Query 045817
Match_columns 202
No_of_seqs 107 out of 424
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045817.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045817hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3221 Glycolipid transfer pr 100.0 1.5E-53 3.4E-58 345.7 18.3 191 10-201 5-199 (199)
2 PF08718 GLTP: Glycolipid tran 100.0 1.5E-51 3.3E-56 327.5 13.7 146 21-166 1-148 (149)
3 KOG4189 Uncharacterized conser 100.0 1.1E-45 2.4E-50 299.1 18.1 183 16-199 24-208 (209)
4 PRK14150 heat shock protein Gr 57.9 52 0.0011 27.2 7.1 56 144-199 86-141 (193)
5 COG4974 XerD Site-specific rec 45.8 37 0.00081 30.2 4.6 79 105-185 7-86 (300)
6 PRK14151 heat shock protein Gr 44.9 76 0.0016 25.9 6.0 55 145-199 69-123 (176)
7 PF09409 PUB: PUB domain; Int 44.4 47 0.001 23.4 4.2 40 100-139 6-48 (87)
8 PRK14154 heat shock protein Gr 42.1 79 0.0017 26.6 5.8 56 144-199 100-155 (208)
9 COG0598 CorA Mg2+ and Co2+ tra 40.1 2.6E+02 0.0056 24.6 10.9 78 28-119 134-211 (322)
10 PF08657 DASH_Spc34: DASH comp 39.3 61 0.0013 28.1 4.9 52 21-81 155-206 (259)
11 PF11553 DUF3231: Protein of u 38.0 66 0.0014 25.4 4.6 36 165-200 44-79 (166)
12 TIGR01881 cas_Cmr5 CRISPR-asso 34.8 75 0.0016 24.5 4.3 42 10-52 9-52 (127)
13 PF13496 DUF4120: Domain of un 32.6 12 0.00026 27.2 -0.4 12 131-142 82-93 (95)
14 COG3078 Uncharacterized protei 31.8 1E+02 0.0023 24.7 4.6 38 158-198 112-149 (169)
15 PRK14148 heat shock protein Gr 31.3 1.6E+02 0.0035 24.4 6.0 55 144-199 88-142 (195)
16 PF14516 AAA_35: AAA-like doma 29.9 2.2E+02 0.0048 25.1 7.0 53 126-180 222-275 (331)
17 PRK10325 heat shock protein Gr 29.6 1.8E+02 0.004 24.1 6.0 55 145-199 88-142 (197)
18 PRK14145 heat shock protein Gr 27.9 1.6E+02 0.0035 24.5 5.4 52 144-199 93-144 (196)
19 PRK14162 heat shock protein Gr 27.0 2.1E+02 0.0045 23.8 5.9 54 145-199 88-141 (194)
20 PRK14155 heat shock protein Gr 26.9 2.4E+02 0.0053 23.6 6.4 55 145-199 62-118 (208)
21 PRK14139 heat shock protein Gr 26.8 2.3E+02 0.0051 23.3 6.1 51 146-199 82-132 (185)
22 COG0576 GrpE Molecular chapero 26.2 1.3E+02 0.0028 24.8 4.5 55 146-201 86-141 (193)
23 KOG2427 Uncharacterized conser 25.9 47 0.001 30.6 2.0 67 134-200 133-210 (391)
24 PRK14147 heat shock protein Gr 25.8 2.2E+02 0.0048 23.0 5.8 52 145-199 67-118 (172)
25 PF13959 DUF4217: Domain of un 25.3 52 0.0011 22.1 1.7 40 108-148 3-43 (65)
26 KOG3926 F-box proteins [Amino 25.2 1.1E+02 0.0025 27.1 4.2 37 100-136 92-128 (332)
27 PRK14161 heat shock protein Gr 24.8 2.5E+02 0.0053 23.0 5.9 55 145-199 68-123 (178)
28 KOG2986 Uncharacterized conser 24.8 1.4E+02 0.0031 26.4 4.6 52 142-193 155-216 (313)
29 PF02899 Phage_int_SAM_1: Phag 24.1 1.1E+02 0.0024 20.4 3.3 37 105-144 47-83 (84)
30 PRK14141 heat shock protein Gr 23.9 2.5E+02 0.0053 23.6 5.8 57 144-200 79-140 (209)
31 PF08314 Sec39: Secretory path 23.6 3.5E+02 0.0075 26.6 7.7 123 25-157 516-655 (715)
32 PRK14160 heat shock protein Gr 23.5 2.3E+02 0.005 23.9 5.6 69 127-199 81-160 (211)
33 PF09373 PMBR: Pseudomurein-bi 23.5 1.3E+02 0.0028 17.4 3.0 26 20-45 2-27 (33)
34 PRK14153 heat shock protein Gr 22.7 2.7E+02 0.0058 23.1 5.8 54 145-199 82-135 (194)
35 cd00446 GrpE GrpE is the adeni 22.5 2.1E+02 0.0046 21.8 4.9 54 145-199 34-87 (137)
36 PRK14149 heat shock protein Gr 22.3 2.5E+02 0.0054 23.3 5.5 55 144-199 84-138 (191)
37 PF06070 Herpes_UL32: Herpesvi 22.2 2.5E+02 0.0055 28.5 6.4 75 97-187 5-91 (839)
38 PRK14143 heat shock protein Gr 22.2 2.4E+02 0.0053 24.1 5.6 56 145-200 116-171 (238)
39 PRK14146 heat shock protein Gr 22.1 2.8E+02 0.0061 23.3 5.9 56 144-200 102-157 (215)
40 KOG2888 Putative RNA binding p 21.9 85 0.0018 28.6 2.8 57 4-62 176-238 (453)
41 PF04424 DUF544: Protein of un 21.4 28 0.00061 26.5 -0.3 10 134-143 87-96 (121)
42 KOG2875 8-oxoguanine DNA glyco 21.3 2.3E+02 0.0051 25.2 5.3 68 42-119 118-200 (323)
43 PRK14159 heat shock protein Gr 21.2 3.4E+02 0.0074 22.1 6.1 56 144-200 71-126 (176)
44 PF08989 DUF1896: Domain of un 20.8 1.9E+02 0.0042 22.9 4.3 72 123-199 37-117 (144)
45 PRK10626 hypothetical protein; 20.7 4.2E+02 0.009 22.8 6.7 60 124-187 70-134 (239)
46 PF14493 HTH_40: Helix-turn-he 20.4 58 0.0012 23.1 1.2 47 7-53 28-77 (91)
No 1
>KOG3221 consensus Glycolipid transfer protein [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-53 Score=345.67 Aligned_cols=191 Identities=41% Similarity=0.722 Sum_probs=181.8
Q ss_pred HHhccccccCCCCcChHHHHHHHHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCC
Q 045817 10 LEGMKHVKSEQGEMLTKPFLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKR 89 (202)
Q Consensus 10 ~~~f~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~ 89 (202)
.+.|....+++++|+|.+||+||.+|+||+|+||++|+||++||+|||++++++|.+++++++||+.+|+.|++..+.+
T Consensus 5 ~e~~~~~l~~d~~i~T~~FL~ac~~i~pvid~lG~~ftpVk~Di~gNI~kv~~~y~~d~~k~~~Lq~~i~~eie~~~a~- 83 (199)
T KOG3221|consen 5 LEHFLKPLPDDGKIETGPFLEACKHIVPVIDKLGAVFTPVKSDISGNITKVKKVYDTDKEKFKYLQKIVKVEIETDIAE- 83 (199)
T ss_pred cccCCCCCCcccCCccHHHHHHHhhhhhHHHHhhhhhHhHHHHhhccHHHHHHHHhcChHHHHHHHHHHHHHHHHhhcc-
Confidence 4567777888999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHHHHHhcCC---
Q 045817 90 SSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGS--- 166 (202)
Q Consensus 90 ~~s~sr~LLwL~R~L~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~--- 166 (202)
.+|||++||||+|||+|++.||++|..+.+++++.++.+||+.||+|||||++|++|++|++++|+|++|++.++.+
T Consensus 84 ~~sat~aLLWLkRgldF~~~~l~~l~~~~~~~l~~av~daY~kTLK~~HGwI~q~~FkvaLklvP~r~~Fl~als~~d~t 163 (199)
T KOG3221|consen 84 KVSATLALLWLKRGLDFTLAFLQELVNGESDCLIQAVADAYEKTLKKYHGWIVQSTFKVALKLVPDRKTFLKALSAGDET 163 (199)
T ss_pred cchhhHHHHHHHhHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCcHHHHHHHHhcccch
Confidence 89999999999999999999999999998878999999999999999999999999999999999999999999732
Q ss_pred -CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 045817 167 -GDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLKA 201 (202)
Q Consensus 167 -~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~~ 201 (202)
+...++|+.++..++|+++.|..+|+++|++++|+
T Consensus 164 ~~~~~edi~~fl~~~~~~L~~i~~~l~~~~ld~~~~ 199 (199)
T KOG3221|consen 164 YDECIEDITSFLSLLTPILKEIYFVLEQYGLDDLRS 199 (199)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhccccccC
Confidence 34788999999999999999999999999999985
No 2
>PF08718 GLTP: Glycolipid transfer protein (GLTP); InterPro: IPR014830 Glycolipid transfer protein (GLTP) is a cytosolic protein that catalyses the intermembrane transfer of glycolipids such as glycosphingolipids, glyceroglycolipids, and possibly glucosylceramides, but not of phospholipids. The GLTP protein consists of a single domain with a multi-helical structure consisting of two layers of orthogonally packed helices [, ]. The GLTP domain is also found in trans-Golgi network proteins involved in Golgi-to-cell-surface membrane traffic [].; GO: 0017089 glycolipid transporter activity, 0051861 glycolipid binding, 0046836 glycolipid transport, 0005737 cytoplasm; PDB: 2BV7_A 1TFJ_A 1WBE_A 3KV0_A 3RWV_B 2EVD_A 2EUK_A 3RZN_A 2EVL_A 3S0K_A ....
Probab=100.00 E-value=1.5e-51 Score=327.50 Aligned_cols=146 Identities=44% Similarity=0.822 Sum_probs=136.4
Q ss_pred CCcChHHHHHHHHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHh-hcCchhhhhHHHHHHHHHHhcCCCCCCccchhHHH
Q 045817 21 GEMLTKPFLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKY-LSDPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLW 99 (202)
Q Consensus 21 ~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~-~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLw 99 (202)
++|+|++||++|++|++|||+||++|+||++||.+||++|++++ +.+|++|.||++||++|+++|.+++.+||+|+|||
T Consensus 1 n~i~~~~fl~a~~~l~~~~~~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~s~~LLw 80 (149)
T PF08718_consen 1 NDIDTEPFLEACRELVKFFDKLGTVFSFVKSDVQGNIKKLRKAYQEEDPEKYKTLESMVDYEVENGTHKKKGSGSRTLLW 80 (149)
T ss_dssp SEEBHHHHHHHHTTSHHHHCCSSGGGHHHHHHHHHHHHHHHHHH-HHSTTTTSBHHHHHHHHHHHHGGGTSSHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCChhhhccHHHHHHHHHHHhcccccccHHHHHHH
Confidence 47999999999999999999999999999999999999999999 78999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHHHHHhcCC
Q 045817 100 LTRAMDFLVELFRNLLAHPDW-TMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGS 166 (202)
Q Consensus 100 L~R~L~Fi~~~l~~l~~~~~~-~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 166 (202)
|||||+|++.||+++.+++++ +++.+|++||++||+|||||+||++|++||+++|+|++|+++++++
T Consensus 81 L~RaL~Fi~~~l~~l~~~~~~~~~~~~~~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~ 148 (149)
T PF08718_consen 81 LHRALEFIVAFLENLLESPDDEKLSDAAREAYDKTLAPYHGWIVRKAFKLALKALPSRSDFLKKLGGN 148 (149)
T ss_dssp HHHHHHHHHHHHHHHHTS--BTBHHHHHHHHHHHHTGGGB-HHHHHHHHHHHHT--BHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHhCC
Confidence 999999999999999998776 5999999999999999999999999999999999999999999875
No 3
>KOG4189 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.1e-45 Score=299.08 Aligned_cols=183 Identities=26% Similarity=0.422 Sum_probs=163.5
Q ss_pred cccCCCCcChHHHHHHHHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCCCCccch
Q 045817 16 VKSEQGEMLTKPFLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTN 95 (202)
Q Consensus 16 ~~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr 95 (202)
+..++++|++++|+.||+++++||++||++|+||.+|+..||++|.+...+||+.|.|+-++...|...++. ++.||+|
T Consensus 24 v~~e~~eV~L~~f~~a~e~v~~~f~~lG~iF~Fve~Dv~aKid~L~~l~ssd~et~rtild~~~e~~~~~~~-G~~Sgtr 102 (209)
T KOG4189|consen 24 VIEEDNEVDLDQFLLAYEEVCKFFGCLGTIFSFVEKDVRAKIDDLVELRSSDPETYRTILDLDTEESEVGTI-GNQSGTR 102 (209)
T ss_pred hcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhHhccc-Cccccch
Confidence 345666799999999999999999999999999999999999999999998988766655555544444432 3459999
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCC-ChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHHHHHhcCCC-chHHHH
Q 045817 96 GLLWLTRAMDFLVELFRNLLAHPDW-TMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGGSG-DVNSDM 173 (202)
Q Consensus 96 ~LLwL~R~L~Fi~~~l~~l~~~~~~-~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~~~-~~~~~~ 173 (202)
+||+|+|||+|+..||+++.+++++ +++++|++||++||+|||||+||+++++||+++|+|.+|+..++++. +++..|
T Consensus 103 ~Llrl~R~LefV~efl~~i~as~nD~s~~diakesYd~~lakhHsW~IRtAV~~amYtLPTR~~lL~~Lk~d~~~~~~~~ 182 (209)
T KOG4189|consen 103 NLLRLNRALEFVIEFLDQIFASTNDESLKDIAKESYDKTLAKHHSWAIRTAVAAAMYTLPTRPELLCRLKEDMDAANQNM 182 (209)
T ss_pred HHHHHHhhHHHHHHHHHHHHcCCCcchhhHHHHHHHHHhhhccccHHHHHHHHHHHHhCCCcHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999998665 99999999999999999999999999999999999999999999874 588999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 174 DKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 174 ~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
+.+....+|++.+++.+|+.++|.+.
T Consensus 183 ~~~~~~~r~ii~~~~~l~~~~~l~~~ 208 (209)
T KOG4189|consen 183 QSYNRDSRPIIRRVDKLYELFELTDD 208 (209)
T ss_pred HHHHHccChHHHHHhHHHHHhccccC
Confidence 99999999999999999999988764
No 4
>PRK14150 heat shock protein GrpE; Provisional
Probab=57.93 E-value=52 Score=27.20 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=44.3
Q ss_pred HHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
..-+++-.++|-..+|=+.+.....-...+..++..+.-++..+...|+++|+...
T Consensus 86 a~~~~~~~lL~v~DnlerAl~~~~~~~~~~~~~~~Gv~mi~~~l~~~L~~~Gv~~i 141 (193)
T PRK14150 86 ALEKFANELLPVIDNLERALQAADKENEALKALIEGVELTLKSLLDTVAKFGVEVV 141 (193)
T ss_pred HHHHHHHHHHhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCeee
Confidence 55677888999999998888532111235688999999999999999999999754
No 5
>COG4974 XerD Site-specific recombinase XerD [DNA replication, recombination, and repair]
Probab=45.78 E-value=37 Score=30.16 Aligned_cols=79 Identities=13% Similarity=0.337 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhhhcchhhHHHH-HHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHH
Q 045817 105 DFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSF-TVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPL 183 (202)
Q Consensus 105 ~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w~vr~~~-~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~ 183 (202)
.+|..|++.+.... .++.-.-.||...|..|..|+-++.. .++--..++-..|+..+..++=...-..+.+++++..
T Consensus 7 ~~i~~fL~~l~~Er--~ls~nTl~sYrrDL~~f~~~L~~~~~~~l~~~~~~di~~yl~~l~~~g~s~~S~aR~lsalR~f 84 (300)
T COG4974 7 ALIEQFLEYLWIER--GLSANTLSSYRRDLEDFREWLEERGITDLADATEADIREYLTELAEQGLSATSIARALSALRSF 84 (300)
T ss_pred HHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHHHHHHHhcCCCChhhcCHHHHHHHHHHHHhCCcChhhHHHHHHHHHHH
Confidence 45666776666533 46777789999999999999998864 5666666677778888766542223344555555554
Q ss_pred HH
Q 045817 184 LE 185 (202)
Q Consensus 184 ~~ 185 (202)
+.
T Consensus 85 y~ 86 (300)
T COG4974 85 YQ 86 (300)
T ss_pred HH
Confidence 43
No 6
>PRK14151 heat shock protein GrpE; Provisional
Probab=44.92 E-value=76 Score=25.89 Aligned_cols=55 Identities=11% Similarity=0.018 Sum_probs=42.6
Q ss_pred HHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
.-+++...+|-..+|=+.+.....-...+..++..+.-++..+.+.|+++|+...
T Consensus 69 ~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~Gv~mi~k~l~~~L~k~Gv~~i 123 (176)
T PRK14151 69 LEKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELTLKMFQDTLKRYQLEAV 123 (176)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 4466778899999998888632111235688999999999999999999999754
No 7
>PF09409 PUB: PUB domain; InterPro: IPR018997 The PUB (also known as PUG) domain is found in peptide N-glycanase where it functions as a AAA ATPase binding domain []. This domain is also found on other proteins linked to the ubiquitin-proteasome system. ; PDB: 2CM0_A 2CCQ_A 2D5U_A 2HPL_A 2HPJ_A.
Probab=44.40 E-value=47 Score=23.37 Aligned_cols=40 Identities=15% Similarity=0.450 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCC-Chh--hHHHHHHHHHhhhhcc
Q 045817 100 LTRAMDFLVELFRNLLAHPDW-TMP--QVCTDSYSKTLKKFHG 139 (202)
Q Consensus 100 L~R~L~Fi~~~l~~l~~~~~~-~~~--~~a~~AY~~tL~~yH~ 139 (202)
..++++.+...+.++..+|++ +.+ .....++.+.+.+++|
T Consensus 6 ~~~al~~L~~il~NI~~~P~~~kyR~Ir~~N~~f~~~i~~~~g 48 (87)
T PF09409_consen 6 FQKALETLEKILSNILSNPNEEKYRRIRLSNKTFQEKILPVPG 48 (87)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CGGGEEETTSHHHHHHTTTSTT
T ss_pred HHHHHHHHHHHHHHHccCCCcccceEeecCcchHHHHhcCChh
Confidence 468899999999999999875 333 4466889899999988
No 8
>PRK14154 heat shock protein GrpE; Provisional
Probab=42.09 E-value=79 Score=26.60 Aligned_cols=56 Identities=14% Similarity=0.210 Sum_probs=44.0
Q ss_pred HHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
...+++-.++|-..+|-+.+....+-...+..+...+.-+++.+...|+++|+...
T Consensus 100 a~e~~~~~LLpVlDnLeRAL~~~~~~~~~~~~l~eGvemi~k~l~~vL~k~GVe~I 155 (208)
T PRK14154 100 GSKQLITDLLPVADSLIHGLESPASEDPQVKSMRDGMSLTLDLLHNTLAKHGVQVI 155 (208)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 35567788999999999988632111235678899999999999999999999754
No 9
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=40.05 E-value=2.6e+02 Score=24.55 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHH
Q 045817 28 FLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFL 107 (202)
Q Consensus 28 fl~a~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLwL~R~L~Fi 107 (202)
...+..-+..++|.+-..+.++-..+...++.|++.....+.. ..++.+...+ +.+..++|+|.=.
T Consensus 134 ~~~~~~l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~-~~l~~l~~l~-------------~~l~~lr~~l~~~ 199 (322)
T COG0598 134 TRGADELLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTN-EELERLGELR-------------RSLVYLRRALAPL 199 (322)
T ss_pred cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccH-HHHHHHHHHH-------------HHHHHHHHHHHhH
Confidence 3445566677888888899999999999999999887765544 4555555444 5688888888888
Q ss_pred HHHHHHhhcCCC
Q 045817 108 VELFRNLLAHPD 119 (202)
Q Consensus 108 ~~~l~~l~~~~~ 119 (202)
...+..+..++.
T Consensus 200 ~~~l~~l~~~~~ 211 (322)
T COG0598 200 RDVLLRLARRPL 211 (322)
T ss_pred HHHHHHHHhcCc
Confidence 888888877653
No 10
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=39.33 E-value=61 Score=28.11 Aligned_cols=52 Identities=15% Similarity=0.120 Sum_probs=39.4
Q ss_pred CCcChHHHHHHHHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHH
Q 045817 21 GEMLTKPFLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEE 81 (202)
Q Consensus 21 ~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E 81 (202)
++++++-+|++...||.+|-.. .+..+|..|+..|..-...-..+++-|...
T Consensus 155 ~d~dvevLL~~ae~L~~vYP~~---------ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ 206 (259)
T PF08657_consen 155 EDVDVEVLLRGAEKLCNVYPLP---------GAREKIAALRQRYNQLSNSIAYLEAEVAEQ 206 (259)
T ss_pred ccCCHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999988665 567788888888876555555566655443
No 11
>PF11553 DUF3231: Protein of unknown function (DUF3231); InterPro: IPR021617 This bacterial family of proteins has no known function. ; PDB: 2RBD_B.
Probab=38.02 E-value=66 Score=25.36 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=27.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 165 GSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
.+.|++..|++..+.+.+.++.+.++++++|+.-|.
T Consensus 44 ~D~dik~~l~~~~~~~~~~i~~l~~ll~~e~ip~P~ 79 (166)
T PF11553_consen 44 EDKDIKKLLKKGLDLSQKQIEQLEKLLKEEGIPVPP 79 (166)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 456789999999999999999999999999997553
No 12
>TIGR01881 cas_Cmr5 CRISPR-associated protein, Cmr5 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.
Probab=34.81 E-value=75 Score=24.49 Aligned_cols=42 Identities=5% Similarity=0.154 Sum_probs=26.1
Q ss_pred HHhccccccCCCCcChHHHHHHHHHHHHHHHh--hcchhHHHHHh
Q 045817 10 LEGMKHVKSEQGEMLTKPFLEVCKLILPVLDK--FGAAMSLVKSD 52 (202)
Q Consensus 10 ~~~f~~~~~~~~~i~~~~fl~a~~~l~~~~d~--lG~~f~~v~~D 52 (202)
++.+.++.. .++=....|-.-|+.+...+-. ||.+++|+.+-
T Consensus 9 ~~~v~~v~~-~~~~~~~~y~s~~~~lp~~I~~nGL~~alaf~~sK 52 (127)
T TIGR01881 9 IKVVEEVEK-SDKQFREKYRSRVRKLPSMILNNGLIPTLAFYLSK 52 (127)
T ss_pred HHHHHHHHh-cChHHHHHHHHHHHHhHHHHHHcCHHHHHHHHHHc
Confidence 344444443 2222347888999998888777 45667776654
No 13
>PF13496 DUF4120: Domain of unknown function (DUF4120)
Probab=32.64 E-value=12 Score=27.19 Aligned_cols=12 Identities=42% Similarity=0.897 Sum_probs=9.8
Q ss_pred HHHhhhhcchhh
Q 045817 131 SKTLKKFHGWIA 142 (202)
Q Consensus 131 ~~tL~~yH~w~v 142 (202)
.-++.|+|||.+
T Consensus 82 av~~~pfhgw~i 93 (95)
T PF13496_consen 82 AVMLGPFHGWSI 93 (95)
T ss_pred EEEecCcccccc
Confidence 357899999976
No 14
>COG3078 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.79 E-value=1e+02 Score=24.70 Aligned_cols=38 Identities=8% Similarity=0.331 Sum_probs=28.4
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 045817 158 KFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDD 198 (202)
Q Consensus 158 ~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~ 198 (202)
.++..|..++.+.+..+.|+++ .+++|..+.++.||.+
T Consensus 112 ~LLdrLdagetLs~edQ~~VD~---~LDRI~~LMe~LGl~~ 149 (169)
T COG3078 112 ALLDRLDAGETLSAEDQQWVDA---KLDRIDELMEKLGLSY 149 (169)
T ss_pred HHHHHhhccCcccHHHHHHHHH---HHHHHHHHHHHhCCcc
Confidence 3445554455567778888864 7999999999999964
No 15
>PRK14148 heat shock protein GrpE; Provisional
Probab=31.32 E-value=1.6e+02 Score=24.43 Aligned_cols=55 Identities=11% Similarity=0.042 Sum_probs=43.7
Q ss_pred HHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
...+++-.++|-..+|-+.+....+ ......++..++-++..+...|+++|+...
T Consensus 88 a~~~~~~~LLpV~DnlerAl~~~~~-~~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I 142 (195)
T PRK14148 88 GIEKFAKELLPVIDSIEQALKHEVK-LEEAIAMKEGIELTAKMLVDILKKNGVEEL 142 (195)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 3456778899999999999864321 124678999999999999999999999744
No 16
>PF14516 AAA_35: AAA-like domain
Probab=29.90 E-value=2.2e+02 Score=25.12 Aligned_cols=53 Identities=11% Similarity=0.116 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHHHHHhcC-CCchHHHHHHHHHHH
Q 045817 126 CTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIGG-SGDVNSDMDKFCTAF 180 (202)
Q Consensus 126 a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~~-~~~~~~~~~~~~~~l 180 (202)
..+-|+-| .=|||+||+++......--+-+++++.-.. .+....+++.....+
T Consensus 222 ~~~l~~~t--gGhP~Lv~~~~~~l~~~~~~~~~l~~~a~~~~~~~~~hL~~l~~~L 275 (331)
T PF14516_consen 222 LEQLMDWT--GGHPYLVQKACYLLVEEQITLEQLLEEAITDNGIYNDHLDRLLDRL 275 (331)
T ss_pred HHHHHHHH--CCCHHHHHHHHHHHHHccCcHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44444444 339999999999998866666777666542 234445565555554
No 17
>PRK10325 heat shock protein GrpE; Provisional
Probab=29.65 E-value=1.8e+02 Score=24.06 Aligned_cols=55 Identities=13% Similarity=0.153 Sum_probs=42.7
Q ss_pred HHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
..+++-.++|--.+|=+.+.....-......+...++-+++.+...|.++|+...
T Consensus 88 ~~~~~~~lLpv~DnlerAl~~~~~~~~~~~~l~~Gv~m~~~~l~~~L~~~Gv~~i 142 (197)
T PRK10325 88 LEKFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSMLDVVRKFGVEVI 142 (197)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCcCeee
Confidence 4567778999999998888532111134678899999999999999999999754
No 18
>PRK14145 heat shock protein GrpE; Provisional
Probab=27.88 E-value=1.6e+02 Score=24.47 Aligned_cols=52 Identities=19% Similarity=0.374 Sum_probs=42.2
Q ss_pred HHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
.+-+++..++|-..+|-+.+...+ +...+...+..+++.+...|+++|+...
T Consensus 93 a~e~~~~~LLpV~DnLerAl~~~~----~~~~l~~Gv~mi~k~l~~vL~k~GVe~I 144 (196)
T PRK14145 93 GKEQVILELLPVMDNFERALASSG----DYNSLKEGIELIYRQFKKILDKFGVKEI 144 (196)
T ss_pred HHHHHHHHHHhHHhHHHHHHhccc----cHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 455678889999999999986543 2456778999999999999999999743
No 19
>PRK14162 heat shock protein GrpE; Provisional
Probab=26.97 E-value=2.1e+02 Score=23.80 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=42.7
Q ss_pred HHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
+.+++-.++|-..+|=+.+....+ ...+..++..+.-++..+...|+++|+...
T Consensus 88 ~~~~~~~LLpV~DnLerAl~~~~~-~~~~~~l~~Gvemi~k~l~~vL~~~GV~~I 141 (194)
T PRK14162 88 SQSLAKDVLPAMDNLERALAVKAD-DEAAKQLKKGVQMTLDHLVKALKDHGVTEI 141 (194)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccc-chhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 556778899999999888864211 134678999999999999999999999744
No 20
>PRK14155 heat shock protein GrpE; Provisional
Probab=26.91 E-value=2.4e+02 Score=23.61 Aligned_cols=55 Identities=11% Similarity=0.082 Sum_probs=43.6
Q ss_pred HHHHHhhhCCChHHHHHHhcCCC--chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSG--DVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
+-+++-.++|-..+|-+.+.... .....+..++..++-+++.+...|+++|+...
T Consensus 62 ~~~~~~~LLpV~DnLerAl~~~~~~~~~~~~~~i~~Gvemi~k~~~~~L~k~GV~~I 118 (208)
T PRK14155 62 IQKFARDLLGAADNLGRATAASPKDSADPAVKNFIIGVEMTEKELLGAFERNGLKKI 118 (208)
T ss_pred HHHHHHHHhhHHhhHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHHHHCCCcee
Confidence 44667788999999999886421 12245788999999999999999999999754
No 21
>PRK14139 heat shock protein GrpE; Provisional
Probab=26.81 E-value=2.3e+02 Score=23.28 Aligned_cols=51 Identities=12% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 146 FTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 146 ~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
-+++-.++|-..+|-+.+.... ..+..+...++-++..+...|+++|+...
T Consensus 82 ~~~~~~LLpv~DnLerAl~~~~---~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I 132 (185)
T PRK14139 82 ESFAESLLPVKDSLEAALADES---GDLEKLREGVELTLKQLTSAFEKGRVVEI 132 (185)
T ss_pred HHHHHHHhhHHhHHHHHHhccc---chHHHHHHHHHHHHHHHHHHHHHCCCcee
Confidence 3556678999999988885432 24577889999999999999999999754
No 22
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones]
Probab=26.17 E-value=1.3e+02 Score=24.84 Aligned_cols=55 Identities=13% Similarity=0.228 Sum_probs=42.9
Q ss_pred HHHHhhhCCChHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 045817 146 FTVAMKLAPDRKKFMEVIGGS-GDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLKA 201 (202)
Q Consensus 146 ~~~a~~~~P~R~~fl~~l~~~-~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~~ 201 (202)
-+++...+|....|-+.|... ++-... ..++..+.-+++.+...|.++|+....+
T Consensus 86 e~~~~dlLpviDnlerAl~~~~~~~d~~-~~l~~Gvem~~~~l~~~L~k~Gv~~i~~ 141 (193)
T COG0576 86 EKFAKDLLPVIDNLERALEAAEDDKDPE-KALLEGVEMTLDQLLDALEKLGVEEIGP 141 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHHHHHHHCCCEEeCC
Confidence 456778999999999998652 221122 6788999999999999999999987654
No 23
>KOG2427 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.87 E-value=47 Score=30.60 Aligned_cols=67 Identities=18% Similarity=0.363 Sum_probs=37.0
Q ss_pred hhhhcchhhHHHHHHHhhhC--CChH-------HHHHHhcCCC--chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 134 LKKFHGWIASSSFTVAMKLA--PDRK-------KFMEVIGGSG--DVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 134 L~~yH~w~vr~~~~~a~~~~--P~R~-------~fl~~l~~~~--~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
+.=||||+|-.=..-+..++ +++. +...+.+... +=..++...+.-..-.++.--..++.+||.+++
T Consensus 133 V~LyHGWlvDpq~~e~~~ai~~~Syn~~~~~~tq~ve~~~~~~~~E~s~~i~s~~~~~~~f~~~s~tqlt~~Gl~~l~ 210 (391)
T KOG2427|consen 133 VPLYHGWLVDPQDVEIVDAIGNRSYNELETLLTQLVEKQCGCASTENSEDVLSDCLMLESFLDESATQLTEHGLLRLR 210 (391)
T ss_pred CcceeeeecCCccHHHHHHhcccchhhhhhhHHHHHHHhcccccchhhhhhhhHHHHHHHhhccchHHHHHhhhhhhh
Confidence 45699999976554444444 5555 5555555431 111124444444555555556666667766544
No 24
>PRK14147 heat shock protein GrpE; Provisional
Probab=25.76 E-value=2.2e+02 Score=23.03 Aligned_cols=52 Identities=13% Similarity=0.098 Sum_probs=41.2
Q ss_pred HHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
.-+++-..+|-..+|=+.+....+ ....+...+.-++..+...|+++|+...
T Consensus 67 ~~~~~~~lLpv~DnlerAl~~~~~---~~~~l~~Gv~mi~k~l~~~L~~~Gv~~i 118 (172)
T PRK14147 67 NEKLLGELLPVFDSLDAGLTAAGT---EPSPLRDGLELTYKQLLKVAADNGLTLL 118 (172)
T ss_pred HHHHHHHHhhhhhHHHHHHhcccc---hHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 356777889999999888864321 2467888999999999999999999754
No 25
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=25.34 E-value=52 Score=22.11 Aligned_cols=40 Identities=13% Similarity=0.310 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCChhhHHHHHHHHHhhhhcch-hhHHHHHH
Q 045817 108 VELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGW-IASSSFTV 148 (202)
Q Consensus 108 ~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w-~vr~~~~~ 148 (202)
+.-++.++.. +..+...|++||-.-++-|+.. -.|.+|.+
T Consensus 3 q~~l~~~~~~-d~~l~~lA~~Af~SyvraY~~~~~~k~iF~~ 43 (65)
T PF13959_consen 3 QQKLEKLVAK-DRELKELAQKAFVSYVRAYASHKELKDIFNV 43 (65)
T ss_pred HHHHHHHHHh-CHHHHHHHHHHHHHHHHHHHHHhhhhhhCCc
Confidence 3445555543 2368899999999999999887 66766654
No 26
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=25.19 E-value=1.1e+02 Score=27.08 Aligned_cols=37 Identities=11% Similarity=0.197 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhh
Q 045817 100 LTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKK 136 (202)
Q Consensus 100 L~R~L~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~ 136 (202)
=.|-++||+.+++-+.+++=.+++..|++.|-..|.+
T Consensus 92 D~rrFnyickllqliak~ql~sLsg~Aqknll~ile~ 128 (332)
T KOG3926|consen 92 DRRRFNYICKLLQLIAKSQLTSLSGSAQKNLLNILEK 128 (332)
T ss_pred HHHHHHHHHHHHHHHHHccCCCCchHHHHHHHHHHHH
Confidence 3567899999999998877668999999998777653
No 27
>PRK14161 heat shock protein GrpE; Provisional
Probab=24.79 E-value=2.5e+02 Score=22.96 Aligned_cols=55 Identities=9% Similarity=0.139 Sum_probs=42.6
Q ss_pred HHHHHhhhCCChHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGS-GDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~-~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
.-+++-.++|-..+|=+.+... .+-...+..+...+..+...+.+.|+++|+...
T Consensus 68 ~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~~~~~Gv~mi~k~l~~vL~~~Gv~~I 123 (178)
T PRK14161 68 IATFAKELLNVSDNLSRALAHKPANSDVEVTNIIAGVQMTKDELDKVFHKHHIEEI 123 (178)
T ss_pred HHHHHHHHhhHHhHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 4466778899999998888642 111234678899999999999999999999754
No 28
>KOG2986 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.76 E-value=1.4e+02 Score=26.41 Aligned_cols=52 Identities=19% Similarity=0.280 Sum_probs=36.1
Q ss_pred hHHHHHHHhhhCCCh---HHHHHHhcC---CCc----hHHHHHHHHHHHHHHHHHHHHHHHh
Q 045817 142 ASSSFTVAMKLAPDR---KKFMEVIGG---SGD----VNSDMDKFCTAFAPLLEENHKFLAS 193 (202)
Q Consensus 142 vr~~~~~a~~~~P~R---~~fl~~l~~---~~~----~~~~~~~~~~~l~~~~~~i~~~~~~ 193 (202)
.|.|..+|+.++|++ .+|+++|++ .+| +-++=++...-.++.+++.+++|..
T Consensus 155 ~~sAlh~aLLlLpe~Fte~dLy~~I~~LSY~GD~RM~~gEd~~KVnnIV~~n~~~f~~lY~p 216 (313)
T KOG2986|consen 155 LRSALHAALLLLPEKFTEFDLYKKIVSLSYAGDIRMFFGEDPNKVNNIVKGNFERFQELYKP 216 (313)
T ss_pred HHHHHHHHHHhCcccCcHHHHHHHHHhhccccceEEEeccChHHHHHHhhhHHHHHHHHHHH
Confidence 467888999999988 899999974 243 2233445555666777777777765
No 29
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=24.12 E-value=1.1e+02 Score=20.39 Aligned_cols=37 Identities=8% Similarity=0.191 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhhhcchhhHH
Q 045817 105 DFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASS 144 (202)
Q Consensus 105 ~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w~vr~ 144 (202)
.-+..|++.+.... .+......|-.+|+.++.|++++
T Consensus 47 ~~v~~f~~~~~~~~---~s~~T~~~~~~alr~f~~~l~~~ 83 (84)
T PF02899_consen 47 EDVRDFLEYLAKEG---LSPSTINRRLSALRAFFRFLYRE 83 (84)
T ss_dssp HHHHHHHHHHHCTT-----HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccC---CCHHHHHHHHHHHHHHHHHHHHc
Confidence 34456666665432 45556666888899999998874
No 30
>PRK14141 heat shock protein GrpE; Provisional
Probab=23.86 E-value=2.5e+02 Score=23.63 Aligned_cols=57 Identities=7% Similarity=0.066 Sum_probs=44.4
Q ss_pred HHHHHHhhhCCChHHHHHHhcCC-C----chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGS-G----DVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~-~----~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
.+.+++..++|-..+|=+.+... . +....+..++..+.-++..+...|+++|+....
T Consensus 79 a~~~~~~dLLpViDnLerAl~~~~~~~~~~~~~~~~~l~eGv~mi~k~l~~vLek~GV~~I~ 140 (209)
T PRK14141 79 GIAGFARDMLSVSDNLRRALDAIPAEARAAADAGLKALIEGVEMTERAMLNALERHGVKKLD 140 (209)
T ss_pred HHHHHHHHHhhhHhHHHHHHhccccccccccchhHHHHHHHHHHHHHHHHHHHHHCCCEEEC
Confidence 45567778899999998888532 1 123468899999999999999999999997543
No 31
>PF08314 Sec39: Secretory pathway protein Sec39; InterPro: IPR013244 Sec39 was originally identified as a protein involved in ER-Golgi transport in a large scale promoter shut down analysis of essential yeast genes []. A subsequent study found that Sec39p (Dsl3p) is required for Golgi-ER retrograde transport and is part of a very stable protein complex that also includes Dsl1p (in mammals ZW10), Tip20p (Rint-1) and the ER localized Q-SNARE proteins Ufe1p (syntaxin-18), Sec20p and Use1p []. This was confirmed in a genome-wide analysis of protein complexes []. ; PDB: 3K8P_D.
Probab=23.56 E-value=3.5e+02 Score=26.62 Aligned_cols=123 Identities=15% Similarity=0.158 Sum_probs=64.2
Q ss_pred hHHHHHHHHHHHHHHHh-h--cchhHHHHHhHhh-hHHHHHHHhhcCchhhhhHHHHHHHHHHhcCC-CCCCccchhHHH
Q 045817 25 TKPFLEVCKLILPVLDK-F--GAAMSLVKSDIGG-NITRLENKYLSDPEKYKNLYSMVGEEVEAKTA-KRSSSCTNGLLW 99 (202)
Q Consensus 25 ~~~fl~a~~~l~~~~d~-l--G~~f~~v~~Dv~~-ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~-~~~~s~sr~LLw 99 (202)
...+++|.+.|. -|.. + |.-|.|+.=.+.. .++.|.+..++||..|+.++.+++-=...+.. ....+.......
T Consensus 516 ~~~Li~a~~~Ls-~f~l~l~~g~p~~P~~ir~~~dpl~LI~~vLe~np~aY~~~~~ll~l~~~L~~~~~~~~~~~~~~~~ 594 (715)
T PF08314_consen 516 EKDLIKATHALS-EFSLVLQPGVPFLPVQIRLHSDPLSLISKVLEQNPKAYKQLEKLLDLANNLVLAGSDESSESDDEAA 594 (715)
T ss_dssp HHHHHHHHHHHT-TS-----------HHHHHTTT-THHHHHHHHHHSTTGGG-HHHHHHHHHHHHHH-----TT---SST
T ss_pred HHHHHHHHHHHH-hCCeecCCCCCCCCceeeccCChHHHHHHHHHhCchhhcCHHHHHHHHHHHHHHhcccccccchHHH
Confidence 355666666553 2333 4 3358887765544 78999999999999999999988765555443 111111112222
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH---hhh---------hcchhhHHHHHHHhhhCCChH
Q 045817 100 LTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKT---LKK---------FHGWIASSSFTVAMKLAPDRK 157 (202)
Q Consensus 100 L~R~L~Fi~~~l~~l~~~~~~~~~~~a~~AY~~t---L~~---------yH~w~vr~~~~~a~~~~P~R~ 157 (202)
-.|- +....+.-+.+.| +.-||..+ +.+ -|+|.=+.+++++=+--|+..
T Consensus 595 ~~ri---~~~~i~~AL~~~D------f~~Ay~~~~~ll~~~~~~~~~~~~~~~~W~~~~q~Gk~~~p~~~ 655 (715)
T PF08314_consen 595 ERRI---LSMCIEAALVEDD------FETAYSYCLELLDPPSDASSSSPNDDESWRTCYQVGKYRSPEWF 655 (715)
T ss_dssp HHHH---HHHHHHHHHHTT-------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---TTSG
T ss_pred HHHH---HHHHHHHHHHcCC------HHHHHHHHHHHHHhhcccccccCCCChHHHHHHHHhCCCCCCcc
Confidence 2332 3334444444333 34455444 444 588888889999888776554
No 32
>PRK14160 heat shock protein GrpE; Provisional
Probab=23.48 E-value=2.3e+02 Score=23.85 Aligned_cols=69 Identities=12% Similarity=0.252 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhcchhh-----------HHHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 045817 127 TDSYSKTLKKFHGWIA-----------SSSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVG 195 (202)
Q Consensus 127 ~~AY~~tL~~yH~w~v-----------r~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~ 195 (202)
++.|-+..+-+.++-- ..+.+++-.++|-..+|=+.+...++ ...+...+..++..+...|+++|
T Consensus 81 kd~~lR~~AefeN~RKR~~kE~e~~~~~a~e~~~~~LLpVlDnLerAl~~~~~----~~~l~~Gv~mi~kql~~vL~k~G 156 (211)
T PRK14160 81 KDRLLRTVAEYDNYRKRTAKEKEGIYSDACEDVLKELLPVLDNLERAAAVEGS----VEDLKKGIEMTVKQFKTSLEKLG 156 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHhcccc----hhHHHHHHHHHHHHHHHHHHHCC
Confidence 4445555555555433 34567778889999999888865432 35678899999999999999999
Q ss_pred CCCC
Q 045817 196 MDDL 199 (202)
Q Consensus 196 l~~~ 199 (202)
+...
T Consensus 157 Ve~I 160 (211)
T PRK14160 157 VEEI 160 (211)
T ss_pred CEEe
Confidence 9754
No 33
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=23.46 E-value=1.3e+02 Score=17.41 Aligned_cols=26 Identities=12% Similarity=0.303 Sum_probs=22.3
Q ss_pred CCCcChHHHHHHHHHHHHHHHhhcch
Q 045817 20 QGEMLTKPFLEVCKLILPVLDKFGAA 45 (202)
Q Consensus 20 ~~~i~~~~fl~a~~~l~~~~d~lG~~ 45 (202)
.+.|..++|++++..+..|++.=|..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~~ngRl 27 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYESNGRL 27 (33)
T ss_pred CceecHHHHHHHHHHHHHHHHHcCCC
Confidence 46788999999999999999887764
No 34
>PRK14153 heat shock protein GrpE; Provisional
Probab=22.68 E-value=2.7e+02 Score=23.12 Aligned_cols=54 Identities=13% Similarity=0.232 Sum_probs=42.6
Q ss_pred HHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
.-+++..++|-..+|-+.+....+ ...+..++..+.-++..+...|+++|+...
T Consensus 82 ~~~~~~~LLpv~DnLerAl~~~~~-~~~~~~l~~Gvemi~k~~~~vL~k~Gv~~I 135 (194)
T PRK14153 82 LEQVLLDLLEVTDNFERALESART-AEDMNSIVEGIEMVSKQFFSILEKYGLERI 135 (194)
T ss_pred HHHHHHHHhhHHhHHHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHHHCCCeee
Confidence 456778899999999888864211 124678889999999999999999999754
No 35
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent.
Probab=22.55 E-value=2.1e+02 Score=21.82 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=41.7
Q ss_pred HHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
.-+++...+|--.+|-+.+....+- .....+...+..+.+.+...+.++|+...
T Consensus 34 ~~~~~~~ll~v~D~le~a~~~~~~~-~~~~~~~~g~~~i~~~l~~~L~~~Gv~~i 87 (137)
T cd00446 34 IEKFAKDLLPVLDNLERALEAAKKE-EELKNLVEGVEMTLKQLLDVLEKHGVEKI 87 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc-chHHHHHHHHHHHHHHHHHHHHHCCCEEE
Confidence 4456677888888888887643211 46788999999999999999999999743
No 36
>PRK14149 heat shock protein GrpE; Provisional
Probab=22.32 E-value=2.5e+02 Score=23.26 Aligned_cols=55 Identities=15% Similarity=0.293 Sum_probs=42.6
Q ss_pred HHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDL 199 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~ 199 (202)
...+++-.++|-..+|-+.+..... ......+...+..+++.+...|+++|+...
T Consensus 84 a~~~~~~~LLpVlDnLerAl~~~~~-~~~~~~l~~Gv~mi~k~l~~vL~k~GV~~I 138 (191)
T PRK14149 84 AYEKIALDLLPVIDALLGALKSAAE-VDKESALTKGLELTMEKLHEVLARHGIEGI 138 (191)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHCCCEEe
Confidence 3556778899999999888864211 123467889999999999999999999754
No 37
>PF06070 Herpes_UL32: Herpesvirus large structural phosphoprotein UL32; InterPro: IPR010340 The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins [].; GO: 0005198 structural molecule activity
Probab=22.21 E-value=2.5e+02 Score=28.51 Aligned_cols=75 Identities=19% Similarity=0.219 Sum_probs=50.7
Q ss_pred HHHH-HHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHHHHHhc----------C
Q 045817 97 LLWL-TRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVIG----------G 165 (202)
Q Consensus 97 LLwL-~R~L~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l~----------~ 165 (202)
++|| +|....+..||.+|..-++..+. .|+|++|+. .=+.++.|..++..|- .
T Consensus 5 FigL~rr~v~~L~~FL~~L~~~~~VDL~-------------~HpkVl~kC---g~~~L~rrt~lyN~LvLWL~Yyr~Lr~ 68 (839)
T PF06070_consen 5 FIGLPRRNVVRLTKFLKNLSSRPDVDLE-------------EHPKVLRKC---GGKFLHRRTTLYNELVLWLGYYRELRK 68 (839)
T ss_pred cccCCHHHHHHHHHHHHhcccCCCCChh-------------hCcHHHHhc---CCCcchHHHHHHHHHHHHHHHHHHHHh
Confidence 4555 68899999999999987776664 589999987 6677777777776652 1
Q ss_pred -CCchHHHHHHHHHHHHHHHHHH
Q 045817 166 -SGDVNSDMDKFCTAFAPLLEEN 187 (202)
Q Consensus 166 -~~~~~~~~~~~~~~l~~~~~~i 187 (202)
..|+...+++|......+-+++
T Consensus 69 ~~PD~s~l~~ef~~~~~~v~~~~ 91 (839)
T PF06070_consen 69 HRPDYSSLLDEFERLCSAVCRYA 91 (839)
T ss_pred hCCChHHHHHHHHHHHHHHHHHH
Confidence 1355555555544444444444
No 38
>PRK14143 heat shock protein GrpE; Provisional
Probab=22.20 E-value=2.4e+02 Score=24.14 Aligned_cols=56 Identities=9% Similarity=0.172 Sum_probs=40.2
Q ss_pred HHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 145 SFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 145 ~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
+-+++-.++|-...|-+.+..-..-......+...+..+++.+.+.|+++|+....
T Consensus 116 ~~~~~~~lLpV~DnLerAl~~~~~~~~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~ 171 (238)
T PRK14143 116 KCNTLSEILPVVDNFERARQQLKPEGEEAQALHRSYQGLYKQLVDVLKRLGVSPMR 171 (238)
T ss_pred HHHHHHHHHHHHhHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHCCCeeeC
Confidence 45667788899999988875311101234566778888999999999999997543
No 39
>PRK14146 heat shock protein GrpE; Provisional
Probab=22.11 E-value=2.8e+02 Score=23.34 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=44.0
Q ss_pred HHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
.+.+++-.++|.-.+|=+.+....+ ......++..+.-++..+...|+++|+....
T Consensus 102 a~e~~~~~lLpv~DnlerAl~~~~~-~~~~~~l~~Gv~mi~k~l~~~L~k~Gv~~i~ 157 (215)
T PRK14146 102 AVKSLVSGFLNPIDNLERVGATQNQ-SEELKPFVEGVKMILKEFYSVLEKSNVIRFD 157 (215)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc-cchhhHHHHHHHHHHHHHHHHHHHCcCeeeC
Confidence 4567788899999999888854211 1346788999999999999999999997543
No 40
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=21.93 E-value=85 Score=28.59 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=32.2
Q ss_pred CCchhhHHhcccccc--CCCCcChHHHHHHHHHHHHHHHhhcchh----HHHHHhHhhhHHHHHH
Q 045817 4 TAFSPSLEGMKHVKS--EQGEMLTKPFLEVCKLILPVLDKFGAAM----SLVKSDIGGNITRLEN 62 (202)
Q Consensus 4 ~~~~~~~~~f~~~~~--~~~~i~~~~fl~a~~~l~~~~d~lG~~f----~~v~~Dv~~ni~~l~~ 62 (202)
+||.+.++.=.+..+ .+|.|- .|-...+.++.=++-+++.| -||.++|..||+.-..
T Consensus 176 ~WyEpyldDdeeidpkaggG~vm--TiGqmvr~~l~kLdwf~TLFPRIPVPvqkqId~~ie~r~r 238 (453)
T KOG2888|consen 176 DWYEPYLDDDEEIDPKAGGGDVM--TIGQMVRTFLTKLDWFSTLFPRIPVPVQKQIDEKIEERKR 238 (453)
T ss_pred HHhhhhccchhhcCCcCCCCcee--eHHHHHHHHHhhhhHHhccCCCCCchHHHHHHHHHHhccc
Confidence 466666555443333 333333 33344444444455555544 5999999999977543
No 41
>PF04424 DUF544: Protein of unknown function (DUF544) ; InterPro: IPR007518 This is a eukaryotic protein of unknown function.
Probab=21.36 E-value=28 Score=26.48 Aligned_cols=10 Identities=30% Similarity=1.012 Sum_probs=8.6
Q ss_pred hhhhcchhhH
Q 045817 134 LKKFHGWIAS 143 (202)
Q Consensus 134 L~~yH~w~vr 143 (202)
+.=+|||++-
T Consensus 87 I~LvHGWl~d 96 (121)
T PF04424_consen 87 IPLVHGWLVD 96 (121)
T ss_pred CCceeeeccC
Confidence 6779999986
No 42
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair]
Probab=21.25 E-value=2.3e+02 Score=25.21 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=46.0
Q ss_pred hcchhHHHHHhHhhhHHHHHHHhhc---------------CchhhhhHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHH
Q 045817 42 FGAAMSLVKSDIGGNITRLENKYLS---------------DPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDF 106 (202)
Q Consensus 42 lG~~f~~v~~Dv~~ni~~l~~~~~~---------------~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLwL~R~L~F 106 (202)
+-++|+|+-+- ++||.+|....+. +-..+.||+.+...|++....+ .+-|-|+ .|
T Consensus 118 ~E~lfSFiCSS-NNNIaRIT~Mve~fc~~fG~~i~~~dg~~~h~FPsl~~L~g~~~Ea~LR~-~gfGYRA--------kY 187 (323)
T KOG2875|consen 118 IECLFSFICSS-NNNIARITGMVERFCQAFGPRIIQLDGVDYHGFPSLQALAGPEVEAELRK-LGFGYRA--------KY 187 (323)
T ss_pred HHHHHHHHhcC-CCcHHHHHHHHHHHHHhhCcceEeecCcccccCccHHHhcCcHhHHHHHH-cCcchhH--------HH
Confidence 44567777776 8999999987662 2335789999998777776533 2334333 37
Q ss_pred HHHHHHHhhcCCC
Q 045817 107 LVELFRNLLAHPD 119 (202)
Q Consensus 107 i~~~l~~l~~~~~ 119 (202)
|+.-.+.|.+.+.
T Consensus 188 I~~ta~~l~~~~g 200 (323)
T KOG2875|consen 188 ISATARALQEKQG 200 (323)
T ss_pred HHHHHHHHHHhcc
Confidence 7777777776654
No 43
>PRK14159 heat shock protein GrpE; Provisional
Probab=21.16 E-value=3.4e+02 Score=22.10 Aligned_cols=56 Identities=14% Similarity=0.007 Sum_probs=43.2
Q ss_pred HHHHHHhhhCCChHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 144 SSFTVAMKLAPDRKKFMEVIGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 144 ~~~~~a~~~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
...+++-.++|--.+|=+.+....+ ......+...++-+++.+.+.++++|+....
T Consensus 71 a~~~~~~~LLpV~DnlerAl~~~~~-~~~~~~l~~Gv~mi~k~l~~vL~k~Gv~~I~ 126 (176)
T PRK14159 71 ANESFAKDLLDVLDALEAAVNVECH-DEISLKIKEGVQNTLDLFLKKLEKHGVALIK 126 (176)
T ss_pred HHHHHHHHHhhHHhHHHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHHHCcCEecC
Confidence 4567788899999999998864211 0134568899999999999999999997543
No 44
>PF08989 DUF1896: Domain of unknown function (DUF1896); InterPro: IPR015082 This domain is found in a set of hypothetical bacterial proteins. ; PDB: 2APL_A.
Probab=20.82 E-value=1.9e+02 Score=22.94 Aligned_cols=72 Identities=14% Similarity=0.302 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHhhhhcchhhHHHHHHHhhhC-----CChHHHHHHhcCC---Cch-HHHHHHHHHHHHHHHHHHHHHHHh
Q 045817 123 PQVCTDSYSKTLKKFHGWIASSSFTVAMKLA-----PDRKKFMEVIGGS---GDV-NSDMDKFCTAFAPLLEENHKFLAS 193 (202)
Q Consensus 123 ~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~-----P~R~~fl~~l~~~---~~~-~~~~~~~~~~l~~~~~~i~~~~~~ 193 (202)
.+.|.+||.+..+. |.-+-+|-.+|+..+ +||=+.+..+..+ .++ ...-+.++ ..++..++.+|.+
T Consensus 37 ad~Aa~aYe~A~~~--G~~~~~A~e~A~~vL~~GLhFSkydtl~~VlenEF~~evp~~~~~~~a---l~Llp~~~~vF~k 111 (144)
T PF08989_consen 37 ADMAAEAYEQAVRS--GYSHDEAEEIAMEVLYQGLHFSKYDTLREVLENEFEDEVPEEKRERFA---LKLLPACEPVFAK 111 (144)
T ss_dssp HHHHHHHHHHHHHH--T--HHHHHHHHHHHHHTT-S--HHHHHHHHHHHHSTTTS-TTHHHHHH---HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHhcCcchHHHHH---HHHHHHHHHHHhc
Confidence 46788999998764 777888889998876 8888888887643 222 12333333 3344677888999
Q ss_pred cCCCCC
Q 045817 194 VGMDDL 199 (202)
Q Consensus 194 ~~l~~~ 199 (202)
+++.|-
T Consensus 112 Y~l~Dd 117 (144)
T PF08989_consen 112 YELSDD 117 (144)
T ss_dssp S---TT
T ss_pred CCCCcc
Confidence 988763
No 45
>PRK10626 hypothetical protein; Provisional
Probab=20.66 E-value=4.2e+02 Score=22.83 Aligned_cols=60 Identities=15% Similarity=0.274 Sum_probs=36.8
Q ss_pred hHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHHHHHh-----cCCCchHHHHHHHHHHHHHHHHHH
Q 045817 124 QVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFMEVI-----GGSGDVNSDMDKFCTAFAPLLEEN 187 (202)
Q Consensus 124 ~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~~l-----~~~~~~~~~~~~~~~~l~~~~~~i 187 (202)
..+-+.|...|+.|=||+.+-+-.-.=.+ .+.+..+ +....+...+.++-+.++.-+++|
T Consensus 70 qq~~~~Yq~~lr~~lP~i~~~a~~~l~~A----~~alD~Vi~~~~G~~snvr~rl~~l~~~l~~q~~~i 134 (239)
T PRK10626 70 RQQAKDYQAALRQDLPWIDEGAKSRLEKA----RVALDKVIVQELGESSNVRNRLTKLDAQLKQQMNRI 134 (239)
T ss_pred HHHHHHHHHHHHHHChHHHHHHHHHHHHH----HHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999987543222221 2222222 223346667777777766666553
No 46
>PF14493 HTH_40: Helix-turn-helix domain
Probab=20.43 E-value=58 Score=23.09 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=26.6
Q ss_pred hhhHHhccccccCCCCcChHHHHHHH--HHHHHHHHhhcc-hhHHHHHhH
Q 045817 7 SPSLEGMKHVKSEQGEMLTKPFLEVC--KLILPVLDKFGA-AMSLVKSDI 53 (202)
Q Consensus 7 ~~~~~~f~~~~~~~~~i~~~~fl~a~--~~l~~~~d~lG~-~f~~v~~Dv 53 (202)
+++.+.+..+...+.+++...|+..- +.|...++..|. .+.+++..+
T Consensus 28 sTI~~HL~~~~~~g~~~~~~~~l~~e~~~~I~~~~~~~~~~~lk~i~e~l 77 (91)
T PF14493_consen 28 STIYGHLAELIESGEPLDIEELLSEEEIKQIEDAIEKLGSEKLKPIKEAL 77 (91)
T ss_pred HHHHHHHHHHHHhCCCCCHHHhCCHHHHHHHHHHHHHcCcccHHHHHHHC
Confidence 46666666666555567777776543 455555555554 344444433
Done!