788877777764 4555555444322211111 34567777777777777
Q ss_pred hHHHH
Q 045814 285 RLEAY 289 (427)
Q Consensus 285 ~~~a~ 289 (427)
++.|.
T Consensus 320 ~DnA~ 324 (624)
T 3lvg_A 320 YDNAI 324 (624)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=89.51 E-value=2 Score=42.30 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=76.7
Q ss_pred HHHHHHHHHccCC-hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHhC------CCCC-Chh--
Q 045814 237 FNKLISRFCEKKN-FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK-RLEAYRVFNDLKER------GYVP-DTV-- 305 (427)
Q Consensus 237 ~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~p-~~~-- 305 (427)
...++..+...++ .+.|.++++++.+.....+......++..+.+.++ --+|.+++.+..+. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 4455666655666 57788899988877432222222233333333332 22455555444321 1111 111
Q ss_pred --------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 306 --------MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 306 --------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
....-..-+...|+++.|+.+-++.... .|+ -.+|..|..+|...|+++.|+-.+..+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1112233456789999999999988876 455 5689999999999999999998888763
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=88.82 E-value=16 Score=38.24 Aligned_cols=116 Identities=10% Similarity=-0.008 Sum_probs=76.0
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCC--------------------
Q 045814 80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPN-------------------- 137 (427)
Q Consensus 80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~-------------------- 137 (427)
+...+..+.+.++..|.. .+...--.+..++...|++++|.+.|++. ++..+
T Consensus 822 l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 822 LFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 444566666777776653 34444445567788899999999999863 22110
Q ss_pred ---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH----hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045814 138 ---PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI----KTWNSALLGCIKIDRTDLVWKLYHDLIE 201 (427)
Q Consensus 138 ---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 201 (427)
..=|..++..+.+.+.++.+.++-....+....-+. ..|..+++.+...|++++|...+-.+..
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 122566777888888888888777666543222121 2577888888888998888877765544
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=87.26 E-value=14 Score=32.21 Aligned_cols=101 Identities=13% Similarity=0.107 Sum_probs=60.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHH----HHHHHhcCCCcCHhhHHHHHHHHHH
Q 045814 110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA----FSKLKEMGVFGSIKTWNSALLGCIK 185 (427)
Q Consensus 110 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~ 185 (427)
-++..-|.+++++++|.+++-+- ...+.+.|+...|-++ .+...+.++++|......++..+..
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 33455578888888888887542 2344455665544433 4556667788888877777777776
Q ss_pred cCChh-HHHHHHHHHHhcc---------------hhHHHHHhcCChhHHHHHH
Q 045814 186 IDRTD-LVWKLYHDLIESG---------------YLIQAFCNDGKVSEGYELL 222 (427)
Q Consensus 186 ~~~~~-~a~~~~~~~~~~~---------------~l~~~~~~~g~~~~a~~~~ 222 (427)
....+ .-..+.+++++|. .+...|.+.+++.+|...|
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 65422 3344555555541 2455555556665555544
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.62 E-value=6.5 Score=29.00 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=35.5
Q ss_pred CCChhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 301 VPDTVMYTTVIHGLCKMGW---LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 301 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
.|+..+--.+..++++..+ ..+++.+++++.+.+..-....+--+.-++.+.|++++|.++.+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444443334444444433 3456666666665542112333444455666677777777777666654
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.43 E-value=17 Score=31.40 Aligned_cols=167 Identities=13% Similarity=0.087 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 045814 175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE----LLRQVLEDGLVPENTAFNKLISRFCEKKNF 250 (427)
Q Consensus 175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~li~~~~~~~~~ 250 (427)
.|.++..-|.+.+++++|.+++..-. ..+.+.|+...|-+ +++-+.+.+..++......++..+.....-
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~ 108 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS 108 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence 44555566777788888887765432 23556677665555 455556678888888888888777664321
Q ss_pred h-HHHHHHHHHhh----CC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCH
Q 045814 251 G-RVSELLHTMVA----RN--RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM---GWL 320 (427)
Q Consensus 251 ~-~a~~~~~~m~~----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~ 320 (427)
+ .-.++++++++ .| ..-|......+...|.+.|++.+|+..|-.-. .-|...+..++.-+... |..
T Consensus 109 ~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 109 EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCc
Confidence 1 12334444432 22 12356677888888888888888887775211 11344555555544443 333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814 321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML 366 (427)
Q Consensus 321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 366 (427)
.++ +...-..+ -.|.-.|+...|..+++...
T Consensus 185 ~e~--------------dlf~~RaV-L~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STV--------------AEFFSRLV-FNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHH--------------HHHHHHHH-HHHHHTTBHHHHHHHHHHHH
T ss_pred chH--------------HHHHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence 222 11111222 23446678888888877654
No 254
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.27 E-value=10 Score=31.68 Aligned_cols=19 Identities=11% Similarity=0.239 Sum_probs=10.7
Q ss_pred HHHHHHcCChHHHHHHHHh
Q 045814 113 FDSLVEARAFKVAMDFLDS 131 (427)
Q Consensus 113 l~~~~~~~~~~~a~~~~~~ 131 (427)
+...++.|+++.+..+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~ 27 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEG 27 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 4444566666666655554
No 255
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.83 E-value=32 Score=33.13 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=64.6
Q ss_pred HHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045814 91 RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF 170 (427)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~ 170 (427)
++-..+....+.......=+.-+..+.+.+++......+.. . +.+...-+....+....|+..+|......+=..|-.
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~ 134 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS 134 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Confidence 33444433333333344445667788889999988886554 2 445666666778888889988887777766555533
Q ss_pred cCHhhHHHHHHHHHHcCChhH
Q 045814 171 GSIKTWNSALLGCIKIDRTDL 191 (427)
Q Consensus 171 p~~~~~~~ll~~~~~~~~~~~ 191 (427)
....+..++..+.+.|....
T Consensus 135 -~p~~c~~l~~~~~~~g~lt~ 154 (618)
T 1qsa_A 135 -QPNACDKLFSVWRASGKQDP 154 (618)
T ss_dssp -CCTHHHHHHHHHHHTTCSCH
T ss_pred -CcHHHHHHHHHHHHCCCCCH
Confidence 56677888888887776654
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.31 E-value=12 Score=27.94 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=36.4
Q ss_pred CChhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 302 PDTVMYTTVIHGLCKMGW---LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 302 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
|+..+--.+..++.+..+ ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 444444344445555443 3456666666666432212233334445666777777777777777664
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=82.45 E-value=36 Score=32.75 Aligned_cols=199 Identities=8% Similarity=-0.096 Sum_probs=105.3
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHH----HcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV----EARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEA 157 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A 157 (427)
..+++.|...+.+......+ +......+-..++ ..+...++...+.+ .....+.......+....+.|+++.|
T Consensus 227 r~d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 227 RQDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HHCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred hcCHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHH
Confidence 35788888888887654434 3333333333333 23424455555554 22234444444555556677999999
Q ss_pred HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHH--HHHhcCChhHHHHHHHHHHHCCCCC---
Q 045814 158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ--AFCNDGKVSEGYELLRQVLEDGLVP--- 232 (427)
Q Consensus 158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~--- 232 (427)
...|..|...... .....--+.+++...|+.++|..+|..+......-. +..+.|..-.. ......+
T Consensus 305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~-------~~~~~~~~~~ 376 (618)
T 1qsa_A 305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYEL-------KIDKAPQNVD 376 (618)
T ss_dssp HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCC-------CCCCCCSCCC
T ss_pred HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCC-------CCCCCChhHH
Confidence 9999888653222 333344566777888999999999888876421100 01111110000 0000000
Q ss_pred CH---HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 045814 233 EN---TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294 (427)
Q Consensus 233 ~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 294 (427)
.. ..--..+..+...|....|...+..+... . +......+.......|.++.+......
T Consensus 377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~ 438 (618)
T 1qsa_A 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIA 438 (618)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 00 01112344566778888888777776654 2 222233444445566666666554443
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.67 E-value=15 Score=33.57 Aligned_cols=99 Identities=8% Similarity=-0.116 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHH--
Q 045814 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNS-- 344 (427)
Q Consensus 270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~-- 344 (427)
.+...+.+.|.+.|++++|.+.|.++......+ -...+-..++.+...+++..+...++++...- -.++...-+.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 366677778888888888888888876542222 23456666777777777777777777765331 1112222221
Q ss_pred --HHHHHhhcCCHHHHHHHHHHHHHC
Q 045814 345 --MIHGYCRIDNLEEAKRLHKEMLDK 368 (427)
Q Consensus 345 --li~~~~~~g~~~~a~~~~~~m~~~ 368 (427)
-...+...+++..|.+.|-+....
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 122233456666666666655443
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.37 E-value=23 Score=29.77 Aligned_cols=115 Identities=10% Similarity=0.159 Sum_probs=63.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCCh
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~ 285 (427)
...+.|+++++++....-++..+. |...-..++..+|-.|+|+.|.+-++...+.... |....|..+|.+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a------- 77 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA------- 77 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence 345677777777777776666544 6777777777777788888777777766665321 122234444432
Q ss_pred HHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 045814 286 LEAYRVFNDLKERGYVPD-----TVMYTTVIHGLC--KMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 286 ~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~ 333 (427)
+..-.+...-+-.|. ..-...++.+.. ..|+.++|..+-.++.+.
T Consensus 78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 222333333222221 112233444333 347777777776666544
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.50 E-value=12 Score=34.29 Aligned_cols=111 Identities=9% Similarity=-0.050 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhh--H
Q 045814 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKER---GYVPDTVM--Y 307 (427)
Q Consensus 235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~--~ 307 (427)
.+...+...|.+.|+++.|.+.+.++..... ..-...+-.++..+...+++..+...+.++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3678899999999999999999999987532 333467788889999999999999999987532 32222221 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM 345 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 345 (427)
..-...+...+++..|...|-+....-...+...+..+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~ 249 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESI 249 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHH
Confidence 11222234568888888888776654323333334333
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.12 E-value=31 Score=29.85 Aligned_cols=65 Identities=6% Similarity=0.010 Sum_probs=41.3
Q ss_pred HHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHH----HHHHHHhcCCCcCHhhHHHHHHHHHHc
Q 045814 111 VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFC----AFSKLKEMGVFGSIKTWNSALLGCIKI 186 (427)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~ 186 (427)
++..-|.+++++++|.+++.+- ...+.+.|+...|-+ +.+...+.+.+++......++..+...
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3355577778888888876542 234445566555444 455556667888887777777776654
Q ss_pred C
Q 045814 187 D 187 (427)
Q Consensus 187 ~ 187 (427)
.
T Consensus 106 p 106 (312)
T 2wpv_A 106 D 106 (312)
T ss_dssp C
T ss_pred C
Confidence 3
No 262
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.10 E-value=36 Score=30.59 Aligned_cols=95 Identities=7% Similarity=-0.069 Sum_probs=48.4
Q ss_pred HhhHHHHHHHHHHcCChHHHHHHHHhc----CCCC---CHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCcCHhhH-
Q 045814 106 LVSCNVLFDSLVEARAFKVAMDFLDST----GFSP---NPNSLELYIQCLCESGL-IEEAFCAFSKLKEMGVFGSIKTW- 176 (427)
Q Consensus 106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~---~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~- 176 (427)
..+...|...|.+.|+.++..+++... +.-| .......++..+....+ .+.-.++..+..+..-. .-.+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 346677788888899999888888763 1112 23345566666655432 22222222222211000 11122
Q ss_pred -----HHHHHHHHHcCChhHHHHHHHHHHh
Q 045814 177 -----NSALLGCIKIDRTDLVWKLYHDLIE 201 (427)
Q Consensus 177 -----~~ll~~~~~~~~~~~a~~~~~~~~~ 201 (427)
..++..|...|++.+|.+++..+.+
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 1345555556666665555555544
No 263
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.53 E-value=5.4 Score=30.74 Aligned_cols=69 Identities=10% Similarity=0.010 Sum_probs=39.3
Q ss_pred CCCCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCcCH-------hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045814 133 GFSPNPN--SLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSI-------KTWNSALLGCIKIDRTDLVWKLYHDLIE 201 (427)
Q Consensus 133 ~~~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 201 (427)
|..|... ++-.-++.+...|.++.|+-+.+.+.... ..|+. .++..+.+++-..+++.+|...|++.++
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 4444433 34445777888888998888887765431 22331 2455566667777777777777666543
No 264
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=78.29 E-value=18 Score=26.68 Aligned_cols=47 Identities=9% Similarity=0.088 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814 356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 356 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
.++..+++++.+.+..-....+--|.-++.+.|++++|.+..+.+.+
T Consensus 60 ~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 60 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34455555544432111223333344445555555555555555544
No 265
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=78.17 E-value=22 Score=30.06 Aligned_cols=63 Identities=6% Similarity=-0.026 Sum_probs=27.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 045814 274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT 341 (427)
Q Consensus 274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 341 (427)
+.+...+..|+.+-+..+++.-...... |..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 163 t~L~~A~~~g~~~~v~~Ll~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 163 SCIHITIKNGHVDMMILLLDYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 3344445666666655555543322211 111122223333344553 33444555566665543
No 266
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=76.52 E-value=38 Score=29.55 Aligned_cols=167 Identities=11% Similarity=0.012 Sum_probs=96.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 045814 176 WNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL----LRQVLEDGLVPENTAFNKLISRFCEKKNFG 251 (427)
Q Consensus 176 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 251 (427)
|.++..-|.+.+++++|.+++..-. ..+.+.|+...|.++ ++-+.+.++.+|......++..+.....-+
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~ 111 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGE 111 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTC
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCC
Confidence 4445555677788888887764432 235556665555444 355566788888888888888877655422
Q ss_pred -HHHHHHHHHhh----CC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 045814 252 -RVSELLHTMVA----RN--RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR 324 (427)
Q Consensus 252 -~a~~~~~~m~~----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~ 324 (427)
.=.++++++++ .| ..-|......+...|.+.+++.+|+..|- .|-.+.+..|..++.-+...+...
T Consensus 112 p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--- 184 (336)
T 3lpz_A 112 PVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--- 184 (336)
T ss_dssp HHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG---
T ss_pred cHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc---
Confidence 11223333332 22 23355667778888899999988888773 233333456666655554444321
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814 325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 325 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 367 (427)
.++...-.+++ .|.-.+++..|..+++...+
T Consensus 185 -----------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -----------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -----------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred -----------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 11222223333 35566788888777666553
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.28 E-value=27 Score=27.85 Aligned_cols=55 Identities=15% Similarity=0.101 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 045814 318 GWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE 372 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 372 (427)
+...++..+|..|...|+--. ..-|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335577777777776655433 3345566666667777777777777777665444
No 268
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.44 E-value=24 Score=28.57 Aligned_cols=184 Identities=9% Similarity=0.045 Sum_probs=78.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh---hHHHHHHHH
Q 045814 206 IQAFCNDGKVSEGYELLRQVLEDGLVPEN---TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF---TYEEVINGL 279 (427)
Q Consensus 206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~ 279 (427)
+...+..|+.+.+..+++.+...|..++. .-.+ .+...+..|+.+ +++.+.+.|..++.. ..+ .+...
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t-~l~~A 86 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQT-PLHLAVITTLPS----VVRLLVTAGASPMALDRHGQT-AAHLA 86 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCC-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCC-HHHHHHHcCCHH----HHHHHHHcCCCccccCCCCCC-HHHHH
Confidence 34445566666666666655555543322 1222 233344556554 334444455443321 222 33344
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcC
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT---YNSMIHGYCRID 353 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g 353 (427)
+..|+.+-+..+++.....++.+ +..-.+. +...+..|+.+-+. .+.+.|..++... -...+...+..|
T Consensus 87 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~----~Ll~~g~~~~~~~~~~g~t~L~~A~~~~ 161 (241)
T 1k1a_A 87 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA-LHVAVNTECQETVQ----LLLERGADIDAVDIKSGRSPLIHAVENN 161 (241)
T ss_dssp HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCH-HHHHHHHTCHHHHH----HHHHTTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHcCCCccccccccCcCCCcH-HHHHHHcCCHHHHH----HHHHcCCCcccccccCCCcHHHHHHHcC
Confidence 55666666555555433211111 1122222 33333455554333 3444454433211 122333344566
Q ss_pred CHHHHHHHHHHHHHCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 354 NLEEAKRLHKEMLDKGYGETTVT--YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 354 ~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
+.+-+.. +.+.|..++... -.+.+...+..|+.+ +.+.+.+.|..|+
T Consensus 162 ~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~ 210 (241)
T 1k1a_A 162 SLSMVQL----LLQHGANVNAQMYSGSSALHSASGRGLLP----LVRTLVRSGADSS 210 (241)
T ss_dssp CHHHHHH----HHHTTCCTTCBCTTSCBHHHHHHHHTCHH----HHHHHHHTTCCTT
T ss_pred CHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCCHH----HHHHHHhcCCCCC
Confidence 6554443 344454443221 112233334556654 3334444555544
No 269
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.90 E-value=27 Score=28.41 Aligned_cols=70 Identities=16% Similarity=0.127 Sum_probs=42.5
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc
Q 045814 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS-PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171 (427)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p 171 (427)
++-|..-...-|...-.+.+.......+...++- --+.-|......+...|++.+|.++|+.-.+.+-.|
T Consensus 113 YknD~RyLklWl~Ya~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 113 YKDDVRYLRIWMQYVNYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp GTTCHHHHHHHHHHHTTCSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred ccCCHHHHHHHHHHHHccCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3444443333333333345555555555554443 335567777778888888888888888888776666
No 270
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.83 E-value=45 Score=29.49 Aligned_cols=64 Identities=14% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR--TDEAYHLFEEMAQKGIF 406 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~ 406 (427)
.+.++.-|...|+.++|.+.++++..-.+. ...+...+..++-+.++ .+.+.+++..+...|+-
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~gll 285 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 285 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCC
Confidence 456666677777777777777776432111 12233333344443332 23455666666655543
No 271
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=74.51 E-value=26 Score=26.57 Aligned_cols=71 Identities=10% Similarity=0.032 Sum_probs=39.9
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC
Q 045814 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS-PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS 172 (427)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~ 172 (427)
++-|+.-...-+...-...++.+....+...++- --+.-|......+...|++++|.++|+.-.+.+-.|-
T Consensus 64 YknD~RyLklWl~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccCCHHHHHHHHHHHHhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 3444444333333333344444444444443332 2345566677777777888888888877777766653
No 272
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=74.34 E-value=46 Score=29.41 Aligned_cols=69 Identities=10% Similarity=0.120 Sum_probs=43.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHH
Q 045814 271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW--LGDARKMWFEMIHKGLLPNEY 340 (427)
Q Consensus 271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 340 (427)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+....++..+...|+-+...
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q 289 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 289 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHH
Confidence 3567788888888888888888888642222 23344555555555433 355777777777776654433
No 273
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=73.27 E-value=20 Score=24.83 Aligned_cols=79 Identities=10% Similarity=-0.063 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 397 (427)
..-++|..+-+-+...+. ....--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|-.+++..-+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 91 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRL 91 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666655542 11111122334556677777766555432 566666665544 4666666666666
Q ss_pred HHHHHCC
Q 045814 398 EEMAQKG 404 (427)
Q Consensus 398 ~~m~~~g 404 (427)
.++..+|
T Consensus 92 ~~la~sg 98 (115)
T 2uwj_G 92 AGLGGSS 98 (115)
T ss_dssp HHHHTCS
T ss_pred HHHHhCC
Confidence 6666554
No 274
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=73.01 E-value=21 Score=24.82 Aligned_cols=79 Identities=10% Similarity=-0.010 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814 318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 397 (427)
..-++|..+-+-+...+. ....--+-+..+...|++++|..+.+.+. .||...|-+|-. .+.|-.+++..-+
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL 92 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRL 92 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHH
Confidence 345666666666655543 11111122334556677777776655443 566666665544 3666666666666
Q ss_pred HHHHHCC
Q 045814 398 EEMAQKG 404 (427)
Q Consensus 398 ~~m~~~g 404 (427)
.++..+|
T Consensus 93 ~~la~sg 99 (116)
T 2p58_C 93 NRLARSQ 99 (116)
T ss_dssp HHHTTCC
T ss_pred HHHHhCC
Confidence 6665554
No 275
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=71.31 E-value=31 Score=27.69 Aligned_cols=15 Identities=13% Similarity=0.071 Sum_probs=6.9
Q ss_pred hhcCCHHHHHHHHHH
Q 045814 350 CRIDNLEEAKRLHKE 364 (427)
Q Consensus 350 ~~~g~~~~a~~~~~~ 364 (427)
.+.|+.+-+..+++.
T Consensus 218 ~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 218 KQRKNVWMINHLQEA 232 (240)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHh
Confidence 344555444444443
No 276
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=70.59 E-value=17 Score=30.27 Aligned_cols=241 Identities=11% Similarity=0.022 Sum_probs=110.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh---hHHHHHHHHHHcCChhHHHHHHHHHHhc-------chhHHHHHhc
Q 045814 143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK---TWNSALLGCIKIDRTDLVWKLYHDLIES-------GYLIQAFCND 212 (427)
Q Consensus 143 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~l~~~~~~~ 212 (427)
+.+...++.|+.+....++ +.|..++.. .-.+.+...+..|+.+-+..+++.-... ...+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL----EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH----HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH----HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 4455566778876555544 445444322 1123455556677766555444321110 1244455556
Q ss_pred CChhHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhh------------HHHHHH
Q 045814 213 GKVSEGYELLRQVLEDGLVPEN---TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT------------YEEVIN 277 (427)
Q Consensus 213 g~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~------------~~~ll~ 277 (427)
|+.+- ++.+.+.|..++. ..++. +...+..|+.+ +++.+.+.|..++... -...+.
T Consensus 83 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~ 153 (285)
T 1wdy_A 83 GSVKL----LKLFLSKGADVNECDFYGFTA-FMEAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 153 (285)
T ss_dssp TCHHH----HHHHHHTTCCTTCBCTTCCBH-HHHHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHH
T ss_pred CCHHH----HHHHHHcCCCCCccCcccCCH-HHHHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHH
Confidence 66543 3444455554432 22233 33345556654 3444445554443210 112334
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhhc
Q 045814 278 GLCKSRKRLEAYRVFNDLKERGYVPD---TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT--YNSMIHGYCRI 352 (427)
Q Consensus 278 ~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~ 352 (427)
..+..|+.+-+..+++. .|..++ ..-.+.+..+ +..++......+.+.+.+.|..++... -.+.+...+..
T Consensus 154 ~A~~~~~~~~v~~Ll~~---~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 229 (285)
T 1wdy_A 154 DAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229 (285)
T ss_dssp HHHHHTCHHHHHHHHHT---SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHh---cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc
Confidence 44556666554444432 133332 2223333333 345555555667777777776555321 12233444566
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 353 DNLEEAKRLHKEMLDKGYGETT---VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 353 g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
|+.+-+..+++. .|..++. ...+. +...++.|+.+ +.+-+.+.|..|+
T Consensus 230 ~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~~~----i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 230 KHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLKK----IAELLCKRGASTD 280 (285)
T ss_dssp TCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHHHSSCSC
T ss_pred CCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCcHH----HHHHHHHcCCCCC
Confidence 776554444431 3433332 22222 33334555543 4444455566555
No 277
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=69.20 E-value=37 Score=26.14 Aligned_cols=23 Identities=9% Similarity=-0.127 Sum_probs=11.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHH
Q 045814 308 TTVIHGLCKMGWLGDARKMWFEM 330 (427)
Q Consensus 308 ~~li~~~~~~g~~~~a~~~~~~m 330 (427)
..+.+++...|++..|...|++.
T Consensus 67 ~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 67 VYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 33444444455555555555443
No 278
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=68.93 E-value=34 Score=25.59 Aligned_cols=68 Identities=10% Similarity=-0.046 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHHHccCC---hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 231 VPENTAFNKLISRFCEKKN---FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 231 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
.|+..+--.+..++.+..+ ..+++.+++.....+..-.....-.+.-++.+.|++++|.+..+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3444444444445555444 3345556665555432211222333444555666666666666666554
No 279
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=68.02 E-value=28 Score=26.79 Aligned_cols=72 Identities=8% Similarity=-0.076 Sum_probs=44.5
Q ss_pred CCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH
Q 045814 102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFS-PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI 173 (427)
Q Consensus 102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 173 (427)
++-|..-...-|...-.++++.+....+...++- --+..|......+...|++.+|.++|+.-.+.+-.|-.
T Consensus 59 YknD~RyLklWl~ya~~~~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCNEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLE 131 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCSCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred hccCHHHHHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 4445444444444333445666555555554443 23556777777777888888888888888877766644
No 280
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.94 E-value=69 Score=28.77 Aligned_cols=233 Identities=9% Similarity=-0.013 Sum_probs=127.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHhc-------------chhHHHHHhc-CChhHHHHHHHHHHHCCCCCCHHHH--
Q 045814 174 KTWNSALLGCIKIDRTDLVWKLYHDLIES-------------GYLIQAFCND-GKVSEGYELLRQVLEDGLVPENTAF-- 237 (427)
Q Consensus 174 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------------~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~-- 237 (427)
.....|...|.+.|+.++..+++...... ..++..+... +..+.-.++..+..+..-. +..+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 35567888999999999999888876554 1255555543 3344444444444431110 11123
Q ss_pred ----HHHHHHHHccCChhHHHHHHHHHhhCCCCCC-----HhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhh
Q 045814 238 ----NKLISRFCEKKNFGRVSELLHTMVARNRAPD-----NFTYEEVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVM 306 (427)
Q Consensus 238 ----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~ 306 (427)
..++..|...|++.+|.+++..+.+.--..| ..+|..-+..|...+++.++...+...... .+.+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2577888889999999888888776422212 134556677788888999988888877543 22233332
Q ss_pred HHHH----HHHHH-ccCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHhhcCCHHHHHHHHH-HHHHCCCCCChh
Q 045814 307 YTTV----IHGLC-KMGWLGDARKMWFEMIHKGLLPNEYTYN-----SMIHGYCRIDNLEEAKRLHK-EMLDKGYGETTV 375 (427)
Q Consensus 307 ~~~l----i~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~ 375 (427)
...+ ...+. ..+++..|...|-+..+.=.......+. .++.+.. .++..+...++. .....-..|+..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH-cCCHHHHHHHhccccccccCCccHH
Confidence 2221 22344 6788888888777664320011111111 1111111 223222222222 211111345555
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 045814 376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI 410 (427)
Q Consensus 376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 410 (427)
.+..++.+| ..+++.+..++++.... .+..|..
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~ 290 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVI 290 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChH
Confidence 566666664 55678777777766543 2444554
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=66.55 E-value=24 Score=28.41 Aligned_cols=54 Identities=15% Similarity=-0.008 Sum_probs=25.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY--NTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+...+..|+.+-+..+++ .|..++.... .+.+...++.|+.+-+.-+++...+.
T Consensus 181 L~~A~~~~~~~~v~~Ll~----~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLE----AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHHHTCHHHHHHHHH----HTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHHHcCCHHHHHHHHH----cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 444456677665444443 3444442211 12344446667776665555554443
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=65.61 E-value=34 Score=26.65 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=11.5
Q ss_pred HHHHcCChHHHHHHHHhcC
Q 045814 115 SLVEARAFKVAMDFLDSTG 133 (427)
Q Consensus 115 ~~~~~~~~~~a~~~~~~~~ 133 (427)
..+..|+.+.+..++...+
T Consensus 11 ~A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTT
T ss_pred HHHHhccHHHHHHHHHcCC
Confidence 3455667777777766543
No 283
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=65.07 E-value=32 Score=23.88 Aligned_cols=86 Identities=13% Similarity=0.109 Sum_probs=60.2
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHH-HHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCN-VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 161 (427)
....+.|.-+-+|+..+ ++..+.+ .-+..+...|++++|..+.+... .||...|-.|-.. +.|..+++..-+
T Consensus 19 ~H~HqEA~tIAdwL~~~----~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL 91 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERL----GQDEAARLIRISSLANQGRYQEALAFAHGNP-WPALEPWFALCEW--HLGLGAALDRRL 91 (115)
T ss_dssp TTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-CGGGHHHHHHHHH--HTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 35567888888998654 3322222 22456778999999999888765 7888888766544 788888888888
Q ss_pred HHHHhcCCCcCHhhH
Q 045814 162 SKLKEMGVFGSIKTW 176 (427)
Q Consensus 162 ~~m~~~g~~p~~~~~ 176 (427)
.++...|-+ ....|
T Consensus 92 ~~la~sg~p-~~q~F 105 (115)
T 2uwj_G 92 AGLGGSSDP-ALADF 105 (115)
T ss_dssp HHHHTCSSH-HHHHH
T ss_pred HHHHhCCCH-HHHHH
Confidence 888776533 44444
No 284
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=64.86 E-value=16 Score=24.03 Aligned_cols=60 Identities=13% Similarity=0.133 Sum_probs=35.5
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 365 MLDKGYGETTVTYNTLIAGLCLHG-RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|..-.+..+.+.|-+
T Consensus 8 l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 8 LKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 445566555433 33444444443 4455667777776666666667777777777776654
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=64.78 E-value=27 Score=29.49 Aligned_cols=179 Identities=10% Similarity=-0.000 Sum_probs=77.7
Q ss_pred HHHHHHcCChhHHHHHHHHHHhc-----chhHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChh
Q 045814 180 LLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPE---NTAFNKLISRFCEKKNFG 251 (427)
Q Consensus 180 l~~~~~~~~~~~a~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~ 251 (427)
+...+..|+.+.+..+++.-... ...+...+..|+.+-+. .+.+.|..++ ....+. +...+..|+.+
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~d~~g~t~-L~~A~~~g~~~ 109 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVK----ILLFSGLDDSQFDDKGNTA-LYYAVDSGNMQ 109 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHH----HHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHH----HHHHCCCCCCCcCCCCCcH-HHHHHHcCCHH
Confidence 44455667776665555432111 12444445556654443 3334454433 222233 33334556654
Q ss_pred HHHHHHHHHhhCCCCCCHh---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHH
Q 045814 252 RVSELLHTMVARNRAPDNF---TYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMW 327 (427)
Q Consensus 252 ~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 327 (427)
-+..+++ .|..++.. .+.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|+.+-+..++
T Consensus 110 ~v~~Ll~----~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 181 (285)
T 3kea_A 110 TVKLFVK----KNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181 (285)
T ss_dssp HHHHHHH----HCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHh----cCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHH
Confidence 4433333 34333322 212344444555665433 3333444332 2112234444555667766655555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhh
Q 045814 328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376 (427)
Q Consensus 328 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 376 (427)
+.-...... |..-.+..+...+..|+. ++.+.+.+.|..++...
T Consensus 182 ~~gad~n~~-~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 182 DYMTSTNTN-NSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp HHHHHTCTT-CCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred HcCCCCCcc-cCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 543332211 111122222333344543 34455556666666554
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=64.29 E-value=33 Score=23.82 Aligned_cols=86 Identities=14% Similarity=0.149 Sum_probs=60.1
Q ss_pred cCChHHHHHHHHHHhhcCCCCCCHhhHH-HHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814 83 QNNVLLSIRFFQWLHSHYGFSPDLVSCN-VLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161 (427)
Q Consensus 83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 161 (427)
....+.|.-+-+|+..+ ++..+.+ .-+..+...|++++|..+.+... .||...|-.|-.. +.|..+++..-+
T Consensus 20 ~H~HqEA~tIAdwL~~~----~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-~pdlepw~ALce~--rlGl~s~le~rL 92 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLK----GEEEAVQLIRLSSLMNRGDYASALQQGNKLA-YPDLEPWLALCEY--RLGLGSALESRL 92 (116)
T ss_dssp TTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhC----CcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-CchHHHHHHHHHH--hcccHHHHHHHH
Confidence 35568888889998654 3322222 22456778999999999988876 7888888776554 678888888888
Q ss_pred HHHHhcCCCcCHhhH
Q 045814 162 SKLKEMGVFGSIKTW 176 (427)
Q Consensus 162 ~~m~~~g~~p~~~~~ 176 (427)
.++...|-+ ....|
T Consensus 93 ~~la~sg~p-~~q~F 106 (116)
T 2p58_C 93 NRLARSQDP-RIQTF 106 (116)
T ss_dssp HHHTTCCCH-HHHHH
T ss_pred HHHHhCCCH-HHHHH
Confidence 788776533 33444
No 287
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=62.61 E-value=12 Score=31.09 Aligned_cols=27 Identities=11% Similarity=-0.182 Sum_probs=15.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCcC
Q 045814 146 QCLCESGLIEEAFCAFSKLKEMGVFGS 172 (427)
Q Consensus 146 ~~~~~~~~~~~A~~~~~~m~~~g~~p~ 172 (427)
...++.|+.+....+++.+.+.|..++
T Consensus 10 ~~A~~~g~~~~v~~ll~~l~~~~~~~~ 36 (260)
T 3jxi_A 10 FDIVSRGSPDGLEGLLSFLLTHKKRLT 36 (260)
T ss_dssp HHHHHHTCGGGGTTHHHHHHHHTCCTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCcc
Confidence 334456677766666666666555444
No 288
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=62.57 E-value=25 Score=26.48 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=39.9
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 363 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 16 ~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 16 MSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 3455566664432 2344555556666777888888887777777777777777888777754
No 289
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=61.15 E-value=86 Score=28.17 Aligned_cols=284 Identities=15% Similarity=0.126 Sum_probs=134.6
Q ss_pred HHHHHHhhcCCCCCCHh--hHHHHHHHHHHcCChHHHHHHHHhc-CCC-CCHHhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 045814 91 RFFQWLHSHYGFSPDLV--SCNVLFDSLVEARAFKVAMDFLDST-GFS-PNPNSLELYIQCLCESGLIEEAFCAFSKLKE 166 (427)
Q Consensus 91 ~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 166 (427)
++++++.+. |..++.. .....+...++.|+.+-+.-+++.- .+. .+..-. +.+...+..|+.+-+.- +.+
T Consensus 28 ~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~----Ll~ 101 (437)
T 1n11_A 28 PIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKL----LLE 101 (437)
T ss_dssp HHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHH----HHH
T ss_pred HHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHH----HHh
Confidence 345555433 4444422 2234456667888888888777752 211 122222 33444556677654443 444
Q ss_pred cCCCcCHhh--HHHHHHHHHHcCChhHHHHHHHHHHhc-------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--
Q 045814 167 MGVFGSIKT--WNSALLGCIKIDRTDLVWKLYHDLIES-------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENT-- 235 (427)
Q Consensus 167 ~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 235 (427)
.|..++... -.+.+...+..|+.+.+..+++.-... ...+...+..|+.+-+ +.+.+.|..++..
T Consensus 102 ~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~g~~~~~~~~ 177 (437)
T 1n11_A 102 NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA----ELLLERDAHPNAAGK 177 (437)
T ss_dssp HTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCCS
T ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCCCCCCC
Confidence 454443221 122344556677777666665532211 1245556667776544 3444455544321
Q ss_pred -HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh---hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHH
Q 045814 236 -AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF---TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT---VMYT 308 (427)
Q Consensus 236 -~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~ 308 (427)
..+ .+...+..|+.+ +++.+.+.|..++.. .++. +...+..|+.+-+..+ .+.|..++. .-.+
T Consensus 178 ~g~t-~L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~L----l~~g~~~~~~~~~g~t 247 (437)
T 1n11_A 178 NGLT-PLHVAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSL----LQYGGSANAESVQGVT 247 (437)
T ss_dssp SCCC-HHHHHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHH----HHTTCCTTCCCTTCCC
T ss_pred CCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHH----HHcCCCCCCCCCCCCC
Confidence 122 233445566654 445555566544332 2333 3444566776544444 445543332 2223
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHH
Q 045814 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT---VTYNTLIA 382 (427)
Q Consensus 309 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~ 382 (427)
.+...+..|+.+-+..+ .+.|..++. .-.+. +...+..|+.+-+..++ +.|..++. ...+.| .
T Consensus 248 -~L~~A~~~g~~~~v~~L----l~~~~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll----~~g~~~~~~~~~g~t~L-~ 316 (437)
T 1n11_A 248 -PLHLAAQEGHAEMVALL----LSKQANGNLGNKSGLTP-LHLVAQEGHVPVADVLI----KHGVMVDATTRMGYTPL-H 316 (437)
T ss_dssp -HHHHHHHTTCHHHHHHH----HTTTCCTTCCCTTCCCH-HHHHHHHTCHHHHHHHH----HHTCCTTCCCSSCCCHH-H
T ss_pred -HHHHHHHCCCHHHHHHH----HhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----hCCccCCCCCCCCCCHH-H
Confidence 33444556776544433 344443332 12222 33344667766544444 33443332 222333 3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045814 383 GLCLHGRTDEAYHLFEEMAQKGIFRDV 409 (427)
Q Consensus 383 ~~~~~g~~~~A~~~~~~m~~~g~~p~~ 409 (427)
..+..|+.+ +.+.+.+.|..++.
T Consensus 317 ~A~~~g~~~----~v~~Ll~~gad~n~ 339 (437)
T 1n11_A 317 VASHYGNIK----LVKFLLQHQADVNA 339 (437)
T ss_dssp HHHHSSCSH----HHHHHHHTTCCTTC
T ss_pred HHHHcCcHH----HHHHHHhcCCCCCC
Confidence 345667765 44445566766654
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=60.45 E-value=7.4 Score=32.36 Aligned_cols=185 Identities=9% Similarity=-0.082 Sum_probs=86.1
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHH--ccCChhHHHHHHHHHhhCC---------C-CCC
Q 045814 208 AFCNDGKVSEGYELLRQVLEDGLVPENT-------AFNKLISRFC--EKKNFGRVSELLHTMVARN---------R-APD 268 (427)
Q Consensus 208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~--~~~~~~~a~~~~~~m~~~~---------~-~~~ 268 (427)
..++.|+.+....+++.+...|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ . ..|
T Consensus 11 ~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 11 DIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 3445666666666666666655544422 2233433332 5577666666665543211 1 111
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh----------------HHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM----------------YTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
..-.+.| ...+..|+.+-+.. +.+.|..++... -.+.+...+..|+.+-+.. +.+
T Consensus 91 ~~g~t~L-~~A~~~g~~~~v~~----Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~----Ll~ 161 (260)
T 3jxi_A 91 YRGQTAL-HIAIERRCKHYVEL----LVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY----LTE 161 (260)
T ss_dssp EESBCHH-HHHHHTTCHHHHHH----HHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH----HHH
T ss_pred cCCCCHH-HHHHHcCCHHHHHH----HHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH----HHh
Confidence 1223333 33455677654444 344555544332 2233444455677554444 444
Q ss_pred ---cCCCCCH---HHHHHHHHHHhhcCC-----HHHHHHHHHHHHHCCCCC----------ChhhHHHHHHHHHhcCCHH
Q 045814 333 ---KGLLPNE---YTYNSMIHGYCRIDN-----LEEAKRLHKEMLDKGYGE----------TTVTYNTLIAGLCLHGRTD 391 (427)
Q Consensus 333 ---~~~~p~~---~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~ 391 (427)
.|..++. .-.+.|..++ ..|+ .+...++++.+.+.|..+ |..-.+. +...++.|+.+
T Consensus 162 ~~~~ga~~~~~d~~g~TpLh~A~-~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tp-L~~A~~~g~~~ 239 (260)
T 3jxi_A 162 NGHKQADLRRQDSRGNTVLHALV-AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP-LMMAAKTGKIG 239 (260)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHH-HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCH-HHHHHHTTCHH
T ss_pred ccccCCCCcccCCCCCcHHHHHH-HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCH-HHHHHHcCCHH
Confidence 4444332 2233343333 2232 222234455554443222 2233333 33446778887
Q ss_pred HHHHHHHHHHHC
Q 045814 392 EAYHLFEEMAQK 403 (427)
Q Consensus 392 ~A~~~~~~m~~~ 403 (427)
-+..++++-...
T Consensus 240 ~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 240 IFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc
Confidence 777777665543
No 291
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=59.78 E-value=1.1e+02 Score=28.17 Aligned_cols=93 Identities=13% Similarity=0.175 Sum_probs=66.6
Q ss_pred ChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh--cCCCCCHHhHHHHHHHHH
Q 045814 72 DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS--TGFSPNPNSLELYIQCLC 149 (427)
Q Consensus 72 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~li~~~~ 149 (427)
+..++.-+.....+++.|+++- .+.|++--...|..-.+.+...|++++|.++-.. .|+-.+..|.+.+-..=.
T Consensus 331 e~~ivpyi~~~l~n~~lA~~lA----~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~giLRt~~Ti~rFk~vp~ 406 (494)
T 1bpo_A 331 EENIIPYITNVLQNPDLALRMA----VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKGILRTPDTIRRFQSVPA 406 (494)
T ss_dssp TTTHHHHHHHTTCCHHHHHHHH----HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGGSSCSHHHHHHHTTSCC
T ss_pred cccchhhhhhccCCHHHHHHHH----HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccccccCHHHHHHHhcCCC
Confidence 4456666677778888887665 4447776777888888999999999999998765 355667777665555444
Q ss_pred hcCChhHHHHHHHHHHhcC
Q 045814 150 ESGLIEEAFCAFSKLKEMG 168 (427)
Q Consensus 150 ~~~~~~~A~~~~~~m~~~g 168 (427)
.-|...--+.+|..+.+.|
T Consensus 407 ~pgq~splL~YF~~Ll~~g 425 (494)
T 1bpo_A 407 QPGQTSPLLQYFGILLDQG 425 (494)
T ss_dssp CTTSCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 5566666777777777665
No 292
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=59.50 E-value=26 Score=26.25 Aligned_cols=61 Identities=13% Similarity=0.103 Sum_probs=38.1
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 345566665543 2234444445556666777777777776666777777777777777754
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=58.15 E-value=58 Score=24.62 Aligned_cols=51 Identities=14% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814 358 AKRLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408 (427)
Q Consensus 358 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 408 (427)
+.++|..|..+|+.-. ...|......+...|++++|.++|+.-.+.+-.|-
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~ 135 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPR 135 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 6677777776655433 44566666666677777777777777777666653
No 294
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=57.74 E-value=78 Score=25.98 Aligned_cols=90 Identities=11% Similarity=-0.012 Sum_probs=48.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC--CCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045814 275 VINGLCKSRKRLEAYRVFNDLKER--GYVP----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348 (427)
Q Consensus 275 ll~~~~~~~~~~~a~~~~~~m~~~--~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 348 (427)
-++.+....++++|..++++..+. +.++ +.......+..-.....-.-+..+.+++ .. .++.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 467777778888888877776432 1221 1112222233333333333444444444 22 3345555666677
Q ss_pred HhhcCCHHHHHHHHHHHHH
Q 045814 349 YCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~ 367 (427)
+.+.|+-++|.++|=+...
T Consensus 101 L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHH
Confidence 7777777777777766553
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.75 E-value=30 Score=26.97 Aligned_cols=15 Identities=13% Similarity=0.428 Sum_probs=8.7
Q ss_pred HHHHHHHHHCCCCCC
Q 045814 359 KRLHKEMLDKGYGET 373 (427)
Q Consensus 359 ~~~~~~m~~~~~~p~ 373 (427)
.++.+.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 455566666665554
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=55.29 E-value=25 Score=25.91 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=35.8
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 365 MLDKGYGETTVTYNTLIAGLCLHG-RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445566544332 23444444444 5566777777777776666777777777777776654
No 297
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=55.02 E-value=1.2e+02 Score=27.23 Aligned_cols=262 Identities=11% Similarity=0.122 Sum_probs=129.4
Q ss_pred HHHHHHHcCChHHHHHHHHhcCCCCC---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC---HhhHHHHHHHHHH
Q 045814 112 LFDSLVEARAFKVAMDFLDSTGFSPN---PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS---IKTWNSALLGCIK 185 (427)
Q Consensus 112 ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~ 185 (427)
.+...++.|+.+-+.-+++. |..++ ..-.+ .+...+..|+.+-+..+++ .+..++ ..-+ +.+...+.
T Consensus 83 ~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~t-~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~g~-t~L~~A~~ 155 (437)
T 1n11_A 83 PLHCAARIGHTNMVKLLLEN-NANPNLATTAGHT-PLHIAAREGHVETVLALLE----KEASQACMTKKGF-TPLHVAAK 155 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHHH----TTCCSCCCCTTSC-CHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhC-CCCCCCCCCCCCc-HHHHHHHcCCHHHHHHHHh----CCCCCcCCCCCCC-CHHHHHHH
Confidence 45556788888877777765 33332 22222 3444556777766655554 333222 1122 23445567
Q ss_pred cCChhHHHHHHHHHHhc-------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCChhHHHH
Q 045814 186 IDRTDLVWKLYHDLIES-------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENT---AFNKLISRFCEKKNFGRVSE 255 (427)
Q Consensus 186 ~~~~~~a~~~~~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~ 255 (427)
.|+.+-+..+++.-... ...+...+..|+.+- ++.+.+.|..++.. .++ .+...+..|+.+-+.
T Consensus 156 ~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~- 229 (437)
T 1n11_A 156 YGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDI----VKLLLPRGGSPHSPAWNGYT-PLHIAAKQNQVEVAR- 229 (437)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHH----HHHHGGGTCCSCCCCTTCCC-HHHHHHHTTCHHHHH-
T ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCCCCcCCCCCC-HHHHHHHcCCHHHHH-
Confidence 77776555554432111 124555566676654 44445555544322 223 344455667765444
Q ss_pred HHHHHhhCCCCCCH---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCCHHHHHHHHHH
Q 045814 256 LLHTMVARNRAPDN---FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT---VMYTTVIHGLCKMGWLGDARKMWFE 329 (427)
Q Consensus 256 ~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~ 329 (427)
.+.+.|..++. ...+.+ ...+..|..+-+. .+.+.|..++. .-.+ .+...++.|+.+-+..++
T Consensus 230 ---~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~----~Ll~~~~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll-- 298 (437)
T 1n11_A 230 ---SLLQYGGSANAESVQGVTPL-HLAAQEGHAEMVA----LLLSKQANGNLGNKSGLT-PLHLVAQEGHVPVADVLI-- 298 (437)
T ss_dssp ---HHHHTTCCTTCCCTTCCCHH-HHHHHTTCHHHHH----HHHTTTCCTTCCCTTCCC-HHHHHHHHTCHHHHHHHH--
T ss_pred ---HHHHcCCCCCCCCCCCCCHH-HHHHHCCCHHHHH----HHHhcCCCCCCCCCCCCC-HHHHHHHcCCHHHHHHHH--
Confidence 44455544332 223333 3445667765444 44445544432 2233 344445667766544444
Q ss_pred HHHcCCCCCHH---HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 330 MIHKGLLPNEY---TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV---TYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 330 m~~~~~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
+.|..++.. -.+. +...+..|+.+-+. .+.+.|..++.. -++.|.. .+..|..+ +.+.+.+.
T Consensus 299 --~~g~~~~~~~~~g~t~-L~~A~~~g~~~~v~----~Ll~~gad~n~~~~~g~t~L~~-A~~~g~~~----iv~~Ll~~ 366 (437)
T 1n11_A 299 --KHGVMVDATTRMGYTP-LHVASHYGNIKLVK----FLLQHQADVNAKTKLGYSPLHQ-AAQQGHTD----IVTLLLKN 366 (437)
T ss_dssp --HHTCCTTCCCSSCCCH-HHHHHHSSCSHHHH----HHHHTTCCTTCCCTTSCCHHHH-HHHTTCHH----HHHHHHHT
T ss_pred --hCCccCCCCCCCCCCH-HHHHHHcCcHHHHH----HHHhcCCCCCCCCCCCCCHHHH-HHHCChHH----HHHHHHHC
Confidence 445443321 2223 33345667765444 444556555432 2333333 34566654 45555667
Q ss_pred CCCCCH
Q 045814 404 GIFRDV 409 (427)
Q Consensus 404 g~~p~~ 409 (427)
|..|+.
T Consensus 367 ga~~~~ 372 (437)
T 1n11_A 367 GASPNE 372 (437)
T ss_dssp TCCSCC
T ss_pred cCCCCC
Confidence 877765
No 298
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=54.76 E-value=80 Score=25.18 Aligned_cols=53 Identities=21% Similarity=0.168 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 045814 250 FGRVSELLHTMVARNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP 302 (427)
Q Consensus 250 ~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p 302 (427)
..++.++|..|...|+-. -...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445666666666555422 23345555555555666666666666655554444
No 299
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=53.74 E-value=99 Score=25.97 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=8.4
Q ss_pred cCChhHHHHHHHHHhh
Q 045814 247 KKNFGRVSELLHTMVA 262 (427)
Q Consensus 247 ~~~~~~a~~~~~~m~~ 262 (427)
.|+.++|.++-.++.+
T Consensus 113 ~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 113 SQDYEQVSELALQIEE 128 (273)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 3555555555555443
No 300
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=53.20 E-value=1.1e+02 Score=26.25 Aligned_cols=148 Identities=12% Similarity=0.077 Sum_probs=68.8
Q ss_pred HHHccCChhHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHcc
Q 045814 243 RFCEKKNFGRVSELLHTMVARNRAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM--YTTVIHGLCKM 317 (427)
Q Consensus 243 ~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~ 317 (427)
..+..|+.+-+..++++ .|..++ ....+.+..+... +.......+.+.+.+.|..++... -.+.+...+..
T Consensus 174 ~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~-~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~ 249 (337)
T 4g8k_A 174 DAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLS-SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 249 (337)
T ss_dssp HHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHH-SCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHH-cCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh
Confidence 34556776544444432 343332 2222333333222 222233344455566666554321 12234445567
Q ss_pred CCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045814 318 GWLGDARKMWFEMIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY 394 (427)
Q Consensus 318 g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 394 (427)
|..+.+..++.. .|..++ ..-.+.|.. -++.|+.+ +.+.+.+.|..+|..+ .+...++.|+.+
T Consensus 250 ~~~~~v~~Ll~~---~~~~vn~~d~~G~TpL~~-A~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~--- 315 (337)
T 4g8k_A 250 KHLGLVQRLLEQ---EHIEINDTDSDGKTALLL-AVELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS--- 315 (337)
T ss_dssp TCHHHHHHHHTS---TTCCTTCBCTTSCBHHHH-HHHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH---
T ss_pred hhhHHHHHHHHh---cCCcccCcCCCCCCHHHH-HHHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH---
Confidence 777665554432 233222 111223333 34566654 4445566777777654 333345666654
Q ss_pred HHHHHHHHCCCCCCH
Q 045814 395 HLFEEMAQKGIFRDV 409 (427)
Q Consensus 395 ~~~~~m~~~g~~p~~ 409 (427)
+.+-+.+.|-.||.
T Consensus 316 -iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 316 -LVKVLLSHGAKEDF 329 (337)
T ss_dssp -HHHHHHHTTCCC--
T ss_pred -HHHHHHHCcCCCCC
Confidence 45556677766664
No 301
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=52.07 E-value=15 Score=27.31 Aligned_cols=47 Identities=19% Similarity=0.188 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
.++..+...+..-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv 64 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEV 64 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCE
Confidence 34455555555666777777777776667777777777777777754
No 302
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=51.96 E-value=43 Score=25.64 Aligned_cols=66 Identities=14% Similarity=0.064 Sum_probs=46.7
Q ss_pred HHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc--CCCcCHhhHHHHHHHHHHcCCh
Q 045814 123 KVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM--GVFGSIKTWNSALLGCIKIDRT 189 (427)
Q Consensus 123 ~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~ 189 (427)
+.+.+.+++.|.+.+.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+.+.|-+
T Consensus 18 ~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 18 ERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 45666777778777553 345566677777888999999999887 6666766666666677666644
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=51.16 E-value=98 Score=26.54 Aligned_cols=49 Identities=14% Similarity=0.070 Sum_probs=23.1
Q ss_pred HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 045814 245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 304 (427)
++.|+.+ +.+.+.+.|..++..+ .+...++.|+.+ +.+.+.+.|-.||.
T Consensus 281 ~~~g~~~----iv~~Ll~~GAd~n~~~---~L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 281 VELKLKK----IAELLCKRGASTDCGD---LVMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HHTTCHH----HHHHHHTTSCSSTTCC---HHHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHcCCHH----HHHHHHHCCCCCCCCC---HHHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 3445543 3344455666555543 233334556543 34445556655553
No 304
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=50.94 E-value=25 Score=26.39 Aligned_cols=60 Identities=10% Similarity=0.119 Sum_probs=36.5
Q ss_pred HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
.+.+.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|..--++.+.+.|-+
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 4445566655432 23334444444 556777777777776666777777777777777654
No 305
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=50.92 E-value=17 Score=26.67 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 379 TLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 379 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
.+++.+...+..-.|.++++.+.+.+...+..|..-.++.+.+.|-+
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 61 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLV 61 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSE
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCE
Confidence 34455555566667777777777776667777777777777777754
No 306
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=49.85 E-value=29 Score=26.15 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=34.4
Q ss_pred HHHCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814 365 MLDKGYGETTVTYNTLIAGLCLHG-RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 365 m~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 425 (427)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|..--++.+...|-+
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445565544332 23334444444 4556777777777666666666666666666666654
No 307
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=49.26 E-value=87 Score=25.01 Aligned_cols=13 Identities=8% Similarity=0.099 Sum_probs=5.3
Q ss_pred HHcCChHHHHHHH
Q 045814 117 VEARAFKVAMDFL 129 (427)
Q Consensus 117 ~~~~~~~~a~~~~ 129 (427)
++.|+.+.+..++
T Consensus 17 ~~~g~~~~v~~Ll 29 (241)
T 1k1a_A 17 VVQGNLPAVHRLV 29 (241)
T ss_dssp HHTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHH
Confidence 3444444443333
No 308
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=49.18 E-value=51 Score=28.89 Aligned_cols=26 Identities=4% Similarity=0.201 Sum_probs=19.8
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHh
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMV 261 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~ 261 (427)
....++.-|...|+.++|.+.++++.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 35667788888888888888887764
No 309
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=48.48 E-value=85 Score=23.67 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC--HHHHHHHHHHHHHcCCC
Q 045814 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW--LGDARKMWFEMIHKGLL 336 (427)
Q Consensus 272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 336 (427)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 344555555566666666666555321111 12233333334443222 23445555555554433
No 310
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=47.97 E-value=2e+02 Score=27.85 Aligned_cols=266 Identities=9% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChHHHHHHHHhcCCCCCHH--hHHHHHHHHH-------hcCChhHHHHHHHHHHhcCCCcCHh---hHHH
Q 045814 111 VLFDSLVEARAFKVAMDFLDSTGFSPNPN--SLELYIQCLC-------ESGLIEEAFCAFSKLKEMGVFGSIK---TWNS 178 (427)
Q Consensus 111 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~li~~~~-------~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~ 178 (427)
.+|-.|.|+|++++|.++.++.+...... .|...+..|+ ....-++...-|++..+.....|+. .|..
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~I 236 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSSLDGDPYRLAVYKL 236 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCC------------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 045814 179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGK------------VSEGYELLRQVLEDGLVPENTAFNKLISRFCE 246 (427)
Q Consensus 179 ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 246 (427)
+..+=....+.++...-.++.. .++...-..+ +++-...+.+.-...+.+ .....+.-
T Consensus 237 ig~cD~~~~~~~~v~~siED~L----Wl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yGe~~F~~------lYf~vLlL 306 (661)
T 2qx5_A 237 IGRCDLSRKNIPAVTLSIEDWL----WMHLMLIKEKDAENDPVYERYSLEDFQNIIISYGPSRFSN------YYLQTLLL 306 (661)
T ss_dssp HHTCCGGGCCCGGGCCSHHHHH----HHHHHTCCC----------CCCHHHHHHHHHHHCGGGGTT------CHHHHHHH
T ss_pred HhcccccccchHHHhccHHHHH----HHHHHhccCCCcccccccccccHHHHHHHHHHhhhhhhhh------HHHHHHHH
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCHHHH
Q 045814 247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM---GWLGDA 323 (427)
Q Consensus 247 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a 323 (427)
.|+++.|.+.+... ...+.+++...+..|.-.+- =+.+......-...-+..||..|.+. .+..+|
T Consensus 307 tgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~-------~~~lls~~~~~~~lN~arLI~~Yt~~F~~td~~~A 375 (661)
T 2qx5_A 307 SGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI-------DSSTRLTKKPKRDIRFANILANYTKSFRYSDPRVA 375 (661)
T ss_dssp TTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHHH
T ss_pred HhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC-------CCcccccCCCcccccHHHHHHHHHHHhhcCCHHHH
Q ss_pred HHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHHH-----------HHHHHHHHCCCCCCh------hhHHHHHHHHH
Q 045814 324 RKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAK-----------RLHKEMLDKGYGETT------VTYNTLIAGLC 385 (427)
Q Consensus 324 ~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~-----------~~~~~m~~~~~~p~~------~~~~~li~~~~ 385 (427)
.++|--+...+ ..--.....++-......++++.-. -++++.... +..+. ........-+.
T Consensus 376 l~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~l-i~l~d~~~~~~~i~~~aA~~ae 454 (661)
T 2qx5_A 376 VEYLVLITLNEGPTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPL-LHVRDEKEFLHTITEQAARRAD 454 (661)
T ss_dssp HHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGG-GTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCchHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhcc-cccccHHHHHHHHHHHHHHHHH
Q ss_pred hcCCHHHHHHHHH
Q 045814 386 LHGRTDEAYHLFE 398 (427)
Q Consensus 386 ~~g~~~~A~~~~~ 398 (427)
..|++++|..+|.
T Consensus 455 ~~G~~~dAi~LY~ 467 (661)
T 2qx5_A 455 EDGRIYDSILLYQ 467 (661)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHH
No 311
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=47.22 E-value=1.7e+02 Score=26.84 Aligned_cols=84 Identities=11% Similarity=0.069 Sum_probs=56.5
Q ss_pred HcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHH
Q 045814 118 EARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH 197 (427)
Q Consensus 118 ~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 197 (427)
...+.+.|.++-.+.+++--...|..-...+...|++++|.++-..-.+ |+-.+..|.+.+-..=..-|+..-.+.+|.
T Consensus 341 ~l~n~~lA~~lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~ 419 (494)
T 1bpo_A 341 VLQNPDLALRMAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFG 419 (494)
T ss_dssp TTCCHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHH
T ss_pred ccCCHHHHHHHHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHH
Confidence 3578889999988888766666787788889999999999988765543 445566666654443333444444555555
Q ss_pred HHHhc
Q 045814 198 DLIES 202 (427)
Q Consensus 198 ~~~~~ 202 (427)
.+.+.
T Consensus 420 ~Ll~~ 424 (494)
T 1bpo_A 420 ILLDQ 424 (494)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 44443
No 312
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=46.77 E-value=93 Score=24.68 Aligned_cols=19 Identities=5% Similarity=-0.115 Sum_probs=10.4
Q ss_pred HHHHHHcCChhHHHHHHHH
Q 045814 180 LLGCIKIDRTDLVWKLYHD 198 (427)
Q Consensus 180 l~~~~~~~~~~~a~~~~~~ 198 (427)
+...+..|+.+....+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 4444556666665555543
No 313
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=46.54 E-value=75 Score=25.41 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=10.0
Q ss_pred HhhcCCHHHHHHHHHHHHH
Q 045814 349 YCRIDNLEEAKRLHKEMLD 367 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~ 367 (427)
.+..|+...+.++.+.+.+
T Consensus 217 A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 217 ASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp SCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555543
No 314
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=46.12 E-value=97 Score=23.65 Aligned_cols=60 Identities=10% Similarity=0.021 Sum_probs=43.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 045814 342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE--TTVTYNTLIA-G-----LCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~A~~~~~~m~~ 402 (427)
|...+..| ..|++-+|-++|+..-...-.+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 36 ~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 44444444 4499999999999988765555 5667788877 2 2357999999999988866
No 315
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=45.74 E-value=85 Score=22.84 Aligned_cols=64 Identities=11% Similarity=0.138 Sum_probs=29.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC--HHHHHHHHHHHHHcCCC
Q 045814 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW--LGDARKMWFEMIHKGLL 336 (427)
Q Consensus 272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~ 336 (427)
...++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 344555566666666666666665321111 12233333444444322 24455555555555443
No 316
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.66 E-value=40 Score=25.83 Aligned_cols=59 Identities=14% Similarity=0.078 Sum_probs=35.0
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhHHHHHHHHHHhcCCC
Q 045814 366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK--GIFRDVITYNTLIQGYCKEGKI 425 (427)
Q Consensus 366 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~ 425 (427)
.+.|++++.. =..++..+...+..-.|.++++.+.+. +...+..|..--++.+.+.|-+
T Consensus 25 ~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 25 RQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3445554432 234455555555666677777777666 5566666666666666666644
No 317
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.40 E-value=1e+02 Score=25.20 Aligned_cols=92 Identities=11% Similarity=0.143 Sum_probs=60.8
Q ss_pred HHHHHHHccCChhHHHHHHHHHhhC--CCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814 239 KLISRFCEKKNFGRVSELLHTMVAR--NRAP----DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH 312 (427)
Q Consensus 239 ~li~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~ 312 (427)
--++.+....++++|.+++++..+. +.++ +.......++.-.....-.-+..+.+++.. .++.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHH
Confidence 3578888999999999999976643 2221 112233334444444444445555555533 346667778889
Q ss_pred HHHccCCHHHHHHHHHHHHHc
Q 045814 313 GLCKMGWLGDARKMWFEMIHK 333 (427)
Q Consensus 313 ~~~~~g~~~~a~~~~~~m~~~ 333 (427)
.+.+.|+.++|.++|=+....
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs~ 120 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRSN 120 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHH
Confidence 999999999999999887654
No 318
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=45.21 E-value=1.5e+02 Score=25.50 Aligned_cols=195 Identities=15% Similarity=0.157 Sum_probs=92.7
Q ss_pred hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--hhHHHHHHHHHhhCCCCCCHhh---HHHHHHH
Q 045814 204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN--FGRVSELLHTMVARNRAPDNFT---YEEVING 278 (427)
Q Consensus 204 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~ 278 (427)
.++.-|...|+.++|...++++..... .......+|......++ .+.+-.++..+.. ++-+.... |..++..
T Consensus 8 ~ii~EYf~~~d~~Ea~~~l~el~~p~~--~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 8 PIIQEYFEHGDTNEVAEMLRDLNLGEM--KSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHCCHHHHHHHHHTTCCGGG--GGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCCcch--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 478889999999999999888643322 22233444444444444 3456667777754 33222222 2233322
Q ss_pred HHhcC-ChHHHHHHHHH----HHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH---HHHHc-----------C----C
Q 045814 279 LCKSR-KRLEAYRVFND----LKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF---EMIHK-----------G----L 335 (427)
Q Consensus 279 ~~~~~-~~~~a~~~~~~----m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~---~m~~~-----------~----~ 335 (427)
.-... +...|..++.. +...++-|-....... .+. ....+.+.++ .+... | .
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~----~~~-~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~ 159 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYK----GTV-DCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQ 159 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGT----TTC-CCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTT
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHH----hcc-cchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCC
Confidence 22111 22233333322 2233333222111100 011 1112222222 22211 1 1
Q ss_pred CCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCC
Q 045814 336 LPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR--TDEAYHLFEEMAQKGIFR 407 (427)
Q Consensus 336 ~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 407 (427)
.+.. .....++.-|...|+.++|.+.++++....+. ...+...+..++-+.++ .+.+.+++..+.+.|+-+
T Consensus 160 ~~~eelkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 1111 13567888899999999999999998532111 12333344444444333 344667777776655443
No 319
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=44.73 E-value=83 Score=23.36 Aligned_cols=67 Identities=19% Similarity=0.068 Sum_probs=45.7
Q ss_pred hHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh
Q 045814 122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189 (427)
Q Consensus 122 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 189 (427)
.+.+.+.+++.|.+.+..=. .++..+...+..-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44566677777777665432 34445555677788999999998887777777766667777666643
No 320
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=44.07 E-value=90 Score=22.69 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=38.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHCCC
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN--LEEAKRLHKEMLDKGY 370 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 370 (427)
....++.-|...|+.++|...++++...... .......+..++-+.++ .+....++..+.+.|+
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~ 74 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 74 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4566788888888888888888887522111 22333444445544432 3556667777766543
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=43.09 E-value=86 Score=23.64 Aligned_cols=64 Identities=11% Similarity=0.102 Sum_probs=38.9
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC--HHHHHHHHHHHHHCCC
Q 045814 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN--LEEAKRLHKEMLDKGY 370 (427)
Q Consensus 306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~ 370 (427)
....++.-|...|+.++|...++++...... ...+...+..++-+.++ .+.+..++..+.+.|+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~ 76 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSST 76 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCC
Confidence 4567788888889999999888887532111 22334444445544322 4456667777766543
No 322
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=42.38 E-value=1.3e+02 Score=23.95 Aligned_cols=54 Identities=13% Similarity=0.021 Sum_probs=27.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-----HHHHHHHHHHHHHCCCC
Q 045814 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-----LEEAKRLHKEMLDKGYG 371 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~~ 371 (427)
..+.+.|+-.+-+|.+.| .|.-..=..++.+.-..|. +..|...++.....|.+
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 456666666666666666 5444443444445544443 23344444444444543
No 323
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=42.31 E-value=1.1e+02 Score=24.73 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=10.2
Q ss_pred HHHHHcCChHHHHHHHHh
Q 045814 114 DSLVEARAFKVAMDFLDS 131 (427)
Q Consensus 114 ~~~~~~~~~~~a~~~~~~ 131 (427)
-.|.+.|.+++|.+++++
T Consensus 122 ~VCiek~~f~kA~eiLkr 139 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKK 139 (235)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcchHHHHHHHHH
Confidence 344555666666666655
No 324
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.10 E-value=82 Score=29.43 Aligned_cols=14 Identities=21% Similarity=0.185 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHcC
Q 045814 321 GDARKMWFEMIHKG 334 (427)
Q Consensus 321 ~~a~~~~~~m~~~~ 334 (427)
++|+.+..+|+..|
T Consensus 417 eeaE~iVAkmI~dG 430 (523)
T 4b4t_S 417 QTVEYMVSRAIRDG 430 (523)
T ss_dssp SCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC
Confidence 45666777776654
No 325
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=41.74 E-value=24 Score=21.70 Aligned_cols=34 Identities=12% Similarity=0.002 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHhcCCCcCHhhHHHHHHHH-HHcC
Q 045814 154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGC-IKID 187 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~ 187 (427)
.++|.+.|.+|++..-.++..+|...|+.+ ++..
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 368899998888665555778999999888 5544
No 326
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=41.20 E-value=1.2e+02 Score=23.40 Aligned_cols=94 Identities=11% Similarity=-0.037 Sum_probs=38.2
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhc
Q 045814 280 CKSRKRLEAYRVFNDLKERGYVPDTV---MYTTVIHGLCK-MGWLGDARKMWFEMIHKGLLPNEYT---YNSMIHGYCRI 352 (427)
Q Consensus 280 ~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~ 352 (427)
+..|+.+.-.++.+.+.+.|..++.. -.+.|..++.. ..+.....++.+.+.+.|..++... .++.+...+..
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~ 125 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNY 125 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGC
T ss_pred HHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHc
Confidence 34444444444555555555444322 11222222211 1223334455555666665544321 10222222222
Q ss_pred CCH-HHHHHHHHHHHH-CCCCCC
Q 045814 353 DNL-EEAKRLHKEMLD-KGYGET 373 (427)
Q Consensus 353 g~~-~~a~~~~~~m~~-~~~~p~ 373 (427)
+.. ..-..+++.+.+ .|..++
T Consensus 126 ~~~~~~~~~iv~~Ll~~~gad~~ 148 (186)
T 3t8k_A 126 FVDENEMIPLYKLIFSQSGLQLL 148 (186)
T ss_dssp CSCHHHHHHHHHHHHTSTTCCTT
T ss_pred CCChhhHHHHHHHHHHhcCCCCc
Confidence 222 233455666666 555544
No 327
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.01 E-value=85 Score=23.33 Aligned_cols=64 Identities=11% Similarity=0.009 Sum_probs=42.9
Q ss_pred HHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh
Q 045814 124 VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT 189 (427)
Q Consensus 124 ~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~ 189 (427)
...+.+++.|.+++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+.+.|-+
T Consensus 5 ~~~~~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv 68 (145)
T 3eyy_A 5 DWKSDLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLV 68 (145)
T ss_dssp THHHHHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcE
Confidence 35566777787776542 22344444555 778999999999887777777666666666666643
No 328
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=39.47 E-value=68 Score=25.70 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=28.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHHCCCCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTV--TYNTLIAGLCLHGRTDEAYHLFEEMAQK 403 (427)
Q Consensus 347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~ 403 (427)
...++.|+.+-+ +.+.+.|..++.. .-.+-+...+..|+...++++.+.+.+.
T Consensus 182 ~~A~~~~~~~~v----~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 182 HIAARENRYDCV----VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp HHHHHTTCHHHH----HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCHhHH----HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334455665443 3334445444321 1123334445677788888888887763
No 329
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=39.42 E-value=2.2e+02 Score=25.91 Aligned_cols=142 Identities=13% Similarity=0.069 Sum_probs=76.2
Q ss_pred ChhHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-C---CCHhhHHHHHHHHHh
Q 045814 214 KVSEGYELLRQVLED--------GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-A---PDNFTYEEVINGLCK 281 (427)
Q Consensus 214 ~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~---~~~~~~~~ll~~~~~ 281 (427)
..++...+++..... ++..+......++.. -.|+..++..+++.+..... . ....+...+-.+..+
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 355666666666543 233455666666655 36788888888877665422 1 012222222222111
Q ss_pred cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----
Q 045814 282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC---KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN---- 354 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~---~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---- 354 (427)
... . ...+...+.-+++++. +.++.+.|+.++.+|.+.|..|....=..++.+.-..|.
T Consensus 244 ~~~-------------~-~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~ 309 (447)
T 3pvs_A 244 RSA-------------R-FDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPR 309 (447)
T ss_dssp CCC-------------C----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTH
T ss_pred hhh-------------c-cCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChh
Confidence 100 0 0001112222444443 457899999999999999887766555556666666663
Q ss_pred -HHHHHHHHHHHHHCCCC
Q 045814 355 -LEEAKRLHKEMLDKGYG 371 (427)
Q Consensus 355 -~~~a~~~~~~m~~~~~~ 371 (427)
+..|...++.....|.+
T Consensus 310 a~~~~~~~~~~~~~~g~p 327 (447)
T 3pvs_A 310 AMQVAIAAWDCFTRVGPA 327 (447)
T ss_dssp HHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHHhCCc
Confidence 34455556666556653
No 330
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.41 E-value=1.9e+02 Score=25.03 Aligned_cols=17 Identities=0% Similarity=0.006 Sum_probs=9.5
Q ss_pred HHHHcCChHHHHHHHHh
Q 045814 115 SLVEARAFKVAMDFLDS 131 (427)
Q Consensus 115 ~~~~~~~~~~a~~~~~~ 131 (427)
..+..|+.+.+..+++.
T Consensus 26 ~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 26 VAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHc
Confidence 33455666666666554
No 331
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=39.33 E-value=1.4e+02 Score=23.62 Aligned_cols=37 Identities=8% Similarity=-0.096 Sum_probs=17.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353 (427)
Q Consensus 317 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 353 (427)
..+.+.|+-.+-+|++.|-.|.-..=..++-+.-..|
T Consensus 20 GSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 20 GSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455555555555555554444333333333433333
No 332
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=39.32 E-value=1.2e+02 Score=23.95 Aligned_cols=87 Identities=15% Similarity=0.055 Sum_probs=48.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC---------ChhhHHH
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYT--YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE---------TTVTYNT 379 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---------~~~~~~~ 379 (427)
+...+..|+.+-+..+ .+.|..++... -.+.+...+..|+.+.+..+++.+.+.|..+ |..-.+.
T Consensus 125 L~~A~~~~~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tp 200 (232)
T 2rfa_A 125 LSFAACVGSEEIVRLL----IEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTP 200 (232)
T ss_dssp HHHHHHHTCHHHHHHH----HHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHH----HHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCH
Confidence 3444456666544443 44555443221 1233445567788888888888888876543 2333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 045814 380 LIAGLCLHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 380 li~~~~~~g~~~~A~~~~~~m~~ 402 (427)
+...+..|+.+-+.-+++.-..
T Consensus 201 -l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 201 -FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp -HHHHHHHTCHHHHHHHHHHHHH
T ss_pred -HHHHHHcCCHHHHHHHHhcCcc
Confidence 3444567777766666655444
No 333
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=36.19 E-value=1.6e+02 Score=23.27 Aligned_cols=56 Identities=13% Similarity=-0.052 Sum_probs=31.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCC---------ChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERGYVP---------DTVMYTTVIHGLCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~~~p---------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 332 (427)
+...+..|+.+-+..+++.+.+.|..+ |..-.+ .+...++.|+.+-+..+++.-..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~t-pl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLT-PFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCC-HHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCC-HHHHHHHcCCHHHHHHHHhcCcc
Confidence 444456677777766667766665432 222233 34444556777666666655443
No 334
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=36.02 E-value=2.5e+02 Score=25.54 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=36.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-----HHHHHHHHHHHHHcCC
Q 045814 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW-----LGDARKMWFEMIHKGL 335 (427)
Q Consensus 281 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~ 335 (427)
+.++.+.|...+.+|.+.|..|....=..++.+...-|. ...|...++.....|.
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g~ 326 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGP 326 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSCH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhCC
Confidence 467899999999999998877665555555555555554 3344555555555554
No 335
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=35.27 E-value=1.6e+02 Score=22.93 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=35.4
Q ss_pred HHhhcCCHHHHHHHHHHHHHCCCC--C--------------C-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045814 348 GYCRIDNLEEAKRLHKEMLDKGYG--E--------------T-TVTYNTLIAGLCLHGRTDEAYHLFEEM 400 (427)
Q Consensus 348 ~~~~~g~~~~a~~~~~~m~~~~~~--p--------------~-~~~~~~li~~~~~~g~~~~A~~~~~~m 400 (427)
+|-+.+++.+|...++.+.+..+. | | ...|+.+...+...|+.++|...+..-
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 445666777777777766644332 1 1 245677778888899999999887653
No 336
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.16 E-value=1.4e+02 Score=22.28 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=15.9
Q ss_pred HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 045814 242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280 (427)
Q Consensus 242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 280 (427)
..+...+..-.|.++++.+.+.+...+..|.-..++.+.
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 72 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLE 72 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHH
Confidence 333333334445555555544433333333333333333
No 337
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=34.79 E-value=2.2e+02 Score=24.43 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=47.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCChhh
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK--RLEAYRVFNDLKERGYVPDTVM 306 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~ 306 (427)
....++.-|...|+.++|.+.++++...... ...+...+..++-+.++ .+.+..++..+.+.|+-+....
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~ 239 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQM 239 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHH
Confidence 3567888888899999999999998643222 23455566666665433 4557788888887766544333
No 338
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=34.47 E-value=1.8e+02 Score=23.33 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=10.9
Q ss_pred cCChHHHHHHHHHHHhCCCCCC
Q 045814 282 SRKRLEAYRVFNDLKERGYVPD 303 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p~ 303 (427)
-.+++.|+-.+-+|.+.|-.|.
T Consensus 48 GSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 48 GSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHH
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 3455555555555555544433
No 339
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=33.89 E-value=2.1e+02 Score=24.71 Aligned_cols=46 Identities=7% Similarity=-0.094 Sum_probs=23.5
Q ss_pred HhhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814 349 YCRIDNLEEAKRLHKEMLDKGYGETT---VTYNTLIAGLCLHGRTDEAYHLFEE 399 (427)
Q Consensus 349 ~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~ 399 (427)
.+..|+.+- .+.+.+.|..++. .-.+. +...+..|+.+-+.-+++.
T Consensus 218 A~~~g~~~~----v~~Ll~~gad~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 218 AILINWEDV----AMRFVEMGIDVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HHTTTCHHH----HHHHHTTTCCTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred HHHcCCHHH----HHHHHHcCCCCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 345666554 3444455554443 22223 3334566777766666654
No 340
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.55 E-value=1.4e+02 Score=27.80 Aligned_cols=65 Identities=8% Similarity=0.033 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCH--hhHH-HHHHHHHhcCChHHHHHHHHHHHhC
Q 045814 234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDN--FTYE-EVINGLCKSRKRLEAYRVFNDLKER 298 (427)
Q Consensus 234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~-~ll~~~~~~~~~~~a~~~~~~m~~~ 298 (427)
...+|.+++.|...+.++.|..+..+..--.. .++. ..|. -+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34577777777778888888888776631100 0111 1111 2234455667777787777776554
No 341
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=33.05 E-value=1.6e+02 Score=22.47 Aligned_cols=103 Identities=15% Similarity=0.186 Sum_probs=62.1
Q ss_pred HHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 045814 90 IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168 (427)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g 168 (427)
++.++|+.....-......+..++. .+...|.. -...-|+.-...-|..--.. +.+.++|..|...|
T Consensus 23 ~~yIkW~e~~~p~~~~~s~L~~lLE---------rc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~ 90 (164)
T 2wvi_A 23 DRYISWTEQNYPQGGKESNMSTLLE---------RAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQG 90 (164)
T ss_dssp HHHHHHHHHHCCC----CCHHHHHH---------HHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCcCCCccchHHHHHH---------HHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCC
Confidence 4678888665311001112233333 33344433 23344554444333222222 45888999999887
Q ss_pred CCc-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch
Q 045814 169 VFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204 (427)
Q Consensus 169 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 204 (427)
+-- -+..|......+...|++.+|.++|..-++.+.
T Consensus 91 IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A 127 (164)
T 2wvi_A 91 IGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKA 127 (164)
T ss_dssp SSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 654 356788888889999999999999999888764
No 342
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=32.96 E-value=1.7e+02 Score=22.57 Aligned_cols=23 Identities=4% Similarity=-0.025 Sum_probs=9.8
Q ss_pred HccCChhHHHHHHHHHhhCCCCC
Q 045814 245 CEKKNFGRVSELLHTMVARNRAP 267 (427)
Q Consensus 245 ~~~~~~~~a~~~~~~m~~~~~~~ 267 (427)
+..|+.+.-.++.+.+.+.|..+
T Consensus 46 ~~~~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 46 LRNNNDEARYKISMFLINKGADI 68 (186)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCCS
T ss_pred HHcCCcchHHHHHHHHHHCCCCC
Confidence 33444433344444444444433
No 343
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.81 E-value=72 Score=23.17 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=20.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (427)
++.+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3333344444455555555555444444444444444444444
No 344
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=32.52 E-value=1.4e+02 Score=21.68 Aligned_cols=32 Identities=6% Similarity=0.040 Sum_probs=13.8
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 045814 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLC 280 (427)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 280 (427)
..-.|.++++.+.+.+...+..|...-++.+.
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~ 64 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFE 64 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Confidence 34445555555554443333333333333333
No 345
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.86 E-value=2.5e+02 Score=24.26 Aligned_cols=133 Identities=17% Similarity=0.091 Sum_probs=0.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc--chhHHHHHhc---CChhHHH
Q 045814 145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--GYLIQAFCND---GKVSEGY 219 (427)
Q Consensus 145 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~l~~~~~~~---g~~~~a~ 219 (427)
..-+...|++++|+..|..+ .+...+.......+.+++.++.....+. +.-++.-.+. .+.....
T Consensus 121 gyk~~t~gKf~eAl~~Fr~i----------L~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~l 190 (325)
T 3mv2_A 121 GYKNFKLNKPDIAIECFREA----------IYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRML 190 (325)
T ss_dssp HHHHHHTTCHHHHHHHHHHH----------HHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHH----------HHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q ss_pred HHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH
Q 045814 220 ELLRQVLEDGLVP--ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287 (427)
Q Consensus 220 ~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 287 (427)
++-.-+-.-.+.| -.-+....|....+.+++..|..+-+++.+.+..++...-..-+..-+...-.+.
T Consensus 191 ELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~~~~Da 260 (325)
T 3mv2_A 191 ELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADSMASDA 260 (325)
T ss_dssp HHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHTSCCCS
T ss_pred HHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCc
No 346
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=31.48 E-value=1.6e+02 Score=22.64 Aligned_cols=50 Identities=14% Similarity=-0.029 Sum_probs=27.7
Q ss_pred CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 045814 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE 233 (427)
Q Consensus 172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 233 (427)
....|.++-..|...|...-|..+.....+ ..+.|..+++.+...|..|+
T Consensus 22 as~~Yl~~a~~~~~~~l~g~a~~f~~~a~E------------E~~HA~~l~~~i~~~gg~~~ 71 (173)
T 1s3q_A 22 SAYLYLSMASYFDSIGLKGFSNWMRVQWQE------------ELMHAMKMFDFVSERGGRVK 71 (173)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------HHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHhHcChHHHHHHHHHHHHH------------HHHHHHHHHHHHHHcCCCcc
Confidence 344555555555555544444444443332 24567777777777776654
No 347
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.05 E-value=2.8e+02 Score=24.48 Aligned_cols=21 Identities=19% Similarity=0.485 Sum_probs=10.6
Q ss_pred hHHHHHhcCChhHHHHHHHHH
Q 045814 205 LIQAFCNDGKVSEGYELLRQV 225 (427)
Q Consensus 205 l~~~~~~~g~~~~a~~~~~~~ 225 (427)
++.-|...|+.++|.+.++++
T Consensus 18 ii~EY~~~~D~~Ea~~~l~eL 38 (364)
T 3l6a_A 18 VVTEYLNSGNANEAVNGVREM 38 (364)
T ss_dssp HHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHh
Confidence 344455555555555555554
No 348
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=30.87 E-value=66 Score=23.73 Aligned_cols=43 Identities=16% Similarity=0.167 Sum_probs=18.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (427)
++.+...+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 20 l~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 20 SAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 3333333344445555555544444334444333444444443
No 349
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=30.76 E-value=2e+02 Score=25.05 Aligned_cols=146 Identities=12% Similarity=0.192 Sum_probs=75.5
Q ss_pred chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 045814 203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK-NFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281 (427)
Q Consensus 203 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 281 (427)
..++.-|...|+.++|...++++...... ...+...+..++-+.. ..+.+..++..+.+.|+ .+-..+..++
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~----is~~~~~~Gf-- 87 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH----LSTAQYYQGL-- 87 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS----SCHHHHHHHH--
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC----CCHHHHHHHH--
Confidence 45899999999999999998887532221 1222222232322211 24456666666666543 2333444443
Q ss_pred cCChHHHHHHHHHHHhCCC-CCChhhHHHHHHH-HHccCCHHH--H-HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814 282 SRKRLEAYRVFNDLKERGY-VPDTVMYTTVIHG-LCKMGWLGD--A-RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE 356 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~-~~~~g~~~~--a-~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~ 356 (427)
.++++.+.+..+ .|....+-.-+-+ +...|-+.. . ..+.+.+...|. -......++..+.+....+
T Consensus 88 -------~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~g~~ 158 (339)
T 1ug3_A 88 -------YEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSMGPK 158 (339)
T ss_dssp -------HHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHHCHH
T ss_pred -------HHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHcCHH
Confidence 233444433322 2555544433333 333444332 1 223333444442 3345566677777777788
Q ss_pred HHHHHHHH
Q 045814 357 EAKRLHKE 364 (427)
Q Consensus 357 ~a~~~~~~ 364 (427)
.+.++|.+
T Consensus 159 ~l~~~~~~ 166 (339)
T 1ug3_A 159 KVGTLWRE 166 (339)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888874
No 350
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=30.22 E-value=79 Score=28.00 Aligned_cols=66 Identities=15% Similarity=0.174 Sum_probs=38.0
Q ss_pred HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCC
Q 045814 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK-RLEAYRVFNDLKERGYV 301 (427)
Q Consensus 236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~ 301 (427)
....+|.-|...|+.++|...++++.....-....++..+..++-+... -+.+-.++..+...|+-
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~l 80 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIA 80 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCC
Confidence 5677888899999999999999987532100012333444444333211 23455666666665543
No 351
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=30.03 E-value=1.1e+02 Score=19.67 Aligned_cols=62 Identities=16% Similarity=0.028 Sum_probs=38.4
Q ss_pred HHHHHhcCCCCCHHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCC
Q 045814 126 MDFLDSTGFSPNPNSLELYIQCLCESG-LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188 (427)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 188 (427)
.+.+++.|...+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|-
T Consensus 5 ~~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 5 NTALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344556666655443 33445555544 566788888888777666666666666666666654
No 352
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=29.77 E-value=1.8e+02 Score=21.94 Aligned_cols=51 Identities=22% Similarity=0.280 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 045814 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337 (427)
Q Consensus 285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 337 (427)
.+.+..+++.+.+.|..-|...-...+....+.| .....+-.++...|+.+
T Consensus 46 ~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~KGI~~ 96 (159)
T 3c1d_A 46 AEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQKGISR 96 (159)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHcCCCH
Confidence 4456666777777776644444445555554433 23445666777777653
No 353
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=29.70 E-value=4.6e+02 Score=26.58 Aligned_cols=158 Identities=9% Similarity=0.047 Sum_probs=89.9
Q ss_pred HHHHHHHHccCC---hhHHHHHHHHHhhCC----CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814 238 NKLISRFCEKKN---FGRVSELLHTMVARN----RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310 (427)
Q Consensus 238 ~~li~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 310 (427)
..++...|..|. .+.|.+.|+.....+ +.||. -..+...-.+.|..++-..+++...... +..--..+
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dl--r~~vy~~~~~~g~~~~~~~l~~~~~~~~---~~~ek~~l 764 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNL--RSTIYCNAIAQGGQDQWDFAWGQLQQAQ---LVNEADKL 764 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTT--HHHHHHHHHHHSCHHHHHHHHHHHHHCC---SHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHH--HHHHHHHHHHhCCHHHHHHHHHHHHccC---CHHHHHHH
Confidence 446667777776 457788888766532 34553 3334444456677777667777776652 44445678
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHH
Q 045814 311 IHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRI-DNLEEAKRLHKEMLD---KGYGETTVTYNTLIAGLC 385 (427)
Q Consensus 311 i~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~ 385 (427)
+.+++...+.+...++++.....+ +++.. ... ++.+.+.. ...+.|.+.+.+=.+ ..+......+..+|....
T Consensus 765 l~aL~~~~d~~~l~~~L~~~l~~~~ir~qd-~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~~ 842 (909)
T 4fke_A 765 RSALACSNEVWLLNRYLGYTLNPDLIRKQD-ATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGVT 842 (909)
T ss_dssp HHHHTTCCCHHHHHHHHHHTTCTTTSCGGG-HHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHhCCCCCchhh-HHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 888888888888888887776543 34332 222 33333322 123444444433211 122334456778888777
Q ss_pred hcCCHHHHHHHHHHHHH
Q 045814 386 LHGRTDEAYHLFEEMAQ 402 (427)
Q Consensus 386 ~~g~~~~A~~~~~~m~~ 402 (427)
..-..++-.+-++...+
T Consensus 843 ~~~~t~~~~~~~~~f~~ 859 (909)
T 4fke_A 843 RRFSSEFELQQLEQFKK 859 (909)
T ss_dssp TTCCSHHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHHh
Confidence 66555555555555544
No 354
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=29.67 E-value=1e+02 Score=25.05 Aligned_cols=22 Identities=9% Similarity=0.087 Sum_probs=10.9
Q ss_pred HHccCChhHHHHHHHHHhhCCC
Q 045814 244 FCEKKNFGRVSELLHTMVARNR 265 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~m~~~~~ 265 (427)
.++.|+.+.+..+++.+.+.|.
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 3445555555555554444443
No 355
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=29.52 E-value=1.6e+02 Score=21.94 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=15.5
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 045814 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR 283 (427)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 283 (427)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555555444434444333334433333
No 356
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=27.43 E-value=2.1e+02 Score=26.97 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHH--ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814 237 FNKLISRFC--EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314 (427)
Q Consensus 237 ~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~ 314 (427)
|..-|..+. ...+.+.....++++..+-.--+..--.-++..|.+.|-.+.|.+++..+-..-.. +...| ..+..|
T Consensus 482 W~vgI~yL~~~~~~~~~~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~-~g~~g-eAL~~f 559 (570)
T 3f3f_C 482 WPVAIGLIALSATGTRSAKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLS-AHNII-ESIANF 559 (570)
T ss_dssp HHHHHHHHHHCSSSCHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-----------------
T ss_pred hhHHHHHHhcCCccchhHHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHH-CccHH-HHHHHH
Q ss_pred HccCCHHHH
Q 045814 315 CKMGWLGDA 323 (427)
Q Consensus 315 ~~~g~~~~a 323 (427)
+++|+++..
T Consensus 560 ~rA~~~~~V 568 (570)
T 3f3f_C 560 SRAGKYELV 568 (570)
T ss_dssp ---------
T ss_pred HHcCChhhc
No 357
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=26.73 E-value=2.4e+02 Score=22.40 Aligned_cols=17 Identities=24% Similarity=0.474 Sum_probs=7.9
Q ss_pred CChhHHHHHHHHHHHCC
Q 045814 213 GKVSEGYELLRQVLEDG 229 (427)
Q Consensus 213 g~~~~a~~~~~~~~~~~ 229 (427)
.+.+.|+-++-+|++.|
T Consensus 28 SDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG 44 (204)
T ss_dssp TCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcC
Confidence 34444444444444444
No 358
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=26.70 E-value=91 Score=22.79 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=8.3
Q ss_pred HHccCChhHHHHHHHH
Q 045814 244 FCEKKNFGRVSELLHT 259 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~ 259 (427)
.+..|+.+.+..+++.
T Consensus 9 A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 9 AAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHTCHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHh
Confidence 3445555555555544
No 359
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=26.62 E-value=1.6e+02 Score=20.25 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=15.0
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 045814 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388 (427)
Q Consensus 358 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 388 (427)
|.++.+++..-|+.|+..+...++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444455555555555555444443
No 360
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=25.87 E-value=2.2e+02 Score=21.67 Aligned_cols=51 Identities=10% Similarity=0.005 Sum_probs=31.6
Q ss_pred cCChHHHHHHHHHHHhCCCCC--ChhhHHHHHH-H-----HHccCCHHHHHHHHHHHHH
Q 045814 282 SRKRLEAYRVFNDLKERGYVP--DTVMYTTVIH-G-----LCKMGWLGDARKMWFEMIH 332 (427)
Q Consensus 282 ~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~-~-----~~~~g~~~~a~~~~~~m~~ 332 (427)
.|++-+|-++|+..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 377777777777775554334 3445555555 2 2345777777777777654
No 361
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=25.59 E-value=5.4e+02 Score=26.06 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCC---hhHHHHHHHHHHhcC----CCcCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045814 142 ELYIQCLCESGL---IEEAFCAFSKLKEMG----VFGSIKTWNSALLGCIKIDRTDLVWKLYHDL 199 (427)
Q Consensus 142 ~~li~~~~~~~~---~~~A~~~~~~m~~~g----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 199 (427)
..++...|..|. .+.|.+.|+.....+ +.||.. ..+...-.+.|..++-..+++..
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~ 752 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQL 752 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHH
Confidence 345666777776 456777887766432 445432 22333333445544433343333
No 362
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.39 E-value=2.7e+02 Score=22.54 Aligned_cols=51 Identities=14% Similarity=-0.083 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHhcCCCc-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch
Q 045814 154 IEEAFCAFSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY 204 (427)
Q Consensus 154 ~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 204 (427)
.+.+.++|..|...|+-- -+..|......+...|++.+|..+|+.-++.+.
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 357889999999887654 456788888999999999999999999888754
No 363
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=24.99 E-value=1.7e+02 Score=20.09 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=14.6
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 045814 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMG 318 (427)
Q Consensus 288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g 318 (427)
|.++.+++...|+.|+..+..-++..|...+
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 3444444444555555544444444444433
No 364
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=24.87 E-value=1.1e+02 Score=23.31 Aligned_cols=19 Identities=16% Similarity=0.083 Sum_probs=11.9
Q ss_pred hhHHHHHHHHHHHCCCCCC
Q 045814 215 VSEGYELLRQVLEDGLVPE 233 (427)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~ 233 (427)
.+.|..+++.+...|..|+
T Consensus 51 ~~HA~~l~~~i~~~gG~~~ 69 (167)
T 1krq_A 51 SDHAKKLITYLNETDSHVE 69 (167)
T ss_dssp HHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 4566677777766665553
No 365
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.27 E-value=6e+02 Score=25.84 Aligned_cols=109 Identities=14% Similarity=0.021 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh--------------
Q 045814 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-------------- 375 (427)
Q Consensus 310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------------- 375 (427)
++..|...|..+-|.++. ..++-+...--.+..+|...|++++|.+.|++....=..++..
T Consensus 816 l~~~L~~~~~~~~a~eL~-----~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~ 890 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI-----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 890 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG-----GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHT
T ss_pred HHHHHHHhcHHHHHHHHH-----hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcc
Q ss_pred --------hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----HHHHHHHHHHhcC
Q 045814 376 --------TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI----TYNTLIQGYCKEG 423 (427)
Q Consensus 376 --------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g 423 (427)
-|..++..+-+.+.++.+.++-+...+.--.-|.. .|..++++.|..|
T Consensus 891 e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 891 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 366
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=22.77 E-value=2.9e+02 Score=21.90 Aligned_cols=20 Identities=5% Similarity=0.004 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHHhhCCCCC
Q 045814 248 KNFGRVSELLHTMVARNRAP 267 (427)
Q Consensus 248 ~~~~~a~~~~~~m~~~~~~~ 267 (427)
.|.+.|+-.+-+|++.|..|
T Consensus 21 SDpDAAly~LaRMl~~GEDp 40 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDP 40 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCH
T ss_pred CCHHHHHHHHHHHHHcCCCH
Confidence 34444444444444444443
No 367
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=21.49 E-value=2.7e+02 Score=21.03 Aligned_cols=19 Identities=16% Similarity=0.340 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHCCCCCC
Q 045814 215 VSEGYELLRQVLEDGLVPE 233 (427)
Q Consensus 215 ~~~a~~~~~~~~~~~~~~~ 233 (427)
.+.|..+++.+...|..|+
T Consensus 51 ~~HA~~l~~~i~~~gg~~~ 69 (165)
T 1eum_A 51 MTHMQRLFDYLTDTGNLPR 69 (165)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 4566677777776665554
No 368
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=21.09 E-value=2.4e+02 Score=22.97 Aligned_cols=51 Identities=6% Similarity=0.033 Sum_probs=25.5
Q ss_pred HHccCChhHHHHHHHHHhhCCCCC-------CHhhHHHHHHHHH--hcCChHHHHHHHHH
Q 045814 244 FCEKKNFGRVSELLHTMVARNRAP-------DNFTYEEVINGLC--KSRKRLEAYRVFND 294 (427)
Q Consensus 244 ~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~ 294 (427)
.++.|+.+.+..+++...+.+... |..-++.|..+.. +.|+.+-+..+++.
T Consensus 20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 345566666666666555444322 2233444444443 24666555555554
No 369
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=20.11 E-value=1.8e+02 Score=23.49 Aligned_cols=93 Identities=11% Similarity=-0.044 Sum_probs=51.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCC--------
Q 045814 276 INGLCKSRKRLEAYRVFNDLKERGYVPDT-------VMYTTVIHGLCKM---GWLGDARKMWFEMIHKGLLP-------- 337 (427)
Q Consensus 276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p-------- 337 (427)
+...++.|+.+.+..+++.+.+.|..++. .-.+.|..++ .. |+.+-+..+++.-...+...
T Consensus 6 L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~-~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 6 LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAV-LNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHH-HTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHH-HccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 44556788998888888887777665443 3344444444 44 77777777776654432111
Q ss_pred --CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh
Q 045814 338 --NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374 (427)
Q Consensus 338 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 374 (427)
|..-.+.| ...+..|+.+-+..+ .+.|..++.
T Consensus 85 ~~d~~g~t~L-~~A~~~g~~~~v~~L----l~~ga~~~~ 118 (256)
T 2etb_A 85 DEFYQGHSAL-HIAIEKRSLQCVKLL----VENGADVHL 118 (256)
T ss_dssp STTTTTCCHH-HHHHHTTCHHHHHHH----HHTTCCTTC
T ss_pred cccccCCCHH-HHHHHcCCHHHHHHH----HHcCCCCCc
Confidence 12223333 334566776655444 445554443
No 370
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=20.01 E-value=1.9e+02 Score=19.62 Aligned_cols=33 Identities=12% Similarity=0.125 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR 285 (427)
Q Consensus 249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 285 (427)
..++|.++++.+..+|. ..|..++.++...|..
T Consensus 52 ~~~~ar~Lld~L~~rG~----~Af~~F~~aL~et~~~ 84 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGS----QALPLFISCLEDTGQD 84 (97)
T ss_dssp HHHHHHHHHHHHTTSCT----THHHHHHHHHHTTTCH
T ss_pred hHHHHHHHHHHHHHcCh----HHHHHHHHHHHHcCcH
Confidence 34445555554444432 2444444444443433
Done!