Query 045817
Match_columns 202
No_of_seqs 107 out of 424
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 09:46:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045817.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045817hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kv0_A HET-C2; GLTP, glycolipi 100.0 3E-60 1E-64 394.7 18.3 190 2-196 13-207 (209)
2 2i3f_A Glycolipid transfer-lik 100.0 3.5E-58 1.2E-62 385.9 19.4 190 2-200 8-200 (224)
3 3rzn_A GLTP, glycolipid transf 100.0 6E-58 2.1E-62 381.1 19.6 191 9-200 5-207 (209)
4 2hn1_A CORA, magnesium and cob 49.3 72 0.0025 25.6 8.1 84 36-134 175-262 (266)
5 2jtt_C Calcyclin-binding prote 43.8 30 0.001 20.0 3.5 27 107-133 8-34 (35)
6 1q5z_A SIPA, SIPA; cell invasi 43.4 24 0.00083 26.6 3.8 88 9-118 74-161 (177)
7 4egw_A Magnesium transport pro 40.6 1.4E+02 0.0049 24.0 10.3 69 37-119 160-228 (280)
8 2d7c_C RAB11 family-interactin 39.7 13 0.00045 22.4 1.5 27 155-181 2-28 (42)
9 3nvo_A Zinc transport protein 32.1 1.8E+02 0.0061 23.0 7.8 72 32-118 146-217 (264)
10 3vmx_A Voltage-gated hydrogen 29.7 1E+02 0.0034 19.0 4.4 27 171-197 21-47 (48)
11 2rbd_A BH2358 protein; putativ 27.7 1.1E+02 0.0039 22.9 5.6 38 163-200 42-79 (171)
12 3nrw_A Phage integrase/site-sp 27.2 76 0.0026 21.6 4.2 78 105-187 11-90 (117)
13 2hv8_D RAB11 family-interactin 24.1 33 0.0011 22.5 1.5 30 152-181 21-50 (64)
14 2bbh_A Divalent cation transpo 23.8 2.5E+02 0.0084 22.2 7.2 67 36-116 174-240 (269)
15 2iub_A CORA, divalent cation t 20.3 3.9E+02 0.013 22.4 11.1 68 37-118 184-251 (363)
No 1
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET: MLY; 1.90A {Podospora anserina}
Probab=100.00 E-value=3e-60 Score=394.71 Aligned_cols=190 Identities=24% Similarity=0.430 Sum_probs=180.1
Q ss_pred CCCCchhhHHhccccccC---CCCcChHHHHHHHHHHHHHHHhhcc-hhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHH
Q 045817 2 EGTAFSPSLEGMKHVKSE---QGEMLTKPFLEVCKLILPVLDKFGA-AMSLVKSDIGGNITRLENKYLSDPEKYKNLYSM 77 (202)
Q Consensus 2 ~~~~~~~~~~~f~~~~~~---~~~i~~~~fl~a~~~l~~~~d~lG~-~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~ 77 (202)
+||||+++..+|.+|+.+ +++|+|.+||++|++|++|||+||+ +|+||++||.|||++|++++.++|++|.||++|
T Consensus 13 ~~tff~~~~~~F~~~~~~~~~~~~I~t~~fL~a~~~l~~~fd~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~m 92 (209)
T 3kv0_A 13 GATFLETFXXSFVDVPIDAEXGNAISTAEFLEAAESLTTMFDVLGSIAFSPVXTDMLGNVEXIRXRMLAAPLESQNIQDL 92 (209)
T ss_dssp --CGGGGCSSCGGGCCEEGGGTSEEBHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHSGGGCSBHHHH
T ss_pred CCccHHHHHhhHHhCCCccccCCCccHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHhHHHHHHHhhcCchhhchHHHH
Confidence 789999999999999976 8899999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChH
Q 045817 78 VGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRK 157 (202)
Q Consensus 78 v~~E~~~~~~~~~~s~sr~LLwL~R~L~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~ 157 (202)
|++|++++ ..||+|+||||||||+|++.||+++. +++.+++.+|++||++||+|||||+||++|++||+++|+|+
T Consensus 93 v~~E~~~~----~~S~tr~LLwL~RaL~fi~~~l~~l~-~~~~~l~~~~~~AY~~tL~~yHgw~vr~af~~A~~a~P~R~ 167 (209)
T 3kv0_A 93 VRNELXTX----SHTATEGLLWLVRGLEFTCIALSXNI-GSTEELADSFRGSYRVTLXPHHSFLVXPIFSAAMSACPYRX 167 (209)
T ss_dssp HHHHTCC-----CCHHHHHHHHHHHHHHHHHHHHHHHH-TSCCCHHHHHHHHHHHTTGGGSCTTTHHHHHHHHHTCCCHH
T ss_pred HHHHHHhc----ccchHHHHHHHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHHHhcccchHHHHHHHHHHHhCCcHH
Confidence 99999874 67899999999999999999999999 77779999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 045817 158 KFMEVIGGS-GDVNSDMDKFCTAFAPLLEENHKFLASVGM 196 (202)
Q Consensus 158 ~fl~~l~~~-~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l 196 (202)
+|+++++++ +++.++|++++.++++++++|+++|+++|.
T Consensus 168 ~fl~~l~~~~~~~~~~L~~~l~al~~v~~~i~~~~~~~~~ 207 (209)
T 3kv0_A 168 DFYAXLGDDEQXVQEELREYLVALDXIVNILXRFLESXEA 207 (209)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999876 458999999999999999999999999874
No 2
>2i3f_A Glycolipid transfer-like protein; GLTP superfamily, GLTP-like, protein structure initiative, PSI; 1.38A {Galdieria sulphuraria} PDB: 2q52_A
Probab=100.00 E-value=3.5e-58 Score=385.90 Aligned_cols=190 Identities=27% Similarity=0.458 Sum_probs=178.7
Q ss_pred CCCCchhhHHhccccccC-CCCcChHHHHHHHHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCch-hhhhHHHHHH
Q 045817 2 EGTAFSPSLEGMKHVKSE-QGEMLTKPFLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPE-KYKNLYSMVG 79 (202)
Q Consensus 2 ~~~~~~~~~~~f~~~~~~-~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~-~~~tl~~~v~ 79 (202)
+++.|+.+..+|++++.+ +++|+|.+||+||++|++|||+||++|+||++||.|||++| ++++|+ +|.||++||+
T Consensus 8 ~~f~l~~v~~~F~~~~~~~~~~I~t~~FL~a~~~l~~~fd~LG~~F~~v~~Dv~gnI~kL---~~~~p~~~~~TL~~mv~ 84 (224)
T 2i3f_A 8 EKEDFGIIVILWKQVTVKEDGKVPLEPFLTAAKEVLRVVDAFGSGFRIVKNDIAGNIKKL---YRANQTVHAETLQELII 84 (224)
T ss_dssp ---CTTHHHHHHHTSCCCTTCCCBHHHHHHHHHHTHHHHHHHCGGGHHHHHHHHHHHHHH---HHHHTTTCCSBHHHHHH
T ss_pred cCCCHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH---HhhCccchhhhHHHHHH
Confidence 578999999999999986 78999999999999999999999999999999999999999 667798 9999999999
Q ss_pred HHHHhcCCCCCCccchhHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHH
Q 045817 80 EEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKF 159 (202)
Q Consensus 80 ~E~~~~~~~~~~s~sr~LLwL~R~L~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~f 159 (202)
+|+ + +.+||+|+||||||||+|++.||+++.++++ +++.+|++||++||+|||||+||++|++||+++|+|++|
T Consensus 85 ~E~-~----k~~S~tr~LLwL~RaL~Fi~~~l~~l~~~~~-~l~~~~~~AY~~tL~~yHgwivr~af~~Am~a~P~R~~f 158 (224)
T 2i3f_A 85 AEN-S----PDGLATVALLWLKRAFQFIASFLRRLVVTDK-SLEQCVTEAYNCTLRPCHSAVIQKVFWGGVKLAPSRERF 158 (224)
T ss_dssp HHC-S----TTCHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHTTTGGGSCHHHHHHHHHHHTTCCCHHHH
T ss_pred HHH-h----cCCchhHHHHHHHHHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhCCCHHHH
Confidence 998 4 4679999999999999999999999999888 999999999999999999999999999999999999999
Q ss_pred HHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 160 MEVIGGS-GDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 160 l~~l~~~-~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
+++|+++ +++.++|++++.++++++++|+++|+++||+|+-
T Consensus 159 l~~L~~~~~~~~~~l~~~l~~l~~v~~~i~~ly~~~~L~d~~ 200 (224)
T 2i3f_A 159 YRKLHPDLNIAKAKIEEFLIELHDPLCCIVQFFFQRELEDQC 200 (224)
T ss_dssp HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcc
Confidence 9999986 5689999999999999999999999999999985
No 3
>3rzn_A GLTP, glycolipid transfer protein; GLTP-fold, lipid transport; HET: CIS; 1.10A {Homo sapiens} PDB: 1sx6_A* 2euk_A* 2eum_A* 2evd_A* 2evl_A* 2evs_A* 1swx_A 3rwv_A* 3s0k_A* 3s0i_A* 2evt_A* 1wbe_A* 3ric_A* 1tfj_A* 2bv7_A*
Probab=100.00 E-value=6e-58 Score=381.13 Aligned_cols=191 Identities=23% Similarity=0.441 Sum_probs=175.8
Q ss_pred hHHhccccccCCCCcChHHHHHHHHHHHHHHHhhcc-hhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCC
Q 045817 9 SLEGMKHVKSEQGEMLTKPFLEVCKLILPVLDKFGA-AMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTA 87 (202)
Q Consensus 9 ~~~~f~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~-~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~ 87 (202)
+.++|++++ ++++|+|.+||+||++|++|||+||+ +|+||++||.|||++|+++++.+|++|.||++||++|++.|+.
T Consensus 5 ~~~~f~~~~-~~~~i~t~~fL~a~~~l~~~~d~LG~~~F~~v~~D~~~nI~kl~~~~~~~~~~~~tL~~mv~~E~~~~~~ 83 (209)
T 3rzn_A 5 AEHLLKPLP-ADKQIETGPFLEAVSHLPPFFDCLGSPVFTPIKADISGNITKIKAVYDTNPAKFRTLQNILEVEKEMYGA 83 (209)
T ss_dssp TTSCCCCCC-TTCCCBHHHHHHHHTTSGGGGGGSSCGGGHHHHHHHHHHHHHHHHHHHHCTTTTSBHHHHHHHHHHHHGG
T ss_pred HhhhcccCC-CCCCcCHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHhcCchhhccHHHHHHHHHHcCCc
Confidence 346788865 57899999999999999999999999 9999999999999999999999999999999999999999876
Q ss_pred C-CCCccchhHHHHHHHHHHHHHHHHHhhcCCCC-----ChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhCCChHHHHH
Q 045817 88 K-RSSSCTNGLLWLTRAMDFLVELFRNLLAHPDW-----TMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLAPDRKKFME 161 (202)
Q Consensus 88 ~-~~~s~sr~LLwL~R~L~Fi~~~l~~l~~~~~~-----~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~P~R~~fl~ 161 (202)
. .+.||+|+||||||||+|++.||+++.+++++ +++.+|++||++||+|||||+||++|++||+++|+|++|++
T Consensus 84 ~~~~~s~tr~LLwL~R~L~fi~~~l~~l~~~~~~~~~~~~l~~~~~~AY~~tL~~~H~w~vr~a~~~A~~a~P~R~~fl~ 163 (209)
T 3rzn_A 84 EWPKVGATLALMWLKRGLRFIQVFLQSICDGERDENHPNLIRVNATKAYEMALKKYHGWIVQKIFQAALYAAPYKSDFLK 163 (209)
T ss_dssp GTTSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTSTTCCHHHHHHHHHHHTGGGSCHHHHHHHHHHGGGCCCHHHHHH
T ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHhcCcccccchhHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 3 46799999999999999999999999987653 28899999999999999999999999999999999999999
Q ss_pred HhcCC-----CchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 162 VIGGS-----GDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 162 ~l~~~-----~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
+++++ +++.++|+++++++++++++|+++|+++||+..+
T Consensus 164 ~l~~g~~~~ee~~~~~l~~~l~~l~~iv~~i~~~~~~~~L~~~~ 207 (209)
T 3rzn_A 164 ALSKGQNVTEEECLEKIRLFLVNYTATIDVIYEMYTQMNAELNY 207 (209)
T ss_dssp HHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC
Confidence 99632 2488999999999999999999999999998754
No 4
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=49.32 E-value=72 Score=25.55 Aligned_cols=84 Identities=14% Similarity=0.110 Sum_probs=57.9
Q ss_pred HHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Q 045817 36 LPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLL 115 (202)
Q Consensus 36 ~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLwL~R~L~Fi~~~l~~l~ 115 (202)
..++|.+=.-+.++-..+...++.|+...-.++. ..++.+.... +.++.|+|++.=....+..|.
T Consensus 175 ~~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~--~~l~~l~~lr-------------r~l~~lrr~l~p~~~vl~~L~ 239 (266)
T 2hn1_A 175 YTILDAVVDSYFEALLKISDEIEVLEDEVVSGDS--TLIGKIHSLK-------------REILAFRNAVWPLRDVLSFFT 239 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--CCCCHHHHHH-------------HHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcH--HHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667778888889999999887654442 4455554433 568889999988888888887
Q ss_pred cCCC----CChhhHHHHHHHHHh
Q 045817 116 AHPD----WTMPQVCTDSYSKTL 134 (202)
Q Consensus 116 ~~~~----~~~~~~a~~AY~~tL 134 (202)
.++. .....-.++.|+.+.
T Consensus 240 ~~~~~~~~~~~~~~lrDv~dh~~ 262 (266)
T 2hn1_A 240 RVEHELIGEEVKVYYRDVYDHAV 262 (266)
T ss_dssp HCCCTTSCTTTHHHHHHHHHHHH
T ss_pred hcCCccCCHHHHHHHHHHHHHHH
Confidence 6532 234556777777654
No 5
>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}
Probab=43.79 E-value=30 Score=19.96 Aligned_cols=27 Identities=11% Similarity=0.334 Sum_probs=22.0
Q ss_pred HHHHHHHhhcCCCCChhhHHHHHHHHH
Q 045817 107 LVELFRNLLAHPDWTMPQVCTDSYSKT 133 (202)
Q Consensus 107 i~~~l~~l~~~~~~~~~~~a~~AY~~t 133 (202)
+..||.+|+.+.+++++.+..+||.++
T Consensus 8 l~~~fk~iY~~gddd~kram~KS~~eS 34 (35)
T 2jtt_C 8 LMNVLKKIYEDGDDDMKRTINKAWVES 34 (35)
T ss_dssp HHHHHHHHHTTCCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhc
Confidence 457888999988888998888888764
No 6
>1q5z_A SIPA, SIPA; cell invasion; 1.80A {Salmonella typhimurium} SCOP: a.196.1.1
Probab=43.45 E-value=24 Score=26.59 Aligned_cols=88 Identities=14% Similarity=0.180 Sum_probs=58.7
Q ss_pred hHHhccccccCCCCcChHHHHHHHHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCC
Q 045817 9 SLEGMKHVKSEQGEMLTKPFLEVCKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAK 88 (202)
Q Consensus 9 ~~~~f~~~~~~~~~i~~~~fl~a~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~ 88 (202)
.+.++.+-.-+++.|.....-.-|++|-+ ..++.+||+.|++...-+|..-+--+-.++.-.+.|..+
T Consensus 74 afd~lraeil~nd~iks~alkaqcsdi~~------------~~elk~kidtlke~it~hpqkeklaevalqf~reagltk 141 (177)
T 1q5z_A 74 AFDGLRAEILPNDTIKSAALKAQCSDIDK------------HPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTR 141 (177)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHTTGGG------------CHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHCTTT
T ss_pred hhhhhhhhhcCCchHHHHHHHHHhhhccc------------CHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHhchhh
Confidence 34444332234566777777777777654 578899999999999989987777777788888888766
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHHhhcCC
Q 045817 89 RSSSCTNGLLWLTRAMDFLVELFRNLLAHP 118 (202)
Q Consensus 89 ~~~s~sr~LLwL~R~L~Fi~~~l~~l~~~~ 118 (202)
.++ -+.-+ +..+|+.++.+-
T Consensus 142 lk~-etdy~---------ls~~ldgli~d~ 161 (177)
T 1q5z_A 142 LKG-ETDYV---------LSNVLDGLIGDG 161 (177)
T ss_dssp TGG-GSCHH---------HHHHHHHHSTTC
T ss_pred hcc-hhHHH---------HHHHHhHhhccC
Confidence 433 12222 345677777643
No 7
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=40.58 E-value=1.4e+02 Score=24.04 Aligned_cols=69 Identities=13% Similarity=0.216 Sum_probs=50.2
Q ss_pred HHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Q 045817 37 PVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLA 116 (202)
Q Consensus 37 ~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLwL~R~L~Fi~~~l~~l~~ 116 (202)
.++|.+=.-+.++-..+...++.|++..-..+. -..++.+.... +.|+.++|++.-....+..|..
T Consensus 160 ~lld~ivd~y~~~l~~i~~~id~lE~~l~~~~~-~~~l~~i~~lr-------------r~l~~lrr~l~p~~~vl~~L~~ 225 (280)
T 4egw_A 160 HILNEITRSYSRILMNLEDELEELEDKLLAGYD-REVMEKILGLR-------------KTLVYFHKSLIANRDVLVLLKR 225 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC-HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-hhHHHHHHHHH-------------HHHHHHHHHHhhHHHHHHHHHh
Confidence 455555556778888899999999988765543 24566665432 4688999999999999988886
Q ss_pred CCC
Q 045817 117 HPD 119 (202)
Q Consensus 117 ~~~ 119 (202)
...
T Consensus 226 ~~~ 228 (280)
T 4egw_A 226 KYL 228 (280)
T ss_dssp SCC
T ss_pred cCc
Confidence 543
No 8
>2d7c_C RAB11 family-interacting protein 3; GTP-ASE, coiled-coil, protein transport; HET: GTP MES; 1.75A {Homo sapiens} SCOP: h.1.31.1
Probab=39.72 E-value=13 Score=22.44 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=21.5
Q ss_pred ChHHHHHHhcCCCchHHHHHHHHHHHH
Q 045817 155 DRKKFMEVIGGSGDVNSDMDKFCTAFA 181 (202)
Q Consensus 155 ~R~~fl~~l~~~~~~~~~~~~~~~~l~ 181 (202)
||+++++.+...++...+++.|++.+-
T Consensus 2 S~~eL~~~l~~qee~n~~Le~YID~LL 28 (42)
T 2d7c_C 2 SRDELMEAIQKQEEINFRLQDYIDRII 28 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899888777777778888888763
No 9
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=32.10 E-value=1.8e+02 Score=23.00 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=44.5
Q ss_pred HHHHHHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHH
Q 045817 32 CKLILPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELF 111 (202)
Q Consensus 32 ~~~l~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLwL~R~L~Fi~~~l 111 (202)
..-+..+++.+=.-+.++-..+...++.|+.....+ .-..+..+... -|.++.|+|++.=....+
T Consensus 146 ~~ll~~lld~ivd~y~~~l~~l~~~id~lE~~l~~~--~~~~l~~l~~l-------------rr~l~~lrr~l~p~~~vl 210 (264)
T 3nvo_A 146 GGWLVDVCDALTDHASEFIEELHDKIIDLEDNLLDQ--QIPPRGFLALL-------------RKQLIVMRRYMAPQRDVY 210 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CCCCTTHHHHH-------------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHHHHHH-------------HHHHHHHHHHHHhHHHHH
Confidence 344566666666667777778888888887654322 12234444322 246788888888888888
Q ss_pred HHhhcCC
Q 045817 112 RNLLAHP 118 (202)
Q Consensus 112 ~~l~~~~ 118 (202)
..|..++
T Consensus 211 ~~L~~~~ 217 (264)
T 3nvo_A 211 ARLASER 217 (264)
T ss_dssp HHHTTSC
T ss_pred HHHHhCC
Confidence 8887654
No 10
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.75 E-value=1e+02 Score=19.05 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 045817 171 SDMDKFCTAFAPLLEENHKFLASVGMD 197 (202)
Q Consensus 171 ~~~~~~~~~l~~~~~~i~~~~~~~~l~ 197 (202)
.+++.-++..+.=+.++++++.+|||.
T Consensus 21 ~~Le~~c~~~eQEieRL~~LLkqHgll 47 (48)
T 3vmx_A 21 QHLEFSCSEKEQEIERLNKLLKQNGLL 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHccHHHHHHHHHHHHHHHcCCC
Confidence 467788888888899999999999984
No 11
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=27.65 E-value=1.1e+02 Score=22.89 Aligned_cols=38 Identities=18% Similarity=0.151 Sum_probs=32.8
Q ss_pred hcCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 045817 163 IGGSGDVNSDMDKFCTAFAPLLEENHKFLASVGMDDLK 200 (202)
Q Consensus 163 l~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~l~~~~ 200 (202)
-..++|++..|++.+..+..-++.+.++++++|+.-|.
T Consensus 42 ~~~D~elk~iL~~~~~~~~~~i~~l~~~~~~~g~p~P~ 79 (171)
T 2rbd_A 42 HTGDEDLKNLIDEAIQAMQDENHQLEELLRSNGVGLPP 79 (171)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 34566799999999999999999999999999997653
No 12
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=27.24 E-value=76 Score=21.65 Aligned_cols=78 Identities=15% Similarity=0.157 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhhhcchhhHHHHHHHhhhC--CChHHHHHHhcCCCchHHHHHHHHHHHHH
Q 045817 105 DFLVELFRNLLAHPDWTMPQVCTDSYSKTLKKFHGWIASSSFTVAMKLA--PDRKKFMEVIGGSGDVNSDMDKFCTAFAP 182 (202)
Q Consensus 105 ~Fi~~~l~~l~~~~~~~~~~~a~~AY~~tL~~yH~w~vr~~~~~a~~~~--P~R~~fl~~l~~~~~~~~~~~~~~~~l~~ 182 (202)
+.+..|++.+. . ..+..-.++|...|+.+-.|+-..... .+..+ ..-..|+..+...+-...-+...+.+++.
T Consensus 11 ~~~~~fl~~l~--~--~~s~~Ti~~Y~~~l~~f~~~l~~~~~~-~l~~it~~~i~~y~~~l~~~~~s~~Ti~~~ls~lr~ 85 (117)
T 3nrw_A 11 EARDRYLAHRQ--T--DAADASIKSFRYRLKHFVEWAEERDIT-AMRELTGWKLDEYETFRRGSDVSPATLNGEMQTLKN 85 (117)
T ss_dssp HHHHHHHHHHT--T--TSCHHHHHHHHHHHHHHHHHHHHTTCC-SGGGCCHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--c--CCCHHHHHHHHHHHHHHHHHHHHcCCC-ChHHCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35556666664 2 356667789999999888887532100 01111 11244555554332223345566666666
Q ss_pred HHHHH
Q 045817 183 LLEEN 187 (202)
Q Consensus 183 ~~~~i 187 (202)
+++.+
T Consensus 86 f~~~l 90 (117)
T 3nrw_A 86 WLEYL 90 (117)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 13
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=24.08 E-value=33 Score=22.55 Aligned_cols=30 Identities=17% Similarity=0.331 Sum_probs=22.8
Q ss_pred hCCChHHHHHHhcCCCchHHHHHHHHHHHH
Q 045817 152 LAPDRKKFMEVIGGSGDVNSDMDKFCTAFA 181 (202)
Q Consensus 152 ~~P~R~~fl~~l~~~~~~~~~~~~~~~~l~ 181 (202)
.-.+|+++++.+...++...+++.|++.+-
T Consensus 21 ~~~s~deL~~~l~eqee~n~~Le~YID~LL 50 (64)
T 2hv8_D 21 SSVSRDELMEAIQKQEEINFRLQDYIDRII 50 (64)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888877767778888887653
No 14
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=23.79 E-value=2.5e+02 Score=22.21 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=43.4
Q ss_pred HHHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHHHHhh
Q 045817 36 LPVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLL 115 (202)
Q Consensus 36 ~~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLwL~R~L~Fi~~~l~~l~ 115 (202)
..++|.+=.-+.++-.++...|+.|+...-.++. -..++.+.... +.++.|+|++.=....+..|.
T Consensus 174 ~~lld~ivd~y~~~l~~i~~~id~lE~~v~~~~~-~~~l~~l~~lr-------------r~l~~lrr~l~p~~~vl~~L~ 239 (269)
T 2bbh_A 174 YSLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE-KETVQRTHQLK-------------RNLVELRKTIWPLREVLSSLY 239 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667788888999999999887554432 24455554332 467888888888888877776
Q ss_pred c
Q 045817 116 A 116 (202)
Q Consensus 116 ~ 116 (202)
.
T Consensus 240 ~ 240 (269)
T 2bbh_A 240 R 240 (269)
T ss_dssp H
T ss_pred h
Confidence 4
No 15
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.29 E-value=3.9e+02 Score=22.44 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=47.0
Q ss_pred HHHHhhcchhHHHHHhHhhhHHHHHHHhhcCchhhhhHHHHHHHHHHhcCCCCCCccchhHHHHHHHHHHHHHHHHHhhc
Q 045817 37 PVLDKFGAAMSLVKSDIGGNITRLENKYLSDPEKYKNLYSMVGEEVEAKTAKRSSSCTNGLLWLTRAMDFLVELFRNLLA 116 (202)
Q Consensus 37 ~~~d~lG~~f~~v~~Dv~~ni~~l~~~~~~~~~~~~tl~~~v~~E~~~~~~~~~~s~sr~LLwL~R~L~Fi~~~l~~l~~ 116 (202)
.++|.+=.-+.++-..+...++.|++..-.++. -..++.+...+ +.++.++|++.=....+..|..
T Consensus 184 ~lld~ivd~y~~~l~~l~~~id~lE~~v~~~~~-~~~l~~l~~lr-------------r~l~~lrr~l~p~~~vl~~L~~ 249 (363)
T 2iub_A 184 SLIDALVDDYFVLLEKIDDEIDVLEEEVLERPE-KETVQRTHQLK-------------RNLVELRKTIWPLREVLSSLYR 249 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC-HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556778888999999999988765543 23455554332 4578888888888888888876
Q ss_pred CC
Q 045817 117 HP 118 (202)
Q Consensus 117 ~~ 118 (202)
..
T Consensus 250 ~~ 251 (363)
T 2iub_A 250 DV 251 (363)
T ss_dssp CC
T ss_pred cc
Confidence 43
Done!