BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045817
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BV7|A Chain A, Crystal Structure Of Gltp With Bound Gm3
Length = 208
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 22 EMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGE 80
++ T PFLE + P D G+ + + +K+DI GNIT+++ Y ++P K++ L +++
Sbjct: 16 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 75
Query: 81 EVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL------AHPDWTMPQVCTDSYSKT 133
E E A+ T L+WL R + F+ +++ HP+ T +Y
Sbjct: 76 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVN-ATKAYEMA 134
Query: 134 LKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 172
LKK+HGWI F A+ AP + F++ + +V +
Sbjct: 135 LKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 173
>pdb|1TFJ|A Chain A, Crystal Structure Of Bovine Glycolipid Transfer Protein In
Complex With A Fatty Acid
Length = 219
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 22 EMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGE 80
++ T PFLE + P D G+ + + +K+DI GNIT+++ Y ++P K++ L +++
Sbjct: 27 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 86
Query: 81 EVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL------AHPDWTMPQVCTDSYSKT 133
E E A+ T L+WL R + F+ +++ HP+ T +Y
Sbjct: 87 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVN-ATKAYEMA 145
Query: 134 LKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 172
LKK+HGWI F A+ AP + F++ + +V +
Sbjct: 146 LKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 184
>pdb|1SWX|A Chain A, Crystal Structure Of A Human Glycolipid Transfer Protein
In Apo-Form
pdb|1SX6|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein In
Lactosylceramide-Bound Form
pdb|2EUK|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 24:1 Galactosylceramide
pdb|2EUM|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 8:0 Lactosylceramide
pdb|2EVD|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 12:0 Lactosylceramide
pdb|2EVL|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 18:2 Galactosylceramide
pdb|2EVS|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|2EVS|E Chain E, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With N-Hexyl-Beta-D-Glucoside
pdb|3RWV|A Chain A, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RWV|B Chain B, Crystal Structure Of Apo-Form Of Human Glycolipid Transfer
Protein At 1.5 A Resolution
pdb|3RZN|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With 3-O-Sulfo-Galactosylceramide Containing
Nervonoyl Acyl Chain (24:1)
pdb|3S0K|A Chain A, Crystal Structure Of Human Glycolipid Transfer Protein
Complexed With Glucosylceramide Containing Oleoyl Acyl
Chain (18:1)
Length = 209
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 22 EMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGE 80
++ T PFLE + P D G+ + + +K+DI GNIT+++ Y ++P K++ L +++
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 81 EVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL------AHPDWTMPQVCTDSYSKT 133
E E A+ T L+WL R + F+ +++ HP+ T +Y
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVN-ATKAYEMA 135
Query: 134 LKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 172
LKK+HGWI F A+ AP + F++ + +V +
Sbjct: 136 LKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174
>pdb|1WBE|A Chain A, X-Ray Structure Of Bovine Gltp
Length = 209
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 80/159 (50%), Gaps = 9/159 (5%)
Query: 22 EMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGE 80
++ T PFLE + P D G+ + + +K+DI GNIT+++ Y ++P K++ L +++
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPTKFRTLQNILEV 76
Query: 81 EVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL------AHPDWTMPQVCTDSYSKT 133
E E A+ T L+WL R + F+ +++ HP+ T +Y
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVN-ATKAYEMA 135
Query: 134 LKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 172
LKK+HGWI F A+ AP + F++ + +V +
Sbjct: 136 LKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174
>pdb|2I3F|A Chain A, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2I3F|B Chain B, Crystal Structure Of A Glycolipid Transfer-Like Protein
From Galdieria Sulphuraria
pdb|2Q52|A Chain A, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
pdb|2Q52|B Chain B, Ensemble Refinement Of The Crystal Structure Of A
Glycolipid Transfer- Like Protein From Galdieria
Sulphuraria
Length = 224
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 74/141 (52%), Gaps = 8/141 (5%)
Query: 19 EQGEMLTKPFLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMV 78
E G++ +PFL K +L V+D FG+ +VK+DI GNI +L Y ++ + +++
Sbjct: 26 EDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKL---YRAN----QTVHAET 78
Query: 79 GEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFH 138
+E+ T LLWL RA F+ R L+ D ++ Q T++Y+ TL+ H
Sbjct: 79 LQELIIAENSPDGLATVALLWLKRAFQFIASFLRRLVV-TDKSLEQCVTEAYNCTLRPCH 137
Query: 139 GWIASSSFTVAMKLAPDRKKF 159
+ F +KLAP R++F
Sbjct: 138 SAVIQKVFWGGVKLAPSRERF 158
>pdb|2EVT|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein
pdb|3S0I|A Chain A, Crystal Structure Of D48v Mutant Of Human Glycolipid
Transfer Protein Complexed With 3-O-Sulfo
Galactosylceramide Containing Nervonoyl Acyl Chain
Length = 209
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 22 EMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGE 80
++ T PFLE + P D G+ + + +K+ I GNIT+++ Y ++P K++ L +++
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKAVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 81 EVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL------AHPDWTMPQVCTDSYSKT 133
E E A+ T L+WL R + F+ +++ HP+ T +Y
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVN-ATKAYEMA 135
Query: 134 LKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 172
LKK+HGWI F A+ AP + F++ + +V +
Sbjct: 136 LKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174
>pdb|3RIC|A Chain A, Crystal Structure Of D48v||a47d Mutant Of Human Glycolipid
Transfer Protein Complexed With
3-O-Sulfo-Galactosylceramide Containing Nervonoyl Acyl
Chain (24:1)
Length = 209
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 22 EMLTKPFLEVCKLILPVLDKFGAAM-SLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGE 80
++ T PFLE + P D G+ + + +K I GNIT+++ Y ++P K++ L +++
Sbjct: 17 QIETGPFLEAVSHLPPFFDCLGSPVFTPIKDVISGNITKIKAVYDTNPAKFRTLQNILEV 76
Query: 81 EVEAKTAKRSS-SCTNGLLWLTRAMDFLVELFRNLL------AHPDWTMPQVCTDSYSKT 133
E E A+ T L+WL R + F+ +++ HP+ T +Y
Sbjct: 77 EKEMYGAEWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVN-ATKAYEMA 135
Query: 134 LKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGDVNSD 172
LKK+HGWI F A+ AP + F++ + +V +
Sbjct: 136 LKKYHGWIVQKIFQAALYAAPYKSDFLKALSKGQNVTEE 174
>pdb|3KV0|A Chain A, Crystal Structure Of Het-C2: A Fungal Glycolipid Transfer
Pr (Gltp)
Length = 209
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 84/182 (46%), Gaps = 10/182 (5%)
Query: 16 VKSEQGEML-TKPFLEVCKLILPVLDKFGA-AMSLVKSDIGGNITRLENKYLSDPEKYKN 73
+ +E G + T FLE + + + D G+ A S V +D+ GN+ + + L+ P + +N
Sbjct: 29 IDAEXGNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQN 88
Query: 74 LYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFL-VELFRNLLAHPDWTMPQVCTDSYSK 132
+ +V E+ S + T GLLWL R ++F + L N+ + + + SY
Sbjct: 89 IQDLVRNEL----XTXSHTATEGLLWLVRGLEFTCIALSXNIGSTEE--LADSFRGSYRV 142
Query: 133 TLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSGD-VNSDMDKFCTAFAPLLEENHKFL 191
TL H ++ F+ AM P R F +G V ++ ++ A ++ +FL
Sbjct: 143 TLXPHHSFLVXPIFSAAMSACPYRXDFYAXLGDDEQXVQEELREYLVALDXIVNILXRFL 202
Query: 192 AS 193
S
Sbjct: 203 ES 204
>pdb|4E9J|A Chain A, Crystal Structure Of The N-terminal Domain Of The Secretin
Xcpq From Pseudomonas Aeruginosa
pdb|4E9J|B Chain B, Crystal Structure Of The N-terminal Domain Of The Secretin
Xcpq From Pseudomonas Aeruginosa
Length = 246
Score = 30.4 bits (67), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 22 EMLTKPFLEVCKLILPVLDKFG------AAMSLVKSDIGGNITRLENKYLSDPEKYKNLY 75
++ P E+ LI P++ ++G +A +L+ SD NI R+E+ +K + Y
Sbjct: 119 QVQQSPVSELIPLIRPLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDY 178
Query: 76 SMV 78
S++
Sbjct: 179 SVI 181
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 169 VNSDMDKFCTAFAPLLEENHKFLA 192
+ S+MDK AF +LE NH FLA
Sbjct: 269 IGSNMDKVEAAFNFVLENNHAFLA 292
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 169 VNSDMDKFCTAFAPLLEENHKFLA 192
+ S+MDK AF +LE NH FLA
Sbjct: 268 IGSNMDKVEAAFNFVLENNHAFLA 291
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 59 RLENKYLSDPEKYKNLYSMVGEEV 82
+L K++ PEK NL++ + EEV
Sbjct: 1123 KLRQKFVGTPEKVVNLFTFLAEEV 1146
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 27.3 bits (59), Expect = 5.3, Method: Composition-based stats.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 59 RLENKYLSDPEKYKNLYSMVGEEV 82
+L K++ PEK NL++ + EEV
Sbjct: 1123 KLRQKFVGTPEKVVNLFTFLAEEV 1146
>pdb|1RW0|A Chain A, Crystal Structure Of Protein Yfih From Salmonella Enterica
Serovar Typhi, Pfam Duf152
pdb|1RW0|B Chain B, Crystal Structure Of Protein Yfih From Salmonella Enterica
Serovar Typhi, Pfam Duf152
Length = 243
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 52/137 (37%), Gaps = 29/137 (21%)
Query: 72 KNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRN------LLAHPDWTMPQV 125
KN+ + GE +K A S S T G + D L LF N AH W +
Sbjct: 73 KNVLRLTGEPYASKRADASYSNTPGTVCAVMTADCLPVLFCNREGTEVAAAHAGWR--GL 130
Query: 126 CTDSYSKTLKKFH-------GWIASSSFTVAMKLAPD-RKKFMEVIGGSGDVNSDMDKFC 177
C +T+ F W+ + A ++ P+ R F+ + D +D
Sbjct: 131 CEGVLEETVTCFADKPENIIAWLGPAIGPAAFEVGPEVRDAFL-----AKDAQAD----- 180
Query: 178 TAFAPLLEENHKFLASV 194
+AF P KFLA +
Sbjct: 181 SAFLP---HGEKFLADI 194
>pdb|2R4G|A Chain A, The High Resolution Structure Of The Rna-Binding Domain Of
Telomerase
Length = 267
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 48 LVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTN 95
+V++ N L K+ PE Y++L S V + V+++ SC N
Sbjct: 62 IVQNFHNINFNYLLKKFCKLPENYQSLKSQVKQIVQSENKANQQSCEN 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,947,573
Number of Sequences: 62578
Number of extensions: 222529
Number of successful extensions: 535
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 19
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)